0s autopkgtest [12:21:49]: starting date and time: 2024-03-21 12:21:49+0000
  0s autopkgtest [12:21:49]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [12:21:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4ms9rl2p/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:h5py --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-59.secgroup --name adt-noble-i386-mcaller-20240321-114848-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
380s autopkgtest [12:28:09]: testbed dpkg architecture: amd64
381s autopkgtest [12:28:10]: testbed apt version: 2.7.12
381s autopkgtest [12:28:10]: test architecture: i386
381s autopkgtest [12:28:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup
381s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
381s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB]
381s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3774 kB]
381s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
381s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
381s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [460 kB]
381s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [696 kB]
381s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
381s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
381s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
381s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
381s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1273 kB]
381s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4238 kB]
381s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
381s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
381s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
381s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
385s Fetched 11.3 MB in 1s (7799 kB/s)
385s Reading package lists...
387s Reading package lists...
387s Building dependency tree...
387s Reading state information...
388s Calculating upgrade...
388s The following packages will be upgraded:
388s   debianutils linux-firmware
388s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
388s Need to get 476 MB of archives.
388s After this operation, 5724 kB of additional disk space will be used.
388s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17 [89.8 kB]
388s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-firmware amd64 20240318.git3b128b60-0ubuntu1 [475 MB]
392s Fetched 476 MB in 3s (142 MB/s)
392s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71803 files and directories currently installed.)
392s Preparing to unpack .../debianutils_5.17_amd64.deb ...
392s Unpacking debianutils (5.17) over (5.16) ...
392s Setting up debianutils (5.17) ...
392s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71803 files and directories currently installed.)
392s Preparing to unpack .../linux-firmware_20240318.git3b128b60-0ubuntu1_amd64.deb ...
392s Unpacking linux-firmware (20240318.git3b128b60-0ubuntu1) over (20240202.git36777504-0ubuntu1) ...
395s Setting up linux-firmware (20240318.git3b128b60-0ubuntu1) ...
395s Processing triggers for man-db (2.12.0-3) ...
396s Processing triggers for initramfs-tools (0.142ubuntu20) ...
396s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
396s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
404s Reading package lists...
404s Building dependency tree...
404s Reading state information...
404s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
405s sh: Attempting to set up Debian/Ubuntu apt sources automatically
405s sh: Distribution appears to be Ubuntu
406s Reading package lists...
406s Building dependency tree...
406s Reading state information...
406s eatmydata is already the newest version (131-1).
406s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
406s Reading package lists...
407s Building dependency tree...
407s Reading state information...
407s dbus is already the newest version (1.14.10-4ubuntu1).
407s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
407s Reading package lists...
407s Building dependency tree...
407s Reading state information...
408s rng-tools-debian is already the newest version (2.4).
408s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
408s Reading package lists...
408s Building dependency tree...
408s Reading state information...
408s The following packages will be REMOVED:
408s   cloud-init* python3-configobj* python3-debconf*
408s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
408s After this operation, 3252 kB disk space will be freed.
408s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
408s Removing cloud-init (24.1.1-0ubuntu1) ...
409s Removing python3-configobj (5.0.8-3) ...
409s Removing python3-debconf (1.5.86) ...
409s Processing triggers for man-db (2.12.0-3) ...
409s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71476 files and directories currently installed.)
409s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
410s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
410s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
410s invoke-rc.d: policy-rc.d denied execution of try-restart.
410s Reading package lists...
410s Building dependency tree...
410s Reading state information...
411s linux-generic is already the newest version (6.8.0-11.11+1).
411s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
411s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
411s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
411s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
413s Reading package lists...
413s Reading package lists...
413s Building dependency tree...
413s Reading state information...
414s Calculating upgrade...
414s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
414s Reading package lists...
414s Building dependency tree...
414s Reading state information...
415s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
415s autopkgtest [12:28:44]: rebooting testbed after setup commands that affected boot
568s autopkgtest [12:31:17]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
568s autopkgtest [12:31:17]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller
569s Get:1 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B]
569s Get:2 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB]
569s Get:3 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B]
570s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC
570s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
570s gpgv:                issuer "emollier@debian.org"
570s gpgv: Can't check signature: No public key
570s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found
570s autopkgtest [12:31:19]: testing package mcaller version 1.0.3+git20210624.b415090-3
570s autopkgtest [12:31:19]: build not needed
571s autopkgtest [12:31:20]: test run-unit-test: preparing testbed
574s Note, using file '/tmp/autopkgtest.OqTEAt/1-autopkgtest-satdep.dsc' to get the build dependencies
574s Reading package lists...
574s Building dependency tree...
574s Reading state information...
574s Starting pkgProblemResolver with broken count: 0
575s Starting 2 pkgProblemResolver with broken count: 0
575s Done
575s The following NEW packages will be installed:
575s   blt build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
575s   fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
575s   fonts-lyx fonts-urw-base35 g++ g++-13 g++-13-x86-64-linux-gnu
575s   g++-x86-64-linux-gnu gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu
575s   libaec0 libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2
575s   libcc1-0 libcrypt-dev libdeflate0 libfontconfig1 libfontenc1 libgcc-13-dev
575s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1
575s   libhdf5-hl-100 libhts3 libhtscodecs2 libhwasan0 libimagequant0 libisl23
575s   libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
575s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3
575s   libnsl-dev libopenjp2-7 libpixman-1-0 libqhull-r8.0 libquadmath0 libraqm0
575s   libsharpyuv0 libstdc++-13-dev libsz2 libtcl8.6 libtiff6 libtirpc-dev
575s   libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3
575s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1
575s   linux-libc-dev mcaller python-matplotlib-data python3-appdirs
575s   python3-biopython python3-brotli python3-cairo python3-contourpy
575s   python3-cycler python3-dateutil python3-decorator python3-fonttools
575s   python3-freetype python3-fs python3-h5py python3-h5py-serial python3-joblib
575s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
575s   python3-mpmath python3-numpy python3-packaging python3-pandas
575s   python3-pandas-lib python3-pil python3-pil.imagetk python3-pysam
575s   python3-reportlab python3-rlpycairo python3-scipy python3-seaborn
575s   python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl
575s   python3-tk python3-ufolib2 python3-unicodedata2 rpcsvc-proto sgml-base
575s   tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings
575s   xfonts-utils xml-core
575s 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded.
