0s autopkgtest [01:12:43]: starting date and time: 2024-03-22 01:12:43+0000
  0s autopkgtest [01:12:43]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [01:12:43]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1b7cfjhc/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-biocgenerics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-61.secgroup --name adt-noble-i386-r-bioc-biocgenerics-20240322-011243-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
288s autopkgtest [01:17:31]: testbed dpkg architecture: amd64
288s autopkgtest [01:17:31]: testbed apt version: 2.7.12
288s autopkgtest [01:17:31]: test architecture: i386
288s autopkgtest [01:17:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
288s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
288s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
288s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB]
288s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
288s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
288s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
288s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
288s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
288s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
288s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
288s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
288s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB]
288s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
288s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
288s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
288s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
288s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
292s Fetched 11.3 MB in 2s (6947 kB/s)
292s Reading package lists...
294s Reading package lists...
294s Building dependency tree...
294s Reading state information...
294s Calculating upgrade...
294s The following packages will be upgraded:
294s   cloud-init fonts-ubuntu-console python3-markupsafe
294s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
294s Need to get 629 kB of archives.
294s After this operation, 11.3 kB disk space will be freed.
294s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
294s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
294s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
295s Preconfiguring packages ...
295s Fetched 629 kB in 0s (21.9 MB/s)
295s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
295s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
295s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
295s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
295s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
295s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
295s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
295s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
295s Setting up cloud-init (24.1.2-0ubuntu1) ...
297s Setting up python3-markupsafe (2.1.5-1build1) ...
297s Processing triggers for man-db (2.12.0-3) ...
297s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
298s Reading package lists...
298s Building dependency tree...
298s Reading state information...
298s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
299s sh: Attempting to set up Debian/Ubuntu apt sources automatically
299s sh: Distribution appears to be Ubuntu
300s Reading package lists...
300s Building dependency tree...
300s Reading state information...
300s eatmydata is already the newest version (131-1).
300s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
300s Reading package lists...
300s Building dependency tree...
300s Reading state information...
301s dbus is already the newest version (1.14.10-4ubuntu1).
301s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
301s Reading package lists...
301s Building dependency tree...
301s Reading state information...
301s rng-tools-debian is already the newest version (2.4).
301s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
301s Reading package lists...
302s Building dependency tree...
302s Reading state information...
302s The following packages will be REMOVED:
302s   cloud-init* python3-configobj* python3-debconf*
302s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
302s After this operation, 3256 kB disk space will be freed.
302s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
302s Removing cloud-init (24.1.2-0ubuntu1) ...
303s Removing python3-configobj (5.0.8-3) ...
303s Removing python3-debconf (1.5.86) ...
303s Processing triggers for man-db (2.12.0-3) ...
303s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
303s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
304s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
304s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
304s invoke-rc.d: policy-rc.d denied execution of try-restart.
304s Reading package lists...
304s Building dependency tree...
304s Reading state information...
304s linux-generic is already the newest version (6.8.0-11.11+1).
304s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
305s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
305s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
305s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
307s Reading package lists...
307s Reading package lists...
307s Building dependency tree...
307s Reading state information...
307s Calculating upgrade...
307s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
307s Reading package lists...
308s Building dependency tree...
308s Reading state information...
308s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
308s autopkgtest [01:17:51]: rebooting testbed after setup commands that affected boot
326s autopkgtest [01:18:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
326s autopkgtest [01:18:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-biocgenerics
327s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocgenerics 0.48.1-2 (dsc) [2117 B]
327s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocgenerics 0.48.1-2 (tar) [49.5 kB]
327s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-biocgenerics 0.48.1-2 (diff) [6756 B]
327s gpgv: Signature made Thu Dec 14 06:16:25 2023 UTC
327s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
327s gpgv:                issuer "tille@debian.org"
327s gpgv: Can't check signature: No public key
327s dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocgenerics_0.48.1-2.dsc: no acceptable signature found
327s autopkgtest [01:18:10]: testing package r-bioc-biocgenerics version 0.48.1-2
329s autopkgtest [01:18:12]: build not needed
331s autopkgtest [01:18:14]: test pkg-r-autopkgtest: preparing testbed
333s Note, using file '/tmp/autopkgtest.W6S4jl/1-autopkgtest-satdep.dsc' to get the build dependencies
334s Reading package lists...
