0s autopkgtest [00:33:23]: starting date and time: 2024-03-22 00:33:23+0000 0s autopkgtest [00:33:23]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [00:33:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wzid1sr3/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade assemblytics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-69.secgroup --name adt-noble-i386-assemblytics-20240322-003323-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 790s autopkgtest [00:46:33]: testbed dpkg architecture: amd64 790s autopkgtest [00:46:33]: testbed apt version: 2.7.12 790s autopkgtest [00:46:33]: test architecture: i386 790s autopkgtest [00:46:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 790s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 791s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 791s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3765 kB] 791s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 791s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB] 791s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB] 791s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB] 791s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 791s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 791s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 791s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 791s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1271 kB] 791s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4237 kB] 791s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 791s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB] 791s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB] 791s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 794s Fetched 11.3 MB in 1s (7583 kB/s) 794s Reading package lists... 796s Reading package lists... 797s Building dependency tree... 797s Reading state information... 797s Calculating upgrade... 797s The following packages will be upgraded: 797s cloud-init fonts-ubuntu-console python3-markupsafe 797s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 797s Need to get 629 kB of archives. 797s After this operation, 11.3 kB disk space will be freed. 797s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 797s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB] 797s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB] 798s Preconfiguring packages ... 798s Fetched 629 kB in 0s (20.8 MB/s) 798s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 798s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 798s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 798s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ... 798s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 798s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ... 799s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 799s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 799s Setting up cloud-init (24.1.2-0ubuntu1) ... 800s Setting up python3-markupsafe (2.1.5-1build1) ... 800s Processing triggers for man-db (2.12.0-3) ... 801s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 801s Reading package lists... 801s Building dependency tree... 801s Reading state information... 802s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 802s sh: Attempting to set up Debian/Ubuntu apt sources automatically 802s sh: Distribution appears to be Ubuntu 803s Reading package lists... 803s Building dependency tree... 803s Reading state information... 804s eatmydata is already the newest version (131-1). 804s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 804s Reading package lists... 804s Building dependency tree... 804s Reading state information... 804s dbus is already the newest version (1.14.10-4ubuntu1). 804s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 804s Reading package lists... 805s Building dependency tree... 805s Reading state information... 805s rng-tools-debian is already the newest version (2.4). 805s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 805s Reading package lists... 805s Building dependency tree... 805s Reading state information... 805s The following packages will be REMOVED: 805s cloud-init* python3-configobj* python3-debconf* 806s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 806s After this operation, 3256 kB disk space will be freed. 806s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 806s Removing cloud-init (24.1.2-0ubuntu1) ... 806s Removing python3-configobj (5.0.8-3) ... 806s Removing python3-debconf (1.5.86) ... 806s Processing triggers for man-db (2.12.0-3) ... 807s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 807s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 807s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 807s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 807s invoke-rc.d: policy-rc.d denied execution of try-restart. 807s Reading package lists... 808s Building dependency tree... 808s Reading state information... 808s linux-generic is already the newest version (6.8.0-11.11+1). 808s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 808s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 808s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 808s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 810s Reading package lists... 810s Reading package lists... 811s Building dependency tree... 811s Reading state information... 811s Calculating upgrade... 811s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 811s Reading package lists... 811s Building dependency tree... 811s Reading state information... 