0s autopkgtest [00:54:57]: starting date and time: 2024-03-22 00:54:57+0000 0s autopkgtest [00:54:57]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [00:54:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.017ee1h7/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-annotationhub --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-71.secgroup --name adt-noble-i386-r-bioc-annotationhub-20240322-005457-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 963s autopkgtest [01:11:00]: testbed dpkg architecture: amd64 963s autopkgtest [01:11:00]: testbed apt version: 2.7.12 964s autopkgtest [01:11:01]: test architecture: i386 964s autopkgtest [01:11:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 964s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 964s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 964s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB] 964s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 964s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 964s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 964s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 964s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 964s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 964s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 964s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 964s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB] 964s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 964s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 964s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 964s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 964s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 967s Fetched 11.3 MB in 1s (7586 kB/s) 968s Reading package lists... 969s Reading package lists... 970s Building dependency tree... 970s Reading state information... 970s Calculating upgrade... 970s The following packages will be upgraded: 970s cloud-init fonts-ubuntu-console python3-markupsafe 970s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 970s Need to get 629 kB of archives. 970s After this operation, 11.3 kB disk space will be freed. 970s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 970s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 970s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 970s Preconfiguring packages ... 970s Fetched 629 kB in 0s (16.4 MB/s) 971s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 971s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 971s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 971s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 971s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 971s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 971s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 971s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 971s Setting up cloud-init (24.1.2-0ubuntu1) ... 972s Setting up python3-markupsafe (2.1.5-1build1) ... 973s Processing triggers for man-db (2.12.0-3) ... 973s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 973s Reading package lists... 974s Building dependency tree... 974s Reading state information... 974s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 975s sh: Attempting to set up Debian/Ubuntu apt sources automatically 975s sh: Distribution appears to be Ubuntu 975s Reading package lists... 976s Building dependency tree... 976s Reading state information... 976s eatmydata is already the newest version (131-1). 976s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 976s Reading package lists... 976s Building dependency tree... 976s Reading state information... 977s dbus is already the newest version (1.14.10-4ubuntu1). 977s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 977s Reading package lists... 977s Building dependency tree... 977s Reading state information... 977s rng-tools-debian is already the newest version (2.4). 977s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 978s Reading package lists... 978s Building dependency tree... 978s Reading state information... 978s The following packages will be REMOVED: 978s cloud-init* python3-configobj* python3-debconf* 979s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 979s After this operation, 3256 kB disk space will be freed. 979s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 979s Removing cloud-init (24.1.2-0ubuntu1) ... 979s Removing python3-configobj (5.0.8-3) ... 979s Removing python3-debconf (1.5.86) ... 979s Processing triggers for man-db (2.12.0-3) ... 980s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 980s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 980s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 980s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 980s invoke-rc.d: policy-rc.d denied execution of try-restart. 980s Reading package lists... 981s Building dependency tree... 981s Reading state information... 981s linux-generic is already the newest version (6.8.0-11.11+1). 981s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 981s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 981s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 981s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 983s Reading package lists... 983s Reading package lists... 984s Building dependency tree... 984s Reading state information... 984s Calculating upgrade... 984s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 984s Reading package lists... 984s Building dependency tree... 984s Reading state information... 985s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 985s autopkgtest [01:11:22]: rebooting testbed after setup commands that affected boot 1025s autopkgtest [01:12:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 1026s autopkgtest [01:12:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-annotationhub 1027s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (dsc) [2403 B] 1027s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (tar) [170 kB] 1027s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-annotationhub 3.10.0+dfsg-1 (diff) [5564 B] 1027s gpgv: Signature made Thu Nov 30 13:34:36 2023 UTC 1027s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 1027s gpgv: issuer "tillea@rki.de" 1027s gpgv: Can't check signature: No public key 1027s dpkg-source: warning: cannot verify inline signature for ./r-bioc-annotationhub_3.10.0+dfsg-1.dsc: no acceptable signature found 1027s autopkgtest [01:12:04]: testing package r-bioc-annotationhub version 3.10.0+dfsg-1 1028s autopkgtest [01:12:05]: build not needed 1030s autopkgtest [01:12:07]: test pkg-r-autopkgtest: preparing testbed 1035s Note, using file '/tmp/autopkgtest.UdPS54/1-autopkgtest-satdep.dsc' to get the build dependencies 1035s Reading package lists... 1036s Building dependency tree... 1036s Reading state information... 1036s Starting pkgProblemResolver with broken count: 0 1036s Starting 2 pkgProblemResolver with broken count: 0 1036s Done 1037s The following NEW packages will be installed: 1037s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 1037s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1037s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 1037s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1037s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 1037s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 1037s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 1037s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 1037s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 1037s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 1037s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 1037s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 1037s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 1037s libjs-highlight.js libjs-jquery libjs-jquery-datatables 1037s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 1037s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 1037s libjs-popper.js libjs-prettify libjs-sifter.js 1037s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 1037s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 1037s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 1037s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 1037s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 1037s libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsharpyuv0 libsm6 1037s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 1037s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 1037s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 1037s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 1037s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 1037s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 1037s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 1037s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 1037s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 1037s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb 1037s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 1037s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 1037s r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest 1037s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 1037s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 1037s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 1037s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 1037s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 1037s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 1037s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 1037s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 1037s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 1037s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 1037s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 1037s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 1037s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 1037s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 1037s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 1037s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 1037s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 1037s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 1037s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 1037s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 1037s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 1037s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 1037s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 1037s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 1037s x11-common xdg-utils zip zlib1g-dev 1037s 0 upgraded, 290 newly installed, 0 to remove and 0 not upgraded. 