0s autopkgtest [00:41:26]: starting date and time: 2024-03-22 00:41:26+0000
  0s autopkgtest [00:41:26]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [00:41:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.815wpc9e/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-bioc-all --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-38.secgroup --name adt-noble-i386-r-bioc-all-20240322-004126-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
442s autopkgtest [00:48:48]: testbed dpkg architecture: amd64
442s autopkgtest [00:48:48]: testbed apt version: 2.7.12
442s autopkgtest [00:48:48]: test architecture: i386
442s autopkgtest [00:48:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup
442s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
442s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
442s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB]
443s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
443s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
443s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
443s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
443s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
443s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
443s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
443s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
443s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB]
443s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
443s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
443s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
443s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
443s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
446s Fetched 11.3 MB in 2s (7513 kB/s)
446s Reading package lists...
448s Reading package lists...
448s Building dependency tree...
448s Reading state information...
448s Calculating upgrade...
448s The following packages will be upgraded:
448s   cloud-init fonts-ubuntu-console python3-markupsafe
449s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
449s Need to get 629 kB of archives.
449s After this operation, 11.3 kB disk space will be freed.
449s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
449s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
449s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
449s Preconfiguring packages ...
449s Fetched 629 kB in 0s (14.0 MB/s)
449s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
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(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
449s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
449s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
449s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
449s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
449s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
449s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
450s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
450s Setting up cloud-init (24.1.2-0ubuntu1) ...
451s Setting up python3-markupsafe (2.1.5-1build1) ...
451s Processing triggers for man-db (2.12.0-3) ...
452s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
453s Reading package lists...
453s Building dependency tree...
453s Reading state information...
453s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
453s sh: Attempting to set up Debian/Ubuntu apt sources automatically
453s sh: Distribution appears to be Ubuntu
454s Reading package lists...
454s Building dependency tree...
454s Reading state information...
454s eatmydata is already the newest version (131-1).
454s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
454s Reading package lists...
455s Building dependency tree...
455s Reading state information...
455s dbus is already the newest version (1.14.10-4ubuntu1).
455s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
455s Reading package lists...
455s Building dependency tree...
455s Reading state information...
456s rng-tools-debian is already the newest version (2.4).
456s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
456s Reading package lists...
456s Building dependency tree...
456s Reading state information...
457s The following packages will be REMOVED:
457s   cloud-init* python3-configobj* python3-debconf*
457s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
457s After this operation, 3256 kB disk space will be freed.
457s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
457s Removing cloud-init (24.1.2-0ubuntu1) ...
457s Removing python3-configobj (5.0.8-3) ...
458s Removing python3-debconf (1.5.86) ...
458s Processing triggers for man-db (2.12.0-3) ...
458s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
458s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
459s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
459s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
459s invoke-rc.d: policy-rc.d denied execution of try-restart.
459s Reading package lists...
459s Building dependency tree...
459s Reading state information...
459s linux-generic is already the newest version (6.8.0-11.11+1).
459s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
460s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
460s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
460s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
462s Reading package lists...
462s Reading package lists...
462s Building dependency tree...
462s Reading state information...
462s Calculating upgrade...
463s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
463s Reading package lists...
463s Building dependency tree...
463s Reading state information...
463s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
463s autopkgtest [00:49:09]: rebooting testbed after setup commands that affected boot
719s autopkgtest [00:53:25]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
720s autopkgtest [00:53:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-all
721s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-all 1.44.0-1 (dsc) [2034 B]
721s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-all 1.44.0-1 (tar) [11.4 MB]
721s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-all 1.44.0-1 (diff) [5060 B]
721s gpgv: Signature made Thu Nov 30 10:44:06 2023 UTC
721s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
721s gpgv:                issuer "tille@debian.org"
721s gpgv: Can't check signature: No public key
721s dpkg-source: warning: cannot verify inline signature for ./r-bioc-all_1.44.0-1.dsc: no acceptable signature found
721s autopkgtest [00:53:27]: testing package r-bioc-all version 1.44.0-1
721s autopkgtest [00:53:27]: build not needed
723s autopkgtest [00:53:29]: test pkg-r-autopkgtest: preparing testbed
725s Note, using file '/tmp/autopkgtest.0qMps4/1-autopkgtest-satdep.dsc' to get the build dependencies
725s Reading package lists...
