0s autopkgtest [01:01:05]: starting date and time: 2024-03-22 01:01:05+0000
  0s autopkgtest [01:01:05]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [01:01:05]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g_4n_9cz/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-arrayexpress --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-36.secgroup --name adt-noble-i386-r-bioc-arrayexpress-20240322-010104-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
394s autopkgtest [01:07:39]: testbed dpkg architecture: amd64
394s autopkgtest [01:07:39]: testbed apt version: 2.7.12
395s autopkgtest [01:07:40]: test architecture: i386
395s autopkgtest [01:07:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup
395s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
395s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
395s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
395s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB]
395s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
395s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
395s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
395s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
395s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
395s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
395s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
395s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
395s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB]
395s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
395s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
395s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
395s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
398s Fetched 11.3 MB in 1s (7737 kB/s)
399s Reading package lists...
400s Reading package lists...
400s Building dependency tree...
400s Reading state information...
401s Calculating upgrade...
401s The following packages will be upgraded:
401s   cloud-init fonts-ubuntu-console python3-markupsafe
401s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
401s Need to get 629 kB of archives.
401s After this operation, 11.3 kB disk space will be freed.
401s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
401s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
401s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
401s Preconfiguring packages ...
401s Fetched 629 kB in 0s (21.6 MB/s)
401s (Reading database ... 
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(Reading database ... 15%
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
401s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
401s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
401s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
401s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
401s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
402s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
402s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
402s Setting up cloud-init (24.1.2-0ubuntu1) ...
403s Setting up python3-markupsafe (2.1.5-1build1) ...
403s Processing triggers for man-db (2.12.0-3) ...
404s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
404s Reading package lists...
405s Building dependency tree...
405s Reading state information...
405s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
405s sh: Attempting to set up Debian/Ubuntu apt sources automatically
405s sh: Distribution appears to be Ubuntu
406s Reading package lists...
406s Building dependency tree...
406s Reading state information...
407s eatmydata is already the newest version (131-1).
407s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
407s Reading package lists...
407s Building dependency tree...
407s Reading state information...
407s dbus is already the newest version (1.14.10-4ubuntu1).
407s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
407s Reading package lists...
407s Building dependency tree...
407s Reading state information...
408s rng-tools-debian is already the newest version (2.4).
408s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
408s Reading package lists...
408s Building dependency tree...
408s Reading state information...
408s The following packages will be REMOVED:
408s   cloud-init* python3-configobj* python3-debconf*
409s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
409s After this operation, 3256 kB disk space will be freed.
409s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
409s Removing cloud-init (24.1.2-0ubuntu1) ...
409s Removing python3-configobj (5.0.8-3) ...
409s Removing python3-debconf (1.5.86) ...
409s Processing triggers for man-db (2.12.0-3) ...
410s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
410s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
410s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
410s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
410s invoke-rc.d: policy-rc.d denied execution of try-restart.
410s Reading package lists...
411s Building dependency tree...
411s Reading state information...
411s linux-generic is already the newest version (6.8.0-11.11+1).
411s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
411s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
411s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
411s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
413s Reading package lists...
413s Reading package lists...
414s Building dependency tree...
414s Reading state information...
414s Calculating upgrade...
414s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
414s Reading package lists...
414s Building dependency tree...
414s Reading state information...
414s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
415s autopkgtest [01:08:00]: rebooting testbed after setup commands that affected boot
557s autopkgtest [01:10:22]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
558s autopkgtest [01:10:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-arrayexpress
559s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-arrayexpress 1.62.0-1 (dsc) [2212 B]
559s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-arrayexpress 1.62.0-1 (tar) [140 kB]
559s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-arrayexpress 1.62.0-1 (diff) [4924 B]
559s gpgv: Signature made Thu Nov 30 19:05:30 2023 UTC
559s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
559s gpgv:                issuer "tille@debian.org"
559s gpgv: Can't check signature: No public key
559s dpkg-source: warning: cannot verify inline signature for ./r-bioc-arrayexpress_1.62.0-1.dsc: no acceptable signature found
559s autopkgtest [01:10:24]: testing package r-bioc-arrayexpress version 1.62.0-1
559s autopkgtest [01:10:24]: build not needed
564s autopkgtest [01:10:29]: test pkg-r-autopkgtest: preparing testbed
568s Note, using file '/tmp/autopkgtest.cQs7zK/1-autopkgtest-satdep.dsc' to get the build dependencies
568s Reading package lists...
569s Building dependency tree...
569s Reading state information...
