1s autopkgtest [03:25:25]: starting date and time: 2024-03-24 03:25:25+0000 1s autopkgtest [03:25:25]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 1s autopkgtest [03:25:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._y5zop8t/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-curl --apt-upgrade r-bioc-annotationhub --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-curl/5.2.0+dfsg-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-17.secgroup --name adt-noble-i386-r-bioc-annotationhub-20240324-032524-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1027s autopkgtest [03:42:31]: testbed dpkg architecture: amd64 1027s autopkgtest [03:42:31]: testbed apt version: 2.7.12 1027s autopkgtest [03:42:31]: test architecture: i386 1027s autopkgtest [03:42:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1029s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1029s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 1029s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1029s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 1029s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3982 kB] 1029s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [486 kB] 1029s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [725 kB] 1029s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 1029s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 1029s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 1030s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 1030s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4422 kB] 1030s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1304 kB] 1030s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 1030s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 1030s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 1030s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 1033s Fetched 11.8 MB in 1s (8110 kB/s) 1033s Reading package lists... 1035s Reading package lists... 1035s Building dependency tree... 1035s Reading state information... 1036s Calculating upgrade... 1036s The following packages will be upgraded: 1036s libc-bin libc6 locales 1036s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1036s Need to get 8176 kB of archives. 1036s After this operation, 2048 B of additional disk space will be used. 1036s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 1036s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 1036s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 1036s Preconfiguring packages ... 1036s Fetched 8176 kB in 0s (95.9 MB/s) 1037s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 1037s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 1037s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 1037s Setting up libc6:amd64 (2.39-0ubuntu6) ... 1037s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 1037s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 1037s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 1038s Setting up libc-bin (2.39-0ubuntu6) ... 1038s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 1038s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 1038s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 1038s Setting up locales (2.39-0ubuntu6) ... 1039s Generating locales (this might take a while)... 1040s en_US.UTF-8... done 1040s Generation complete. 1040s Processing triggers for man-db (2.12.0-3) ... 1041s Reading package lists... 1042s Building dependency tree... 1042s Reading state information... 1042s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1042s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1042s sh: Distribution appears to be Ubuntu 1043s Reading package lists... 1044s Building dependency tree... 1044s Reading state information... 1044s eatmydata is already the newest version (131-1). 1044s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1044s Reading package lists... 1044s Building dependency tree... 1044s Reading state information... 1044s dbus is already the newest version (1.14.10-4ubuntu1). 1044s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1044s Reading package lists... 1045s Building dependency tree... 1045s Reading state information... 1045s rng-tools-debian is already the newest version (2.4). 1045s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1045s Reading package lists... 1045s Building dependency tree... 1045s Reading state information... 1046s The following packages will be REMOVED: 1046s cloud-init* python3-configobj* python3-debconf* 1046s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1046s After this operation, 3256 kB disk space will be freed. 1046s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 1046s Removing cloud-init (24.1.2-0ubuntu1) ... 1046s Removing python3-configobj (5.0.8-3) ... 1046s Removing python3-debconf (1.5.86) ... 1047s Processing triggers for man-db (2.12.0-3) ... 1047s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 1047s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 1047s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1047s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1047s invoke-rc.d: policy-rc.d denied execution of try-restart. 1048s Reading package lists... 1048s Building dependency tree... 1048s Reading state information... 1048s linux-generic is already the newest version (6.8.0-11.11+1). 1048s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1048s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1048s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1048s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1051s Reading package lists... 1051s Reading package lists... 1051s Building dependency tree... 1051s Reading state information... 1051s Calculating upgrade... 1051s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1051s Reading package lists... 1052s Building dependency tree... 1052s Reading state information... 1052s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1052s autopkgtest [03:42:56]: rebooting testbed after setup commands that affected boot 1073s autopkgtest [03:43:17]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 1074s autopkgtest [03:43:18]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-annotationhub 1075s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (dsc) [2403 B] 1075s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (tar) [170 kB] 1075s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (diff) [5564 B] 1075s gpgv: Signature made Thu Nov 30 13:34:36 2023 UTC 1075s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 1075s gpgv: issuer "tillea@rki.de" 1075s gpgv: Can't check signature: No public key 1075s dpkg-source: warning: cannot verify inline signature for ./r-bioc-annotationhub_3.10.0+dfsg-1.dsc: no acceptable signature found 1075s autopkgtest [03:43:19]: testing package r-bioc-annotationhub version 3.10.0+dfsg-1 1076s autopkgtest [03:43:20]: build not needed 1080s autopkgtest [03:43:24]: test pkg-r-autopkgtest: preparing testbed 1083s Note, using file '/tmp/autopkgtest.dXa4T2/1-autopkgtest-satdep.dsc' to get the build dependencies 1083s Reading package lists... 1084s Building dependency tree... 1084s Reading state information... 