0s autopkgtest [05:25:18]: starting date and time: 2024-03-21 05:25:18+0000 0s autopkgtest [05:25:18]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [05:25:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yhy4t669/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:hdf5 --apt-upgrade picopore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=hdf5/1.10.10+repack-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-63.secgroup --name adt-noble-i386-picopore-20240321-052518-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 450s autopkgtest [05:32:48]: testbed dpkg architecture: amd64 451s autopkgtest [05:32:49]: testbed apt version: 2.7.12 451s autopkgtest [05:32:49]: test architecture: i386 451s autopkgtest [05:32:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 451s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 451s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 451s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 451s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 451s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3816 kB] 451s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [704 kB] 451s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 451s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 451s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [36.6 kB] 451s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 451s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 451s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 451s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4233 kB] 451s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 451s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 451s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 451s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 455s Fetched 11.3 MB in 1s (8019 kB/s) 455s Reading package lists... 457s Reading package lists... 457s Building dependency tree... 457s Reading state information... 457s Calculating upgrade... 457s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 457s Reading package lists... 458s Building dependency tree... 458s Reading state information... 458s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 459s sh: Attempting to set up Debian/Ubuntu apt sources automatically 459s sh: Distribution appears to be Ubuntu 459s Reading package lists... 460s Building dependency tree... 460s Reading state information... 460s eatmydata is already the newest version (131-1). 460s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 460s Reading package lists... 460s Building dependency tree... 460s Reading state information... 461s dbus is already the newest version (1.14.10-4ubuntu1). 461s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 461s Reading package lists... 461s Building dependency tree... 461s Reading state information... 462s rng-tools-debian is already the newest version (2.4). 462s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 462s Reading package lists... 462s Building dependency tree... 462s Reading state information... 462s The following packages will be REMOVED: 462s cloud-init* python3-configobj* python3-debconf* 462s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 462s After this operation, 3252 kB disk space will be freed. 463s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 463s Removing cloud-init (24.1.1-0ubuntu1) ... 463s Removing python3-configobj (5.0.8-3) ... 463s Removing python3-debconf (1.5.86) ... 463s Processing triggers for man-db (2.12.0-3) ... 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71414 files and directories currently installed.) 464s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 465s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 465s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 465s invoke-rc.d: policy-rc.d denied execution of try-restart. 465s Reading package lists... 465s Building dependency tree... 465s Reading state information... 466s linux-generic is already the newest version (6.8.0-11.11+1). 466s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 466s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 466s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 466s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 468s Reading package lists... 468s Reading package lists... 468s Building dependency tree... 468s Reading state information... 468s Calculating upgrade... 469s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 469s Reading package lists... 469s Building dependency tree... 469s Reading state information... 469s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 469s autopkgtest [05:33:07]: rebooting testbed after setup commands that affected boot 494s autopkgtest [05:33:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 494s autopkgtest [05:33:32]: @@@@@@@@@@@@@@@@@@@@ apt-source picopore 496s Get:1 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (dsc) [2191 B] 496s Get:2 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (tar) [6276 kB] 496s Get:3 http://ftpmaster.internal/ubuntu noble/universe picopore 1.2.0-3 (diff) [5332 B] 496s gpgv: Signature made Fri Dec 15 20:40:34 2023 UTC 496s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 496s gpgv: issuer "tille@debian.org" 496s gpgv: Can't check signature: No public key 496s dpkg-source: warning: cannot verify inline signature for ./picopore_1.2.0-3.dsc: no acceptable signature found 496s autopkgtest [05:33:34]: testing package picopore version 1.2.0-3 496s autopkgtest [05:33:34]: build not needed 496s autopkgtest [05:33:34]: test run-unit-test: preparing testbed 498s Note, using file '/tmp/autopkgtest.Q3ymTg/1-autopkgtest-satdep.dsc' to get the build dependencies 498s Reading package lists... 498s Building dependency tree... 498s Reading state information... 499s Starting pkgProblemResolver with broken count: 0 499s Starting 2 pkgProblemResolver with broken count: 0 499s Done 499s The following NEW packages will be installed: 499s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 499s g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 499s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools libaec0 libasan8 499s libatomic1 libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 499s libgcc-13-dev libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwasan0 499s libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 499s liblsan0 liblzf1 libmpc3 libnsl-dev libquadmath0 libstdc++-13-dev libsz2 499s libtirpc-dev libtsan2 libubsan1 linux-libc-dev picopore python3-all 499s python3-h5py python3-h5py-serial python3-numpy python3-picopore 499s python3-watchdog rpcsvc-proto 499s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. 