334s Building dependency tree...
334s Reading state information...
334s Starting pkgProblemResolver with broken count: 0
334s Starting 2 pkgProblemResolver with broken count: 0
334s Done
334s The following NEW packages will be installed:
334s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
334s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
334s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
334s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
334s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
334s   libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev
334s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1
334s   libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5
334s   libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23
334s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
334s   libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
334s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
334s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
334s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
334s   libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6
334s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1
334s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6
334s   linux-libc-dev littler pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin
334s   r-base-core r-base-dev r-bioc-affy r-bioc-affyio r-bioc-annotate
334s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
334s   r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 r-bioc-genomeinfodb
334s   r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest
334s   r-bioc-matrixgenerics r-bioc-preprocesscore r-bioc-rhtslib r-bioc-rsamtools
334s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
334s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
334s   r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64
334s   r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools
334s   r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
334s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr
334s   r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
334s   r-cran-gtable r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling
334s   r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit
334s   r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
334s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
334s   r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png
334s   r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl
334s   r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-scales r-cran-snow
334s   r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
334s   r-cran-withr r-cran-xml r-cran-xtable rpcsvc-proto unzip x11-common
334s   xdg-utils zip zlib1g-dev
335s 0 upgraded, 201 newly installed, 0 to remove and 0 not upgraded.
335s Need to get 256 MB of archives.
335s After this operation, 785 MB of additional disk space will be used.
335s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
335s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
335s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
335s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
335s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
335s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
335s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
335s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
335s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
335s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
335s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
335s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
335s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
335s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
335s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
335s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
335s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
335s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
335s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
335s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
335s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
335s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
335s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
335s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
335s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
335s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
335s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
335s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
335s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
335s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
335s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
335s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
335s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
335s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
335s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
335s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
335s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
335s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
335s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
335s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
335s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
335s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
335s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
335s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
335s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
335s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
335s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
335s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
335s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
335s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB]
335s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B]
335s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
335s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
335s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
335s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
335s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
335s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
335s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
335s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
335s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
335s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
335s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
335s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
335s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
335s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
335s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
335s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
335s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
335s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
335s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
335s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
335s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
335s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
335s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
335s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
335s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
335s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
335s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
335s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
335s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
335s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
335s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
335s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
335s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
335s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
335s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
335s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
335s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
335s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
335s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
335s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
335s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
335s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
335s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
335s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
335s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
335s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
335s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
335s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
335s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
335s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
335s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
336s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB]
336s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B]
336s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
336s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
336s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
336s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
336s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
336s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
336s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
336s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
336s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
336s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affyio amd64 1.72.0-1 [90.8 kB]
336s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
336s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-preprocesscore amd64 1.64.0+ds-1 [151 kB]
336s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affy amd64 1.80.0-1 [1350 kB]
336s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
336s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
336s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
336s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
336s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
336s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
336s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
336s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
336s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
336s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
336s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
336s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
336s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
336s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
336s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
336s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
336s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
336s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
336s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB]
336s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
336s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
336s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
336s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
336s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB]
336s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
336s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
336s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB]
336s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
336s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
336s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
336s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
336s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
336s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
336s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
336s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
336s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
336s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB]
336s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
336s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
336s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB]
336s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
336s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
336s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
336s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
336s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB]
336s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B]
336s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB]
336s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
336s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
336s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB]
336s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
336s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
336s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
336s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
336s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
336s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
336s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
336s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB]
336s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
336s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
336s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB]
336s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB]
336s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
336s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB]
336s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
336s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
336s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB]
336s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
336s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
336s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
336s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
336s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
336s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
336s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
336s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
336s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
336s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
336s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
336s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
336s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.8.0.0-1 [862 kB]
336s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-deseq2 amd64 1.42.0+dfsg-1 [1226 kB]
336s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB]
336s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB]
336s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB]
337s Preconfiguring packages ...
