0s autopkgtest [01:06:19]: starting date and time: 2024-03-22 01:06:19+0000 0s autopkgtest [01:06:19]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [01:06:19]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3f8bbv5_/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-ballgown --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-34.secgroup --name adt-noble-i386-r-bioc-ballgown-20240322-010619-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 357s autopkgtest [01:12:16]: testbed dpkg architecture: amd64 357s autopkgtest [01:12:16]: testbed apt version: 2.7.12 358s autopkgtest [01:12:17]: test architecture: i386 358s autopkgtest [01:12:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 358s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 358s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 358s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 358s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 358s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB] 358s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 358s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 358s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 358s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 358s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 358s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 358s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 358s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB] 358s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 358s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 358s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 358s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 361s Fetched 11.3 MB in 1s (8304 kB/s) 361s Reading package lists... 363s Reading package lists... 363s Building dependency tree... 363s Reading state information... 363s Calculating upgrade... 364s The following packages will be upgraded: 364s cloud-init fonts-ubuntu-console python3-markupsafe 364s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 364s Need to get 629 kB of archives. 364s After this operation, 11.3 kB disk space will be freed. 364s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 364s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 364s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 364s Preconfiguring packages ... 364s Fetched 629 kB in 0s (18.8 MB/s) 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 364s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 364s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 364s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 364s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 364s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 365s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 365s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 365s Setting up cloud-init (24.1.2-0ubuntu1) ... 366s Setting up python3-markupsafe (2.1.5-1build1) ... 366s Processing triggers for man-db (2.12.0-3) ... 367s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 367s Reading package lists... 367s Building dependency tree... 367s Reading state information... 368s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 368s sh: Attempting to set up Debian/Ubuntu apt sources automatically 368s sh: Distribution appears to be Ubuntu 369s Reading package lists... 369s Building dependency tree... 369s Reading state information... 370s eatmydata is already the newest version (131-1). 370s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 370s Reading package lists... 370s Building dependency tree... 370s Reading state information... 370s dbus is already the newest version (1.14.10-4ubuntu1). 370s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 370s Reading package lists... 370s Building dependency tree... 370s Reading state information... 371s rng-tools-debian is already the newest version (2.4). 371s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 371s Reading package lists... 371s Building dependency tree... 371s Reading state information... 371s The following packages will be REMOVED: 371s cloud-init* python3-configobj* python3-debconf* 371s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 371s After this operation, 3256 kB disk space will be freed. 371s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 371s Removing cloud-init (24.1.2-0ubuntu1) ... 372s Removing python3-configobj (5.0.8-3) ... 372s Removing python3-debconf (1.5.86) ... 372s Processing triggers for man-db (2.12.0-3) ... 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 372s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 373s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 373s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 373s invoke-rc.d: policy-rc.d denied execution of try-restart. 373s Reading package lists... 373s Building dependency tree... 373s Reading state information... 374s linux-generic is already the newest version (6.8.0-11.11+1). 374s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 374s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 374s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 374s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 376s Reading package lists... 376s Reading package lists... 376s Building dependency tree... 376s Reading state information... 377s Calculating upgrade... 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s Reading package lists... 377s Building dependency tree... 377s Reading state information... 377s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 377s autopkgtest [01:12:36]: rebooting testbed after setup commands that affected boot 398s autopkgtest [01:12:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 398s autopkgtest [01:12:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ballgown 399s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ballgown 2.34.0+dfsg-1 (dsc) [2301 B] 399s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ballgown 2.34.0+dfsg-1 (tar) [2497 kB] 399s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ballgown 2.34.0+dfsg-1 (diff) [5660 B] 399s gpgv: Signature made Fri Dec 1 09:27:33 2023 UTC 399s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 399s gpgv: issuer "tille@debian.org" 399s gpgv: Can't check signature: No public key 399s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ballgown_2.34.0+dfsg-1.dsc: no acceptable signature found 400s autopkgtest [01:12:59]: testing package r-bioc-ballgown version 2.34.0+dfsg-1 401s autopkgtest [01:13:00]: build not needed 404s autopkgtest [01:13:03]: test pkg-r-autopkgtest: preparing testbed 409s Note, using file '/tmp/autopkgtest.0NNWJe/1-autopkgtest-satdep.dsc' to get the build dependencies 409s Reading package lists... 409s Building dependency tree... 409s Reading state information... 410s Starting pkgProblemResolver with broken count: 0 410s Starting 2 pkgProblemResolver with broken count: 0 410s Done 410s The following NEW packages will be installed: 410s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 410s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 410s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-x86-64-linux-gnu 410s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu 410s gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu 410s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev 410s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 410s libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 410s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 410s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 410s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 410s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 410s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 410s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 410s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 410s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 410s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 410s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 410s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 410s linux-libc-dev littler node-normalize.css pkg-config pkg-r-autopkgtest 410s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 410s r-bioc-annotationdbi r-bioc-ballgown r-bioc-biobase r-bioc-biocgenerics 410s r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray 410s r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 