0s autopkgtest [12:01:22]: starting date and time: 2024-03-21 12:01:22+0000 0s autopkgtest [12:01:22]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:01:22]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dw57mznl/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:h5py --apt-upgrade picopore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-6.secgroup --name adt-noble-i386-picopore-20240321-120121-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1061s autopkgtest [12:19:03]: testbed dpkg architecture: amd64 1061s autopkgtest [12:19:03]: testbed apt version: 2.7.12 1061s autopkgtest [12:19:03]: test architecture: i386 1061s autopkgtest [12:19:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1062s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1062s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 1062s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 1062s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 1062s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1062s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 1062s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 1062s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 1062s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 1062s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 1062s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 1062s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 1062s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 1062s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 1062s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 1062s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 1062s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 1065s Fetched 11.3 MB in 1s (7947 kB/s) 1065s Reading package lists... 1067s Reading package lists... 1067s Building dependency tree... 1067s Reading state information... 1067s Calculating upgrade... 1068s The following packages will be upgraded: 1068s debianutils linux-firmware 1068s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1068s Need to get 476 MB of archives. 1068s After this operation, 5724 kB of additional disk space will be used. 1068s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 1068s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 1071s Fetched 476 MB in 4s (135 MB/s) 1072s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 1072s Preparing to unpack .../debianutils_5.17_amd64.deb ... 1072s Unpacking debianutils (5.17) over (5.16) ... 1072s Setting up debianutils (5.17) ... 1072s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 1072s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 1072s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 1075s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 1075s Processing triggers for man-db (2.12.0-3) ... 1076s Processing triggers for initramfs-tools (0.142ubuntu20) ... 1076s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 1076s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1084s Reading package lists... 1084s Building dependency tree... 1084s Reading state information... 1085s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1085s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1085s sh: Distribution appears to be Ubuntu 1086s Reading package lists... 1086s Building dependency tree... 1086s Reading state information... 1086s eatmydata is already the newest version (131-1). 1086s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1086s Reading package lists... 1087s Building dependency tree... 1087s Reading state information... 1087s dbus is already the newest version (1.14.10-4ubuntu1). 1087s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1087s Reading package lists... 1087s Building dependency tree... 1087s Reading state information... 1087s rng-tools-debian is already the newest version (2.4). 1087s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1087s Reading package lists... 1088s Building dependency tree... 1088s Reading state information... 1089s The following packages will be REMOVED: 1089s cloud-init* python3-configobj* python3-debconf* 1089s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1089s After this operation, 3252 kB disk space will be freed. 1089s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 1089s Removing cloud-init (24.1.1-0ubuntu1) ... 1089s Removing python3-configobj (5.0.8-3) ... 1089s Removing python3-debconf (1.5.86) ... 1089s Processing triggers for man-db (2.12.0-3) ... 1089s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 1089s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 1090s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1090s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1090s invoke-rc.d: policy-rc.d denied execution of try-restart. 1090s Reading package lists... 1090s Building dependency tree... 1090s Reading state information... 1091s linux-generic is already the newest version (6.8.0-11.11+1). 1091s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1091s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1091s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1091s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1093s Reading package lists... 1093s Reading package lists... 1093s Building dependency tree... 1093s Reading state information... 1093s Calculating upgrade... 1093s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1093s Reading package lists... 1094s Building dependency tree... 1094s Reading state information... 1094s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1094s autopkgtest [12:19:36]: rebooting testbed after setup commands that affected boot 1257s autopkgtest [12:22:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 1258s autopkgtest [12:22:20]: @@@@@@@@@@@@@@@@@@@@ apt-source picopore 1259s Get:1 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (dsc) [2191 B] 1259s Get:2 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (tar) [6276 kB] 1259s Get:3 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (diff) [5332 B] 1259s gpgv: Signature made Fri Dec 15 20:40:34 2023 UTC 1259s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 1259s gpgv: issuer "tille@debian.org" 1259s gpgv: Can't check signature: No public key 1259s dpkg-source: warning: cannot verify inline signature for ./picopore_1.2.0-3.dsc: no acceptable signature found 1259s autopkgtest [12:22:21]: testing package picopore version 1.2.0-3 1260s autopkgtest [12:22:22]: build not needed 1261s autopkgtest [12:22:23]: test run-unit-test: preparing testbed 1263s Note, using file '/tmp/autopkgtest.VDj7b8/1-autopkgtest-satdep.dsc' to get the build dependencies 1263s Reading package lists... 1263s Building dependency tree... 1263s Reading state information... 