0s autopkgtest [12:04:03]: starting date and time: 2024-03-21 12:04:03+0000 0s autopkgtest [12:04:03]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:04:03]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pcdra_aw/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:h5py --apt-upgrade poretools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-85.secgroup --name adt-noble-i386-poretools-20240321-120403-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1075s autopkgtest [12:21:58]: testbed dpkg architecture: amd64 1075s autopkgtest [12:21:58]: testbed apt version: 2.7.12 1075s autopkgtest [12:21:58]: test architecture: i386 1075s autopkgtest [12:21:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1075s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1076s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1076s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 1076s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 1076s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 1076s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 1076s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 1076s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 1076s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 1076s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 1076s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 1076s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 1076s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 1076s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 1076s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 1076s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 1076s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 1079s Fetched 11.3 MB in 1s (7980 kB/s) 1079s Reading package lists... 1080s Reading package lists... 1081s Building dependency tree... 1081s Reading state information... 1081s Calculating upgrade... 1081s The following packages will be upgraded: 1081s debianutils linux-firmware 1081s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1081s Need to get 476 MB of archives. 1081s After this operation, 5724 kB of additional disk space will be used. 1081s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 1081s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 1085s Fetched 476 MB in 3s (145 MB/s) 1085s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 1085s Preparing to unpack .../debianutils_5.17_amd64.deb ... 1085s Unpacking debianutils (5.17) over (5.16) ... 1085s Setting up debianutils (5.17) ... 1085s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 1085s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 1085s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 1089s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 1089s Processing triggers for man-db (2.12.0-3) ... 1090s Processing triggers for initramfs-tools (0.142ubuntu20) ... 1090s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 1090s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1097s Reading package lists... 1097s Building dependency tree... 1097s Reading state information... 1098s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1098s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1098s sh: Distribution appears to be Ubuntu 1099s Reading package lists... 1099s Building dependency tree... 1099s Reading state information... 1100s eatmydata is already the newest version (131-1). 1100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1100s Reading package lists... 1100s Building dependency tree... 1100s Reading state information... 1100s dbus is already the newest version (1.14.10-4ubuntu1). 1100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1100s Reading package lists... 1100s Building dependency tree... 1100s Reading state information... 1101s rng-tools-debian is already the newest version (2.4). 1101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1101s Reading package lists... 1101s Building dependency tree... 1101s Reading state information... 1101s The following packages will be REMOVED: 1101s cloud-init* python3-configobj* python3-debconf* 1102s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1102s After this operation, 3252 kB disk space will be freed. 1102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 1102s Removing cloud-init (24.1.1-0ubuntu1) ... 1102s Removing python3-configobj (5.0.8-3) ... 1102s Removing python3-debconf (1.5.86) ... 1102s Processing triggers for man-db (2.12.0-3) ... 1103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 1103s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 1103s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1103s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1103s invoke-rc.d: policy-rc.d denied execution of try-restart. 1103s Reading package lists... 1104s Building dependency tree... 1104s Reading state information... 1104s linux-generic is already the newest version (6.8.0-11.11+1). 1104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1104s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1104s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1104s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1106s Reading package lists... 1106s Reading package lists... 1106s Building dependency tree... 1106s Reading state information... 1107s Calculating upgrade... 1107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1107s Reading package lists... 1107s Building dependency tree... 1107s Reading state information... 1107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1108s autopkgtest [12:22:31]: rebooting testbed after setup commands that affected boot 1256s autopkgtest [12:24:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 1257s autopkgtest [12:25:00]: @@@@@@@@@@@@@@@@@@@@ apt-source poretools 1259s Get:1 http://ftpmaster.internal/ubuntu noble/universe poretools 0.6.0+dfsg-6 (dsc) [1556 B] 1259s Get:2 http://ftpmaster.internal/ubuntu noble/universe poretools 0.6.0+dfsg-6 (tar) [68.1 MB] 1259s Get:3 http://ftpmaster.internal/ubuntu noble/universe poretools 0.6.0+dfsg-6 (diff) [10.2 kB] 1260s gpgv: Signature made Thu Dec 29 08:43:13 2022 UTC 1260s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 1260s gpgv: Can't check signature: No public key 1260s dpkg-source: warning: cannot verify inline signature for ./poretools_0.6.0+dfsg-6.dsc: no acceptable signature found 1261s autopkgtest [12:25:04]: testing package poretools version 0.6.0+dfsg-6 1261s autopkgtest [12:25:04]: build not needed 1262s autopkgtest [12:25:05]: test run-unit-test: preparing testbed 1264s Note, using file '/tmp/autopkgtest.WIadM9/1-autopkgtest-satdep.dsc' to get the build dependencies 1264s Reading package lists... 1265s Building dependency tree... 1265s Reading state information... 