812s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 812s autopkgtest [00:46:55]: rebooting testbed after setup commands that affected boot 834s autopkgtest [00:47:17]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 835s autopkgtest [00:47:18]: @@@@@@@@@@@@@@@@@@@@ apt-source assemblytics 836s Get:1 http://ftpmaster.internal/ubuntu noble/universe assemblytics 1.2.1+dfsg-2 (dsc) [2072 B] 836s Get:2 http://ftpmaster.internal/ubuntu noble/universe assemblytics 1.2.1+dfsg-2 (tar) [15.5 kB] 836s Get:3 http://ftpmaster.internal/ubuntu noble/universe assemblytics 1.2.1+dfsg-2 (diff) [4640 B] 836s gpgv: Signature made Wed Dec 6 13:41:32 2023 UTC 836s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 836s gpgv: issuer "tillea@rki.de" 836s gpgv: Can't check signature: No public key 836s dpkg-source: warning: cannot verify inline signature for ./assemblytics_1.2.1+dfsg-2.dsc: no acceptable signature found 836s autopkgtest [00:47:19]: testing package assemblytics version 1.2.1+dfsg-2 836s autopkgtest [00:47:19]: build not needed 836s autopkgtest [00:47:19]: test run-unit-test: preparing testbed 838s Note, using file '/tmp/autopkgtest.A346B0/1-autopkgtest-satdep.dsc' to get the build dependencies 838s Reading package lists... 839s Building dependency tree... 839s Reading state information... 839s Starting pkgProblemResolver with broken count: 0 839s Starting 2 pkgProblemResolver with broken count: 0 839s Done 839s The following NEW packages will be installed: 839s assemblytics build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu 839s cpp-x86-64-linux-gnu fontconfig fontconfig-config fonts-dejavu-core 839s fonts-dejavu-mono g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu 839s gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libatomic1 839s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 839s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 839s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libisl23 libitm1 libjbig0 839s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 liblsan0 libmpc3 libnsl-dev 839s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 839s libpaper1 libpixman-1-0 libquadmath0 libsharpyuv0 libsm6 libstdc++-13-dev 839s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 839s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 839s libxt6 linux-libc-dev littler python-is-python3 python3-all python3-numpy 839s r-base-core r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver 839s r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-isoband r-cran-labeling 839s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 839s r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar 839s r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer 839s r-cran-rcpp r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 839s r-cran-vctrs r-cran-viridislite r-cran-withr rpcsvc-proto unzip x11-common 839s xdg-utils zip 839s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 839s Need to get 143 MB of archives. 839s After this operation, 422 MB of additional disk space will be used. 839s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 839s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 839s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 839s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 840s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 840s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 840s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 840s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 840s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 840s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 840s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 840s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 840s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 840s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 840s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 840s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 840s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 840s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 840s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 840s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 840s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 840s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 840s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 840s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 840s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 840s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 840s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 840s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 840s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 840s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 840s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 840s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 840s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 840s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 840s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 840s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 840s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 840s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 840s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 840s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 840s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] 840s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 840s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 840s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 840s Get:45 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 840s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 840s Get:47 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 840s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 840s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 