1263s Starting pkgProblemResolver with broken count: 0 1263s Starting 2 pkgProblemResolver with broken count: 0 1263s Done 1264s The following NEW packages will be installed: 1264s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 1264s g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1264s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools libaec0 libasan8 1264s libatomic1 libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 1264s libgcc-13-dev libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwasan0 1264s libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 1264s liblsan0 liblzf1 libmpc3 libnsl-dev libquadmath0 libstdc++-13-dev libsz2 1264s libtirpc-dev libtsan2 libubsan1 linux-libc-dev picopore python3-all 1264s python3-h5py python3-h5py-serial python3-numpy python3-picopore 1264s python3-watchdog rpcsvc-proto 1264s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. 1264s Need to get 81.3 MB of archives. 1264s After this operation, 316 MB of additional disk space will be used. 1264s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 1264s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1264s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1264s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 1264s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 1264s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1264s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 1264s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1264s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1264s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1264s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1264s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1264s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1264s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1264s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1264s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1264s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1264s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1264s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1264s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1264s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1264s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1264s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1264s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1264s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1264s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1264s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1264s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1264s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1264s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1264s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1264s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1264s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1264s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1264s Get:35 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 1264s Get:36 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 1264s Get:37 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 1264s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-tools amd64 1.10.10+repack-3ubuntu1 [335 kB] 1264s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1264s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1264s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 1264s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1264s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1264s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 1264s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1264s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 1264s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 1264s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB] 1264s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 1264s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-watchdog all 3.0.0-1 [121 kB] 1264s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-picopore all 1.2.0-3 [15.6 kB] 1264s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 picopore all 1.2.0-3 [9878 B] 1264s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 python3-all amd64 3.12.1-0ubuntu2 [906 B] 1265s Fetched 81.3 MB in 1s (143 MB/s) 1265s Selecting previously unselected package libc-dev-bin. 1265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 1265s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 1265s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 1265s Selecting previously unselected package linux-libc-dev:amd64. 1265s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1265s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1265s Selecting previously unselected package libcrypt-dev:amd64. 1265s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1265s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1265s Selecting previously unselected package libtirpc-dev:amd64. 1265s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 1265s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1265s Selecting previously unselected package libnsl-dev:amd64. 1265s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ... 1265s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 1265s Selecting previously unselected package rpcsvc-proto. 1265s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1265s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1265s Selecting previously unselected package libc6-dev:amd64. 1265s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ... 1265s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 1265s Selecting previously unselected package libisl23:amd64. 1265s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ... 1265s Unpacking libisl23:amd64 (0.26-3) ... 1265s Selecting previously unselected package libmpc3:amd64. 1265s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ... 1265s Unpacking libmpc3:amd64 (1.3.1-1) ... 1265s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1265s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1265s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1265s Selecting previously unselected package cpp-13. 1265s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1265s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1265s Selecting previously unselected package cpp-x86-64-linux-gnu. 1265s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1265s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1266s Selecting previously unselected package cpp. 1266s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1266s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1266s Selecting previously unselected package libcc1-0:amd64. 