1084s Starting pkgProblemResolver with broken count: 0 1084s Starting 2 pkgProblemResolver with broken count: 0 1084s Done 1084s The following NEW packages will be installed: 1084s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 1084s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1084s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 1084s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1084s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 1084s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 1084s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 1084s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 1084s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 1084s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 1084s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 1084s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 1084s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 1084s libjs-highlight.js libjs-jquery libjs-jquery-datatables 1084s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 1084s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 1084s libjs-popper.js libjs-prettify libjs-sifter.js 1084s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 1084s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 1084s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 1084s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 1084s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 1084s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 1084s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 1084s libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 1084s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 1084s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 1084s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 1084s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi 1084s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase 1084s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 1084s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 1084s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 1084s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 1084s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 1084s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 1084s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 1084s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 1084s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 1084s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 1084s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 1084s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 1084s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 1084s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 1084s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 1084s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 1084s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 1084s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-jquerylib 1084s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 1084s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr 1084s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 1084s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 1084s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 1084s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson 1084s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass 1084s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 1084s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 1084s r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 1084s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 1084s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 1084s xdg-utils zip zlib1g-dev 1084s 0 upgraded, 288 newly installed, 0 to remove and 0 not upgraded. 1084s Need to get 437 MB of archives. 1084s After this operation, 1364 MB of additional disk space will be used. 1084s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 1084s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1084s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1084s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1084s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 1084s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1084s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1084s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1084s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1084s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1084s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1084s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1084s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1084s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1084s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1084s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1084s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1084s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1084s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1084s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1084s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1084s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1084s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1085s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1085s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1085s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1085s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1085s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1085s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1085s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1085s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1085s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1085s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 1085s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1085s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1085s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 1085s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 1085s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 1085s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1085s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1085s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 1085s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1085s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1085s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 1085s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 1085s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 1085s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 1085s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 1085s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 1085s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 1085s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 1085s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 1085s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 1085s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1085s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 1085s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 1085s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 1085s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 1085s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 1085s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 1085s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 1085s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 1085s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 1085s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 1085s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 1085s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 1085s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 1085s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1085s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 1085s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 1085s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 1085s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 1085s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1085s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1085s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1085s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1085s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1085s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1085s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1085s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1085s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1085s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1085s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1085s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 1085s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1085s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1085s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1085s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1085s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1085s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1085s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1085s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 1085s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1085s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 1085s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 1085s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 1085s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 1085s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 1085s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 