410s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 410s r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 410s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 410s r-bioc-summarizedexperiment r-bioc-sva r-bioc-xvector r-bioc-zlibbioc 410s r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops 410s r-cran-blob r-cran-brio r-cran-cachem r-cran-callr r-cran-cli 410s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 410s r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate 410s r-cran-fansi r-cran-fastmap r-cran-formatr r-cran-fs r-cran-futile.logger 410s r-cran-futile.options r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite 410s r-cran-knitr r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler 410s r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-matrix 410s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme 410s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 410s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 410s r-cran-processx r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 410s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang 410s r-cran-rprojroot r-cran-rsqlite r-cran-snow r-cran-statmod r-cran-survival 410s r-cran-sys r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs 410s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 410s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 410s 0 upgraded, 226 newly installed, 0 to remove and 0 not upgraded. 410s Need to get 279 MB of archives. 410s After this operation, 852 MB of additional disk space will be used. 410s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 410s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 410s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 410s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 410s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 410s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 410s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 410s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 410s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 410s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 410s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 410s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 410s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 410s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 410s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 410s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 410s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 410s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 410s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 410s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 410s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 410s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 410s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 410s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 411s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 411s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 411s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 411s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 411s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 411s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 411s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 411s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 411s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 411s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 411s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 411s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 411s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 411s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 411s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 411s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 411s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 411s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 411s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 411s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 411s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 411s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 411s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 411s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 411s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 411s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 411s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 411s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 411s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 411s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 411s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 411s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 411s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 411s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 411s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 411s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 411s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 411s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 411s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 411s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 411s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 411s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 411s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 411s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 411s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 411s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 411s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 411s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 411s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 411s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 411s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 411s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 411s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 411s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 411s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 411s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 411s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 411s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 411s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 411s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 411s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 411s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 411s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 411s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 411s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 411s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 411s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 411s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 411s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 411s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 411s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 411s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 411s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 411s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 411s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 411s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 411s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 411s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 411s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 411s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 411s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 411s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 411s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 411s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 411s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 411s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 411s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 411s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 411s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 411s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 411s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 411s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 411s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 411s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 411s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 