1265s Starting pkgProblemResolver with broken count: 0 1265s Starting 2 pkgProblemResolver with broken count: 0 1265s Done 1265s The following NEW packages will be installed: 1265s blt build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 1265s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-13 1265s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1265s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu libaec0 libasan8 libatomic1 1265s libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate0 1265s libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3 1265s libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhwasan0 libimagequant0 1265s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 1265s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 1265s libmpc3 libnsl-dev libopenjp2-7 libqhull-r8.0 libquadmath0 libraqm0 1265s libsharpyuv0 libstdc++-13-dev libsz2 libtcl8.6 libtiff6 libtirpc-dev 1265s libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 1265s libxrender1 libxslt1.1 libxss1 linux-libc-dev poretools poretools-data 1265s python-matplotlib-data python3-appdirs python3-brotli python3-contourpy 1265s python3-cycler python3-dateutil python3-decorator python3-fonttools 1265s python3-fs python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml 1265s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 1265s python3-packaging python3-pandas python3-pandas-lib python3-pil 1265s python3-pil.imagetk python3-scipy python3-seaborn python3-sympy python3-tk 1265s python3-ufolib2 python3-unicodedata2 rpcsvc-proto tk8.6-blt2.5 unicode-data 1265s x11-common 1265s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 1265s Need to get 192 MB of archives. 1265s After this operation, 727 MB of additional disk space will be used. 1265s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 1265s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1265s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1265s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 1265s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 1265s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 1265s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 1265s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1265s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 1265s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 1265s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [630 kB] 1265s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 blt amd64 2.5.3+dfsg-7 [4826 B] 1265s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 1265s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1265s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1265s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 1265s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 1265s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1265s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 1265s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1265s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1265s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1266s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1266s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1266s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1266s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1266s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1266s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1266s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1266s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1266s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1266s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1266s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1266s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1266s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1266s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1266s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1266s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1266s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1266s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1266s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1266s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1266s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1266s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1266s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1266s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1266s Get:47 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lyx all 2.4.0~RC3-1 [170 kB] 1266s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 1266s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1266s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 1266s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1266s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 1266s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 1266s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 1266s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 1266s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 1266s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libimagequant0 amd64 2.18.0-1 [36.3 kB] 1266s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 1266s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1266s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1266s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1266s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1266s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [30.4 kB] 1266s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 1266s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 1266s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 1266s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 1266s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libraqm0 amd64 0.10.1-1 [14.6 kB] 1266s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 1266s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 1266s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 1266s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 1266s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpdemux2 amd64 1.3.2-0.4 [12.4 kB] 1266s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpmux3 amd64 1.3.2-0.4 [25.6 kB] 1266s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libxslt1.1 amd64 1.1.35-1 [164 kB] 1266s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 1266s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 python3-dateutil all 2.8.2-3 [79.2 kB] 1266s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 1266s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 python3-pil amd64 10.2.0-1 [487 kB] 1266s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 python3-tk amd64 3.11.5-1 [112 kB] 1266s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pil.imagetk amd64 10.2.0-1 [9584 B] 1266s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 1266s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-contourpy amd64 1.0.7-1build2 [283 kB] 1266s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-cycler all 0.11.0-2 [8202 B] 1266s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-brotli amd64 1.1.0-2 [340 kB] 1266s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 1266s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-scipy