569s Starting pkgProblemResolver with broken count: 0
569s Starting 2 pkgProblemResolver with broken count: 0
569s Done
570s The following NEW packages will be installed:
570s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
570s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
570s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
570s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
570s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
570s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
570s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
570s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
570s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
570s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
570s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
570s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
570s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
570s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
570s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
570s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
570s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config
570s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
570s   r-bioc-affxparser r-bioc-affy r-bioc-affyio r-bioc-arrayexpress
570s   r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-delayedarray
570s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
570s   r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-oligo
570s   r-bioc-oligoclasses r-bioc-preprocesscore r-bioc-s4arrays r-bioc-s4vectors
570s   r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector
570s   r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-biocmanager r-cran-bit
570s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
570s   r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
570s   r-cran-fastmap r-cran-ff r-cran-foreach r-cran-glue r-cran-httr
570s   r-cran-iterators r-cran-jsonlite r-cran-lattice r-cran-lifecycle
570s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl
570s   r-cran-pkgconfig r-cran-plogr r-cran-r6 r-cran-rcurl r-cran-rlang
570s   r-cran-rsqlite r-cran-statmod r-cran-sys r-cran-vctrs rpcsvc-proto unzip
570s   x11-common xdg-utils zip zlib1g-dev
570s 0 upgraded, 166 newly installed, 0 to remove and 0 not upgraded.
570s Need to get 208 MB of archives.
570s After this operation, 555 MB of additional disk space will be used.
570s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
570s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
570s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
570s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
570s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
570s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
570s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
570s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
570s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
570s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
570s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
570s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
570s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
570s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
570s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
570s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
570s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
570s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
570s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
570s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
570s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
570s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
570s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
570s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
570s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
570s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
570s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
570s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
570s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
570s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
570s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
570s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
570s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
570s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
570s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
570s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
570s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
570s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
570s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
570s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
570s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
570s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
570s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
570s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
570s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
570s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
570s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
570s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
570s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
570s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
570s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
570s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
570s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
570s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
570s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
570s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
570s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
570s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
570s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
570s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
570s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
570s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
570s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
570s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
570s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
570s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
570s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
570s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
570s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
570s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
570s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
570s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
570s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
570s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
570s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
570s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
570s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
570s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
570s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
570s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
570s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
570s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
570s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
570s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
570s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
570s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
570s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
570s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
570s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
570s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
570s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
570s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
570s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
570s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
570s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
570s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
570s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
570s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
570s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
570s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
570s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
570s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
570s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
571s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
571s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
571s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
571s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
571s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affxparser amd64 1.74.0-1 [1011 kB]
571s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
571s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
571s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affyio amd64 1.72.0-1 [90.8 kB]
571s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
571s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-preprocesscore amd64 1.64.0+ds-1 [151 kB]
571s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affy amd64 1.80.0-1 [1350 kB]
571s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
571s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
571s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
571s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
571s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
571s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
571s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
571s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB]
571s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB]
571s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
571s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
571s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
571s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB]
571s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
571s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB]
571s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB]
571s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB]
571s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
571s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
571s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB]
571s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-iterators all 1.0.14-1 [336 kB]
571s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-foreach all 1.5.2-1 [124 kB]
571s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB]
571s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB]
571s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB]
571s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
571s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
571s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
571s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
571s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB]
571s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB]
571s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB]
571s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB]
571s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB]
571s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
571s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
571s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB]
571s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB]
571s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ff amd64 4.0.12+ds-1 [978 kB]
571s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-oligoclasses all 1.64.0-1 [1257 kB]
571s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-oligo amd64 1.66.0+ds-1 [923 kB]
571s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB]
571s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-limma amd64 3.58.1+dfsg-1 [1899 kB]
571s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB]
571s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB]
571s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB]
571s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB]
571s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB]
571s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB]
571s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
571s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
571s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-arrayexpress all 1.62.0-1 [190 kB]
572s Preconfiguring packages ...
572s Fetched 208 MB in 2s (117 MB/s)
572s Selecting previously unselected package libc-dev-bin.
572s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
572s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
572s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
572s Selecting previously unselected package linux-libc-dev:amd64.
572s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
572s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
572s Selecting previously unselected package libcrypt-dev:amd64.
572s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
572s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
572s Selecting previously unselected package libtirpc-dev:amd64.
572s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
572s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
572s Selecting previously unselected package libnsl-dev:amd64.
572s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
572s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
573s Selecting previously unselected package rpcsvc-proto.
573s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
573s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
573s Selecting previously unselected package libc6-dev:amd64.
573s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
573s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
573s Selecting previously unselected package libisl23:amd64.
573s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
573s Unpacking libisl23:amd64 (0.26-3) ...
573s Selecting previously unselected package libmpc3:amd64.
573s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
573s Unpacking libmpc3:amd64 (1.3.1-1) ...
573s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
573s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
573s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
573s Selecting previously unselected package cpp-13.
573s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
573s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
573s Selecting previously unselected package cpp-x86-64-linux-gnu.
573s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
573s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
573s Selecting previously unselected package cpp.
573s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
573s Unpacking cpp (4:13.2.0-7ubuntu1) ...
573s Selecting previously unselected package libcc1-0:amd64.
573s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libgomp1:amd64.
573s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libitm1:amd64.
573s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libatomic1:amd64.
573s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libasan8:amd64.
573s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package liblsan0:amd64.
573s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libtsan2:amd64.
573s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libubsan1:amd64.
573s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
573s Selecting previously unselected package libhwasan0:amd64.
573s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
573s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
574s Selecting previously unselected package libquadmath0:amd64.
574s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
574s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
574s Selecting previously unselected package libgcc-13-dev:amd64.
574s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
574s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
574s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
574s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
574s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
574s Selecting previously unselected package gcc-13.