726s Building dependency tree...
726s Reading state information...
726s Starting pkgProblemResolver with broken count: 0
726s Starting 2 pkgProblemResolver with broken count: 0
726s Done
727s The following NEW packages will be installed:
727s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
727s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
727s   g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
727s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13
727s   gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8
727s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
727s   libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
727s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
727s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
727s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
727s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
727s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
727s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
727s   libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 libreadline-dev
727s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
727s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
727s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev pkg-config
727s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-all
727s   r-bioc-biobase r-bioc-biocgenerics r-cran-lattice r-cran-matrix r-cran-rpart
727s   r-cran-survival rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
727s 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded.
727s Need to get 164 MB of archives.
727s After this operation, 486 MB of additional disk space will be used.
727s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
727s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
727s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
727s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
727s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
727s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
727s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
727s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
727s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
727s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
727s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
727s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
727s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
727s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
727s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
727s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
727s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
727s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
727s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
727s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
727s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
727s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
727s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
727s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
727s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
727s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
727s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
727s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
727s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
727s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
727s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
727s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
727s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
727s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
727s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB]
727s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
727s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
727s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
727s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
727s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB]
727s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
727s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB]
727s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB]
727s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB]
727s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B]
727s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B]
727s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB]
727s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
727s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB]
727s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB]
727s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
727s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
727s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
727s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
727s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
727s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB]
727s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
727s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
727s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
727s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
727s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB]
727s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB]
728s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
728s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB]
728s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
728s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
728s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
728s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
728s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB]
728s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
728s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB]
728s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB]
728s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB]
728s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB]
728s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB]
728s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB]
728s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB]
728s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B]
728s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB]
728s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB]
728s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B]
728s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB]
728s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB]
728s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB]
728s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB]
728s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB]
728s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
728s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB]
728s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
728s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
728s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
728s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
728s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
728s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
728s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
728s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB]
728s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB]
728s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB]
728s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B]
728s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB]
728s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB]
728s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
728s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB]
728s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB]
728s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B]
728s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
728s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
728s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB]
728s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-all all 1.44.0-1 [11.4 MB]
728s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB]
728s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB]
728s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-8-1 [6120 kB]
728s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rpart amd64 4.1.23-1 [661 kB]
729s Preconfiguring packages ...
729s Fetched 164 MB in 1s (118 MB/s)
729s Selecting previously unselected package libc-dev-bin.
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729s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
729s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
729s Selecting previously unselected package linux-libc-dev:amd64.
729s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ...
729s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
729s Selecting previously unselected package libcrypt-dev:amd64.
729s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
729s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
729s Selecting previously unselected package libtirpc-dev:amd64.
729s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
729s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
729s Selecting previously unselected package libnsl-dev:amd64.
729s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ...
729s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
729s Selecting previously unselected package rpcsvc-proto.
729s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
729s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
729s Selecting previously unselected package libc6-dev:amd64.
729s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ...
729s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
729s Selecting previously unselected package libisl23:amd64.
729s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ...
729s Unpacking libisl23:amd64 (0.26-3) ...
729s Selecting previously unselected package libmpc3:amd64.
730s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ...
730s Unpacking libmpc3:amd64 (1.3.1-1) ...
730s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
730s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
730s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
730s Selecting previously unselected package cpp-13.
730s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
730s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
730s Selecting previously unselected package cpp-x86-64-linux-gnu.
730s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
730s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
730s Selecting previously unselected package cpp.
730s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
730s Unpacking cpp (4:13.2.0-7ubuntu1) ...
730s Selecting previously unselected package libcc1-0:amd64.
730s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libgomp1:amd64.
730s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libitm1:amd64.
730s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libatomic1:amd64.
730s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libasan8:amd64.
730s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package liblsan0:amd64.
730s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libtsan2:amd64.
730s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libubsan1:amd64.
730s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libhwasan0:amd64.
730s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libquadmath0:amd64.
730s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
730s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
730s Selecting previously unselected package libgcc-13-dev:amd64.