411s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 411s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 412s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 412s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 412s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 412s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 412s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 412s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 412s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 412s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 412s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 412s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 412s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 412s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 412s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 412s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 412s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 412s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 412s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 412s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 412s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 412s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 412s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 412s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 412s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 412s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 412s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 412s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 412s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 412s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 412s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 412s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 412s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 412s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 412s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 412s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 412s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 412s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 412s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 412s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 412s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 412s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 412s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 412s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 412s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 412s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 412s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 412s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 412s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB] 412s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genefilter amd64 1.84.0-1 [1123 kB] 412s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 412s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 412s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 412s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 412s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 412s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 412s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 412s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 412s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 412s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB] 412s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-locfit amd64 1.5-9.8-1 [513 kB] 412s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 412s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 412s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-edger amd64 4.0.16+dfsg-1 [1149 kB] 412s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sva amd64 3.50.0-1 [465 kB] 412s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 412s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 412s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 412s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 412s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 412s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 412s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 412s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 412s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 412s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 412s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 412s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 412s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 412s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ballgown all 2.34.0+dfsg-1 [2946 kB] 412s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 412s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 412s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 412s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 412s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 412s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 412s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 412s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 412s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 412s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 412s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 412s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 412s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 412s Get:212 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 412s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 412s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 412s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 412s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 412s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 412s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 412s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 412s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 412s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 412s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 412s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 412s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 412s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 412s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 413s Preconfiguring packages ... 413s Fetched 279 MB in 2s (134 MB/s) 413s Selecting previously unselected package libc-dev-bin. 414s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 414s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 414s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 414s Selecting previously unselected package linux-libc-dev:amd64. 414s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 414s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 414s Selecting previously unselected package libcrypt-dev:amd64. 414s Preparing to unpack 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libcc1-0:amd64. 415s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 415s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 415s Selecting previously unselected package libgomp1:amd64. 415s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 415s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 415s Selecting previously unselected package libitm1:amd64. 415s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 415s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 415s Selecting previously unselected package libatomic1:amd64. 415s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 415s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 415s Selecting previously unselected package libasan8:amd64. 415s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 415s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 415s Selecting previously unselected package liblsan0:amd64. 415s 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.../033-build-essential_12.10ubuntu1_amd64.deb ... 416s Unpacking build-essential (12.10ubuntu1) ... 416s Selecting previously unselected package dctrl-tools. 416s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 416s Unpacking dctrl-tools (2.24-3build2) ... 416s Selecting previously unselected package fonts-dejavu-mono. 416s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 416s Unpacking fonts-dejavu-mono (2.37-8) ... 