574s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
574s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
574s Selecting previously unselected package gcc-x86-64-linux-gnu.
574s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
574s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
574s Selecting previously unselected package gcc.
574s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
574s Unpacking gcc (4:13.2.0-7ubuntu1) ...
574s Selecting previously unselected package libstdc++-13-dev:amd64.
574s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
574s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
574s Selecting previously unselected package g++-13-x86-64-linux-gnu.
574s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
574s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
575s Selecting previously unselected package g++-13.
575s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
575s Unpacking g++-13 (13.2.0-17ubuntu2) ...
575s Selecting previously unselected package g++-x86-64-linux-gnu.
575s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
575s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
575s Selecting previously unselected package g++.
575s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
575s Unpacking g++ (4:13.2.0-7ubuntu1) ...
575s Selecting previously unselected package build-essential.
575s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
575s Unpacking build-essential (12.10ubuntu1) ...
575s Selecting previously unselected package dctrl-tools.
575s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
575s Unpacking dctrl-tools (2.24-3build2) ...
575s Selecting previously unselected package fonts-dejavu-mono.
575s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
575s Unpacking fonts-dejavu-mono (2.37-8) ...
575s Selecting previously unselected package fonts-dejavu-core.
575s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
575s Unpacking fonts-dejavu-core (2.37-8) ...
575s Selecting previously unselected package fontconfig-config.
575s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
575s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
575s Selecting previously unselected package libfontconfig1:amd64.
575s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
575s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
575s Selecting previously unselected package fontconfig.
575s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
575s Unpacking fontconfig (2.15.0-1ubuntu1) ...
575s Selecting previously unselected package libgfortran5:amd64.
575s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
575s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
575s Selecting previously unselected package libgfortran-13-dev:amd64.
575s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
575s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
575s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
575s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
575s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
575s Selecting previously unselected package gfortran-13.
575s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
575s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
575s Selecting previously unselected package gfortran-x86-64-linux-gnu.
575s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
575s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
575s Selecting previously unselected package gfortran.
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576s Selecting previously unselected package libblas3:amd64.
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576s Selecting previously unselected package libpixman-1-0:amd64.
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576s Selecting previously unselected package libxcb-render0:amd64.
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576s Selecting previously unselected package libxcb-shm0:amd64.
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576s Selecting previously unselected package libxrender1:amd64.
576s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
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576s Selecting previously unselected package libcairo2:amd64.
576s Preparing to unpack .../054-libcairo2_1.18.0-1_amd64.deb ...
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576s Selecting previously unselected package libdatrie1:amd64.
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576s Selecting previously unselected package libdeflate0:amd64.
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576s Selecting previously unselected package libgraphite2-3:amd64.
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576s Selecting previously unselected package libharfbuzz0b:amd64.
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576s Selecting previously unselected package x11-common.
576s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
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576s Selecting previously unselected package libice6:amd64.
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576s Selecting previously unselected package libicu-dev:amd64.
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576s Selecting previously unselected package libjpeg-turbo8:amd64.
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576s Selecting previously unselected package libjpeg8:amd64.
576s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_amd64.deb ...
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576s Selecting previously unselected package libjpeg8-dev:amd64.
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576s Selecting previously unselected package libjpeg-dev:amd64.
576s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
576s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
576s Selecting previously unselected package liblapack3:amd64.
576s Preparing to unpack .../067-liblapack3_3.12.0-3_amd64.deb ...
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576s Selecting previously unselected package liblapack-dev:amd64.
576s Preparing to unpack .../068-liblapack-dev_3.12.0-3_amd64.deb ...
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576s Selecting previously unselected package liblerc4:amd64.
576s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
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576s Selecting previously unselected package libncurses-dev:amd64.
576s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ...
576s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
577s Selecting previously unselected package libthai-data.
577s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
577s Unpacking libthai-data (0.1.29-2) ...
577s Selecting previously unselected package libthai0:amd64.
577s Preparing to unpack .../072-libthai0_0.1.29-2_amd64.deb ...
577s Unpacking libthai0:amd64 (0.1.29-2) ...
577s Selecting previously unselected package libpango-1.0-0:amd64.
577s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_amd64.deb ...
577s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ...
577s Selecting previously unselected package libpangoft2-1.0-0:amd64.
578s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ...
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578s Selecting previously unselected package libpangocairo-1.0-0:amd64.
578s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ...
578s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
578s Selecting previously unselected package libpaper1:amd64.
578s Preparing to unpack .../076-libpaper1_1.1.29_amd64.deb ...
578s Unpacking libpaper1:amd64 (1.1.29) ...
578s Selecting previously unselected package libpaper-utils.
578s Preparing to unpack .../077-libpaper-utils_1.1.29_amd64.deb ...
578s Unpacking libpaper-utils (1.1.29) ...
578s Selecting previously unselected package libpcre2-16-0:amd64.
578s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ...
578s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
578s Selecting previously unselected package libpcre2-32-0:amd64.
578s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ...
578s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
578s Selecting previously unselected package libpcre2-posix3:amd64.
578s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ...
578s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
578s Selecting previously unselected package libpcre2-dev:amd64.
