0s autopkgtest [05:14:08]: starting date and time: 2024-03-21 05:14:08+0000 0s autopkgtest [05:14:08]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [05:14:08]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hxjcpy9a/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:hdf5 --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=hdf5/1.10.10+repack-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-48.secgroup --name adt-noble-i386-nanook-20240321-051408-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 130s autopkgtest [05:16:18]: testbed dpkg architecture: amd64 130s autopkgtest [05:16:18]: testbed apt version: 2.7.12 131s autopkgtest [05:16:19]: test architecture: i386 131s autopkgtest [05:16:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 131s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 131s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 131s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 131s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3816 kB] 131s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [704 kB] 131s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [459 kB] 131s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 131s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [36.6 kB] 131s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 131s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 131s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4233 kB] 131s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB] 131s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 131s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 131s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 131s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 134s Fetched 11.3 MB in 1s (7790 kB/s) 135s Reading package lists... 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Calculating upgrade... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s sh: Attempting to set up Debian/Ubuntu apt sources automatically 139s sh: Distribution appears to be Ubuntu 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s eatmydata is already the newest version (131-1). 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s dbus is already the newest version (1.14.10-4ubuntu1). 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s rng-tools-debian is already the newest version (2.4). 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s The following packages will be REMOVED: 142s cloud-init* python3-configobj* python3-debconf* 143s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 143s After this operation, 3252 kB disk space will be freed. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71803 files and directories currently installed.) 143s Removing cloud-init (24.1.1-0ubuntu1) ... 144s Removing python3-configobj (5.0.8-3) ... 144s Removing python3-debconf (1.5.86) ... 144s Processing triggers for man-db (2.12.0-3) ... 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71414 files and directories currently installed.) 144s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 145s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 145s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 145s invoke-rc.d: policy-rc.d denied execution of try-restart. 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 146s linux-generic is already the newest version (6.8.0-11.11+1). 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 146s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 146s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 148s Reading package lists... 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Calculating upgrade... 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s autopkgtest [05:16:38]: rebooting testbed after setup commands that affected boot 305s autopkgtest [05:19:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 306s autopkgtest [05:19:14]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook 307s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanook 1.33+dfsg-5 (dsc) [2100 B] 307s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanook 1.33+dfsg-5 (tar) [95.2 kB] 307s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanook 1.33+dfsg-5 (diff) [1818 kB] 307s gpgv: Signature made Tue Nov 29 11:02:40 2022 UTC 307s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 307s gpgv: issuer "tille@debian.org" 307s gpgv: Can't check signature: No public key 307s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-5.dsc: no acceptable signature found 308s autopkgtest [05:19:16]: testing package nanook version 1.33+dfsg-5 308s autopkgtest [05:19:16]: build not needed 308s autopkgtest [05:19:16]: test run-unit-test: preparing testbed 311s Note, using file '/tmp/autopkgtest.AzsYNe/1-autopkgtest-satdep.dsc' to get the build dependencies 311s Reading package lists... 311s Building dependency tree... 311s Reading state information... 311s Starting pkgProblemResolver with broken count: 0 311s Starting 2 pkgProblemResolver with broken count: 0 311s Done 312s The following NEW packages will be installed: 312s build-essential ca-certificates-java cpp cpp-13 cpp-13-x86-64-linux-gnu 312s cpp-x86-64-linux-gnu default-jre-headless fontconfig fontconfig-config 312s fonts-dejavu-core fonts-dejavu-mono fonts-lmodern g++ g++-13 312s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 312s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools java-common 312s last-align libaec0 libapache-pom-java libasan8 libasound2 libasound2-data 312s libatomic1 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 312s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcommons-io-java 312s libcommons-parent-java libcrypt-dev libcups2 libdatrie1 libdeflate0 312s libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3 312s libharfbuzz0b libhdf5-103-1 libhwasan0 libice6 libisl23 libitm1 libjbig0 312s libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4 liblsan0 312s libmpc3 libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 312s libpaper-utils libpaper1 libpcsclite1 libpixman-1-0 libpotrace0 libptexenc1 312s libquadmath0 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libsz2 312s libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 312s libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 312s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 312s libzzip-0-13 linux-libc-dev littler nanook nanook-examples 312s openjdk-21-jre-headless r-base-core r-cran-cli r-cran-colorspace 312s r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gridextra 312s r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle 312s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv 312s r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 312s r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-reshape 312s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 312s r-cran-viridislite r-cran-withr rpcsvc-proto t1utils tex-common texlive-base 312s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 312s 0 upgraded, 151 newly installed, 0 to remove and 0 not upgraded. 312s Need to get 228 MB of archives. 