575s Need to get 180 MB of archives.
575s After this operation, 779 MB of additional disk space will be used.
575s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 sgml-base all 1.31 [11.4 kB]
575s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB]
575s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
575s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
575s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libfontenc1 amd64 1:1.1.8-1 [14.0 kB]
575s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
575s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
575s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-utils amd64 1:7.7+6build2 [94.6 kB]
575s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB]
575s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
575s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
575s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
575s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB]
575s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B]
575s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB]
575s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [630 kB]
575s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 blt amd64 2.5.3+dfsg-7 [4826 B]
575s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
575s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
575s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
575s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
575s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
575s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
575s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
575s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
575s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
575s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
575s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
575s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
575s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
575s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
575s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
575s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
575s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
575s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
575s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
575s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
575s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
575s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
575s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
575s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
576s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
576s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
576s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
576s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
576s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
576s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
576s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
576s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
576s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
576s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
576s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-extra all 2.37-8 [1947 kB]
576s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lyx all 2.4.0~RC3-1 [170 kB]
576s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB]
576s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
576s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
576s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
576s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
576s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
576s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
576s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
576s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
576s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
576s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B]
576s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB]
576s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB]
576s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libhtscodecs2 amd64 1.6.0-1 [98.9 kB]
576s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libhts3 amd64 1.18+ds-1 [428 kB]
576s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libimagequant0 amd64 2.18.0-1 [36.3 kB]
576s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
576s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
576s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
576s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
576s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
576s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [30.4 kB]
576s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB]
576s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
576s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
576s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB]
576s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libraqm0 amd64 0.10.1-1 [14.6 kB]
576s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
576s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
576s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
576s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
576s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpdemux2 amd64 1.3.2-0.4 [12.4 kB]
576s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpmux3 amd64 1.3.2-0.4 [25.6 kB]
576s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libxslt1.1 amd64 1.1.35-1 [164 kB]
576s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-joblib all 1.3.2-1 [207 kB]
576s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB]
576s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
576s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-scipy amd64 1.11.4-6 [19.4 MB]
576s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
576s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sklearn-lib amd64 1.4.1.post1+dfsg-1 [7003 kB]
576s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB]
576s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu1 [1510 kB]
576s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-h5py all 3.10.0-1ubuntu1 [7970 B]
576s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 python3-tk amd64 3.11.5-1 [112 kB]
576s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pil.imagetk amd64 10.2.0-1 [9584 B]
576s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB]
576s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 python3-pil amd64 10.2.0-1 [487 kB]
576s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 python3-cairo amd64 1.25.1-2 [148 kB]
576s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-freetype all 2.4.0-1 [83.1 kB]
576s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B]
576s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-reportlab all 4.1.0-1 [683 kB]
576s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 xml-core all 0.19 [20.3 kB]
576s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB]
576s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-biopython amd64 1.81+dfsg-3 [1670 kB]
576s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB]
577s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 python3-dateutil all 2.8.2-3 [79.2 kB]
577s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-contourpy amd64 1.0.7-1build2 [283 kB]
577s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-cycler all 0.11.0-2 [8202 B]
577s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-brotli amd64 1.1.0-2 [340 kB]
577s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
577s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-mpmath all 1.2.1-3 [421 kB]
577s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sympy all 1.12-7 [3966 kB]
577s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB]
577s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-fs all 2.4.16-3 [91.1 kB]
577s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 python3-lxml amd64 5.1.0-1 [2179 kB]
577s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build2 [27.0 kB]
577s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1 [367 kB]
577s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
577s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-fonttools amd64 4.46.0-1 [1693 kB]
577s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-kiwisolver amd64 1.4.4-1build2 [69.4 kB]
577s Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 python3-packaging all 23.2-1 [40.6 kB]
577s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-matplotlib amd64 3.6.3-1ubuntu3 [7486 kB]
577s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-4ubuntu2 [8348 kB]
577s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
577s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-seaborn all 0.13.2-2 [225 kB]
577s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pysam amd64 0.22.0+ds-1 [4556 kB]
577s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB]
577s Fetched 180 MB in 2s (95.2 MB/s)
577s Selecting previously unselected package sgml-base.
578s (Reading database ... 
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(Reading database ... 71421 files and directories currently installed.)
578s Preparing to unpack .../000-sgml-base_1.31_all.deb ...
578s Unpacking sgml-base (1.31) ...
578s Selecting previously unselected package libtcl8.6:amd64.
578s Preparing to unpack .../001-libtcl8.6_8.6.13+dfsg-2_amd64.deb ...
578s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ...
578s Selecting previously unselected package fonts-dejavu-mono.
578s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ...