578s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_amd64.deb ...
578s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ...
578s Selecting previously unselected package libpkgconf3:amd64.
578s Preparing to unpack .../082-libpkgconf3_1.8.1-2_amd64.deb ...
578s Unpacking libpkgconf3:amd64 (1.8.1-2) ...
578s Selecting previously unselected package zlib1g-dev:amd64.
578s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ...
578s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
578s Selecting previously unselected package libpng-dev:amd64.
578s Preparing to unpack .../084-libpng-dev_1.6.43-1_amd64.deb ...
578s Unpacking libpng-dev:amd64 (1.6.43-1) ...
578s Selecting previously unselected package libreadline-dev:amd64.
578s Preparing to unpack .../085-libreadline-dev_8.2-3_amd64.deb ...
578s Unpacking libreadline-dev:amd64 (8.2-3) ...
578s Selecting previously unselected package libsharpyuv0:amd64.
578s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_amd64.deb ...
578s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ...
578s Selecting previously unselected package libsm6:amd64.
578s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_amd64.deb ...
578s Unpacking libsm6:amd64 (2:1.2.3-1build2) ...
578s Selecting previously unselected package libtcl8.6:amd64.
578s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_amd64.deb ...
578s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ...
578s Selecting previously unselected package libjbig0:amd64.
578s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_amd64.deb ...
578s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ...
578s Selecting previously unselected package libwebp7:amd64.
578s Preparing to unpack .../090-libwebp7_1.3.2-0.4_amd64.deb ...
578s Unpacking libwebp7:amd64 (1.3.2-0.4) ...
578s Selecting previously unselected package libtiff6:amd64.
578s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
578s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
578s Selecting previously unselected package libxft2:amd64.
578s Preparing to unpack .../092-libxft2_2.3.6-1_amd64.deb ...
578s Unpacking libxft2:amd64 (2.3.6-1) ...
578s Selecting previously unselected package libxss1:amd64.
578s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_amd64.deb ...
578s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
578s Selecting previously unselected package libtk8.6:amd64.
578s Preparing to unpack .../094-libtk8.6_8.6.13-2_amd64.deb ...
578s Unpacking libtk8.6:amd64 (8.6.13-2) ...
578s Selecting previously unselected package libxt6:amd64.
578s Preparing to unpack .../095-libxt6_1%3a1.2.1-1.1_amd64.deb ...
578s Unpacking libxt6:amd64 (1:1.2.1-1.1) ...
578s Selecting previously unselected package pkgconf-bin.
578s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_amd64.deb ...
578s Unpacking pkgconf-bin (1.8.1-2) ...
578s Selecting previously unselected package pkgconf:amd64.
578s Preparing to unpack .../097-pkgconf_1.8.1-2_amd64.deb ...
578s Unpacking pkgconf:amd64 (1.8.1-2) ...
578s Selecting previously unselected package pkg-config:amd64.
578s Preparing to unpack .../098-pkg-config_1.8.1-2_amd64.deb ...
578s Unpacking pkg-config:amd64 (1.8.1-2) ...
578s Selecting previously unselected package zip.
578s Preparing to unpack .../099-zip_3.0-13_amd64.deb ...
578s Unpacking zip (3.0-13) ...
578s Selecting previously unselected package unzip.
578s Preparing to unpack .../100-unzip_6.0-28ubuntu3_amd64.deb ...
578s Unpacking unzip (6.0-28ubuntu3) ...
578s Selecting previously unselected package xdg-utils.
578s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
578s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
578s Selecting previously unselected package r-base-core.
578s Preparing to unpack .../102-r-base-core_4.3.2-1build1_amd64.deb ...
578s Unpacking r-base-core (4.3.2-1build1) ...
578s Selecting previously unselected package liblzma-dev:amd64.
578s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_amd64.deb ...
578s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ...
578s Selecting previously unselected package r-base-dev.
578s Preparing to unpack .../104-r-base-dev_4.3.2-1build1_all.deb ...
578s Unpacking r-base-dev (4.3.2-1build1) ...
578s Selecting previously unselected package pkg-r-autopkgtest.
578s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
578s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
578s Selecting previously unselected package r-bioc-biocgenerics.
578s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ...
578s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
578s Selecting previously unselected package r-bioc-affxparser.
578s Preparing to unpack .../107-r-bioc-affxparser_1.74.0-1_amd64.deb ...
578s Unpacking r-bioc-affxparser (1.74.0-1) ...
578s Selecting previously unselected package r-bioc-biobase.
578s Preparing to unpack .../108-r-bioc-biobase_2.62.0-1_amd64.deb ...
578s Unpacking r-bioc-biobase (2.62.0-1) ...
578s Selecting previously unselected package r-bioc-zlibbioc.
578s Preparing to unpack .../109-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
578s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
578s Selecting previously unselected package r-bioc-affyio.
578s Preparing to unpack .../110-r-bioc-affyio_1.72.0-1_amd64.deb ...
578s Unpacking r-bioc-affyio (1.72.0-1) ...
578s Selecting previously unselected package r-cran-biocmanager.
578s Preparing to unpack .../111-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
578s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
578s Selecting previously unselected package r-bioc-preprocesscore.