337s Fetched 256 MB in 2s (142 MB/s)
337s Selecting previously unselected package libc-dev-bin.
337s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
337s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
337s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
337s Selecting previously unselected package linux-libc-dev:amd64.
337s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
337s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
337s Selecting previously unselected package libcrypt-dev:amd64.
337s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
337s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
337s Selecting previously unselected package libtirpc-dev:amd64.
338s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
338s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
338s Selecting previously unselected package libnsl-dev:amd64.
338s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
338s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
338s Selecting previously unselected package rpcsvc-proto.
338s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
338s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
338s Selecting previously unselected package libc6-dev:amd64.
338s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
338s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
338s Selecting previously unselected package libisl23:amd64.
338s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
338s Unpacking libisl23:amd64 (0.26-3) ...
338s Selecting previously unselected package libmpc3:amd64.
338s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
338s Unpacking libmpc3:amd64 (1.3.1-1) ...
338s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
338s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
338s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
338s Selecting previously unselected package cpp-13.
338s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
338s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
338s Selecting previously unselected package cpp-x86-64-linux-gnu.
338s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
338s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
338s Selecting previously unselected package cpp.
338s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
338s Unpacking cpp (4:13.2.0-7ubuntu1) ...
338s Selecting previously unselected package libcc1-0:amd64.
338s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libgomp1:amd64.
338s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libitm1:amd64.
338s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libatomic1:amd64.
338s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libasan8:amd64.
338s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package liblsan0:amd64.
338s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libtsan2:amd64.
338s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
338s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
338s Selecting previously unselected package libubsan1:amd64.
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344s Selecting previously unselected package libpango-1.0-0:amd64.
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346s Selecting previously unselected package r-cran-lifecycle.
346s Preparing to unpack .../125-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
346s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
346s Selecting previously unselected package r-cran-vctrs.
346s Preparing to unpack .../126-r-cran-vctrs_0.6.5-1_amd64.deb ...
346s Unpacking r-cran-vctrs (0.6.5-1) ...
346s Selecting previously unselected package r-cran-blob.
346s Preparing to unpack .../127-r-cran-blob_1.2.4-1_all.deb ...
346s Unpacking r-cran-blob (1.2.4-1) ...
346s Selecting previously unselected package r-cran-fastmap.
346s Preparing to unpack .../128-r-cran-fastmap_1.1.1-1_amd64.deb ...
346s Unpacking r-cran-fastmap (1.1.1-1) ...
346s Selecting previously unselected package r-cran-cachem.
346s Preparing to unpack .../129-r-cran-cachem_1.0.8-1_amd64.deb ...
346s Unpacking r-cran-cachem (1.0.8-1) ...
346s Selecting previously unselected package r-cran-memoise.
346s Preparing to unpack .../130-r-cran-memoise_2.0.1-1_all.deb ...
346s Unpacking r-cran-memoise (2.0.1-1) ...
346s Selecting previously unselected package r-cran-pkgconfig.
346s Preparing to unpack .../131-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
346s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
346s Selecting previously unselected package r-cran-plogr.
346s Preparing to unpack .../132-r-cran-plogr_0.2.0-3build1_all.deb ...
346s Unpacking r-cran-plogr (0.2.0-3build1) ...
346s Selecting previously unselected package r-cran-cpp11.
346s Preparing to unpack .../133-r-cran-cpp11_0.4.7-1_all.deb ...
346s Unpacking r-cran-cpp11 (0.4.7-1) ...
346s Selecting previously unselected package r-cran-rsqlite.
346s Preparing to unpack .../134-r-cran-rsqlite_2.3.4-1_amd64.deb ...
346s Unpacking r-cran-rsqlite (2.3.4-1) ...
346s Selecting previously unselected package r-cran-curl.
346s Preparing to unpack .../135-r-cran-curl_5.2.0+dfsg-1_amd64.deb ...
346s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
346s Selecting previously unselected package r-cran-jsonlite.
346s Preparing to unpack .../136-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
346s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
346s Selecting previously unselected package r-cran-mime.
