0s autopkgtest [00:42:23]: starting date and time: 2024-03-22 00:42:23+0000
  0s autopkgtest [00:42:23]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [00:42:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vi1k_jnl/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-altcdfenvs --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-39.secgroup --name adt-noble-i386-r-bioc-altcdfenvs-20240322-004223-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
434s autopkgtest [00:49:37]: testbed dpkg architecture: amd64
434s autopkgtest [00:49:37]: testbed apt version: 2.7.12
435s autopkgtest [00:49:38]: test architecture: i386
435s autopkgtest [00:49:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup
435s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
435s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
435s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
435s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
435s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB]
435s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
435s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
435s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
435s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
435s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
435s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
435s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB]
435s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
435s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
435s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
435s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
435s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
438s Fetched 11.3 MB in 1s (7855 kB/s)
439s Reading package lists...
440s Reading package lists...
440s Building dependency tree...
440s Reading state information...
441s Calculating upgrade...
441s The following packages will be upgraded:
441s   cloud-init fonts-ubuntu-console python3-markupsafe
441s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
441s Need to get 629 kB of archives.
441s After this operation, 11.3 kB disk space will be freed.
441s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
441s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
441s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
441s Preconfiguring packages ...
441s Fetched 629 kB in 0s (21.8 MB/s)
442s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
442s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
442s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
442s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
442s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
442s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
442s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
442s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
442s Setting up cloud-init (24.1.2-0ubuntu1) ...
443s Setting up python3-markupsafe (2.1.5-1build1) ...
444s Processing triggers for man-db (2.12.0-3) ...
444s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
444s Reading package lists...
445s Building dependency tree...
445s Reading state information...
445s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
446s sh: Attempting to set up Debian/Ubuntu apt sources automatically
446s sh: Distribution appears to be Ubuntu
447s Reading package lists...
447s Building dependency tree...
447s Reading state information...
447s eatmydata is already the newest version (131-1).
447s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
447s Reading package lists...
447s Building dependency tree...
447s Reading state information...
448s dbus is already the newest version (1.14.10-4ubuntu1).
448s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
448s Reading package lists...
448s Building dependency tree...
448s Reading state information...
448s rng-tools-debian is already the newest version (2.4).
448s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
448s Reading package lists...
449s Building dependency tree...
449s Reading state information...
449s The following packages will be REMOVED:
449s   cloud-init* python3-configobj* python3-debconf*
449s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
449s After this operation, 3256 kB disk space will be freed.
449s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
449s Removing cloud-init (24.1.2-0ubuntu1) ...
450s Removing python3-configobj (5.0.8-3) ...
450s Removing python3-debconf (1.5.86) ...
450s Processing triggers for man-db (2.12.0-3) ...
450s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
450s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
451s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
451s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
451s invoke-rc.d: policy-rc.d denied execution of try-restart.
451s Reading package lists...
451s Building dependency tree...
451s Reading state information...
451s linux-generic is already the newest version (6.8.0-11.11+1).
451s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
452s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
452s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
452s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
454s Reading package lists...
454s Reading package lists...
454s Building dependency tree...
454s Reading state information...
454s Calculating upgrade...
454s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
454s Reading package lists...
455s Building dependency tree...
455s Reading state information...
455s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
455s autopkgtest [00:49:58]: rebooting testbed after setup commands that affected boot
604s autopkgtest [00:52:27]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
606s autopkgtest [00:52:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-altcdfenvs
607s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-altcdfenvs 1:2.64.0-1 (dsc) [2223 B]
607s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-altcdfenvs 1:2.64.0-1 (tar) [328 kB]
607s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-altcdfenvs 1:2.64.0-1 (diff) [4784 B]
608s gpgv: Signature made Thu Nov 30 10:28:03 2023 UTC
608s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
608s gpgv:                issuer "tille@debian.org"
608s gpgv: Can't check signature: No public key
608s dpkg-source: warning: cannot verify inline signature for ./r-bioc-altcdfenvs_2.64.0-1.dsc: no acceptable signature found
608s autopkgtest [00:52:31]: testing package r-bioc-altcdfenvs version 1:2.64.0-1
608s autopkgtest [00:52:31]: build not needed
610s autopkgtest [00:52:33]: test pkg-r-autopkgtest: preparing testbed
613s Note, using file '/tmp/autopkgtest.x1dMiw/1-autopkgtest-satdep.dsc' to get the build dependencies
613s Reading package lists...
