0s autopkgtest [01:25:27]: starting date and time: 2024-03-22 01:25:27+0000 0s autopkgtest [01:25:27]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [01:25:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1pxc91w6/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-biocstyle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-61.secgroup --name adt-noble-i386-r-bioc-biocstyle-20240322-012527-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 225s autopkgtest [01:29:12]: testbed dpkg architecture: amd64 225s autopkgtest [01:29:12]: testbed apt version: 2.7.12 225s autopkgtest [01:29:12]: test architecture: i386 225s autopkgtest [01:29:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 226s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 226s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 226s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3801 kB] 226s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 226s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 226s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 226s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 226s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 226s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 226s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 226s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 226s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1280 kB] 226s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4251 kB] 226s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 226s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 226s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 226s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 229s Fetched 11.3 MB in 1s (7958 kB/s) 229s Reading package lists... 231s Reading package lists... 231s Building dependency tree... 231s Reading state information... 231s Calculating upgrade... 232s The following packages will be upgraded: 232s cloud-init fonts-ubuntu-console python3-markupsafe 232s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 232s Need to get 629 kB of archives. 232s After this operation, 11.3 kB disk space will be freed. 232s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 232s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 232s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 232s Preconfiguring packages ... 232s Fetched 629 kB in 0s (27.0 MB/s) 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 232s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 232s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 232s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 232s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 232s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 233s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 233s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 233s Setting up cloud-init (24.1.2-0ubuntu1) ... 234s Setting up python3-markupsafe (2.1.5-1build1) ... 234s Processing triggers for man-db (2.12.0-3) ... 235s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 236s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 236s sh: Attempting to set up Debian/Ubuntu apt sources automatically 236s sh: Distribution appears to be Ubuntu 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 238s eatmydata is already the newest version (131-1). 238s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s Reading package lists... 238s Building dependency tree... 238s Reading state information... 238s dbus is already the newest version (1.14.10-4ubuntu1). 238s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s Reading package lists... 239s Building dependency tree... 239s Reading state information... 239s rng-tools-debian is already the newest version (2.4). 239s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 239s Reading package lists... 239s Building dependency tree... 239s Reading state information... 239s The following packages will be REMOVED: 239s cloud-init* python3-configobj* python3-debconf* 240s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 240s After this operation, 3256 kB disk space will be freed. 240s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 240s Removing cloud-init (24.1.2-0ubuntu1) ... 240s Removing python3-configobj (5.0.8-3) ... 240s Removing python3-debconf (1.5.86) ... 240s Processing triggers for man-db (2.12.0-3) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 241s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 241s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 241s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 241s invoke-rc.d: policy-rc.d denied execution of try-restart. 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s linux-generic is already the newest version (6.8.0-11.11+1). 242s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 242s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 242s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 242s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 244s Reading package lists... 244s Reading package lists... 245s Building dependency tree... 245s Reading state information... 245s Calculating upgrade... 245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 245s Reading package lists... 245s Building dependency tree... 245s Reading state information... 246s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 246s autopkgtest [01:29:33]: rebooting testbed after setup commands that affected boot 397s autopkgtest [01:32:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 398s autopkgtest [01:32:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocstyle 399s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocstyle 2.30.0+dfsg-1 (dsc) [2201 B] 399s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocstyle 2.30.0+dfsg-1 (tar) [367 kB] 399s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocstyle 2.30.0+dfsg-1 (diff) [5616 B] 399s gpgv: Signature made Thu Nov 30 06:46:55 2023 UTC 399s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 399s gpgv: issuer "tille@debian.org" 399s gpgv: Can't check signature: No public key 399s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocstyle_2.30.0+dfsg-1.dsc: no acceptable signature found 399s autopkgtest [01:32:06]: testing package r-bioc-biocstyle version 2.30.0+dfsg-1 400s autopkgtest [01:32:07]: build not needed 402s autopkgtest [01:32:09]: test pkg-r-autopkgtest: preparing testbed 406s Note, using file '/tmp/autopkgtest.MRASKQ/1-autopkgtest-satdep.dsc' to get the build dependencies 407s Reading package lists... 407s Building dependency tree... 407s Reading state information... 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 408s The following NEW packages will be installed: 408s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 408s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 408s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 408s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 408s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 408s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 408s imagemagick-6-common javascript-common libapache-pom-java libasan8 408s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libbz2-dev 408s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcommons-logging-java 408s libcommons-parent-java libcrypt-dev libdatrie1 libdav1d7 libde265-0 408s libdeflate0 libfftw3-double3 libfontbox-java libfontconfig1 libfontenc1 408s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 408s libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 408s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 408s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 408s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 408s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 408s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 408s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 408s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 408s liblatex-tounicode-perl liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7 408s liblua5.4-0 liblzma-dev libmagick++-6.q16-9 libmagickcore-6.q16-7 408s libmagickwand-6.q16-7 libmpc3 libncurses-dev libnsl-dev libopenjp2-7 408s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 408s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 408s libpdfbox-java libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 408s libquadmath0 libraw23 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 408s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libtext-unidecode-perl 408s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 408s libwebp7 libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0 libxcb-shm0 408s libxft2 libxi6 libxml-libxml-perl libxml-namespacesupport-perl 408s libxml-sax-base-perl libxml-sax-perl libxmu6 libxpm4 libxrender1 libxss1 408s libxt6 libzzip-0-13 linux-libc-dev littler lmodern node-bootstrap-sass 408s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 408s pkg-r-autopkgtest pkgconf pkgconf-bin preview-latex-style r-base-core 408s r-base-dev r-bioc-biocgenerics r-bioc-biocstyle r-cran-base64enc 408s r-cran-biocmanager r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 408s r-cran-commonmark r-cran-crayon r-cran-curl r-cran-digest r-cran-ellipsis 408s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 408s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 408s r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler r-cran-magick 408s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises 408s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown 408s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi 408s r-cran-stringr r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun 408s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texinfo 408s texinfo-lib texlive texlive-base texlive-bibtex-extra texlive-binaries 408s texlive-fonts-extra texlive-fonts-recommended texlive-latex-base 408s texlive-latex-extra texlive-latex-recommended texlive-pictures 408s texlive-plain-generic unzip x11-common xdg-utils xfonts-encodings 408s xfonts-utils zip zlib1g-dev 408s 0 upgraded, 247 newly installed, 0 to remove and 0 not upgraded. 