346s Preparing to unpack .../137-r-cran-mime_0.12-1_amd64.deb ...
346s Unpacking r-cran-mime (0.12-1) ...
346s Selecting previously unselected package r-cran-sys.
346s Preparing to unpack .../138-r-cran-sys_3.4.2-1_amd64.deb ...
346s Unpacking r-cran-sys (3.4.2-1) ...
346s Selecting previously unselected package r-cran-askpass.
346s Preparing to unpack .../139-r-cran-askpass_1.2.0-1_amd64.deb ...
347s Unpacking r-cran-askpass (1.2.0-1) ...
347s Selecting previously unselected package r-cran-openssl.
347s Preparing to unpack .../140-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ...
347s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
347s Selecting previously unselected package r-cran-r6.
347s Preparing to unpack .../141-r-cran-r6_2.5.1-1_all.deb ...
347s Unpacking r-cran-r6 (2.5.1-1) ...
347s Selecting previously unselected package r-cran-httr.
347s Preparing to unpack .../142-r-cran-httr_1.4.7+dfsg-1_all.deb ...
347s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
347s Selecting previously unselected package r-cran-png.
347s Preparing to unpack .../143-r-cran-png_0.1-8-1_amd64.deb ...
347s Unpacking r-cran-png (0.1-8-1) ...
347s Selecting previously unselected package r-bioc-xvector.
347s Preparing to unpack .../144-r-bioc-xvector_0.42.0-1_amd64.deb ...
347s Unpacking r-bioc-xvector (0.42.0-1) ...
347s Selecting previously unselected package r-cran-bitops.
347s Preparing to unpack .../145-r-cran-bitops_1.0-7-1_amd64.deb ...
347s Unpacking r-cran-bitops (1.0-7-1) ...
347s Selecting previously unselected package r-cran-rcurl.
347s Preparing to unpack .../146-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ...
347s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
347s Selecting previously unselected package r-bioc-genomeinfodbdata.
347s Preparing to unpack .../147-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
347s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
347s Selecting previously unselected package r-bioc-genomeinfodb.
347s Preparing to unpack .../148-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
347s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
347s Selecting previously unselected package r-cran-crayon.
347s Preparing to unpack .../149-r-cran-crayon_1.5.2-1_all.deb ...
347s Unpacking r-cran-crayon (1.5.2-1) ...
347s Selecting previously unselected package r-bioc-biostrings.
347s Preparing to unpack .../150-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
347s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
347s Selecting previously unselected package r-bioc-keggrest.
347s Preparing to unpack .../151-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
347s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
347s Selecting previously unselected package r-bioc-annotationdbi.
347s Preparing to unpack .../152-r-bioc-annotationdbi_1.64.1-1_all.deb ...
347s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
347s Selecting previously unselected package r-cran-xml.
347s Preparing to unpack .../153-r-cran-xml_3.99-0.16.1-1_amd64.deb ...
347s Unpacking r-cran-xml (3.99-0.16.1-1) ...
347s Selecting previously unselected package r-cran-xtable.
347s Preparing to unpack .../154-r-cran-xtable_1%3a1.8-4-2_all.deb ...
347s Unpacking r-cran-xtable (1:1.8-4-2) ...
347s Selecting previously unselected package r-bioc-annotate.
347s Preparing to unpack .../155-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
347s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
347s Selecting previously unselected package r-cran-formatr.
347s Preparing to unpack .../156-r-cran-formatr_1.14-1_all.deb ...
347s Unpacking r-cran-formatr (1.14-1) ...
348s Selecting previously unselected package r-cran-lambda.r.
348s Preparing to unpack .../157-r-cran-lambda.r_1.2.4-2build1_all.deb ...
348s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
348s Selecting previously unselected package r-cran-futile.options.
348s Preparing to unpack .../158-r-cran-futile.options_1.0.1-3build1_all.deb ...
348s Unpacking r-cran-futile.options (1.0.1-3build1) ...
348s Selecting previously unselected package r-cran-futile.logger.
348s Preparing to unpack .../159-r-cran-futile.logger_1.4.3-4build1_all.deb ...