730s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
730s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
730s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
730s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
730s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
731s Selecting previously unselected package gcc-13.
731s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
731s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
731s Selecting previously unselected package gcc-x86-64-linux-gnu.
731s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
731s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
731s Selecting previously unselected package gcc.
731s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
731s Unpacking gcc (4:13.2.0-7ubuntu1) ...
731s Selecting previously unselected package libstdc++-13-dev:amd64.
731s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
731s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
731s Selecting previously unselected package g++-13-x86-64-linux-gnu.
731s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
731s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
731s Selecting previously unselected package g++-13.
731s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ...
731s Unpacking g++-13 (13.2.0-17ubuntu2) ...
731s Selecting previously unselected package g++-x86-64-linux-gnu.
731s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
731s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
731s Selecting previously unselected package g++.
731s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
731s Unpacking g++ (4:13.2.0-7ubuntu1) ...
731s Selecting previously unselected package build-essential.
731s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ...
731s Unpacking build-essential (12.10ubuntu1) ...
731s Selecting previously unselected package dctrl-tools.
731s Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ...
731s Unpacking dctrl-tools (2.24-3build2) ...
732s Selecting previously unselected package fonts-dejavu-mono.
732s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
732s Unpacking fonts-dejavu-mono (2.37-8) ...
732s Selecting previously unselected package fonts-dejavu-core.
732s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
732s Unpacking fonts-dejavu-core (2.37-8) ...
732s Selecting previously unselected package fontconfig-config.
732s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
732s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
732s Selecting previously unselected package libfontconfig1:amd64.
732s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
732s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
732s Selecting previously unselected package fontconfig.
732s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_amd64.deb ...
732s Unpacking fontconfig (2.15.0-1ubuntu1) ...
732s Selecting previously unselected package libgfortran5:amd64.
732s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
732s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
732s Selecting previously unselected package libgfortran-13-dev:amd64.
732s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ...
732s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
732s Selecting previously unselected package gfortran-13-x86-64-linux-gnu.
732s Preparing to unpack .../042-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
732s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
732s Selecting previously unselected package gfortran-13.
732s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_amd64.deb ...
732s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
732s Selecting previously unselected package gfortran-x86-64-linux-gnu.
732s Preparing to unpack .../044-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
732s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
732s Selecting previously unselected package gfortran.
732s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ...
732s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
732s Selecting previously unselected package icu-devtools.
732s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_amd64.deb ...
732s Unpacking icu-devtools (74.2-1ubuntu1) ...
732s Selecting previously unselected package libblas3:amd64.
732s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ...
732s Unpacking libblas3:amd64 (3.12.0-3) ...
732s Selecting previously unselected package libblas-dev:amd64.
732s Preparing to unpack .../048-libblas-dev_3.12.0-3_amd64.deb ...
732s Unpacking libblas-dev:amd64 (3.12.0-3) ...
732s Selecting previously unselected package libbz2-dev:amd64.
732s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ...
732s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
733s Selecting previously unselected package libpixman-1-0:amd64.
733s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_amd64.deb ...
733s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
733s Selecting previously unselected package libxcb-render0:amd64.
733s Preparing to unpack .../051-libxcb-render0_1.15-1_amd64.deb ...
733s Unpacking libxcb-render0:amd64 (1.15-1) ...
733s Selecting previously unselected package libxcb-shm0:amd64.
733s Preparing to unpack .../052-libxcb-shm0_1.15-1_amd64.deb ...
733s Unpacking libxcb-shm0:amd64 (1.15-1) ...
733s Selecting previously unselected package libxrender1:amd64.
733s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
733s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
733s Selecting previously unselected package libcairo2:amd64.
733s Preparing to unpack .../054-libcairo2_1.18.0-1_amd64.deb ...
733s Unpacking libcairo2:amd64 (1.18.0-1) ...
733s Selecting previously unselected package libdatrie1:amd64.
733s Preparing to unpack .../055-libdatrie1_0.2.13-3_amd64.deb ...
733s Unpacking libdatrie1:amd64 (0.2.13-3) ...
733s Selecting previously unselected package libdeflate0:amd64.