amd64 1.11.4-6 [19.4 MB] 1266s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 1266s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-mpmath all 1.2.1-3 [421 kB] 1266s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sympy all 1.12-7 [3966 kB] 1266s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 1266s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-fs all 2.4.16-3 [91.1 kB] 1266s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 python3-lxml amd64 5.1.0-1 [2179 kB] 1266s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build2 [27.0 kB] 1266s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1 [367 kB] 1266s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 1266s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-fonttools amd64 4.46.0-1 [1693 kB] 1266s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-kiwisolver amd64 1.4.4-1build2 [69.4 kB] 1266s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 python3-packaging all 23.2-1 [40.6 kB] 1266s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-matplotlib amd64 3.6.3-1ubuntu3 [7486 kB] 1266s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-4ubuntu2 [8348 kB] 1267s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 1267s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-seaborn all 0.13.2-2 [225 kB] 1267s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB] 1267s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 1267s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 poretools all 0.6.0+dfsg-6 [19.9 kB] 1267s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 poretools-data all 0.6.0+dfsg-6 [44.0 MB] 1268s Fetched 192 MB in 2s (81.6 MB/s) 1268s Selecting previously unselected package libtcl8.6:amd64. 1268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 1268s Preparing to unpack .../000-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 1268s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 1269s Selecting previously unselected package fonts-dejavu-mono. 1269s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 1269s Unpacking fonts-dejavu-mono (2.37-8) ... 1269s Selecting previously unselected package fonts-dejavu-core. 1269s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 1269s Unpacking fonts-dejavu-core (2.37-8) ... 1269s Selecting previously unselected package fontconfig-config. 1269s Preparing to unpack .../003-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 1269s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1269s Selecting previously unselected package libfontconfig1:amd64. 1269s Preparing to unpack .../004-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 1269s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 1269s Selecting previously unselected package libxrender1:amd64. 1269s Preparing to unpack .../005-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 1269s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 1269s Selecting previously unselected package libxft2:amd64. 1269s Preparing to unpack .../006-libxft2_2.3.6-1_amd64.deb ... 1269s Unpacking libxft2:amd64 (2.3.6-1) ... 1269s Selecting previously unselected package x11-common. 1269s Preparing to unpack .../007-x11-common_1%3a7.7+23ubuntu2_all.deb ... 1269s Unpacking x11-common (1:7.7+23ubuntu2) ... 1269s Selecting previously unselected package libxss1:amd64. 1269s Preparing to unpack .../008-libxss1_1%3a1.2.3-1build2_amd64.deb ... 1269s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 1269s Selecting previously unselected package libtk8.6:amd64. 1269s Preparing to unpack .../009-libtk8.6_8.6.13-2_amd64.deb ... 1269s Unpacking libtk8.6:amd64 (8.6.13-2) ... 1269s Selecting previously unselected package tk8.6-blt2.5. 1269s Preparing to unpack .../010-tk8.6-blt2.5_2.5.3+dfsg-7_amd64.deb ... 1269s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 1269s Selecting previously unselected package blt. 1269s Preparing to unpack .../011-blt_2.5.3+dfsg-7_amd64.deb ... 1269s Unpacking blt (2.5.3+dfsg-7) ... 1269s Selecting previously unselected package libc-dev-bin. 1269s Preparing to unpack .../012-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 1269s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 1269s Selecting previously unselected package linux-libc-dev:amd64. 1269s Preparing to unpack .../013-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1269s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1269s Selecting previously unselected package libcrypt-dev:amd64. 1269s Preparing to unpack .../014-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1269s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1269s Selecting previously unselected package libtirpc-dev:amd64. 1269s Preparing to unpack .../015-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 1269s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1269s Selecting previously unselected package libnsl-dev:amd64. 1269s Preparing to unpack .../016-libnsl-dev_1.3.0-3_amd64.deb ... 1269s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 1270s Selecting previously unselected package rpcsvc-proto. 1270s Preparing to unpack .../017-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1270s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1270s Selecting previously unselected package libc6-dev:amd64. 1270s Preparing to unpack .../018-libc6-dev_2.39-0ubuntu2_amd64.deb ... 1270s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 1270s Selecting previously unselected package libisl23:amd64. 1270s Preparing to unpack .../019-libisl23_0.26-3_amd64.deb ... 1270s Unpacking libisl23:amd64 (0.26-3) ... 1270s Selecting previously unselected package libmpc3:amd64. 1270s Preparing to unpack .../020-libmpc3_1.3.1-1_amd64.deb ... 1270s Unpacking libmpc3:amd64 (1.3.1-1) ... 1270s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1270s Preparing to unpack .../021-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1270s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1270s Selecting previously unselected package cpp-13. 1270s Preparing to unpack .../022-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1270s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1270s Selecting previously unselected package cpp-x86-64-linux-gnu. 1270s Preparing to unpack .../023-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1270s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1270s Selecting previously unselected package cpp. 1270s Preparing to unpack .../024-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1270s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1270s Selecting previously unselected package libcc1-0:amd64. 1270s Preparing to unpack .../025-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libgomp1:amd64. 1270s Preparing to unpack .../026-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libitm1:amd64. 1270s Preparing to unpack .../027-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libatomic1:amd64. 1270s Preparing to unpack .../028-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libasan8:amd64. 