613s Building dependency tree...
613s Reading state information...
614s Starting pkgProblemResolver with broken count: 0
614s Starting 2 pkgProblemResolver with broken count: 0
614s Done
614s The following NEW packages will be installed:
614s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
614s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
614s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
614s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
614s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
614s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
614s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
614s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
614s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
614s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
614s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
614s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
614s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
614s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
614s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
614s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
614s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config
614s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-affy
614s   r-bioc-affyio r-bioc-altcdfenvs r-bioc-biobase r-bioc-biocgenerics
614s   r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-graph
614s   r-bioc-hypergraph r-bioc-iranges r-bioc-makecdfenv r-bioc-preprocesscore
614s   r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-biocmanager
614s   r-cran-bitops r-cran-crayon r-cran-rcolorbrewer r-cran-rcurl rpcsvc-proto
614s   unzip x11-common xdg-utils zip zlib1g-dev
614s 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded.
614s Need to get 184 MB of archives.
614s After this operation, 513 MB of additional disk space will be used.
614s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
614s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
615s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
615s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
615s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
615s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
615s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
615s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
615s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
615s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
615s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
615s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
615s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
615s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
615s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
615s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
615s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
615s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
615s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
615s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
615s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
615s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
615s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
615s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
615s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
615s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
615s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
615s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
615s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
615s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
615s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
615s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
615s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
615s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
615s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
615s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
615s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
615s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
615s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
615s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
615s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
615s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
615s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
615s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
615s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
615s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
615s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
615s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
615s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
615s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
615s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
615s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
615s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
615s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
615s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
615s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
615s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
615s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
615s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
615s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
615s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
615s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
615s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
615s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
615s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
615s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
615s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
615s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
615s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
615s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
615s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
615s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
615s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
615s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
615s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
615s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
615s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
615s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
615s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
615s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
615s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
615s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
615s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
615s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
615s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
615s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
615s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
615s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
615s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
615s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
615s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
615s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
615s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
615s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
615s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
615s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
615s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
615s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
615s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
615s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
615s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
615s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
615s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
615s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
615s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
615s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
615s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
615s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
615s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
615s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affyio amd64 1.72.0-1 [90.8 kB]
615s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
615s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-preprocesscore amd64 1.64.0+ds-1 [151 kB]
615s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-affy amd64 1.80.0-1 [1350 kB]
615s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB]
615s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-makecdfenv amd64 1.78.0-1 [3407 kB]
616s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB]
616s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB]
616s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB]
616s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1 [793 kB]
616s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
616s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
616s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB]
616s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB]
616s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-graph amd64 1.80.0-1 [1289 kB]
616s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-hypergraph all 1.74.0-1 [172 kB]
616s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-altcdfenvs all 1:2.64.0-1 [600 kB]
616s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
616s Preconfiguring packages ...
616s Fetched 184 MB in 1s (144 MB/s)
616s Selecting previously unselected package libc-dev-bin.
616s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
616s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
616s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
616s Selecting previously unselected package linux-libc-dev:amd64.
616s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
616s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
617s Selecting previously unselected package libcrypt-dev:amd64.
617s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
617s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
617s Selecting previously unselected package libtirpc-dev:amd64.
617s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
617s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
617s Selecting previously unselected package libnsl-dev:amd64.
617s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
617s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
617s Selecting previously unselected package rpcsvc-proto.
617s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
617s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
617s Selecting previously unselected package libc6-dev:amd64.
617s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
617s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
617s Selecting previously unselected package libisl23:amd64.
617s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
617s Unpacking libisl23:amd64 (0.26-3) ...
617s Selecting previously unselected package libmpc3:amd64.
617s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
617s Unpacking libmpc3:amd64 (1.3.1-1) ...
617s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
617s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
617s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
617s Selecting previously unselected package cpp-13.
617s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
617s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
617s Selecting previously unselected package cpp-x86-64-linux-gnu.
617s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
617s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
617s Selecting previously unselected package cpp.