312s After this operation, 712 MB of additional disk space will be used. 312s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 312s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 312s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 312s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 312s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 312s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 312s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 312s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 312s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 312s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 312s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 312s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 312s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 312s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 312s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 312s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 312s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 312s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 312s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 312s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 312s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 312s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 312s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 312s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 312s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 312s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 312s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 312s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 312s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 312s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 312s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 312s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 312s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 312s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 312s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates-java all 20240118 [11.6 kB] 312s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 java-common all 0.75+exp1 [6798 B] 312s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libavahi-common-data amd64 0.8-13ubuntu2 [29.5 kB] 312s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libavahi-common3 amd64 0.8-13ubuntu2 [23.5 kB] 312s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libavahi-client3 amd64 0.8-13ubuntu2 [27.4 kB] 312s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libcups2 amd64 2.4.6-0ubuntu3 [269 kB] 312s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 312s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 312s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 312s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 312s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 312s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 312s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 312s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libasound2-data all 1.2.10-3build1 [20.7 kB] 312s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libasound2 amd64 1.2.10-3build1 [396 kB] 312s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 312s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 312s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libpcsclite1 amd64 2.0.0-1 [20.6 kB] 312s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 openjdk-21-jre-headless amd64 21.0.2+13-2 [46.6 MB] 313s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 default-jre-headless amd64 2:1.21-75+exp1 [3094 B] 313s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 313s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 313s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 313s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 313s Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 313s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-tools amd64 1.10.10+repack-3ubuntu1 [335 kB] 313s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 last-align amd64 1542-1 [1560 kB] 313s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 libapache-pom-java all 29-2 [5284 B] 313s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 313s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 313s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 313s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 313s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 313s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 313s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libcommons-parent-java all 56-1 [10.7 kB] 313s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libcommons-io-java all 2.11.0-2 [297 kB] 313s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 313s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 313s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 313s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 313s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 313s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9 [62.9 kB] 313s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 313s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 313s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 313s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 313s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 313s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 313s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 313s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 313s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 313s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 313s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9 [40.4 kB] 313s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 313s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 313s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9 [59.5 kB] 313s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 313s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 313s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9 [122 kB] 313s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 313s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 313s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 313s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 313s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 313s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 313s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 313s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] 313s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libxpm4 amd64 1:3.5.17-1 [35.9 kB] 313s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] 313s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 313s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] 313s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 313s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 313s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 313s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 313s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 313s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 313s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 