733s Preparing to unpack .../056-libdeflate0_1.19-1_amd64.deb ...
733s Unpacking libdeflate0:amd64 (1.19-1) ...
733s Selecting previously unselected package libgraphite2-3:amd64.
733s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_amd64.deb ...
733s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
733s Selecting previously unselected package libharfbuzz0b:amd64.
733s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_amd64.deb ...
733s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
733s Selecting previously unselected package x11-common.
733s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
733s Unpacking x11-common (1:7.7+23ubuntu2) ...
733s Selecting previously unselected package libice6:amd64.
733s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_amd64.deb ...
733s Unpacking libice6:amd64 (2:1.0.10-1build2) ...
733s Selecting previously unselected package libicu-dev:amd64.
733s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_amd64.deb ...
733s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ...
733s Selecting previously unselected package libjpeg-turbo8:amd64.
733s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
733s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
733s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
733s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ...
733s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
733s Selecting previously unselected package libjpeg8:amd64.
733s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_amd64.deb ...
733s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
733s Selecting previously unselected package libjpeg8-dev:amd64.
733s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
733s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
733s Selecting previously unselected package libjpeg-dev:amd64.
733s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
733s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
733s Selecting previously unselected package liblapack3:amd64.
733s Preparing to unpack .../067-liblapack3_3.12.0-3_amd64.deb ...
733s Unpacking liblapack3:amd64 (3.12.0-3) ...
733s Selecting previously unselected package liblapack-dev:amd64.
733s Preparing to unpack .../068-liblapack-dev_3.12.0-3_amd64.deb ...
733s Unpacking liblapack-dev:amd64 (3.12.0-3) ...
734s Selecting previously unselected package liblerc4:amd64.
734s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
734s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
734s Selecting previously unselected package libncurses-dev:amd64.
734s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ...
734s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
734s Selecting previously unselected package libthai-data.
734s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
734s Unpacking libthai-data (0.1.29-2) ...
734s Selecting previously unselected package libthai0:amd64.
734s Preparing to unpack .../072-libthai0_0.1.29-2_amd64.deb ...
734s Unpacking libthai0:amd64 (0.1.29-2) ...
734s Selecting previously unselected package libpango-1.0-0:amd64.
734s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_amd64.deb ...
734s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ...
734s Selecting previously unselected package libpangoft2-1.0-0:amd64.
734s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ...
734s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
734s Selecting previously unselected package libpangocairo-1.0-0:amd64.
734s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ...
734s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
734s Selecting previously unselected package libpaper1:amd64.
734s Preparing to unpack .../076-libpaper1_1.1.29_amd64.deb ...
734s Unpacking libpaper1:amd64 (1.1.29) ...
734s Selecting previously unselected package libpaper-utils.
734s Preparing to unpack .../077-libpaper-utils_1.1.29_amd64.deb ...
734s Unpacking libpaper-utils (1.1.29) ...
734s Selecting previously unselected package libpcre2-16-0:amd64.
734s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ...
734s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
734s Selecting previously unselected package libpcre2-32-0:amd64.
734s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ...
734s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
734s Selecting previously unselected package libpcre2-posix3:amd64.
734s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ...
734s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
734s Selecting previously unselected package libpcre2-dev:amd64.
734s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_amd64.deb ...
734s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ...
734s Selecting previously unselected package libpkgconf3:amd64.
734s Preparing to unpack .../082-libpkgconf3_1.8.1-2_amd64.deb ...
734s Unpacking libpkgconf3:amd64 (1.8.1-2) ...
734s Selecting previously unselected package zlib1g-dev:amd64.
734s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ...
734s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
734s Selecting previously unselected package libpng-dev:amd64.
734s Preparing to unpack .../084-libpng-dev_1.6.43-1_amd64.deb ...
734s Unpacking libpng-dev:amd64 (1.6.43-1) ...
734s Selecting previously unselected package libreadline-dev:amd64.
734s Preparing to unpack .../085-libreadline-dev_8.2-3_amd64.deb ...
734s Unpacking libreadline-dev:amd64 (8.2-3) ...
734s Selecting previously unselected package libsharpyuv0:amd64.
734s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_amd64.deb ...
734s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ...