1037s Need to get 437 MB of archives. 1037s After this operation, 1365 MB of additional disk space will be used. 1037s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 1037s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1037s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1037s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 1037s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 1037s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1037s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 1037s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1037s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1037s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1037s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1037s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1037s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1037s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1037s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1037s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1037s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1037s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1037s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1037s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1037s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1037s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1037s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1037s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1037s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1037s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1037s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1037s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1037s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1037s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1037s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1037s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1037s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1037s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1037s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 1037s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1037s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1037s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 1037s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 1037s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 1037s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1037s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1037s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 1037s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1037s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1037s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 1037s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 1037s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 1037s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 1037s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 1037s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 1037s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 1037s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 1037s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 1037s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 1037s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1037s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 1037s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2ubuntu1 [15.3 MB] 1037s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 1037s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 1037s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 1037s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 1037s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 1037s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 1037s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 1037s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 1037s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 1037s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 1037s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 1037s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1037s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 1037s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 1037s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 1037s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 1037s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1037s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 1037s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 1037s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1037s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1037s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1037s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 1037s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1037s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1037s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1037s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1037s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 1037s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1037s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1037s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1037s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1037s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1037s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 1037s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1037s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 1037s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1038s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 1038s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 1038s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3 [166 kB] 1038s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 1038s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 1038s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 1038s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 1038s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 1038s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 1038s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 1038s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 1038s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 1038s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 1038s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 1038s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 1038s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 1038s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 1038s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 1038s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 1038s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 1038s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 1038s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 1038s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 1038s Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 1038s Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 1038s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 1038s Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 1038s Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 1038s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 1038s Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 1038s Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 1038s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 1038s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 1038s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 1038s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 1038s Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 1038s Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 1038s Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 1038s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 1038s Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 1038s Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 1038s Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 