840s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 840s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 840s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 840s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 840s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.164-1 [2260 kB] 840s Get:55 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 840s Get:56 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 840s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] 840s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 840s Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] 840s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] 840s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 840s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 840s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 840s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 840s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 840s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 840s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 840s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 840s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 840s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 840s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 840s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 840s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 840s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 840s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 840s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 840s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 840s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 840s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 assemblytics all 1.2.1+dfsg-2 [19.1 kB] 840s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB] 840s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 840s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 840s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB] 840s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] 840s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 840s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB] 840s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 840s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 840s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 840s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 840s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 840s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 840s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 840s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 840s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 840s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 840s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 840s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 840s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 840s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 840s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 840s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 840s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 840s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 840s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 840s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 840s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 840s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 841s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 841s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 841s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 841s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 841s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 python-is-python3 all 3.11.4-1 [2684 B] 841s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 python3-all amd64 3.12.1-0ubuntu2 [906 B] 841s Preconfiguring packages ... 841s Fetched 143 MB in 1s (126 MB/s) 841s Selecting previously unselected package libblas3:amd64. 841s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 841s Preparing to unpack .../000-libblas3_3.12.0-3_amd64.deb ... 841s Unpacking libblas3:amd64 (3.12.0-3) ... 841s Selecting previously unselected package libgfortran5:amd64. 841s Preparing to unpack .../001-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 841s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 841s Selecting previously unselected package liblapack3:amd64. 841s Preparing to unpack .../002-liblapack3_3.12.0-3_amd64.deb ... 841s Unpacking liblapack3:amd64 (3.12.0-3) ... 841s Selecting previously unselected package python3-numpy. 841s Preparing to unpack .../003-python3-numpy_1%3a1.24.2-2_amd64.deb ... 841s Unpacking python3-numpy (1:1.24.2-2) ... 842s Selecting previously unselected package zip. 842s Preparing to unpack .../004-zip_3.0-13_amd64.deb ... 842s Unpacking zip (3.0-13) ... 842s Selecting previously unselected package unzip. 842s Preparing to unpack .../005-unzip_6.0-28ubuntu3_amd64.deb ... 842s Unpacking unzip (6.0-28ubuntu3) ... 842s Selecting previously unselected package libpaper1:amd64. 842s Preparing to unpack .../006-libpaper1_1.1.29_amd64.deb ... 842s Unpacking libpaper1:amd64 (1.1.29) ... 842s Selecting previously unselected package libpaper-utils. 842s Preparing to unpack .../007-libpaper-utils_1.1.29_amd64.deb ... 842s Unpacking libpaper-utils (1.1.29) ... 842s Selecting previously unselected package xdg-utils. 842s Preparing to unpack .../008-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 842s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 842s Selecting previously unselected package fonts-dejavu-mono. 842s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ... 