1085s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 1085s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 1085s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 1085s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 1085s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 1085s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 1085s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 1085s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 1085s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 1085s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 1085s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 1085s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 1085s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 1085s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 1085s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 1085s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 1085s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 1085s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 1085s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 1085s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 1085s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 1085s Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 1085s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 1085s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 1085s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 1085s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 1085s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 1085s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 1085s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 1085s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 1085s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 1085s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 1085s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 1085s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 1085s Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 1085s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 1085s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 1086s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 1086s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 1086s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1086s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1086s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1086s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 1086s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 1086s Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 1086s Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 1086s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 1086s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 1086s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 1086s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1086s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 1086s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 1086s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 1086s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 1086s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 1086s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 1086s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 1086s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 1086s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 1086s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 1086s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1086s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 1086s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 1086s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 1086s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 1086s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1086s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1086s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 1086s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 1086s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 1086s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 1086s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 1086s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 1086s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 1086s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 1086s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 1086s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 1086s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1086s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 1086s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 1086s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 1086s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 1086s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 1086s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 1086s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 1086s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 1086s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 1086s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 1086s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 1086s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 1086s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 1086s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 1086s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 1086s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1086s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 1086s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 1086s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 1087s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 1087s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 1087s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 1087s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 1087s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 1087s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 1087s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 1087s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 1087s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 1087s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 1087s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 1087s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 1087s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 1087s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1087s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 1087s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 1087s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 1087s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 1087s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 1087s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 1087s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1087s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1087s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 1087s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 1087s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 1087s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 1087s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1087s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 1087s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1087s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 1087s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 1087s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 1087s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1087s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 1087s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 1087s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 1087s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 1087s Get:234 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1087s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 1087s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 1087s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 1087s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 1087s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 1087s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 1087s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 1087s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 