1270s Preparing to unpack .../029-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package liblsan0:amd64. 1270s Preparing to unpack .../030-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libtsan2:amd64. 1270s Preparing to unpack .../031-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libubsan1:amd64. 1270s Preparing to unpack .../032-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libhwasan0:amd64. 1270s Preparing to unpack .../033-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libquadmath0:amd64. 1270s Preparing to unpack .../034-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 1270s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1270s Selecting previously unselected package libgcc-13-dev:amd64. 1270s Preparing to unpack .../035-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1270s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 1271s Preparing to unpack .../036-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1271s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package gcc-13. 1271s Preparing to unpack .../037-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 1271s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package gcc-x86-64-linux-gnu. 1271s Preparing to unpack .../038-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1271s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1271s Selecting previously unselected package gcc. 1271s Preparing to unpack .../039-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 1271s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1271s Selecting previously unselected package libstdc++-13-dev:amd64. 1271s Preparing to unpack .../040-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1271s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package g++-13-x86-64-linux-gnu. 1271s Preparing to unpack .../041-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1271s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package g++-13. 1271s Preparing to unpack .../042-g++-13_13.2.0-17ubuntu2_amd64.deb ... 1271s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package g++-x86-64-linux-gnu. 1271s Preparing to unpack .../043-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1271s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1271s Selecting previously unselected package g++. 1271s Preparing to unpack .../044-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 1271s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1271s Selecting previously unselected package build-essential. 1271s Preparing to unpack .../045-build-essential_12.10ubuntu1_amd64.deb ... 1271s Unpacking build-essential (12.10ubuntu1) ... 1272s Selecting previously unselected package fonts-lyx. 1272s Preparing to unpack .../046-fonts-lyx_2.4.0~RC3-1_all.deb ... 1272s Unpacking fonts-lyx (2.4.0~RC3-1) ... 1272s Selecting previously unselected package libaec0:amd64. 1272s Preparing to unpack .../047-libaec0_1.1.2-1_amd64.deb ... 1272s Unpacking libaec0:amd64 (1.1.2-1) ... 1272s Selecting previously unselected package libblas3:amd64. 1272s Preparing to unpack .../048-libblas3_3.12.0-3_amd64.deb ... 1272s Unpacking libblas3:amd64 (3.12.0-3) ... 1272s Selecting previously unselected package libdeflate0:amd64. 1272s Preparing to unpack .../049-libdeflate0_1.19-1_amd64.deb ... 1272s Unpacking libdeflate0:amd64 (1.19-1) ... 1272s Selecting previously unselected package libgfortran5:amd64. 1272s Preparing to unpack .../050-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1272s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1272s Selecting previously unselected package libgraphite2-3:amd64. 1272s Preparing to unpack .../051-libgraphite2-3_1.3.14-2_amd64.deb ... 1272s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 1272s Selecting previously unselected package libharfbuzz0b:amd64. 1272s Preparing to unpack .../052-libharfbuzz0b_8.3.0-2_amd64.deb ... 1272s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 1272s Selecting previously unselected package libsz2:amd64. 1272s Preparing to unpack .../053-libsz2_1.1.2-1_amd64.deb ... 1272s Unpacking libsz2:amd64 (1.1.2-1) ... 1272s Selecting previously unselected package libhdf5-103-1:amd64. 1272s Preparing to unpack .../054-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 1272s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1272s Selecting previously unselected package libhdf5-hl-100:amd64. 1272s Preparing to unpack .../055-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 1272s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 1272s Selecting previously unselected package libimagequant0:amd64. 1272s Preparing to unpack .../056-libimagequant0_2.18.0-1_amd64.deb ... 1272s Unpacking libimagequant0:amd64 (2.18.0-1) ... 1272s Selecting previously unselected package libjpeg-turbo8:amd64. 1272s Preparing to unpack .../057-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 1272s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 1272s Selecting previously unselected package libjpeg8:amd64. 1272s Preparing to unpack .../058-libjpeg8_8c-2ubuntu11_amd64.deb ... 1272s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 1272s Selecting previously unselected package libjs-jquery. 1272s Preparing to unpack .../059-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1272s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1272s Selecting previously unselected package libjs-jquery-ui. 1272s Preparing to unpack .../060-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1272s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1272s Selecting previously unselected package liblapack3:amd64. 1272s Preparing to unpack .../061-liblapack3_3.12.0-3_amd64.deb ... 1272s Unpacking liblapack3:amd64 (3.12.0-3) ... 1272s Selecting previously unselected package liblbfgsb0:amd64. 1272s Preparing to unpack .../062-liblbfgsb0_3.0+dfsg.4-1_amd64.deb ... 1272s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1) ... 1272s Selecting previously unselected package liblcms2-2:amd64. 1272s Preparing to unpack .../063-liblcms2-2_2.14-2_amd64.deb ... 1272s Unpacking liblcms2-2:amd64 (2.14-2) ... 1272s Selecting previously unselected package liblerc4:amd64. 1272s Preparing to unpack .../064-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 1272s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 1272s Selecting previously unselected package liblzf1:amd64. 1272s Preparing to unpack .../065-liblzf1_3.6-4_amd64.deb ... 1272s Unpacking liblzf1:amd64 (3.6-4) ... 1272s Selecting previously unselected package libqhull-r8.0:amd64. 1272s Preparing to unpack .../066-libqhull-r8.0_2020.2-6_amd64.deb ... 1272s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 1272s Selecting previously unselected package libraqm0:amd64. 1272s Preparing to unpack .../067-libraqm0_0.10.1-1_amd64.deb ... 1272s Unpacking libraqm0:amd64 (0.10.1-1) ... 1272s Selecting previously unselected package libsharpyuv0:amd64. 1272s Preparing to unpack .../068-libsharpyuv0_1.3.2-0.4_amd64.deb ... 