0s autopkgtest [15:32:29]: starting date and time: 2024-03-22 15:32:29+0000 0s autopkgtest [15:32:29]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:32:29]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._6kz72tr/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade tombo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- lxd -r lxd-armhf-10.145.243.213 lxd-armhf-10.145.243.213:autopkgtest/ubuntu/noble/armhf 26s autopkgtest [15:32:55]: testbed dpkg architecture: armhf 27s autopkgtest [15:32:56]: testbed apt version: 2.7.12 27s autopkgtest [15:32:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 35s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 35s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 35s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [54.0 kB] 35s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3807 kB] 35s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 35s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [635 kB] 35s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B] 35s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B] 35s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B] 35s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [3924 kB] 35s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B] 35s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [46.6 kB] 35s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B] 38s Fetched 9098 kB in 2s (5139 kB/s) 38s Reading package lists... 47s tee: /proc/self/fd/2: Permission denied 68s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 68s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 71s The following packages were automatically installed and are no longer required: 71s linux-headers-6.8.0-11 python3-lib2to3 71s Use 'apt autoremove' to remove them. 72s The following packages will be REMOVED: 72s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 72s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 72s libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2 72s libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0 72s libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic python3-distutils 72s The following NEW packages will be installed: 72s libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64 72s libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 72s libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64 72s libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 72s libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64 72s libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20 72s linux-headers-6.8.0-20-generic xdg-user-dirs 72s The following packages have been kept back: 72s multipath-tools 72s The following packages will be upgraded: 72s apparmor apt apt-utils bind9-dnsutils bind9-host bind9-libs binutils 72s binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils bsdutils 72s btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon 72s dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base 72s dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp 72s fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 72s gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 72s groff-base ibverbs-providers inetutils-telnet info initramfs-tools 72s initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd 72s kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils 72s libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 72s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 72s libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libbsd0 libc-bin libc6 72s libcap-ng0 libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3 72s libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7 72s libexpat1 libfdisk1 libfido2-1 libftdi1-2 libfwupd2 libgcc-s1 72s libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0 72s libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0 72s libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 72s libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc 72s libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2 72s libnss-systemd libpam-modules libpam-modules-bin libpam-runtime 72s libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0 72s libpolkit-gobject-1-0 libprotobuf-c1 libpython3-stdlib libpython3.11-minimal 72s libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqmi-glib5 72s libqmi-proxy libqrtr-glib0 librtmp1 libsasl2-2 libsasl2-modules 72s libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2 72s libsframe1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssh-4 libstdc++6 72s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 72s libtirpc-common libudev1 libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 72s libxml2 libxmlb2 libxmuu1 linux-headers-generic locales logsave lshw lsof 72s man-db mount mtr-tiny netplan-generator netplan.io openssh-client 72s openssh-server openssh-sftp-server openssl parted perl perl-base 72s perl-modules-5.38 pinentry-curses plymouth plymouth-theme-ubuntu-text psmisc 72s python-apt-common python3 python3-apt python3-cryptography python3-dbus 72s python3-gdbm python3-gi python3-lib2to3 python3-minimal python3-netplan 72s python3-pkg-resources python3-pyrsistent python3-setuptools 72s python3-typing-extensions python3-yaml python3.11 python3.11-minimal 72s python3.12 python3.12-minimal readline-common rsync shared-mime-info sudo 72s systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd tcpdump 72s telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 usb.ids 72s util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g 72s 234 upgraded, 32 newly installed, 31 to remove and 1 not upgraded. 72s Need to get 106 MB of archives. 72s After this operation, 84.4 MB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB] 72s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB] 72s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB] 72s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB] 72s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.39-0ubuntu6 [2827 kB] 72s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB] 72s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-5.1ubuntu1 [119 kB] 72s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-5.1ubuntu1 [321 kB] 72s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-5.1ubuntu1 [31.4 kB] 72s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-5.1ubuntu1 [78.6 kB] 72s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB] 72s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB] 72s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB] 72s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB] 72s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB] 72s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB] 72s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB] 72s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB] 72s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB] 72s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB] 72s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB] 72s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 72s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B] 72s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB] 73s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB] 73s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB] 73s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB] 73s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu7 [296 kB] 73s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu7 [219 kB] 73s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB] 73s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB] 73s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB] 73s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu1 [137 kB] 73s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB] 73s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB] 73s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB] 73s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB] 73s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB] 73s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB] 73s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB] 73s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB] 73s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB] 73s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB] 73s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 73s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB] 73s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B] 73s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB] 73s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB] 73s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB] 73s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB] 