1087s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 1087s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 1087s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 1087s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 1087s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 1087s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 1087s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 1087s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 1087s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1087s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 1087s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 1087s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 1087s Get:255 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 1087s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 1087s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 1087s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 1087s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 1090s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 1090s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 1090s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 1090s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 1090s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 1090s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 1090s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 1090s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 1090s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 1090s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 1090s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 1090s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 1090s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 1090s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 1090s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 1090s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 1090s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 1090s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 1090s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 1090s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 1090s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 1090s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 1090s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 1090s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 1090s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 1090s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 1090s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 1090s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 1090s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 1091s Preconfiguring packages ... 1091s Fetched 437 MB in 6s (75.5 MB/s) 1091s Selecting previously unselected package libc-dev-bin. 1091s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 1091s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 1091s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 1091s Selecting previously unselected package linux-libc-dev:amd64. 1091s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1091s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1091s Selecting previously unselected package libcrypt-dev:amd64. 1091s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1091s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1091s Selecting previously unselected package rpcsvc-proto. 1091s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1091s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1091s Selecting previously unselected package libc6-dev:amd64. 1091s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 1091s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 1091s Selecting previously unselected package libisl23:amd64. 1091s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 1091s Unpacking libisl23:amd64 (0.26-3) ... 1091s Selecting previously unselected package libmpc3:amd64. 1091s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 1091s Unpacking libmpc3:amd64 (1.3.1-1) ... 1091s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1091s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1091s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1092s Selecting previously unselected package cpp-13. 1092s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1092s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1092s Selecting previously unselected package cpp-x86-64-linux-gnu. 1092s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1092s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1092s Selecting previously unselected package cpp. 1092s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1092s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1092s Selecting previously unselected package libcc1-0:amd64. 1092s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libgomp1:amd64. 1092s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libitm1:amd64. 1092s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libatomic1:amd64. 1092s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libasan8:amd64. 1092s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package liblsan0:amd64. 1092s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libtsan2:amd64. 1092s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libubsan1:amd64. 1092s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libhwasan0:amd64. 1092s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libquadmath0:amd64. 1092s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 1092s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1092s Selecting previously unselected package libgcc-13-dev:amd64. 1092s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1092s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1092s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 1092s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1092s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1093s Selecting previously unselected package gcc-13. 1093s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 1093s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1093s Selecting previously unselected package gcc-x86-64-linux-gnu. 1093s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1093s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1093s Selecting previously unselected package gcc. 1093s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 1093s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1093s Selecting previously unselected package libstdc++-13-dev:amd64. 1093s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1093s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1093s Selecting previously unselected package g++-13-x86-64-linux-gnu. 1093s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1093s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1093s Selecting previously unselected package g++-13. 1093s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 1093s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1093s Selecting previously unselected package g++-x86-64-linux-gnu. 1093s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1093s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1093s Selecting previously unselected package g++. 1093s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 1093s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1093s Selecting previously unselected package build-essential. 1093s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 1093s Unpacking build-essential (12.10ubuntu1) ... 1093s Selecting previously unselected package dctrl-tools. 1093s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ... 1093s Unpacking dctrl-tools (2.24-3build2) ... 1093s Selecting previously unselected package fonts-dejavu-mono. 1093s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 1093s Unpacking fonts-dejavu-mono (2.37-8) ... 1093s Selecting previously unselected package fonts-dejavu-core. 1093s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 1093s Unpacking fonts-dejavu-core (2.37-8) ... 1093s Selecting previously unselected package fontconfig-config. 1093s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 1093s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1093s Selecting previously unselected package libfontconfig1:amd64. 1093s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 1093s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 1093s Selecting previously unselected package fontconfig. 