313s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 313s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 313s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 313s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 313s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 313s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 313s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 313s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 313s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 313s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 314s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 314s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 314s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 314s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 314s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 314s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 314s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 314s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 314s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 314s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 314s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 314s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 314s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 314s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 314s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 314s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 314s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 314s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 314s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 314s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 314s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 314s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape all 0.8.9-1 [168 kB] 314s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 314s Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 314s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9 [8529 kB] 314s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 314s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 314s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 nanook all 1.33+dfsg-5 [194 kB] 314s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 nanook-examples all 1.33+dfsg-5 [1814 kB] 315s Preconfiguring packages ... 315s Fetched 228 MB in 2s (93.8 MB/s) 315s Selecting previously unselected package libc-dev-bin. 315s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71359 files and directories currently installed.) 315s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 315s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 315s Selecting previously unselected package linux-libc-dev:amd64. 315s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 315s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 315s Selecting previously unselected package libcrypt-dev:amd64. 315s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 315s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 316s Selecting previously unselected package libtirpc-dev:amd64. 316s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 316s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 316s Selecting previously unselected package libnsl-dev:amd64. 316s Preparing to unpack .../004-libnsl-dev_1.3.0-3_amd64.deb ... 316s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 316s Selecting previously unselected package rpcsvc-proto. 316s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 316s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 316s Selecting previously unselected package libc6-dev:amd64. 316s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_amd64.deb ... 316s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 316s Selecting previously unselected package libisl23:amd64. 316s Preparing to unpack .../007-libisl23_0.26-3_amd64.deb ... 316s Unpacking libisl23:amd64 (0.26-3) ... 316s Selecting previously unselected package libmpc3:amd64. 316s Preparing to unpack .../008-libmpc3_1.3.1-1_amd64.deb ... 316s Unpacking libmpc3:amd64 (1.3.1-1) ... 316s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 316s Preparing to unpack .../009-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 316s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 316s Selecting previously unselected package cpp-13. 316s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 316s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 316s Selecting previously unselected package cpp-x86-64-linux-gnu. 316s Preparing to unpack .../011-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 316s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 316s Selecting previously unselected package cpp. 316s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 316s Unpacking cpp (4:13.2.0-7ubuntu1) ... 316s Selecting previously unselected package libcc1-0:amd64. 316s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libgomp1:amd64. 316s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libitm1:amd64. 316s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libatomic1:amd64. 316s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libasan8:amd64. 316s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package liblsan0:amd64. 316s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libtsan2:amd64. 316s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libubsan1:amd64. 316s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libhwasan0:amd64. 316s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 316s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 317s Selecting previously unselected package libquadmath0:amd64. 317s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 317s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 317s Selecting previously unselected package libgcc-13-dev:amd64. 317s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 317s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 317s Preparing to unpack .../024-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 317s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package gcc-13. 317s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 317s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package gcc-x86-64-linux-gnu. 317s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 317s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 317s Selecting previously unselected package gcc. 317s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 317s Unpacking gcc (4:13.2.0-7ubuntu1) ... 317s Selecting previously unselected package libstdc++-13-dev:amd64. 317s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 317s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package g++-13-x86-64-linux-gnu. 317s Preparing to unpack .../029-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 317s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 318s Selecting previously unselected package g++-13. 318s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_amd64.deb ... 318s Unpacking g++-13 (13.2.0-17ubuntu2) ... 