1038s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 1038s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 1038s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 1038s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1038s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1038s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 1038s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 1038s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 1038s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 1038s Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 1038s Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 1038s Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 1038s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 1038s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1038s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 1038s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 1038s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 1038s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 1038s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 1038s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 1038s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 1038s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 1038s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 1038s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 1038s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1038s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 1038s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 1038s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 1038s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 1038s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1038s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1038s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 1038s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 1038s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 1038s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 1038s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 1038s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 1038s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 1038s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 1038s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 1038s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 1038s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1038s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] 1038s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 1038s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 1038s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 1038s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB] 1038s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 1038s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 1038s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 1038s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 1038s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 1038s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 1038s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 1039s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 1039s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 1039s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 1039s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 1039s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 1039s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 1039s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 1039s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 1039s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 1039s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 1039s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 1039s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 1039s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 1039s Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 1039s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 1039s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 1039s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 1039s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 1039s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 1039s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 1039s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 1039s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 1039s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 1039s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 1039s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 1039s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 1039s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1 [510 kB] 1039s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1039s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 1039s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 1039s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 1039s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 1039s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 1039s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 1039s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 1039s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1039s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 1039s Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 1039s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 1039s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1039s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 1039s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 1039s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 1039s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 1039s Get:236 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1039s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 1039s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 1039s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 1039s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 1039s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 1039s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 1039s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dt all 0.31+dfsg-1 [265 kB] 1039s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 1039s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 1039s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 1039s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 1039s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 1039s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 1039s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 1039s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 1039s Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 1039s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 1039s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 1039s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 1039s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 1039s Get:257 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 1039s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 1039s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 1039s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 1039s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 1040s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 1040s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 1040s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 1040s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 1040s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 1040s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 1040s Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 1040s Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-1 [1361 kB] 1040s Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 1040s Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 1040s Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 1040s Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 1040s Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 1040s Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 1040s Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 1040s Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 1040s Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 1040s Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 1040s Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 1040s Get:281 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 1040s Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 1040s Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 1040s Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 1040s Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 1040s Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 1040s Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 1040s Get:288 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 1040s Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-variantannotation amd64 1.48.1-1 [3527 kB] 1040s Get:290 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 1041s Preconfiguring packages ... 1041s Fetched 437 MB in 4s (121 MB/s) 1041s Selecting previously unselected package libc-dev-bin. 1041s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 1041s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 1041s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 1041s Selecting previously unselected package linux-libc-dev:amd64. 