408s Need to get 1053 MB of archives. 408s After this operation, 3172 MB of additional disk space will be used. 408s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 408s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu1 [835 kB] 408s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 408s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 408s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 408s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 408s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 408s Get:8 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.0-1 [605 kB] 408s Get:9 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 408s Get:10 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 408s Get:11 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 408s Get:12 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 408s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 408s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 408s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 408s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 408s Get:17 http://ftpmaster.internal/ubuntu noble/universe amd64 liblqr-1-0 amd64 0.4.2-2.1 [27.7 kB] 408s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 408s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 408s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libraw23 amd64 0.21.2-2 [378 kB] 408s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 408s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 408s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 408s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 408s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpdemux2 amd64 1.3.2-0.4 [12.4 kB] 408s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpmux3 amd64 1.3.2-0.4 [25.6 kB] 408s Get:27 http://ftpmaster.internal/ubuntu noble/universe amd64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB] 408s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 libmagickcore-6.q16-7 amd64 8:6.9.12.98+dfsg1-5 [1811 kB] 408s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 libmagickwand-6.q16-7 amd64 8:6.9.12.98+dfsg1-5 [318 kB] 408s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 408s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 408s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 408s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 408s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 408s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 408s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 408s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 408s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 408s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 408s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 408s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 408s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 408s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 408s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 408s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 408s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 408s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 408s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 408s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 408s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 408s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 408s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 408s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 408s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 408s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 408s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 408s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 408s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 408s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 408s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 408s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 408s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 408s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 408s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 408s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 408s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 408s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 408s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 408s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 408s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 408s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 409s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 409s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 409s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 409s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 409s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 409s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libapache-pom-java all 29-2 [5284 B] 409s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 409s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 409s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 409s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 409s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 409s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 409s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 409s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 409s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 409s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 409s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 409s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libcommons-parent-java all 56-1 [10.7 kB] 409s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libcommons-logging-java all 1.3.0-1ubuntu1 [63.8 kB] 409s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 409s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libfontenc1 amd64 1:1.1.8-1 [14.0 kB] 409s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 409s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 409s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 409s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 409s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 409s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 409s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 409s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 409s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 409s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 409s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 409s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 409s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 409s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 409s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 409s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 409s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 409s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 409s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 409s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 409s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 409s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 409s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 409s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 409s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 409s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 409s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 409s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 libmagick++-6.q16-9 amd64 8:6.9.12.98+dfsg1-5 [148 kB] 409s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 409s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 409s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 409s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 409s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 409s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 409s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 409s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 409s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 409s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 409s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 409s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 409s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 409s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 409s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 409s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 409s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 409s Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 409s Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 409s Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 409s Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 409s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 