499s Need to get 81.3 MB of archives. 499s After this operation, 316 MB of additional disk space will be used. 499s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 499s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 499s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 499s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 499s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 499s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 499s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 499s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 499s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 499s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 499s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 499s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 499s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 499s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 499s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 499s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 499s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 499s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 499s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 499s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 499s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 499s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 499s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 499s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 499s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 500s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 500s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 500s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 500s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 500s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 500s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 500s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 500s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 500s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 500s Get:35 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 500s Get:36 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 500s Get:37 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 500s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-tools amd64 1.10.10+repack-3ubuntu1 [335 kB] 500s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 500s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 500s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 500s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 500s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 500s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 500s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 500s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 500s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 500s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB] 500s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 500s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-watchdog all 3.0.0-1 [121 kB] 500s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-picopore all 1.2.0-3 [15.6 kB] 500s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 picopore all 1.2.0-3 [9878 B] 500s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 python3-all amd64 3.12.1-0ubuntu2 [906 B] 500s Fetched 81.3 MB in 1s (134 MB/s) 500s Selecting previously unselected package libc-dev-bin. 500s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71359 files and directories currently installed.) 500s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 500s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 500s Selecting previously unselected package linux-libc-dev:amd64. 500s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 500s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 500s Selecting previously unselected package libcrypt-dev:amd64. 500s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 500s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 501s Selecting previously unselected package libtirpc-dev:amd64. 501s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 501s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 501s Selecting previously unselected package libnsl-dev:amd64. 501s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ... 501s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 501s Selecting previously unselected package rpcsvc-proto. 501s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 501s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 501s Selecting previously unselected package libc6-dev:amd64. 501s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ... 501s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 501s Selecting previously unselected package libisl23:amd64. 501s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ... 501s Unpacking libisl23:amd64 (0.26-3) ... 501s Selecting previously unselected package libmpc3:amd64. 501s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ... 501s Unpacking libmpc3:amd64 (1.3.1-1) ... 501s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 501s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 501s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 501s Selecting previously unselected package cpp-13. 501s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 501s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 501s Selecting previously unselected package cpp-x86-64-linux-gnu. 501s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 501s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 501s Selecting previously unselected package cpp. 501s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 501s Unpacking cpp (4:13.2.0-7ubuntu1) ... 501s Selecting previously unselected package libcc1-0:amd64. 501s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libgomp1:amd64. 501s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libitm1:amd64. 501s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libatomic1:amd64. 501s Preparing to unpack .../16-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libasan8:amd64. 501s Preparing to unpack .../17-libasan8_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package liblsan0:amd64. 501s Preparing to unpack .../18-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libtsan2:amd64. 501s Preparing to unpack .../19-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libubsan1:amd64. 501s Preparing to unpack .../20-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libhwasan0:amd64. 501s Preparing to unpack .../21-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 501s Selecting previously unselected package libquadmath0:amd64. 