842s Unpacking fonts-dejavu-mono (2.37-8) ... 842s Selecting previously unselected package fonts-dejavu-core. 842s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ... 842s Unpacking fonts-dejavu-core (2.37-8) ... 842s Selecting previously unselected package fontconfig-config. 842s Preparing to unpack .../011-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 842s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 842s Selecting previously unselected package libfontconfig1:amd64. 842s Preparing to unpack .../012-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 842s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 842s Selecting previously unselected package libpixman-1-0:amd64. 842s Preparing to unpack .../013-libpixman-1-0_0.42.2-1_amd64.deb ... 842s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 842s Selecting previously unselected package libxcb-render0:amd64. 842s Preparing to unpack .../014-libxcb-render0_1.15-1_amd64.deb ... 842s Unpacking libxcb-render0:amd64 (1.15-1) ... 842s Selecting previously unselected package libxcb-shm0:amd64. 842s Preparing to unpack .../015-libxcb-shm0_1.15-1_amd64.deb ... 842s Unpacking libxcb-shm0:amd64 (1.15-1) ... 842s Selecting previously unselected package libxrender1:amd64. 842s Preparing to unpack .../016-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 842s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 842s Selecting previously unselected package libcairo2:amd64. 842s Preparing to unpack .../017-libcairo2_1.18.0-1_amd64.deb ... 842s Unpacking libcairo2:amd64 (1.18.0-1) ... 842s Selecting previously unselected package libgomp1:amd64. 842s Preparing to unpack .../018-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 842s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 842s Selecting previously unselected package libjpeg-turbo8:amd64. 842s Preparing to unpack .../019-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 842s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 842s Selecting previously unselected package libjpeg8:amd64. 842s Preparing to unpack .../020-libjpeg8_8c-2ubuntu11_amd64.deb ... 842s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 842s Selecting previously unselected package fontconfig. 842s Preparing to unpack .../021-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 842s Unpacking fontconfig (2.15.0-1ubuntu1) ... 842s Selecting previously unselected package libgraphite2-3:amd64. 842s Preparing to unpack .../022-libgraphite2-3_1.3.14-2_amd64.deb ... 842s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 843s Selecting previously unselected package libharfbuzz0b:amd64. 843s Preparing to unpack .../023-libharfbuzz0b_8.3.0-2_amd64.deb ... 843s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 843s Selecting previously unselected package libthai-data. 843s Preparing to unpack .../024-libthai-data_0.1.29-2_all.deb ... 843s Unpacking libthai-data (0.1.29-2) ... 843s Selecting previously unselected package libdatrie1:amd64. 843s Preparing to unpack .../025-libdatrie1_0.2.13-3_amd64.deb ... 843s Unpacking libdatrie1:amd64 (0.2.13-3) ... 843s Selecting previously unselected package libthai0:amd64. 843s Preparing to unpack .../026-libthai0_0.1.29-2_amd64.deb ... 843s Unpacking libthai0:amd64 (0.1.29-2) ... 843s Selecting previously unselected package libpango-1.0-0:amd64. 843s Preparing to unpack .../027-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 843s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 843s Selecting previously unselected package libpangoft2-1.0-0:amd64. 843s Preparing to unpack .../028-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 843s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 843s Selecting previously unselected package libpangocairo-1.0-0:amd64. 843s Preparing to unpack .../029-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 843s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 843s Selecting previously unselected package libtcl8.6:amd64. 843s Preparing to unpack .../030-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 843s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 843s Selecting previously unselected package libdeflate0:amd64. 843s Preparing to unpack .../031-libdeflate0_1.19-1_amd64.deb ... 843s Unpacking libdeflate0:amd64 (1.19-1) ... 843s Selecting previously unselected package libjbig0:amd64. 843s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 843s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 843s Selecting previously unselected package liblerc4:amd64. 843s Preparing to unpack .../033-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 843s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 843s Selecting previously unselected package libsharpyuv0:amd64. 843s Preparing to unpack .../034-libsharpyuv0_1.3.2-0.4_amd64.deb ... 843s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 843s Selecting previously unselected package libwebp7:amd64. 843s Preparing to unpack .../035-libwebp7_1.3.2-0.4_amd64.deb ... 843s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 843s Selecting previously unselected package libtiff6:amd64. 843s Preparing to unpack .../036-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 843s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 843s Selecting previously unselected package libxft2:amd64. 843s Preparing to unpack .../037-libxft2_2.3.6-1_amd64.deb ... 843s Unpacking libxft2:amd64 (2.3.6-1) ... 843s Selecting previously unselected package x11-common. 843s Preparing to unpack .../038-x11-common_1%3a7.7+23ubuntu2_all.deb ... 843s Unpacking x11-common (1:7.7+23ubuntu2) ... 843s Selecting previously unselected package libxss1:amd64. 