409s Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 409s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 libtext-unidecode-perl all 1.30-3 [105 kB] 409s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 409s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 409s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 409s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 409s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 409s Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 409s Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 409s Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 409s Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 libxml-namespacesupport-perl all 1.12-2 [13.5 kB] 409s Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 libxml-sax-base-perl all 1.09-3 [18.9 kB] 409s Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] 409s Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1build2 [304 kB] 409s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 409s Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 409s Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 409s Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 409s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 409s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 409s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 409s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 409s Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 409s Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-utils amd64 1:7.7+6build2 [94.6 kB] 409s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 lmodern all 2.005-1 [9542 kB] 409s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 409s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 409s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 409s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 409s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 410s Get:173 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 410s Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 410s Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 410s Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 410s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 410s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 410s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 preview-latex-style all 13.2-1 [347 kB] 410s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 410s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 410s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 410s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 410s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 410s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 410s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 410s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 410s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 410s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 410s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 410s Get:191 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 410s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 410s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 410s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 410s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 410s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 410s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 410s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 410s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 410s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 410s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 410s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 410s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 410s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 410s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 410s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 410s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 410s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 410s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 410s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 410s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 410s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 410s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 410s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 410s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 410s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 410s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 410s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 410s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 410s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 410s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 410s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 410s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 410s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 410s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 410s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 410s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 410s Get:228 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 410s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 410s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 410s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 410s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 411s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 411s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 411s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magick amd64 2.8.2+dfsg-1build1 [487 kB] 411s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 411s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 texinfo-lib amd64 7.1-3 [133 kB] 411s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 texinfo all 7.1-3 [1273 kB] 411s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-fonts-recommended all 2023.20240207-1 [4973 kB] 411s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-recommended all 2023.20240207-1 [8826 kB] 411s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive all 2023.20240207-1 [14.0 kB] 411s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-fonts-extra all 2023.20240207-1 [629 MB] 417s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 libfontbox-java all 1:1.8.16-5 [208 kB] 417s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 libpdfbox-java all 1:1.8.16-5 [5521 kB] 417s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-pictures all 2023.20240207-1 [16.7 MB] 417s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-extra all 2023.20240207-1 [19.2 MB] 417s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-plain-generic all 2023.20240207-1 [29.0 MB] 418s Preconfiguring packages ... 418s Fetched 1053 MB in 10s (109 MB/s) 418s Selecting previously unselected package libgomp1:amd64. 418s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 418s Preparing to unpack .../000-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 418s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 419s Selecting previously unselected package libfftw3-double3:amd64. 419s Preparing to unpack .../001-libfftw3-double3_3.3.10-1ubuntu1_amd64.deb ... 419s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu1) ... 419s Selecting previously unselected package fonts-dejavu-mono. 419s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ... 419s Unpacking fonts-dejavu-mono (2.37-8) ... 419s Selecting previously unselected package fonts-dejavu-core. 419s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ... 419s Unpacking fonts-dejavu-core (2.37-8) ... 419s Selecting previously unselected package fontconfig-config. 419s Preparing to unpack .../004-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 419s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 419s Selecting previously unselected package libfontconfig1:amd64. 419s Preparing to unpack .../005-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 419s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 419s Selecting previously unselected package libsharpyuv0:amd64. 419s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_amd64.deb ... 419s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 419s Selecting previously unselected package libdav1d7:amd64. 419s Preparing to unpack .../007-libdav1d7_1.4.0-1_amd64.deb ... 419s Unpacking libdav1d7:amd64 (1.4.0-1) ... 419s Selecting previously unselected package libheif-plugin-dav1d:amd64. 419s Preparing to unpack .../008-libheif-plugin-dav1d_1.17.6-1ubuntu1_amd64.deb ... 419s Unpacking libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 419s Selecting previously unselected package libde265-0:amd64. 419s Preparing to unpack .../009-libde265-0_1.0.15-1_amd64.deb ... 419s Unpacking libde265-0:amd64 (1.0.15-1) ... 419s Selecting previously unselected package libheif-plugin-libde265:amd64. 419s Preparing to unpack .../010-libheif-plugin-libde265_1.17.6-1ubuntu1_amd64.deb ... 419s Unpacking libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 419s Selecting previously unselected package libheif1:amd64. 419s Preparing to unpack .../011-libheif1_1.17.6-1ubuntu1_amd64.deb ... 419s Unpacking libheif1:amd64 (1.17.6-1ubuntu1) ... 419s Selecting previously unselected package libjbig0:amd64. 419s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 419s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 419s Selecting previously unselected package libjpeg-turbo8:amd64. 