0s autopkgtest [12:06:46]: starting date and time: 2024-03-21 12:06:46+0000
  0s autopkgtest [12:06:46]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [12:06:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kg0dx4qg/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:h5py --apt-upgrade pynwb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-1.secgroup --name adt-noble-i386-pynwb-20240321-120646-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
417s autopkgtest [12:13:43]: testbed dpkg architecture: amd64
417s autopkgtest [12:13:43]: testbed apt version: 2.7.12
417s autopkgtest [12:13:43]: test architecture: i386
417s autopkgtest [12:13:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup
417s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
417s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
417s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
417s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3770 kB]
417s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
417s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [695 kB]
417s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB]
417s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
417s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
417s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
417s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
417s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1281 kB]
418s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB]
418s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
418s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
418s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
418s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
421s Fetched 11.3 MB in 1s (7910 kB/s)
421s Reading package lists...
422s Reading package lists...
423s Building dependency tree...
423s Reading state information...
423s Calculating upgrade...
423s The following packages will be upgraded:
423s   debianutils linux-firmware
423s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
423s Need to get 476 MB of archives.
423s After this operation, 5724 kB of additional disk space will be used.
423s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB]
423s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB]
427s Fetched 476 MB in 3s (144 MB/s)
427s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71803 files and directories currently installed.)
427s Preparing to unpack .../debianutils_5.17_amd64.deb ...
427s Unpacking debianutils (5.17) over (5.16) ...
427s Setting up debianutils (5.17) ...
427s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71803 files and directories currently installed.)
427s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ...
427s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ...
430s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ...
430s Processing triggers for man-db (2.12.0-3) ...
431s Processing triggers for initramfs-tools (0.142ubuntu20) ...
431s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
431s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
438s Reading package lists...
438s Building dependency tree...
438s Reading state information...
439s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
439s sh: Attempting to set up Debian/Ubuntu apt sources automatically
439s sh: Distribution appears to be Ubuntu
440s Reading package lists...
440s Building dependency tree...
440s Reading state information...
440s eatmydata is already the newest version (131-1).
440s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
440s Reading package lists...
441s Building dependency tree...
441s Reading state information...
441s dbus is already the newest version (1.14.10-4ubuntu1).
441s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
441s Reading package lists...
441s Building dependency tree...
441s Reading state information...
441s rng-tools-debian is already the newest version (2.4).
441s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
441s Reading package lists...
442s Building dependency tree...
442s Reading state information...
442s The following packages will be REMOVED:
442s   cloud-init* python3-configobj* python3-debconf*
442s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
442s After this operation, 3252 kB disk space will be freed.
442s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
442s Removing cloud-init (24.1.1-0ubuntu1) ...
443s Removing python3-configobj (5.0.8-3) ...
443s Removing python3-debconf (1.5.86) ...
443s Processing triggers for man-db (2.12.0-3) ...
443s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71476 files and directories currently installed.)
443s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
444s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
444s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
444s invoke-rc.d: policy-rc.d denied execution of try-restart.
444s Reading package lists...
444s Building dependency tree...
444s Reading state information...
444s linux-generic is already the newest version (6.8.0-11.11+1).
444s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
444s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
444s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
444s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
446s Reading package lists...
447s Reading package lists...
447s Building dependency tree...
447s Reading state information...
447s Calculating upgrade...
447s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
447s Reading package lists...
447s Building dependency tree...
447s Reading state information...
448s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
448s autopkgtest [12:14:14]: rebooting testbed after setup commands that affected boot
470s autopkgtest [12:14:36]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
471s autopkgtest [12:14:37]: @@@@@@@@@@@@@@@@@@@@ apt-source pynwb
472s Get:1 http://ftpmaster.internal/ubuntu noble/universe pynwb 2.5.0-1 (dsc) [2156 B]
472s Get:2 http://ftpmaster.internal/ubuntu noble/universe pynwb 2.5.0-1 (tar) [621 kB]
472s Get:3 http://ftpmaster.internal/ubuntu noble/universe pynwb 2.5.0-1 (diff) [6328 B]
472s gpgv: Signature made Fri Dec 22 15:42:20 2023 UTC
472s gpgv:                using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA
472s gpgv: Can't check signature: No public key
472s dpkg-source: warning: cannot verify inline signature for ./pynwb_2.5.0-1.dsc: no acceptable signature found
473s autopkgtest [12:14:38]: testing package pynwb version 2.5.0-1
473s autopkgtest [12:14:39]: build not needed
473s autopkgtest [12:14:39]: test autodep8-python3: preparing testbed
475s Note, using file '/tmp/autopkgtest.tssUFT/1-autopkgtest-satdep.dsc' to get the build dependencies
475s Reading package lists...