578s Preparing to unpack .../112-r-bioc-preprocesscore_1.64.0+ds-1_amd64.deb ...
578s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ...
578s Selecting previously unselected package r-bioc-affy.
578s Preparing to unpack .../113-r-bioc-affy_1.80.0-1_amd64.deb ...
578s Unpacking r-bioc-affy (1.80.0-1) ...
578s Selecting previously unselected package r-bioc-s4vectors.
578s Preparing to unpack .../114-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ...
578s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
578s Selecting previously unselected package r-bioc-iranges.
578s Preparing to unpack .../115-r-bioc-iranges_2.36.0-1_amd64.deb ...
578s Unpacking r-bioc-iranges (2.36.0-1) ...
579s Selecting previously unselected package r-cran-bitops.
579s Preparing to unpack .../116-r-cran-bitops_1.0-7-1_amd64.deb ...
579s Unpacking r-cran-bitops (1.0-7-1) ...
579s Selecting previously unselected package r-cran-rcurl.
579s Preparing to unpack .../117-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ...
579s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
579s Selecting previously unselected package r-bioc-genomeinfodbdata.
579s Preparing to unpack .../118-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
579s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
579s Selecting previously unselected package r-bioc-genomeinfodb.
579s Preparing to unpack .../119-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
579s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
579s Selecting previously unselected package r-bioc-xvector.
579s Preparing to unpack .../120-r-bioc-xvector_0.42.0-1_amd64.deb ...
579s Unpacking r-bioc-xvector (0.42.0-1) ...
579s Selecting previously unselected package r-bioc-genomicranges.
579s Preparing to unpack .../121-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ...
579s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
579s Selecting previously unselected package r-cran-matrixstats.
579s Preparing to unpack .../122-r-cran-matrixstats_1.2.0-1_amd64.deb ...
579s Unpacking r-cran-matrixstats (1.2.0-1) ...
579s Selecting previously unselected package r-bioc-matrixgenerics.
579s Preparing to unpack .../123-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
579s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
579s Selecting previously unselected package r-cran-lattice.
579s Preparing to unpack .../124-r-cran-lattice_0.22-5-1_amd64.deb ...
579s Unpacking r-cran-lattice (0.22-5-1) ...
579s Selecting previously unselected package r-cran-matrix.
579s Preparing to unpack .../125-r-cran-matrix_1.6-5-1_amd64.deb ...
579s Unpacking r-cran-matrix (1.6-5-1) ...
579s Selecting previously unselected package r-cran-abind.
579s Preparing to unpack .../126-r-cran-abind_1.4-5-2_all.deb ...
579s Unpacking r-cran-abind (1.4-5-2) ...
579s Selecting previously unselected package r-cran-crayon.
579s Preparing to unpack .../127-r-cran-crayon_1.5.2-1_all.deb ...
579s Unpacking r-cran-crayon (1.5.2-1) ...
579s Selecting previously unselected package r-bioc-s4arrays.
579s Preparing to unpack .../128-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ...
579s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
579s Selecting previously unselected package r-bioc-sparsearray.
579s Preparing to unpack .../129-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ...
579s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
579s Selecting previously unselected package r-bioc-delayedarray.
579s Preparing to unpack .../130-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ...
579s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
579s Selecting previously unselected package r-bioc-summarizedexperiment.
579s Preparing to unpack .../131-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
579s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
579s Selecting previously unselected package r-bioc-biostrings.
579s Preparing to unpack .../132-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
579s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
579s Selecting previously unselected package r-cran-codetools.
579s Preparing to unpack .../133-r-cran-codetools_0.2-19-1_all.deb ...
579s Unpacking r-cran-codetools (0.2-19-1) ...
579s Selecting previously unselected package r-cran-iterators.
579s Preparing to unpack .../134-r-cran-iterators_1.0.14-1_all.deb ...
579s Unpacking r-cran-iterators (1.0.14-1) ...
579s Selecting previously unselected package r-cran-foreach.
579s Preparing to unpack .../135-r-cran-foreach_1.5.2-1_all.deb ...
579s Unpacking r-cran-foreach (1.5.2-1) ...
579s Selecting previously unselected package r-cran-bit.
579s Preparing to unpack .../136-r-cran-bit_4.0.5-1_amd64.deb ...
579s Unpacking r-cran-bit (4.0.5-1) ...
580s Selecting previously unselected package r-cran-bit64.
580s Preparing to unpack .../137-r-cran-bit64_4.0.5-1_amd64.deb ...
580s Unpacking r-cran-bit64 (4.0.5-1) ...
580s Selecting previously unselected package r-cran-rlang.
580s Preparing to unpack .../138-r-cran-rlang_1.1.3-1_amd64.deb ...
580s Unpacking r-cran-rlang (1.1.3-1) ...
580s Selecting previously unselected package r-cran-cli.
580s Preparing to unpack .../139-r-cran-cli_3.6.2-1_amd64.deb ...
580s Unpacking r-cran-cli (3.6.2-1) ...
580s Selecting previously unselected package r-cran-glue.
580s Preparing to unpack .../140-r-cran-glue_1.7.0-1_amd64.deb ...