578s Unpacking fonts-dejavu-mono (2.37-8) ...
578s Selecting previously unselected package fonts-dejavu-core.
578s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ...
578s Unpacking fonts-dejavu-core (2.37-8) ...
578s Selecting previously unselected package libfontenc1:amd64.
578s Preparing to unpack .../004-libfontenc1_1%3a1.1.8-1_amd64.deb ...
578s Unpacking libfontenc1:amd64 (1:1.1.8-1) ...
578s Selecting previously unselected package x11-common.
578s Preparing to unpack .../005-x11-common_1%3a7.7+23ubuntu2_all.deb ...
578s Unpacking x11-common (1:7.7+23ubuntu2) ...
578s Selecting previously unselected package xfonts-encodings.
578s Preparing to unpack .../006-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
578s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
578s Selecting previously unselected package xfonts-utils.
578s Preparing to unpack .../007-xfonts-utils_1%3a7.7+6build2_amd64.deb ...
578s Unpacking xfonts-utils (1:7.7+6build2) ...
578s Selecting previously unselected package fonts-urw-base35.
578s Preparing to unpack .../008-fonts-urw-base35_20200910-8_all.deb ...
578s Unpacking fonts-urw-base35 (20200910-8) ...
578s Selecting previously unselected package fontconfig-config.
578s Preparing to unpack .../009-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
578s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
578s Selecting previously unselected package libfontconfig1:amd64.
578s Preparing to unpack .../010-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
578s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
578s Selecting previously unselected package libxrender1:amd64.
578s Preparing to unpack .../011-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
578s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
578s Selecting previously unselected package libxft2:amd64.
578s Preparing to unpack .../012-libxft2_2.3.6-1_amd64.deb ...
578s Unpacking libxft2:amd64 (2.3.6-1) ...
578s Selecting previously unselected package libxss1:amd64.
578s Preparing to unpack .../013-libxss1_1%3a1.2.3-1build2_amd64.deb ...
578s Unpacking libxss1:amd64 (1:1.2.3-1build2) ...
579s Selecting previously unselected package libtk8.6:amd64.
579s Preparing to unpack .../014-libtk8.6_8.6.13-2_amd64.deb ...
579s Unpacking libtk8.6:amd64 (8.6.13-2) ...
579s Selecting previously unselected package tk8.6-blt2.5.
579s Preparing to unpack .../015-tk8.6-blt2.5_2.5.3+dfsg-7_amd64.deb ...
579s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ...
579s Selecting previously unselected package blt.
579s Preparing to unpack .../016-blt_2.5.3+dfsg-7_amd64.deb ...
579s Unpacking blt (2.5.3+dfsg-7) ...
579s Selecting previously unselected package libc-dev-bin.
579s Preparing to unpack .../017-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
579s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
579s Selecting previously unselected package linux-libc-dev:amd64.
579s Preparing to unpack .../018-linux-libc-dev_6.8.0-11.11_amd64.deb ...
579s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
579s Selecting previously unselected package libcrypt-dev:amd64.
579s Preparing to unpack .../019-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
579s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
579s Selecting previously unselected package libtirpc-dev:amd64.
579s Preparing to unpack .../020-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
579s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
579s Selecting previously unselected package libnsl-dev:amd64.
579s Preparing to unpack .../021-libnsl-dev_1.3.0-3_amd64.deb ...
579s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
579s Selecting previously unselected package rpcsvc-proto.
579s Preparing to unpack .../022-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
579s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
579s Selecting previously unselected package libc6-dev:amd64.
579s Preparing to unpack .../023-libc6-dev_2.39-0ubuntu2_amd64.deb ...
579s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
579s Selecting previously unselected package libisl23:amd64.
579s Preparing to unpack .../024-libisl23_0.26-3_amd64.deb ...
579s Unpacking libisl23:amd64 (0.26-3) ...
579s Selecting previously unselected package libmpc3:amd64.
579s Preparing to unpack .../025-libmpc3_1.3.1-1_amd64.deb ...
579s Unpacking libmpc3:amd64 (1.3.1-1) ...
579s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
579s Preparing to unpack .../026-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
579s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
579s Selecting previously unselected package cpp-13.
579s Preparing to unpack .../027-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
579s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
579s Selecting previously unselected package cpp-x86-64-linux-gnu.
579s Preparing to unpack .../028-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
579s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
579s Selecting previously unselected package cpp.
579s Preparing to unpack .../029-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
579s Unpacking cpp (4:13.2.0-7ubuntu1) ...
579s Selecting previously unselected package libcc1-0:amd64.
579s Preparing to unpack .../030-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
579s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
579s Selecting previously unselected package libgomp1:amd64.
579s Preparing to unpack .../031-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
579s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
579s Selecting previously unselected package libitm1:amd64.
579s Preparing to unpack .../032-libitm1_14-20240303-1ubuntu1_amd64.deb ...
579s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libatomic1:amd64.
580s Preparing to unpack .../033-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libasan8:amd64.
580s Preparing to unpack .../034-libasan8_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package liblsan0:amd64.
580s Preparing to unpack .../035-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libtsan2:amd64.
580s Preparing to unpack .../036-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libubsan1:amd64.
580s Preparing to unpack .../037-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libhwasan0:amd64.
580s Preparing to unpack .../038-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libquadmath0:amd64.
580s Preparing to unpack .../039-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
580s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
580s Selecting previously unselected package libgcc-13-dev:amd64.
580s Preparing to unpack .../040-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
580s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
580s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
580s Preparing to unpack .../041-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
580s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
580s Selecting previously unselected package gcc-13.