843s Preparing to unpack .../039-libxss1_1%3a1.2.3-1build2_amd64.deb ... 843s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 843s Selecting previously unselected package libtk8.6:amd64. 843s Preparing to unpack .../040-libtk8.6_8.6.13-2_amd64.deb ... 843s Unpacking libtk8.6:amd64 (8.6.13-2) ... 843s Selecting previously unselected package libice6:amd64. 843s Preparing to unpack .../041-libice6_2%3a1.0.10-1build2_amd64.deb ... 843s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 843s Selecting previously unselected package libsm6:amd64. 843s Preparing to unpack .../042-libsm6_2%3a1.2.3-1build2_amd64.deb ... 843s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 843s Selecting previously unselected package libxt6:amd64. 843s Preparing to unpack .../043-libxt6_1%3a1.2.1-1.1_amd64.deb ... 843s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 843s Selecting previously unselected package r-base-core. 843s Preparing to unpack .../044-r-base-core_4.3.2-1build1_amd64.deb ... 843s Unpacking r-base-core (4.3.2-1build1) ... 843s Selecting previously unselected package r-cran-cli. 843s Preparing to unpack .../045-r-cran-cli_3.6.2-1_amd64.deb ... 843s Unpacking r-cran-cli (3.6.2-1) ... 844s Selecting previously unselected package r-cran-glue. 844s Preparing to unpack .../046-r-cran-glue_1.7.0-1_amd64.deb ... 844s Unpacking r-cran-glue (1.7.0-1) ... 844s Selecting previously unselected package r-cran-rlang. 844s Preparing to unpack .../047-r-cran-rlang_1.1.3-1_amd64.deb ... 844s Unpacking r-cran-rlang (1.1.3-1) ... 844s Selecting previously unselected package r-cran-lifecycle. 844s Preparing to unpack .../048-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 844s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 844s Selecting previously unselected package r-cran-gtable. 844s Preparing to unpack .../049-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 844s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 844s Selecting previously unselected package r-cran-isoband. 844s Preparing to unpack .../050-r-cran-isoband_0.2.7-1_amd64.deb ... 844s Unpacking r-cran-isoband (0.2.7-1) ... 844s Selecting previously unselected package r-cran-mass. 844s Preparing to unpack .../051-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 844s Unpacking r-cran-mass (7.3-60.0.1-1) ... 844s Selecting previously unselected package r-cran-lattice. 844s Preparing to unpack .../052-r-cran-lattice_0.22-5-1_amd64.deb ... 844s Unpacking r-cran-lattice (0.22-5-1) ... 844s Selecting previously unselected package r-cran-nlme. 844s Preparing to unpack .../053-r-cran-nlme_3.1.164-1_amd64.deb ... 844s Unpacking r-cran-nlme (3.1.164-1) ... 844s Selecting previously unselected package r-cran-matrix. 844s Preparing to unpack .../054-r-cran-matrix_1.6-5-1_amd64.deb ... 844s Unpacking r-cran-matrix (1.6-5-1) ... 844s Selecting previously unselected package r-cran-mgcv. 844s Preparing to unpack .../055-r-cran-mgcv_1.9-1-1_amd64.deb ... 844s Unpacking r-cran-mgcv (1.9-1-1) ... 844s Selecting previously unselected package r-cran-farver. 844s Preparing to unpack .../056-r-cran-farver_2.1.1-1_amd64.deb ... 844s Unpacking r-cran-farver (2.1.1-1) ... 844s Selecting previously unselected package r-cran-labeling. 844s Preparing to unpack .../057-r-cran-labeling_0.4.3-1_all.deb ... 844s Unpacking r-cran-labeling (0.4.3-1) ... 844s Selecting previously unselected package r-cran-colorspace. 844s Preparing to unpack .../058-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... 844s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 844s Selecting previously unselected package r-cran-munsell. 844s Preparing to unpack .../059-r-cran-munsell_0.5.0-2build1_all.deb ... 844s Unpacking r-cran-munsell (0.5.0-2build1) ... 844s Selecting previously unselected package r-cran-r6. 844s Preparing to unpack .../060-r-cran-r6_2.5.1-1_all.deb ... 844s Unpacking r-cran-r6 (2.5.1-1) ... 844s Selecting previously unselected package r-cran-rcolorbrewer. 844s Preparing to unpack .../061-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 844s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 844s Selecting previously unselected package r-cran-viridislite. 844s Preparing to unpack .../062-r-cran-viridislite_0.4.2-2_all.deb ... 844s Unpacking r-cran-viridislite (0.4.2-2) ... 844s Selecting previously unselected package r-cran-scales. 844s Preparing to unpack .../063-r-cran-scales_1.3.0-1_all.deb ... 844s Unpacking r-cran-scales (1.3.0-1) ... 844s Selecting previously unselected package r-cran-fansi. 844s Preparing to unpack .../064-r-cran-fansi_1.0.5-1_amd64.deb ... 844s Unpacking r-cran-fansi (1.0.5-1) ... 844s Selecting previously unselected package r-cran-magrittr. 844s Preparing to unpack .../065-r-cran-magrittr_2.0.3-1_amd64.deb ... 844s Unpacking r-cran-magrittr (2.0.3-1) ... 844s Selecting previously unselected package r-cran-utf8. 844s Preparing to unpack .../066-r-cran-utf8_1.2.4-1_amd64.deb ... 844s Unpacking r-cran-utf8 (1.2.4-1) ... 844s Selecting previously unselected package r-cran-vctrs. 844s Preparing to unpack .../067-r-cran-vctrs_0.6.5-1_amd64.deb ... 844s Unpacking r-cran-vctrs (0.6.5-1) ... 844s Selecting previously unselected package r-cran-pillar. 844s Preparing to unpack .../068-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 844s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 844s Selecting previously unselected package r-cran-pkgconfig. 844s Preparing to unpack .../069-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 844s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 845s Selecting previously unselected package r-cran-tibble. 845s Preparing to unpack .../070-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 845s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 845s Selecting previously unselected package r-cran-withr. 