1041s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1041s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1041s Selecting previously unselected package libcrypt-dev:amd64. 1041s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1041s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1041s Selecting previously unselected package libtirpc-dev:amd64. 1041s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 1041s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1041s Selecting previously unselected package libnsl-dev:amd64. 1041s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 1041s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 1041s Selecting previously unselected package rpcsvc-proto. 1041s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1041s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1041s Selecting previously unselected package libc6-dev:amd64. 1041s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 1041s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 1042s Selecting previously unselected package libisl23:amd64. 1042s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 1042s Unpacking libisl23:amd64 (0.26-3) ... 1042s Selecting previously unselected package libmpc3:amd64. 1042s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 1042s Unpacking libmpc3:amd64 (1.3.1-1) ... 1042s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1042s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1042s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1042s Selecting previously unselected package cpp-13. 1042s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1042s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1042s Selecting previously unselected package cpp-x86-64-linux-gnu. 1042s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1042s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1042s Selecting previously unselected package cpp. 1042s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1042s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1042s Selecting previously unselected package libcc1-0:amd64. 1042s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libgomp1:amd64. 1042s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libitm1:amd64. 1042s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libatomic1:amd64. 1042s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libasan8:amd64. 1042s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package liblsan0:amd64. 1042s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libtsan2:amd64. 1042s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libubsan1:amd64. 1042s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libhwasan0:amd64. 1042s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libquadmath0:amd64. 1042s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 1042s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1042s Selecting previously unselected package libgcc-13-dev:amd64. 1042s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1042s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1042s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 1042s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1042s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1043s Selecting previously unselected package gcc-13. 1043s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 1043s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1043s Selecting previously unselected package gcc-x86-64-linux-gnu. 1043s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1043s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1043s Selecting previously unselected package gcc. 1043s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 1043s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1043s Selecting previously unselected package libstdc++-13-dev:amd64. 1043s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1043s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1043s Selecting previously unselected package g++-13-x86-64-linux-gnu. 1043s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1043s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1043s Selecting previously unselected package g++-13. 1043s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 1043s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1043s Selecting previously unselected package g++-x86-64-linux-gnu. 1043s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1043s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1043s Selecting previously unselected package g++. 1043s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 1043s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1043s Selecting previously unselected package build-essential. 1043s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 1043s Unpacking build-essential (12.10ubuntu1) ... 1043s Selecting previously unselected package dctrl-tools. 1043s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... 1043s Unpacking dctrl-tools (2.24-3build2) ... 1043s Selecting previously unselected package fonts-dejavu-mono. 1043s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 1043s Unpacking fonts-dejavu-mono (2.37-8) ... 1044s Selecting previously unselected package fonts-dejavu-core. 1044s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 1044s Unpacking fonts-dejavu-core (2.37-8) ... 1044s Selecting previously unselected package fontconfig-config. 1044s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 1044s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1044s Selecting previously unselected package libfontconfig1:amd64. 1044s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 1044s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 1044s Selecting previously unselected package fontconfig. 1044s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 1044s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1044s Selecting previously unselected package fonts-font-awesome. 1044s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1044s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1044s Selecting previously unselected package fonts-glyphicons-halflings. 1044s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1044s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1044s Selecting previously unselected package fonts-lmodern. 1044s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 1044s Unpacking fonts-lmodern (2.005-1) ... 1044s Selecting previously unselected package fonts-mathjax. 1044s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1044s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1044s Selecting previously unselected package libgfortran5:amd64. 1044s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1044s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1044s Selecting previously unselected package libgfortran-13-dev:amd64. 1044s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1044s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 1044s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 1044s Preparing to unpack .../046-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1044s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1045s Selecting previously unselected package gfortran-13. 1045s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 1045s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 1045s 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package liblatex-tounicode-perl. 1045s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 1045s Unpacking liblatex-tounicode-perl (0.54-2) ... 1045s Selecting previously unselected package libbibtex-parser-perl. 1045s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 1045s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 1045s Selecting previously unselected package libblas3:amd64. 1045s Preparing to unpack .../055-libblas3_3.12.0-3_amd64.deb ... 1045s Unpacking libblas3:amd64 (3.12.0-3) ... 1045s Selecting previously unselected package libblas-dev:amd64. 1045s Preparing to unpack .../056-libblas-dev_3.12.0-3_amd64.deb ... 1045s Unpacking libblas-dev:amd64 (3.12.0-3) ... 1045s Selecting previously unselected package libboost1.83-dev:amd64. 1045s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_amd64.deb ... 1045s Unpacking libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 1047s Selecting previously unselected package 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Selecting previously unselected package node-normalize.css. 1052s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 1052s Unpacking node-normalize.css (8.0.1-5) ... 1052s Selecting previously unselected package pandoc-data. 1052s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 1052s Unpacking pandoc-data (3.1.3-1) ... 1052s Selecting previously unselected package pandoc. 1052s Preparing to unpack .../144-pandoc_3.1.3+ds-2_amd64.deb ... 1052s Unpacking pandoc (3.1.3+ds-2) ... 1053s Selecting previously unselected package pkgconf-bin. 1053s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_amd64.deb ... 1053s Unpacking pkgconf-bin (1.8.1-2) ... 1053s Selecting previously unselected package pkgconf:amd64. 1053s Preparing to unpack .../146-pkgconf_1.8.1-2_amd64.deb ... 1053s Unpacking pkgconf:amd64 (1.8.1-2) ... 1053s Selecting previously unselected package pkg-config:amd64. 1053s Preparing to unpack .../147-pkg-config_1.8.1-2_amd64.deb ... 