416s Selecting previously unselected package fonts-dejavu-core. 416s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 416s Unpacking fonts-dejavu-core (2.37-8) ... 416s Selecting previously unselected package fontconfig-config. 416s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 416s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 416s Selecting previously unselected package libfontconfig1:amd64. 416s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 416s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 416s Selecting previously unselected package fontconfig. 416s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 416s Unpacking fontconfig (2.15.0-1ubuntu1) ... 417s Selecting previously unselected package fonts-glyphicons-halflings. 417s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 417s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 417s Selecting previously unselected package fonts-mathjax. 417s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 417s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 417s Selecting previously unselected package libgfortran5:amd64. 417s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 417s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 417s Selecting previously unselected package libgfortran-13-dev:amd64. 417s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 417s 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Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 420s Selecting previously unselected package libpixman-1-0:amd64. 420s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_amd64.deb ... 420s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 420s Selecting previously unselected package libxcb-render0:amd64. 420s Preparing to unpack .../055-libxcb-render0_1.15-1_amd64.deb ... 420s Unpacking libxcb-render0:amd64 (1.15-1) ... 420s Selecting previously unselected package libxcb-shm0:amd64. 420s Preparing to unpack .../056-libxcb-shm0_1.15-1_amd64.deb ... 420s Unpacking libxcb-shm0:amd64 (1.15-1) ... 420s Selecting previously unselected package libxrender1:amd64. 420s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 420s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 420s Selecting previously unselected package libcairo2:amd64. 420s Preparing to unpack .../058-libcairo2_1.18.0-1_amd64.deb ... 420s Unpacking libcairo2:amd64 (1.18.0-1) ... 420s Selecting previously unselected package libdatrie1:amd64. 420s Preparing to unpack .../059-libdatrie1_0.2.13-3_amd64.deb ... 420s Unpacking libdatrie1:amd64 (0.2.13-3) ... 420s Selecting previously unselected package libdeflate0:amd64. 420s Preparing to unpack .../060-libdeflate0_1.19-1_amd64.deb ... 420s Unpacking libdeflate0:amd64 (1.19-1) ... 420s Selecting previously unselected package libgraphite2-3:amd64. 420s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_amd64.deb ... 420s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 420s Selecting previously unselected package libharfbuzz0b:amd64. 420s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_amd64.deb ... 420s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 420s Selecting previously unselected package x11-common. 420s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu2_all.deb ... 420s Unpacking x11-common (1:7.7+23ubuntu2) ... 420s Selecting previously unselected package libice6:amd64. 420s Preparing to unpack .../064-libice6_2%3a1.0.10-1build2_amd64.deb 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libjpeg8-dev:amd64 (8c-2ubuntu11) ... 421s Selecting previously unselected package libjpeg-dev:amd64. 421s Preparing to unpack .../070-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 421s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 421s Selecting previously unselected package libjs-bootstrap. 421s Preparing to unpack .../071-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 421s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 421s Selecting previously unselected package libjs-highlight.js. 421s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 421s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 421s Selecting previously unselected package libjs-jquery. 421s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 421s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 421s Selecting previously unselected package libjs-jquery-datatables. 421s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 421s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 421s Selecting previously unselected package liblapack3:amd64. 421s Preparing to unpack .../075-liblapack3_3.12.0-3_amd64.deb ... 421s Unpacking liblapack3:amd64 (3.12.0-3) ... 421s Selecting previously unselected package liblapack-dev:amd64. 421s Preparing to unpack .../076-liblapack-dev_3.12.0-3_amd64.deb ... 421s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 421s Selecting previously unselected package liblerc4:amd64. 421s Preparing to unpack .../077-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 421s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 421s Selecting previously unselected package libncurses-dev:amd64. 421s Preparing to unpack .../078-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 421s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 421s Selecting previously unselected package libthai-data. 421s Preparing to unpack .../079-libthai-data_0.1.29-2_all.deb ... 421s Unpacking libthai-data (0.1.29-2) ... 421s Selecting previously unselected package libthai0:amd64. 421s Preparing to unpack .../080-libthai0_0.1.29-2_amd64.deb ... 421s Unpacking libthai0:amd64 (0.1.29-2) ... 421s Selecting previously unselected package libpango-1.0-0:amd64. 421s Preparing to unpack .../081-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 421s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 421s Selecting previously unselected package libpangoft2-1.0-0:amd64. 421s Preparing to unpack .../082-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 421s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 421s Selecting previously unselected package libpangocairo-1.0-0:amd64. 421s Preparing to unpack .../083-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 421s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 421s Selecting previously unselected package libpaper1:amd64. 421s Preparing to unpack .../084-libpaper1_1.1.29_amd64.deb ... 421s Unpacking libpaper1:amd64 (1.1.29) ... 421s Selecting previously unselected package libpaper-utils. 421s Preparing to unpack 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.../090-libpkgconf3_1.8.1-2_amd64.deb ... 422s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 422s Selecting previously unselected package zlib1g-dev:amd64. 422s Preparing to unpack .../091-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 422s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 422s Selecting previously unselected package libpng-dev:amd64. 422s Preparing to unpack .../092-libpng-dev_1.6.43-1_amd64.deb ... 422s Unpacking libpng-dev:amd64 (1.6.43-1) ... 422s Selecting previously unselected package libreadline-dev:amd64. 422s Preparing to unpack .../093-libreadline-dev_8.2-3_amd64.deb ... 422s Unpacking libreadline-dev:amd64 (8.2-3) ... 422s Selecting previously unselected package libsharpyuv0:amd64. 422s Preparing to unpack .../094-libsharpyuv0_1.3.2-0.4_amd64.deb ... 422s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 422s Selecting previously unselected package libsm6:amd64. 422s Preparing to unpack .../095-libsm6_2%3a1.2.3-1build2_amd64.deb ... 422s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 422s Selecting previously unselected package libtcl8.6:amd64. 422s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 422s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 422s Selecting previously unselected package libjbig0:amd64. 422s Preparing to unpack .../097-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 422s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 422s Selecting previously unselected package libwebp7:amd64. 422s Preparing to unpack .../098-libwebp7_1.3.2-0.4_amd64.deb ... 422s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 422s Selecting previously unselected package libtiff6:amd64. 422s Preparing to unpack .../099-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 422s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 422s Selecting previously unselected package libxft2:amd64. 422s Preparing to unpack .../100-libxft2_2.3.6-1_amd64.deb ... 