501s Preparing to unpack .../22-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 501s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 502s Selecting previously unselected package libgcc-13-dev:amd64. 502s Preparing to unpack .../23-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 502s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 502s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 502s Preparing to unpack .../24-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 502s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 502s Selecting previously unselected package gcc-13. 502s Preparing to unpack .../25-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 502s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 502s Selecting previously unselected package gcc-x86-64-linux-gnu. 502s Preparing to unpack .../26-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 502s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 502s Selecting previously unselected package gcc. 502s Preparing to unpack .../27-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 502s Unpacking gcc (4:13.2.0-7ubuntu1) ... 502s Selecting previously unselected package libstdc++-13-dev:amd64. 502s Preparing to unpack .../28-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 502s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 502s Selecting previously unselected package g++-13-x86-64-linux-gnu. 502s Preparing to unpack .../29-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 502s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 503s Selecting previously unselected package g++-13. 503s Preparing to unpack .../30-g++-13_13.2.0-17ubuntu2_amd64.deb ... 503s Unpacking g++-13 (13.2.0-17ubuntu2) ... 503s Selecting previously unselected package g++-x86-64-linux-gnu. 503s Preparing to unpack .../31-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 503s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 503s Selecting previously unselected package g++. 503s Preparing to unpack .../32-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 503s Unpacking g++ (4:13.2.0-7ubuntu1) ... 503s Selecting previously unselected package build-essential. 503s Preparing to unpack .../33-build-essential_12.10ubuntu1_amd64.deb ... 503s Unpacking build-essential (12.10ubuntu1) ... 503s Selecting previously unselected package libaec0:amd64. 503s Preparing to unpack .../34-libaec0_1.1.2-1_amd64.deb ... 503s Unpacking libaec0:amd64 (1.1.2-1) ... 503s Selecting previously unselected package libsz2:amd64. 503s Preparing to unpack .../35-libsz2_1.1.2-1_amd64.deb ... 503s Unpacking libsz2:amd64 (1.1.2-1) ... 503s Selecting previously unselected package libhdf5-103-1:amd64. 503s Preparing to unpack .../36-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 503s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 503s Selecting previously unselected package hdf5-tools. 503s Preparing to unpack .../37-hdf5-tools_1.10.10+repack-3ubuntu1_amd64.deb ... 503s Unpacking hdf5-tools (1.10.10+repack-3ubuntu1) ... 503s Selecting previously unselected package libblas3:amd64. 503s Preparing to unpack .../38-libblas3_3.12.0-3_amd64.deb ... 503s Unpacking libblas3:amd64 (3.12.0-3) ... 503s Selecting previously unselected package libgfortran5:amd64. 503s Preparing to unpack .../39-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 503s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 503s Selecting previously unselected package libhdf5-hl-100:amd64. 503s Preparing to unpack .../40-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 503s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 503s Selecting previously unselected package libjs-jquery. 503s Preparing to unpack .../41-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 503s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 503s Selecting previously unselected package libjs-underscore. 503s Preparing to unpack .../42-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 503s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 503s Selecting previously unselected package libjs-sphinxdoc. 503s Preparing to unpack .../43-libjs-sphinxdoc_7.2.6-4_all.deb ... 503s Unpacking libjs-sphinxdoc (7.2.6-4) ... 503s Selecting previously unselected package liblapack3:amd64. 503s Preparing to unpack .../44-liblapack3_3.12.0-3_amd64.deb ... 503s Unpacking liblapack3:amd64 (3.12.0-3) ... 503s Selecting previously unselected package liblzf1:amd64. 503s Preparing to unpack .../45-liblzf1_3.6-4_amd64.deb ... 503s Unpacking liblzf1:amd64 (3.6-4) ... 503s Selecting previously unselected package python3-numpy. 503s Preparing to unpack .../46-python3-numpy_1%3a1.24.2-2_amd64.deb ... 503s Unpacking python3-numpy (1:1.24.2-2) ... 503s Selecting previously unselected package python3-h5py-serial. 503s Preparing to unpack .../47-python3-h5py-serial_3.10.0-1ubuntu1_amd64.deb ... 503s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 503s Selecting previously unselected package python3-h5py. 503s Preparing to unpack .../48-python3-h5py_3.10.0-1ubuntu1_all.deb ... 503s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 503s Selecting previously unselected package python3-watchdog. 503s Preparing to unpack .../49-python3-watchdog_3.0.0-1_all.deb ... 503s Unpacking python3-watchdog (3.0.0-1) ... 503s Selecting previously unselected package python3-picopore. 503s Preparing to unpack .../50-python3-picopore_1.2.0-3_all.deb ... 503s Unpacking python3-picopore (1.2.0-3) ... 503s Selecting previously unselected package picopore. 503s Preparing to unpack .../51-picopore_1.2.0-3_all.deb ... 503s Unpacking picopore (1.2.0-3) ... 504s Selecting previously unselected package python3-all. 504s Preparing to unpack .../52-python3-all_3.12.1-0ubuntu2_amd64.deb ... 504s Unpacking python3-all (3.12.1-0ubuntu2) ... 504s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 504s Setting up python3-all (3.12.1-0ubuntu2) ... 504s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libaec0:amd64 (1.1.2-1) ... 504s Setting up libblas3:amd64 (3.12.0-3) ... 504s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 504s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 504s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 504s Setting up liblzf1:amd64 (3.6-4) ... 504s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libmpc3:amd64 (1.3.1-1) ... 504s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libnsl-dev:amd64 (1.3.0-3) ... 504s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 504s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 504s Setting up libisl23:amd64 (0.26-3) ... 504s Setting up libc-dev-bin (2.39-0ubuntu2) ... 