1053s Unpacking pkg-config:amd64 (1.8.1-2) ... 1053s Selecting previously unselected package liblzma-dev:amd64. 1053s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_amd64.deb ... 1053s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 1053s Selecting previously unselected package r-base-dev. 1053s Preparing to unpack .../149-r-base-dev_4.3.2-1build1_all.deb ... 1053s Unpacking r-base-dev (4.3.2-1build1) ... 1053s Selecting previously unselected package pkg-r-autopkgtest. 1053s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1053s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1053s Selecting previously unselected package r-bioc-biocgenerics. 1053s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 1053s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 1053s Selecting previously unselected package r-bioc-biobase. 1053s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_amd64.deb ... 1053s Unpacking r-bioc-biobase (2.62.0-1) ... 1053s Selecting previously unselected package r-bioc-s4vectors. 1053s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 1053s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 1053s Selecting previously unselected package r-bioc-iranges. 1053s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_amd64.deb ... 1053s Unpacking r-bioc-iranges (2.36.0-1) ... 1053s Selecting previously unselected package r-cran-dbi. 1053s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 1053s Unpacking r-cran-dbi (1.2.2-1) ... 1053s Selecting previously unselected package r-cran-bit. 1053s Preparing to unpack .../156-r-cran-bit_4.0.5-1_amd64.deb ... 1053s Unpacking r-cran-bit (4.0.5-1) ... 1053s Selecting previously unselected package r-cran-bit64. 1053s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_amd64.deb ... 1053s Unpacking r-cran-bit64 (4.0.5-1) ... 1053s Selecting previously unselected package r-cran-rlang. 1053s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_amd64.deb ... 1053s Unpacking r-cran-rlang (1.1.3-1) ... 1053s Selecting previously unselected package r-cran-cli. 1053s Preparing to unpack .../159-r-cran-cli_3.6.2-1_amd64.deb ... 1053s Unpacking r-cran-cli (3.6.2-1) ... 1053s Selecting previously unselected package r-cran-glue. 1053s Preparing to unpack .../160-r-cran-glue_1.7.0-1_amd64.deb ... 1053s Unpacking r-cran-glue (1.7.0-1) ... 1053s Selecting previously unselected package r-cran-lifecycle. 1053s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1053s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1054s Selecting previously unselected package r-cran-vctrs. 1054s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_amd64.deb ... 1054s Unpacking r-cran-vctrs (0.6.5-1) ... 1054s Selecting previously unselected package r-cran-blob. 1054s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 1054s Unpacking r-cran-blob (1.2.4-1) ... 1054s Selecting previously unselected package r-cran-fastmap. 1054s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_amd64.deb ... 1054s Unpacking r-cran-fastmap (1.1.1-1) ... 1054s Selecting previously unselected package r-cran-cachem. 1054s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_amd64.deb ... 1054s Unpacking r-cran-cachem (1.0.8-1) ... 1054s Selecting previously unselected package r-cran-memoise. 1054s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 1054s Unpacking r-cran-memoise (2.0.1-1) ... 1054s Selecting previously unselected package r-cran-pkgconfig. 1054s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 1054s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 1054s Selecting previously unselected package r-cran-plogr. 1054s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 1054s Unpacking r-cran-plogr (0.2.0-3build1) ... 1054s Selecting previously unselected package r-cran-cpp11. 1054s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 1054s Unpacking r-cran-cpp11 (0.4.7-1) ... 1054s Selecting previously unselected package r-cran-rsqlite. 1054s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_amd64.deb ... 1054s Unpacking r-cran-rsqlite (2.3.4-1) ... 1054s Selecting previously unselected package r-cran-curl. 1054s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 1054s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 1054s Selecting previously unselected package r-cran-jsonlite. 1054s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 1054s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 1054s Selecting previously unselected package r-cran-mime. 1054s Preparing to unpack .../173-r-cran-mime_0.12-1_amd64.deb ... 1054s Unpacking r-cran-mime (0.12-1) ... 1054s Selecting previously unselected package r-cran-sys. 1054s Preparing to unpack .../174-r-cran-sys_3.4.2-1_amd64.deb ... 1054s Unpacking r-cran-sys (3.4.2-1) ... 1054s Selecting previously unselected package r-cran-askpass. 1054s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_amd64.deb ... 1054s Unpacking r-cran-askpass (1.2.0-1) ... 1054s Selecting previously unselected package r-cran-openssl. 1054s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 1054s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 1054s Selecting previously unselected package r-cran-r6. 1054s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 1054s Unpacking r-cran-r6 (2.5.1-1) ... 1054s Selecting previously unselected package r-cran-httr. 1054s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1054s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1054s Selecting previously unselected package r-cran-png. 1054s Preparing to unpack .../179-r-cran-png_0.1-8-1_amd64.deb ... 1054s Unpacking r-cran-png (0.1-8-1) ... 1054s Selecting previously unselected package r-bioc-zlibbioc. 1054s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 1054s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 1054s Selecting previously unselected package r-bioc-xvector. 1054s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_amd64.deb ... 1054s Unpacking r-bioc-xvector (0.42.0-1) ... 1054s Selecting previously unselected package r-cran-bitops. 1054s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_amd64.deb ... 1054s Unpacking r-cran-bitops (1.0-7-1) ... 1054s Selecting previously unselected package r-cran-rcurl. 1054s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ... 1054s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 1055s Selecting previously unselected package r-bioc-genomeinfodbdata. 1055s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 1055s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 1055s Selecting previously unselected package r-bioc-genomeinfodb. 1055s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 1055s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 1055s Selecting previously unselected package r-cran-crayon. 1055s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 1055s Unpacking r-cran-crayon (1.5.2-1) ... 1055s Selecting previously unselected package r-bioc-biostrings. 1055s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 1055s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 1055s Selecting previously unselected package r-bioc-keggrest. 1055s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 1055s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 1055s Selecting previously unselected package r-bioc-annotationdbi. 1055s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 1055s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 1055s Selecting previously unselected package r-bioc-genomicranges. 1055s Preparing to unpack .../190-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 1055s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 1055s Selecting previously unselected package r-cran-lazyeval. 1055s Preparing to unpack .../191-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 1055s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 1055s Selecting previously unselected package r-bioc-annotationfilter. 1055s Preparing to unpack .../192-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 1055s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 1055s Selecting previously unselected package r-cran-generics. 1055s Preparing to unpack .../193-r-cran-generics_0.1.3-1_all.deb ... 1055s Unpacking r-cran-generics (0.1.3-1) ... 1055s Selecting previously unselected package r-cran-magrittr. 1055s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_amd64.deb ... 1055s Unpacking r-cran-magrittr (2.0.3-1) ... 1055s Selecting previously unselected package r-cran-fansi. 1055s Preparing to unpack .../195-r-cran-fansi_1.0.5-1_amd64.deb ... 1055s Unpacking r-cran-fansi (1.0.5-1) ... 1055s Selecting previously unselected package r-cran-utf8. 1055s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_amd64.deb ... 1055s Unpacking r-cran-utf8 (1.2.4-1) ... 1055s Selecting previously unselected package r-cran-pillar. 1055s Preparing to unpack .../197-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 1055s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 1055s Selecting previously unselected package r-cran-tibble. 1055s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 1055s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 1055s Selecting previously unselected package r-cran-withr. 1055s Preparing to unpack .../199-r-cran-withr_2.5.0-1_all.deb ... 1055s Unpacking r-cran-withr (2.5.0-1) ... 1056s Selecting previously unselected package r-cran-tidyselect. 