73s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB] 73s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB] 73s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB] 73s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB] 73s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB] 73s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB] 73s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 73s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B] 73s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB] 73s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB] 73s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 73s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB] 73s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB] 73s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB] 73s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB] 73s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB] 73s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB] 73s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB] 73s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB] 74s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB] 74s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB] 74s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB] 74s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB] 74s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB] 74s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB] 74s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB] 74s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB] 74s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB] 74s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB] 74s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB] 74s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB] 74s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB] 74s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB] 74s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB] 74s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB] 74s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB] 74s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB] 74s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB] 74s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B] 74s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 74s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB] 74s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu2 [17.1 kB] 74s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB] 74s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB] 74s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B] 74s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB] 74s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB] 74s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB] 74s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu3 [15.0 kB] 74s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB] 74s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB] 74s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB] 75s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB] 75s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu7 [290 kB] 75s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB] 75s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB] 75s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB] 75s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB] 75s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB] 75s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB] 75s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB] 75s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB] 75s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB] 75s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB] 75s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 75s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B] 75s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB] 75s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB] 75s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB] 75s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB] 75s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B] 75s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB] 75s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB] 75s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB] 75s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-1 [123 kB] 75s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB] 75s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-1 [4349 kB] 75s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.13ubuntu1 [210 kB] 75s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.13ubuntu1 [986 kB] 75s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.13ubuntu1 [1367 kB] 75s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2 [19.4 kB] 75s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2 [216 kB] 75s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB] 75s Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B] 75s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB] 75s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB] 75s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB] 75s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB] 75s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB] 75s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB] 75s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-3.1 [129 kB] 75s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB] 75s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB] 75s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB] 75s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB] 75s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB] 75s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.6build1 [162 kB] 75s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB] 75s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB] 75s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.6build1 [19.8 kB] 75s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 76s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 76s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB] 76s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB] 76s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB] 76s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B] 76s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB] 76s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB] 76s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB] 76s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-3.1 [56.4 kB] 76s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB] 76s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB] 76s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 76s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB] 76s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB] 76s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB] 76s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB] 76s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB] 76s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB] 76s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB] 76s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B] 76s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB] 76s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB] 76s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB] 76s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB] 76s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B] 76s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB] 76s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB] 76s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB] 76s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB] 76s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB] 76s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB] 76s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B] 76s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB] 76s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB] 76s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB] 76s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B] 76s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB] 76s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 76s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB] 76s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB] 76s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB] 76s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB] 76s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB] 76s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB] 76s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB] 76s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB] 