476s Building dependency tree...
476s Reading state information...
476s Starting pkgProblemResolver with broken count: 0
476s Starting 2 pkgProblemResolver with broken count: 0
476s Done
476s The following NEW packages will be installed:
476s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++
476s   g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13
476s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu libaec0 libasan8 libatomic1
476s   libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
476s   libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwasan0 libisl23
476s   libitm1 liblapack3 liblbfgsb0 liblsan0 liblzf1 libmpc3 libnsl-dev
476s   libquadmath0 libstdc++-13-dev libsz2 libtirpc-dev libtsan2 libubsan1
476s   linux-libc-dev python3-all python3-dateutil python3-decorator python3-h5py
476s   python3-h5py-serial python3-hdmf python3-numpy python3-pandas
476s   python3-pandas-lib python3-pynwb python3-ruamel.yaml
476s   python3-ruamel.yaml.clib python3-scipy rpcsvc-proto
476s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded.
476s Need to get 112 MB of archives.
476s After this operation, 476 MB of additional disk space will be used.
476s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
477s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
477s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
477s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
477s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
477s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
477s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
477s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
477s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
477s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
477s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
477s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
477s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
477s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
477s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
477s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
477s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
477s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
477s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
477s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
477s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
477s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
477s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
477s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
477s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
477s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
477s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
477s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
477s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
477s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
477s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
477s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
477s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
477s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
477s Get:35 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB]
477s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
477s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
477s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B]
477s Get:39 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB]
477s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB]
477s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
477s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [30.4 kB]
477s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
477s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 python3-all amd64 3.12.1-0ubuntu2 [906 B]
477s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 python3-dateutil all 2.8.2-3 [79.2 kB]
477s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
477s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB]
477s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB]
477s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B]
477s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-4ubuntu2 [8348 kB]
477s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
477s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-scipy amd64 1.11.4-6 [19.4 MB]
477s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8-1 [205 kB]
477s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB]
477s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-hdmf all 3.11.0-2 [270 kB]
477s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pynwb all 2.5.0-1 [109 kB]
478s Fetched 112 MB in 1s (124 MB/s)
478s Selecting previously unselected package libc-dev-bin.
478s (Reading database ... 
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71421 files and directories currently installed.)
478s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
478s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
478s Selecting previously unselected package linux-libc-dev:amd64.
478s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ...
478s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
478s Selecting previously unselected package libcrypt-dev:amd64.
478s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
478s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
478s Selecting previously unselected package libtirpc-dev:amd64.
478s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
478s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
478s Selecting previously unselected package libnsl-dev:amd64.
478s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ...
478s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
478s Selecting previously unselected package rpcsvc-proto.
478s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
478s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
478s Selecting previously unselected package libc6-dev:amd64.
478s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ...
478s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
478s Selecting previously unselected package libisl23:amd64.
478s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ...
478s Unpacking libisl23:amd64 (0.26-3) ...
478s Selecting previously unselected package libmpc3:amd64.
478s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ...
478s Unpacking libmpc3:amd64 (1.3.1-1) ...
479s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
479s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
479s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
479s Selecting previously unselected package cpp-13.
479s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
479s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
479s Selecting previously unselected package cpp-x86-64-linux-gnu.
479s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
479s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
479s Selecting previously unselected package cpp.
479s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
479s Unpacking cpp (4:13.2.0-7ubuntu1) ...
479s Selecting previously unselected package libcc1-0:amd64.
479s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
479s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
479s Selecting previously unselected package libgomp1:amd64.
479s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
479s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
479s Selecting previously unselected package libitm1:amd64.
479s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_amd64.deb ...
479s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
479s Selecting previously unselected package libatomic1:amd64.
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479s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
479s Selecting previously unselected package libasan8:amd64.
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479s Selecting previously unselected package liblsan0:amd64.
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479s Selecting previously unselected package libtsan2:amd64.
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479s Selecting previously unselected package libubsan1:amd64.
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479s Selecting previously unselected package libhwasan0:amd64.