1093s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 1093s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1093s Selecting previously unselected package fonts-font-awesome. 1093s Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1093s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1094s Selecting previously unselected package fonts-glyphicons-halflings. 1094s Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1094s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1094s Selecting previously unselected package fonts-lmodern. 1094s Preparing to unpack .../040-fonts-lmodern_2.005-1_all.deb ... 1094s Unpacking fonts-lmodern (2.005-1) ... 1094s Selecting previously unselected package fonts-mathjax. 1094s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1094s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1094s Selecting previously unselected package libgfortran5:amd64. 1094s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1094s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1094s Selecting previously unselected package libgfortran-13-dev:amd64. 1094s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1094s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 1094s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 1094s Preparing to unpack .../044-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1094s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1094s Selecting previously unselected package gfortran-13. 1094s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 1094s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 1094s Selecting previously unselected package gfortran-x86-64-linux-gnu. 1094s Preparing to unpack .../046-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1094s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1094s Selecting previously unselected package gfortran. 1094s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 1094s Unpacking gfortran 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previously unselected package libblas3:amd64. 1094s Preparing to unpack .../053-libblas3_3.12.0-3_amd64.deb ... 1094s Unpacking libblas3:amd64 (3.12.0-3) ... 1094s Selecting previously unselected package libblas-dev:amd64. 1094s Preparing to unpack .../054-libblas-dev_3.12.0-3_amd64.deb ... 1094s Unpacking libblas-dev:amd64 (3.12.0-3) ... 1094s Selecting previously unselected package libboost1.83-dev:amd64. 1094s Preparing to unpack .../055-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 1094s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 1097s Selecting previously unselected package libboost-dev:amd64. 1097s Preparing to unpack .../056-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 1097s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 1097s Selecting previously unselected package libbz2-dev:amd64. 1097s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 1097s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 1097s Selecting previously unselected package libpixman-1-0:amd64. 1097s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_amd64.deb ... 1097s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 1097s Selecting previously unselected package libxcb-render0:amd64. 1097s Preparing to unpack .../059-libxcb-render0_1.15-1_amd64.deb ... 1097s Unpacking libxcb-render0:amd64 (1.15-1) ... 1097s Selecting previously unselected package libxcb-shm0:amd64. 1097s Preparing to unpack .../060-libxcb-shm0_1.15-1_amd64.deb ... 1097s Unpacking libxcb-shm0:amd64 (1.15-1) ... 1097s Selecting previously unselected package libxrender1:amd64. 1097s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 1097s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 1097s Selecting previously unselected package libcairo2:amd64. 1097s Preparing to unpack .../062-libcairo2_1.18.0-1_amd64.deb ... 1097s Unpacking libcairo2:amd64 (1.18.0-1) ... 1097s Selecting previously unselected package libdatrie1:amd64. 1097s Preparing to unpack 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to unpack .../130-libxi6_2%3a1.8.1-1_amd64.deb ... 1100s Unpacking libxi6:amd64 (2:1.8.1-1) ... 1100s Selecting previously unselected package libzzip-0-13:amd64. 1100s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... 1100s Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 1100s Selecting previously unselected package zip. 1100s Preparing to unpack .../132-zip_3.0-13_amd64.deb ... 1100s Unpacking zip (3.0-13) ... 1100s Selecting previously unselected package unzip. 1100s Preparing to unpack .../133-unzip_6.0-28ubuntu3_amd64.deb ... 1100s Unpacking unzip (6.0-28ubuntu3) ... 1100s Selecting previously unselected package xdg-utils. 1100s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 1100s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 1100s Selecting previously unselected package r-base-core. 1100s Preparing to unpack .../135-r-base-core_4.3.2-1build1_amd64.deb ... 1100s Unpacking r-base-core (4.3.2-1build1) ... 1101s Selecting previously unselected package r-cran-littler. 1101s Preparing to unpack .../136-r-cran-littler_0.3.19-1_amd64.deb ... 1101s Unpacking r-cran-littler (0.3.19-1) ... 1101s Selecting previously unselected package littler. 1101s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 1101s Unpacking littler (0.3.19-1) ... 1101s Selecting previously unselected package node-bootstrap-sass. 1101s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 1101s Unpacking node-bootstrap-sass (3.4.3-2) ... 1101s Selecting previously unselected package node-html5shiv. 1101s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1101s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1101s Selecting previously unselected package node-normalize.css. 1101s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 1101s Unpacking node-normalize.css (8.0.1-5) ... 1101s Selecting previously unselected package pandoc-data. 1101s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 1101s Unpacking pandoc-data (3.1.3-1) ... 1101s Selecting previously unselected package pandoc. 1101s Preparing to unpack .../142-pandoc_3.1.3+ds-2_amd64.deb ... 1101s Unpacking pandoc (3.1.3+ds-2) ... 1102s Selecting previously unselected package pkgconf-bin. 1102s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_amd64.deb ... 1102s Unpacking pkgconf-bin (1.8.1-2) ... 1102s Selecting previously unselected package pkgconf:amd64. 1102s Preparing to unpack .../144-pkgconf_1.8.1-2_amd64.deb ... 1102s Unpacking pkgconf:amd64 (1.8.1-2) ... 1102s Selecting previously unselected package pkg-config:amd64. 1102s Preparing to unpack .../145-pkg-config_1.8.1-2_amd64.deb ... 1102s Unpacking pkg-config:amd64 (1.8.1-2) ... 1102s Selecting previously unselected package liblzma-dev:amd64. 1102s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_amd64.deb ... 1102s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 1102s Selecting previously unselected package r-base-dev. 1102s Preparing to unpack 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1102s Unpacking r-bioc-iranges (2.36.0-1) ... 1102s Selecting previously unselected package r-cran-dbi. 1102s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 1102s Unpacking r-cran-dbi (1.2.2-1) ... 1102s Selecting previously unselected package r-cran-bit. 1102s Preparing to unpack .../154-r-cran-bit_4.0.5-1_amd64.deb ... 1102s Unpacking r-cran-bit (4.0.5-1) ... 1102s Selecting previously unselected package r-cran-bit64. 1102s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_amd64.deb ... 1102s Unpacking r-cran-bit64 (4.0.5-1) ... 1102s Selecting previously unselected package r-cran-rlang. 1102s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_amd64.deb ... 1102s Unpacking r-cran-rlang (1.1.3-1) ... 1102s Selecting previously unselected package r-cran-cli. 1102s Preparing to unpack .../157-r-cran-cli_3.6.2-1_amd64.deb ... 1102s Unpacking r-cran-cli (3.6.2-1) ... 1102s Selecting previously unselected package r-cran-glue. 1102s Preparing to unpack .../158-r-cran-glue_1.7.0-1_amd64.deb ... 1102s Unpacking r-cran-glue (1.7.0-1) ... 1102s Selecting previously unselected package r-cran-lifecycle. 1102s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1102s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1103s Selecting previously unselected package r-cran-vctrs. 1103s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_amd64.deb ... 1103s Unpacking r-cran-vctrs (0.6.5-1) ... 