1056s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 1056s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 1056s Selecting previously unselected package r-cran-dplyr. 1056s Preparing to unpack .../201-r-cran-dplyr_1.1.4-1_amd64.deb ... 1056s Unpacking r-cran-dplyr (1.1.4-1) ... 1056s Selecting previously unselected package r-cran-purrr. 1056s Preparing to unpack .../202-r-cran-purrr_1.0.2-1_amd64.deb ... 1056s Unpacking r-cran-purrr (1.0.2-1) ... 1056s Selecting previously unselected package r-cran-stringi. 1056s Preparing to unpack .../203-r-cran-stringi_1.8.3-1_amd64.deb ... 1056s Unpacking r-cran-stringi (1.8.3-1) ... 1056s Selecting previously unselected package r-cran-stringr. 1056s Preparing to unpack .../204-r-cran-stringr_1.5.1-1_all.deb ... 1056s Unpacking r-cran-stringr (1.5.1-1) ... 1056s Selecting previously unselected package r-cran-tidyr. 1056s Preparing to unpack .../205-r-cran-tidyr_1.3.1-1_amd64.deb ... 1056s Unpacking r-cran-tidyr (1.3.1-1) ... 1056s Selecting previously unselected package r-cran-dbplyr. 1056s Preparing to unpack .../206-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 1056s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 1056s Selecting previously unselected package r-cran-filelock. 1056s Preparing to unpack .../207-r-cran-filelock_1.0.3-1_amd64.deb ... 1056s Unpacking r-cran-filelock (1.0.3-1) ... 1056s Selecting previously unselected package r-bioc-biocfilecache. 1056s Preparing to unpack .../208-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 1056s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 1056s Selecting previously unselected package r-cran-biocmanager. 1056s Preparing to unpack .../209-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 1056s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 1056s Selecting previously unselected package r-bioc-biocversion. 1056s Preparing to unpack .../210-r-bioc-biocversion_3.18.1-1_all.deb ... 1056s Unpacking r-bioc-biocversion (3.18.1-1) ... 1056s Selecting previously unselected package r-cran-rappdirs. 1056s Preparing to unpack .../211-r-cran-rappdirs_0.3.3-1_amd64.deb ... 1056s Unpacking r-cran-rappdirs (0.3.3-1) ... 1056s Selecting previously unselected package r-cran-yaml. 1056s Preparing to unpack .../212-r-cran-yaml_2.3.8-1_amd64.deb ... 1056s Unpacking r-cran-yaml (2.3.8-1) ... 1056s Selecting previously unselected package r-cran-pkgkitten. 1056s Preparing to unpack .../213-r-cran-pkgkitten_0.2.3-1_all.deb ... 1056s Unpacking r-cran-pkgkitten (0.2.3-1) ... 1056s Selecting previously unselected package r-cran-rcpp. 1056s Preparing to unpack .../214-r-cran-rcpp_1.0.12-1_amd64.deb ... 1056s Unpacking r-cran-rcpp (1.0.12-1) ... 1056s Selecting previously unselected package r-cran-later. 1056s Preparing to unpack .../215-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 1056s Unpacking r-cran-later (1.3.2+dfsg-1) ... 1056s Selecting previously unselected package r-cran-promises. 1056s Preparing to unpack .../216-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 1056s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 1056s Selecting previously unselected package r-cran-httpuv. 1056s Preparing to unpack .../217-r-cran-httpuv_1.6.14+dfsg-1_amd64.deb ... 1056s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 1057s Selecting previously unselected package r-cran-xtable. 1057s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 1057s Unpacking r-cran-xtable (1:1.8-4-2) ... 1057s Selecting previously unselected package r-cran-base64enc. 1057s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_amd64.deb ... 1057s Unpacking r-cran-base64enc (0.1-3-3) ... 1057s Selecting previously unselected package r-cran-digest. 1057s Preparing to unpack .../220-r-cran-digest_0.6.34-1_amd64.deb ... 1057s Unpacking r-cran-digest (0.6.34-1) ... 1057s Selecting previously unselected package r-cran-ellipsis. 1057s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_amd64.deb ... 1057s Unpacking r-cran-ellipsis (0.3.2-2) ... 1057s Selecting previously unselected package r-cran-htmltools. 1057s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_amd64.deb ... 1057s Unpacking r-cran-htmltools (0.5.7-1) ... 1057s Selecting previously unselected package r-cran-fontawesome. 1057s Preparing to unpack .../223-r-cran-fontawesome_0.5.2-1_all.deb ... 1057s Unpacking r-cran-fontawesome (0.5.2-1) ... 1057s Selecting previously unselected package r-cran-sourcetools. 1057s Preparing to unpack .../224-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 1057s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 1057s Selecting previously unselected package r-cran-commonmark. 1057s Preparing to unpack .../225-r-cran-commonmark_1.9.1-1_amd64.deb ... 1057s Unpacking r-cran-commonmark (1.9.1-1) ... 1057s Selecting previously unselected package r-cran-jquerylib. 1057s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1057s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1057s Selecting previously unselected package r-cran-fs. 1057s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... 1057s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 1057s Selecting previously unselected package r-cran-sass. 1057s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 1057s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 1057s Selecting previously unselected package r-cran-bslib. 1057s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 1057s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 1057s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 1057s Preparing to unpack .../230-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 1057s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1057s Selecting previously unselected package r-cran-shiny. 1057s Preparing to unpack .../231-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 1057s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 1057s Selecting previously unselected package r-cran-evaluate. 1057s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 1057s Unpacking r-cran-evaluate (0.23-1) ... 1058s Selecting previously unselected package r-cran-xfun. 1058s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 1058s Unpacking r-cran-xfun (0.41+dfsg-1) ... 1058s Selecting previously unselected package r-cran-highr. 1058s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 1058s Unpacking r-cran-highr (0.10+dfsg-1) ... 1058s Selecting previously unselected package libjs-mathjax. 1058s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1058s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1058s Selecting previously unselected package r-cran-knitr. 1058s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 1058s Unpacking r-cran-knitr (1.45+dfsg-1) ... 1058s Selecting previously unselected package r-cran-tinytex. 1058s Preparing to unpack .../237-r-cran-tinytex_0.49-1_all.deb ... 1058s Unpacking r-cran-tinytex (0.49-1) ... 1058s Selecting previously unselected package libjs-modernizr. 1058s Preparing to unpack .../238-libjs-modernizr_2.6.2+ds1-5_all.deb ... 1058s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 1059s Selecting previously unselected package r-cran-rmarkdown. 1059s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 1059s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 1059s Selecting previously unselected package r-cran-htmlwidgets. 1059s Preparing to unpack .../240-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 1059s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1059s Selecting previously unselected package r-cran-crosstalk. 1059s Preparing to unpack .../241-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 1059s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 1059s Selecting previously unselected package r-cran-dt. 1059s Preparing to unpack .../242-r-cran-dt_0.31+dfsg-1_all.deb ... 1059s Unpacking r-cran-dt (0.31+dfsg-1) ... 1059s Selecting previously unselected package r-bioc-interactivedisplaybase. 1059s Preparing to unpack .../243-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 1059s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 1059s Selecting previously unselected package r-bioc-annotationhub. 1059s Preparing to unpack .../244-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 1059s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 1059s Selecting previously unselected package r-bioc-biocio. 1059s Preparing to unpack .../245-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 1059s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 1059s Selecting previously unselected package r-cran-formatr. 1059s Preparing to unpack .../246-r-cran-formatr_1.14-1_all.deb ... 1059s Unpacking r-cran-formatr (1.14-1) ... 1059s Selecting previously unselected package r-cran-lambda.r. 1059s Preparing to unpack .../247-r-cran-lambda.r_1.2.4-2build1_all.deb ... 1059s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 1059s Selecting previously unselected package r-cran-futile.options. 1059s Preparing to unpack .../248-r-cran-futile.options_1.0.1-3build1_all.deb ... 1059s Unpacking r-cran-futile.options (1.0.1-3build1) ... 1059s Selecting previously unselected package r-cran-futile.logger. 1059s Preparing to unpack .../249-r-cran-futile.logger_1.4.3-4build1_all.deb ... 1059s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 1059s Selecting previously unselected package r-cran-snow. 1059s Preparing to unpack .../250-r-cran-snow_1%3a0.4.4-2_all.deb ... 1059s Unpacking r-cran-snow (1:0.4.4-2) ... 