580s Preparing to unpack .../042-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
580s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
580s Selecting previously unselected package gcc-x86-64-linux-gnu.
580s Preparing to unpack .../043-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
580s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
580s Selecting previously unselected package gcc.
580s Preparing to unpack .../044-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
580s Unpacking gcc (4:13.2.0-7ubuntu1) ...
580s Selecting previously unselected package libstdc++-13-dev:amd64.
580s Preparing to unpack .../045-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
580s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
581s Selecting previously unselected package g++-13-x86-64-linux-gnu.
581s Preparing to unpack .../046-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
581s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
581s Selecting previously unselected package g++-13.
581s Preparing to unpack .../047-g++-13_13.2.0-17ubuntu2_amd64.deb ...
581s Unpacking g++-13 (13.2.0-17ubuntu2) ...
581s Selecting previously unselected package g++-x86-64-linux-gnu.
581s Preparing to unpack .../048-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
581s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
581s Selecting previously unselected package g++.
581s Preparing to unpack .../049-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
581s Unpacking g++ (4:13.2.0-7ubuntu1) ...
581s Selecting previously unselected package build-essential.
581s Preparing to unpack .../050-build-essential_12.10ubuntu1_amd64.deb ...
581s Unpacking build-essential (12.10ubuntu1) ...
581s Selecting previously unselected package fonts-dejavu-extra.
581s Preparing to unpack .../051-fonts-dejavu-extra_2.37-8_all.deb ...
581s Unpacking fonts-dejavu-extra (2.37-8) ...
581s Selecting previously unselected package fonts-lyx.
581s Preparing to unpack .../052-fonts-lyx_2.4.0~RC3-1_all.deb ...
581s Unpacking fonts-lyx (2.4.0~RC3-1) ...
581s Selecting previously unselected package libaec0:amd64.
581s Preparing to unpack .../053-libaec0_1.1.2-1_amd64.deb ...
581s Unpacking libaec0:amd64 (1.1.2-1) ...
581s Selecting previously unselected package libblas3:amd64.
581s Preparing to unpack .../054-libblas3_3.12.0-3_amd64.deb ...
581s Unpacking libblas3:amd64 (3.12.0-3) ...
581s Selecting previously unselected package libpixman-1-0:amd64.
581s Preparing to unpack .../055-libpixman-1-0_0.42.2-1_amd64.deb ...
581s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
581s Selecting previously unselected package libxcb-render0:amd64.
581s Preparing to unpack .../056-libxcb-render0_1.15-1_amd64.deb ...
581s Unpacking libxcb-render0:amd64 (1.15-1) ...
581s Selecting previously unselected package libxcb-shm0:amd64.
581s Preparing to unpack .../057-libxcb-shm0_1.15-1_amd64.deb ...
581s Unpacking libxcb-shm0:amd64 (1.15-1) ...
581s Selecting previously unselected package libcairo2:amd64.
581s Preparing to unpack .../058-libcairo2_1.18.0-1_amd64.deb ...
581s Unpacking libcairo2:amd64 (1.18.0-1) ...
581s Selecting previously unselected package libdeflate0:amd64.
581s Preparing to unpack .../059-libdeflate0_1.19-1_amd64.deb ...
581s Unpacking libdeflate0:amd64 (1.19-1) ...
581s Selecting previously unselected package libgfortran5:amd64.
581s Preparing to unpack .../060-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
581s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
581s Selecting previously unselected package libgraphite2-3:amd64.
581s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_amd64.deb ...
581s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
581s Selecting previously unselected package libharfbuzz0b:amd64.
581s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_amd64.deb ...
581s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
581s Selecting previously unselected package libsz2:amd64.
581s Preparing to unpack .../063-libsz2_1.1.2-1_amd64.deb ...
581s Unpacking libsz2:amd64 (1.1.2-1) ...
581s Selecting previously unselected package libhdf5-103-1:amd64.
581s Preparing to unpack .../064-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ...
581s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ...
581s Selecting previously unselected package libhdf5-hl-100:amd64.
581s Preparing to unpack .../065-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ...
581s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ...
582s Selecting previously unselected package libhtscodecs2:amd64.
582s Preparing to unpack .../066-libhtscodecs2_1.6.0-1_amd64.deb ...
582s Unpacking libhtscodecs2:amd64 (1.6.0-1) ...
582s Selecting previously unselected package libhts3:amd64.
582s Preparing to unpack .../067-libhts3_1.18+ds-1_amd64.deb ...
582s Unpacking libhts3:amd64 (1.18+ds-1) ...
582s Selecting previously unselected package libimagequant0:amd64.
582s Preparing to unpack .../068-libimagequant0_2.18.0-1_amd64.deb ...
582s Unpacking libimagequant0:amd64 (2.18.0-1) ...
582s Selecting previously unselected package libjpeg-turbo8:amd64.
582s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
582s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
582s Selecting previously unselected package libjpeg8:amd64.
582s Preparing to unpack .../070-libjpeg8_8c-2ubuntu11_amd64.deb ...
582s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
582s Selecting previously unselected package libjs-jquery.
582s Preparing to unpack .../071-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
582s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
582s Selecting previously unselected package libjs-jquery-ui.
582s Preparing to unpack .../072-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
582s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
582s Selecting previously unselected package liblapack3:amd64.
582s Preparing to unpack .../073-liblapack3_3.12.0-3_amd64.deb ...
582s Unpacking liblapack3:amd64 (3.12.0-3) ...