1266s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libgomp1:amd64. 1266s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libitm1:amd64. 1266s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libatomic1:amd64. 1266s Preparing to unpack .../16-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libasan8:amd64. 1266s Preparing to unpack .../17-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package liblsan0:amd64. 1266s Preparing to unpack .../18-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libtsan2:amd64. 1266s Preparing to unpack .../19-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libubsan1:amd64. 1266s Preparing to unpack .../20-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libhwasan0:amd64. 1266s Preparing to unpack .../21-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libquadmath0:amd64. 1266s Preparing to unpack .../22-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 1266s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libgcc-13-dev:amd64. 1266s Preparing to unpack .../23-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1266s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1266s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 1266s Preparing to unpack .../24-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1266s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1266s Selecting previously unselected package gcc-13. 1266s Preparing to unpack .../25-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 1266s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1266s Selecting previously unselected package gcc-x86-64-linux-gnu. 1266s Preparing to unpack .../26-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1266s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1266s Selecting previously unselected package gcc. 1266s Preparing to unpack .../27-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 1266s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1266s Selecting previously unselected package libstdc++-13-dev:amd64. 1266s Preparing to unpack .../28-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1266s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1267s Selecting previously unselected package g++-13-x86-64-linux-gnu. 1267s Preparing to unpack .../29-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1267s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1267s Selecting previously unselected package g++-13. 1267s Preparing to unpack .../30-g++-13_13.2.0-17ubuntu2_amd64.deb ... 1267s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1267s Selecting previously unselected package g++-x86-64-linux-gnu. 1267s Preparing to unpack .../31-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1267s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1267s Selecting previously unselected package g++. 1267s Preparing to unpack .../32-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 1267s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1267s Selecting previously unselected package build-essential. 1267s Preparing to unpack .../33-build-essential_12.10ubuntu1_amd64.deb ... 1267s Unpacking build-essential (12.10ubuntu1) ... 1267s Selecting previously unselected package libaec0:amd64. 1267s Preparing to unpack .../34-libaec0_1.1.2-1_amd64.deb ... 1267s Unpacking libaec0:amd64 (1.1.2-1) ... 1267s Selecting previously unselected package libsz2:amd64. 1267s Preparing to unpack .../35-libsz2_1.1.2-1_amd64.deb ... 1267s Unpacking libsz2:amd64 (1.1.2-1) ... 1267s Selecting previously unselected package libhdf5-103-1:amd64. 1267s Preparing to unpack .../36-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 1267s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1267s Selecting previously unselected package hdf5-tools. 1267s Preparing to unpack .../37-hdf5-tools_1.10.10+repack-3ubuntu1_amd64.deb ... 1267s Unpacking hdf5-tools (1.10.10+repack-3ubuntu1) ... 1267s Selecting previously unselected package libblas3:amd64. 1267s Preparing to unpack .../38-libblas3_3.12.0-3_amd64.deb ... 1267s Unpacking libblas3:amd64 (3.12.0-3) ... 1267s Selecting previously unselected package libgfortran5:amd64. 1267s Preparing to unpack .../39-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1267s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1267s Selecting previously unselected package libhdf5-hl-100:amd64. 1267s Preparing to unpack .../40-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 1267s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 1267s Selecting previously unselected package libjs-jquery. 1267s Preparing to unpack .../41-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1267s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1267s Selecting previously unselected package libjs-underscore. 1267s Preparing to unpack .../42-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 1267s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1267s Selecting previously unselected package libjs-sphinxdoc. 1267s Preparing to unpack .../43-libjs-sphinxdoc_7.2.6-4_all.deb ... 1267s Unpacking libjs-sphinxdoc (7.2.6-4) ... 1267s Selecting previously unselected package liblapack3:amd64. 1267s Preparing to unpack .../44-liblapack3_3.12.0-3_amd64.deb ... 1267s Unpacking liblapack3:amd64 (3.12.0-3) ... 1267s Selecting previously unselected package liblzf1:amd64. 1267s Preparing to unpack .../45-liblzf1_3.6-4_amd64.deb ... 1267s Unpacking liblzf1:amd64 (3.6-4) ... 1267s Selecting previously unselected package python3-numpy. 1267s Preparing to unpack .../46-python3-numpy_1%3a1.24.2-2_amd64.deb ... 1267s Unpacking python3-numpy (1:1.24.2-2) ... 1268s Selecting previously unselected package python3-h5py-serial. 1268s Preparing to unpack .../47-python3-h5py-serial_3.10.0-1ubuntu1_amd64.deb ... 1268s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 1268s Selecting previously unselected package python3-h5py. 1268s Preparing to unpack .../48-python3-h5py_3.10.0-1ubuntu1_all.deb ... 1268s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 1268s Selecting previously unselected package python3-watchdog. 1268s Preparing to unpack .../49-python3-watchdog_3.0.0-1_all.deb ... 1268s Unpacking python3-watchdog (3.0.0-1) ... 1268s Selecting previously unselected package python3-picopore. 1268s Preparing to unpack .../50-python3-picopore_1.2.0-3_all.deb ... 1268s Unpacking python3-picopore (1.2.0-3) ... 1268s Selecting previously unselected package picopore. 1268s Preparing to unpack .../51-picopore_1.2.0-3_all.deb ... 1268s Unpacking picopore (1.2.0-3) ... 1268s Selecting previously unselected package python3-all. 1268s Preparing to unpack .../52-python3-all_3.12.1-0ubuntu2_amd64.deb ... 