318s Selecting previously unselected package g++-x86-64-linux-gnu. 318s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 318s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 318s Selecting previously unselected package g++. 318s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 318s Unpacking g++ (4:13.2.0-7ubuntu1) ... 318s Selecting previously unselected package build-essential. 318s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 318s Unpacking build-essential (12.10ubuntu1) ... 318s Selecting previously unselected package ca-certificates-java. 318s Preparing to unpack .../034-ca-certificates-java_20240118_all.deb ... 318s Unpacking ca-certificates-java (20240118) ... 318s Selecting previously unselected package java-common. 318s Preparing to unpack .../035-java-common_0.75+exp1_all.deb ... 318s Unpacking java-common (0.75+exp1) ... 318s Selecting previously unselected package libavahi-common-data:amd64. 318s Preparing to unpack .../036-libavahi-common-data_0.8-13ubuntu2_amd64.deb ... 318s Unpacking libavahi-common-data:amd64 (0.8-13ubuntu2) ... 318s Selecting previously unselected package libavahi-common3:amd64. 318s Preparing to unpack .../037-libavahi-common3_0.8-13ubuntu2_amd64.deb ... 318s Unpacking libavahi-common3:amd64 (0.8-13ubuntu2) ... 318s Selecting previously unselected package libavahi-client3:amd64. 318s Preparing to unpack .../038-libavahi-client3_0.8-13ubuntu2_amd64.deb ... 318s Unpacking libavahi-client3:amd64 (0.8-13ubuntu2) ... 318s Selecting previously unselected package libcups2:amd64. 318s Preparing to unpack .../039-libcups2_2.4.6-0ubuntu3_amd64.deb ... 318s Unpacking libcups2:amd64 (2.4.6-0ubuntu3) ... 318s Selecting previously unselected package liblcms2-2:amd64. 318s Preparing to unpack .../040-liblcms2-2_2.14-2_amd64.deb ... 318s Unpacking liblcms2-2:amd64 (2.14-2) ... 318s Selecting previously unselected package libjpeg-turbo8:amd64. 318s Preparing to unpack .../041-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 318s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 318s Selecting previously unselected package libjpeg8:amd64. 318s Preparing to unpack .../042-libjpeg8_8c-2ubuntu11_amd64.deb ... 318s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 318s Selecting previously unselected package fonts-dejavu-mono. 318s Preparing to unpack .../043-fonts-dejavu-mono_2.37-8_all.deb ... 318s Unpacking fonts-dejavu-mono (2.37-8) ... 318s Selecting previously unselected package fonts-dejavu-core. 318s Preparing to unpack .../044-fonts-dejavu-core_2.37-8_all.deb ... 318s Unpacking fonts-dejavu-core (2.37-8) ... 318s Selecting previously unselected package fontconfig-config. 318s Preparing to unpack .../045-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 318s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 318s Selecting previously unselected package libfontconfig1:amd64. 318s Preparing to unpack .../046-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 318s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 318s Selecting previously unselected package libasound2-data. 318s Preparing to unpack .../047-libasound2-data_1.2.10-3build1_all.deb ... 318s Unpacking libasound2-data (1.2.10-3build1) ... 318s Selecting previously unselected package libasound2:amd64. 318s Preparing to unpack .../048-libasound2_1.2.10-3build1_amd64.deb ... 318s Unpacking libasound2:amd64 (1.2.10-3build1) ... 318s Selecting previously unselected package libgraphite2-3:amd64. 318s Preparing to unpack .../049-libgraphite2-3_1.3.14-2_amd64.deb ... 318s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 318s Selecting previously unselected package libharfbuzz0b:amd64. 318s Preparing to unpack .../050-libharfbuzz0b_8.3.0-2_amd64.deb ... 318s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 318s Selecting previously unselected package libpcsclite1:amd64. 318s Preparing to unpack .../051-libpcsclite1_2.0.0-1_amd64.deb ... 318s Unpacking libpcsclite1:amd64 (2.0.0-1) ... 318s Selecting previously unselected package openjdk-21-jre-headless:amd64. 318s Preparing to unpack .../052-openjdk-21-jre-headless_21.0.2+13-2_amd64.deb ... 318s Unpacking openjdk-21-jre-headless:amd64 (21.0.2+13-2) ... 320s Selecting previously unselected package default-jre-headless. 320s Preparing to unpack .../053-default-jre-headless_2%3a1.21-75+exp1_amd64.deb ... 320s Unpacking default-jre-headless (2:1.21-75+exp1) ... 320s Selecting previously unselected package fontconfig. 320s Preparing to unpack .../054-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 320s Unpacking fontconfig (2.15.0-1ubuntu1) ... 320s Selecting previously unselected package fonts-lmodern. 320s Preparing to unpack .../055-fonts-lmodern_2.005-1_all.deb ... 320s Unpacking fonts-lmodern (2.005-1) ... 320s Selecting previously unselected package libaec0:amd64. 320s Preparing to unpack .../056-libaec0_1.1.2-1_amd64.deb ... 320s Unpacking libaec0:amd64 (1.1.2-1) ... 320s Selecting previously unselected package libsz2:amd64. 320s Preparing to unpack .../057-libsz2_1.1.2-1_amd64.deb ... 320s Unpacking libsz2:amd64 (1.1.2-1) ... 320s Selecting previously unselected package libhdf5-103-1:amd64. 320s Preparing to unpack .../058-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 320s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 320s Selecting previously unselected package hdf5-tools. 320s Preparing to unpack .../059-hdf5-tools_1.10.10+repack-3ubuntu1_amd64.deb ... 320s Unpacking hdf5-tools (1.10.10+repack-3ubuntu1) ... 320s Selecting previously unselected package last-align. 320s Preparing to unpack .../060-last-align_1542-1_amd64.deb ... 320s Unpacking last-align (1542-1) ... 320s Selecting previously unselected package libapache-pom-java. 320s Preparing to unpack .../061-libapache-pom-java_29-2_all.deb ... 320s Unpacking libapache-pom-java (29-2) ... 320s Selecting previously unselected package libblas3:amd64. 320s Preparing to unpack .../062-libblas3_3.12.0-3_amd64.deb ... 320s Unpacking libblas3:amd64 (3.12.0-3) ... 320s Selecting previously unselected package libpixman-1-0:amd64. 320s Preparing to unpack .../063-libpixman-1-0_0.42.2-1_amd64.deb ... 320s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 320s Selecting previously unselected package libxcb-render0:amd64. 320s Preparing to unpack .../064-libxcb-render0_1.15-1_amd64.deb ... 320s Unpacking libxcb-render0:amd64 (1.15-1) ... 320s Selecting previously unselected package libxcb-shm0:amd64. 320s Preparing to unpack .../065-libxcb-shm0_1.15-1_amd64.deb ... 320s Unpacking libxcb-shm0:amd64 (1.15-1) ... 320s Selecting previously unselected package libxrender1:amd64. 320s Preparing to unpack .../066-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 320s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 320s Selecting previously unselected package libcairo2:amd64. 320s Preparing to unpack .../067-libcairo2_1.18.0-1_amd64.deb ... 320s Unpacking libcairo2:amd64 (1.18.0-1) ... 320s Selecting previously unselected package libcommons-parent-java. 320s Preparing to unpack .../068-libcommons-parent-java_56-1_all.deb ... 320s Unpacking libcommons-parent-java (56-1) ... 320s Selecting previously unselected package libcommons-io-java. 320s Preparing to unpack .../069-libcommons-io-java_2.11.0-2_all.deb ... 