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479s Selecting previously unselected package libquadmath0:amd64.
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479s Selecting previously unselected package libgcc-13-dev:amd64.
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480s Selecting previously unselected package gcc-x86-64-linux-gnu.
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480s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
480s Selecting previously unselected package gcc.
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480s Selecting previously unselected package libstdc++-13-dev:amd64.
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480s Selecting previously unselected package g++-13.
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480s Selecting previously unselected package libgfortran5:amd64.
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480s Selecting previously unselected package libsz2:amd64.
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481s Selecting previously unselected package liblapack3:amd64.
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483s Setting up python3-ruamel.yaml.clib:amd64 (0.2.8-1) ...
483s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
483s Setting up python3-all (3.12.1-0ubuntu2) ...
483s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
483s Setting up libaec0:amd64 (1.1.2-1) ...
483s Setting up python3-decorator (5.1.1-5) ...
483s Setting up libblas3:amd64 (3.12.0-3) ...
483s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
483s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
483s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
483s Setting up liblzf1:amd64 (3.6-4) ...
483s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
483s Setting up libmpc3:amd64 (1.3.1-1) ...
483s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
483s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
483s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
483s Setting up python3-ruamel.yaml (0.17.21-1) ...
483s Setting up libnsl-dev:amd64 (1.3.0-3) ...
483s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
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483s Setting up python3-dateutil (2.8.2-3) ...
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483s Setting up liblapack3:amd64 (3.12.0-3) ...
483s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
483s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
483s Setting up python3-numpy (1:1.24.2-2) ...
485s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ...
485s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
485s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
485s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
485s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ...
485s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ...
485s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
485s Setting up python3-scipy (1.11.4-6) ...
487s Setting up cpp-13 (13.2.0-17ubuntu2) ...
487s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
487s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ...
487s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ...
487s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
491s Setting up python3-h5py (3.10.0-1ubuntu1) ...
491s Setting up gcc-13 (13.2.0-17ubuntu2) ...
491s Setting up cpp (4:13.2.0-7ubuntu1) ...
491s Setting up python3-hdmf (3.11.0-2) ...
491s /usr/lib/python3/dist-packages/hdmf/common/hdmf-common-schema/docs/source/conf.py:220: SyntaxWarning: invalid escape sequence '\s'
491s   """
491s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
491s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
491s Setting up gcc (4:13.2.0-7ubuntu1) ...
491s Setting up python3-pynwb (2.5.0-1) ...
492s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
492s Setting up g++-13 (13.2.0-17ubuntu2) ...
492s Setting up g++ (4:13.2.0-7ubuntu1) ...
492s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
492s Setting up build-essential (12.10ubuntu1) ...
492s Processing triggers for man-db (2.12.0-3) ...
493s Processing triggers for libc-bin (2.39-0ubuntu2) ...
498s Reading package lists...
498s Building dependency tree...
498s Reading state information...
498s Starting pkgProblemResolver with broken count: 0
498s Starting 2 pkgProblemResolver with broken count: 0
498s Done
499s The following NEW packages will be installed:
499s   autopkgtest-satdep
499s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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499s After this operation, 0 B of additional disk space will be used.
499s Get:1 /tmp/autopkgtest.tssUFT/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
499s Selecting previously unselected package autopkgtest-satdep.
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499s Preparing to unpack .../2-autopkgtest-satdep.deb ...
499s Unpacking autopkgtest-satdep (0) ...
499s Setting up autopkgtest-satdep (0) ...
499s autopkgtest: WARNING: package python3-pynwb:i386 is not installed though it should be
501s (Reading database ... 79123 files and directories currently installed.)
501s Removing autopkgtest-satdep (0) ...
501s autopkgtest [12:15:07]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pynwb; print(pynwb)" ; done
501s autopkgtest [12:15:07]: test autodep8-python3: [-----------------------
501s Testing with python3.12:
502s <module 'pynwb' from '/usr/lib/python3/dist-packages/pynwb/__init__.py'>
503s autopkgtest [12:15:09]: test autodep8-python3: -----------------------]
503s autodep8-python3     PASS (superficial)
503s autopkgtest [12:15:09]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
503s autopkgtest [12:15:09]: @@@@@@@@@@@@@@@@@@@@ summary
503s autodep8-python3     PASS (superficial)
516s Creating nova instance adt-noble-i386-pynwb-20240321-120646-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...