504s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 504s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libsz2:amd64 (1.1.2-1) ... 504s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 504s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 504s Setting up liblapack3:amd64 (3.12.0-3) ... 504s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 504s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 504s Setting up python3-numpy (1:1.24.2-2) ... 505s Setting up libjs-sphinxdoc (7.2.6-4) ... 505s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 505s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 505s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 505s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 505s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 505s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 505s Setting up cpp-13 (13.2.0-17ubuntu2) ... 505s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 505s Setting up python3-watchdog (3.0.0-1) ... 505s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 505s Setting up hdf5-tools (1.10.10+repack-3ubuntu1) ... 505s Setting up python3-h5py (3.10.0-1ubuntu1) ... 506s Setting up gcc-13 (13.2.0-17ubuntu2) ... 506s Setting up cpp (4:13.2.0-7ubuntu1) ... 506s Setting up python3-picopore (1.2.0-3) ... 506s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 506s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 506s Setting up picopore (1.2.0-3) ... 506s Setting up gcc (4:13.2.0-7ubuntu1) ... 506s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 506s Setting up g++-13 (13.2.0-17ubuntu2) ... 506s Setting up g++ (4:13.2.0-7ubuntu1) ... 506s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 506s Setting up build-essential (12.10ubuntu1) ... 506s Processing triggers for man-db (2.12.0-3) ... 507s Processing triggers for libc-bin (2.39-0ubuntu2) ... 507s Reading package lists... 508s Building dependency tree... 508s Reading state information... 508s Starting pkgProblemResolver with broken count: 0 508s Starting 2 pkgProblemResolver with broken count: 0 508s Done 508s The following NEW packages will be installed: 508s autopkgtest-satdep 508s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 508s Need to get 0 B/700 B of archives. 508s After this operation, 0 B of additional disk space will be used. 508s Get:1 /tmp/autopkgtest.Q3ymTg/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 509s Selecting previously unselected package autopkgtest-satdep. 509s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75752 files and directories currently installed.) 509s Preparing to unpack .../2-autopkgtest-satdep.deb ... 509s Unpacking autopkgtest-satdep (0) ... 509s Setting up autopkgtest-satdep (0) ... 510s (Reading database ... 75752 files and directories currently installed.) 510s Removing autopkgtest-satdep (0) ... 510s autopkgtest [05:33:48]: test run-unit-test: [----------------------- 511s Performing lossless compression on 1 files... 511s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 511s .Complete. 511s Original size: 673522 511s Compressed size: 673522 511s Performing lossless decompression on 1 files... 511s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 511s .Complete. 511s Compressed size: 673522 511s Reverted size: 1347044 511s Checking equivalence of /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 511s Complete with 0 errors. 511s Performing lossless compression on 1 files... 511s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 511s .Complete. 511s Original size: 673522 511s Compressed size: 673522 511s Performing deep lossless compression on 1 files... 511s .Complete. 511s Original size: 673522 511s Compressed size: 629000 511s Performing deep lossless decompression on 1 files... 511s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 511s .Complete. 511s Compressed size: 629000 511s Reverted size: 1276128 511s Checking equivalence of /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 511s Complete with 0 errors. 512s Performing deep lossless compression on 1 files... 512s .Complete. 512s Original size: 673522 512s Compressed size: 629000 512s Performing raw compression with FASTQ and summary on 1 files... 512s .Complete. 512s Original size: 673522 512s Compressed size: 119182 512s Performing raw compression with summary and no FASTQ on 1 files... 512s .Complete. 512s Original size: 673522 512s Compressed size: 103635 512s Performing raw compression with FASTQ and no summary on 1 files... 513s .Complete. 513s Original size: 673522 513s Compressed size: 116766 513s Performing raw compression with no summary and no FASTQ on 1 files... 513s .Complete. 513s Original size: 673522 513s Compressed size: 98915 513s Performing raw compression with manual keyword Analyses on 1 files... 513s .Complete. 513s Original size: 673522 513s Compressed size: 98915 513s Performing lossless compression on 1 files... 513s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 513s .Complete. 513s Original size: 2003942 513s Compressed size: 2003942 513s Performing lossless decompression on 1 files... 513s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 513s .Complete. 513s Compressed size: 2003942 513s Reverted size: 4007884 513s Checking equivalence of /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 514s Complete with 0 errors. 514s Performing lossless compression on 1 files... 514s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 514s .Complete. 514s Original size: 2003942 514s Compressed size: 2003942 514s Performing deep lossless compression on 1 files... 514s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 514s .Complete. 514s Original size: 2003942 514s Compressed size: 2003942 514s Performing deep lossless decompression on 1 files... 514s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 514s .Complete. 514s Compressed size: 2003942 514s Reverted size: 4007884 514s Checking equivalence of /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 514s Complete with 0 errors. 514s Performing deep lossless compression on 1 files... 514s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 514s .Complete. 514s Original size: 2003942 514s Compressed size: 2003942 515s Performing raw compression with FASTQ and summary on 1 files... 515s .Complete. 515s Original size: 2003942 515s Compressed size: 270517 515s Performing raw compression with summary and no FASTQ on 1 files... 515s .Complete. 515s Original size: 2003942 515s Compressed size: 232978 515s Performing raw compression with FASTQ and no summary on 1 files... 515s .Complete. 515s Original size: 2003942 515s Compressed size: 261197 515s Performing raw compression with no summary and no FASTQ on 1 files... 