734s Selecting previously unselected package libsm6:amd64.
734s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_amd64.deb ...
734s Unpacking libsm6:amd64 (2:1.2.3-1build2) ...
734s Selecting previously unselected package libtcl8.6:amd64.
734s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_amd64.deb ...
734s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ...
734s Selecting previously unselected package libjbig0:amd64.
734s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_amd64.deb ...
734s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ...
734s Selecting previously unselected package libwebp7:amd64.
734s Preparing to unpack .../090-libwebp7_1.3.2-0.4_amd64.deb ...
734s Unpacking libwebp7:amd64 (1.3.2-0.4) ...
734s Selecting previously unselected package libtiff6:amd64.
734s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
734s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
735s Selecting previously unselected package libxft2:amd64.
735s Preparing to unpack .../092-libxft2_2.3.6-1_amd64.deb ...
735s Unpacking libxft2:amd64 (2.3.6-1) ...
735s Selecting previously unselected package libxss1:amd64.
735s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_amd64.deb ...
735s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
735s Selecting previously unselected package libtk8.6:amd64.
735s Preparing to unpack .../094-libtk8.6_8.6.13-2_amd64.deb ...
735s Unpacking libtk8.6:amd64 (8.6.13-2) ...
735s Selecting previously unselected package libxt6:amd64.
735s Preparing to unpack .../095-libxt6_1%3a1.2.1-1.1_amd64.deb ...
735s Unpacking libxt6:amd64 (1:1.2.1-1.1) ...
735s Selecting previously unselected package pkgconf-bin.
735s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_amd64.deb ...
735s Unpacking pkgconf-bin (1.8.1-2) ...
735s Selecting previously unselected package pkgconf:amd64.
735s Preparing to unpack .../097-pkgconf_1.8.1-2_amd64.deb ...
735s Unpacking pkgconf:amd64 (1.8.1-2) ...
735s Selecting previously unselected package pkg-config:amd64.
735s Preparing to unpack .../098-pkg-config_1.8.1-2_amd64.deb ...
735s Unpacking pkg-config:amd64 (1.8.1-2) ...
735s Selecting previously unselected package zip.
735s Preparing to unpack .../099-zip_3.0-13_amd64.deb ...
735s Unpacking zip (3.0-13) ...
735s Selecting previously unselected package unzip.
735s Preparing to unpack .../100-unzip_6.0-28ubuntu3_amd64.deb ...
735s Unpacking unzip (6.0-28ubuntu3) ...
735s Selecting previously unselected package xdg-utils.
735s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
735s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
735s Selecting previously unselected package r-base-core.
735s Preparing to unpack .../102-r-base-core_4.3.2-1build1_amd64.deb ...
735s Unpacking r-base-core (4.3.2-1build1) ...
735s Selecting previously unselected package liblzma-dev:amd64.
735s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_amd64.deb ...
735s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ...
735s Selecting previously unselected package r-base-dev.
735s Preparing to unpack .../104-r-base-dev_4.3.2-1build1_all.deb ...
735s Unpacking r-base-dev (4.3.2-1build1) ...
735s Selecting previously unselected package pkg-r-autopkgtest.
735s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
735s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
735s Selecting previously unselected package r-bioc-biocgenerics.
735s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ...
735s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
735s Selecting previously unselected package r-bioc-biobase.
735s Preparing to unpack .../107-r-bioc-biobase_2.62.0-1_amd64.deb ...
735s Unpacking r-bioc-biobase (2.62.0-1) ...
735s Selecting previously unselected package r-bioc-all.
735s Preparing to unpack .../108-r-bioc-all_1.44.0-1_all.deb ...
735s Unpacking r-bioc-all (1.44.0-1) ...
736s Selecting previously unselected package r-cran-lattice.
736s Preparing to unpack .../109-r-cran-lattice_0.22-5-1_amd64.deb ...
736s Unpacking r-cran-lattice (0.22-5-1) ...
736s Selecting previously unselected package r-cran-matrix.
736s Preparing to unpack .../110-r-cran-matrix_1.6-5-1_amd64.deb ...
736s Unpacking r-cran-matrix (1.6-5-1) ...