845s Preparing to unpack .../071-r-cran-withr_2.5.0-1_all.deb ... 845s Unpacking r-cran-withr (2.5.0-1) ... 845s Selecting previously unselected package r-cran-ggplot2. 845s Preparing to unpack .../072-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 845s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 845s Selecting previously unselected package r-cran-littler. 845s Preparing to unpack .../073-r-cran-littler_0.3.19-1_amd64.deb ... 845s Unpacking r-cran-littler (0.3.19-1) ... 845s Selecting previously unselected package littler. 845s Preparing to unpack .../074-littler_0.3.19-1_all.deb ... 845s Unpacking littler (0.3.19-1) ... 845s Selecting previously unselected package r-cran-pkgkitten. 845s Preparing to unpack .../075-r-cran-pkgkitten_0.2.3-1_all.deb ... 845s Unpacking r-cran-pkgkitten (0.2.3-1) ... 845s Selecting previously unselected package r-cran-rcpp. 845s Preparing to unpack .../076-r-cran-rcpp_1.0.12-1_amd64.deb ... 845s Unpacking r-cran-rcpp (1.0.12-1) ... 845s Selecting previously unselected package r-cran-plyr. 845s Preparing to unpack .../077-r-cran-plyr_1.8.9-1_amd64.deb ... 845s Unpacking r-cran-plyr (1.8.9-1) ... 845s Selecting previously unselected package assemblytics. 845s Preparing to unpack .../078-assemblytics_1.2.1+dfsg-2_all.deb ... 845s Unpacking assemblytics (1.2.1+dfsg-2) ... 845s Selecting previously unselected package libc-dev-bin. 845s Preparing to unpack .../079-libc-dev-bin_2.39-0ubuntu2_amd64.deb ... 845s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 845s Selecting previously unselected package linux-libc-dev:amd64. 845s Preparing to unpack .../080-linux-libc-dev_6.8.0-11.11_amd64.deb ... 845s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 845s Selecting previously unselected package libcrypt-dev:amd64. 845s Preparing to unpack .../081-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 845s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 845s Selecting previously unselected package libtirpc-dev:amd64. 845s Preparing to unpack .../082-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ... 845s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ... 845s Selecting previously unselected package libnsl-dev:amd64. 845s Preparing to unpack .../083-libnsl-dev_1.3.0-3_amd64.deb ... 845s Unpacking libnsl-dev:amd64 (1.3.0-3) ... 845s Selecting previously unselected package rpcsvc-proto. 845s Preparing to unpack .../084-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 845s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 845s Selecting previously unselected package libc6-dev:amd64. 845s Preparing to unpack .../085-libc6-dev_2.39-0ubuntu2_amd64.deb ... 845s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ... 845s Selecting previously unselected package libisl23:amd64. 845s Preparing to unpack .../086-libisl23_0.26-3_amd64.deb ... 845s Unpacking libisl23:amd64 (0.26-3) ... 846s Selecting previously unselected package libmpc3:amd64. 846s Preparing to unpack .../087-libmpc3_1.3.1-1_amd64.deb ... 846s Unpacking libmpc3:amd64 (1.3.1-1) ... 846s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 846s Preparing to unpack .../088-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 846s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 846s Selecting previously unselected package cpp-13. 846s Preparing to unpack .../089-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 846s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 846s Selecting previously unselected package cpp-x86-64-linux-gnu. 846s Preparing to unpack .../090-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 846s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 846s Selecting previously unselected package cpp. 846s Preparing to unpack .../091-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 846s Unpacking cpp (4:13.2.0-7ubuntu1) ... 846s Selecting previously unselected package libcc1-0:amd64. 846s Preparing to unpack .../092-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libitm1:amd64. 846s Preparing to unpack .../093-libitm1_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libatomic1:amd64. 846s Preparing to unpack .../094-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libasan8:amd64. 846s Preparing to unpack .../095-libasan8_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package liblsan0:amd64. 846s Preparing to unpack .../096-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libtsan2:amd64. 846s Preparing to unpack .../097-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libubsan1:amd64. 846s Preparing to unpack .../098-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libhwasan0:amd64. 846s Preparing to unpack .../099-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libquadmath0:amd64. 846s Preparing to unpack .../100-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 846s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 846s Selecting previously unselected package libgcc-13-dev:amd64. 846s Preparing to unpack .../101-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 846s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 846s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 846s Preparing to unpack .../102-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 846s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 847s Selecting previously unselected package gcc-13. 847s Preparing to unpack .../103-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 847s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 847s Selecting previously unselected package gcc-x86-64-linux-gnu. 847s Preparing to unpack .../104-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 847s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 847s Selecting previously unselected package gcc. 847s Preparing to unpack .../105-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 847s Unpacking gcc (4:13.2.0-7ubuntu1) ... 