422s Unpacking libxft2:amd64 (2.3.6-1) ... 422s Selecting previously unselected package libxss1:amd64. 422s Preparing to unpack .../101-libxss1_1%3a1.2.3-1build2_amd64.deb ... 422s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 422s Selecting previously unselected package libtk8.6:amd64. 422s Preparing to unpack .../102-libtk8.6_8.6.13-2_amd64.deb ... 422s Unpacking libtk8.6:amd64 (8.6.13-2) ... 422s Selecting previously unselected package libxt6:amd64. 422s Preparing to unpack .../103-libxt6_1%3a1.2.1-1.1_amd64.deb ... 422s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 422s Selecting previously unselected package zip. 422s Preparing to unpack .../104-zip_3.0-13_amd64.deb ... 422s Unpacking zip (3.0-13) ... 422s Selecting previously unselected package unzip. 422s Preparing to unpack .../105-unzip_6.0-28ubuntu3_amd64.deb ... 422s Unpacking unzip (6.0-28ubuntu3) ... 422s Selecting previously unselected package xdg-utils. 422s Preparing to unpack .../106-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 422s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 422s Selecting previously unselected package r-base-core. 422s Preparing to unpack .../107-r-base-core_4.3.2-1build1_amd64.deb ... 422s Unpacking r-base-core (4.3.2-1build1) ... 422s Selecting previously unselected package r-cran-littler. 422s Preparing to unpack .../108-r-cran-littler_0.3.19-1_amd64.deb ... 422s Unpacking r-cran-littler (0.3.19-1) ... 422s Selecting previously unselected package littler. 422s Preparing to unpack .../109-littler_0.3.19-1_all.deb ... 422s Unpacking littler (0.3.19-1) ... 423s Selecting previously unselected package node-normalize.css. 423s Preparing to unpack .../110-node-normalize.css_8.0.1-5_all.deb ... 423s Unpacking node-normalize.css (8.0.1-5) ... 423s Selecting previously unselected package pkgconf-bin. 423s Preparing to unpack .../111-pkgconf-bin_1.8.1-2_amd64.deb ... 423s Unpacking pkgconf-bin (1.8.1-2) ... 423s Selecting previously unselected package pkgconf:amd64. 423s Preparing to unpack .../112-pkgconf_1.8.1-2_amd64.deb ... 423s Unpacking pkgconf:amd64 (1.8.1-2) ... 423s Selecting previously unselected package pkg-config:amd64. 423s Preparing to unpack .../113-pkg-config_1.8.1-2_amd64.deb ... 423s Unpacking pkg-config:amd64 (1.8.1-2) ... 423s Selecting previously unselected package liblzma-dev:amd64. 423s Preparing to unpack .../114-liblzma-dev_5.4.5-0.3_amd64.deb ... 423s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 423s Selecting previously unselected package r-base-dev. 423s Preparing to unpack .../115-r-base-dev_4.3.2-1build1_all.deb ... 423s Unpacking r-base-dev (4.3.2-1build1) ... 423s Selecting previously unselected package pkg-r-autopkgtest. 423s Preparing to unpack .../116-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 423s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 423s Selecting previously unselected package r-bioc-biocgenerics. 423s Preparing to unpack .../117-r-bioc-biocgenerics_0.48.1-2_all.deb ... 423s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 423s Selecting previously unselected package r-bioc-biobase. 423s Preparing to unpack .../118-r-bioc-biobase_2.62.0-1_amd64.deb ... 423s Unpacking r-bioc-biobase (2.62.0-1) ... 423s Selecting previously unselected package r-bioc-s4vectors. 423s Preparing to unpack .../119-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 423s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 423s Selecting previously unselected package r-bioc-iranges. 423s Preparing to unpack .../120-r-bioc-iranges_2.36.0-1_amd64.deb ... 423s Unpacking r-bioc-iranges (2.36.0-1) ... 423s Selecting previously unselected package r-cran-dbi. 423s Preparing to unpack .../121-r-cran-dbi_1.2.2-1_all.deb ... 423s Unpacking r-cran-dbi (1.2.2-1) ... 423s Selecting previously unselected package r-cran-bit. 423s Preparing to unpack .../122-r-cran-bit_4.0.5-1_amd64.deb ... 423s Unpacking r-cran-bit (4.0.5-1) ... 423s Selecting previously unselected package r-cran-bit64. 423s Preparing to unpack .../123-r-cran-bit64_4.0.5-1_amd64.deb ... 423s Unpacking r-cran-bit64 (4.0.5-1) ... 423s Selecting previously unselected package r-cran-rlang. 423s Preparing to unpack .../124-r-cran-rlang_1.1.3-1_amd64.deb ... 423s Unpacking r-cran-rlang (1.1.3-1) ... 423s Selecting previously unselected package r-cran-cli. 423s Preparing to unpack .../125-r-cran-cli_3.6.2-1_amd64.deb ... 423s Unpacking r-cran-cli (3.6.2-1) ... 423s Selecting previously unselected package r-cran-glue. 423s Preparing to unpack .../126-r-cran-glue_1.7.0-1_amd64.deb ... 423s Unpacking r-cran-glue (1.7.0-1) ... 423s Selecting previously unselected package r-cran-lifecycle. 423s Preparing to unpack .../127-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 423s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 423s Selecting previously unselected package r-cran-vctrs. 423s Preparing to unpack .../128-r-cran-vctrs_0.6.5-1_amd64.deb ... 423s Unpacking r-cran-vctrs (0.6.5-1) ... 423s Selecting previously unselected package r-cran-blob. 423s Preparing to unpack .../129-r-cran-blob_1.2.4-1_all.deb ... 423s Unpacking r-cran-blob (1.2.4-1) ... 423s Selecting previously unselected package r-cran-fastmap. 423s Preparing to unpack .../130-r-cran-fastmap_1.1.1-1_amd64.deb ... 423s Unpacking r-cran-fastmap (1.1.1-1) ... 423s Selecting previously unselected package r-cran-cachem. 423s Preparing to unpack .../131-r-cran-cachem_1.0.8-1_amd64.deb ... 423s Unpacking r-cran-cachem (1.0.8-1) ... 423s Selecting previously unselected package r-cran-memoise. 423s Preparing to unpack .../132-r-cran-memoise_2.0.1-1_all.deb ... 423s Unpacking r-cran-memoise (2.0.1-1) ... 423s Selecting previously unselected package r-cran-pkgconfig. 423s Preparing to unpack .../133-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 423s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 423s Selecting previously unselected package r-cran-plogr. 423s Preparing to unpack .../134-r-cran-plogr_0.2.0-3build1_all.deb ... 423s Unpacking r-cran-plogr (0.2.0-3build1) ... 424s Selecting previously unselected package r-cran-cpp11. 424s Preparing to unpack .../135-r-cran-cpp11_0.4.7-1_all.deb ... 424s Unpacking r-cran-cpp11 (0.4.7-1) ... 424s Selecting previously unselected package r-cran-rsqlite. 424s Preparing to unpack .../136-r-cran-rsqlite_2.3.4-1_amd64.deb ... 424s Unpacking r-cran-rsqlite (2.3.4-1) ... 424s Selecting previously unselected package r-cran-curl. 424s Preparing to unpack .../137-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 424s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 424s Selecting previously unselected package r-cran-jsonlite. 424s Preparing to unpack .../138-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 424s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 424s Selecting previously unselected package r-cran-mime. 424s Preparing to unpack .../139-r-cran-mime_0.12-1_amd64.deb ... 424s Unpacking r-cran-mime (0.12-1) ... 424s Selecting previously unselected package r-cran-sys. 424s Preparing to unpack .../140-r-cran-sys_3.4.2-1_amd64.deb ... 424s Unpacking r-cran-sys (3.4.2-1) ... 424s Selecting previously unselected package r-cran-askpass. 424s Preparing to unpack .../141-r-cran-askpass_1.2.0-1_amd64.deb ... 424s Unpacking r-cran-askpass (1.2.0-1) ... 424s Selecting previously unselected package r-cran-openssl. 424s Preparing to unpack .../142-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 424s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 424s Selecting previously unselected package r-cran-r6. 424s Preparing to unpack .../143-r-cran-r6_2.5.1-1_all.deb ... 424s Unpacking r-cran-r6 (2.5.1-1) ... 424s Selecting previously unselected package r-cran-httr. 424s Preparing to unpack .../144-r-cran-httr_1.4.7+dfsg-1_all.deb ... 424s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 424s Selecting previously unselected package r-cran-png. 424s Preparing to unpack .../145-r-cran-png_0.1-8-1_amd64.deb ... 424s Unpacking r-cran-png (0.1-8-1) ... 424s Selecting previously unselected package r-bioc-zlibbioc. 424s Preparing to unpack .../146-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 424s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 424s Selecting previously unselected package r-bioc-xvector. 424s Preparing to unpack .../147-r-bioc-xvector_0.42.0-1_amd64.deb ... 424s Unpacking r-bioc-xvector (0.42.0-1) ... 424s Selecting previously unselected package r-cran-bitops. 