1272s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 1272s Selecting previously unselected package libjbig0:amd64. 1272s Preparing to unpack .../069-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 1272s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 1272s Selecting previously unselected package libwebp7:amd64. 1272s Preparing to unpack .../070-libwebp7_1.3.2-0.4_amd64.deb ... 1272s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 1272s Selecting previously unselected package libtiff6:amd64. 1272s Preparing to unpack .../071-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 1272s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 1272s Selecting previously unselected package libwebpdemux2:amd64. 1272s Preparing to unpack .../072-libwebpdemux2_1.3.2-0.4_amd64.deb ... 1272s Unpacking libwebpdemux2:amd64 (1.3.2-0.4) ... 1272s Selecting previously unselected package libwebpmux3:amd64. 1272s Preparing to unpack .../073-libwebpmux3_1.3.2-0.4_amd64.deb ... 1272s Unpacking libwebpmux3:amd64 (1.3.2-0.4) ... 1272s Selecting previously unselected package libxslt1.1:amd64. 1272s Preparing to unpack .../074-libxslt1.1_1.1.35-1_amd64.deb ... 1272s Unpacking libxslt1.1:amd64 (1.1.35-1) ... 1272s Selecting previously unselected package python-matplotlib-data. 1272s Preparing to unpack .../075-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 1272s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 1273s Selecting previously unselected package python3-dateutil. 1273s Preparing to unpack .../076-python3-dateutil_2.8.2-3_all.deb ... 1273s Unpacking python3-dateutil (2.8.2-3) ... 1273s Selecting previously unselected package libopenjp2-7:amd64. 1273s Preparing to unpack .../077-libopenjp2-7_2.5.0-2_amd64.deb ... 1273s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 1273s Selecting previously unselected package python3-pil:amd64. 1273s Preparing to unpack .../078-python3-pil_10.2.0-1_amd64.deb ... 1273s Unpacking python3-pil:amd64 (10.2.0-1) ... 1273s Selecting previously unselected package python3-tk:amd64. 1273s Preparing to unpack .../079-python3-tk_3.11.5-1_amd64.deb ... 1273s Unpacking python3-tk:amd64 (3.11.5-1) ... 1273s Selecting previously unselected package python3-pil.imagetk:amd64. 1273s Preparing to unpack .../080-python3-pil.imagetk_10.2.0-1_amd64.deb ... 1273s Unpacking python3-pil.imagetk:amd64 (10.2.0-1) ... 1273s Selecting previously unselected package python3-numpy. 1273s Preparing to unpack .../081-python3-numpy_1%3a1.24.2-2_amd64.deb ... 1273s Unpacking python3-numpy (1:1.24.2-2) ... 1273s Selecting previously unselected package python3-contourpy. 1273s Preparing to unpack .../082-python3-contourpy_1.0.7-1build2_amd64.deb ... 1273s Unpacking python3-contourpy (1.0.7-1build2) ... 1273s Selecting previously unselected package python3-cycler. 1273s Preparing to unpack .../083-python3-cycler_0.11.0-2_all.deb ... 1273s Unpacking python3-cycler (0.11.0-2) ... 1273s Selecting previously unselected package python3-brotli. 1273s Preparing to unpack .../084-python3-brotli_1.1.0-2_amd64.deb ... 1273s Unpacking python3-brotli (1.1.0-2) ... 1273s Selecting previously unselected package python3-decorator. 1273s Preparing to unpack .../085-python3-decorator_5.1.1-5_all.deb ... 1273s Unpacking python3-decorator (5.1.1-5) ... 1273s Selecting previously unselected package python3-scipy. 1273s Preparing to unpack .../086-python3-scipy_1.11.4-6_amd64.deb ... 1273s Unpacking python3-scipy (1.11.4-6) ... 1274s Selecting previously unselected package python3-ufolib2. 1274s Preparing to unpack .../087-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 1274s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 1274s Selecting previously unselected package python3-mpmath. 1274s Preparing to unpack .../088-python3-mpmath_1.2.1-3_all.deb ... 1274s Unpacking python3-mpmath (1.2.1-3) ... 1274s Selecting previously unselected package python3-sympy. 1274s Preparing to unpack .../089-python3-sympy_1.12-7_all.deb ... 1274s Unpacking python3-sympy (1.12-7) ... 1274s Selecting previously unselected package python3-appdirs. 1274s Preparing to unpack .../090-python3-appdirs_1.4.4-4_all.deb ... 1274s Unpacking python3-appdirs (1.4.4-4) ... 1274s Selecting previously unselected package python3-fs. 1274s Preparing to unpack .../091-python3-fs_2.4.16-3_all.deb ... 1274s Unpacking python3-fs (2.4.16-3) ... 1274s Selecting previously unselected package python3-lxml:amd64. 1274s Preparing to unpack .../092-python3-lxml_5.1.0-1_amd64.deb ... 1274s Unpacking python3-lxml:amd64 (5.1.0-1) ... 1274s Selecting previously unselected package python3-lz4. 1274s Preparing to unpack .../093-python3-lz4_4.0.2+dfsg-1build2_amd64.deb ... 1274s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 1274s Selecting previously unselected package python3-unicodedata2. 1274s Preparing to unpack .../094-python3-unicodedata2_15.1.0+ds-1_amd64.deb ... 1274s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 1274s Selecting previously unselected package unicode-data. 1274s Preparing to unpack .../095-unicode-data_15.1.0-1_all.deb ... 1274s Unpacking unicode-data (15.1.0-1) ... 1274s Selecting previously unselected package python3-fonttools. 1274s Preparing to unpack .../096-python3-fonttools_4.46.0-1_amd64.deb ... 1274s Unpacking python3-fonttools (4.46.0-1) ... 1275s Selecting previously unselected package python3-kiwisolver. 1275s Preparing to unpack .../097-python3-kiwisolver_1.4.4-1build2_amd64.deb ... 1275s Unpacking python3-kiwisolver (1.4.4-1build2) ... 1275s Selecting previously unselected package python3-packaging. 1275s Preparing to unpack .../098-python3-packaging_23.2-1_all.deb ... 1275s Unpacking python3-packaging (23.2-1) ... 1275s Selecting previously unselected package python3-matplotlib. 1275s Preparing to unpack .../099-python3-matplotlib_3.6.3-1ubuntu3_amd64.deb ... 1275s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 1275s Selecting previously unselected package python3-pandas-lib:amd64. 1275s Preparing to unpack .../100-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_amd64.deb ... 1275s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ... 1275s Selecting previously unselected package python3-pandas. 1275s Preparing to unpack .../101-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 1275s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 1276s Selecting previously unselected package python3-seaborn. 1276s Preparing to unpack .../102-python3-seaborn_0.13.2-2_all.deb ... 1276s Unpacking python3-seaborn (0.13.2-2) ... 1276s Selecting previously unselected package python3-h5py-serial. 1276s Preparing to unpack .../103-python3-h5py-serial_3.10.0-1ubuntu1_amd64.deb ... 1276s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 1276s Selecting previously unselected package python3-h5py. 1276s Preparing to unpack .../104-python3-h5py_3.10.0-1ubuntu1_all.deb ... 1276s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 1276s Selecting previously unselected package poretools. 1276s Preparing to unpack .../105-poretools_0.6.0+dfsg-6_all.deb ... 1276s Unpacking poretools (0.6.0+dfsg-6) ... 