1268s Unpacking python3-all (3.12.1-0ubuntu2) ... 1268s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 1268s Setting up python3-all (3.12.1-0ubuntu2) ... 1268s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libaec0:amd64 (1.1.2-1) ... 1268s Setting up libblas3:amd64 (3.12.0-3) ... 1268s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 1268s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1268s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 1268s Setting up liblzf1:amd64 (3.6-4) ... 1268s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libmpc3:amd64 (1.3.1-1) ... 1268s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libnsl-dev:amd64 (1.3.0-3) ... 1268s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 1268s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1268s Setting up libisl23:amd64 (0.26-3) ... 1268s Setting up libc-dev-bin (2.39-0ubuntu2) ... 1268s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libsz2:amd64 (1.1.2-1) ... 1268s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 1268s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1268s Setting up liblapack3:amd64 (3.12.0-3) ... 1268s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1268s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1268s Setting up python3-numpy (1:1.24.2-2) ... 1269s Setting up libjs-sphinxdoc (7.2.6-4) ... 1269s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1269s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1269s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 1269s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1269s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 1269s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1269s Setting up cpp-13 (13.2.0-17ubuntu2) ... 1269s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1269s Setting up python3-watchdog (3.0.0-1) ... 1270s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 1270s Setting up hdf5-tools (1.10.10+repack-3ubuntu1) ... 1270s Setting up python3-h5py (3.10.0-1ubuntu1) ... 1270s Setting up gcc-13 (13.2.0-17ubuntu2) ... 1270s Setting up cpp (4:13.2.0-7ubuntu1) ... 1270s Setting up python3-picopore (1.2.0-3) ... 1270s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1270s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1270s Setting up picopore (1.2.0-3) ... 1270s Setting up gcc (4:13.2.0-7ubuntu1) ... 1270s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1270s Setting up g++-13 (13.2.0-17ubuntu2) ... 1270s Setting up g++ (4:13.2.0-7ubuntu1) ... 1270s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1270s Setting up build-essential (12.10ubuntu1) ... 1270s Processing triggers for man-db (2.12.0-3) ... 1271s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1279s Reading package lists... 1279s Building dependency tree... 1279s Reading state information... 1279s Starting pkgProblemResolver with broken count: 0 1279s Starting 2 pkgProblemResolver with broken count: 0 1279s Done 1280s The following NEW packages will be installed: 1280s autopkgtest-satdep 1280s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1280s Need to get 0 B/696 B of archives. 1280s After this operation, 0 B of additional disk space will be used. 1280s Get:1 /tmp/autopkgtest.VDj7b8/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1280s Selecting previously unselected package autopkgtest-satdep. 1280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75814 files and directories currently installed.) 1280s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1280s Unpacking autopkgtest-satdep (0) ... 1280s Setting up autopkgtest-satdep (0) ... 1281s (Reading database ... 75814 files and directories currently installed.) 1281s Removing autopkgtest-satdep (0) ... 1282s autopkgtest [12:22:44]: test run-unit-test: [----------------------- 1282s Performing lossless compression on 1 files... 1282s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 1282s .Complete. 1282s Original size: 673522 1282s Compressed size: 673522 1282s Performing lossless decompression on 1 files... 1282s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 1282s .Complete. 1282s Compressed size: 673522 1282s Reverted size: 1347044 1282s Checking equivalence of /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 1282s Complete with 0 errors. 1283s Performing lossless compression on 1 files... 1283s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 1283s .Complete. 1283s Original size: 673522 1283s Compressed size: 673522 1283s Performing deep lossless compression on 1 files... 1283s .Complete. 1283s Original size: 673522 1283s Compressed size: 629000 1283s Performing deep lossless decompression on 1 files... 1283s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 1283s .Complete. 1283s Compressed size: 629000 1283s Reverted size: 1276128 1283s Checking equivalence of /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 1283s Complete with 0 errors. 1283s Performing deep lossless compression on 1 files... 1283s .Complete. 1283s Original size: 673522 1283s Compressed size: 629000 1284s Performing raw compression with FASTQ and summary on 1 files... 1284s .Complete. 1284s Original size: 673522 1284s Compressed size: 119182 1284s Performing raw compression with summary and no FASTQ on 1 files... 1284s .Complete. 1284s Original size: 673522 1284s Compressed size: 103635 1284s Performing raw compression with FASTQ and no summary on 1 files... 1284s .Complete. 1284s Original size: 673522 1284s Compressed size: 116766 1284s Performing raw compression with no summary and no FASTQ on 1 files... 1284s .Complete. 1284s Original size: 673522 1284s Compressed size: 98915 1284s Performing raw compression with manual keyword Analyses on 1 files... 1284s .Complete. 1284s Original size: 673522 1284s Compressed size: 98915 1285s Performing lossless compression on 1 files... 1285s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 1285s .Complete. 1285s Original size: 2003942 1285s Compressed size: 2003942 1285s Performing lossless decompression on 1 files... 1285s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 1285s .Complete. 1285s Compressed size: 2003942 1285s Reverted size: 4007884 1285s Checking equivalence of /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 1285s Complete with 0 errors. 1285s Performing lossless compression on 1 files... 1285s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 1285s .Complete. 1285s Original size: 2003942 1285s Compressed size: 2003942 1285s Performing deep lossless compression on 1 files... 1285s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 1285s .Complete. 1285s Original size: 2003942 1285s Compressed size: 2003942 1285s Performing deep lossless decompression on 1 files... 