1059s Selecting previously unselected package r-cran-codetools. 1059s Preparing to unpack .../251-r-cran-codetools_0.2-19-1_all.deb ... 1059s Unpacking r-cran-codetools (0.2-19-1) ... 1059s Selecting previously unselected package r-cran-bh. 1059s Preparing to unpack .../252-r-cran-bh_1.84.0-1_all.deb ... 1059s Unpacking r-cran-bh (1.84.0-1) ... 1059s Selecting previously unselected package r-bioc-biocparallel. 1059s Preparing to unpack .../253-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 1059s Unpacking r-bioc-biocparallel (1.36.0-1) ... 1059s Selecting previously unselected package r-cran-bookdown. 1059s Preparing to unpack .../254-r-cran-bookdown_0.37+dfsg-1_all.deb ... 1059s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 1059s Selecting previously unselected package tex-common. 1059s Preparing to unpack .../255-tex-common_6.18_all.deb ... 1059s 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(2023.20240207-1) ... 1065s Selecting previously unselected package r-bioc-biocstyle. 1065s Preparing to unpack .../261-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 1065s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 1065s Selecting previously unselected package r-cran-xml. 1065s Preparing to unpack .../262-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 1065s Unpacking r-cran-xml (3.99-0.16.1-1) ... 1065s Selecting previously unselected package r-cran-hms. 1065s Preparing to unpack .../263-r-cran-hms_1.1.3-1_all.deb ... 1065s Unpacking r-cran-hms (1.1.3-1) ... 1065s Selecting previously unselected package r-cran-prettyunits. 1065s Preparing to unpack .../264-r-cran-prettyunits_1.2.0-1_all.deb ... 1065s Unpacking r-cran-prettyunits (1.2.0-1) ... 1065s Selecting previously unselected package r-cran-progress. 1065s Preparing to unpack .../265-r-cran-progress_1.2.3-1_all.deb ... 1065s Unpacking r-cran-progress (1.2.3-1) ... 1065s Selecting previously unselected package r-cran-xml2. 1065s Preparing to unpack .../266-r-cran-xml2_1.3.6-1_amd64.deb ... 1065s Unpacking r-cran-xml2 (1.3.6-1) ... 1065s Selecting previously unselected package r-bioc-biomart. 1065s Preparing to unpack .../267-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 1065s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 1065s Selecting previously unselected package r-bioc-rhtslib. 1065s Preparing to unpack .../268-r-bioc-rhtslib_2.4.1+dfsg-1_amd64.deb ... 1065s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 1065s Selecting previously unselected package r-bioc-rsamtools. 1066s Preparing to unpack .../269-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 1066s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 1066s Selecting previously unselected package r-cran-matrixstats. 1066s Preparing to unpack .../270-r-cran-matrixstats_1.2.0-1_amd64.deb ... 1066s Unpacking r-cran-matrixstats (1.2.0-1) ... 1066s Selecting previously unselected package r-bioc-matrixgenerics. 1066s Preparing to unpack .../271-r-bioc-matrixgenerics_1.14.0-1_all.deb 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unselected package r-bioc-delayedarray. 1066s Preparing to unpack .../277-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 1066s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 1066s Selecting previously unselected package r-bioc-summarizedexperiment. 1066s Preparing to unpack .../278-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 1066s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 1066s Selecting previously unselected package r-bioc-genomicalignments. 1066s Preparing to unpack .../279-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 1066s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 1066s Selecting previously unselected package r-cran-rjson. 1066s Preparing to unpack .../280-r-cran-rjson_0.2.21-1_amd64.deb ... 1066s Unpacking r-cran-rjson (0.2.21-1) ... 1066s Selecting previously unselected package r-cran-restfulr. 1066s Preparing to unpack .../281-r-cran-restfulr_0.0.15-1_amd64.deb ... 1066s Unpacking r-cran-restfulr (0.0.15-1) ... 1066s Selecting previously 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(8c-2ubuntu11) ... 1068s Setting up libice6:amd64 (2:1.0.10-1build2) ... 1068s Setting up liblapack3:amd64 (3.12.0-3) ... 1068s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1068s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1068s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1068s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1068s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 1068s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 1068s Setting up pkgconf:amd64 (1.8.1-2) ... 1068s Setting up libthai0:amd64 (0.1.29-2) ... 1068s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1068s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 1068s Setting up pandoc (3.1.3+ds-2) ... 1068s Setting up liblapack-dev:amd64 (3.12.0-3) ... 1068s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 1068s Setting up pkg-config:amd64 (1.8.1-2) ... 1068s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1068s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 1068s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 1068s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 1068s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 1068s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 1068s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 1068s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1068s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 1068s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1068s Setting up fontconfig (2.15.0-1ubuntu1) ... 1070s Regenerating fonts cache... done. 1070s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 1070s Setting up libxft2:amd64 (2.3.6-1) ... 1070s Setting up libboost1.83-dev:amd64 (1.83.0-2ubuntu1) ... 1070s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 1070s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 1070s Setting up cpp-13 (13.2.0-17ubuntu2) ... 1070s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1070s Setting up libtk8.6:amd64 (8.6.13-2) ... 1070s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 1070s Setting up libreadline-dev:amd64 (8.2-3) ... 1070s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1070s Setting up libcairo2:amd64 (1.18.0-1) ... 1070s Setting up gcc-13 (13.2.0-17ubuntu2) ... 1070s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 1070s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 1070s Setting up cpp (4:13.2.0-7ubuntu1) ... 1070s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 1070s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 1070s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 1070s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 1070s Setting up libxmu6:amd64 (2:1.1.3-3) ... 1070s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1070s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1070s Setting up libpng-dev:amd64 (1.6.43-1) ... 1070s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 1070s Setting up libxaw7:amd64 (2:1.0.14-1) ... 1070s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1070s Setting up gcc (4:13.2.0-7ubuntu1) ... 1070s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 1070s Setting up r-base-core (4.3.2-1build1) ... 1070s 1070s Creating config file /etc/R/Renviron with new version 1070s Setting up r-cran-crayon (1.5.2-1) ... 1070s Setting up r-cran-sourcetools (0.1.7-1-1) ... 1070s Setting up r-cran-futile.options (1.0.1-3build1) ... 1070s Setting up r-cran-lattice (0.22-5-1) ... 1070s Setting up r-cran-formatr (1.14-1) ... 1070s Setting up r-cran-xml (3.99-0.16.1-1) ... 1070s Setting up texlive-binaries (2023.20230311.66589-9) ... 1070s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 1070s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 1070s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1070s Setting up r-cran-lazyeval (0.2.2-1build1) ... 1070s Setting up r-cran-commonmark (1.9.1-1) ... 1070s Setting up r-cran-r6 (2.5.1-1) ... 1070s Setting up r-cran-pkgkitten (0.2.3-1) ... 1070s Setting up texlive-base (2023.20240207-1) ... 1071s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 1071s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 1071s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 1072s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 1072s Setting up r-cran-magrittr (2.0.3-1) ... 1072s Setting up r-cran-rappdirs (0.3.3-1) ... 1072s Setting up r-cran-filelock (1.0.3-1) ... 1072s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 1072s Setting up r-cran-littler (0.3.19-1) ... 1072s Setting up r-cran-bh (1.84.0-1) ... 1072s Setting up r-cran-fs (1.6.3+dfsg-1) ... 1072s Setting up r-cran-rcpp (1.0.12-1) ... 1072s Setting up r-cran-curl (5.2.0+dfsg-1) ... 1072s Setting up r-cran-codetools (0.2-19-1) ... 1072s Setting up g++-13 (13.2.0-17ubuntu2) ... 1072s Setting up r-bioc-biocgenerics (0.48.1-2) ... 1072s Setting up r-cran-rlang (1.1.3-1) ... 1072s Setting up r-cran-matrixstats (1.2.0-1) ... 1072s Setting up littler (0.3.19-1) ... 1072s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 1072s Setting up r-cran-xfun (0.41+dfsg-1) ... 1072s Setting up r-cran-sys (3.4.2-1) ... 1072s Setting up r-cran-plogr (0.2.0-3build1) ... 1072s Setting up r-cran-withr (2.5.0-1) ... 1072s Setting up r-cran-mime (0.12-1) ... 1072s Setting up r-cran-generics (0.1.3-1) ... 