0s autopkgtest [18:13:22]: starting date and time: 2024-03-24 18:13:22+0000
  0s autopkgtest [18:13:22]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [18:13:22]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ig7du1e8/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=sra-sdk/3.0.3+dfsg-6ubuntu4 samtools/1.19.2-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-30.secgroup --name adt-noble-i386-htsjdk-20240324-181322-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
779s autopkgtest [18:26:21]: testbed dpkg architecture: amd64
779s autopkgtest [18:26:21]: testbed apt version: 2.7.12
779s autopkgtest [18:26:21]: test architecture: i386
779s autopkgtest [18:26:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup
779s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
779s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
779s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB]
779s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB]
780s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
780s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [488 kB]
780s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [727 kB]
780s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
780s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
780s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
780s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
780s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1300 kB]
780s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4419 kB]
780s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
780s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.4 kB]
780s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.4 kB]
780s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
783s Fetched 11.8 MB in 2s (7842 kB/s)
783s Reading package lists...
785s Reading package lists...
785s Building dependency tree...
785s Reading state information...
785s Calculating upgrade...
786s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
786s Reading package lists...
786s Building dependency tree...
786s Reading state information...
786s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded.
787s sh: Attempting to set up Debian/Ubuntu apt sources automatically
787s sh: Distribution appears to be Ubuntu
788s Reading package lists...
788s Building dependency tree...
788s Reading state information...
788s eatmydata is already the newest version (131-1).
788s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
788s Reading package lists...
789s Building dependency tree...
789s Reading state information...
789s dbus is already the newest version (1.14.10-4ubuntu1).
789s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
789s Reading package lists...
789s Building dependency tree...
789s Reading state information...
789s rng-tools-debian is already the newest version (2.4).
789s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
790s Reading package lists...
790s Building dependency tree...
790s Reading state information...
790s The following packages will be REMOVED:
790s   cloud-init* python3-configobj* python3-debconf*
790s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
790s After this operation, 3256 kB disk space will be freed.
791s (Reading database ... 
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(Reading database ... 10%
(Reading database ... 15%
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
791s Removing cloud-init (24.1.2-0ubuntu1) ...
791s Removing python3-configobj (5.0.8-3) ...
791s Removing python3-debconf (1.5.86) ...
791s Processing triggers for man-db (2.12.0-3) ...
792s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
792s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
792s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
792s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
792s invoke-rc.d: policy-rc.d denied execution of try-restart.
793s Reading package lists...
793s Building dependency tree...
793s Reading state information...
793s linux-generic is already the newest version (6.8.0-11.11+1).
793s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
793s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
793s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
793s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
795s Reading package lists...
795s Reading package lists...
796s Building dependency tree...
796s Reading state information...
796s Calculating upgrade...
796s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
796s Reading package lists...
797s Building dependency tree...
797s Reading state information...
797s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
797s autopkgtest [18:26:39]: rebooting testbed after setup commands that affected boot
940s autopkgtest [18:29:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
940s autopkgtest [18:29:02]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk
942s Get:1 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (dsc) [2649 B]
942s Get:2 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (tar) [46.9 MB]
942s Get:3 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (diff) [39.4 kB]
942s gpgv: Signature made Sun Feb 11 21:45:33 2024 UTC
942s gpgv:                using RSA key 33CB284313E90BD27DCB4523600316A6DC277476
942s gpgv: Can't check signature: No public key
942s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-1.dsc: no acceptable signature found
943s autopkgtest [18:29:05]: testing package htsjdk version 4.1.0+dfsg-1
944s autopkgtest [18:29:06]: build not needed
945s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s command1             SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s autopkgtest [18:29:07]: @@@@@@@@@@@@@@@@@@@@ summary
945s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s command1             SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
945s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
956s Creating nova instance adt-noble-i386-htsjdk-20240324-181322-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240324.img (UUID 4e56ccec-954f-4884-8b9c-3e1a29e50308)...