582s Selecting previously unselected package liblbfgsb0:amd64.
582s Preparing to unpack .../074-liblbfgsb0_3.0+dfsg.4-1_amd64.deb ...
582s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1) ...
582s Selecting previously unselected package liblcms2-2:amd64.
582s Preparing to unpack .../075-liblcms2-2_2.14-2_amd64.deb ...
582s Unpacking liblcms2-2:amd64 (2.14-2) ...
582s Selecting previously unselected package liblerc4:amd64.
582s Preparing to unpack .../076-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
582s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
582s Selecting previously unselected package liblzf1:amd64.
582s Preparing to unpack .../077-liblzf1_3.6-4_amd64.deb ...
582s Unpacking liblzf1:amd64 (3.6-4) ...
582s Selecting previously unselected package libqhull-r8.0:amd64.
582s Preparing to unpack .../078-libqhull-r8.0_2020.2-6_amd64.deb ...
582s Unpacking libqhull-r8.0:amd64 (2020.2-6) ...
582s Selecting previously unselected package libraqm0:amd64.
582s Preparing to unpack .../079-libraqm0_0.10.1-1_amd64.deb ...
582s Unpacking libraqm0:amd64 (0.10.1-1) ...
582s Selecting previously unselected package libsharpyuv0:amd64.
582s Preparing to unpack .../080-libsharpyuv0_1.3.2-0.4_amd64.deb ...
582s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ...
582s Selecting previously unselected package libjbig0:amd64.
582s Preparing to unpack .../081-libjbig0_2.1-6.1ubuntu1_amd64.deb ...
582s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ...
582s Selecting previously unselected package libwebp7:amd64.
582s Preparing to unpack .../082-libwebp7_1.3.2-0.4_amd64.deb ...
582s Unpacking libwebp7:amd64 (1.3.2-0.4) ...
582s Selecting previously unselected package libtiff6:amd64.
582s Preparing to unpack .../083-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
582s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
582s Selecting previously unselected package libwebpdemux2:amd64.
582s Preparing to unpack .../084-libwebpdemux2_1.3.2-0.4_amd64.deb ...
582s Unpacking libwebpdemux2:amd64 (1.3.2-0.4) ...
582s Selecting previously unselected package libwebpmux3:amd64.
582s Preparing to unpack .../085-libwebpmux3_1.3.2-0.4_amd64.deb ...
582s Unpacking libwebpmux3:amd64 (1.3.2-0.4) ...
582s Selecting previously unselected package libxslt1.1:amd64.
582s Preparing to unpack .../086-libxslt1.1_1.1.35-1_amd64.deb ...
582s Unpacking libxslt1.1:amd64 (1.1.35-1) ...
582s Selecting previously unselected package python3-joblib.
582s Preparing to unpack .../087-python3-joblib_1.3.2-1_all.deb ...
582s Unpacking python3-joblib (1.3.2-1) ...
582s Selecting previously unselected package python3-numpy.
582s Preparing to unpack .../088-python3-numpy_1%3a1.24.2-2_amd64.deb ...
582s Unpacking python3-numpy (1:1.24.2-2) ...
583s Selecting previously unselected package python3-decorator.
583s Preparing to unpack .../089-python3-decorator_5.1.1-5_all.deb ...
583s Unpacking python3-decorator (5.1.1-5) ...
583s Selecting previously unselected package python3-scipy.
583s Preparing to unpack .../090-python3-scipy_1.11.4-6_amd64.deb ...
583s Unpacking python3-scipy (1.11.4-6) ...
583s Selecting previously unselected package python3-threadpoolctl.
583s Preparing to unpack .../091-python3-threadpoolctl_3.1.0-1_all.deb ...
583s Unpacking python3-threadpoolctl (3.1.0-1) ...
583s Selecting previously unselected package python3-sklearn-lib:amd64.
583s Preparing to unpack .../092-python3-sklearn-lib_1.4.1.post1+dfsg-1_amd64.deb ...
583s Unpacking python3-sklearn-lib:amd64 (1.4.1.post1+dfsg-1) ...
583s Selecting previously unselected package python3-sklearn.
583s Preparing to unpack .../093-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ...
583s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ...
584s Selecting previously unselected package python3-h5py-serial.
584s Preparing to unpack .../094-python3-h5py-serial_3.10.0-1ubuntu1_amd64.deb ...
584s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ...
584s Selecting previously unselected package python3-h5py.
584s Preparing to unpack .../095-python3-h5py_3.10.0-1ubuntu1_all.deb ...
584s Unpacking python3-h5py (3.10.0-1ubuntu1) ...
584s Selecting previously unselected package python3-tk:amd64.
584s Preparing to unpack .../096-python3-tk_3.11.5-1_amd64.deb ...
584s Unpacking python3-tk:amd64 (3.11.5-1) ...
584s Selecting previously unselected package python3-pil.imagetk:amd64.
584s Preparing to unpack .../097-python3-pil.imagetk_10.2.0-1_amd64.deb ...
584s Unpacking python3-pil.imagetk:amd64 (10.2.0-1) ...
584s Selecting previously unselected package libopenjp2-7:amd64.
584s Preparing to unpack .../098-libopenjp2-7_2.5.0-2_amd64.deb ...
584s Unpacking libopenjp2-7:amd64 (2.5.0-2) ...
584s Selecting previously unselected package python3-pil:amd64.
584s Preparing to unpack .../099-python3-pil_10.2.0-1_amd64.deb ...
584s Unpacking python3-pil:amd64 (10.2.0-1) ...