1276s Selecting previously unselected package poretools-data. 1276s Preparing to unpack .../106-poretools-data_0.6.0+dfsg-6_all.deb ... 1276s Unpacking poretools-data (0.6.0+dfsg-6) ... 1276s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 1276s Setting up liblcms2-2:amd64 (2.14-2) ... 1276s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 1276s Setting up poretools-data (0.6.0+dfsg-6) ... 1276s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 1276s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 1276s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 1276s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 1276s Setting up fonts-lyx (2.4.0~RC3-1) ... 1276s Setting up x11-common (1:7.7+23ubuntu2) ... 1276s Setting up libdeflate0:amd64 (1.19-1) ... 1276s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 1276s Setting up libqhull-r8.0:amd64 (2020.2-6) ... 1276s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 1276s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 1276s Setting up libaec0:amd64 (1.1.2-1) ... 1276s Setting up unicode-data (15.1.0-1) ... 1276s Setting up python3-decorator (5.1.1-5) ... 1276s Setting up libblas3:amd64 (3.12.0-3) ... 1276s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 1277s Setting up python3-packaging (23.2-1) ... 1277s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1277s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 1277s Setting up python3-brotli (1.1.0-2) ... 1277s Setting up liblzf1:amd64 (3.6-4) ... 1277s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up python3-cycler (0.11.0-2) ... 1277s Setting up libimagequant0:amd64 (2.18.0-1) ... 1277s Setting up fonts-dejavu-mono (2.37-8) ... 1277s Setting up python3-kiwisolver (1.4.4-1build2) ... 1277s Setting up libmpc3:amd64 (1.3.1-1) ... 1277s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 1277s Setting up fonts-dejavu-core (2.37-8) ... 1277s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 1277s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up libwebp7:amd64 (1.3.2-0.4) ... 1277s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up libnsl-dev:amd64 (1.3.0-3) ... 1277s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 1277s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up libxslt1.1:amd64 (1.1.35-1) ... 1277s Setting up libopenjp2-7:amd64 (2.5.0-2) ... 1277s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 1277s Setting up python3-dateutil (2.8.2-3) ... 1277s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 1277s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 1277s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1277s Setting up python3-mpmath (1.2.1-3) ... 1278s Setting up libisl23:amd64 (0.26-3) ... 1278s Setting up libc-dev-bin (2.39-0ubuntu2) ... 1278s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 1278s Setting up libwebpmux3:amd64 (1.3.2-0.4) ... 1278s Setting up python3-appdirs (1.4.4-4) ... 1278s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1278s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 1278s Setting up libsz2:amd64 (1.1.2-1) ... 1278s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 1278s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 1278s Setting up python3-sympy (1.12-7) ... 1282s Setting up liblapack3:amd64 (3.12.0-3) ... 1282s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1282s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1282s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 1283s Setting up libwebpdemux2:amd64 (1.3.2-0.4) ... 1283s Setting up python3-fs (2.4.16-3) ... 1283s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1283s Setting up libraqm0:amd64 (0.10.1-1) ... 1283s Setting up python3-numpy (1:1.24.2-2) ... 1285s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1285s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1285s Setting up python3-lxml:amd64 (5.1.0-1) ... 1285s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 1285s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 1285s Setting up python3-contourpy (1.0.7-1build2) ... 1285s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 1285s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1285s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... 1285s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 1285s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1285s Setting up libxft2:amd64 (2.3.6-1) ... 1285s Setting up python3-scipy (1.11.4-6) ... 1287s Setting up cpp-13 (13.2.0-17ubuntu2) ... 1287s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1287s Setting up libtk8.6:amd64 (8.6.13-2) ... 1287s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ... 1287s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 1287s Setting up python3-pil:amd64 (10.2.0-1) ... 1287s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 1291s Setting up python3-h5py (3.10.0-1ubuntu1) ... 1291s Setting up gcc-13 (13.2.0-17ubuntu2) ... 1291s Setting up cpp (4:13.2.0-7ubuntu1) ... 1291s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 1291s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1291s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1291s Setting up blt (2.5.3+dfsg-7) ... 1291s Setting up python3-tk:amd64 (3.11.5-1) ... 1291s Setting up gcc (4:13.2.0-7ubuntu1) ... 1291s Setting up python3-pil.imagetk:amd64 (10.2.0-1) ... 1292s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1292s Setting up g++-13 (13.2.0-17ubuntu2) ... 1292s Setting up g++ (4:13.2.0-7ubuntu1) ... 1292s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1292s Setting up build-essential (12.10ubuntu1) ... 1292s Setting up python3-fonttools (4.46.0-1) ... 1292s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 1292s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 1294s Setting up python3-seaborn (0.13.2-2) ... 1294s Setting up poretools (0.6.0+dfsg-6) ... 1294s Processing triggers for man-db (2.12.0-3) ... 1295s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1298s Reading package lists... 1298s Building dependency tree... 1298s Reading state information... 1298s Starting pkgProblemResolver with broken count: 0 1298s Starting 2 pkgProblemResolver with broken count: 0 1298s Done 1299s The following NEW packages will be installed: 1299s autopkgtest-satdep 1299s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1299s Need to get 0 B/704 B of archives. 1299s After this operation, 0 B of additional disk space will be used. 1299s Get:1 /tmp/autopkgtest.WIadM9/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 1299s Selecting previously unselected package autopkgtest-satdep. 1299s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83476 files and directories currently installed.) 1299s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1299s Unpacking autopkgtest-satdep (0) ... 1299s Setting up autopkgtest-satdep (0) ... 1301s (Reading database ... 83476 files and directories currently installed.) 1301s Removing autopkgtest-satdep (0) ... 