516s .Complete. 516s Original size: 2003942 516s Compressed size: 219602 516s Performing raw compression with manual keyword Analyses on 1 files... 516s .Complete. 516s Original size: 2003942 516s Compressed size: 219602 516s Performing real time lossless compression... 516s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 516s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 526s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime/albacore_1d_original.fast5 536s .ERROR: Unable to open file (truncated file: eof = 798720, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 546s . 546s Exiting Picopore. 546s Processing in-progress files. Press Ctrl-C again to abort. 546s Complete. 546s Original size: 1001202 546s Compressed size: 2492146 547s Performing real time deep lossless compression... 547s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 547s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 566s .ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 577s . 577s Exiting Picopore. 577s Processing in-progress files. Press Ctrl-C again to abort. 577s Complete. 577s Original size: 2677464 577s Compressed size: 2632942 577s Performing real time raw compression with FASTQ and summary... 577s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 577s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 597s .ERROR: Unable to open file (truncated file: eof = 610304, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 607s . 607s Exiting Picopore. 607s Processing in-progress files. Press Ctrl-C again to abort. 607s Complete. 607s Original size: 673522 607s Compressed size: 1290638 607s Performing real time raw compression with summary and no FASTQ... 607s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 607s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 637s .. 637s Exiting Picopore. 637s Processing in-progress files. Press Ctrl-C again to abort. 637s Complete. 637s Original size: 2677464 637s Compressed size: 336613 638s Performing real time raw compression with FASTQ and no summary... 638s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 638s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 668s .. 668s Exiting Picopore. 668s Processing in-progress files. Press Ctrl-C again to abort. 668s Complete. 668s Original size: 2660082 668s Compressed size: 377963 668s Performing real time raw compression with no summary and no FASTQ... 668s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 668s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 688s .ERROR: Unable to open file (truncated file: eof = 1925120, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 698s . 698s Exiting Picopore. 698s Processing in-progress files. Press Ctrl-C again to abort. 698s Complete. 698s Original size: 2352882 698s Compressed size: 2102857 698s Performing real time raw compression with manual keyword Analyses... 698s Monitoring /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 698s No files found under /tmp/autopkgtest.Q3ymTg/autopkgtest_tmp/realtime 728s .. 728s Exiting Picopore. 728s Processing in-progress files. Press Ctrl-C again to abort. 728s Complete. 728s Original size: 2677464 728s Compressed size: 318517 728s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/albacore_1d_original.fast5 728s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/metrichor_2d_original.fast5 728s python3 -m picopore -y --realtime --print-every 1 --mode lossless realtime 728s python3 -m picopore -y --realtime --print-every 1 --mode deep-lossless realtime 728s python3 -m picopore -y --realtime --print-every 1 --fastq --summary --mode raw realtime 728s python3 -m picopore -y --realtime --print-every 1 --summary --no-fastq --mode raw realtime 728s python3 -m picopore -y --realtime --print-every 1 --fastq --no-summary --mode raw realtime 728s python3 -m picopore -y --realtime --print-every 1 --no-fastq --no-summary --mode raw realtime 728s python3 -m picopore -y --realtime --print-every 1 --manual Analyses --mode raw realtime 728s PASS 729s autopkgtest [05:37:27]: test run-unit-test: -----------------------] 729s run-unit-test PASS 729s autopkgtest [05:37:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 729s autopkgtest [05:37:27]: test autodep8-python3: preparing testbed 856s autopkgtest [05:39:34]: testbed dpkg architecture: amd64 856s autopkgtest [05:39:34]: testbed apt version: 2.7.12 856s autopkgtest [05:39:34]: test architecture: i386 856s autopkgtest [05:39:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 857s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 857s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 857s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3816 kB] 857s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 857s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 857s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [704 kB] 857s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 857s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 857s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 857s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [36.6 kB] 857s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 857s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 857s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4233 kB] 857s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 857s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 857s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 857s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 860s Fetched 11.3 MB in 1s (8015 kB/s) 860s Reading package lists... 862s Reading package lists... 862s Building dependency tree... 862s Reading state information... 862s Calculating upgrade... 862s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 862s Reading package lists... 863s Building dependency tree... 863s Reading state information... 863s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 863s sh: Attempting to set up Debian/Ubuntu apt sources automatically 863s sh: Distribution appears to be Ubuntu 864s Reading package lists... 864s Building dependency tree... 864s Reading state information... 865s eatmydata is already the newest version (131-1). 865s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 865s Reading package lists... 865s Building dependency tree... 865s Reading state information... 865s dbus is already the newest version (1.14.10-4ubuntu1). 865s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 865s Reading package lists... 866s Building dependency tree... 866s Reading state information... 866s rng-tools-debian is already the newest version (2.4). 