617s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
617s Unpacking cpp (4:13.2.0-7ubuntu1) ...
617s Selecting previously unselected package libcc1-0:amd64.
617s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
617s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
617s Selecting previously unselected package libgomp1:amd64.
617s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
617s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
617s Selecting previously unselected package libitm1:amd64.
617s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
617s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
617s Selecting previously unselected package libatomic1:amd64.
617s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
617s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
617s Selecting previously unselected package libasan8:amd64.
617s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
617s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
617s Selecting previously unselected package liblsan0:amd64.
617s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
617s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
618s Selecting previously unselected package libtsan2:amd64.
618s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
618s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
618s Selecting previously unselected package libubsan1:amd64.
618s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
618s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
618s Selecting previously unselected package libhwasan0:amd64.
618s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
618s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
618s Selecting previously unselected package libquadmath0:amd64.
618s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
618s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
618s Selecting previously unselected package libgcc-13-dev:amd64.
618s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
618s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
618s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
618s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
618s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
618s Selecting previously unselected package gcc-13.
618s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
618s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
618s Selecting previously unselected package gcc-x86-64-linux-gnu.
618s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
618s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
618s Selecting previously unselected package gcc.
618s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
618s Unpacking gcc (4:13.2.0-7ubuntu1) ...
618s Selecting previously unselected package libstdc++-13-dev:amd64.
618s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
618s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
619s Selecting previously unselected package g++-13-x86-64-linux-gnu.
619s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
619s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
619s Selecting previously unselected package g++-13.
619s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
619s Unpacking g++-13 (13.2.0-17ubuntu2) ...
619s Selecting previously unselected package g++-x86-64-linux-gnu.
619s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
619s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
619s Selecting previously unselected package g++.
619s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
619s Unpacking g++ (4:13.2.0-7ubuntu1) ...
619s Selecting previously unselected package build-essential.
619s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
619s Unpacking build-essential (12.10ubuntu1) ...
619s Selecting previously unselected package dctrl-tools.
619s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
619s Unpacking dctrl-tools (2.24-3build2) ...
619s Selecting previously unselected package fonts-dejavu-mono.
619s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
619s Unpacking fonts-dejavu-mono (2.37-8) ...
619s Selecting previously unselected package fonts-dejavu-core.
619s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
619s Unpacking fonts-dejavu-core (2.37-8) ...
619s Selecting previously unselected package fontconfig-config.
619s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
619s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
619s Selecting previously unselected package libfontconfig1:amd64.
619s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
619s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
619s Selecting previously unselected package fontconfig.
619s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
619s Unpacking fontconfig (2.15.0-1ubuntu1) ...
619s Selecting previously unselected package libgfortran5:amd64.
619s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
619s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
619s Selecting previously unselected package libgfortran-13-dev:amd64.
619s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
619s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
619s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
619s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
619s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
620s Selecting previously unselected package gfortran-13.
620s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
620s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
620s Selecting previously unselected package gfortran-x86-64-linux-gnu.
620s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
620s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
620s Selecting previously unselected package gfortran.
620s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
620s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
620s Selecting previously unselected package icu-devtools.
620s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_amd64.deb ...
620s Unpacking icu-devtools (74.2-1ubuntu1) ...
620s Selecting previously unselected package libblas3:amd64.
620s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ...
620s Unpacking libblas3:amd64 (3.12.0-3) ...
620s Selecting previously unselected package libblas-dev:amd64.
620s Preparing to unpack .../048-libblas-dev_3.12.0-3_amd64.deb ...
620s Unpacking libblas-dev:amd64 (3.12.0-3) ...
620s Selecting previously unselected package libbz2-dev:amd64.
620s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
620s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
620s Selecting previously unselected package libpixman-1-0:amd64.
620s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_amd64.deb ...
620s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
620s Selecting previously unselected package libxcb-render0:amd64.
620s Preparing to unpack .../051-libxcb-render0_1.15-1_amd64.deb ...
620s Unpacking libxcb-render0:amd64 (1.15-1) ...
620s Selecting previously unselected package libxcb-shm0:amd64.
620s Preparing to unpack .../052-libxcb-shm0_1.15-1_amd64.deb ...