584s Selecting previously unselected package python3-cairo.
584s Preparing to unpack .../100-python3-cairo_1.25.1-2_amd64.deb ...
584s Unpacking python3-cairo (1.25.1-2) ...
584s Selecting previously unselected package python3-freetype.
584s Preparing to unpack .../101-python3-freetype_2.4.0-1_all.deb ...
584s Unpacking python3-freetype (2.4.0-1) ...
584s Selecting previously unselected package python3-rlpycairo.
584s Preparing to unpack .../102-python3-rlpycairo_0.3.0-3_all.deb ...
584s Unpacking python3-rlpycairo (0.3.0-3) ...
584s Selecting previously unselected package python3-reportlab.
584s Preparing to unpack .../103-python3-reportlab_4.1.0-1_all.deb ...
584s Unpacking python3-reportlab (4.1.0-1) ...
584s Selecting previously unselected package xml-core.
584s Preparing to unpack .../104-xml-core_0.19_all.deb ...
584s Unpacking xml-core (0.19) ...
584s Selecting previously unselected package w3c-sgml-lib.
584s Preparing to unpack .../105-w3c-sgml-lib_1.3-3_all.deb ...
584s Unpacking w3c-sgml-lib (1.3-3) ...
584s Selecting previously unselected package python3-biopython.
584s Preparing to unpack .../106-python3-biopython_1.81+dfsg-3_amd64.deb ...
584s Unpacking python3-biopython (1.81+dfsg-3) ...
584s Selecting previously unselected package python-matplotlib-data.
584s Preparing to unpack .../107-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ...
584s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ...
584s Selecting previously unselected package python3-dateutil.
584s Preparing to unpack .../108-python3-dateutil_2.8.2-3_all.deb ...
584s Unpacking python3-dateutil (2.8.2-3) ...
584s Selecting previously unselected package python3-contourpy.
584s Preparing to unpack .../109-python3-contourpy_1.0.7-1build2_amd64.deb ...
584s Unpacking python3-contourpy (1.0.7-1build2) ...
584s Selecting previously unselected package python3-cycler.
585s Preparing to unpack .../110-python3-cycler_0.11.0-2_all.deb ...
585s Unpacking python3-cycler (0.11.0-2) ...
585s Selecting previously unselected package python3-brotli.
585s Preparing to unpack .../111-python3-brotli_1.1.0-2_amd64.deb ...
585s Unpacking python3-brotli (1.1.0-2) ...
585s Selecting previously unselected package python3-ufolib2.
585s Preparing to unpack .../112-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
585s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
585s Selecting previously unselected package python3-mpmath.
585s Preparing to unpack .../113-python3-mpmath_1.2.1-3_all.deb ...
585s Unpacking python3-mpmath (1.2.1-3) ...
585s Selecting previously unselected package python3-sympy.
585s Preparing to unpack .../114-python3-sympy_1.12-7_all.deb ...
585s Unpacking python3-sympy (1.12-7) ...
585s Selecting previously unselected package python3-appdirs.
585s Preparing to unpack .../115-python3-appdirs_1.4.4-4_all.deb ...
585s Unpacking python3-appdirs (1.4.4-4) ...
585s Selecting previously unselected package python3-fs.
585s Preparing to unpack .../116-python3-fs_2.4.16-3_all.deb ...
585s Unpacking python3-fs (2.4.16-3) ...
585s Selecting previously unselected package python3-lxml:amd64.
585s Preparing to unpack .../117-python3-lxml_5.1.0-1_amd64.deb ...
585s Unpacking python3-lxml:amd64 (5.1.0-1) ...
585s Selecting previously unselected package python3-lz4.
585s Preparing to unpack .../118-python3-lz4_4.0.2+dfsg-1build2_amd64.deb ...
585s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ...
585s Selecting previously unselected package python3-unicodedata2.
585s Preparing to unpack .../119-python3-unicodedata2_15.1.0+ds-1_amd64.deb ...
585s Unpacking python3-unicodedata2 (15.1.0+ds-1) ...
585s Selecting previously unselected package unicode-data.
585s Preparing to unpack .../120-unicode-data_15.1.0-1_all.deb ...
585s Unpacking unicode-data (15.1.0-1) ...
585s Selecting previously unselected package python3-fonttools.
585s Preparing to unpack .../121-python3-fonttools_4.46.0-1_amd64.deb ...
585s Unpacking python3-fonttools (4.46.0-1) ...
586s Selecting previously unselected package python3-kiwisolver.
586s Preparing to unpack .../122-python3-kiwisolver_1.4.4-1build2_amd64.deb ...
586s Unpacking python3-kiwisolver (1.4.4-1build2) ...
586s Selecting previously unselected package python3-packaging.
586s Preparing to unpack .../123-python3-packaging_23.2-1_all.deb ...
586s Unpacking python3-packaging (23.2-1) ...
586s Selecting previously unselected package python3-matplotlib.
586s Preparing to unpack .../124-python3-matplotlib_3.6.3-1ubuntu3_amd64.deb ...
586s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ...
586s Selecting previously unselected package python3-pandas-lib:amd64.
586s Preparing to unpack .../125-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_amd64.deb ...
586s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ...
586s Selecting previously unselected package python3-pandas.
586s Preparing to unpack .../126-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ...
586s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ...
586s Selecting previously unselected package python3-seaborn.
586s Preparing to unpack .../127-python3-seaborn_0.13.2-2_all.deb ...
586s Unpacking python3-seaborn (0.13.2-2) ...
586s Selecting previously unselected package python3-pysam.