866s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 866s Reading package lists... 866s Building dependency tree... 866s Reading state information... 866s The following packages will be REMOVED: 866s cloud-init* python3-configobj* python3-debconf* 867s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 867s After this operation, 3252 kB disk space will be freed. 867s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 867s Removing cloud-init (24.1.1-0ubuntu1) ... 867s Removing python3-configobj (5.0.8-3) ... 868s Removing python3-debconf (1.5.86) ... 868s Processing triggers for man-db (2.12.0-3) ... 868s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71414 files and directories currently installed.) 868s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 869s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 869s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 869s invoke-rc.d: policy-rc.d denied execution of try-restart. 869s Reading package lists... 869s Building dependency tree... 869s Reading state information... 870s linux-generic is already the newest version (6.8.0-11.11+1). 870s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 870s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 870s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 870s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 872s Reading package lists... 872s Reading package lists... 872s Building dependency tree... 872s Reading state information... 872s Calculating upgrade... 873s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 873s Reading package lists... 873s Building dependency tree... 873s Reading state information... 873s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 873s autopkgtest [05:39:51]: rebooting testbed after setup commands that affected boot 1025s Note, using file '/tmp/autopkgtest.Q3ymTg/3-autopkgtest-satdep.dsc' to get the build dependencies 1025s Reading package lists... 1025s Building dependency tree... 1025s Reading state information... 1025s Starting pkgProblemResolver with broken count: 0 1025s Starting 2 pkgProblemResolver with broken count: 0 1025s Done 1026s The following NEW packages will be installed: 1026s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 1026s g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 1026s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools libaec0 libasan8 1026s libatomic1 libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 1026s libgcc-13-dev libgfortran5 libgomp1 libhdf5-103-1 libhdf5-hl-100 libhwasan0 1026s libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 1026s liblsan0 liblzf1 libmpc3 libnsl-dev libquadmath0 libstdc++-13-dev libsz2 1026s libtirpc-dev libtsan2 libubsan1 linux-libc-dev python3-all python3-h5py 1026s python3-h5py-serial python3-numpy python3-picopore python3-watchdog 1026s rpcsvc-proto 1026s 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. 1026s Need to get 81.3 MB of archives. 1026s After this operation, 316 MB of additional disk space will be used. 1026s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 1026s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 1026s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 1026s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 1026s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 1026s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 1026s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 1026s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 1026s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 1026s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 1026s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 1026s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 1026s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 1026s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 1026s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 1026s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 1026s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 1026s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 1026s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 1026s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 1026s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 1026s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 1026s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 1026s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 1026s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 1026s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 1026s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 1026s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 1026s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 1026s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 1026s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 1026s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 1026s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 1026s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1026s Get:35 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 1026s Get:36 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 1026s Get:37 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 1026s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-tools amd64 1.10.10+repack-3ubuntu1 [335 kB] 1026s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 1026s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 1026s Get:41 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 1026s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1026s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1026s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-sphinxdoc all 7.2.6-4 [149 kB] 1026s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 1026s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 1026s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 python3-all amd64 3.12.1-0ubuntu2 [906 B] 1026s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 1026s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB] 1026s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B] 1026s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-watchdog all 3.0.0-1 [121 kB] 1026s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-picopore all 1.2.0-3 [15.6 kB] 1027s Fetched 81.3 MB in 1s (125 MB/s) 1027s Selecting previously unselected package libc-dev-bin. 1027s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71359 files and directories currently installed.) 1027s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 1027s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 1027s Selecting previously unselected package linux-libc-dev:amd64. 