424s Preparing to unpack .../148-r-cran-bitops_1.0-7-1_amd64.deb ... 424s Unpacking r-cran-bitops (1.0-7-1) ... 424s Selecting previously unselected package r-cran-rcurl. 424s Preparing to unpack .../149-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 424s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 424s Selecting previously unselected package r-bioc-genomeinfodbdata. 424s Preparing to unpack .../150-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 424s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 424s Selecting previously unselected package r-bioc-genomeinfodb. 424s Preparing to unpack .../151-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 424s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 424s Selecting previously unselected package r-cran-crayon. 424s Preparing to unpack .../152-r-cran-crayon_1.5.2-1_all.deb ... 424s Unpacking r-cran-crayon (1.5.2-1) ... 424s Selecting previously unselected package r-bioc-biostrings. 424s Preparing to unpack .../153-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 424s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 424s Selecting previously unselected package r-bioc-keggrest. 424s Preparing to unpack .../154-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 424s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 424s Selecting previously unselected package r-bioc-annotationdbi. 424s Preparing to unpack .../155-r-bioc-annotationdbi_1.64.1-1_all.deb ... 424s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 425s Selecting previously unselected package r-cran-xml. 425s Preparing to unpack .../156-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 425s Unpacking r-cran-xml (3.99-0.16.1-1) ... 425s Selecting previously unselected package r-cran-xtable. 425s Preparing to unpack .../157-r-cran-xtable_1%3a1.8-4-2_all.deb ... 425s Unpacking r-cran-xtable (1:1.8-4-2) ... 425s Selecting previously unselected package r-bioc-annotate. 425s Preparing to unpack .../158-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 425s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 425s Selecting previously unselected package r-bioc-genomicranges. 425s Preparing to unpack .../159-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 425s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 425s Selecting previously unselected package r-cran-rcolorbrewer. 425s Preparing to unpack .../160-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 425s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 425s Selecting previously unselected package r-cran-lattice. 425s Preparing to unpack .../161-r-cran-lattice_0.22-5-1_amd64.deb ... 425s Unpacking r-cran-lattice (0.22-5-1) ... 425s Selecting previously unselected package r-cran-nlme. 425s Preparing to unpack .../162-r-cran-nlme_3.1.164-1_amd64.deb ... 425s Unpacking r-cran-nlme (3.1.164-1) ... 425s Selecting previously unselected package r-cran-matrix. 425s Preparing to unpack .../163-r-cran-matrix_1.6-5-1_amd64.deb ... 425s Unpacking r-cran-matrix (1.6-5-1) ... 425s Selecting previously unselected package r-cran-mgcv. 425s Preparing to unpack .../164-r-cran-mgcv_1.9-1-1_amd64.deb ... 425s Unpacking r-cran-mgcv (1.9-1-1) ... 425s Selecting previously unselected package r-cran-matrixstats. 425s Preparing to unpack .../165-r-cran-matrixstats_1.2.0-1_amd64.deb ... 425s Unpacking r-cran-matrixstats (1.2.0-1) ... 425s Selecting previously unselected package r-bioc-matrixgenerics. 425s Preparing to unpack .../166-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 425s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 425s Selecting previously unselected package r-cran-survival. 425s Preparing to unpack .../167-r-cran-survival_3.5-8-1_amd64.deb ... 425s Unpacking r-cran-survival (3.5-8-1) ... 425s Selecting previously unselected package r-bioc-genefilter. 425s Preparing to unpack .../168-r-bioc-genefilter_1.84.0-1_amd64.deb ... 425s Unpacking r-bioc-genefilter (1.84.0-1) ... 425s Selecting previously unselected package r-cran-formatr. 425s Preparing to unpack .../169-r-cran-formatr_1.14-1_all.deb ... 425s Unpacking r-cran-formatr (1.14-1) ... 425s Selecting previously unselected package r-cran-lambda.r. 425s Preparing to unpack .../170-r-cran-lambda.r_1.2.4-2build1_all.deb ... 425s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 425s Selecting previously unselected package r-cran-futile.options. 425s Preparing to unpack .../171-r-cran-futile.options_1.0.1-3build1_all.deb ... 425s Unpacking r-cran-futile.options (1.0.1-3build1) ... 425s Selecting previously unselected package r-cran-futile.logger. 425s Preparing to unpack .../172-r-cran-futile.logger_1.4.3-4build1_all.deb ... 425s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 425s Selecting previously unselected package r-cran-snow. 425s Preparing to unpack .../173-r-cran-snow_1%3a0.4.4-2_all.deb ... 425s Unpacking r-cran-snow (1:0.4.4-2) ... 425s Selecting previously unselected package r-cran-codetools. 425s Preparing to unpack .../174-r-cran-codetools_0.2-19-1_all.deb ... 425s Unpacking r-cran-codetools (0.2-19-1) ... 425s Selecting previously unselected package r-cran-bh. 425s Preparing to unpack .../175-r-cran-bh_1.84.0-1_all.deb ... 425s Unpacking r-cran-bh (1.84.0-1) ... 425s Selecting previously unselected package r-bioc-biocparallel. 426s Preparing to unpack .../176-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 426s Unpacking r-bioc-biocparallel (1.36.0-1) ... 426s Selecting previously unselected package r-cran-statmod. 426s Preparing to unpack .../177-r-cran-statmod_1.5.0-1_amd64.deb ... 426s Unpacking r-cran-statmod (1.5.0-1) ... 426s Selecting previously unselected package r-bioc-limma. 426s Preparing to unpack .../178-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 426s Selecting previously unselected package r-cran-locfit. 426s Preparing to unpack .../179-r-cran-locfit_1.5-9.8-1_amd64.deb ... 426s Unpacking r-cran-locfit (1.5-9.8-1) ... 426s Selecting previously unselected package r-cran-pkgkitten. 426s Preparing to unpack .../180-r-cran-pkgkitten_0.2.3-1_all.deb ... 426s Unpacking r-cran-pkgkitten (0.2.3-1) ... 426s Selecting previously unselected package r-cran-rcpp. 426s Preparing to unpack .../181-r-cran-rcpp_1.0.12-1_amd64.deb ... 426s Unpacking r-cran-rcpp (1.0.12-1) ... 426s Selecting previously unselected package r-bioc-edger. 426s Preparing to unpack .../182-r-bioc-edger_4.0.16+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 426s Selecting previously unselected package r-bioc-sva. 426s Preparing to unpack .../183-r-bioc-sva_3.50.0-1_amd64.deb ... 426s Unpacking r-bioc-sva (3.50.0-1) ... 426s Selecting previously unselected package r-bioc-rhtslib. 426s Preparing to unpack .../184-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 426s Selecting previously unselected package r-bioc-rsamtools. 426s Preparing to unpack .../185-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 426s Selecting previously unselected package r-cran-abind. 426s Preparing to unpack .../186-r-cran-abind_1.4-5-2_all.deb ... 426s Unpacking r-cran-abind (1.4-5-2) ... 426s Selecting previously unselected package r-bioc-s4arrays. 426s Preparing to unpack .../187-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 426s Selecting previously unselected package r-bioc-sparsearray. 426s Preparing to unpack .../188-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 426s Selecting previously unselected package r-bioc-delayedarray. 426s Preparing to unpack .../189-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 426s Selecting previously unselected package r-bioc-summarizedexperiment. 426s Preparing to unpack .../190-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 426s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 426s Selecting previously unselected package r-bioc-genomicalignments. 426s Preparing to unpack .../191-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 426s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 426s Selecting previously unselected package r-bioc-biocio. 426s Preparing to unpack .../192-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 426s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 426s Selecting previously unselected package r-cran-rjson. 426s Preparing to unpack .../193-r-cran-rjson_0.2.21-1_amd64.deb ... 426s Unpacking r-cran-rjson (0.2.21-1) ... 426s Selecting previously unselected package r-cran-yaml. 426s Preparing to unpack .../194-r-cran-yaml_2.3.8-1_amd64.deb ... 