580s Unpacking r-cran-glue (1.7.0-1) ...
580s Selecting previously unselected package r-cran-lifecycle.
580s Preparing to unpack .../141-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
580s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
580s Selecting previously unselected package r-cran-vctrs.
580s Preparing to unpack .../142-r-cran-vctrs_0.6.5-1_amd64.deb ...
580s Unpacking r-cran-vctrs (0.6.5-1) ...
580s Selecting previously unselected package r-cran-blob.
580s Preparing to unpack .../143-r-cran-blob_1.2.4-1_all.deb ...
580s Unpacking r-cran-blob (1.2.4-1) ...
580s Selecting previously unselected package r-cran-dbi.
580s Preparing to unpack .../144-r-cran-dbi_1.2.2-1_all.deb ...
580s Unpacking r-cran-dbi (1.2.2-1) ...
580s Selecting previously unselected package r-cran-fastmap.
580s Preparing to unpack .../145-r-cran-fastmap_1.1.1-1_amd64.deb ...
580s Unpacking r-cran-fastmap (1.1.1-1) ...
580s Selecting previously unselected package r-cran-cachem.
580s Preparing to unpack .../146-r-cran-cachem_1.0.8-1_amd64.deb ...
580s Unpacking r-cran-cachem (1.0.8-1) ...
580s Selecting previously unselected package r-cran-memoise.
580s Preparing to unpack .../147-r-cran-memoise_2.0.1-1_all.deb ...
580s Unpacking r-cran-memoise (2.0.1-1) ...
580s Selecting previously unselected package r-cran-pkgconfig.
580s Preparing to unpack .../148-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
580s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
580s Selecting previously unselected package r-cran-plogr.
580s Preparing to unpack .../149-r-cran-plogr_0.2.0-3build1_all.deb ...
580s Unpacking r-cran-plogr (0.2.0-3build1) ...
580s Selecting previously unselected package r-cran-cpp11.
580s Preparing to unpack .../150-r-cran-cpp11_0.4.7-1_all.deb ...
580s Unpacking r-cran-cpp11 (0.4.7-1) ...
580s Selecting previously unselected package r-cran-rsqlite.
580s Preparing to unpack .../151-r-cran-rsqlite_2.3.4-1_amd64.deb ...
580s Unpacking r-cran-rsqlite (2.3.4-1) ...
580s Selecting previously unselected package r-cran-ff.
580s Preparing to unpack .../152-r-cran-ff_4.0.12+ds-1_amd64.deb ...
580s Unpacking r-cran-ff (4.0.12+ds-1) ...
580s Selecting previously unselected package r-bioc-oligoclasses.
580s Preparing to unpack .../153-r-bioc-oligoclasses_1.64.0-1_all.deb ...
580s Unpacking r-bioc-oligoclasses (1.64.0-1) ...
580s Selecting previously unselected package r-bioc-oligo.
580s Preparing to unpack .../154-r-bioc-oligo_1.66.0+ds-1_amd64.deb ...
580s Unpacking r-bioc-oligo (1.66.0+ds-1) ...
580s Selecting previously unselected package r-cran-statmod.
580s Preparing to unpack .../155-r-cran-statmod_1.5.0-1_amd64.deb ...
580s Unpacking r-cran-statmod (1.5.0-1) ...
580s Selecting previously unselected package r-bioc-limma.
580s Preparing to unpack .../156-r-bioc-limma_3.58.1+dfsg-1_amd64.deb ...
580s Unpacking r-bioc-limma (3.58.1+dfsg-1) ...
580s Selecting previously unselected package r-cran-curl.
580s Preparing to unpack .../157-r-cran-curl_5.2.0+dfsg-1_amd64.deb ...
580s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
580s Selecting previously unselected package r-cran-jsonlite.
580s Preparing to unpack .../158-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ...
580s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
580s Selecting previously unselected package r-cran-mime.
580s Preparing to unpack .../159-r-cran-mime_0.12-1_amd64.deb ...
580s Unpacking r-cran-mime (0.12-1) ...
580s Selecting previously unselected package r-cran-sys.
580s Preparing to unpack .../160-r-cran-sys_3.4.2-1_amd64.deb ...
580s Unpacking r-cran-sys (3.4.2-1) ...
580s Selecting previously unselected package r-cran-askpass.
580s Preparing to unpack .../161-r-cran-askpass_1.2.0-1_amd64.deb ...
580s Unpacking r-cran-askpass (1.2.0-1) ...
580s Selecting previously unselected package r-cran-openssl.
581s Preparing to unpack .../162-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ...
581s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
581s Selecting previously unselected package r-cran-r6.
581s Preparing to unpack .../163-r-cran-r6_2.5.1-1_all.deb ...
581s Unpacking r-cran-r6 (2.5.1-1) ...
581s Selecting previously unselected package r-cran-httr.
581s Preparing to unpack .../164-r-cran-httr_1.4.7+dfsg-1_all.deb ...
581s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
581s Selecting previously unselected package r-bioc-arrayexpress.
581s Preparing to unpack .../165-r-bioc-arrayexpress_1.62.0-1_all.deb ...