586s Preparing to unpack .../128-python3-pysam_0.22.0+ds-1_amd64.deb ...
586s Unpacking python3-pysam (0.22.0+ds-1) ...
587s Selecting previously unselected package mcaller.
587s Preparing to unpack .../129-mcaller_1.0.3+git20210624.b415090-3_all.deb ...
587s Unpacking mcaller (1.0.3+git20210624.b415090-3) ...
587s Setting up libhtscodecs2:amd64 (1.6.0-1) ...
587s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
587s Setting up liblcms2-2:amd64 (2.14-2) ...
587s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
587s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
587s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
587s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
587s Setting up python3-joblib (1.3.2-1) ...
587s Setting up python3-lz4 (4.0.2+dfsg-1build2) ...
587s Setting up libxcb-render0:amd64 (1.15-1) ...
587s Setting up python3-unicodedata2 (15.1.0+ds-1) ...
587s Setting up fonts-lyx (2.4.0~RC3-1) ...
587s Setting up python3-threadpoolctl (3.1.0-1) ...
587s Setting up x11-common (1:7.7+23ubuntu2) ...
588s Setting up libdeflate0:amd64 (1.19-1) ...
588s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
588s Setting up libqhull-r8.0:amd64 (2020.2-6) ...
588s Setting up libxcb-shm0:amd64 (1.15-1) ...
588s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
588s Setting up python3-freetype (2.4.0-1) ...
588s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
588s Setting up libaec0:amd64 (1.1.2-1) ...
588s Setting up unicode-data (15.1.0-1) ...
588s Setting up python3-decorator (5.1.1-5) ...
588s Setting up libfontenc1:amd64 (1:1.1.8-1) ...
588s Setting up libblas3:amd64 (3.12.0-3) ...
588s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
588s Setting up python3-packaging (23.2-1) ...
588s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
588s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
588s Setting up python3-brotli (1.1.0-2) ...
588s Setting up liblzf1:amd64 (3.6-4) ...
588s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
588s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
588s Setting up python3-cycler (0.11.0-2) ...
588s Setting up libimagequant0:amd64 (2.18.0-1) ...
588s Setting up fonts-dejavu-mono (2.37-8) ...
588s Setting up python3-kiwisolver (1.4.4-1build2) ...
588s Setting up libmpc3:amd64 (1.3.1-1) ...
588s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
588s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ...
588s Setting up fonts-dejavu-core (2.37-8) ...
588s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
588s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
588s Setting up libwebp7:amd64 (1.3.2-0.4) ...
588s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
588s Setting up fonts-dejavu-extra (2.37-8) ...
588s Setting up libnsl-dev:amd64 (1.3.0-3) ...
588s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
588s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
588s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
588s Setting up libxslt1.1:amd64 (1.1.35-1) ...
588s Setting up libopenjp2-7:amd64 (2.5.0-2) ...
588s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
588s Setting up python3-dateutil (2.8.2-3) ...
589s Setting up sgml-base (1.31) ...
589s Setting up libxss1:amd64 (1:1.2.3-1build2) ...
589s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
589s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
589s Setting up python3-mpmath (1.2.1-3) ...
589s Setting up libisl23:amd64 (0.26-3) ...
589s Setting up libc-dev-bin (2.39-0ubuntu2) ...
589s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ...
589s Setting up libwebpmux3:amd64 (1.3.2-0.4) ...
589s Setting up python3-appdirs (1.4.4-4) ...
589s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
589s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
589s Setting up libsz2:amd64 (1.1.2-1) ...
589s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
589s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
589s Setting up python3-sympy (1.12-7) ...
594s Setting up liblapack3:amd64 (3.12.0-3) ...
594s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
594s Setting up libhts3:amd64 (1.18+ds-1) ...
594s Setting up python3-pysam (0.22.0+ds-1) ...
594s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
594s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
594s Setting up libwebpdemux2:amd64 (1.3.2-0.4) ...
594s Setting up xfonts-utils (1:7.7+6build2) ...
594s Setting up python3-fs (2.4.16-3) ...
594s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
594s Setting up libraqm0:amd64 (0.10.1-1) ...
594s Setting up python3-numpy (1:1.24.2-2) ...
596s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ...
596s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
596s Setting up python3-lxml:amd64 (5.1.0-1) ...
596s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
596s Setting up xml-core (0.19) ...
596s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
596s Setting up python3-contourpy (1.0.7-1build2) ...
596s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
596s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
596s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ...
596s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ...
596s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
596s Setting up libxft2:amd64 (2.3.6-1) ...
596s Setting up python3-scipy (1.11.4-6) ...
599s Setting up cpp-13 (13.2.0-17ubuntu2) ...
599s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
599s Setting up libtk8.6:amd64 (8.6.13-2) ...
599s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ...
599s Setting up python3-sklearn-lib:amd64 (1.4.1.post1+dfsg-1) ...
599s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ...
599s Setting up fonts-urw-base35 (20200910-8) ...
599s Setting up libcairo2:amd64 (1.18.0-1) ...
599s Setting up python3-pil:amd64 (10.2.0-1) ...
599s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
603s Setting up python3-h5py (3.10.0-1ubuntu1) ...
603s Setting up gcc-13 (13.2.0-17ubuntu2) ...
603s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ...
605s Setting up cpp (4:13.2.0-7ubuntu1) ...
605s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
605s Setting up python3-cairo (1.25.1-2) ...
605s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
605s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
605s Setting up blt (2.5.3+dfsg-7) ...