419s Preparing to unpack .../013-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 419s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 419s Selecting previously unselected package libjpeg8:amd64. 419s Preparing to unpack .../014-libjpeg8_8c-2ubuntu11_amd64.deb ... 419s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 419s Selecting previously unselected package liblcms2-2:amd64. 419s Preparing to unpack .../015-liblcms2-2_2.14-2_amd64.deb ... 419s Unpacking liblcms2-2:amd64 (2.14-2) ... 419s Selecting previously unselected package liblqr-1-0:amd64. 419s Preparing to unpack .../016-liblqr-1-0_0.4.2-2.1_amd64.deb ... 419s Unpacking liblqr-1-0:amd64 (0.4.2-2.1) ... 419s Selecting previously unselected package libltdl7:amd64. 419s Preparing to unpack .../017-libltdl7_2.4.7-7_amd64.deb ... 419s Unpacking libltdl7:amd64 (2.4.7-7) ... 419s Selecting previously unselected package libopenjp2-7:amd64. 419s Preparing to unpack .../018-libopenjp2-7_2.5.0-2_amd64.deb ... 419s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 419s Selecting previously unselected package libraw23:amd64. 419s Preparing to unpack .../019-libraw23_0.21.2-2_amd64.deb ... 419s Unpacking libraw23:amd64 (0.21.2-2) ... 419s Selecting previously unselected package libdeflate0:amd64. 419s Preparing to unpack .../020-libdeflate0_1.19-1_amd64.deb ... 419s Unpacking libdeflate0:amd64 (1.19-1) ... 419s Selecting previously unselected package liblerc4:amd64. 419s Preparing to unpack .../021-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 419s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 419s Selecting previously unselected package libwebp7:amd64. 419s Preparing to unpack .../022-libwebp7_1.3.2-0.4_amd64.deb ... 419s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 419s Selecting previously unselected package libtiff6:amd64. 419s Preparing to unpack .../023-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 419s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 419s Selecting previously unselected package libwebpdemux2:amd64. 419s Preparing to unpack .../024-libwebpdemux2_1.3.2-0.4_amd64.deb ... 419s Unpacking libwebpdemux2:amd64 (1.3.2-0.4) ... 419s Selecting previously unselected package libwebpmux3:amd64. 419s Preparing to unpack .../025-libwebpmux3_1.3.2-0.4_amd64.deb ... 419s Unpacking libwebpmux3:amd64 (1.3.2-0.4) ... 419s Selecting previously unselected package imagemagick-6-common. 419s Preparing to unpack .../026-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ... 419s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 419s Selecting previously unselected package libmagickcore-6.q16-7:amd64. 419s Preparing to unpack .../027-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_amd64.deb ... 419s Unpacking libmagickcore-6.q16-7:amd64 (8:6.9.12.98+dfsg1-5) ... 419s Selecting previously unselected package libmagickwand-6.q16-7:amd64. 419s Preparing to unpack .../028-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_amd64.deb ... 419s Unpacking libmagickwand-6.q16-7:amd64 (8:6.9.12.98+dfsg1-5) ... 420s Selecting previously unselected package libc-dev-bin. 420s Preparing to unpack .../029-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 420s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 420s Selecting previously unselected package linux-libc-dev:amd64. 420s Preparing to unpack .../030-linux-libc-dev_6.8.0-11.11_amd64.deb ... 420s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 420s Selecting previously unselected package libcrypt-dev:amd64. 420s Preparing to unpack .../031-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 420s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 420s Selecting previously unselected package libtirpc-dev:amd64. 420s Preparing to unpack .../032-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 420s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 420s Selecting previously unselected package libnsl-dev:amd64. 420s Preparing to unpack .../033-libnsl-dev_1.3.0-3_amd64.deb ... 420s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 420s Selecting previously unselected package rpcsvc-proto. 420s Preparing to unpack .../034-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 420s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 420s Selecting previously unselected package libc6-dev:amd64. 420s Preparing to unpack .../035-libc6-dev_2.39-0ubuntu2_amd64.deb ... 420s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 420s Selecting previously unselected package libisl23:amd64. 420s Preparing to unpack .../036-libisl23_0.26-3_amd64.deb ... 420s Unpacking libisl23:amd64 (0.26-3) ... 420s Selecting previously unselected package libmpc3:amd64. 420s Preparing to unpack .../037-libmpc3_1.3.1-1_amd64.deb ... 420s Unpacking libmpc3:amd64 (1.3.1-1) ... 420s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 420s Preparing to unpack .../038-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 420s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package cpp-13. 420s Preparing to unpack .../039-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 420s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 420s Selecting previously unselected package cpp-x86-64-linux-gnu. 420s Preparing to unpack .../040-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 420s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Selecting previously unselected package cpp. 420s Preparing to unpack .../041-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 420s Unpacking cpp (4:13.2.0-7ubuntu1) ... 420s Selecting previously unselected package libcc1-0:amd64. 420s Preparing to unpack .../042-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 420s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 420s Selecting previously unselected package libitm1:amd64. 420s Preparing to unpack .../043-libitm1_14-20240303-1ubuntu1_amd64.deb ... 420s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 420s Selecting previously unselected package libatomic1:amd64. 420s Preparing to unpack .../044-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 420s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 420s Selecting previously unselected package libasan8:amd64. 420s Preparing to unpack .../045-libasan8_14-20240303-1ubuntu1_amd64.deb ... 420s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 420s Selecting previously unselected package liblsan0:amd64. 420s Preparing to unpack .../046-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 420s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 420s Selecting previously unselected package libtsan2:amd64. 420s Preparing to unpack .../047-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 420s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 421s Selecting previously unselected package libubsan1:amd64. 421s Preparing to unpack .../048-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 421s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 421s Selecting previously unselected package libhwasan0:amd64. 421s Preparing to unpack .../049-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 421s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 421s Selecting previously unselected package libquadmath0:amd64. 421s Preparing to unpack .../050-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 421s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 421s Selecting previously unselected package libgcc-13-dev:amd64. 421s Preparing to unpack .../051-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 421s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 421s Preparing to unpack .../052-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 421s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package gcc-13. 421s Preparing to unpack .../053-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 421s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package gcc-x86-64-linux-gnu. 421s Preparing to unpack .../054-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 421s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 421s Selecting previously unselected package gcc. 421s Preparing to unpack .../055-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 421s Unpacking gcc (4:13.2.0-7ubuntu1) ... 421s Selecting previously unselected package libstdc++-13-dev:amd64. 421s Preparing to unpack .../056-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 421s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 421s Selecting previously unselected package g++-13-x86-64-linux-gnu. 421s Preparing to unpack .../057-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 421s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 422s Selecting previously unselected package g++-13. 422s Preparing to unpack .../058-g++-13_13.2.0-17ubuntu2_amd64.deb ... 422s Unpacking g++-13 (13.2.0-17ubuntu2) ... 422s Selecting previously unselected package g++-x86-64-linux-gnu. 422s Preparing to unpack .../059-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 422s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Selecting previously unselected package g++. 422s Preparing to unpack .../060-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 422s Unpacking g++ (4:13.2.0-7ubuntu1) ... 422s Selecting previously unselected package build-essential. 422s Preparing to unpack .../061-build-essential_12.10ubuntu1_amd64.deb ... 422s Unpacking build-essential (12.10ubuntu1) ... 422s Selecting previously unselected package dctrl-tools. 422s Preparing to unpack .../062-dctrl-tools_2.24-3build2_amd64.deb ... 