620s Unpacking libxcb-shm0:amd64 (1.15-1) ...
620s Selecting previously unselected package libxrender1:amd64.
620s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
620s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
620s Selecting previously unselected package libcairo2:amd64.
620s Preparing to unpack .../054-libcairo2_1.18.0-1_amd64.deb ...
620s Unpacking libcairo2:amd64 (1.18.0-1) ...
620s Selecting previously unselected package libdatrie1:amd64.
620s Preparing to unpack .../055-libdatrie1_0.2.13-3_amd64.deb ...
620s Unpacking libdatrie1:amd64 (0.2.13-3) ...
620s Selecting previously unselected package libdeflate0:amd64.
620s Preparing to unpack .../056-libdeflate0_1.19-1_amd64.deb ...
620s Unpacking libdeflate0:amd64 (1.19-1) ...
620s Selecting previously unselected package libgraphite2-3:amd64.
620s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_amd64.deb ...
620s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
620s Selecting previously unselected package libharfbuzz0b:amd64.
620s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_amd64.deb ...
620s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
620s Selecting previously unselected package x11-common.
620s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
620s Unpacking x11-common (1:7.7+23ubuntu2) ...
620s Selecting previously unselected package libice6:amd64.
620s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_amd64.deb ...
620s Unpacking libice6:amd64 (2:1.0.10-1build2) ...
620s Selecting previously unselected package libicu-dev:amd64.
620s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_amd64.deb ...
620s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ...
620s Selecting previously unselected package libjpeg-turbo8:amd64.
620s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
620s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
620s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
620s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ...
620s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
620s Selecting previously unselected package libjpeg8:amd64.
620s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_amd64.deb ...
620s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
621s Selecting previously unselected package libjpeg8-dev:amd64.
621s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
621s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
621s Selecting previously unselected package libjpeg-dev:amd64.
621s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
621s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
621s Selecting previously unselected package liblapack3:amd64.
621s Preparing to unpack .../067-liblapack3_3.12.0-3_amd64.deb ...
621s Unpacking liblapack3:amd64 (3.12.0-3) ...
621s Selecting previously unselected package liblapack-dev:amd64.
621s Preparing to unpack .../068-liblapack-dev_3.12.0-3_amd64.deb ...
621s Unpacking liblapack-dev:amd64 (3.12.0-3) ...
621s Selecting previously unselected package liblerc4:amd64.
621s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
621s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
621s Selecting previously unselected package libncurses-dev:amd64.
621s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ...
621s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
621s Selecting previously unselected package libthai-data.
621s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
621s Unpacking libthai-data (0.1.29-2) ...
621s Selecting previously unselected package libthai0:amd64.
621s Preparing to unpack .../072-libthai0_0.1.29-2_amd64.deb ...
621s Unpacking libthai0:amd64 (0.1.29-2) ...
621s Selecting previously unselected package libpango-1.0-0:amd64.
621s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_amd64.deb ...
621s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ...
621s Selecting previously unselected package libpangoft2-1.0-0:amd64.
621s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ...
621s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
621s Selecting previously unselected package libpangocairo-1.0-0:amd64.
621s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ...
621s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
621s Selecting previously unselected package libpaper1:amd64.
621s Preparing to unpack .../076-libpaper1_1.1.29_amd64.deb ...
621s Unpacking libpaper1:amd64 (1.1.29) ...
621s Selecting previously unselected package libpaper-utils.
621s Preparing to unpack .../077-libpaper-utils_1.1.29_amd64.deb ...
621s Unpacking libpaper-utils (1.1.29) ...
621s Selecting previously unselected package libpcre2-16-0:amd64.
621s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ...
621s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
621s Selecting previously unselected package libpcre2-32-0:amd64.
621s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ...
621s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
621s Selecting previously unselected package libpcre2-posix3:amd64.
621s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ...
621s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
621s Selecting previously unselected package libpcre2-dev:amd64.
621s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_amd64.deb ...
621s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ...
621s Selecting previously unselected package libpkgconf3:amd64.
621s Preparing to unpack .../082-libpkgconf3_1.8.1-2_amd64.deb ...
621s Unpacking libpkgconf3:amd64 (1.8.1-2) ...
621s Selecting previously unselected package zlib1g-dev:amd64.