847s Selecting previously unselected package libstdc++-13-dev:amd64. 847s Preparing to unpack .../106-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 847s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 847s Selecting previously unselected package g++-13-x86-64-linux-gnu. 847s Preparing to unpack .../107-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 847s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 847s Selecting previously unselected package g++-13. 847s Preparing to unpack .../108-g++-13_13.2.0-17ubuntu2_amd64.deb ... 847s Unpacking g++-13 (13.2.0-17ubuntu2) ... 847s Selecting previously unselected package g++-x86-64-linux-gnu. 847s Preparing to unpack .../109-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 847s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 847s Selecting previously unselected package g++. 847s Preparing to unpack .../110-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 847s Unpacking g++ (4:13.2.0-7ubuntu1) ... 847s Selecting previously unselected package build-essential. 847s Preparing to unpack .../111-build-essential_12.10ubuntu1_amd64.deb ... 847s Unpacking build-essential (12.10ubuntu1) ... 847s Selecting previously unselected package python-is-python3. 847s Preparing to unpack .../112-python-is-python3_3.11.4-1_all.deb ... 847s Unpacking python-is-python3 (3.11.4-1) ... 847s Selecting previously unselected package python3-all. 847s Preparing to unpack .../113-python3-all_3.12.1-0ubuntu2_amd64.deb ... 847s Unpacking python3-all (3.12.1-0ubuntu2) ... 847s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 847s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 847s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 847s Setting up libpaper1:amd64 (1.1.29) ... 848s 848s Creating config file /etc/papersize with new version 848s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 848s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 848s Setting up libdatrie1:amd64 (0.2.13-3) ... 848s Setting up libxcb-render0:amd64 (1.15-1) ... 848s Setting up unzip 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Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 848s Setting up fonts-dejavu-core (2.37-8) ... 848s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 848s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libwebp7:amd64 (1.3.2-0.4) ... 848s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libnsl-dev:amd64 (1.3.0-3) ... 848s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 848s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 848s Setting up libthai-data (0.1.29-2) ... 848s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 848s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libisl23:amd64 (0.26-3) ... 848s Setting up libc-dev-bin (2.39-0ubuntu2) ... 848s Setting up python-is-python3 (3.11.4-1) ... 848s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 848s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 848s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 848s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 848s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 848s Setting up libice6:amd64 (2:1.0.10-1build2) ... 848s Setting up liblapack3:amd64 (3.12.0-3) ... 848s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 848s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 848s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 848s Setting up libthai0:amd64 (0.1.29-2) ... 848s Setting up python3-numpy (1:1.24.2-2) ... 850s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 850s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 850s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ... 850s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 850s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 850s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 850s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 850s Setting up fontconfig (2.15.0-1ubuntu1) ... 853s Regenerating fonts cache... done. 853s Setting up libxft2:amd64 (2.3.6-1) ... 853s Setting up cpp-13 (13.2.0-17ubuntu2) ... 853s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 853s Setting up libtk8.6:amd64 (8.6.13-2) ... 853s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 853s Setting up libcairo2:amd64 (1.18.0-1) ... 853s Setting up gcc-13 (13.2.0-17ubuntu2) ... 853s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 853s Setting up cpp (4:13.2.0-7ubuntu1) ... 853s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 853s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 853s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 853s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 853s Setting up gcc (4:13.2.0-7ubuntu1) ... 853s Setting up r-base-core (4.3.2-1build1) ... 853s 853s Creating config file /etc/R/Renviron with new version 853s Setting up r-cran-labeling (0.4.3-1) ... 853s Setting up r-cran-lattice (0.22-5-1) ... 853s Setting up r-cran-nlme (3.1.164-1) ... 853s Setting up r-cran-farver (2.1.1-1) ... 853s Setting up r-cran-viridislite (0.4.2-2) ... 853s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 853s Setting up r-cran-r6 (2.5.1-1) ... 853s Setting up r-cran-pkgkitten (0.2.3-1) ... 853s Setting up r-cran-magrittr (2.0.3-1) ... 853s Setting up r-cran-littler (0.3.19-1) ... 853s Setting up r-cran-rcpp (1.0.12-1) ... 853s Setting up g++-13 (13.2.0-17ubuntu2) ... 853s Setting up r-cran-rlang (1.1.3-1) ... 853s Setting up littler (0.3.19-1) ... 853s Setting up r-cran-withr (2.5.0-1) ... 