348s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
348s Selecting previously unselected package r-cran-snow.
348s Preparing to unpack .../160-r-cran-snow_1%3a0.4.4-2_all.deb ...
348s Unpacking r-cran-snow (1:0.4.4-2) ...
348s Selecting previously unselected package r-cran-codetools.
348s Preparing to unpack .../161-r-cran-codetools_0.2-19-1_all.deb ...
348s Unpacking r-cran-codetools (0.2-19-1) ...
348s Selecting previously unselected package r-cran-bh.
348s Preparing to unpack .../162-r-cran-bh_1.84.0-1_all.deb ...
348s Unpacking r-cran-bh (1.84.0-1) ...
348s Selecting previously unselected package r-bioc-biocparallel.
348s Preparing to unpack .../163-r-bioc-biocparallel_1.36.0-1_amd64.deb ...
348s Unpacking r-bioc-biocparallel (1.36.0-1) ...
348s Selecting previously unselected package r-cran-lattice.
348s Preparing to unpack .../164-r-cran-lattice_0.22-5-1_amd64.deb ...
348s Unpacking r-cran-lattice (0.22-5-1) ...
348s Selecting previously unselected package r-cran-matrix.
348s Preparing to unpack .../165-r-cran-matrix_1.6-5-1_amd64.deb ...
348s Unpacking r-cran-matrix (1.6-5-1) ...
348s Selecting previously unselected package r-cran-matrixstats.
348s Preparing to unpack .../166-r-cran-matrixstats_1.2.0-1_amd64.deb ...
348s Unpacking r-cran-matrixstats (1.2.0-1) ...
348s Selecting previously unselected package r-bioc-matrixgenerics.
348s Preparing to unpack .../167-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
348s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
348s Selecting previously unselected package r-cran-abind.
348s Preparing to unpack .../168-r-cran-abind_1.4-5-2_all.deb ...
348s Unpacking r-cran-abind (1.4-5-2) ...
348s Selecting previously unselected package r-bioc-s4arrays.
348s Preparing to unpack .../169-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ...
348s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
348s Selecting previously unselected package r-bioc-sparsearray.
348s Preparing to unpack .../170-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ...
348s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
348s Selecting previously unselected package r-bioc-delayedarray.
348s Preparing to unpack .../171-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ...
348s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
348s Selecting previously unselected package r-bioc-genomicranges.
348s Preparing to unpack .../172-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ...
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348s Selecting previously unselected package r-bioc-summarizedexperiment.
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348s Selecting previously unselected package r-cran-locfit.
348s Preparing to unpack .../174-r-cran-locfit_1.5-9.8-1_amd64.deb ...
348s Unpacking r-cran-locfit (1.5-9.8-1) ...
348s Selecting previously unselected package r-cran-gtable.
348s Preparing to unpack .../175-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
348s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
348s Selecting previously unselected package r-cran-isoband.
348s Preparing to unpack .../176-r-cran-isoband_0.2.7-1_amd64.deb ...
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348s Selecting previously unselected package r-cran-mass.
348s Preparing to unpack .../177-r-cran-mass_7.3-60.0.1-1_amd64.deb ...
348s Unpacking r-cran-mass (7.3-60.0.1-1) ...
348s Selecting previously unselected package r-cran-nlme.
348s Preparing to unpack .../178-r-cran-nlme_3.1.164-1_amd64.deb ...
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348s Selecting previously unselected package r-cran-mgcv.
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349s Selecting previously unselected package r-cran-farver.
349s Preparing to unpack .../180-r-cran-farver_2.1.1-1_amd64.deb ...
349s Unpacking r-cran-farver (2.1.1-1) ...
349s Selecting previously unselected package r-cran-labeling.
349s Preparing to unpack .../181-r-cran-labeling_0.4.3-1_all.deb ...
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349s Selecting previously unselected package r-cran-colorspace.
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349s Selecting previously unselected package r-cran-munsell.
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349s Selecting previously unselected package r-cran-rcolorbrewer.
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349s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
349s Selecting previously unselected package r-cran-viridislite.
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349s Selecting previously unselected package r-cran-scales.