621s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ...
621s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
621s Selecting previously unselected package libpng-dev:amd64.
621s Preparing to unpack .../084-libpng-dev_1.6.43-1_amd64.deb ...
621s Unpacking libpng-dev:amd64 (1.6.43-1) ...
621s Selecting previously unselected package libreadline-dev:amd64.
621s Preparing to unpack .../085-libreadline-dev_8.2-3_amd64.deb ...
621s Unpacking libreadline-dev:amd64 (8.2-3) ...
621s Selecting previously unselected package libsharpyuv0:amd64.
621s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_amd64.deb ...
621s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ...
621s Selecting previously unselected package libsm6:amd64.
621s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_amd64.deb ...
621s Unpacking libsm6:amd64 (2:1.2.3-1build2) ...
621s Selecting previously unselected package libtcl8.6:amd64.
621s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_amd64.deb ...
621s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ...
621s Selecting previously unselected package libjbig0:amd64.
621s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_amd64.deb ...
621s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ...
621s Selecting previously unselected package libwebp7:amd64.
621s Preparing to unpack .../090-libwebp7_1.3.2-0.4_amd64.deb ...
621s Unpacking libwebp7:amd64 (1.3.2-0.4) ...
622s Selecting previously unselected package libtiff6:amd64.
622s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
622s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
622s Selecting previously unselected package libxft2:amd64.
622s Preparing to unpack .../092-libxft2_2.3.6-1_amd64.deb ...
622s Unpacking libxft2:amd64 (2.3.6-1) ...
622s Selecting previously unselected package libxss1:amd64.
622s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_amd64.deb ...
622s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
622s Selecting previously unselected package libtk8.6:amd64.
622s Preparing to unpack .../094-libtk8.6_8.6.13-2_amd64.deb ...
622s Unpacking libtk8.6:amd64 (8.6.13-2) ...
622s Selecting previously unselected package libxt6:amd64.
622s Preparing to unpack .../095-libxt6_1%3a1.2.1-1.1_amd64.deb ...
622s Unpacking libxt6:amd64 (1:1.2.1-1.1) ...
622s Selecting previously unselected package pkgconf-bin.
622s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_amd64.deb ...
622s Unpacking pkgconf-bin (1.8.1-2) ...
622s Selecting previously unselected package pkgconf:amd64.
622s Preparing to unpack .../097-pkgconf_1.8.1-2_amd64.deb ...
622s Unpacking pkgconf:amd64 (1.8.1-2) ...
622s Selecting previously unselected package pkg-config:amd64.
622s Preparing to unpack .../098-pkg-config_1.8.1-2_amd64.deb ...
622s Unpacking pkg-config:amd64 (1.8.1-2) ...
622s Selecting previously unselected package zip.
622s Preparing to unpack .../099-zip_3.0-13_amd64.deb ...
622s Unpacking zip (3.0-13) ...
622s Selecting previously unselected package unzip.
622s Preparing to unpack .../100-unzip_6.0-28ubuntu3_amd64.deb ...
622s Unpacking unzip (6.0-28ubuntu3) ...
622s Selecting previously unselected package xdg-utils.
622s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
622s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
622s Selecting previously unselected package r-base-core.
622s Preparing to unpack .../102-r-base-core_4.3.2-1build1_amd64.deb ...
622s Unpacking r-base-core (4.3.2-1build1) ...
622s Selecting previously unselected package liblzma-dev:amd64.
622s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_amd64.deb ...
622s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ...
622s Selecting previously unselected package r-base-dev.
622s Preparing to unpack .../104-r-base-dev_4.3.2-1build1_all.deb ...
622s Unpacking r-base-dev (4.3.2-1build1) ...
622s Selecting previously unselected package pkg-r-autopkgtest.
622s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
622s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
622s Selecting previously unselected package r-bioc-biocgenerics.
622s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ...
622s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
622s Selecting previously unselected package r-bioc-biobase.
622s Preparing to unpack .../107-r-bioc-biobase_2.62.0-1_amd64.deb ...
622s Unpacking r-bioc-biobase (2.62.0-1) ...
622s Selecting previously unselected package r-bioc-zlibbioc.