736s Selecting previously unselected package r-cran-survival.
736s Preparing to unpack .../111-r-cran-survival_3.5-8-1_amd64.deb ...
736s Unpacking r-cran-survival (3.5-8-1) ...
736s Selecting previously unselected package r-cran-rpart.
736s Preparing to unpack .../112-r-cran-rpart_4.1.23-1_amd64.deb ...
736s Unpacking r-cran-rpart (4.1.23-1) ...
736s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
736s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
736s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
736s Setting up libpaper1:amd64 (1.1.29) ...
736s 
736s Creating config file /etc/papersize with new version
736s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
736s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
736s Setting up libdatrie1:amd64 (0.2.13-3) ...
736s Setting up libxcb-render0:amd64 (1.15-1) ...
736s Setting up unzip (6.0-28ubuntu3) ...
736s Setting up x11-common (1:7.7+23ubuntu2) ...
736s Setting up libdeflate0:amd64 (1.19-1) ...
736s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
737s Setting up libxcb-shm0:amd64 (1.15-1) ...
737s Setting up libpaper-utils (1.1.29) ...
737s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
737s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ...
737s Setting up zip (3.0-13) ...
737s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ...
737s Setting up libblas3:amd64 (3.12.0-3) ...
737s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
737s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
737s Setting up libpkgconf3:amd64 (1.8.1-2) ...
737s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
737s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
737s Setting up fonts-dejavu-mono (2.37-8) ...
737s Setting up libmpc3:amd64 (1.3.1-1) ...
737s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
737s Setting up icu-devtools (74.2-1ubuntu1) ...
737s Setting up fonts-dejavu-core (2.37-8) ...
737s Setting up pkgconf-bin (1.8.1-2) ...
737s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
737s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libwebp7:amd64 (1.3.2-0.4) ...
737s Setting up liblzma-dev:amd64 (5.4.5-0.3) ...
737s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ...
737s Setting up libnsl-dev:amd64 (1.3.0-3) ...
737s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
737s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
737s Setting up libthai-data (0.1.29-2) ...
737s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
737s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libisl23:amd64 (0.26-3) ...
737s Setting up libc-dev-bin (2.39-0ubuntu2) ...
737s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
737s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
737s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
737s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libblas-dev:amd64 (3.12.0-3) ...
737s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
737s Setting up dctrl-tools (2.24-3build2) ...
737s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
737s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
737s Setting up libice6:amd64 (2:1.0.10-1build2) ...
737s Setting up liblapack3:amd64 (3.12.0-3) ...
737s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
737s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
737s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
737s Setting up pkgconf:amd64 (1.8.1-2) ...
737s Setting up libthai0:amd64 (0.1.29-2) ...
737s Setting up liblapack-dev:amd64 (3.12.0-3) ...
737s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
737s Setting up pkg-config:amd64 (1.8.1-2) ...
737s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
737s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
737s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
737s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
737s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ...
737s Setting up libsm6:amd64 (2:1.2.3-1build2) ...
737s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ...
737s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
737s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ...
737s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
737s Setting up fontconfig (2.15.0-1ubuntu1) ...
739s Regenerating fonts cache... done.
739s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ...
739s Setting up libxft2:amd64 (2.3.6-1) ...
739s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ...
739s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ...
739s Setting up cpp-13 (13.2.0-17ubuntu2) ...
739s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
739s Setting up libtk8.6:amd64 (8.6.13-2) ...
739s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ...
739s Setting up libreadline-dev:amd64 (8.2-3) ...
739s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
739s Setting up libcairo2:amd64 (1.18.0-1) ...
739s Setting up gcc-13 (13.2.0-17ubuntu2) ...
739s Setting up libxt6:amd64 (1:1.2.1-1.1) ...
739s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ...
739s Setting up cpp (4:13.2.0-7ubuntu1) ...
739s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ...
739s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ...
739s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ...
739s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
739s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
739s Setting up libpng-dev:amd64 (1.6.43-1) ...
739s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ...
739s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
739s Setting up gcc (4:13.2.0-7ubuntu1) ...
739s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
739s Setting up r-base-core (4.3.2-1build1) ...