1301s autopkgtest [12:25:44]: test run-unit-test: [----------------------- 1301s Test 1 1301s poretools fastq --min-length 5000 test_data/ 1301s PASS 1301s 1301s Test 2 1301s poretools yield_plot \ 1301s --plot-type basepairs \ 1301s --saveas foo.pdf \ 1301s test_data/ 1303s poretools yield_plot \ 1303s --plot-type basepairs \ 1303s --saveas foo.png \ 1303s --theme-bw \ 1304s PASS 1304s 1304s Test 3 1304s poretools winner test_data/ 1305s None 1305s poretools winner --type all test_data/ 1305s None 1305s poretools winner --type 2D test_data/ 1305s None 1305s poretools winner --type fwd,rev test_data/ 1305s None 1305s poretools winner --type best test_data/ 1306s None 1306s PASS 1306s 1306s Test 4 1306s poretools stats test_data/ 1306s WARNING:poretools:No valid sequences observed. 1306s 1306s PASS 1306s 1306s Test 5 1306s poretools hist --num-bins 20 --max-length 10000 test_data/ --saveas pdf 1307s PASS 1307s 1307s Test 6 1307s poretools nucdist test_data/ 1307s PASS 1307s 1307s Test 7 1307s poretools qualdist test_data/ 1308s PASS 1308s 1308s Test 8 1308s poretools qualpos test_data/ 1308s INFO:poreminion:Processing data... 1308s INFO:poreminion:Constructing box plot... 1308s INFO:poreminion:Showing plot... 1308s PASS 1308s 1308s Test 9 1308s poretools tabular test_data/2016_3_4_3507_1_ch120_read418_strand.fast5 1308s length name sequence quals 1308s PASS 1308s 1308s Test 10 1308s poretools events test_data/ | head -5 1309s file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_C p_G p_T raw_index 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 template 47.251591099330355 4763.048472775564 0.9668385781155593 0.004648074369189906 b'TCTGTT' 47.97832776188504 0 0.031943183 b'TCTGTT' 0.031943183 0.30235475 0.25146347 0.12806088 0.31812072 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 template 44.850873046874995 4763.053120849933 0.8472663451499569 0.0033200531208499333 b'CTGTTG' 45.02518621381605 1 0.11112857 b'CTGTTG' 0.11112857 0.00053366355 0.017279929 0.37138563 0.6108006 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 template 48.476037597656244 4763.056440903054 0.7381804847713384 0.0033200531208499333 b'TGTTGT' 48.36242374899137 1 0.10091868 b'ATTTCT' 0.1328778 4.530973e-06 0.0043692193 0.016758446 0.9788677 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 template 53.88568237304687 4763.059760956175 1.065008404644439 0.0033200531208499333 b'TTGTAT' 52.54231332145608 2 0.17415267 b'TTGTAT' 0.17415267 0.0073869717 0.10049193 0.24536704 0.64675397 1309s PASS 1309s 1309s Test 11 1309s poretools events --pre-basecalled test_data/ | head -5 1309s file strand mean start stdv length model_state model_level move p_model_state mp_model_state p_mp_model_state p_A p_C p_G p_T raw_index 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 pre_basecalled 46.998077889901616 14345272 1.0669259594980387 27 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 pre_basecalled 54.33531518554687 14345299 2.034295402300552 10 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 pre_basecalled 42.45211081480368 14345309 0.7340400873517527 39 1309s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 pre_basecalled 51.60119126929306 14345348 1.203026360454715 410 1309s PASS 1309s 1309s Test 12 1309s poretools times test_data/ 1309s channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute 1309s 126 test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 0 1457127309 1457132072 95 1457132167 2016-03-04T22:54:32+0000 04 22 54 1309s 126 test_data/2016_3_4_3507_1_ch126_read501_strand.fast5 0 1457127309 1457131059 110 1457131169 2016-03-04T22:37:39+0000 04 22 37 1309s 13 test_data/2016_3_4_3507_1_ch13_read1130_strand.fast5 0 1457127309 1457137813 46 1457137859 2016-03-05T00:30:13+0000 05 00 30 1309s 120 test_data/2016_3_4_3507_1_ch120_read542_strand.fast5 0 1457127309 1457132498 77 1457132575 2016-03-04T23:01:38+0000 04 23 01 1309s 13 test_data/2016_3_4_3507_1_ch13_read1150_strand.fast5 0 1457127309 1457138371 56 1457138427 2016-03-05T00:39:31+0000 05 00 39 1309s 120 test_data/2016_3_4_3507_1_ch120_read443_strand.fast5 0 1457127309 1457131100 7 1457131107 2016-03-04T22:38:20+0000 04 22 38 1309s 120 test_data/2016_3_4_3507_1_ch120_read89_strand.fast5 0 1457127309 1457127952 12 1457127964 2016-03-04T21:45:52+0000 04 21 45 1309s 126 test_data/2016_3_4_3507_1_ch126_read914_strand.fast5 0 1457127309 1457137430 17 1457137447 2016-03-05T00:23:50+0000 05 00 23 1309s 126 test_data/2016_3_4_3507_1_ch126_read843_strand.fast5 0 1457127309 1457136727 48 1457136775 2016-03-05T00:12:07+0000 05 00 12 1309s 126 test_data/2016_3_4_3507_1_ch126_read217_strand.fast5 0 1457127309 1457128331 70 1457128401 2016-03-04T21:52:11+0000 04 21 52 1309s 126 test_data/2016_3_4_3507_1_ch126_read223_strand.fast5 0 1457127309 1457128649 21 1457128670 2016-03-04T21:57:29+0000 04 21 57 1309s 126 test_data/2016_3_4_3507_1_ch126_read618_strand.fast5 0 1457127309 1457132641 29 1457132670 2016-03-04T23:04:01+0000 04 23 04 1309s 120 test_data/2016_3_4_3507_1_ch120_read521_strand.fast5 0 1457127309 1457132324 40 1457132364 2016-03-04T22:58:44+0000 04 22 58 1309s 52 test_data/COLLES_L160693_20160728_FNFAB23794_MN17350_sequencing_run_E_coli_K12_1D_R9_SpotON_41280_ch52_read58_strand.fast5 0 1469741121 1469741953 45 1469741998 2016-07-28T21:39:13+0000 28 21 39 1309s 126 test_data/2016_3_4_3507_1_ch126_read1387_strand.fast5 0 1457127309 1457148938 19 1457148957 2016-03-05T03:35:38+0000 05 03 35 1309s 126 test_data/2016_3_4_3507_1_ch126_read382_strand.fast5 0 1457127309 1457130139 15 1457130154 2016-03-04T22:22:19+0000 04 22 22 1309s 126 test_data/2016_3_4_3507_1_ch126_read940_strand.fast5 0 1457127309 1457137663 23 1457137686 2016-03-05T00:27:43+0000 05 00 27 1309s 13 test_data/2016_3_4_3507_1_ch13_read1456_strand.fast5 0 1457127309 1457143016 46 1457143062 2016-03-05T01:56:56+0000 05 01 56 1309s 126 test_data/2016_3_4_3507_1_ch126_read833_strand.fast5 0 1457127309 1457136341 50 1457136391 2016-03-05T00:05:41+0000 05 00 05 1309s 126 test_data/2016_3_4_3507_1_ch126_read969_strand.fast5 0 1457127309 1457138004 19 1457138023 2016-03-05T00:33:24+0000 05 00 33 1309s 128 test_data/2016_3_4_3507_1_ch128_read635_strand.fast5 0 1457127309 1457132225 71 1457132296 2016-03-04T22:57:05+0000 04 22 57 1309s 120 test_data/2016_3_4_3507_1_ch120_read433_strand.fast5 0 1457127309 1457130943 72 1457131015 2016-03-04T22:35:43+0000 04 22 35 1309s 120 test_data/2016_3_4_3507_1_ch120_read353_strand.fast5 0 1457127309 1457129863 28 1457129891 2016-03-04T22:17:43+0000 04 22 17 1309s 126 test_data/2016_3_4_3507_1_ch126_read160_strand.fast5 0 1457127309 1457127855 11 1457127866 2016-03-04T21:44:15+0000 04 21 44 1309s 128 test_data/2016_3_4_3507_1_ch128_read790_strand.fast5 0 1457127309 1457134331 52 1457134383 2016-03-04T23:32:11+0000 04 23 32 1309s 126 test_data/2016_3_4_3507_1_ch126_read1169_strand.fast5 0 1457127309 1457140028 30 1457140058 2016-03-05T01:07:08+0000 05 01 07 1309s 128 test_data/2016_3_4_3507_1_ch128_read763_strand.fast5 0 1457127309 1457133850 25 1457133875 2016-03-04T23:24:10+0000 04 23 24 1309s 128 test_data/2016_3_4_3507_1_ch128_read204_strand.fast5 