320s Unpacking libcommons-io-java (2.11.0-2) ... 320s Selecting previously unselected package libdatrie1:amd64. 320s Preparing to unpack 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libkpathsea6:amd64 (2023.20230311.66589-9) ... 320s Selecting previously unselected package liblapack3:amd64. 320s Preparing to unpack .../076-liblapack3_3.12.0-3_amd64.deb ... 320s Unpacking liblapack3:amd64 (3.12.0-3) ... 320s Selecting previously unselected package liblerc4:amd64. 320s Preparing to unpack .../077-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 320s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 320s Selecting previously unselected package libthai-data. 320s Preparing to unpack .../078-libthai-data_0.1.29-2_all.deb ... 320s Unpacking libthai-data (0.1.29-2) ... 320s Selecting previously unselected package libthai0:amd64. 320s Preparing to unpack .../079-libthai0_0.1.29-2_amd64.deb ... 320s Unpacking libthai0:amd64 (0.1.29-2) ... 320s Selecting previously unselected package libpango-1.0-0:amd64. 320s Preparing to unpack .../080-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 320s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 320s Selecting previously unselected package libpangoft2-1.0-0:amd64. 321s Preparing to unpack .../081-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 321s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 321s Selecting previously unselected package libpangocairo-1.0-0:amd64. 321s Preparing to unpack .../082-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 321s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 321s Selecting previously unselected package libpaper1:amd64. 321s Preparing to unpack .../083-libpaper1_1.1.29_amd64.deb ... 321s Unpacking libpaper1:amd64 (1.1.29) ... 321s Selecting previously unselected package libpaper-utils. 321s Preparing to unpack .../084-libpaper-utils_1.1.29_amd64.deb ... 321s Unpacking libpaper-utils (1.1.29) ... 321s Selecting previously unselected package libpotrace0:amd64. 321s Preparing to unpack .../085-libpotrace0_1.16-2_amd64.deb ... 321s Unpacking libpotrace0:amd64 (1.16-2) ... 321s Selecting previously unselected package libptexenc1:amd64. 321s Preparing to unpack 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.../091-libteckit0_2.5.12+ds1-1_amd64.deb ... 321s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 321s Selecting previously unselected package libtexlua53-5:amd64. 321s Preparing to unpack .../092-libtexlua53-5_2023.20230311.66589-9_amd64.deb ... 321s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9) ... 321s Selecting previously unselected package libjbig0:amd64. 321s Preparing to unpack .../093-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 321s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 321s Selecting previously unselected package libwebp7:amd64. 321s Preparing to unpack .../094-libwebp7_1.3.2-0.4_amd64.deb ... 321s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 321s Selecting previously unselected package libtiff6:amd64. 321s Preparing to unpack .../095-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 321s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 321s Selecting previously unselected package libxft2:amd64. 321s Preparing to unpack .../096-libxft2_2.3.6-1_amd64.deb ... 321s Unpacking libxft2:amd64 (2.3.6-1) ... 321s Selecting previously unselected package libxss1:amd64. 321s Preparing to unpack .../097-libxss1_1%3a1.2.3-1build2_amd64.deb ... 321s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 321s Selecting previously unselected package libtk8.6:amd64. 321s Preparing to unpack .../098-libtk8.6_8.6.13-2_amd64.deb ... 321s Unpacking libtk8.6:amd64 (8.6.13-2) ... 321s Selecting previously unselected package libxt6:amd64. 321s Preparing to unpack .../099-libxt6_1%3a1.2.1-1.1_amd64.deb ... 321s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 321s Selecting previously unselected package libxmu6:amd64. 321s Preparing to unpack .../100-libxmu6_2%3a1.1.3-3_amd64.deb ... 321s Unpacking libxmu6:amd64 (2:1.1.3-3) ... 321s Selecting previously unselected package libxpm4:amd64. 321s Preparing to unpack .../101-libxpm4_1%3a3.5.17-1_amd64.deb ... 321s Unpacking libxpm4:amd64 (1:3.5.17-1) ... 321s Selecting previously unselected package libxaw7:amd64. 321s Preparing to unpack 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Preparing to unpack .../108-r-base-core_4.3.2-1build1_amd64.deb ... 321s Unpacking r-base-core (4.3.2-1build1) ... 322s Selecting previously unselected package r-cran-littler. 322s Preparing to unpack .../109-r-cran-littler_0.3.19-1_amd64.deb ... 322s Unpacking r-cran-littler (0.3.19-1) ... 322s Selecting previously unselected package littler. 322s Preparing to unpack .../110-littler_0.3.19-1_all.deb ... 322s Unpacking littler (0.3.19-1) ... 322s Selecting previously unselected package r-cran-cli. 322s Preparing to unpack .../111-r-cran-cli_3.6.2-1_amd64.deb ... 322s Unpacking r-cran-cli (3.6.2-1) ... 322s Selecting previously unselected package r-cran-glue. 322s Preparing to unpack .../112-r-cran-glue_1.7.0-1_amd64.deb ... 322s Unpacking r-cran-glue (1.7.0-1) ... 322s Selecting previously unselected package r-cran-rlang. 322s Preparing to unpack .../113-r-cran-rlang_1.1.3-1_amd64.deb ... 322s Unpacking r-cran-rlang (1.1.3-1) ... 322s Selecting previously unselected package 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r-cran-nlme (3.1.164-1) ... 322s Selecting previously unselected package r-cran-matrix. 322s Preparing to unpack .../120-r-cran-matrix_1.6-5-1_amd64.deb ... 322s Unpacking r-cran-matrix (1.6-5-1) ... 322s Selecting previously unselected package r-cran-mgcv. 322s Preparing to unpack .../121-r-cran-mgcv_1.9-1-1_amd64.deb ... 322s Unpacking r-cran-mgcv (1.9-1-1) ... 322s Selecting previously unselected package r-cran-farver. 322s Preparing to unpack .../122-r-cran-farver_2.1.1-1_amd64.deb ... 322s Unpacking r-cran-farver (2.1.1-1) ... 322s Selecting previously unselected package r-cran-labeling. 322s Preparing to unpack .../123-r-cran-labeling_0.4.3-1_all.deb ... 322s Unpacking r-cran-labeling (0.4.3-1) ... 322s Selecting previously unselected package r-cran-colorspace. 322s Preparing to unpack .../124-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 322s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 323s Selecting previously unselected package r-cran-munsell. 323s Preparing to unpack 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previously unselected package r-cran-magrittr. 323s Preparing to unpack .../131-r-cran-magrittr_2.0.3-1_amd64.deb ... 323s Unpacking r-cran-magrittr (2.0.3-1) ... 323s Selecting previously unselected package r-cran-utf8. 323s Preparing to unpack .../132-r-cran-utf8_1.2.4-1_amd64.deb ... 323s Unpacking r-cran-utf8 (1.2.4-1) ... 323s Selecting previously unselected package r-cran-vctrs. 323s Preparing to unpack .../133-r-cran-vctrs_0.6.5-1_amd64.deb ... 323s Unpacking r-cran-vctrs (0.6.5-1) ... 323s Selecting previously unselected package r-cran-pillar. 323s Preparing to unpack .../134-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 323s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 323s Selecting previously unselected package r-cran-pkgconfig. 