1103s Selecting previously unselected package r-cran-blob. 1103s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 1103s Unpacking r-cran-blob (1.2.4-1) ... 1103s Selecting previously unselected package r-cran-fastmap. 1103s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_amd64.deb ... 1103s Unpacking r-cran-fastmap (1.1.1-1) ... 1103s Selecting previously unselected package r-cran-cachem. 1103s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_amd64.deb ... 1103s Unpacking r-cran-cachem (1.0.8-1) ... 1103s Selecting previously unselected package r-cran-memoise. 1103s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 1103s Unpacking r-cran-memoise (2.0.1-1) ... 1103s Selecting previously unselected package r-cran-pkgconfig. 1103s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 1103s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 1103s Selecting previously unselected package r-cran-plogr. 1103s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 1103s Unpacking r-cran-plogr (0.2.0-3build1) ... 1103s Selecting previously unselected package r-cran-cpp11. 1103s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 1103s Unpacking r-cran-cpp11 (0.4.7-1) ... 1103s Selecting previously unselected package r-cran-rsqlite. 1103s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_amd64.deb ... 1103s Unpacking r-cran-rsqlite (2.3.4-1) ... 1103s Selecting previously unselected package r-cran-curl. 1103s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 1103s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 1103s Selecting previously unselected package r-cran-jsonlite. 1103s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 1103s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 1103s Selecting previously unselected package r-cran-mime. 1103s Preparing to unpack .../171-r-cran-mime_0.12-1_amd64.deb ... 1103s Unpacking r-cran-mime (0.12-1) ... 1103s Selecting previously unselected package r-cran-sys. 1103s Preparing to unpack .../172-r-cran-sys_3.4.2-1_amd64.deb ... 1103s Unpacking r-cran-sys (3.4.2-1) ... 1103s Selecting previously unselected package r-cran-askpass. 1103s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_amd64.deb ... 1103s Unpacking r-cran-askpass (1.2.0-1) ... 1103s Selecting previously unselected package r-cran-openssl. 1103s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 1103s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 1103s Selecting previously unselected package r-cran-r6. 1103s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 1103s Unpacking r-cran-r6 (2.5.1-1) ... 1103s Selecting previously unselected package r-cran-httr. 1103s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1103s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1103s Selecting previously unselected package r-cran-png. 1103s Preparing to unpack .../177-r-cran-png_0.1-8-1_amd64.deb ... 1103s Unpacking r-cran-png (0.1-8-1) ... 1103s Selecting previously unselected package r-bioc-zlibbioc. 1103s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 1103s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 1103s Selecting previously unselected package r-bioc-xvector. 1103s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_amd64.deb ... 1103s Unpacking r-bioc-xvector (0.42.0-1) ... 1103s Selecting previously unselected package r-cran-bitops. 1103s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_amd64.deb ... 1103s Unpacking r-cran-bitops (1.0-7-1) ... 1103s Selecting previously unselected package r-cran-rcurl. 1103s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 1103s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 1103s Selecting previously unselected package r-bioc-genomeinfodbdata. 1103s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 1103s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 1103s Selecting previously unselected package r-bioc-genomeinfodb. 1103s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 1103s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 1104s Selecting previously unselected package r-cran-crayon. 1104s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 1104s Unpacking r-cran-crayon (1.5.2-1) ... 1104s Selecting previously unselected package r-bioc-biostrings. 1104s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 1104s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 1104s Selecting previously unselected package r-bioc-keggrest. 1104s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 1104s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 1104s Selecting previously unselected package r-bioc-annotationdbi. 1104s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 1104s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 1104s Selecting previously unselected package r-bioc-genomicranges. 1104s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 1104s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 1104s Selecting previously unselected package r-cran-lazyeval. 1104s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 1104s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 1104s Selecting previously unselected package r-bioc-annotationfilter. 1104s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 1104s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 1104s Selecting previously unselected package r-cran-generics. 1104s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 1104s Unpacking r-cran-generics (0.1.3-1) ... 1104s Selecting previously unselected package r-cran-magrittr. 1104s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_amd64.deb ... 1104s Unpacking r-cran-magrittr (2.0.3-1) ... 1104s Selecting previously unselected package r-cran-fansi. 1104s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_amd64.deb ... 1104s Unpacking r-cran-fansi (1.0.5-1) ... 1104s Selecting previously unselected package r-cran-utf8. 1104s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_amd64.deb ... 1104s Unpacking r-cran-utf8 (1.2.4-1) ... 1104s Selecting previously unselected package r-cran-pillar. 1104s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 1104s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 1104s Selecting previously unselected package r-cran-tibble. 1104s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 1104s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 1104s Selecting previously unselected package r-cran-withr. 1104s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 1104s Unpacking r-cran-withr (2.5.0-1) ... 1104s Selecting previously unselected package r-cran-tidyselect. 1104s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 1104s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 1104s Selecting previously unselected package r-cran-dplyr. 1104s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_amd64.deb ... 1104s Unpacking r-cran-dplyr (1.1.4-1) ... 1104s Selecting previously unselected package r-cran-purrr. 1104s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_amd64.deb ... 1104s Unpacking r-cran-purrr (1.0.2-1) ... 1104s Selecting previously unselected package r-cran-stringi. 1104s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_amd64.deb ... 1104s Unpacking r-cran-stringi (1.8.3-1) ... 1104s Selecting previously unselected package r-cran-stringr. 1104s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 1104s Unpacking r-cran-stringr (1.5.1-1) ... 1104s Selecting previously unselected package r-cran-tidyr. 1104s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_amd64.deb ... 1104s Unpacking r-cran-tidyr (1.3.1-1) ... 1105s Selecting previously unselected package r-cran-dbplyr. 1105s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 1105s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 1105s Selecting previously unselected package r-cran-filelock. 1105s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_amd64.deb ... 1105s Unpacking r-cran-filelock (1.0.3-1) ... 1105s Selecting previously unselected package r-bioc-biocfilecache. 1105s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 1105s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 1105s Selecting previously unselected package r-cran-biocmanager. 1105s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 1105s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 1105s Selecting previously unselected package r-bioc-biocversion. 1105s Preparing to unpack .../208-r-bioc-biocversion_3.18.1-1_all.deb ... 