1285s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 1285s .Complete. 1285s Compressed size: 2003942 1285s Reverted size: 4007884 1285s Checking equivalence of /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 1286s Complete with 0 errors. 1286s Performing deep lossless compression on 1 files... 1286s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 1286s .Complete. 1286s Original size: 2003942 1286s Compressed size: 2003942 1286s Performing raw compression with FASTQ and summary on 1 files... 1286s .Complete. 1286s Original size: 2003942 1286s Compressed size: 270517 1286s Performing raw compression with summary and no FASTQ on 1 files... 1286s .Complete. 1286s Original size: 2003942 1286s Compressed size: 232978 1286s Performing raw compression with FASTQ and no summary on 1 files... 1286s .Complete. 1286s Original size: 2003942 1286s Compressed size: 261197 1287s Performing raw compression with no summary and no FASTQ on 1 files... 1287s .Complete. 1287s Original size: 2003942 1287s Compressed size: 219602 1287s Performing raw compression with manual keyword Analyses on 1 files... 1287s .Complete. 1287s Original size: 2003942 1287s Compressed size: 219602 1287s Performing real time lossless compression... 1287s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1287s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1297s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime/albacore_1d_original.fast5 1307s .ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 1317s . 1317s Exiting Picopore. 1317s Processing in-progress files. Press Ctrl-C again to abort. 1317s Complete. 1317s Original size: 1066738 1317s Compressed size: 2677464 1317s Performing real time deep lossless compression... 1317s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1317s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1337s .ERROR: Unable to open file (truncated file: eof = 1654784, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 1347s . 1347s Exiting Picopore. 1347s Processing in-progress files. Press Ctrl-C again to abort. 1347s Complete. 1347s Original size: 2004722 1347s Compressed size: 2632942 1348s Performing real time raw compression with FASTQ and summary... 1348s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1348s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1367s .ERROR: Unable to open file (truncated file: eof = 495616, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 1378s . 1378s Exiting Picopore. 1378s Processing in-progress files. Press Ctrl-C again to abort. 1378s Complete. 1378s Original size: 890610 1378s Compressed size: 1057166 1378s Performing real time raw compression with summary and no FASTQ... 1378s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1378s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1398s .ERROR: Unable to open file (truncated file: eof = 1454080, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 1408s . 1408s Exiting Picopore. 1408s Processing in-progress files. Press Ctrl-C again to abort. 1408s Complete. 1408s Original size: 1844978 1408s Compressed size: 2107577 1408s Performing real time raw compression with FASTQ and no summary... 1408s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1408s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1428s .ERROR: Unable to open file (truncated file: eof = 1941504, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 1438s . 1438s Exiting Picopore. 1438s Processing in-progress files. Press Ctrl-C again to abort. 1438s Complete. 1438s Original size: 2377458 1438s Compressed size: 2120708 1439s Performing real time raw compression with no summary and no FASTQ... 1439s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1439s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1469s .. 1469s Exiting Picopore. 1469s Processing in-progress files. Press Ctrl-C again to abort. 1469s Complete. 1469s Original size: 2677464 1469s Compressed size: 318517 1469s Performing real time raw compression with manual keyword Analyses... 1469s Monitoring /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 1469s No files found under /tmp/autopkgtest.VDj7b8/autopkgtest_tmp/realtime 1499s .. 1499s Exiting Picopore. 1499s Processing in-progress files. Press Ctrl-C again to abort. 1499s Complete. 1499s Original size: 2677464 1499s Compressed size: 318517 1499s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/albacore_1d_original.fast5 1499s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/metrichor_2d_original.fast5 1499s python3 -m picopore -y --realtime --print-every 1 --mode lossless realtime 1499s python3 -m picopore -y --realtime --print-every 1 --mode deep-lossless realtime 1499s python3 -m picopore -y --realtime --print-every 1 --fastq --summary --mode raw realtime 1499s python3 -m picopore -y --realtime --print-every 1 --summary --no-fastq --mode raw realtime 1499s python3 -m picopore -y --realtime --print-every 1 --fastq --no-summary --mode raw realtime 1499s python3 -m picopore -y --realtime --print-every 1 --no-fastq --no-summary --mode raw realtime 1499s python3 -m picopore -y --realtime --print-every 1 --manual Analyses --mode raw realtime 1499s PASS 1499s autopkgtest [12:26:21]: test run-unit-test: -----------------------] 1500s autopkgtest [12:26:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1500s run-unit-test PASS 1500s autopkgtest [12:26:22]: test autodep8-python3: preparing testbed 1944s autopkgtest [12:33:46]: testbed dpkg architecture: amd64 1944s autopkgtest [12:33:46]: testbed apt version: 2.7.12 1945s autopkgtest [12:33:47]: test architecture: i386 1945s autopkgtest [12:33:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1945s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1945s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 1945s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 1945s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB] 1945s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 1945s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB] 1945s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB] 1945s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 1945s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 1945s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 1945s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 1945s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 1945s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB] 1945s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 1945s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 1945s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 1945s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 1949s Fetched 11.3 MB in 2s (7204 kB/s) 1949s Reading package lists... 