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349s Selecting previously unselected package r-cran-fansi.
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349s Selecting previously unselected package r-cran-magrittr.
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350s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
350s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
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350s 
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351s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
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351s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
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351s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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351s Setting up dctrl-tools (2.24-3build2) ...
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351s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
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351s Setting up pkg-config:amd64 (1.8.1-2) ...
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353s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
353s Setting up libreadline-dev:amd64 (8.2-3) ...
353s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
353s Setting up libcairo2:amd64 (1.18.0-1) ...
353s Setting up gcc-13 (13.2.0-17ubuntu2) ...
353s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
353s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
353s Setting up cpp (4:13.2.0-7ubuntu1) ...
353s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ...
353s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
353s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
353s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
353s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
353s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
353s Setting up libpng-dev:amd64 (1.6.43-1) ...
353s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
353s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
353s Setting up gcc (4:13.2.0-7ubuntu1) ...
353s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
353s Setting up r-base-core (4.3.2-1build1) ...
353s 
353s Creating config file /etc/R/Renviron with new version
353s Setting up r-cran-crayon (1.5.2-1) ...
353s Setting up r-cran-labeling (0.4.3-1) ...
353s Setting up r-cran-futile.options (1.0.1-3build1) ...
353s Setting up r-cran-lattice (0.22-5-1) ...
353s Setting up r-cran-nlme (3.1.164-1) ...
353s Setting up r-cran-farver (2.1.1-1) ...
353s Setting up r-cran-formatr (1.14-1) ...
353s Setting up r-cran-xml (3.99-0.16.1-1) ...
353s Setting up r-cran-viridislite (0.4.2-2) ...
353s Setting up r-cran-locfit (1.5-9.8-1) ...
353s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
353s Setting up r-cran-r6 (2.5.1-1) ...
353s Setting up r-cran-pkgkitten (0.2.3-1) ...
353s Setting up r-cran-magrittr (2.0.3-1) ...
353s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
353s Setting up r-cran-littler (0.3.19-1) ...
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353s Setting up r-cran-codetools (0.2-19-1) ...
353s Setting up g++-13 (13.2.0-17ubuntu2) ...
353s Setting up r-bioc-biocgenerics (0.48.1-2) ...
353s Setting up r-cran-rlang (1.1.3-1) ...
353s Setting up r-cran-matrixstats (1.2.0-1) ...
353s Setting up littler (0.3.19-1) ...
353s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
353s Setting up r-cran-sys (3.4.2-1) ...
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353s Setting up r-cran-dbi (1.2.2-1) ...
353s Setting up r-cran-fansi (1.0.5-1) ...
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353s Setting up r-cran-bit (4.0.5-1) ...
353s Setting up r-cran-xtable (1:1.8-4-2) ...
353s Setting up r-cran-cli (3.6.2-1) ...
353s Setting up gfortran (4:13.2.0-7ubuntu1) ...
353s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
353s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
353s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
353s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
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353s Setting up r-cran-bitops (1.0-7-1) ...
353s Setting up r-cran-bit64 (4.0.5-1) ...
353s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
353s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
353s Setting up r-cran-askpass (1.2.0-1) ...
353s Setting up r-cran-fastmap (1.1.1-1) ...
353s Setting up r-cran-png (0.1-8-1) ...
353s Setting up r-bioc-biobase (2.62.0-1) ...
353s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
353s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
353s Setting up r-cran-utf8 (1.2.4-1) ...
353s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
353s Setting up r-cran-cpp11 (0.4.7-1) ...
353s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
353s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
353s Setting up r-cran-isoband (0.2.7-1) ...
353s Setting up r-cran-runit (0.4.33-1) ...
353s Setting up r-cran-futile.logger (1.4.3-4build1) ...
353s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
353s Setting up r-cran-matrix (1.6-5-1) ...
353s Setting up r-cran-mgcv (1.9-1-1) ...
353s Setting up g++ (4:13.2.0-7ubuntu1) ...
353s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
353s Setting up r-cran-cachem (1.0.8-1) ...
353s Setting up build-essential (12.10ubuntu1) ...