1105s Unpacking r-bioc-biocversion (3.18.1-1) ... 1105s Selecting previously unselected package r-cran-rappdirs. 1105s Preparing to unpack .../209-r-cran-rappdirs_0.3.3-1_amd64.deb ... 1105s Unpacking r-cran-rappdirs (0.3.3-1) ... 1105s Selecting previously unselected package r-cran-yaml. 1105s Preparing to unpack .../210-r-cran-yaml_2.3.8-1_amd64.deb ... 1105s Unpacking r-cran-yaml (2.3.8-1) ... 1105s Selecting previously unselected package r-cran-pkgkitten. 1105s Preparing to unpack .../211-r-cran-pkgkitten_0.2.3-1_all.deb ... 1105s Unpacking r-cran-pkgkitten (0.2.3-1) ... 1105s Selecting previously unselected package r-cran-rcpp. 1105s Preparing to unpack .../212-r-cran-rcpp_1.0.12-1_amd64.deb ... 1105s Unpacking r-cran-rcpp (1.0.12-1) ... 1105s Selecting previously unselected package r-cran-later. 1105s Preparing to unpack .../213-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 1105s Unpacking r-cran-later (1.3.2+dfsg-1) ... 1105s Selecting previously unselected package r-cran-promises. 1105s Preparing to unpack .../214-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 1105s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 1105s Selecting previously unselected package r-cran-httpuv. 1105s Preparing to unpack .../215-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 1105s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 1105s Selecting previously unselected package r-cran-xtable. 1105s Preparing to unpack .../216-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1105s Unpacking r-cran-xtable (1:1.8-4-2) ... 1105s Selecting previously unselected package r-cran-base64enc. 1105s Preparing to unpack .../217-r-cran-base64enc_0.1-3-3_amd64.deb ... 1105s Unpacking r-cran-base64enc (0.1-3-3) ... 1105s Selecting previously unselected package r-cran-digest. 1105s Preparing to unpack .../218-r-cran-digest_0.6.34-1_amd64.deb ... 1105s Unpacking r-cran-digest (0.6.34-1) ... 1105s Selecting previously unselected package r-cran-ellipsis. 1105s Preparing to unpack .../219-r-cran-ellipsis_0.3.2-2_amd64.deb ... 1105s Unpacking r-cran-ellipsis (0.3.2-2) ... 1105s Selecting previously unselected package r-cran-htmltools. 1105s Preparing to unpack .../220-r-cran-htmltools_0.5.7-1_amd64.deb ... 1105s Unpacking r-cran-htmltools (0.5.7-1) ... 1105s Selecting previously unselected package r-cran-fontawesome. 1105s Preparing to unpack .../221-r-cran-fontawesome_0.5.2-1_all.deb ... 1105s Unpacking r-cran-fontawesome (0.5.2-1) ... 1105s Selecting previously unselected package r-cran-sourcetools. 1105s Preparing to unpack .../222-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1105s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1105s Selecting previously unselected package r-cran-commonmark. 1105s Preparing to unpack .../223-r-cran-commonmark_1.9.1-1_amd64.deb ... 1105s Unpacking r-cran-commonmark (1.9.1-1) ... 1105s Selecting previously unselected package r-cran-jquerylib. 1105s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1105s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1105s Selecting previously unselected package r-cran-fs. 1105s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 1105s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 1105s Selecting previously unselected package r-cran-sass. 1105s Preparing to unpack .../226-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 1105s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 1106s Selecting previously unselected package r-cran-bslib. 1106s Preparing to unpack .../227-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 1106s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 1106s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1106s Preparing to unpack .../228-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1106s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1106s Selecting previously unselected package r-cran-shiny. 1106s Preparing to unpack .../229-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 1106s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 1106s Selecting previously unselected package r-cran-evaluate. 1106s Preparing to unpack .../230-r-cran-evaluate_0.23-1_all.deb ... 1106s Unpacking r-cran-evaluate (0.23-1) ... 1106s Selecting previously unselected package r-cran-xfun. 1106s Preparing to unpack .../231-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 1106s Unpacking r-cran-xfun (0.41+dfsg-1) ... 1106s Selecting previously unselected package r-cran-highr. 1106s Preparing to unpack .../232-r-cran-highr_0.10+dfsg-1_all.deb ... 1106s Unpacking r-cran-highr (0.10+dfsg-1) ... 1106s Selecting previously unselected package libjs-mathjax. 1106s Preparing to unpack .../233-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1106s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1107s Selecting previously unselected package r-cran-knitr. 1107s Preparing to unpack .../234-r-cran-knitr_1.45+dfsg-1_all.deb ... 1107s Unpacking r-cran-knitr (1.45+dfsg-1) ... 1107s Selecting previously unselected package r-cran-tinytex. 1107s Preparing to unpack .../235-r-cran-tinytex_0.49-1_all.deb ... 1107s Unpacking r-cran-tinytex (0.49-1) ... 1107s Selecting previously unselected package libjs-modernizr. 1107s Preparing to unpack .../236-libjs-modernizr_2.6.2+ds1-5_all.deb ... 1107s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 1107s Selecting previously unselected package r-cran-rmarkdown. 1107s Preparing to unpack .../237-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 1107s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 1107s Selecting previously unselected package r-cran-htmlwidgets. 1107s Preparing to unpack .../238-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 1107s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1107s Selecting previously unselected package r-cran-crosstalk. 1107s Preparing to unpack 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.../244-r-cran-formatr_1.14-1_all.deb ... 1107s Unpacking r-cran-formatr (1.14-1) ... 1107s Selecting previously unselected package r-cran-lambda.r. 1107s Preparing to unpack .../245-r-cran-lambda.r_1.2.4-2build1_all.deb ... 1107s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 1107s Selecting previously unselected package r-cran-futile.options. 1107s Preparing to unpack .../246-r-cran-futile.options_1.0.1-3build1_all.deb ... 1107s Unpacking r-cran-futile.options (1.0.1-3build1) ... 1107s Selecting previously unselected package r-cran-futile.logger. 1107s Preparing to unpack .../247-r-cran-futile.logger_1.4.3-4build1_all.deb ... 1107s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 1107s Selecting previously unselected package r-cran-snow. 1107s Preparing to unpack .../248-r-cran-snow_1%3a0.4.4-2_all.deb ... 1107s Unpacking r-cran-snow (1:0.4.4-2) ... 1107s Selecting previously unselected package r-cran-codetools. 1107s Preparing to unpack .../249-r-cran-codetools_0.2-19-1_all.deb ... 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unpack .../260-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 1113s Unpacking r-cran-xml (3.99-0.16.1-1) ... 1113s Selecting previously unselected package r-cran-hms. 1113s Preparing to unpack .../261-r-cran-hms_1.1.3-1_all.deb ... 1113s Unpacking r-cran-hms (1.1.3-1) ... 1113s Selecting previously unselected package r-cran-prettyunits. 1113s Preparing to unpack .../262-r-cran-prettyunits_1.2.0-1_all.deb ... 1113s Unpacking r-cran-prettyunits (1.2.0-1) ... 1113s Selecting previously unselected package r-cran-progress. 1113s Preparing to unpack .../263-r-cran-progress_1.2.3-1_all.deb ... 1113s Unpacking r-cran-progress (1.2.3-1) ... 1113s Selecting previously unselected package r-cran-xml2. 1113s Preparing to unpack .../264-r-cran-xml2_1.3.6-1_amd64.deb ... 1113s Unpacking r-cran-xml2 (1.3.6-1) ... 1113s Selecting previously unselected package r-bioc-biomart. 1113s Preparing to unpack .../265-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 1113s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 1113s Selecting previously unselected package r-bioc-rhtslib. 1113s Preparing to unpack .../266-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 1113s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 1113s Selecting previously unselected package r-bioc-rsamtools. 1113s Preparing to unpack .../267-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 1113s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 1114s Selecting previously unselected package r-cran-matrixstats. 