581s Unpacking r-bioc-arrayexpress (1.62.0-1) ...
581s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
581s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
581s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
581s Setting up libpaper1:amd64 (1.1.29) ...
581s 
581s Creating config file /etc/papersize with new version
581s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
581s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
581s Setting up libdatrie1:amd64 (0.2.13-3) ...
581s Setting up libxcb-render0:amd64 (1.15-1) ...
581s Setting up unzip (6.0-28ubuntu3) ...
581s Setting up x11-common (1:7.7+23ubuntu2) ...
581s Setting up libdeflate0:amd64 (1.19-1) ...
581s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
581s Setting up libxcb-shm0:amd64 (1.15-1) ...
581s Setting up libpaper-utils (1.1.29) ...
581s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
581s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
581s Setting up zip (3.0-13) ...
581s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
581s Setting up libblas3:amd64 (3.12.0-3) ...
581s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
581s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
581s Setting up libpkgconf3:amd64 (1.8.1-2) ...
581s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
581s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
581s Setting up fonts-dejavu-mono (2.37-8) ...
581s Setting up libmpc3:amd64 (1.3.1-1) ...
581s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
581s Setting up icu-devtools (74.2-1ubuntu1) ...
581s Setting up fonts-dejavu-core (2.37-8) ...
581s Setting up pkgconf-bin (1.8.1-2) ...
581s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
581s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libwebp7:amd64 (1.3.2-0.4) ...
581s Setting up liblzma-dev:amd64 (5.4.5-0.3) ...
581s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
581s Setting up libnsl-dev:amd64 (1.3.0-3) ...
581s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
581s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
581s Setting up libthai-data (0.1.29-2) ...
581s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
581s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libisl23:amd64 (0.26-3) ...
581s Setting up libc-dev-bin (2.39-0ubuntu2) ...
581s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
581s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
581s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
581s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libblas-dev:amd64 (3.12.0-3) ...
581s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
581s Setting up dctrl-tools (2.24-3build2) ...
581s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
581s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
581s Setting up libice6:amd64 (2:1.0.10-1build2) ...
581s Setting up liblapack3:amd64 (3.12.0-3) ...
581s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
581s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
581s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
582s Setting up pkgconf:amd64 (1.8.1-2) ...
582s Setting up libthai0:amd64 (0.1.29-2) ...
582s Setting up liblapack-dev:amd64 (3.12.0-3) ...
582s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
582s Setting up pkg-config:amd64 (1.8.1-2) ...
582s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
582s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
582s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
582s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
582s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
582s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
582s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
582s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
582s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
582s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
582s Setting up fontconfig (2.15.0-1ubuntu1) ...
584s Regenerating fonts cache... done.
584s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
584s Setting up libxft2:amd64 (2.3.6-1) ...
584s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
584s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
584s Setting up cpp-13 (13.2.0-17ubuntu2) ...
584s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
584s Setting up libtk8.6:amd64 (8.6.13-2) ...
584s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
584s Setting up libreadline-dev:amd64 (8.2-3) ...
584s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
584s Setting up libcairo2:amd64 (1.18.0-1) ...
584s Setting up gcc-13 (13.2.0-17ubuntu2) ...
584s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
584s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
584s Setting up cpp (4:13.2.0-7ubuntu1) ...
584s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
584s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
584s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
584s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
584s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
584s Setting up libpng-dev:amd64 (1.6.43-1) ...
584s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
584s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
584s Setting up gcc (4:13.2.0-7ubuntu1) ...
584s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
584s Setting up r-base-core (4.3.2-1build1) ...
584s 
584s Creating config file /etc/R/Renviron with new version
584s Setting up r-cran-crayon (1.5.2-1) ...
584s Setting up r-cran-lattice (0.22-5-1) ...
584s Setting up r-cran-statmod (1.5.0-1) ...
584s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
584s Setting up r-cran-r6 (2.5.1-1) ...
584s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
584s Setting up r-cran-curl (5.2.0+dfsg-1) ...
584s Setting up r-cran-codetools (0.2-19-1) ...
584s Setting up g++-13 (13.2.0-17ubuntu2) ...
584s Setting up r-bioc-biocgenerics (0.48.1-2) ...
584s Setting up r-cran-rlang (1.1.3-1) ...
584s Setting up r-cran-matrixstats (1.2.0-1) ...
584s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
584s Setting up r-cran-sys (3.4.2-1) ...
584s Setting up r-cran-plogr (0.2.0-3build1) ...
584s Setting up r-cran-mime (0.12-1) ...
584s Setting up r-cran-iterators (1.0.14-1) ...
584s Setting up r-cran-abind (1.4-5-2) ...
584s Setting up r-cran-dbi (1.2.2-1) ...
584s Setting up r-cran-foreach (1.5.2-1) ...
584s Setting up r-cran-glue (1.7.0-1) ...
584s Setting up r-cran-bit (4.0.5-1) ...
584s Setting up r-cran-ff (4.0.12+ds-1) ...
584s Setting up r-cran-cli (3.6.2-1) ...
584s Setting up gfortran (4:13.2.0-7ubuntu1) ...