353s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ...
353s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
353s Setting up r-bioc-iranges (2.36.0-1) ...
353s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
353s Setting up r-cran-vctrs (0.6.5-1) ...
353s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
353s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
353s Setting up r-bioc-affyio (1.72.0-1) ...
353s Setting up r-base-dev (4.3.2-1build1) ...
353s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
353s Setting up r-bioc-biocparallel (1.36.0-1) ...
353s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
353s Setting up r-cran-munsell (0.5.0-2build1) ...
353s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
353s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
353s Setting up r-cran-httr (1.4.7+dfsg-1) ...
353s Setting up r-bioc-affy (1.80.0-1) ...
353s Setting up r-cran-scales (1.3.0-1) ...
353s Setting up r-cran-memoise (2.0.1-1) ...
353s Setting up r-cran-blob (1.2.4-1) ...
353s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
353s Setting up r-bioc-xvector (0.42.0-1) ...
353s Setting up r-cran-rsqlite (2.3.4-1) ...
353s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
353s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
353s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
353s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
353s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
353s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
353s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
353s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
353s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ...
353s Setting up r-bioc-annotationdbi (1.64.1-1) ...
353s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
353s Processing triggers for libc-bin (2.39-0ubuntu2) ...
353s Processing triggers for man-db (2.12.0-3) ...
355s Processing triggers for install-info (7.1-3) ...
355s Reading package lists...
356s Building dependency tree...
356s Reading state information...
356s Starting pkgProblemResolver with broken count: 0
356s Starting 2 pkgProblemResolver with broken count: 0
356s Done
356s The following NEW packages will be installed:
356s   autopkgtest-satdep
356s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
356s Need to get 0 B/696 B of archives.
356s After this operation, 0 B of additional disk space will be used.
356s Get:1 /tmp/autopkgtest.W6S4jl/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
356s Selecting previously unselected package autopkgtest-satdep.
356s (Reading database ... 
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356s Preparing to unpack .../2-autopkgtest-satdep.deb ...
356s Unpacking autopkgtest-satdep (0) ...
356s Setting up autopkgtest-satdep (0) ...
358s (Reading database ... 102798 files and directories currently installed.)
358s Removing autopkgtest-satdep (0) ...
358s autopkgtest [01:18:41]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
358s autopkgtest [01:18:41]: test pkg-r-autopkgtest: [-----------------------
358s Test: Try to load the R library BiocGenerics
358s 
358s R version 4.3.2 (2023-10-31) -- "Eye Holes"
358s Copyright (C) 2023 The R Foundation for Statistical Computing
358s Platform: x86_64-pc-linux-gnu (64-bit)
358s 
358s R is free software and comes with ABSOLUTELY NO WARRANTY.
358s You are welcome to redistribute it under certain conditions.
358s Type 'license()' or 'licence()' for distribution details.
358s 
358s R is a collaborative project with many contributors.
358s Type 'contributors()' for more information and
358s 'citation()' on how to cite R or R packages in publications.
358s 
358s Type 'demo()' for some demos, 'help()' for on-line help, or
358s 'help.start()' for an HTML browser interface to help.
358s Type 'q()' to quit R.
358s 
358s > library('BiocGenerics')
358s 
358s Attaching package: ‘BiocGenerics’
358s 
358s The following objects are masked from ‘package:stats’:
358s 
358s     IQR, mad, sd, var, xtabs
358s 
358s The following objects are masked from ‘package:base’:
358s 
358s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
358s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
358s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
358s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
358s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
358s     table, tapply, union, unique, unsplit, which.max, which.min
358s 
358s > 
358s > 
358s Other tests are currently unsupported!
358s They will be progressively added.
359s autopkgtest [01:18:42]: test pkg-r-autopkgtest: -----------------------]
359s autopkgtest [01:18:42]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
359s pkg-r-autopkgtest    PASS
359s autopkgtest [01:18:42]: @@@@@@@@@@@@@@@@@@@@ summary
359s pkg-r-autopkgtest    PASS
369s Creating nova instance adt-noble-i386-r-bioc-biocgenerics-20240322-011243-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...