422s Unpacking dctrl-tools (2.24-3build2) ... 422s Selecting previously unselected package fontconfig. 422s Preparing to unpack .../063-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 422s Unpacking fontconfig (2.15.0-1ubuntu1) ... 422s Selecting previously unselected package fonts-font-awesome. 422s Preparing to unpack .../064-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 422s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 422s Selecting previously unselected package fonts-glyphicons-halflings. 422s Preparing to unpack .../065-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 422s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 422s Selecting previously unselected package fonts-lmodern. 422s Preparing to unpack .../066-fonts-lmodern_2.005-1_all.deb ... 422s Unpacking fonts-lmodern (2.005-1) ... 422s Selecting previously unselected package fonts-mathjax. 422s Preparing to unpack .../067-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 422s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 422s Selecting previously unselected package libgfortran5:amd64. 422s Preparing to unpack .../068-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 422s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 422s Selecting previously unselected package libgfortran-13-dev:amd64. 422s Preparing to unpack .../069-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 422s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 422s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 422s Preparing to unpack .../070-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 422s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 422s Selecting previously unselected package gfortran-13. 422s Preparing to unpack .../071-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 422s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 422s Selecting previously unselected package gfortran-x86-64-linux-gnu. 422s Preparing to unpack .../072-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 422s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Selecting previously unselected package gfortran. 422s Preparing to unpack .../073-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 422s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 422s Selecting previously unselected package icu-devtools. 422s Preparing to unpack .../074-icu-devtools_74.2-1ubuntu1_amd64.deb ... 422s Unpacking icu-devtools (74.2-1ubuntu1) ... 422s Selecting previously unselected package javascript-common. 422s Preparing to unpack .../075-javascript-common_11+nmu1_all.deb ... 423s Unpacking javascript-common (11+nmu1) ... 423s Selecting previously unselected package libapache-pom-java. 423s Preparing to unpack .../076-libapache-pom-java_29-2_all.deb ... 423s Unpacking libapache-pom-java (29-2) ... 423s Selecting previously unselected package libio-string-perl. 423s Preparing to unpack .../077-libio-string-perl_1.08-4_all.deb ... 423s Unpacking libio-string-perl (1.08-4) ... 423s Selecting previously unselected package liblatex-tounicode-perl. 423s Preparing to unpack .../078-liblatex-tounicode-perl_0.54-2_all.deb ... 423s Unpacking liblatex-tounicode-perl (0.54-2) ... 423s Selecting previously unselected package libbibtex-parser-perl. 423s Preparing to unpack .../079-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 423s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 423s Selecting previously unselected package libblas3:amd64. 423s Preparing to unpack .../080-libblas3_3.12.0-3_amd64.deb ... 423s Unpacking libblas3:amd64 (3.12.0-3) ... 423s Selecting previously unselected package libblas-dev:amd64. 423s Preparing to unpack .../081-libblas-dev_3.12.0-3_amd64.deb ... 423s Unpacking libblas-dev:amd64 (3.12.0-3) ... 423s Selecting previously unselected package libbz2-dev:amd64. 423s Preparing to unpack .../082-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 423s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 423s Selecting previously unselected package libpixman-1-0:amd64. 423s Preparing to unpack .../083-libpixman-1-0_0.42.2-1_amd64.deb ... 423s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 423s Selecting previously unselected package libxcb-render0:amd64. 423s Preparing to unpack .../084-libxcb-render0_1.15-1_amd64.deb ... 423s Unpacking libxcb-render0:amd64 (1.15-1) ... 423s Selecting previously unselected package libxcb-shm0:amd64. 423s Preparing to unpack .../085-libxcb-shm0_1.15-1_amd64.deb ... 423s Unpacking libxcb-shm0:amd64 (1.15-1) ... 423s Selecting previously unselected package libxrender1:amd64. 423s Preparing to unpack .../086-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 423s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 423s Selecting previously unselected package libcairo2:amd64. 423s Preparing to unpack .../087-libcairo2_1.18.0-1_amd64.deb ... 423s Unpacking libcairo2:amd64 (1.18.0-1) ... 423s Selecting previously unselected package libcommons-parent-java. 423s Preparing to unpack .../088-libcommons-parent-java_56-1_all.deb ... 423s Unpacking libcommons-parent-java (56-1) ... 423s Selecting previously unselected package libcommons-logging-java. 423s Preparing to unpack .../089-libcommons-logging-java_1.3.0-1ubuntu1_all.deb ... 423s Unpacking libcommons-logging-java (1.3.0-1ubuntu1) ... 423s Selecting previously unselected package libdatrie1:amd64. 423s Preparing to unpack .../090-libdatrie1_0.2.13-3_amd64.deb ... 423s Unpacking libdatrie1:amd64 (0.2.13-3) ... 423s Selecting previously unselected package libfontenc1:amd64. 423s Preparing to unpack .../091-libfontenc1_1%3a1.1.8-1_amd64.deb ... 423s Unpacking libfontenc1:amd64 (1:1.1.8-1) ... 423s Selecting previously unselected package libgraphite2-3:amd64. 423s Preparing to unpack .../092-libgraphite2-3_1.3.14-2_amd64.deb ... 423s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 423s Selecting previously unselected package libharfbuzz0b:amd64. 423s Preparing to unpack .../093-libharfbuzz0b_8.3.0-2_amd64.deb ... 423s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 423s Selecting previously unselected package x11-common. 423s Preparing to unpack .../094-x11-common_1%3a7.7+23ubuntu2_all.deb ... 423s Unpacking x11-common (1:7.7+23ubuntu2) ... 423s Selecting previously unselected package libice6:amd64. 423s Preparing to unpack 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unselected package liblapack3:amd64. 424s Preparing to unpack .../116-liblapack3_3.12.0-3_amd64.deb ... 424s Unpacking liblapack3:amd64 (3.12.0-3) ... 424s Selecting previously unselected package liblapack-dev:amd64. 424s Preparing to unpack .../117-liblapack-dev_3.12.0-3_amd64.deb ... 424s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 424s Selecting previously unselected package liblua5.4-0:amd64. 424s Preparing to unpack .../118-liblua5.4-0_5.4.6-3_amd64.deb ... 424s Unpacking liblua5.4-0:amd64 (5.4.6-3) ... 424s Selecting previously unselected package libmagick++-6.q16-9:amd64. 424s Preparing to unpack .../119-libmagick++-6.q16-9_8%3a6.9.12.98+dfsg1-5_amd64.deb ... 424s Unpacking libmagick++-6.q16-9:amd64 (8:6.9.12.98+dfsg1-5) ... 424s Selecting previously unselected package libncurses-dev:amd64. 424s Preparing to unpack .../120-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 424s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 424s Selecting previously unselected package libthai-data. 424s Preparing to unpack .../121-libthai-data_0.1.29-2_all.deb ... 424s Unpacking libthai-data (0.1.29-2) ... 424s Selecting previously unselected package libthai0:amd64. 424s Preparing to unpack .../122-libthai0_0.1.29-2_amd64.deb ... 424s Unpacking libthai0:amd64 (0.1.29-2) ... 424s Selecting previously unselected package libpango-1.0-0:amd64. 424s Preparing to unpack .../123-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 424s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 424s Selecting previously unselected package libpangoft2-1.0-0:amd64. 425s Preparing to unpack .../124-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 425s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 425s Selecting previously unselected package libpangocairo-1.0-0:amd64. 425s Preparing to unpack .../125-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 425s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 425s Selecting previously unselected package libpaper1:amd64. 425s Preparing to unpack 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libtexlua53-5:amd64. 425s Preparing to unpack .../142-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 425s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 425s Selecting previously unselected package libtext-unidecode-perl. 425s Preparing to unpack .../143-libtext-unidecode-perl_1.30-3_all.deb ... 425s Unpacking libtext-unidecode-perl (1.30-3) ... 425s Selecting previously unselected package libxft2:amd64. 425s Preparing to unpack .../144-libxft2_2.3.6-1_amd64.deb ... 425s Unpacking libxft2:amd64 (2.3.6-1) ... 425s Selecting previously unselected package libxss1:amd64. 425s Preparing to unpack .../145-libxss1_1%3a1.2.3-1build2_amd64.deb ... 425s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 425s Selecting previously unselected package libtk8.6:amd64. 425s Preparing to unpack .../146-libtk8.6_8.6.13-2_amd64.deb ... 425s Unpacking libtk8.6:amd64 (8.6.13-2) ... 425s Selecting previously unselected package libxt6:amd64. 425s Preparing to unpack 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Selecting previously unselected package libxml-sax-base-perl. 425s Preparing to unpack .../153-libxml-sax-base-perl_1.09-3_all.deb ... 