1950s Reading package lists... 1951s Building dependency tree... 1951s Reading state information... 1951s Calculating upgrade... 1951s The following packages will be upgraded: 1951s debianutils linux-firmware 1951s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1951s Need to get 476 MB of archives. 1951s After this operation, 5724 kB of additional disk space will be used. 1951s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB] 1951s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB] 1956s Fetched 476 MB in 4s (120 MB/s) 1956s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 1956s Preparing to unpack .../debianutils_5.17_amd64.deb ... 1956s Unpacking debianutils (5.17) over (5.16) ... 1956s Setting up debianutils (5.17) ... 1956s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 1956s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ... 1956s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ... 1959s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ... 1959s Processing triggers for man-db (2.12.0-3) ... 1960s Processing triggers for initramfs-tools (0.142ubuntu20) ... 1960s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 1960s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1968s Reading package lists... 1968s Building dependency tree... 1968s Reading state information... 1968s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1969s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1969s Reading package lists...sh: Distribution appears to be Ubuntu 1970s 1970s Building dependency tree... 1970s Reading state information... 1970s eatmydata is already the newest version (131-1). 1970s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1970s Reading package lists... 1970s Building dependency tree... 1970s Reading state information... 1971s dbus is already the newest version (1.14.10-4ubuntu1). 1971s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1971s Reading package lists... 1971s Building dependency tree... 1971s Reading state information... 1971s rng-tools-debian is already the newest version (2.4). 1971s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1971s Reading package lists... 1971s Building dependency tree... 1971s Reading state information... 1972s The following packages will be REMOVED: 1972s cloud-init* python3-configobj* python3-debconf* 1972s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1972s After this operation, 3252 kB disk space will be freed. 1972s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 1972s Removing cloud-init (24.1.1-0ubuntu1) ... 1972s Removing python3-configobj (5.0.8-3) ... 1973s Removing python3-debconf (1.5.86) ... 1973s Processing triggers for man-db (2.12.0-3) ... 1973s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 1973s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 1974s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1974s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1974s invoke-rc.d: policy-rc.d denied execution of try-restart. 1974s Reading package lists... 1974s Building dependency tree... 1974s Reading state information... 1974s linux-generic is already the newest version (6.8.0-11.11+1). 1974s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1974s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1974s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1974s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1976s Reading package lists... 1977s Reading package lists... 1977s Building dependency tree... 1977s Reading state information... 1977s Calculating upgrade... 1977s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1977s Reading package lists... 1978s Building dependency tree... 1978s Reading state information... 1978s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1978s autopkgtest [12:34:20]: rebooting testbed after setup commands that affected boot 2009s Note, using file '/tmp/autopkgtest.VDj7b8/3-autopkgtest-satdep.dsc' to get the build dependencies 2009s Reading package lists... 2010s Building dependency tree... 2010s Reading state information... 2010s Starting pkgProblemResolver with broken count: 0 2010s Starting 2 pkgProblemResolver with broken count: 0 2010s Done 2010s The following NEW packages will be installed: 2010s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 2010s g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 2010s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools libaec0 libasan8 2010s libatomic1 libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 2010s libgcc-13-dev libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwasan0 2010s libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 2010s liblsan0 liblzf1 libmpc3 libnsl-dev libquadmath0 libstdc++-13-dev libsz2 2010s libtirpc-dev libtsan2 libubsan1 linux-libc-dev python3-all python3-h5py 2010s python3-h5py-serial python3-numpy python3-picopore python3-watchdog 2010s rpcsvc-proto 2010s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 2010s Need to get 81.3 MB of archives. 2010s After this operation, 316 MB of additional disk space will be used. 2010s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 2010s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 2010s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 2010s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 2010s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 2010s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 2010s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 2010s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 2010s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 2010s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 2010s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 2010s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 2010s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 2010s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 2010s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 2010s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 2010s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 2010s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 2011s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 2011s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 2011s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 2011s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 2011s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 2011s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 2011s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 2011s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 