426s Unpacking r-cran-yaml (2.3.8-1) ... 427s Selecting previously unselected package r-cran-restfulr. 427s Preparing to unpack .../195-r-cran-restfulr_0.0.15-1_amd64.deb ... 427s Unpacking r-cran-restfulr (0.0.15-1) ... 427s Selecting previously unselected package r-bioc-rtracklayer. 427s Preparing to unpack .../196-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 427s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 427s Selecting previously unselected package r-bioc-ballgown. 427s Preparing to unpack .../197-r-bioc-ballgown_2.34.0+dfsg-1_all.deb ... 427s Unpacking r-bioc-ballgown (2.34.0+dfsg-1) ... 427s Selecting previously unselected package r-cran-brio. 427s Preparing to unpack .../198-r-cran-brio_1.1.4-1_amd64.deb ... 427s Unpacking r-cran-brio (1.1.4-1) ... 427s Selecting previously unselected package r-cran-ps. 427s Preparing to unpack .../199-r-cran-ps_1.7.6-1_amd64.deb ... 427s Unpacking r-cran-ps (1.7.6-1) ... 427s Selecting previously unselected package r-cran-processx. 427s Preparing to unpack .../200-r-cran-processx_3.8.3-1_amd64.deb ... 427s Unpacking r-cran-processx (3.8.3-1) ... 427s Selecting previously unselected package r-cran-callr. 427s Preparing to unpack .../201-r-cran-callr_3.7.3-2_all.deb ... 427s Unpacking r-cran-callr (3.7.3-2) ... 427s Selecting previously unselected package r-cran-commonmark. 427s Preparing to unpack .../202-r-cran-commonmark_1.9.1-1_amd64.deb ... 427s Unpacking r-cran-commonmark (1.9.1-1) ... 427s Selecting previously unselected package r-cran-desc. 427s Preparing to unpack .../203-r-cran-desc_1.4.3-1_all.deb ... 427s Unpacking r-cran-desc (1.4.3-1) ... 427s Selecting previously unselected package r-cran-diffobj. 427s Preparing to unpack .../204-r-cran-diffobj_0.3.5-1_amd64.deb ... 427s Unpacking r-cran-diffobj (0.3.5-1) ... 427s Selecting previously unselected package r-cran-digest. 427s Preparing to unpack .../205-r-cran-digest_0.6.34-1_amd64.deb ... 427s Unpacking r-cran-digest (0.6.34-1) ... 427s Selecting previously unselected package r-cran-evaluate. 427s Preparing to unpack .../206-r-cran-evaluate_0.23-1_all.deb ... 427s Unpacking r-cran-evaluate (0.23-1) ... 427s Selecting previously unselected package r-cran-fansi. 427s Preparing to unpack .../207-r-cran-fansi_1.0.5-1_amd64.deb ... 427s Unpacking r-cran-fansi (1.0.5-1) ... 427s Selecting previously unselected package r-cran-fs. 427s Preparing to unpack .../208-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 427s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 427s Selecting previously unselected package r-cran-xfun. 427s Preparing to unpack .../209-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 427s Unpacking r-cran-xfun (0.41+dfsg-1) ... 427s Selecting previously unselected package r-cran-highr. 427s Preparing to unpack .../210-r-cran-highr_0.10+dfsg-1_all.deb ... 427s Unpacking r-cran-highr (0.10+dfsg-1) ... 427s Selecting previously unselected package libjs-mathjax. 427s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 427s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 428s Selecting previously unselected package r-cran-knitr. 428s Preparing to unpack .../212-r-cran-knitr_1.45+dfsg-1_all.deb ... 428s Unpacking r-cran-knitr (1.45+dfsg-1) ... 428s Selecting previously unselected package r-cran-magrittr. 428s Preparing to unpack .../213-r-cran-magrittr_2.0.3-1_amd64.deb ... 428s Unpacking r-cran-magrittr (2.0.3-1) ... 428s Selecting previously unselected package r-cran-markdown. 428s Preparing to unpack .../214-r-cran-markdown_1.12+dfsg-1_all.deb ... 428s Unpacking r-cran-markdown (1.12+dfsg-1) ... 428s Selecting previously unselected package r-cran-utf8. 428s Preparing to unpack .../215-r-cran-utf8_1.2.4-1_amd64.deb ... 428s Unpacking r-cran-utf8 (1.2.4-1) ... 428s Selecting previously unselected package r-cran-pillar. 428s Preparing to unpack .../216-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 428s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 428s Selecting previously unselected package r-cran-pkgbuild. 428s Preparing to unpack .../217-r-cran-pkgbuild_1.4.3-1_all.deb ... 428s Unpacking r-cran-pkgbuild (1.4.3-1) ... 428s Selecting previously unselected package r-cran-rprojroot. 428s Preparing to unpack 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previously unselected package r-cran-waldo. 429s Preparing to unpack .../224-r-cran-waldo_0.5.2-1build1_all.deb ... 429s Unpacking r-cran-waldo (0.5.2-1build1) ... 429s Selecting previously unselected package r-cran-testthat. 429s Preparing to unpack .../225-r-cran-testthat_3.2.1-1_amd64.deb ... 429s Unpacking r-cran-testthat (3.2.1-1) ... 429s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 429s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 429s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 429s Setting up libpaper1:amd64 (1.1.29) ... 429s 429s Creating config file /etc/papersize with new version 429s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 429s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 429s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 429s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 429s Setting up libdatrie1:amd64 (0.2.13-3) ... 429s Setting up libxcb-render0:amd64 (1.15-1) ... 429s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 429s Setting up unzip 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libice6:amd64 (2:1.0.10-1build2) ... 429s Setting up liblapack3:amd64 (3.12.0-3) ... 429s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 429s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 429s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 430s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 430s Setting up pkgconf:amd64 (1.8.1-2) ... 430s Setting up libthai0:amd64 (0.1.29-2) ... 430s Setting up liblapack-dev:amd64 (3.12.0-3) ... 430s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 430s Setting up pkg-config:amd64 (1.8.1-2) ... 430s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 430s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 430s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 430s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 430s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 430s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 430s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 430s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 430s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 430s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 430s Setting up fontconfig (2.15.0-1ubuntu1) ... 432s Regenerating fonts cache... done. 432s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 432s Setting up libxft2:amd64 (2.3.6-1) ... 432s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 432s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 432s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 432s Setting up cpp-13 (13.2.0-17ubuntu2) ... 432s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 432s Setting up libtk8.6:amd64 (8.6.13-2) ... 432s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 432s Setting up libreadline-dev:amd64 (8.2-3) ... 432s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 432s Setting up libcairo2:amd64 (1.18.0-1) ... 432s Setting up gcc-13 (13.2.0-17ubuntu2) ... 432s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 432s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 432s Setting up cpp (4:13.2.0-7ubuntu1) ... 432s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 432s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 432s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 432s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 432s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 432s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 432s Setting up libpng-dev:amd64 (1.6.43-1) ... 432s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 432s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 432s Setting up gcc (4:13.2.0-7ubuntu1) ... 432s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 432s Setting up r-base-core (4.3.2-1build1) ... 432s 432s Creating config file /etc/R/Renviron with new version 432s Setting up r-cran-crayon (1.5.2-1) ... 432s Setting up r-cran-futile.options (1.0.1-3build1) ... 432s Setting up r-cran-lattice (0.22-5-1) ... 432s Setting up r-cran-ps (1.7.6-1) ... 432s Setting up r-cran-nlme (3.1.164-1) ... 