425s Unpacking libxml-sax-base-perl (1.09-3) ... 425s Selecting previously unselected package libxml-sax-perl. 425s Preparing to unpack .../154-libxml-sax-perl_1.02+dfsg-3_all.deb ... 425s Unpacking libxml-sax-perl (1.02+dfsg-3) ... 425s Selecting previously unselected package libxml-libxml-perl. 425s Preparing to unpack .../155-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1build2_amd64.deb ... 425s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-1build2) ... 426s Selecting previously unselected package libzzip-0-13:amd64. 426s Preparing to unpack .../156-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 426s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 426s Selecting previously unselected package zip. 426s Preparing to unpack .../157-zip_3.0-13_amd64.deb ... 426s Unpacking zip (3.0-13) ... 426s Selecting previously unselected package unzip. 426s Preparing to unpack .../158-unzip_6.0-28ubuntu3_amd64.deb ... 426s Unpacking unzip (6.0-28ubuntu3) ... 426s Selecting previously unselected package xdg-utils. 426s Preparing to unpack .../159-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 426s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 426s Selecting previously unselected package r-base-core. 426s Preparing to unpack .../160-r-base-core_4.3.2-1build1_amd64.deb ... 426s Unpacking r-base-core (4.3.2-1build1) ... 426s Selecting previously unselected package r-cran-littler. 426s Preparing to unpack .../161-r-cran-littler_0.3.19-1_amd64.deb ... 426s Unpacking r-cran-littler (0.3.19-1) ... 426s Selecting previously unselected package littler. 426s Preparing to unpack .../162-littler_0.3.19-1_all.deb ... 426s Unpacking littler (0.3.19-1) ... 426s Selecting previously unselected package tex-common. 426s Preparing to unpack .../163-tex-common_6.18_all.deb ... 426s Unpacking tex-common (6.18) ... 426s Selecting previously unselected package xfonts-encodings. 426s Preparing to unpack .../164-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 426s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 426s Selecting previously unselected package xfonts-utils. 426s Preparing to unpack .../165-xfonts-utils_1%3a7.7+6build2_amd64.deb ... 426s Unpacking xfonts-utils (1:7.7+6build2) ... 426s Selecting previously unselected package lmodern. 426s Preparing to unpack .../166-lmodern_2.005-1_all.deb ... 426s Unpacking lmodern (2.005-1) ... 427s Selecting previously unselected package node-bootstrap-sass. 427s Preparing to unpack .../167-node-bootstrap-sass_3.4.3-2_all.deb ... 427s Unpacking node-bootstrap-sass (3.4.3-2) ... 427s Selecting previously unselected package node-html5shiv. 427s Preparing to unpack .../168-node-html5shiv_3.7.3+dfsg-5_all.deb ... 427s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 427s Selecting previously unselected package node-normalize.css. 427s Preparing to unpack .../169-node-normalize.css_8.0.1-5_all.deb ... 427s Unpacking node-normalize.css (8.0.1-5) ... 427s Selecting previously unselected package pandoc-data. 427s Preparing to unpack .../170-pandoc-data_3.1.3-1_all.deb ... 427s Unpacking pandoc-data (3.1.3-1) ... 427s Selecting previously unselected package pandoc. 427s Preparing to unpack .../171-pandoc_3.1.3+ds-2_amd64.deb ... 427s Unpacking pandoc (3.1.3+ds-2) ... 428s Selecting previously unselected package pkgconf-bin. 428s Preparing to unpack .../172-pkgconf-bin_1.8.1-2_amd64.deb ... 428s Unpacking pkgconf-bin (1.8.1-2) ... 428s Selecting previously unselected package pkgconf:amd64. 428s Preparing to unpack .../173-pkgconf_1.8.1-2_amd64.deb ... 428s Unpacking pkgconf:amd64 (1.8.1-2) ... 428s Selecting previously unselected package pkg-config:amd64. 428s Preparing to unpack .../174-pkg-config_1.8.1-2_amd64.deb ... 428s Unpacking pkg-config:amd64 (1.8.1-2) ... 428s Selecting previously unselected package liblzma-dev:amd64. 428s Preparing to unpack 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r-cran-base64enc (0.1-3-3) ... 428s Selecting previously unselected package r-cran-digest. 428s Preparing to unpack .../181-r-cran-digest_0.6.34-1_amd64.deb ... 428s Unpacking r-cran-digest (0.6.34-1) ... 428s Selecting previously unselected package r-cran-rlang. 428s Preparing to unpack .../182-r-cran-rlang_1.1.3-1_amd64.deb ... 428s Unpacking r-cran-rlang (1.1.3-1) ... 428s Selecting previously unselected package r-cran-ellipsis. 428s Preparing to unpack .../183-r-cran-ellipsis_0.3.2-2_amd64.deb ... 428s Unpacking r-cran-ellipsis (0.3.2-2) ... 428s Selecting previously unselected package r-cran-fastmap. 428s Preparing to unpack .../184-r-cran-fastmap_1.1.1-1_amd64.deb ... 428s Unpacking r-cran-fastmap (1.1.1-1) ... 428s Selecting previously unselected package r-cran-htmltools. 428s Preparing to unpack .../185-r-cran-htmltools_0.5.7-1_amd64.deb ... 428s Unpacking r-cran-htmltools (0.5.7-1) ... 428s Selecting previously unselected package r-cran-evaluate. 428s Preparing to unpack .../186-r-cran-evaluate_0.23-1_all.deb ... 428s Unpacking r-cran-evaluate (0.23-1) ... 428s Selecting previously unselected package r-cran-xfun. 428s Preparing to unpack .../187-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 428s Unpacking r-cran-xfun (0.41+dfsg-1) ... 428s Selecting previously unselected package r-cran-highr. 428s Preparing to unpack .../188-r-cran-highr_0.10+dfsg-1_all.deb ... 428s Unpacking r-cran-highr (0.10+dfsg-1) ... 428s Selecting previously unselected package r-cran-yaml. 428s Preparing to unpack .../189-r-cran-yaml_2.3.8-1_amd64.deb ... 428s Unpacking r-cran-yaml (2.3.8-1) ... 428s Selecting previously unselected package libjs-mathjax. 428s Preparing to unpack .../190-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 428s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 429s Selecting previously unselected package r-cran-knitr. 429s Preparing to unpack .../191-r-cran-knitr_1.45+dfsg-1_all.deb ... 429s Unpacking r-cran-knitr (1.45+dfsg-1) ... 429s Selecting previously unselected package r-cran-cachem. 429s Preparing to unpack .../192-r-cran-cachem_1.0.8-1_amd64.deb ... 429s Unpacking r-cran-cachem (1.0.8-1) ... 429s Selecting previously unselected package r-cran-jquerylib. 429s Preparing to unpack .../193-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 429s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 429s Selecting previously unselected package r-cran-jsonlite. 429s Preparing to unpack .../194-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 429s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 429s Selecting previously unselected package r-cran-cli. 429s Preparing to unpack .../195-r-cran-cli_3.6.2-1_amd64.deb ... 429s Unpacking r-cran-cli (3.6.2-1) ... 429s Selecting previously unselected package r-cran-glue. 429s Preparing to unpack .../196-r-cran-glue_1.7.0-1_amd64.deb ... 429s Unpacking r-cran-glue (1.7.0-1) ... 429s Selecting previously unselected package r-cran-lifecycle. 429s Preparing to unpack .../197-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 429s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 429s Selecting previously unselected package r-cran-memoise. 429s Preparing to unpack .../198-r-cran-memoise_2.0.1-1_all.deb ... 429s Unpacking r-cran-memoise (2.0.1-1) ... 429s Selecting previously unselected package r-cran-mime. 429s Preparing to unpack .../199-r-cran-mime_0.12-1_amd64.deb ... 429s Unpacking r-cran-mime (0.12-1) ... 429s Selecting previously unselected package r-cran-fs. 429s Preparing to unpack .../200-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 429s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 429s Selecting previously unselected package r-cran-r6. 429s Preparing to unpack .../201-r-cran-r6_2.5.1-1_all.deb ... 429s Unpacking r-cran-r6 (2.5.1-1) ... 429s Selecting previously unselected package r-cran-rappdirs. 429s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_amd64.deb ... 429s Unpacking r-cran-rappdirs (0.3.3-1) ... 429s Selecting previously unselected package r-cran-sass. 429s Preparing to unpack .../203-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 429s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 429s Selecting previously unselected package r-cran-bslib. 429s Preparing to unpack .../204-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 429s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 430s Selecting previously unselected package r-cran-fontawesome. 430s Preparing to unpack .../205-r-cran-fontawesome_0.5.2-1_all.deb ... 430s Unpacking r-cran-fontawesome (0.5.2-1) ... 430s Selecting previously unselected package r-cran-magrittr. 430s Preparing to unpack .../206-r-cran-magrittr_2.0.3-1_amd64.deb ... 430s Unpacking r-cran-magrittr (2.0.3-1) ... 430s Selecting previously unselected package r-cran-stringi. 430s Preparing to unpack .../207-r-cran-stringi_1.8.3-1_amd64.deb ... 430s Unpacking r-cran-stringi (1.8.3-1) ... 430s Selecting previously unselected package r-cran-vctrs. 430s Preparing to unpack .../208-r-cran-vctrs_0.6.5-1_amd64.deb ... 430s Unpacking r-cran-vctrs (0.6.5-1) ... 430s Selecting previously unselected package r-cran-stringr. 430s Preparing to unpack .../209-r-cran-stringr_1.5.1-1_all.deb ... 430s Unpacking r-cran-stringr (1.5.1-1) ... 430s Selecting previously unselected package r-cran-tinytex. 430s Preparing to unpack .../210-r-cran-tinytex_0.49-1_all.deb ... 430s Unpacking r-cran-tinytex (0.49-1) ... 430s Selecting previously unselected package libjs-modernizr. 430s Preparing to unpack .../211-libjs-modernizr_2.6.2+ds1-5_all.deb ... 