323s Preparing to unpack .../135-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 323s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 323s Selecting previously unselected package r-cran-tibble. 323s Preparing to unpack .../136-r-cran-tibble_3.2.1+dfsg-2_amd64.deb 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326s Setting up libxi6:amd64 (2:1.8.1-1) ... 326s Setting up java-common (0.75+exp1) ... 326s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 326s Setting up libdatrie1:amd64 (0.2.13-3) ... 326s Setting up libxcb-render0:amd64 (1.15-1) ... 326s Setting up unzip (6.0-28ubuntu3) ... 326s Setting up x11-common (1:7.7+23ubuntu2) ... 327s Setting up libdeflate0:amd64 (1.19-1) ... 327s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 327s Setting up libxcb-shm0:amd64 (1.15-1) ... 327s Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... 327s Setting up libpaper-utils (1.1.29) ... 327s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 327s Setting up libaec0:amd64 (1.1.2-1) ... 327s Setting up last-align (1542-1) ... 327s Setting up libasound2-data (1.2.10-3build1) ... 327s Setting up tex-common (6.18) ... 327s update-language: texlive-base not installed and configured, doing nothing! 327s Setting up zip (3.0-13) ... 327s Setting up libblas3:amd64 (3.12.0-3) ... 327s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 327s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 327s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 327s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 327s Setting up libapache-pom-java (29-2) ... 327s Setting up libavahi-common-data:amd64 (0.8-13ubuntu2) ... 327s Setting up t1utils (1.41-4build2) ... 327s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9) ... 327s Setting up fonts-dejavu-mono (2.37-8) ... 327s Setting up libmpc3:amd64 (1.3.1-1) ... 327s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 327s Setting up fonts-dejavu-core (2.37-8) ... 327s Setting up libpcsclite1:amd64 (2.0.0-1) ... 327s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 327s Setting up libkpathsea6:amd64 (2023.20230311.66589-9) ... 327s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libwebp7:amd64 (1.3.2-0.4) ... 327s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libnsl-dev:amd64 (1.3.0-3) ... 327s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 327s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libasound2:amd64 (1.2.10-3build1) ... 327s Setting up fonts-lmodern (2.005-1) ... 327s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 327s Setting up libthai-data (0.1.29-2) ... 327s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 327s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 327s Setting up ca-certificates-java (20240118) ... 327s No JRE found. Skipping Java certificates setup. 327s Setting up libisl23:amd64 (0.26-3) ... 327s Setting up libc-dev-bin (2.39-0ubuntu2) ... 327s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 327s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 327s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 327s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libsz2:amd64 (1.1.2-1) ... 327s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 327s Setting up libsynctex2:amd64 (2023.20230311.66589-9) ... 327s Setting up libpotrace0:amd64 (1.16-2) ... 327s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 327s Setting up libice6:amd64 (2:1.0.10-1build2) ... 327s Setting up liblapack3:amd64 (3.12.0-3) ... 327s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 327s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 327s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 327s Setting up libcommons-parent-java (56-1) ... 327s Setting up libavahi-common3:amd64 (0.8-13ubuntu2) ... 327s Setting up libthai0:amd64 (0.1.29-2) ... 327s Setting up libptexenc1:amd64 (2023.20230311.66589-9) ... 327s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 327s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 327s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 327s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 327s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 327s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 327s Setting up libavahi-client3:amd64 (0.8-13ubuntu2) ... 327s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 327s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 327s Setting up fontconfig (2.15.0-1ubuntu1) ... 329s Regenerating fonts cache... done. 329s Setting up libxft2:amd64 (2.3.6-1) ... 329s Setting up cpp-13 (13.2.0-17ubuntu2) ... 329s Setting up libcommons-io-java (2.11.0-2) ... 329s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 329s Setting up libtk8.6:amd64 (8.6.13-2) ... 329s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 329s Setting up libcairo2:amd64 (1.18.0-1) ... 329s Setting up hdf5-tools (1.10.10+repack-3ubuntu1) ... 329s Setting up gcc-13 (13.2.0-17ubuntu2) ... 329s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 329s Setting up libcups2:amd64 (2.4.6-0ubuntu3) ... 329s Setting up cpp (4:13.2.0-7ubuntu1) ... 329s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 329s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 329s Setting up libxmu6:amd64 (2:1.1.3-3) ... 329s Setting up openjdk-21-jre-headless:amd64 (21.0.2+13-2) ... 329s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode 329s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 329s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 329s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 329s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 329s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 329s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 329s Setting up libxaw7:amd64 (2:1.0.14-1) ... 329s Setting up gcc (4:13.2.0-7ubuntu1) ... 329s Setting up r-base-core (4.3.2-1build1) ... 329s 329s Creating config file /etc/R/Renviron with new version 329s Setting up r-cran-labeling (0.4.3-1) ... 329s Setting up r-cran-lattice (0.22-5-1) ... 329s Setting up r-cran-nlme (3.1.164-1) ... 329s Setting up r-cran-farver (2.1.1-1) ... 329s Setting up r-cran-viridislite (0.4.2-2) ... 329s Setting up texlive-binaries (2023.20230311.66589-9) ... 329s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 329s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 329s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 329s Setting up r-cran-r6 (2.5.1-1) ... 330s Setting up r-cran-pkgkitten (0.2.3-1) ... 330s Setting up texlive-base (2023.20240207-1) ... 330s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 330s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 330s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 331s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 331s Setting up r-cran-magrittr (2.0.3-1) ... 331s Setting up r-cran-littler (0.3.19-1) ... 331s Setting up r-cran-rcpp (1.0.12-1) ... 331s Setting up g++-13 (13.2.0-17ubuntu2) ... 331s Setting up r-cran-rlang (1.1.3-1) ... 331s Setting up littler (0.3.19-1) ... 331s Setting up r-cran-withr (2.5.0-1) ... 331s Setting up r-cran-fansi (1.0.5-1) ... 331s Setting up r-cran-mass (7.3-60.0.1-1) ... 