1027s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 1027s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 1027s Selecting previously unselected package libcrypt-dev:amd64. 1027s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 1027s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 1027s Selecting previously unselected package libtirpc-dev:amd64. 1027s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 1027s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1027s Selecting previously unselected package libnsl-dev:amd64. 1027s Preparing to unpack .../04-libnsl-dev_1.3.0-3_amd64.deb ... 1027s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 1027s Selecting previously unselected package rpcsvc-proto. 1027s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 1027s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1027s Selecting previously unselected package libc6-dev:amd64. 1027s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_amd64.deb ... 1027s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 1027s Selecting previously unselected package libisl23:amd64. 1028s Preparing to unpack .../07-libisl23_0.26-3_amd64.deb ... 1028s Unpacking libisl23:amd64 (0.26-3) ... 1028s Selecting previously unselected package libmpc3:amd64. 1028s Preparing to unpack .../08-libmpc3_1.3.1-1_amd64.deb ... 1028s Unpacking libmpc3:amd64 (1.3.1-1) ... 1028s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 1028s Preparing to unpack .../09-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1028s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1028s Selecting previously unselected package cpp-13. 1028s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 1028s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1028s Selecting previously unselected package cpp-x86-64-linux-gnu. 1028s Preparing to unpack .../11-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1028s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1028s Selecting previously unselected package cpp. 1028s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 1028s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1028s Selecting previously unselected package libcc1-0:amd64. 1028s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libgomp1:amd64. 1028s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libitm1:amd64. 1028s Preparing to unpack .../15-libitm1_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libatomic1:amd64. 1028s Preparing to unpack .../16-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libasan8:amd64. 1028s Preparing to unpack .../17-libasan8_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package liblsan0:amd64. 1028s Preparing to unpack .../18-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libtsan2:amd64. 1028s Preparing to unpack .../19-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libubsan1:amd64. 1028s Preparing to unpack .../20-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libhwasan0:amd64. 1028s Preparing to unpack .../21-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libquadmath0:amd64. 1028s Preparing to unpack .../22-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 1028s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1028s Selecting previously unselected package libgcc-13-dev:amd64. 1028s Preparing to unpack .../23-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1028s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1028s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 1028s Preparing to unpack .../24-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1028s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1029s Selecting previously unselected package gcc-13. 1029s Preparing to unpack .../25-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 1029s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1029s Selecting previously unselected package gcc-x86-64-linux-gnu. 1029s Preparing to unpack .../26-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1029s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1029s Selecting previously unselected package gcc. 1029s Preparing to unpack .../27-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 1029s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1029s Selecting previously unselected package libstdc++-13-dev:amd64. 1029s Preparing to unpack .../28-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 1029s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1029s Selecting previously unselected package g++-13-x86-64-linux-gnu. 1029s Preparing to unpack .../29-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 1029s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1029s Selecting previously unselected package g++-13. 1029s Preparing to unpack .../30-g++-13_13.2.0-17ubuntu2_amd64.deb ... 1029s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1029s Selecting previously unselected package g++-x86-64-linux-gnu. 1029s Preparing to unpack .../31-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 1029s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1029s Selecting previously unselected package g++. 1029s Preparing to unpack .../32-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 1029s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1029s Selecting previously unselected package build-essential. 1029s Preparing to unpack .../33-build-essential_12.10ubuntu1_amd64.deb ... 1029s Unpacking build-essential (12.10ubuntu1) ... 1029s Selecting previously unselected package libaec0:amd64. 1029s Preparing to unpack .../34-libaec0_1.1.2-1_amd64.deb ... 1029s Unpacking libaec0:amd64 (1.1.2-1) ... 1029s Selecting previously unselected package libsz2:amd64. 1029s Preparing to unpack .../35-libsz2_1.1.2-1_amd64.deb ... 1029s Unpacking libsz2:amd64 (1.1.2-1) ... 1029s Selecting previously unselected package libhdf5-103-1:amd64. 1029s Preparing to unpack .../36-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 1029s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1029s Selecting previously unselected package hdf5-tools. 1029s Preparing to unpack .../37-hdf5-tools_1.10.10+repack-3ubuntu1_amd64.deb ... 1029s Unpacking hdf5-tools (1.10.10+repack-3ubuntu1) ... 1029s Selecting previously unselected package libblas3:amd64. 1029s Preparing to unpack .../38-libblas3_3.12.0-3_amd64.deb ... 1029s Unpacking libblas3:amd64 (3.12.0-3) ... 1029s Selecting previously unselected package libgfortran5:amd64. 1029s Preparing to unpack .../39-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 1029s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1029s Selecting previously unselected package libhdf5-hl-100:amd64. 