2011s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 2011s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 2011s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 2011s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 2011s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 2011s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 2011s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 2011s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 2011s Get:35 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 2011s Get:36 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 2011s Get:37 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 2011s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-tools amd64 1.10.10+repack-3ubuntu1 [335 kB] 2011s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 2011s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 2011s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 2011s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 2011s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 2011s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 2011s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 2011s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 2011s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 python3-all amd64 3.12.1-0ubuntu2 [906 B] 2011s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 2011s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB] 2011s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 2011s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-watchdog all 3.0.0-1 [121 kB] 2011s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-picopore all 1.2.0-3 [15.6 kB] 2011s Fetched 81.3 MB in 1s (128 MB/s) 2011s Selecting previously unselected package libc-dev-bin. 2011s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 2011s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 2011s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 2012s Selecting previously unselected package linux-libc-dev:amd64. 2012s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 2012s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 2012s Selecting previously unselected package libcrypt-dev:amd64. 2012s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 2012s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 2012s Selecting previously unselected package libtirpc-dev:amd64. 2012s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 2012s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 2012s Selecting previously unselected package libnsl-dev:amd64. 2012s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ... 2012s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 2012s Selecting previously unselected package rpcsvc-proto. 2012s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 2012s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 2012s Selecting previously unselected package libc6-dev:amd64. 2012s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ... 2012s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 2012s Selecting previously unselected package libisl23:amd64. 2012s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ... 2012s Unpacking libisl23:amd64 (0.26-3) ... 2012s Selecting previously unselected package libmpc3:amd64. 2012s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ... 2012s Unpacking libmpc3:amd64 (1.3.1-1) ... 2012s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 2012s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 2012s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 2012s Selecting previously unselected package cpp-13. 2012s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 2012s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 2012s Selecting previously unselected package cpp-x86-64-linux-gnu. 2012s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 2012s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 2012s Selecting previously unselected package cpp. 2012s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 2012s Unpacking cpp (4:13.2.0-7ubuntu1) ... 2012s Selecting previously unselected package libcc1-0:amd64. 2012s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 2012s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 2012s Selecting previously unselected package libgomp1:amd64. 2012s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 2012s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 2012s Selecting previously unselected package libitm1:amd64. 2012s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_amd64.deb ... 2012s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 2012s Selecting previously unselected package libatomic1:amd64. 2012s Preparing to unpack .../16-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 2012s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 2012s Selecting previously unselected package libasan8:amd64. 2012s Preparing to unpack .../17-libasan8_14-20240303-1ubuntu1_amd64.deb ... 2012s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 2013s Selecting previously unselected package liblsan0:amd64. 2013s Preparing to unpack .../18-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 2013s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 2013s Selecting previously unselected package libtsan2:amd64. 2013s Preparing to unpack .../19-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 2013s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 2013s Selecting previously unselected package libubsan1:amd64. 2013s Preparing to unpack .../20-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 2013s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 2013s Selecting previously unselected package libhwasan0:amd64. 2013s Preparing to unpack .../21-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 2013s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 2013s Selecting previously unselected package libquadmath0:amd64. 2013s Preparing to unpack .../22-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 2013s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 2013s Selecting previously unselected package libgcc-13-dev:amd64. 2013s Preparing to unpack .../23-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 2013s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 2013s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 2013s Preparing to unpack .../24-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 2013s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 2013s Selecting previously unselected package gcc-13. 