331s Setting up r-cran-glue (1.7.0-1) ... 331s Setting up r-cran-cli (3.6.2-1) ... 331s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 331s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 331s Setting up r-cran-utf8 (1.2.4-1) ... 331s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 331s Setting up texlive-latex-base (2023.20240207-1) ... 331s Setting up r-cran-plyr (1.8.9-1) ... 331s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 331s Setting up r-cran-isoband (0.2.7-1) ... 331s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 331s Setting up r-cran-matrix (1.6-5-1) ... 331s Setting up r-cran-mgcv (1.9-1-1) ... 331s Setting up g++ (4:13.2.0-7ubuntu1) ... 331s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 331s Setting up build-essential (12.10ubuntu1) ... 331s Setting up r-cran-vctrs (0.6.5-1) ... 331s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 331s Setting up r-cran-reshape (0.8.9-1) ... 331s Setting up r-cran-munsell (0.5.0-2build1) ... 331s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 331s Setting up r-cran-gridextra (2.3-3build1) ... 331s Setting up r-cran-scales (1.3.0-1) ... 331s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 331s Processing triggers for install-info (7.1-3) ... 331s Processing triggers for libc-bin (2.39-0ubuntu2) ... 331s Processing triggers for man-db (2.12.0-3) ... 333s Processing triggers for ca-certificates-java (20240118) ... 333s Adding debian:ACCVRAIZ1.pem 333s Adding debian:AC_RAIZ_FNMT-RCM.pem 333s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 333s Adding debian:ANF_Secure_Server_Root_CA.pem 333s Adding debian:Actalis_Authentication_Root_CA.pem 333s Adding debian:AffirmTrust_Commercial.pem 333s Adding debian:AffirmTrust_Networking.pem 333s Adding debian:AffirmTrust_Premium.pem 333s Adding debian:AffirmTrust_Premium_ECC.pem 333s Adding debian:Amazon_Root_CA_1.pem 333s Adding debian:Amazon_Root_CA_2.pem 333s Adding debian:Amazon_Root_CA_3.pem 333s Adding debian:Amazon_Root_CA_4.pem 333s Adding debian:Atos_TrustedRoot_2011.pem 333s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 333s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 333s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 333s Adding debian:BJCA_Global_Root_CA1.pem 333s Adding debian:BJCA_Global_Root_CA2.pem 333s Adding debian:Baltimore_CyberTrust_Root.pem 333s Adding debian:Buypass_Class_2_Root_CA.pem 333s Adding debian:Buypass_Class_3_Root_CA.pem 333s Adding debian:CA_Disig_Root_R2.pem 333s Adding debian:CFCA_EV_ROOT.pem 333s Adding debian:COMODO_Certification_Authority.pem 333s Adding debian:COMODO_ECC_Certification_Authority.pem 333s Adding debian:COMODO_RSA_Certification_Authority.pem 333s Adding debian:Certainly_Root_E1.pem 333s Adding debian:Certainly_Root_R1.pem 333s Adding debian:Certigna.pem 333s Adding debian:Certigna_Root_CA.pem 333s Adding debian:Certum_EC-384_CA.pem 333s Adding debian:Certum_Trusted_Network_CA.pem 333s Adding debian:Certum_Trusted_Network_CA_2.pem 333s Adding debian:Certum_Trusted_Root_CA.pem 333s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 333s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 333s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 333s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 333s Adding debian:Comodo_AAA_Services_root.pem 333s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 333s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 333s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 333s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 333s Adding debian:DigiCert_Assured_ID_Root_CA.pem 333s Adding debian:DigiCert_Assured_ID_Root_G2.pem 333s Adding debian:DigiCert_Assured_ID_Root_G3.pem 333s Adding debian:DigiCert_Global_Root_CA.pem 333s Adding debian:DigiCert_Global_Root_G2.pem 333s Adding debian:DigiCert_Global_Root_G3.pem 333s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 333s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 333s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 333s Adding debian:DigiCert_Trusted_Root_G4.pem 333s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 333s Adding debian:Entrust_Root_Certification_Authority.pem 333s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 333s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 334s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 334s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 334s Adding debian:GLOBALTRUST_2020.pem 334s Adding debian:GTS_Root_R1.pem 334s Adding debian:GTS_Root_R2.pem 334s Adding debian:GTS_Root_R3.pem 334s Adding debian:GTS_Root_R4.pem 334s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 334s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 334s Adding debian:GlobalSign_Root_CA.pem 334s Adding debian:GlobalSign_Root_CA_-_R3.pem 334s Adding debian:GlobalSign_Root_CA_-_R6.pem 334s Adding debian:GlobalSign_Root_E46.pem 334s Adding debian:GlobalSign_Root_R46.pem 334s Adding debian:Go_Daddy_Class_2_CA.pem 334s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 334s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 334s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 334s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 334s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 334s Adding debian:HiPKI_Root_CA_-_G1.pem 334s Adding debian:Hongkong_Post_Root_CA_3.pem 334s Adding debian:ISRG_Root_X1.pem 334s Adding debian:ISRG_Root_X2.pem 334s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 334s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 334s Adding debian:Izenpe.com.pem 334s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 334s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 334s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 334s Adding debian:NAVER_Global_Root_Certification_Authority.pem 334s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 334s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 334s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 334s Adding debian:QuoVadis_Root_CA_1_G3.pem 334s Adding debian:QuoVadis_Root_CA_2.pem 334s Adding debian:QuoVadis_Root_CA_2_G3.pem 334s Adding debian:QuoVadis_Root_CA_3.pem 334s Adding debian:QuoVadis_Root_CA_3_G3.pem 334s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 334s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 334s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 334s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 334s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 334s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 334s Adding debian:SZAFIR_ROOT_CA2.pem 334s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 334s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 334s Adding debian:SecureSign_RootCA11.pem 334s Adding debian:SecureTrust_CA.pem 334s Adding debian:Secure_Global_CA.pem 334s Adding debian:Security_Communication_ECC_RootCA1.pem 334s Adding debian:Security_Communication_RootCA2.pem 334s Adding debian:Security_Communication_RootCA3.pem 334s Adding debian:Security_Communication_Root_CA.pem 334s Adding debian:Starfield_Class_2_CA.pem 334s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 