430s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 430s Selecting previously unselected package r-cran-pkgkitten. 430s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 430s Unpacking r-cran-pkgkitten (0.2.3-1) ... 430s Selecting previously unselected package r-cran-rcpp. 430s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_amd64.deb ... 430s Unpacking r-cran-rcpp (1.0.12-1) ... 430s Selecting previously unselected package r-cran-later. 430s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 430s Unpacking r-cran-later (1.3.2+dfsg-1) ... 430s Selecting previously unselected package r-cran-promises. 430s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 430s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 430s Selecting previously unselected package r-cran-httpuv. 430s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 430s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 430s Selecting previously unselected package r-cran-xtable. 430s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 430s Unpacking r-cran-xtable (1:1.8-4-2) ... 430s Selecting previously unselected package r-cran-sourcetools. 430s Preparing to unpack .../218-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 430s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 430s Selecting previously unselected package r-cran-crayon. 430s Preparing to unpack .../219-r-cran-crayon_1.5.2-1_all.deb ... 430s Unpacking r-cran-crayon (1.5.2-1) ... 430s Selecting previously unselected package r-cran-withr. 430s Preparing to unpack .../220-r-cran-withr_2.5.0-1_all.deb ... 430s Unpacking r-cran-withr (2.5.0-1) ... 430s Selecting previously unselected package r-cran-commonmark. 430s Preparing to unpack .../221-r-cran-commonmark_1.9.1-1_amd64.deb ... 430s Unpacking r-cran-commonmark (1.9.1-1) ... 430s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 430s Preparing to unpack .../222-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 430s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 430s Selecting previously unselected package r-cran-shiny. 430s Preparing to unpack .../223-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 430s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 430s Selecting previously unselected package r-cran-rmarkdown. 430s Preparing to unpack .../224-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 430s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 431s Selecting previously unselected package r-cran-bookdown. 431s Preparing to unpack .../225-r-cran-bookdown_0.37+dfsg-1_all.deb ... 431s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 431s Selecting previously unselected package r-cran-biocmanager. 431s Preparing to unpack .../226-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 431s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 431s Selecting previously unselected package t1utils. 431s Preparing to unpack .../227-t1utils_1.41-4build2_amd64.deb ... 431s Unpacking t1utils (1.41-4build2) ... 431s Selecting previously unselected package texlive-binaries. 431s Preparing to unpack .../228-texlive-binaries_2023.20230311.66589-9_amd64.deb ... 431s Unpacking texlive-binaries (2023.20230311.66589-9) ... 431s Selecting previously unselected package texlive-base. 431s Preparing to unpack .../229-texlive-base_2023.20240207-1_all.deb ... 431s Unpacking texlive-base (2023.20240207-1) ... 432s Selecting previously unselected package texlive-latex-base. 432s Preparing to unpack .../230-texlive-latex-base_2023.20240207-1_all.deb ... 432s Unpacking texlive-latex-base (2023.20240207-1) ... 433s Selecting previously unselected package texlive-bibtex-extra. 433s Preparing to unpack .../231-texlive-bibtex-extra_2023.20240207-1_all.deb ... 433s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 436s Selecting previously unselected package r-bioc-biocstyle. 436s Preparing to unpack .../232-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 436s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 436s Selecting previously unselected package r-cran-curl. 436s Preparing to unpack .../233-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 436s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 436s Selecting previously unselected package r-cran-magick. 436s Preparing to unpack .../234-r-cran-magick_2.8.2+dfsg-1build1_amd64.deb ... 436s Unpacking r-cran-magick (2.8.2+dfsg-1build1) ... 436s Selecting previously unselected package r-cran-runit. 436s Preparing to unpack .../235-r-cran-runit_0.4.33-1_all.deb ... 436s Unpacking r-cran-runit (0.4.33-1) ... 436s Selecting previously unselected package texinfo-lib. 436s Preparing to unpack .../236-texinfo-lib_7.1-3_amd64.deb ... 436s Unpacking texinfo-lib (7.1-3) ... 436s Selecting previously unselected package texinfo. 436s Preparing to unpack .../237-texinfo_7.1-3_all.deb ... 436s Unpacking texinfo (7.1-3) ... 436s Selecting previously unselected package texlive-fonts-recommended. 436s Preparing to unpack .../238-texlive-fonts-recommended_2023.20240207-1_all.deb ... 436s Unpacking texlive-fonts-recommended (2023.20240207-1) ... 437s Selecting previously unselected package texlive-latex-recommended. 437s Preparing to unpack .../239-texlive-latex-recommended_2023.20240207-1_all.deb ... 437s Unpacking texlive-latex-recommended (2023.20240207-1) ... 438s Selecting previously unselected package texlive. 438s Preparing to unpack .../240-texlive_2023.20240207-1_all.deb ... 438s Unpacking texlive (2023.20240207-1) ... 438s Selecting previously unselected package texlive-fonts-extra. 438s 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478s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 478s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 478s Setting up libdav1d7:amd64 (1.4.0-1) ... 478s Setting up liblqr-1-0:amd64 (0.4.2-2.1) ... 478s Setting up libnsl-dev:amd64 (1.3.0-3) ... 478s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 478s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 478s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 478s Setting up fonts-lmodern (2.005-1) ... 478s Setting up liblua5.4-0:amd64 (5.4.6-3) ... 478s Setting up libopenjp2-7:amd64 (2.5.0-2) ... 478s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 478s Setting up libthai-data (0.1.29-2) ... 478s Setting up node-bootstrap-sass (3.4.3-2) ... 478s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 478s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 478s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 478s Setting up pandoc-data (3.1.3-1) ... 478s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 478s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 478s Setting up libisl23:amd64 (0.26-3) ... 478s Setting up libtext-unidecode-perl (1.30-3) ... 478s Setting up libde265-0:amd64 (1.0.15-1) ... 478s Setting up libc-dev-bin (2.39-0ubuntu2) ... 478s Setting up libwebpmux3:amd64 (1.3.2-0.4) ... 478s Setting up node-normalize.css (8.0.1-5) ... 478s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 478s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 478s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 478s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 478s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 478s Setting up libblas-dev:amd64 (3.12.0-3) ... 478s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 478s Setting up dctrl-tools (2.24-3build2) ... 478s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 478s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 478s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 478s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 478s Setting up libpotrace0:amd64 (1.16-2) ... 478s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 478s Setting up libice6:amd64 (2:1.0.10-1build2) ... 478s Setting up liblapack3:amd64 (3.12.0-3) ... 478s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 478s Setting up libpdfbox-java (1:1.8.16-5) ... 478s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 478s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 478s Setting up preview-latex-style (13.2-1) ... 478s Setting up libwebpdemux2:amd64 (1.3.2-0.4) ... 478s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 478s Setting up libcommons-parent-java (56-1) ... 478s Setting up libcommons-logging-java (1.3.0-1ubuntu1) ... 478s Setting up xfonts-utils (1:7.7+6build2) ... 478s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 478s Setting up libxml-sax-perl (1.02+dfsg-3) ... 478s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... 478s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 479s 479s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version 479s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 479s Setting up pkgconf:amd64 (1.8.1-2) ... 479s Setting up libthai0:amd64 (0.1.29-2) ... 479s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 479s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 479s Setting up pandoc (3.1.3+ds-2) ... 479s Setting up liblapack-dev:amd64 (3.12.0-3) ... 479s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 479s Setting up pkg-config:amd64 (1.8.1-2) ... 479s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1build2) ... 479s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... 479s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... 479s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 479s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version 479s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 479s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 479s Setting up lmodern (2.005-1) ... 