1072s Setting up r-cran-base64enc (0.1-3-3) ... 1072s Setting up r-cran-abind (1.4-5-2) ... 1072s Setting up r-cran-digest (0.6.34-1) ... 1072s Setting up r-cran-yaml (2.3.8-1) ... 1072s Setting up r-cran-lambda.r (1.2.4-2build1) ... 1072s Setting up r-bioc-protgenerics (1.34.0-1) ... 1072s Setting up r-cran-evaluate (0.23-1) ... 1072s Setting up r-cran-dbi (1.2.2-1) ... 1072s Setting up r-cran-highr (0.10+dfsg-1) ... 1072s Setting up r-cran-prettyunits (1.2.0-1) ... 1072s Setting up r-cran-fansi (1.0.5-1) ... 1072s Setting up r-cran-snow (1:0.4.4-2) ... 1072s Setting up r-cran-glue (1.7.0-1) ... 1072s Setting up r-cran-bit (4.0.5-1) ... 1072s Setting up r-cran-xtable (1:1.8-4-2) ... 1072s Setting up r-cran-cli (3.6.2-1) ... 1072s Setting up gfortran (4:13.2.0-7ubuntu1) ... 1072s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1072s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1072s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1072s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1072s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 1072s Setting up r-cran-bitops (1.0-7-1) ... 1072s Setting up r-bioc-biocversion (3.18.1-1) ... 1072s Setting up r-cran-bit64 (4.0.5-1) ... 1072s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 1072s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 1072s Setting up r-cran-askpass (1.2.0-1) ... 1072s Setting up r-cran-fastmap (1.1.1-1) ... 1072s Setting up r-cran-png (0.1-8-1) ... 1072s Setting up r-bioc-biobase (2.62.0-1) ... 1072s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 1072s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 1072s Setting up r-cran-utf8 (1.2.4-1) ... 1072s Setting up r-cran-stringi (1.8.3-1) ... 1072s Setting up texlive-latex-base (2023.20240207-1) ... 1072s Setting up r-cran-cpp11 (0.4.7-1) ... 1072s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 1072s Setting up r-cran-runit (0.4.33-1) ... 1072s Setting up r-cran-futile.logger (1.4.3-4build1) ... 1072s Setting up r-cran-later (1.3.2+dfsg-1) ... 1072s Setting up r-cran-matrix (1.6-5-1) ... 1072s Setting up r-cran-tinytex (0.49-1) ... 1072s Setting up r-cran-knitr (1.45+dfsg-1) ... 1072s Setting up g++ (4:13.2.0-7ubuntu1) ... 1072s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1072s Setting up r-cran-cachem (1.0.8-1) ... 1072s Setting up build-essential (12.10ubuntu1) ... 1072s Setting up r-bioc-iranges (2.36.0-1) ... 1072s Setting up r-cran-rjson (0.2.21-1) ... 1072s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 1072s Setting up r-cran-restfulr (0.0.15-1) ... 1072s Setting up r-cran-vctrs (0.6.5-1) ... 1072s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 1072s Setting up r-cran-ellipsis (0.3.2-2) ... 1072s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 1072s Setting up r-base-dev (4.3.2-1build1) ... 1072s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 1072s Setting up r-cran-stringr (1.5.1-1) ... 1072s Setting up r-bioc-biocparallel (1.36.0-1) ... 1072s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 1072s Setting up r-cran-xml2 (1.3.6-1) ... 1072s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 1072s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 1072s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 1072s Setting up texlive-bibtex-extra (2023.20240207-1) ... 1072s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 1072s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1072s Setting up r-cran-hms (1.1.3-1) ... 1072s Setting up r-cran-memoise (2.0.1-1) ... 1072s Setting up r-cran-promises (1.2.1+dfsg-1) ... 1072s Setting up r-cran-purrr (1.0.2-1) ... 1072s Setting up r-cran-blob (1.2.4-1) ... 1072s Setting up r-cran-htmltools (0.5.7-1) ... 1072s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1072s Setting up r-bioc-xvector (0.42.0-1) ... 1072s Setting up r-cran-sass (0.4.8+dfsg-1) ... 1072s Setting up r-cran-dplyr (1.1.4-1) ... 1072s Setting up r-cran-rsqlite (2.3.4-1) ... 1072s Setting up r-cran-progress (1.2.3-1) ... 1072s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 1072s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 1072s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 1072s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 1072s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 1072s Setting up r-cran-fontawesome (0.5.2-1) ... 1072s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1072s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 1072s Setting up r-cran-tidyr (1.3.1-1) ... 1072s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 1072s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 1072s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 1072s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 1072s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 1072s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 1072s Setting up r-bioc-annotationdbi (1.64.1-1) ... 1072s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 1072s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 1072s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 1072s Setting up r-bioc-genomicalignments (1.38.2-1) ... 1072s Setting up r-cran-bookdown (0.37+dfsg-1) ... 1072s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 1072s Setting up r-bioc-rtracklayer (1.62.0-1) ... 1072s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 1072s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 1072s Setting up r-bioc-bsgenome (1.70.2-1) ... 1072s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 1072s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 1072s Setting up r-cran-dt (0.31+dfsg-1) ... 1072s Setting up r-bioc-variantannotation (1.48.1-1) ... 1072s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 1072s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 1072s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 1072s Processing triggers for man-db (2.12.0-3) ... 1074s Processing triggers for install-info (7.1-3) ... 1074s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1074s Processing triggers for tex-common (6.18) ... 1074s Running updmap-sys. This may take some time... done. 1074s Running mktexlsr /var/lib/texmf ... done. 1074s Building format(s) --all. 1107s This may take some time... done. 1111s Reading package lists... 1111s Building dependency tree... 1111s Reading state information... 1112s Starting pkgProblemResolver with broken count: 0 1112s Starting 2 pkgProblemResolver with broken count: 0 1112s Done 1112s The following NEW packages will be installed: 1112s autopkgtest-satdep 1112s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1112s Need to get 0 B/696 B of archives. 1112s After this operation, 0 B of additional disk space will be used. 1112s Get:1 /tmp/autopkgtest.UdPS54/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1112s Selecting previously unselected package autopkgtest-satdep. 1113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 121913 files and directories currently installed.) 1113s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1113s Unpacking autopkgtest-satdep (0) ... 1113s Setting up autopkgtest-satdep (0) ... 1114s (Reading database ... 121913 files and directories currently installed.) 1114s Removing autopkgtest-satdep (0) ... 1115s autopkgtest [01:13:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1115s autopkgtest [01:13:32]: test pkg-r-autopkgtest: [----------------------- 1115s Test: Try to load the R library AnnotationHub 1115s 1115s R version 4.3.2 (2023-10-31) -- "Eye Holes" 1115s Copyright (C) 2023 The R Foundation for Statistical Computing 1115s Platform: x86_64-pc-linux-gnu (64-bit) 1115s 1115s R is free software and comes with ABSOLUTELY NO WARRANTY. 1115s You are welcome to redistribute it under certain conditions. 1115s Type 'license()' or 'licence()' for distribution details. 1115s 1115s R is a collaborative project with many contributors. 1115s Type 'contributors()' for more information and 1115s 'citation()' on how to cite R or R packages in publications. 1115s 1115s Type 'demo()' for some demos, 'help()' for on-line help, or 1115s 'help.start()' for an HTML browser interface to help. 1115s Type 'q()' to quit R. 1115s 1115s > library('AnnotationHub') 1115s Loading required package: BiocGenerics 1115s 1115s Attaching package: ‘BiocGenerics’ 1115s 1115s The following objects are masked from ‘package:stats’: 1115s 1115s IQR, mad, sd, var, xtabs 1115s 1115s The following objects are masked from ‘package:base’: 1115s 1115s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 1115s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 1115s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 1115s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 1115s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 1115s table, tapply, union, unique, unsplit, which.max, which.min 1115s 1115s Loading required package: BiocFileCache 1115s Loading required package: dbplyr 1119s > 1119s > 1119s Other tests are currently unsupported! 1119s They will be progressively added. 1120s autopkgtest [01:13:37]: test pkg-r-autopkgtest: -----------------------] 1120s pkg-r-autopkgtest PASS 1120s autopkgtest [01:13:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1120s autopkgtest [01:13:37]: @@@@@@@@@@@@@@@@@@@@ summary 1120s pkg-r-autopkgtest PASS 1138s Creating nova instance adt-noble-i386-r-bioc-annotationhub-20240322-005457-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...