334s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 334s Adding debian:SwissSign_Gold_CA_-_G2.pem 334s Adding debian:SwissSign_Silver_CA_-_G2.pem 334s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 334s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 334s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 334s Adding debian:TWCA_Global_Root_CA.pem 334s Adding debian:TWCA_Root_Certification_Authority.pem 334s Adding debian:TeliaSonera_Root_CA_v1.pem 334s Adding debian:Telia_Root_CA_v2.pem 334s Adding debian:TrustAsia_Global_Root_CA_G3.pem 334s Adding debian:TrustAsia_Global_Root_CA_G4.pem 334s Adding debian:Trustwave_Global_Certification_Authority.pem 334s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 334s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 334s Adding debian:TunTrust_Root_CA.pem 334s Adding debian:UCA_Extended_Validation_Root.pem 334s Adding debian:UCA_Global_G2_Root.pem 334s Adding debian:USERTrust_ECC_Certification_Authority.pem 334s Adding debian:USERTrust_RSA_Certification_Authority.pem 334s Adding debian:XRamp_Global_CA_Root.pem 334s Adding debian:certSIGN_ROOT_CA.pem 334s Adding debian:certSIGN_Root_CA_G2.pem 334s Adding debian:e-Szigno_Root_CA_2017.pem 334s Adding debian:ePKI_Root_Certification_Authority.pem 334s Adding debian:emSign_ECC_Root_CA_-_C3.pem 334s Adding debian:emSign_ECC_Root_CA_-_G3.pem 334s Adding debian:emSign_Root_CA_-_C1.pem 334s Adding debian:emSign_Root_CA_-_G1.pem 334s Adding debian:vTrus_ECC_Root_CA.pem 334s Adding debian:vTrus_Root_CA.pem 334s done. 334s Setting up default-jre-headless (2:1.21-75+exp1) ... 334s Setting up nanook (1.33+dfsg-5) ... 334s Processing triggers for tex-common (6.18) ... 334s Running updmap-sys. This may take some time... done. 334s Running mktexlsr /var/lib/texmf ... done. 334s Building format(s) --all. 365s This may take some time... done. 366s Reading package lists... 366s Building dependency tree... 366s Reading state information... 366s Starting pkgProblemResolver with broken count: 0 366s Starting 2 pkgProblemResolver with broken count: 0 366s Done 367s The following NEW packages will be installed: 367s autopkgtest-satdep 367s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 367s Need to get 0 B/696 B of archives. 367s After this operation, 0 B of additional disk space will be used. 367s Get:1 /tmp/autopkgtest.AzsYNe/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 367s Selecting previously unselected package autopkgtest-satdep. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 87083 files and directories currently installed.) 367s Preparing to unpack .../2-autopkgtest-satdep.deb ... 367s Unpacking autopkgtest-satdep (0) ... 367s Setting up autopkgtest-satdep (0) ... 369s (Reading database ... 87083 files and directories currently installed.) 369s Removing autopkgtest-satdep (0) ... 370s autopkgtest [05:20:18]: test run-unit-test: [----------------------- 377s 377s NanoOK v1.33 377s 377s Comments/bugs to: richard.leggett@earlham.ac.uk 377s Follow NanoOK on twitter: @NanoOK_Software 377s 377s Scripts dir: /usr/share/nanook/bin 377s 377s Checking dependencies 377s *** ERROR: Couldn't find Rscript - is R installed? *** 377s pdfTeX 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) 377s h5dump: Version 1.10.10 377s 377s Making directory /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta 377s Checking FAST5 directory structure... 377s Using pass/fail dirs: yes 377s Using batch dirs: no 377s Using barcodes: no 377s 380s Processing [ ] 0/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 380s 380s DONE 380s 380s NanoOK v1.33 380s 380s Comments/bugs to: richard.leggett@earlham.ac.uk 380s Follow NanoOK on twitter: @NanoOK_Software 380s 380s Scripts dir: /usr/share/nanook/bin 380s 380s Checking dependencies 380s *** ERROR: Couldn't find Rscript - is R installed? *** 380s pdfTeX 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) 380s h5dump: Version 1.10.10 380s 380s Making directory /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last 380s Making directory /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last 380s Checking FASTA/Q directory structure... 380s Using pass/fail dirs: yes 380s Using batch dirs: no 380s Using barcodes: no 380s 383s Processing [ ] 0/3 Processing [================ ] 1/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 383s 383s DONE 383s 383s NanoOK v1.33 383s 383s Comments/bugs to: richard.leggett@earlham.ac.uk 383s Follow NanoOK on twitter: @NanoOK_Software 383s 383s Scripts dir: /usr/share/nanook/bin 383s 383s Checking dependencies 383s *** ERROR: Couldn't find Rscript - is R installed? *** 383s pdfTeX 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) 383s h5dump: Version 1.10.10 383s 383s Checking FASTA/Q directory structure... 383s Using pass/fail dirs: yes 383s Using batch dirs: no 383s Using barcodes: no 383s 383s Using .sizes file ecoli_dh10b_cs.fasta.sizes 383s Note: if you have changed the reference file, you need to delete the .sizes file and re-run. 383s 383s Reading reference sizes and making directories 383s Escherichia_coli 4686137 383s Control_sequence 3560 383s 383s Calculating reference GC 383s Escherichia_coli 384s Control_sequence 384s 384s Parsing Template 384s [ ] 0/1 [==================================================] 1/1 384s Warning: not many alignments (1) found to process. 384s 384s Parsing Complement 384s [ ] 0/1 [==================================================] 1/1 384s Warning: not many alignments (1) found to process. 384s 384s Parsing 2D 384s [ ] 0/1 [==================================================] 1/1 384s Warning: not many alignments (1) found to process. 384s 384s Writing analysis files 384s [================ ] 1/3 [================================= ] 2/3 [==================================================] 3/3 384s Writing object 385s 385s Plotting graphs 386s [ ] 0/1 [==================================================] 1/1 386s 386s Making report 386s Can't find /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Template_lengths.pdf 386s Can't find /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Complement_lengths.pdf 386s Can't find /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_2D_lengths.pdf 386s Can't find /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Template_21mers.pdf 386s Can't find /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_Complement_21mers.pdf 386s Can't find /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/graphs_last_passonly/all_2D_21mers.pdf 386s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s autopkgtest [05:20:34]: test run-unit-test: -----------------------] 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s Error: motif list smaller than 10 387s 387s Making PDF 387s pdflatex output /tmp/autopkgtest.AzsYNe/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/pdflatex_output_log_last_passonly.txt 387s 387s Done 388s autopkgtest [05:20:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 388s run-unit-test PASS 388s autopkgtest [05:20:36]: @@@@@@@@@@@@@@@@@@@@ summary 388s run-unit-test PASS 406s Creating nova instance adt-noble-i386-nanook-20240321-051408-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...