76s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB] 76s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB] 76s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB] 76s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB] 76s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.39-0ubuntu6 [530 kB] 76s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB] 76s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB] 77s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB] 77s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB] 77s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB] 77s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB] 77s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB] 77s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB] 77s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB] 77s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB] 77s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB] 77s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB] 77s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB] 77s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB] 77s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-19ubuntu1 [47.7 kB] 77s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB] 77s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB] 77s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB] 77s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-5.1ubuntu1 [13.9 kB] 77s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbsd0 armhf 0.12.1-1 [36.6 kB] 77s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 77s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB] 77s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf locales all 2.39-0ubuntu6 [4232 kB] 77s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu5 [665 kB] 77s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu5 [385 kB] 77s Get:228 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB] 77s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu5 [62.4 kB] 77s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB] 77s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B] 77s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB] 77s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB] 77s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B] 77s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB] 77s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB] 77s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B] 77s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB] 77s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB] 77s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B] 77s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB] 77s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB] 77s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB] 77s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB] 77s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB] 77s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB] 77s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B] 77s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB] 77s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB] 77s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB] 77s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB] 77s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB] 77s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB] 77s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 77s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB] 77s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB] 77s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB] 77s Get:258 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB] 77s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB] 77s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB] 77s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 77s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB] 77s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu2 [79.3 kB] 77s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB] 78s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB] 78s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu5 [31.4 kB] 78s Preconfiguring packages ... 79s Fetched 106 MB in 6s (17.7 MB/s) 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 79s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ... 79s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 79s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 79s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ... 79s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 79s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 79s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ... 79s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 79s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 79s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ... 79s Unpacking libstdc++6:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 79s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 79s Preparing to unpack .../libc6_2.39-0ubuntu6_armhf.deb ... 79s Unpacking libc6:armhf (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 79s Setting up libc6:armhf (2.39-0ubuntu6) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 80s Preparing to unpack .../0-libbrotli1_1.1.0-2build1_armhf.deb ... 80s Unpacking libbrotli1:armhf (1.1.0-2build1) over (1.1.0-2) ... 80s Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-5.1ubuntu1_armhf.deb ... 80s Unpacking libgssapi-krb5-2:armhf (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ... 80s Preparing to unpack .../2-libkrb5-3_1.20.1-5.1ubuntu1_armhf.deb ... 80s Unpacking libkrb5-3:armhf (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ... 80s Preparing to unpack .../3-libkrb5support0_1.20.1-5.1ubuntu1_armhf.deb ... 80s Unpacking libkrb5support0:armhf (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ... 80s Preparing to unpack .../4-libk5crypto3_1.20.1-5.1ubuntu1_armhf.deb ... 80s Unpacking libk5crypto3:armhf (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ... 80s Preparing to unpack .../5-libcom-err2_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 80s Unpacking libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 80s Preparing to unpack .../6-zlib1g_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ... 80s Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 80s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 80s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ... 80s Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ... 80s Preparing to unpack .../udisks2_2.10.1-6_armhf.deb ... 80s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ... 80s Preparing to unpack .../libudisks2-0_2.10.1-6_armhf.deb ... 80s Unpacking libudisks2-0:armhf (2.10.1-6) over (2.10.1-1ubuntu2) ... 80s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_armhf.deb ... 80s Unpacking libblkid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 80s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 80s Preparing to unpack .../liblzma5_5.6.0-0.2_armhf.deb ... 80s Unpacking liblzma5:armhf (5.6.0-0.2) over (5.4.5-0.3) ... 80s Setting up liblzma5:armhf (5.6.0-0.2) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 80s Preparing to unpack .../0-kmod_31+20240202-2ubuntu4_armhf.deb ... 80s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 80s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty 80s Preparing to unpack .../1-libkmod2_31+20240202-2ubuntu4_armhf.deb ... 80s Unpacking libkmod2:armhf (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 80s Preparing to unpack .../2-systemd-dev_255.4-1ubuntu5_all.deb ... 80s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 80s Preparing to unpack .../3-systemd-timesyncd_255.4-1ubuntu5_armhf.deb ... 80s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 80s Preparing to unpack .../4-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ... 80s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 80s Preparing to unpack .../5-libaudit-common_1%3a3.1.2-2.1_all.deb ... 80s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ... 81s Setting up libaudit-common (1:3.1.2-2.1) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 81s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ... 81s Unpacking libcap-ng0:armhf (0.8.4-2build1) over (0.8.4-2) ... 81s Setting up libcap-ng0:armhf (0.8.4-2build1) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 81s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_armhf.deb ... 81s Unpacking libaudit1:armhf (1:3.1.2-2.1) over (1:3.1.2-2) ... 81s Setting up libaudit1:armhf (1:3.1.2-2.1) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 81s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ... 