739s 
739s Creating config file /etc/R/Renviron with new version
739s Setting up r-cran-lattice (0.22-5-1) ...
739s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
739s Setting up g++-13 (13.2.0-17ubuntu2) ...
739s Setting up r-bioc-biocgenerics (0.48.1-2) ...
739s Setting up gfortran (4:13.2.0-7ubuntu1) ...
739s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
739s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
739s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
739s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
739s Setting up r-bioc-biobase (2.62.0-1) ...
739s Setting up r-cran-matrix (1.6-5-1) ...
739s Setting up g++ (4:13.2.0-7ubuntu1) ...
739s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
739s Setting up build-essential (12.10ubuntu1) ...
739s Setting up r-base-dev (4.3.2-1build1) ...
739s Setting up r-bioc-all (1.44.0-1) ...
739s Setting up r-cran-survival (3.5-8-1) ...
739s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
739s Setting up r-cran-rpart (4.1.23-1) ...
739s Processing triggers for install-info (7.1-3) ...
739s Processing triggers for libc-bin (2.39-0ubuntu2) ...
740s Processing triggers for man-db (2.12.0-3) ...
742s Reading package lists...
742s Building dependency tree...
742s Reading state information...
743s Starting pkgProblemResolver with broken count: 0
743s Starting 2 pkgProblemResolver with broken count: 0
743s Done
743s The following NEW packages will be installed:
743s   autopkgtest-satdep
743s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
743s Need to get 0 B/696 B of archives.
743s After this operation, 0 B of additional disk space will be used.
743s Get:1 /tmp/autopkgtest.0qMps4/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
744s Selecting previously unselected package autopkgtest-satdep.
744s (Reading database ... 
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(Reading database ... 77726 files and directories currently installed.)
744s Preparing to unpack .../2-autopkgtest-satdep.deb ...
744s Unpacking autopkgtest-satdep (0) ...
744s Setting up autopkgtest-satdep (0) ...
746s (Reading database ... 77726 files and directories currently installed.)
746s Removing autopkgtest-satdep (0) ...
746s autopkgtest [00:53:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
746s autopkgtest [00:53:52]: test pkg-r-autopkgtest: [-----------------------
746s Test: Try to load the R library ALL
746s 
746s R version 4.3.2 (2023-10-31) -- "Eye Holes"
746s Copyright (C) 2023 The R Foundation for Statistical Computing
746s Platform: x86_64-pc-linux-gnu (64-bit)
746s 
746s R is free software and comes with ABSOLUTELY NO WARRANTY.
746s You are welcome to redistribute it under certain conditions.
746s Type 'license()' or 'licence()' for distribution details.
746s 
746s R is a collaborative project with many contributors.
746s Type 'contributors()' for more information and
746s 'citation()' on how to cite R or R packages in publications.
746s 
746s Type 'demo()' for some demos, 'help()' for on-line help, or
746s 'help.start()' for an HTML browser interface to help.
746s Type 'q()' to quit R.
746s 
746s > library('ALL')
746s Loading required package: Biobase
746s Loading required package: BiocGenerics
747s 
747s Attaching package: ‘BiocGenerics’
747s 
747s The following objects are masked from ‘package:stats’:
747s 
747s     IQR, mad, sd, var, xtabs
747s 
747s The following objects are masked from ‘package:base’:
747s 
747s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
747s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
747s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
747s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
747s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
747s     table, tapply, union, unique, unsplit, which.max, which.min
747s 
747s Welcome to Bioconductor
747s 
747s     Vignettes contain introductory material; view with
747s     'browseVignettes()'. To cite Bioconductor, see
747s     'citation("Biobase")', and for packages 'citation("pkgname")'.
747s 
747s > 
747s > 
747s Other tests are currently unsupported!
747s They will be progressively added.
747s autopkgtest [00:53:53]: test pkg-r-autopkgtest: -----------------------]
747s pkg-r-autopkgtest    PASS
747s autopkgtest [00:53:53]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
747s autopkgtest [00:53:53]: @@@@@@@@@@@@@@@@@@@@ summary
747s pkg-r-autopkgtest    PASS
766s Creating nova instance adt-noble-i386-r-bioc-all-20240322-004126-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...