622s Preparing to unpack .../108-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
622s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
622s Selecting previously unselected package r-bioc-affyio.
622s Preparing to unpack .../109-r-bioc-affyio_1.72.0-1_amd64.deb ...
622s Unpacking r-bioc-affyio (1.72.0-1) ...
622s Selecting previously unselected package r-cran-biocmanager.
622s Preparing to unpack .../110-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
622s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
622s Selecting previously unselected package r-bioc-preprocesscore.
622s Preparing to unpack .../111-r-bioc-preprocesscore_1.64.0+ds-1_amd64.deb ...
622s Unpacking r-bioc-preprocesscore (1.64.0+ds-1) ...
623s Selecting previously unselected package r-bioc-affy.
623s Preparing to unpack .../112-r-bioc-affy_1.80.0-1_amd64.deb ...
623s Unpacking r-bioc-affy (1.80.0-1) ...
623s Selecting previously unselected package r-bioc-s4vectors.
623s Preparing to unpack .../113-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ...
623s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
623s Selecting previously unselected package r-bioc-makecdfenv.
623s Preparing to unpack .../114-r-bioc-makecdfenv_1.78.0-1_amd64.deb ...
623s Unpacking r-bioc-makecdfenv (1.78.0-1) ...
623s Selecting previously unselected package r-bioc-iranges.
623s Preparing to unpack .../115-r-bioc-iranges_2.36.0-1_amd64.deb ...
623s Unpacking r-bioc-iranges (2.36.0-1) ...
623s Selecting previously unselected package r-bioc-xvector.
623s Preparing to unpack .../116-r-bioc-xvector_0.42.0-1_amd64.deb ...
623s Unpacking r-bioc-xvector (0.42.0-1) ...
623s Selecting previously unselected package r-cran-bitops.
623s Preparing to unpack .../117-r-cran-bitops_1.0-7-1_amd64.deb ...
623s Unpacking r-cran-bitops (1.0-7-1) ...
623s Selecting previously unselected package r-cran-rcurl.
623s Preparing to unpack .../118-r-cran-rcurl_1.98-1.14+dfsg-1_amd64.deb ...
623s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
623s Selecting previously unselected package r-bioc-genomeinfodbdata.
623s Preparing to unpack .../119-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
623s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
623s Selecting previously unselected package r-bioc-genomeinfodb.
623s Preparing to unpack .../120-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
623s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
623s Selecting previously unselected package r-cran-crayon.
623s Preparing to unpack .../121-r-cran-crayon_1.5.2-1_all.deb ...
623s Unpacking r-cran-crayon (1.5.2-1) ...
623s Selecting previously unselected package r-bioc-biostrings.
623s Preparing to unpack .../122-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ...
623s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
623s Selecting previously unselected package r-bioc-graph.
623s Preparing to unpack .../123-r-bioc-graph_1.80.0-1_amd64.deb ...
623s Unpacking r-bioc-graph (1.80.0-1) ...
623s Selecting previously unselected package r-bioc-hypergraph.
623s Preparing to unpack .../124-r-bioc-hypergraph_1.74.0-1_all.deb ...
623s Unpacking r-bioc-hypergraph (1.74.0-1) ...
623s Selecting previously unselected package r-bioc-altcdfenvs.
623s Preparing to unpack .../125-r-bioc-altcdfenvs_1%3a2.64.0-1_all.deb ...
623s Unpacking r-bioc-altcdfenvs (1:2.64.0-1) ...
623s Selecting previously unselected package r-cran-rcolorbrewer.
623s Preparing to unpack .../126-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
623s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
623s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
623s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
623s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
623s Setting up libpaper1:amd64 (1.1.29) ...
623s 
623s Creating config file /etc/papersize with new version
623s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
623s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
623s Setting up libdatrie1:amd64 (0.2.13-3) ...
623s Setting up libxcb-render0:amd64 (1.15-1) ...
623s Setting up unzip (6.0-28ubuntu3) ...
623s Setting up x11-common (1:7.7+23ubuntu2) ...
624s Setting up libdeflate0:amd64 (1.19-1) ...
624s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
624s Setting up libxcb-shm0:amd64 (1.15-1) ...
624s Setting up libpaper-utils (1.1.29) ...