605s Setting up python3-tk:amd64 (3.11.5-1) ...
605s Setting up gcc (4:13.2.0-7ubuntu1) ...
605s Setting up python3-pil.imagetk:amd64 (10.2.0-1) ...
605s Setting up python3-rlpycairo (0.3.0-3) ...
605s Setting up python3-reportlab (4.1.0-1) ...
606s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
606s Setting up g++-13 (13.2.0-17ubuntu2) ...
606s Setting up g++ (4:13.2.0-7ubuntu1) ...
606s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
606s Setting up build-essential (12.10ubuntu1) ...
606s Setting up python3-fonttools (4.46.0-1) ...
607s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
607s Setting up python3-matplotlib (3.6.3-1ubuntu3) ...
608s Setting up python3-seaborn (0.13.2-2) ...
608s Processing triggers for man-db (2.12.0-3) ...
610s Processing triggers for libc-bin (2.39-0ubuntu2) ...
610s Processing triggers for sgml-base (1.31) ...
610s Setting up w3c-sgml-lib (1.3-3) ...
636s Setting up python3-biopython (1.81+dfsg-3) ...
637s Setting up mcaller (1.0.3+git20210624.b415090-3) ...
640s Reading package lists...
640s Building dependency tree...
640s Reading state information...
640s Starting pkgProblemResolver with broken count: 0
640s Starting 2 pkgProblemResolver with broken count: 0
640s Done
640s The following NEW packages will be installed:
640s   autopkgtest-satdep
640s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
640s Need to get 0 B/696 B of archives.
640s After this operation, 0 B of additional disk space will be used.
640s Get:1 /tmp/autopkgtest.OqTEAt/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B]
641s Selecting previously unselected package autopkgtest-satdep.
641s (Reading database ... 
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641s Preparing to unpack .../2-autopkgtest-satdep.deb ...
641s Unpacking autopkgtest-satdep (0) ...
641s Setting up autopkgtest-satdep (0) ...
642s (Reading database ... 86720 files and directories currently installed.)
642s Removing autopkgtest-satdep (0) ...
643s autopkgtest [12:32:32]: test run-unit-test: [-----------------------
644s testdata/
644s 1 contigs
644s 1 threads
644s thread finished processing...:
644s 35 observations
644s 35 positions
644s 0 regions with multiple methylated bases
644s 0 observations with skips included
644s 8 observations with too many skips
644s Finished extracting signals
645s testdata/
645s 1 contigs
645s 1 threads
645s thread finished processing...:
645s 9 observations
645s 9 positions
645s 0 regions with multiple methylated bases
645s 0 observations with skips included
645s 2 observations with too many skips
645s Finished extracting signals
645s testdata/
645s 1 contigs
645s 4 threads
646s thread finished processing...:
646s 9 observations
646s 9 positions
646s 0 regions with multiple methylated bases
646s 0 observations with skips included
646s 4 observations with too many skips
646s Error: could not find sequence for reference contig li
646s thread finished processing...:
646s 16 observations
646s 16 positions
646s 0 regions with multiple methylated bases
646s 0 observations with skips included
646s 6 observations with too many skips
646s thread finished processing...:
646s 28 observations
646s 28 positions
646s 0 regions with multiple methylated bases
646s 0 observations with skips included
646s 6 observations with too many skips
646s thread finished processing...:
646s 44 observations
646s 44 positions
646s 1 regions with multiple methylated bases
646s 0 observations with skips included
646s 10 observations with too many skips
647s Finished extracting signals
647s Merging files...
647s Training...
647s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A']
647s [[-0.18999999999999992, -1.6799999999999997, -2.3, 0.56, -1.41, 1.48, 7.055265349382997], [-1.1300000000000001, -1.67, -1.1, -0.5774999999999999, 0.42, 1.0225, 7.055265349382997], [0.0050000000000000044, -0.29500000000000004, -0.54, 3.96, 1.47, 0.06499999999999995, 7.055265349382997], [3.255, 3.925, 0.03999999999999998, -0.15599999999999997, -1.01, 1.3533333333333333, 7.055265349382997], [-0.07999999999999996, -1.3666666666666665, 0.84, -0.5449999999999999, -3.22, -1.53, 7.055265349382997], [-1.74, -2.56, -2.0774999999999997, 1.84, -0.09999999999999998, -0.3, 7.055265349382997], [1.92, 2.75, 1.59, 1.6433333333333333, 1.59, 1.27, 7.055265349382997], [-2.15, 1.8849999999999998, 2.58, -0.36, 4.26, -2.4625, 7.055265349382997], [1.485, 4.095000000000001, -1.12, -0.91, -0.62, 1.17, 7.055265349382997], [1.095, 0.78, -2.38, 1.47, -1.7149999999999999, -0.8283333333333335, 7.055265349382997]]
647s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AGGCCMTTCAA', 'AATCAMAAGAA', 'TACTTMCCGCA']
647s NN general model scores: 0.875,0.375,0.25,0.75,0.875
647s Cross validation accuracy: 0.62 (+/- 0.52)
647s Finished training
647s PASS
647s autopkgtest [12:32:36]: test run-unit-test: -----------------------]
647s run-unit-test        PASS
647s autopkgtest [12:32:36]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
647s autopkgtest [12:32:36]: @@@@@@@@@@@@@@@@@@@@ summary
647s run-unit-test        PASS
657s Creating nova instance adt-noble-i386-mcaller-20240321-114848-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240320.img (UUID 3219a3f4-90ea-47d9-8dfb-3912f2ae9f95)...