479s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 479s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 479s Setting up libraw23:amd64 (0.21.2-2) ... 479s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 479s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 479s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 479s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 479s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 479s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 479s Setting up fontconfig (2.15.0-1ubuntu1) ... 482s Regenerating fonts cache... done. 482s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 482s Setting up libxft2:amd64 (2.3.6-1) ... 482s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 482s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 482s Setting up cpp-13 (13.2.0-17ubuntu2) ... 482s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 482s Setting up libtk8.6:amd64 (8.6.13-2) ... 482s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 482s Setting up libreadline-dev:amd64 (8.2-3) ... 482s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 482s Setting up libcairo2:amd64 (1.18.0-1) ... 482s Setting up gcc-13 (13.2.0-17ubuntu2) ... 482s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 482s Setting up texinfo (7.1-3) ... 482s Running mktexlsr. This may take some time. ... done. 482s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 482s Setting up cpp (4:13.2.0-7ubuntu1) ... 482s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 482s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 482s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 482s Setting up libxmu6:amd64 (2:1.1.3-3) ... 482s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 482s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 482s Setting up libpng-dev:amd64 (1.6.43-1) ... 482s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 482s Setting up libxaw7:amd64 (2:1.0.14-1) ... 482s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 482s Setting up gcc (4:13.2.0-7ubuntu1) ... 482s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 482s Setting up r-base-core (4.3.2-1build1) ... 482s 482s Creating config file /etc/R/Renviron with new version 482s Setting up r-cran-crayon (1.5.2-1) ... 482s Setting up r-cran-sourcetools (0.1.7-1-1) ... 482s Setting up texlive-binaries (2023.20230311.66589-9) ... 482s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 482s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 482s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 482s Setting up r-cran-commonmark (1.9.1-1) ... 482s Setting up r-cran-r6 (2.5.1-1) ... 482s Setting up r-cran-pkgkitten (0.2.3-1) ... 482s Setting up texlive-base (2023.20240207-1) ... 483s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 484s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 484s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 485s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 486s Setting up r-cran-magrittr (2.0.3-1) ... 486s Setting up r-cran-rappdirs (0.3.3-1) ... 486s Setting up r-cran-littler (0.3.19-1) ... 486s Setting up r-cran-fs (1.6.3+dfsg-1) ... 486s Setting up r-cran-rcpp (1.0.12-1) ... 486s Setting up r-cran-curl (5.2.0+dfsg-1) ... 486s Setting up g++-13 (13.2.0-17ubuntu2) ... 486s Setting up r-bioc-biocgenerics (0.48.1-2) ... 486s Setting up r-cran-rlang (1.1.3-1) ... 486s Setting up littler (0.3.19-1) ... 486s Setting up r-cran-xfun (0.41+dfsg-1) ... 486s Setting up r-cran-withr (2.5.0-1) ... 486s Setting up r-cran-mime (0.12-1) ... 486s Setting up r-cran-base64enc (0.1-3-3) ... 486s Setting up r-cran-digest (0.6.34-1) ... 486s Setting up r-cran-yaml (2.3.8-1) ... 486s Setting up r-cran-evaluate (0.23-1) ... 486s Setting up texlive-plain-generic (2023.20240207-1) ... 486s Setting up r-cran-highr (0.10+dfsg-1) ... 486s Setting up r-cran-glue (1.7.0-1) ... 486s Setting up r-cran-xtable (1:1.8-4-2) ... 486s Setting up r-cran-cli (3.6.2-1) ... 486s Setting up gfortran (4:13.2.0-7ubuntu1) ... 486s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 486s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 486s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 486s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 486s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 486s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 486s Setting up r-cran-fastmap (1.1.1-1) ... 486s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 486s Setting up r-cran-stringi (1.8.3-1) ... 486s Setting up texlive-latex-base (2023.20240207-1) ... 486s Setting up texlive-fonts-extra (2023.20240207-1) ... 486s Setting up r-cran-runit (0.4.33-1) ... 486s Setting up texlive-latex-recommended (2023.20240207-1) ... 486s Setting up r-cran-later (1.3.2+dfsg-1) ... 486s Setting up texlive-pictures (2023.20240207-1) ... 486s Setting up r-cran-tinytex (0.49-1) ... 486s Setting up r-cran-knitr (1.45+dfsg-1) ... 486s Setting up g++ (4:13.2.0-7ubuntu1) ... 486s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 486s Setting up r-cran-cachem (1.0.8-1) ... 486s Setting up texlive-fonts-recommended (2023.20240207-1) ... 486s Setting up build-essential (12.10ubuntu1) ... 486s Setting up r-cran-vctrs (0.6.5-1) ... 486s Setting up r-cran-ellipsis (0.3.2-2) ... 486s Setting up r-base-dev (4.3.2-1build1) ... 486s Setting up r-cran-stringr (1.5.1-1) ... 486s Setting up texlive (2023.20240207-1) ... 486s Setting up texlive-latex-extra (2023.20240207-1) ... 486s Setting up texlive-bibtex-extra (2023.20240207-1) ... 486s Setting up r-cran-memoise (2.0.1-1) ... 486s Setting up r-cran-promises (1.2.1+dfsg-1) ... 486s Setting up r-cran-htmltools (0.5.7-1) ... 486s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 486s Setting up r-cran-sass (0.4.8+dfsg-1) ... 486s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 486s Setting up r-cran-fontawesome (0.5.2-1) ... 486s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 486s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 486s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 486s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 486s Setting up r-cran-bookdown (0.37+dfsg-1) ... 486s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 486s Setting up libheif-plugin-libde265:amd64 (1.17.6-1ubuntu1) ... 486s Setting up libheif1:amd64 (1.17.6-1ubuntu1) ... 486s Setting up libmagickcore-6.q16-7:amd64 (8:6.9.12.98+dfsg1-5) ... 486s Setting up libmagickwand-6.q16-7:amd64 (8:6.9.12.98+dfsg1-5) ... 486s Setting up libheif-plugin-dav1d:amd64 (1.17.6-1ubuntu1) ... 486s Setting up libmagick++-6.q16-9:amd64 (8:6.9.12.98+dfsg1-5) ... 486s Setting up r-cran-magick (2.8.2+dfsg-1build1) ... 486s Processing triggers for man-db (2.12.0-3) ... 487s Processing triggers for install-info (7.1-3) ... 487s Processing triggers for libc-bin (2.39-0ubuntu2) ... 487s Processing triggers for tex-common (6.18) ... 491s Running updmap-sys. This may take some time... done. 491s Running mktexlsr /var/lib/texmf ... done. 491s Building format(s) --all. 552s This may take some time... done. 554s Reading package lists... 554s Building dependency tree... 554s Reading state information... 555s Starting pkgProblemResolver with broken count: 0 555s Starting 2 pkgProblemResolver with broken count: 0 555s Done 555s The following NEW packages will be installed: 555s autopkgtest-satdep 555s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 555s Need to get 0 B/696 B of archives. 555s After this operation, 0 B of additional disk space will be used. 555s Get:1 /tmp/autopkgtest.MRASKQ/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 555s Selecting previously unselected package autopkgtest-satdep. 556s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 233865 files and directories currently installed.) 556s Preparing to unpack .../2-autopkgtest-satdep.deb ... 556s Unpacking autopkgtest-satdep (0) ... 556s Setting up autopkgtest-satdep (0) ... 557s (Reading database ... 233865 files and directories currently installed.) 557s Removing autopkgtest-satdep (0) ... 558s autopkgtest [01:34:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 558s autopkgtest [01:34:45]: test pkg-r-autopkgtest: [----------------------- 558s Test: Try to load the R library BiocStyle 558s 558s R version 4.3.2 (2023-10-31) -- "Eye Holes" 558s Copyright (C) 2023 The R Foundation for Statistical Computing 558s Platform: x86_64-pc-linux-gnu (64-bit) 558s 558s R is free software and comes with ABSOLUTELY NO WARRANTY. 558s You are welcome to redistribute it under certain conditions. 558s Type 'license()' or 'licence()' for distribution details. 558s 558s R is a collaborative project with many contributors. 558s Type 'contributors()' for more information and 558s 'citation()' on how to cite R or R packages in publications. 558s 558s Type 'demo()' for some demos, 'help()' for on-line help, or 558s 'help.start()' for an HTML browser interface to help. 558s Type 'q()' to quit R. 558s 558s > library('BiocStyle') 558s > 558s > 558s Other tests are currently unsupported! 558s They will be progressively added. 558s autopkgtest [01:34:45]: test pkg-r-autopkgtest: -----------------------] 559s pkg-r-autopkgtest PASS 559s autopkgtest [01:34:46]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 559s autopkgtest [01:34:46]: @@@@@@@@@@@@@@@@@@@@ summary 559s pkg-r-autopkgtest PASS 569s Creating nova instance adt-noble-i386-r-bioc-biocstyle-20240322-012527-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...