624s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
624s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
624s Setting up zip (3.0-13) ...
624s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
624s Setting up libblas3:amd64 (3.12.0-3) ...
624s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
624s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
624s Setting up libpkgconf3:amd64 (1.8.1-2) ...
624s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
624s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
624s Setting up fonts-dejavu-mono (2.37-8) ...
624s Setting up libmpc3:amd64 (1.3.1-1) ...
624s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
624s Setting up icu-devtools (74.2-1ubuntu1) ...
624s Setting up fonts-dejavu-core (2.37-8) ...
624s Setting up pkgconf-bin (1.8.1-2) ...
624s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
624s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libwebp7:amd64 (1.3.2-0.4) ...
624s Setting up liblzma-dev:amd64 (5.4.5-0.3) ...
624s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
624s Setting up libnsl-dev:amd64 (1.3.0-3) ...
624s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
624s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
624s Setting up libthai-data (0.1.29-2) ...
624s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
624s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libisl23:amd64 (0.26-3) ...
624s Setting up libc-dev-bin (2.39-0ubuntu2) ...
624s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
624s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
624s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
624s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libblas-dev:amd64 (3.12.0-3) ...
624s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
624s Setting up dctrl-tools (2.24-3build2) ...
624s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
624s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
624s Setting up libice6:amd64 (2:1.0.10-1build2) ...
624s Setting up liblapack3:amd64 (3.12.0-3) ...
624s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
624s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
624s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
624s Setting up pkgconf:amd64 (1.8.1-2) ...
624s Setting up libthai0:amd64 (0.1.29-2) ...
624s Setting up liblapack-dev:amd64 (3.12.0-3) ...
624s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
624s Setting up pkg-config:amd64 (1.8.1-2) ...
624s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
624s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
624s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
624s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
624s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
624s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
624s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
624s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
624s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
624s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
624s Setting up fontconfig (2.15.0-1ubuntu1) ...
626s Regenerating fonts cache... done.
626s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
626s Setting up libxft2:amd64 (2.3.6-1) ...
626s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
626s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
626s Setting up cpp-13 (13.2.0-17ubuntu2) ...
626s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
626s Setting up libtk8.6:amd64 (8.6.13-2) ...
626s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
626s Setting up libreadline-dev:amd64 (8.2-3) ...
626s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
626s Setting up libcairo2:amd64 (1.18.0-1) ...
626s Setting up gcc-13 (13.2.0-17ubuntu2) ...
626s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
626s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
626s Setting up cpp (4:13.2.0-7ubuntu1) ...
626s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
626s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
626s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
626s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
626s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
626s Setting up libpng-dev:amd64 (1.6.43-1) ...
626s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
626s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
626s Setting up gcc (4:13.2.0-7ubuntu1) ...
626s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
626s Setting up r-base-core (4.3.2-1build1) ...
626s 
626s Creating config file /etc/R/Renviron with new version
626s Setting up r-cran-crayon (1.5.2-1) ...
626s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
626s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
626s Setting up g++-13 (13.2.0-17ubuntu2) ...
626s Setting up r-bioc-biocgenerics (0.48.1-2) ...
626s Setting up gfortran (4:13.2.0-7ubuntu1) ...
626s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
626s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
626s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
626s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
626s Setting up r-cran-bitops (1.0-7-1) ...
626s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
626s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
626s Setting up r-bioc-biobase (2.62.0-1) ...
626s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
626s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
626s Setting up g++ (4:13.2.0-7ubuntu1) ...
626s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
626s Setting up build-essential (12.10ubuntu1) ...
626s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ...
626s Setting up r-bioc-iranges (2.36.0-1) ...
626s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
626s Setting up r-bioc-graph (1.80.0-1) ...
626s Setting up r-bioc-affyio (1.72.0-1) ...
626s Setting up r-base-dev (4.3.2-1build1) ...
626s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
626s Setting up r-bioc-affy (1.80.0-1) ...
626s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
626s Setting up r-bioc-xvector (0.42.0-1) ...
626s Setting up r-bioc-hypergraph (1.74.0-1) ...
626s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
626s Setting up r-bioc-makecdfenv (1.78.0-1) ...
626s Setting up r-bioc-altcdfenvs (1:2.64.0-1) ...