432s Setting up r-cran-formatr (1.14-1) ... 432s Setting up r-cran-xml (3.99-0.16.1-1) ... 432s Setting up r-cran-locfit (1.5-9.8-1) ... 432s Setting up r-cran-statmod (1.5.0-1) ... 432s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 432s Setting up r-cran-commonmark (1.9.1-1) ... 432s Setting up r-cran-r6 (2.5.1-1) ... 432s Setting up r-cran-pkgkitten (0.2.3-1) ... 432s Setting up r-cran-magrittr (2.0.3-1) ... 432s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 432s Setting up r-cran-littler (0.3.19-1) ... 432s Setting up r-cran-bh (1.84.0-1) ... 432s Setting up r-cran-fs (1.6.3+dfsg-1) ... 432s Setting up r-cran-rcpp (1.0.12-1) ... 432s Setting up r-cran-curl (5.2.0+dfsg-1) ... 432s Setting up r-cran-codetools (0.2-19-1) ... 432s Setting up g++-13 (13.2.0-17ubuntu2) ... 432s Setting up r-cran-brio (1.1.4-1) ... 432s Setting up r-cran-diffobj (0.3.5-1) ... 432s Setting up r-bioc-biocgenerics (0.48.1-2) ... 432s Setting up r-cran-rlang (1.1.3-1) ... 432s Setting up r-cran-matrixstats (1.2.0-1) ... 432s Setting up littler (0.3.19-1) ... 432s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 432s Setting up r-cran-xfun (0.41+dfsg-1) ... 432s Setting up r-cran-sys (3.4.2-1) ... 432s Setting up r-cran-plogr (0.2.0-3build1) ... 432s Setting up r-cran-withr (2.5.0-1) ... 432s Setting up r-cran-processx (3.8.3-1) ... 432s Setting up r-cran-mime (0.12-1) ... 432s Setting up r-cran-praise (1.0.0-4build1) ... 432s Setting up r-cran-abind (1.4-5-2) ... 432s Setting up r-cran-digest (0.6.34-1) ... 432s Setting up r-cran-yaml (2.3.8-1) ... 432s Setting up r-cran-lambda.r (1.2.4-2build1) ... 432s Setting up r-cran-evaluate (0.23-1) ... 432s Setting up r-cran-dbi (1.2.2-1) ... 432s Setting up r-cran-highr (0.10+dfsg-1) ... 432s Setting up r-cran-fansi (1.0.5-1) ... 432s Setting up r-cran-snow (1:0.4.4-2) ... 432s Setting up r-cran-glue (1.7.0-1) ... 432s Setting up r-cran-bit (4.0.5-1) ... 432s Setting up r-cran-xtable (1:1.8-4-2) ... 432s Setting up r-cran-cli (3.6.2-1) ... 432s Setting up gfortran (4:13.2.0-7ubuntu1) ... 432s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 432s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 432s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 432s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 432s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 432s Setting up r-cran-bitops (1.0-7-1) ... 432s Setting up r-cran-rprojroot (2.0.4-1) ... 432s Setting up r-cran-bit64 (4.0.5-1) ... 432s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 432s Setting up r-cran-askpass (1.2.0-1) ... 432s Setting up r-cran-fastmap (1.1.1-1) ... 432s Setting up r-cran-png (0.1-8-1) ... 432s Setting up r-bioc-biobase (2.62.0-1) ... 432s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 432s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 432s Setting up r-cran-utf8 (1.2.4-1) ... 432s Setting up r-cran-markdown (1.12+dfsg-1) ... 432s Setting up r-cran-cpp11 (0.4.7-1) ... 432s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 432s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 432s Setting up r-cran-futile.logger (1.4.3-4build1) ... 432s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 432s Setting up r-cran-matrix (1.6-5-1) ... 432s Setting up r-cran-knitr (1.45+dfsg-1) ... 432s Setting up r-cran-mgcv (1.9-1-1) ... 432s Setting up g++ (4:13.2.0-7ubuntu1) ... 432s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 432s Setting up r-cran-cachem (1.0.8-1) ... 432s Setting up build-essential (12.10ubuntu1) ... 432s Setting up r-bioc-iranges (2.36.0-1) ... 432s Setting up r-cran-rjson (0.2.21-1) ... 432s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 432s Setting up r-cran-restfulr (0.0.15-1) ... 432s Setting up r-cran-vctrs (0.6.5-1) ... 432s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 432s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 432s Setting up r-base-dev (4.3.2-1build1) ... 432s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 432s Setting up r-bioc-biocparallel (1.36.0-1) ... 432s Setting up r-cran-callr (3.7.3-2) ... 432s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 432s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 432s Setting up r-cran-desc (1.4.3-1) ... 432s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 432s Setting up r-cran-survival (3.5-8-1) ... 432s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 432s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 432s Setting up r-cran-httr (1.4.7+dfsg-1) ... 432s Setting up r-cran-memoise (2.0.1-1) ... 432s Setting up r-cran-blob (1.2.4-1) ... 432s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 432s Setting up r-bioc-xvector (0.42.0-1) ... 432s Setting up r-cran-pkgbuild (1.4.3-1) ... 432s Setting up r-cran-rsqlite (2.3.4-1) ... 432s Setting up r-cran-pkgload (1.3.4-1) ... 432s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 432s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 432s Setting up r-cran-rematch2 (2.1.2-2build1) ... 432s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 432s Setting up r-cran-waldo (0.5.2-1build1) ... 432s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 432s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 432s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 432s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 432s Setting up r-bioc-annotationdbi (1.64.1-1) ... 432s Setting up r-cran-testthat (3.2.1-1) ... 432s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 432s Setting up r-bioc-genefilter (1.84.0-1) ... 432s Setting up r-bioc-genomicalignments (1.38.2-1) ... 432s Setting up r-bioc-rtracklayer (1.62.0-1) ... 432s Setting up r-bioc-sva (3.50.0-1) ... 432s Setting up r-bioc-ballgown (2.34.0+dfsg-1) ... 432s Processing triggers for libc-bin (2.39-0ubuntu2) ... 432s Processing triggers for man-db (2.12.0-3) ... 433s Processing triggers for install-info (7.1-3) ... 440s Reading package lists... 440s Building dependency tree... 440s Reading state information... 440s Starting pkgProblemResolver with broken count: 0 440s Starting 2 pkgProblemResolver with broken count: 0 440s Done 441s The following NEW packages will be installed: 441s autopkgtest-satdep 441s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 441s Need to get 0 B/696 B of archives. 441s After this operation, 0 B of additional disk space will be used. 441s Get:1 /tmp/autopkgtest.0NNWJe/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 441s Selecting previously unselected package autopkgtest-satdep. 441s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108286 files and directories currently installed.) 441s Preparing to unpack .../2-autopkgtest-satdep.deb ... 441s Unpacking autopkgtest-satdep (0) ... 441s Setting up autopkgtest-satdep (0) ... 443s (Reading database ... 108286 files and directories currently installed.) 443s Removing autopkgtest-satdep (0) ... 443s autopkgtest [01:13:42]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 443s autopkgtest [01:13:42]: test pkg-r-autopkgtest: [----------------------- 443s Test: Try to load the R library ballgown 443s 443s R version 4.3.2 (2023-10-31) -- "Eye Holes" 443s Copyright (C) 2023 The R Foundation for Statistical Computing 443s Platform: x86_64-pc-linux-gnu (64-bit) 443s 443s R is free software and comes with ABSOLUTELY NO WARRANTY. 443s You are welcome to redistribute it under certain conditions. 443s Type 'license()' or 'licence()' for distribution details. 443s 443s R is a collaborative project with many contributors. 443s Type 'contributors()' for more information and 443s 'citation()' on how to cite R or R packages in publications. 443s 443s Type 'demo()' for some demos, 'help()' for on-line help, or 443s 'help.start()' for an HTML browser interface to help. 443s Type 'q()' to quit R. 443s 443s > library('ballgown') 453s 453s Attaching package: ‘ballgown’ 453s 453s The following object is masked from ‘package:base’: 453s 453s structure 453s 453s > 453s > 453s Other tests are currently unsupported! 453s They will be progressively added. 453s autopkgtest [01:13:52]: test pkg-r-autopkgtest: -----------------------] 453s autopkgtest [01:13:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 453s pkg-r-autopkgtest PASS 453s autopkgtest [01:13:52]: @@@@@@@@@@@@@@@@@@@@ summary 453s pkg-r-autopkgtest PASS 464s Creating nova instance adt-noble-i386-r-bioc-ballgown-20240322-010619-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...