1114s Preparing to unpack .../268-r-cran-matrixstats_1.2.0-1_amd64.deb ... 1114s Unpacking r-cran-matrixstats (1.2.0-1) ... 1114s Selecting previously unselected package r-bioc-matrixgenerics. 1114s Preparing to unpack .../269-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 1114s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 1114s Selecting previously unselected package r-cran-lattice. 1114s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_amd64.deb ... 1114s Unpacking r-cran-lattice (0.22-5-1) ... 1114s Selecting previously unselected package 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texlive-base (2023.20240207-1) ... 1119s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 1119s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 1119s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 1119s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 1120s Setting up r-cran-magrittr (2.0.3-1) ... 1120s Setting up r-cran-rappdirs (0.3.3-1) ... 1120s Setting up r-cran-filelock (1.0.3-1) ... 1120s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 1120s Setting up r-cran-littler (0.3.19-1) ... 1120s Setting up r-cran-bh (1.84.0-1) ... 1120s Setting up r-cran-fs (1.6.3+dfsg-1) ... 1120s Setting up r-cran-rcpp (1.0.12-1) ... 1120s Setting up r-cran-curl (5.2.0+dfsg-1) ... 1120s Setting up r-cran-codetools (0.2-19-1) ... 1120s Setting up g++-13 (13.2.0-17ubuntu2) ... 1120s Setting up r-bioc-biocgenerics (0.48.1-2) ... 1120s 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(1:0.4.4-2) ... 1120s Setting up r-cran-glue (1.7.0-1) ... 1120s Setting up r-cran-bit (4.0.5-1) ... 1120s Setting up r-cran-xtable (1:1.8-4-2) ... 1120s Setting up r-cran-cli (3.6.2-1) ... 1120s Setting up gfortran (4:13.2.0-7ubuntu1) ... 1120s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1120s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1120s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1120s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1120s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 1120s Setting up r-cran-bitops (1.0-7-1) ... 1120s Setting up r-bioc-biocversion (3.18.1-1) ... 1120s Setting up r-cran-bit64 (4.0.5-1) ... 1120s Setting up 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up texlive-bibtex-extra (2023.20240207-1) ... 1120s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 1120s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1120s Setting up r-cran-hms (1.1.3-1) ... 1120s Setting up r-cran-memoise (2.0.1-1) ... 1120s Setting up r-cran-promises (1.2.1+dfsg-1) ... 1120s Setting up r-cran-purrr (1.0.2-1) ... 1120s Setting up r-cran-blob (1.2.4-1) ... 1120s Setting up r-cran-htmltools (0.5.7-1) ... 1120s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1120s Setting up r-bioc-xvector (0.42.0-1) ... 1120s Setting up r-cran-sass (0.4.8+dfsg-1) ... 1120s Setting up r-cran-dplyr (1.1.4-1) ... 1120s Setting up r-cran-rsqlite (2.3.4-1) ... 1120s Setting up r-cran-progress (1.2.3-1) ... 1120s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 1120s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 1120s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 1120s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 1120s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 1120s Setting up r-cran-fontawesome (0.5.2-1) ... 1120s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1120s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 1120s Setting up r-cran-tidyr (1.3.1-1) ... 1120s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 1120s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 1120s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 1120s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 1120s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 1120s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 1120s Setting up r-bioc-annotationdbi (1.64.1-1) ... 1120s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 1120s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 1120s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 1120s Setting up r-bioc-genomicalignments (1.38.2-1) ... 1120s Setting up r-cran-bookdown (0.37+dfsg-1) ... 1120s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 1120s Setting up r-bioc-rtracklayer (1.62.0-1) ... 1120s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 1120s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1120s Setting up r-bioc-bsgenome (1.70.2-1) ... 1120s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 1120s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 1120s Setting up r-cran-dt (0.31+dfsg-1) ... 1120s Setting up r-bioc-variantannotation (1.48.1-1) ... 1120s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 1120s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 1120s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 1120s Processing triggers for man-db (2.12.0-3) ... 1121s Processing triggers for install-info (7.1-3) ... 1121s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1121s Processing triggers for tex-common (6.18) ... 1122s Running updmap-sys. This may take some time... done. 1122s Running mktexlsr /var/lib/texmf ... done. 1122s Building format(s) --all. 1151s This may take some time... done. 1160s Reading package lists... 1161s Building dependency tree... 1161s Reading state information... 1161s Starting pkgProblemResolver with broken count: 0 1161s Starting 2 pkgProblemResolver with broken count: 0 1161s Done 1161s The following NEW packages will be installed: 1161s autopkgtest-satdep 1161s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1161s Need to get 0 B/696 B of archives. 1161s After this operation, 0 B of additional disk space will be used. 1161s Get:1 /tmp/autopkgtest.dXa4T2/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1162s Selecting previously unselected package autopkgtest-satdep. 1162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121812 files and directories currently installed.) 1162s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1162s Unpacking autopkgtest-satdep (0) ... 1162s Setting up autopkgtest-satdep (0) ... 1163s (Reading database ... 121812 files and directories currently installed.) 1163s Removing autopkgtest-satdep (0) ... 1163s autopkgtest [03:44:47]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1163s autopkgtest [03:44:47]: test pkg-r-autopkgtest: [----------------------- 1163s Test: Try to load the R library AnnotationHub 1164s 1164s R version 4.3.2 (2023-10-31) -- "Eye Holes" 1164s Copyright (C) 2023 The R Foundation for Statistical Computing 1164s Platform: x86_64-pc-linux-gnu (64-bit) 1164s 1164s R is free software and comes with ABSOLUTELY NO WARRANTY. 1164s You are welcome to redistribute it under certain conditions. 1164s Type 'license()' or 'licence()' for distribution details. 1164s 1164s R is a collaborative project with many contributors. 1164s Type 'contributors()' for more information and 1164s 'citation()' on how to cite R or R packages in publications. 1164s 1164s Type 'demo()' for some demos, 'help()' for on-line help, or 1164s 'help.start()' for an HTML browser interface to help. 1164s Type 'q()' to quit R. 1164s 1164s > library('AnnotationHub') 1164s Loading required package: BiocGenerics 1164s 1164s Attaching package: ‘BiocGenerics’ 1164s 1164s The following objects are masked from ‘package:stats’: 1164s 1164s IQR, mad, sd, var, xtabs 1164s 1164s The following objects are masked from ‘package:base’: 1164s 1164s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1164s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1164s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1164s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1164s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 1164s table, tapply, union, unique, unsplit, which.max, which.min 1164s 1164s Loading required package: BiocFileCache 1164s Loading required package: dbplyr 1167s > 1167s > 1167s Other tests are currently unsupported! 1167s They will be progressively added. 1168s autopkgtest [03:44:52]: test pkg-r-autopkgtest: -----------------------] 1168s autopkgtest [03:44:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1168s pkg-r-autopkgtest PASS 1168s autopkgtest [03:44:52]: @@@@@@@@@@@@@@@@@@@@ summary 1168s pkg-r-autopkgtest PASS 1179s Creating nova instance adt-noble-i386-r-bioc-annotationhub-20240324-032524-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...