626s Processing triggers for libc-bin (2.39-0ubuntu2) ...
627s Processing triggers for man-db (2.12.0-3) ...
628s Processing triggers for install-info (7.1-3) ...
630s Reading package lists...
630s Building dependency tree...
630s Reading state information...
631s Starting pkgProblemResolver with broken count: 0
631s Starting 2 pkgProblemResolver with broken count: 0
631s Done
631s The following NEW packages will be installed:
631s   autopkgtest-satdep
631s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
631s Need to get 0 B/696 B of archives.
631s After this operation, 0 B of additional disk space will be used.
631s Get:1 /tmp/autopkgtest.x1dMiw/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
631s Selecting previously unselected package autopkgtest-satdep.
631s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78548 files and directories currently installed.)
631s Preparing to unpack .../2-autopkgtest-satdep.deb ...
631s Unpacking autopkgtest-satdep (0) ...
631s Setting up autopkgtest-satdep (0) ...
633s (Reading database ... 78548 files and directories currently installed.)
633s Removing autopkgtest-satdep (0) ...
633s autopkgtest [00:52:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
633s autopkgtest [00:52:56]: test pkg-r-autopkgtest: [-----------------------
633s Test: Try to load the R library altcdfenvs
633s 
633s R version 4.3.2 (2023-10-31) -- "Eye Holes"
633s Copyright (C) 2023 The R Foundation for Statistical Computing
633s Platform: x86_64-pc-linux-gnu (64-bit)
633s 
633s R is free software and comes with ABSOLUTELY NO WARRANTY.
633s You are welcome to redistribute it under certain conditions.
633s Type 'license()' or 'licence()' for distribution details.
633s 
633s R is a collaborative project with many contributors.
633s Type 'contributors()' for more information and
633s 'citation()' on how to cite R or R packages in publications.
633s 
633s Type 'demo()' for some demos, 'help()' for on-line help, or
633s 'help.start()' for an HTML browser interface to help.
633s Type 'q()' to quit R.
633s 
633s > library('altcdfenvs')
633s Loading required package: BiocGenerics
634s 
634s Attaching package: ‘BiocGenerics’
634s 
634s The following objects are masked from ‘package:stats’:
634s 
634s     IQR, mad, sd, var, xtabs
634s 
634s The following objects are masked from ‘package:base’:
634s 
634s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
634s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
634s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
634s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
634s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
634s     table, tapply, union, unique, unsplit, which.max, which.min
634s 
634s Loading required package: S4Vectors
634s Loading required package: stats4
634s 
634s Attaching package: ‘S4Vectors’
634s 
634s The following object is masked from ‘package:utils’:
634s 
634s     findMatches
634s 
634s The following objects are masked from ‘package:base’:
634s 
634s     expand.grid, I, unname
634s 
634s Loading required package: Biobase
634s Welcome to Bioconductor
634s 
634s     Vignettes contain introductory material; view with
634s     'browseVignettes()'. To cite Bioconductor, see
634s     'citation("Biobase")', and for packages 'citation("pkgname")'.
634s 
634s Loading required package: affy
634s Loading required package: makecdfenv
634s Loading required package: affyio
634s Loading required package: Biostrings
634s Loading required package: IRanges
635s Loading required package: XVector
635s Loading required package: GenomeInfoDb
636s 
636s Attaching package: ‘Biostrings’
636s 
636s The following object is masked from ‘package:base’:
636s 
636s     strsplit
636s 
636s Loading required package: hypergraph
636s Loading required package: graph
636s 
636s Attaching package: ‘graph’
636s 
636s The following object is masked from ‘package:Biostrings’:
636s 
636s     complement
636s 
636s > 
636s > 
636s Other tests are currently unsupported!
636s They will be progressively added.
637s autopkgtest [00:53:00]: test pkg-r-autopkgtest: -----------------------]
637s autopkgtest [00:53:00]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
637s pkg-r-autopkgtest    PASS
637s autopkgtest [00:53:00]: @@@@@@@@@@@@@@@@@@@@ summary
637s pkg-r-autopkgtest    PASS
649s Creating nova instance adt-noble-i386-r-bioc-altcdfenvs-20240322-004223-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...