584s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
584s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
584s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
584s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
584s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
584s Setting up r-cran-bitops (1.0-7-1) ...
584s Setting up r-cran-bit64 (4.0.5-1) ...
584s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
584s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
584s Setting up r-cran-askpass (1.2.0-1) ...
584s Setting up r-cran-fastmap (1.1.1-1) ...
584s Setting up r-bioc-affxparser (1.74.0-1) ...
584s Setting up r-bioc-biobase (2.62.0-1) ...
584s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
584s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
584s Setting up r-cran-cpp11 (0.4.7-1) ...
584s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
584s Setting up r-bioc-limma (3.58.1+dfsg-1) ...
584s Setting up r-cran-matrix (1.6-5-1) ...
584s Setting up g++ (4:13.2.0-7ubuntu1) ...
584s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
584s Setting up r-cran-cachem (1.0.8-1) ...
584s Setting up build-essential (12.10ubuntu1) ...
584s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ...
584s Setting up r-bioc-iranges (2.36.0-1) ...
584s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
584s Setting up r-cran-vctrs (0.6.5-1) ...
584s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
584s Setting up r-bioc-affyio (1.72.0-1) ...
584s Setting up r-base-dev (4.3.2-1build1) ...
584s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
584s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
584s Setting up r-cran-httr (1.4.7+dfsg-1) ...
584s Setting up r-bioc-affy (1.80.0-1) ...
584s Setting up r-cran-memoise (2.0.1-1) ...
584s Setting up r-cran-blob (1.2.4-1) ...
584s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
584s Setting up r-bioc-xvector (0.42.0-1) ...
584s Setting up r-cran-rsqlite (2.3.4-1) ...
584s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
584s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
584s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
584s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
584s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
584s Setting up r-bioc-oligoclasses (1.64.0-1) ...
584s Setting up r-bioc-oligo (1.66.0+ds-1) ...
584s Setting up r-bioc-arrayexpress (1.62.0-1) ...
584s Processing triggers for libc-bin (2.39-0ubuntu2) ...
584s Processing triggers for man-db (2.12.0-3) ...
585s Processing triggers for install-info (7.1-3) ...
588s Reading package lists...
588s Building dependency tree...
588s Reading state information...
589s Starting pkgProblemResolver with broken count: 0
589s Starting 2 pkgProblemResolver with broken count: 0
589s Done
589s The following NEW packages will be installed:
589s   autopkgtest-satdep
589s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
589s Need to get 0 B/696 B of archives.
589s After this operation, 0 B of additional disk space will be used.
589s Get:1 /tmp/autopkgtest.cQs7zK/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
589s Selecting previously unselected package autopkgtest-satdep.
589s (Reading database ... 
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589s Preparing to unpack .../2-autopkgtest-satdep.deb ...
589s Unpacking autopkgtest-satdep (0) ...
589s Setting up autopkgtest-satdep (0) ...
591s (Reading database ... 81309 files and directories currently installed.)
591s Removing autopkgtest-satdep (0) ...
591s autopkgtest [01:10:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
591s autopkgtest [01:10:56]: test pkg-r-autopkgtest: [-----------------------
591s Test: Try to load the R library ArrayExpress
591s 
591s R version 4.3.2 (2023-10-31) -- "Eye Holes"
591s Copyright (C) 2023 The R Foundation for Statistical Computing
591s Platform: x86_64-pc-linux-gnu (64-bit)
591s 
591s R is free software and comes with ABSOLUTELY NO WARRANTY.
591s You are welcome to redistribute it under certain conditions.
591s Type 'license()' or 'licence()' for distribution details.
591s 
591s R is a collaborative project with many contributors.
591s Type 'contributors()' for more information and
591s 'citation()' on how to cite R or R packages in publications.
591s 
591s Type 'demo()' for some demos, 'help()' for on-line help, or
591s 'help.start()' for an HTML browser interface to help.
591s Type 'q()' to quit R.
591s 
591s > library('ArrayExpress')
591s Loading required package: Biobase
591s Loading required package: BiocGenerics
591s 
591s Attaching package: ‘BiocGenerics’
591s 
591s The following objects are masked from ‘package:stats’:
591s 
591s     IQR, mad, sd, var, xtabs
591s 
591s The following objects are masked from ‘package:base’:
591s 
591s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
591s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
591s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
591s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
591s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
591s     table, tapply, union, unique, unsplit, which.max, which.min
591s 
592s Welcome to Bioconductor
592s 
592s     Vignettes contain introductory material; view with
592s     'browseVignettes()'. To cite Bioconductor, see
592s     'citation("Biobase")', and for packages 'citation("pkgname")'.
592s 
598s > 
598s > 
598s Other tests are currently unsupported!
598s They will be progressively added.
599s autopkgtest [01:11:04]: test pkg-r-autopkgtest: -----------------------]
599s autopkgtest [01:11:04]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
599s pkg-r-autopkgtest    PASS
599s autopkgtest [01:11:04]: @@@@@@@@@@@@@@@@@@@@ summary
599s pkg-r-autopkgtest    PASS
610s Creating nova instance adt-noble-i386-r-bioc-arrayexpress-20240322-010104-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...