853s Setting up r-cran-fansi (1.0.5-1) ... 853s Setting up r-cran-mass (7.3-60.0.1-1) ... 853s Setting up r-cran-glue (1.7.0-1) ... 853s Setting up r-cran-cli (3.6.2-1) ... 853s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 853s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 853s Setting up r-cran-utf8 (1.2.4-1) ... 853s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 853s Setting up r-cran-plyr (1.8.9-1) ... 853s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 853s Setting up r-cran-isoband (0.2.7-1) ... 853s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 853s Setting up r-cran-matrix (1.6-5-1) ... 853s Setting up r-cran-mgcv (1.9-1-1) ... 853s Setting up g++ (4:13.2.0-7ubuntu1) ... 853s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 853s Setting up build-essential (12.10ubuntu1) ... 853s Setting up r-cran-vctrs (0.6.5-1) ... 853s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 853s Setting up r-cran-munsell (0.5.0-2build1) ... 853s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 853s Setting up r-cran-scales (1.3.0-1) ... 853s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 853s Setting up assemblytics (1.2.1+dfsg-2) ... 853s Processing triggers for man-db (2.12.0-3) ... 854s Processing triggers for install-info (7.1-3) ... 854s Processing triggers for libc-bin (2.39-0ubuntu2) ... 856s Reading package lists... 856s Building dependency tree... 856s Reading state information... 857s Starting pkgProblemResolver with broken count: 0 857s Starting 2 pkgProblemResolver with broken count: 0 857s Done 857s The following NEW packages will be installed: 857s autopkgtest-satdep 857s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 857s Need to get 0 B/704 B of archives. 857s After this operation, 0 B of additional disk space will be used. 857s Get:1 /tmp/autopkgtest.A346B0/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 858s Selecting previously unselected package autopkgtest-satdep. 858s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81397 files and directories currently installed.) 858s Preparing to unpack .../2-autopkgtest-satdep.deb ... 858s Unpacking autopkgtest-satdep (0) ... 858s Setting up autopkgtest-satdep (0) ... 859s (Reading database ... 81397 files and directories currently installed.) 859s Removing autopkgtest-satdep (0) ... 859s autopkgtest [00:47:42]: test run-unit-test: [----------------------- 859s Input delta file: sample.delta 859s Output prefix: myfirstorganism 859s Unique anchor length: 10000 859s Minimum variant size to call: 10000 859s Maximum variant size to call: 50 859s script path: /usr/share/assemblytics/bin 859s Logging progress updates in myfirstorganism/progress.log 859s 1. Filter delta file 860s Keeping fully unique alignments even if they are below the unique anchor length of 10000 bp 860s Use --unique-length X to set the unique anchor length requirement. Default is 10000, such that each alignment must have at least 10000 bp from the query that are not included in any other alignments. 860s Detected uncompressed delta file. Reading... 860s 860s 860s Header (2 lines): 860s /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000005845.2_ASM584v2_genomic.fna /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000801205.1_ASM80120v1_genomic.fna 860s NUCMER 860s 860s 860s First read through the file: 0 seconds for 0 query-reference combinations 860s Filtering alignments of 1 queries 860s Progress: 100% 860s Progress: 100% 860s Deciding which alignments to keep: 0 seconds for 1 queries 860s Detected uncompressed delta file. Reading... 860s Reading file and recording all the entries we decided to keep: 0 seconds for 54 total lines in file 860s 2. Finding variants between alignments 860s Loaded 6 alignments 860s 3. Finding variants within alignments 860s Detected gzipped delta file. Reading... 860s 860s 860s Header (2 lines): 860s /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000005845.2_ASM584v2_genomic.fna /seq/schatz/mnattest/Assemblytics/Ecoli/GCF_000801205.1_ASM80120v1_genomic.fna 860s NUCMER 860s 860s 860s 4. Combine variants between and within alignments 860s Error in revalue(bed$type, c(Repeat_expansion = "Repeat expansion", Repeat_contraction = "Repeat contraction", : 860s x is not a factor or a character vector. 860s Execution halted 862s Warning messages: 862s 1: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. 862s ℹ Please use `linewidth` instead. 862s 2: The `size` argument of `element_line()` is deprecated as of ggplot2 3.4.0. 862s ℹ Please use the `linewidth` argument instead. 862s null device 862s 1 863s Warning message: 863s Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. 863s ℹ Please use `linewidth` instead. 863s adding: myfirstorganism.Assemblytics.Dotplot_filtered.png (deflated 11%) 863s adding: myfirstorganism.Assemblytics.Nchart.pdf (deflated 11%) 863s adding: myfirstorganism.Assemblytics.Nchart.png (deflated 6%) 863s adding: myfirstorganism.Assemblytics.unique_length_filtered_l10000.delta.gz (stored 0%) 863s adding: myfirstorganism.Assemblytics_assembly_stats.txt (deflated 58%) 863s adding: myfirstorganism.Assemblytics_structural_variants.bed (deflated 26%) 863s adding: myfirstorganism.Assemblytics_structural_variants.summary (deflated 49%) 863s adding: myfirstorganism.Assemblytics_structural_variants.summary.csv (deflated 35%) 863s PASS 863s autopkgtest [00:47:46]: test run-unit-test: -----------------------] 864s run-unit-test PASS 864s autopkgtest [00:47:47]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 864s autopkgtest [00:47:47]: @@@@@@@@@@@@@@@@@@@@ summary 864s run-unit-test PASS 874s Creating nova instance adt-noble-i386-assemblytics-20240322-003323-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...