1029s Preparing to unpack .../40-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 1029s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 1030s Selecting previously unselected package libjs-jquery. 1030s Preparing to unpack .../41-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1030s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1030s Selecting previously unselected package libjs-underscore. 1030s Preparing to unpack .../42-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 1030s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1030s Selecting previously unselected package libjs-sphinxdoc. 1030s Preparing to unpack .../43-libjs-sphinxdoc_7.2.6-4_all.deb ... 1030s Unpacking libjs-sphinxdoc (7.2.6-4) ... 1030s Selecting previously unselected package liblapack3:amd64. 1030s Preparing to unpack .../44-liblapack3_3.12.0-3_amd64.deb ... 1030s Unpacking liblapack3:amd64 (3.12.0-3) ... 1030s Selecting previously unselected package liblzf1:amd64. 1030s Preparing to unpack .../45-liblzf1_3.6-4_amd64.deb ... 1030s Unpacking liblzf1:amd64 (3.6-4) ... 1030s Selecting previously unselected package python3-all. 1030s Preparing to unpack .../46-python3-all_3.12.1-0ubuntu2_amd64.deb ... 1030s Unpacking python3-all (3.12.1-0ubuntu2) ... 1030s Selecting previously unselected package python3-numpy. 1030s Preparing to unpack .../47-python3-numpy_1%3a1.24.2-2_amd64.deb ... 1030s Unpacking python3-numpy (1:1.24.2-2) ... 1030s Selecting previously unselected package python3-h5py-serial. 1030s Preparing to unpack .../48-python3-h5py-serial_3.10.0-1ubuntu1_amd64.deb ... 1030s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 1030s Selecting previously unselected package python3-h5py. 1030s Preparing to unpack .../49-python3-h5py_3.10.0-1ubuntu1_all.deb ... 1030s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 1030s Selecting previously unselected package python3-watchdog. 1030s Preparing to unpack .../50-python3-watchdog_3.0.0-1_all.deb ... 1030s Unpacking python3-watchdog (3.0.0-1) ... 1030s Selecting previously unselected package python3-picopore. 1030s Preparing to unpack .../51-python3-picopore_1.2.0-3_all.deb ... 1030s Unpacking python3-picopore (1.2.0-3) ... 1030s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 1030s Setting up python3-all (3.12.1-0ubuntu2) ... 1030s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libaec0:amd64 (1.1.2-1) ... 1030s Setting up libblas3:amd64 (3.12.0-3) ... 1030s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 1030s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 1030s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 1030s Setting up liblzf1:amd64 (3.6-4) ... 1030s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libmpc3:amd64 (1.3.1-1) ... 1030s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libnsl-dev:amd64 (1.3.0-3) ... 1030s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 1030s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1030s Setting up libisl23:amd64 (0.26-3) ... 1030s Setting up libc-dev-bin (2.39-0ubuntu2) ... 1030s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libsz2:amd64 (1.1.2-1) ... 1030s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 1030s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1030s Setting up liblapack3:amd64 (3.12.0-3) ... 1030s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1030s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1030s Setting up python3-numpy (1:1.24.2-2) ... 1032s Setting up libjs-sphinxdoc (7.2.6-4) ... 1032s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 1032s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 1032s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 1032s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 1032s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 1032s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1032s Setting up cpp-13 (13.2.0-17ubuntu2) ... 1032s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1032s Setting up python3-watchdog (3.0.0-1) ... 1032s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 1033s Setting up hdf5-tools (1.10.10+repack-3ubuntu1) ... 1033s Setting up python3-h5py (3.10.0-1ubuntu1) ... 1033s Setting up gcc-13 (13.2.0-17ubuntu2) ... 1033s Setting up cpp (4:13.2.0-7ubuntu1) ... 1033s Setting up python3-picopore (1.2.0-3) ... 1033s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 1033s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1033s Setting up gcc (4:13.2.0-7ubuntu1) ... 1033s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 1033s Setting up g++-13 (13.2.0-17ubuntu2) ... 1033s Setting up g++ (4:13.2.0-7ubuntu1) ... 1033s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1033s Setting up build-essential (12.10ubuntu1) ... 1033s Processing triggers for man-db (2.12.0-3) ... 1034s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1037s Reading package lists... 1037s Building dependency tree... 1037s Reading state information... 1037s Starting pkgProblemResolver with broken count: 0 1038s Starting 2 pkgProblemResolver with broken count: 0 1038s Done 1038s The following NEW packages will be installed: 1038s autopkgtest-satdep 1038s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1038s Need to get 0 B/696 B of archives. 1038s After this operation, 0 B of additional disk space will be used. 1038s Get:1 /tmp/autopkgtest.Q3ymTg/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 1038s Selecting previously unselected package autopkgtest-satdep. 1038s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75740 files and directories currently installed.) 1038s Preparing to unpack .../4-autopkgtest-satdep.deb ... 1038s Unpacking autopkgtest-satdep (0) ... 1038s Setting up autopkgtest-satdep (0) ... 1039s autopkgtest: WARNING: package python3-picopore:i386 is not installed though it should be 1040s (Reading database ... 75740 files and directories currently installed.) 1040s Removing autopkgtest-satdep (0) ... 1041s autopkgtest [05:42:39]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import picopore; print(picopore)" ; done 1041s autopkgtest [05:42:39]: test autodep8-python3: [----------------------- 1041s Testing with python3.12: 1041s 1041s autopkgtest [05:42:39]: test autodep8-python3: -----------------------] 1041s autopkgtest [05:42:39]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 1041s autodep8-python3 PASS (superficial) 1042s autopkgtest [05:42:40]: @@@@@@@@@@@@@@@@@@@@ summary 1042s run-unit-test PASS 1042s autodep8-python3 PASS (superficial) 1058s Creating nova instance adt-noble-i386-picopore-20240321-052518-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)... 1058s Creating nova instance adt-noble-i386-picopore-20240321-052518-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...