0 1457127309 1457128023 19 1457128042 2016-03-04T21:47:03+0000 04 21 47 1309s 128 test_data/2016_3_4_3507_1_ch128_read422_strand.fast5 0 1457127309 1457129421 35 1457129456 2016-03-04T22:10:21+0000 04 22 10 1309s 128 test_data/2016_3_4_3507_1_ch128_read430_strand.fast5 0 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 1309s 126 test_data/2016_3_4_3507_1_ch126_read899_strand.fast5 0 1457127309 1457137287 20 1457137307 2016-03-05T00:21:27+0000 05 00 21 1309s 128 test_data/2016_3_4_3507_1_ch128_read783_strand.fast5 0 1457127309 1457134205 49 1457134254 2016-03-04T23:30:05+0000 04 23 30 1309s 120 test_data/2016_3_4_3507_1_ch120_read83_strand.fast5 0 1457127309 1457127862 51 1457127913 2016-03-04T21:44:22+0000 04 21 44 1309s 128 test_data/2016_3_4_3507_1_ch128_read723_strand.fast5 0 1457127309 1457133407 47 1457133454 2016-03-04T23:16:47+0000 04 23 16 1309s 126 test_data/2016_3_4_3507_1_ch126_read324_strand.fast5 0 1457127309 1457129690 43 1457129733 2016-03-04T22:14:50+0000 04 22 14 1309s 120 test_data/2016_3_4_3507_1_ch120_read415_strand.fast5 0 1457127309 1457130808 24 1457130832 2016-03-04T22:33:28+0000 04 22 33 1309s 120 test_data/2016_3_4_3507_1_ch120_read240_strand.fast5 0 1457127309 1457128868 47 1457128915 2016-03-04T22:01:08+0000 04 22 01 1309s 120 test_data/2016_3_4_3507_1_ch120_read586_strand.fast5 0 1457127309 1457132971 43 1457133014 2016-03-04T23:09:31+0000 04 23 09 1309s 126 test_data/2016_3_4_3507_1_ch126_read831_strand.fast5 0 1457127309 1457136233 64 1457136297 2016-03-05T00:03:53+0000 05 00 03 1309s 128 test_data/2016_3_4_3507_1_ch128_read361_strand.fast5 0 1457127309 1457128820 50 1457128870 2016-03-04T22:00:20+0000 04 22 00 1309s 13 test_data/2016_3_4_3507_1_ch13_read1404_strand.fast5 0 1457127309 1457141911 44 1457141955 2016-03-05T01:38:31+0000 05 01 38 1309s 126 test_data/2016_3_4_3507_1_ch126_read601_strand.fast5 0 1457127309 1457132558 20 1457132578 2016-03-04T23:02:38+0000 04 23 02 1309s 120 test_data/2016_3_4_3507_1_ch120_read505_strand.fast5 0 1457127309 1457132189 17 1457132206 2016-03-04T22:56:29+0000 04 22 56 1309s 128 test_data/2016_3_4_3507_1_ch128_read503_strand.fast5 0 1457127309 1457130219 92 1457130311 2016-03-04T22:23:39+0000 04 22 23 1309s 128 test_data/2016_3_4_3507_1_ch128_read365_strand.fast5 0 1457127309 1457128915 54 1457128969 2016-03-04T22:01:55+0000 04 22 01 1309s 126 test_data/2016_3_4_3507_1_ch126_read1250_strand.fast5 0 1457127309 1457141826 25 1457141851 2016-03-05T01:37:06+0000 05 01 37 1309s 126 test_data/2016_3_4_3507_1_ch126_read1066_strand.fast5 0 1457127309 1457139171 38 1457139209 2016-03-05T00:52:51+0000 05 00 52 1309s 128 test_data/2016_3_4_3507_1_ch128_read270_strand.fast5 0 1457127309 1457128363 39 1457128402 2016-03-04T21:52:43+0000 04 21 52 1309s 126 test_data/2016_3_4_3507_1_ch126_read1377_strand.fast5 0 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 1309s 13 test_data/2016_3_4_3507_1_ch13_read1132_strand.fast5 0 1457127309 1457137901 79 1457137980 2016-03-05T00:31:41+0000 05 00 31 1309s 120 test_data/2016_3_4_3507_1_ch120_read418_strand.fast5 0 1457127309 1457130851 31 1457130882 2016-03-04T22:34:11+0000 04 22 34 1309s 128 test_data/2016_3_4_3507_1_ch128_read376_strand.fast5 0 1457127309 1457129030 83 1457129113 2016-03-04T22:03:50+0000 04 22 03 1309s 126 test_data/2016_3_4_3507_1_ch126_read326_strand.fast5 0 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16 1309s 128 test_data/2016_3_4_3507_1_ch128_read95_strand.fast5 0 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 1309s 126 test_data/2016_3_4_3507_1_ch126_read743_strand.fast5 0 1457127309 1457134273 56 1457134329 2016-03-04T23:31:13+0000 04 23 31 1309s 120 test_data/2016_3_4_3507_1_ch120_read635_strand.fast5 0 1457127309 1457133473 43 1457133516 2016-03-04T23:17:53+0000 04 23 17 1309s 128 test_data/2016_3_4_3507_1_ch128_read404_strand.fast5 0 1457127309 1457129255 54 1457129309 2016-03-04T22:07:35+0000 04 22 07 1309s 120 test_data/2016_3_4_3507_1_ch120_read706_strand.fast5 0 1457127309 1457134485 41 1457134526 2016-03-04T23:34:45+0000 04 23 34 1309s 128 test_data/2016_3_4_3507_1_ch128_read521_strand.fast5 0 1457127309 1457130585 43 1457130628 2016-03-04T22:29:45+0000 04 22 29 1309s 126 test_data/2016_3_4_3507_1_ch126_read42_strand.fast5 0 1457127309 1457127427 64 1457127491 2016-03-04T21:37:07+0000 04 21 37 1309s 128 test_data/2016_3_4_3507_1_ch128_read647_strand.fast5 0 1457127309 1457132386 20 1457132406 2016-03-04T22:59:46+0000 04 22 59 1309s 13 test_data/2016_3_4_3507_1_ch13_read1414_strand.fast5 0 1457127309 1457142000 23 1457142023 2016-03-05T01:40:00+0000 05 01 40 1309s 126 test_data/2016_3_4_3507_1_ch126_read249_strand.fast5 0 1457127309 1457128880 38 1457128918 2016-03-04T22:01:20+0000 04 22 01 1309s 126 test_data/2016_3_4_3507_1_ch126_read1079_strand.fast5 0 1457127309 1457139272 90 1457139362 2016-03-05T00:54:32+0000 05 00 54 1309s 13 test_data/2016_3_4_3507_1_ch13_read1474_strand.fast5 0 1457127309 1457143353 35 1457143388 2016-03-05T02:02:33+0000 05 02 02 1309s 128 test_data/2016_3_4_3507_1_ch128_read384_strand.fast5 0 1457127309 1457129195 23 1457129218 2016-03-04T22:06:35+0000 04 22 06 1309s 126 test_data/2016_3_4_3507_1_ch126_read700_strand.fast5 0 1457127309 1457133555 64 1457133619 2016-03-04T23:19:15+0000 04 23 19 1309s 128 test_data/2016_3_4_3507_1_ch128_read753_strand.fast5 0 1457127309 1457133727 53 1457133780 2016-03-04T23:22:07+0000 04 23 22 1309s 126 test_data/2016_3_4_3507_1_ch126_read857_strand.fast5 0 1457127309 1457136882 36 1457136918 2016-03-05T00:14:42+0000 05 00 14 1309s PASS 1309s 1309s Test 13 1309s poretools index test_data | head -5 1310s source_filename template_fwd_length complement_rev_length 2d_length asic_id asic_temp heatsink_temp channel exp_start_time exp_start_time_string_date exp_start_time_string_time start_time start_time_string_date start_time_string_time duration fast5_version 1310s test_data/2016_3_4_3507_1_ch126_read562_strand.fast5 None None None 3571011476 30.37 36.99 126 1457127309 2016-Mar-04 (Fri) 21:35:09 1457132072 2016-Mar-04 (Fri) 22:54:32 95 metrichor1.16 1310s test_data/2016_3_4_3507_1_ch126_read501_strand.fast5 None None None 3571011476 30.37 36.99 126 1457127309 2016-Mar-04 (Fri) 21:35:09 1457131059 2016-Mar-04 (Fri) 22:37:39 110 metrichor1.16 1310s test_data/2016_3_4_3507_1_ch13_read1130_strand.fast5 None None None 3571011476 30.37 36.99 13 1457127309 2016-Mar-04 (Fri) 21:35:09 1457137813 2016-Mar-05 (Sat) 00:30:13 46 metrichor1.16 1310s test_data/2016_3_4_3507_1_ch120_read542_strand.fast5 None None None 3571011476 30.37 36.99 120 1457127309 2016-Mar-04 (Fri) 21:35:09 1457132498 2016-Mar-04 (Fri) 23:01:38 77 metrichor1.16 1310s PASS 1310s 1310s autopkgtest [12:25:53]: test run-unit-test: -----------------------] 1310s run-unit-test PASS 1310s autopkgtest [12:25:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1310s autopkgtest [12:25:53]: @@@@@@@@@@@@@@@@@@@@ summary 1310s run-unit-test PASS 1321s Creating nova instance adt-noble-i386-poretools-20240321-120403-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...