2013s Preparing to unpack .../25-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 2013s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 2013s Selecting previously unselected package gcc-x86-64-linux-gnu. 2013s Preparing to unpack .../26-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 2013s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 2013s Selecting previously unselected package gcc. 2013s Preparing to unpack .../27-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 2013s Unpacking gcc (4:13.2.0-7ubuntu1) ... 2013s Selecting previously unselected package libstdc++-13-dev:amd64. 2013s Preparing to unpack .../28-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 2013s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 2013s Selecting previously unselected package g++-13-x86-64-linux-gnu. 2013s Preparing to unpack .../29-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 2013s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 2014s Selecting previously unselected package g++-13. 2014s Preparing to unpack .../30-g++-13_13.2.0-17ubuntu2_amd64.deb ... 2014s Unpacking g++-13 (13.2.0-17ubuntu2) ... 2014s Selecting previously unselected package g++-x86-64-linux-gnu. 2014s Preparing to unpack .../31-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 2014s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 2014s Selecting previously unselected package g++. 2014s Preparing to unpack .../32-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 2014s Unpacking g++ (4:13.2.0-7ubuntu1) ... 2014s Selecting previously unselected package build-essential. 2014s Preparing to unpack .../33-build-essential_12.10ubuntu1_amd64.deb ... 2014s Unpacking build-essential (12.10ubuntu1) ... 2014s Selecting previously unselected package libaec0:amd64. 2014s Preparing to unpack .../34-libaec0_1.1.2-1_amd64.deb ... 2014s Unpacking libaec0:amd64 (1.1.2-1) ... 2014s Selecting previously unselected package libsz2:amd64. 2014s Preparing to unpack .../35-libsz2_1.1.2-1_amd64.deb ... 2014s Unpacking libsz2:amd64 (1.1.2-1) ... 2014s Selecting previously unselected package libhdf5-103-1:amd64. 2014s Preparing to unpack .../36-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 2014s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 2014s Selecting previously unselected package hdf5-tools. 2014s Preparing to unpack .../37-hdf5-tools_1.10.10+repack-3ubuntu1_amd64.deb ... 2014s Unpacking hdf5-tools (1.10.10+repack-3ubuntu1) ... 2014s Selecting previously unselected package libblas3:amd64. 2014s Preparing to unpack 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2015s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 2015s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 2015s Setting up liblzf1:amd64 (3.6-4) ... 2015s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libmpc3:amd64 (1.3.1-1) ... 2015s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libnsl-dev:amd64 (1.3.0-3) ... 2015s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 2015s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 2015s Setting up libisl23:amd64 (0.26-3) ... 2015s Setting up libc-dev-bin (2.39-0ubuntu2) ... 2015s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libsz2:amd64 (1.1.2-1) ... 2015s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 2015s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 2015s Setting up liblapack3:amd64 (3.12.0-3) ... 2015s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 2015s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 2015s Setting up python3-numpy (1:1.24.2-2) ... 2016s Setting up libjs-sphinxdoc (7.2.6-4) ... 2016s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 2016s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 2016s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 2016s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 2016s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 2016s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 2016s Setting up cpp-13 (13.2.0-17ubuntu2) ... 2016s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 2016s Setting up python3-watchdog (3.0.0-1) ... 2017s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 2017s Setting up hdf5-tools (1.10.10+repack-3ubuntu1) ... 2017s Setting up python3-h5py (3.10.0-1ubuntu1) ... 2017s Setting up gcc-13 (13.2.0-17ubuntu2) ... 2017s Setting up cpp (4:13.2.0-7ubuntu1) ... 2017s Setting up python3-picopore (1.2.0-3) ... 2017s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 2017s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 2017s Setting up gcc (4:13.2.0-7ubuntu1) ... 2017s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 2017s Setting up g++-13 (13.2.0-17ubuntu2) ... 2017s Setting up g++ (4:13.2.0-7ubuntu1) ... 2017s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 2017s Setting up build-essential (12.10ubuntu1) ... 2017s Processing triggers for man-db (2.12.0-3) ... 2018s Processing triggers for libc-bin (2.39-0ubuntu2) ... 2023s Reading package lists... 2023s Building dependency tree... 2023s Reading state information... 2024s Starting pkgProblemResolver with broken count: 0 2024s Starting 2 pkgProblemResolver with broken count: 0 2024s Done 2024s The following NEW packages will be installed: 2024s autopkgtest-satdep 2024s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 2024s Need to get 0 B/704 B of archives. 2024s After this operation, 0 B of additional disk space will be used. 2024s Get:1 /tmp/autopkgtest.VDj7b8/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 2024s Selecting previously unselected package autopkgtest-satdep. 2024s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75802 files and directories currently installed.) 2024s Preparing to unpack .../4-autopkgtest-satdep.deb ... 2024s Unpacking autopkgtest-satdep (0) ... 2024s Setting up autopkgtest-satdep (0) ... 2025s autopkgtest: WARNING: package python3-picopore:i386 is not installed though it should be 2026s (Reading database ... 75802 files and directories currently installed.) 2026s Removing autopkgtest-satdep (0) ... 2026s autopkgtest [12:35:08]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import picopore; print(picopore)" ; done 2026s autopkgtest [12:35:08]: test autodep8-python3: [----------------------- 2027s Testing with python3.12: 2027s 2027s autopkgtest [12:35:09]: test autodep8-python3: -----------------------] 2027s autodep8-python3 PASS (superficial) 2027s autopkgtest [12:35:09]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 2027s autopkgtest [12:35:09]: @@@@@@@@@@@@@@@@@@@@ summary 2027s run-unit-test PASS 2027s autodep8-python3 PASS (superficial) 2037s Creating nova instance adt-noble-i386-picopore-20240321-120121-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)... 2037s Creating nova instance adt-noble-i386-picopore-20240321-120121-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...