81s Unpacking libpam0g:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 81s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ... 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 81s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ... 81s Unpacking libselinux1:armhf (3.5-2ubuntu1) over (3.5-2build1) ... 81s Setting up libselinux1:armhf (3.5-2ubuntu1) ... 81s dpkg: libcurl4:armhf: dependency problems, but removing anyway as you requested: 81s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 81s 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 81s Removing libcurl4:armhf (8.5.0-2ubuntu2) ... 81s Selecting previously unselected package libcurl4t64:armhf. 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58613 files and directories currently installed.) 81s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_armhf.deb ... 81s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu7) ... 81s Preparing to unpack .../curl_8.5.0-2ubuntu7_armhf.deb ... 81s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 81s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested: 81s wget depends on libpsl5 (>= 0.16.0). 81s libcurl3-gnutls:armhf depends on libpsl5 (>= 0.16.0). 81s 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 81s Removing libpsl5:armhf (0.21.2-1build1) ... 81s Selecting previously unselected package libpsl5t64:armhf. 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58614 files and directories currently installed.) 81s Preparing to unpack .../libpsl5t64_0.21.2-1.1_armhf.deb ... 81s Unpacking libpsl5t64:armhf (0.21.2-1.1) ... 81s Preparing to unpack .../wget_1.21.4-1ubuntu2_armhf.deb ... 81s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ... 81s Preparing to unpack .../tnftp_20230507-2build1_armhf.deb ... 81s Unpacking tnftp (20230507-2build1) over (20230507-2) ... 81s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested: 81s tcpdump depends on libpcap0.8 (>= 1.9.1). 81s 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58620 files and directories currently installed.) 81s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ... 81s Selecting previously unselected package libpcap0.8t64:armhf. 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58609 files and directories currently installed.) 81s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu1_armhf.deb ... 81s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ... 81s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ... 81s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 81s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ... 81s Unpacking libsystemd-shared:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 82s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ... 82s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 82s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ... 82s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 82s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ... 82s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 82s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ... 82s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 82s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_armhf.deb ... 82s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 82s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ... 82s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 82s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ... 82s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 82s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ... 82s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 82s Selecting previously unselected package linux-headers-6.8.0-20. 82s Preparing to unpack .../11-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 82s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 85s Selecting previously unselected package linux-headers-6.8.0-20-generic. 85s Preparing to unpack .../12-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ... 85s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 86s Preparing to unpack .../13-linux-headers-generic_6.8.0-20.20+1_armhf.deb ... 86s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89772 files and directories currently installed.) 86s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ... 86s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested: 86s systemd depends on libssl3 (>= 3.0.0). 86s libssh-4:armhf depends on libssl3 (>= 3.0.0). 86s libsasl2-modules:armhf depends on libssl3 (>= 3.0.0). 86s libsasl2-2:armhf depends on libssl3 (>= 3.0.0). 86s libpython3.12-minimal:armhf depends on libssl3 (>= 3.0.0). 86s libpython3.11-minimal:armhf depends on libssl3 (>= 3.0.0). 86s libnvme1 depends on libssl3 (>= 3.0.0). 86s libfido2-1:armhf depends on libssl3 (>= 3.0.0). 86s libcryptsetup12:armhf depends on libssl3 (>= 3.0.0). 86s dhcpcd-base depends on libssl3 (>= 3.0.0). 86s bind9-libs:armhf depends on libssl3 (>= 3.0.0). 86s 86s Removing libssl3:armhf (3.0.10-1ubuntu4) ... 86s Selecting previously unselected package libssl3t64:armhf. 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 86s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ... 86s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ... 86s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 86s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ... 86s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 86s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ... 86s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 86s Setting up libudev1:armhf (255.4-1ubuntu5) ... 86s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 86s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ... 86s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 87s Preparing to unpack .../udev_255.4-1ubuntu5_armhf.deb ... 87s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 87s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ... 87s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 87s Setting up libsystemd0:armhf (255.4-1ubuntu5) ... 87s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ... 87s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ... 87s Setting up systemd-dev (255.4-1ubuntu5) ... 87s Setting up systemd (255.4-1ubuntu5) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 88s Preparing to unpack .../systemd-sysv_255.4-1ubuntu5_armhf.deb ... 88s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 88s Preparing to unpack .../libpam-systemd_255.4-1ubuntu5_armhf.deb ... 88s Unpacking libpam-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 88s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_armhf.deb ... 88s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 88s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ... 88s pam_namespace.service is a disabled or a static unit not running, not starting it. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 88s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_armhf.deb ... 88s Unpacking libpam-modules:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 88s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ... 88s Installing new version of config file /etc/security/namespace.init ... 88s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 89s Preparing to unpack .../0-dbus-user-session_1.14.10-4ubuntu2_armhf.deb ... 89s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 89s Preparing to unpack .../1-libapparmor1_4.0.0-beta3-0ubuntu2_armhf.deb ... 89s Unpacking libapparmor1:armhf (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 89s Preparing to unpack .../2-libexpat1_2.6.1-2_armhf.deb ... 89s Unpacking libexpat1:armhf (2.6.1-2) over (2.6.0-1) ... 89s Preparing to unpack .../3-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 89s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 89s Preparing to unpack .../4-dbus-bin_1.14.10-4ubuntu2_armhf.deb ... 89s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 89s Preparing to unpack .../5-dbus_1.14.10-4ubuntu2_armhf.deb ... 89s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 89s Preparing to unpack .../6-dbus-daemon_1.14.10-4ubuntu2_armhf.deb ... 89s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 89s Preparing to unpack .../7-libdbus-1-3_1.14.10-4ubuntu2_armhf.deb ... 89s Unpacking libdbus-1-3:armhf (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 89s Preparing to unpack .../8-libmount1_2.39.3-9ubuntu2_armhf.deb ... 89s Unpacking libmount1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 89s Setting up libmount1:armhf (2.39.3-9ubuntu2) ... 89s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 89s Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_armhf.deb ... 89s Unpacking libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 89s Preparing to unpack .../libuuid1_2.39.3-9ubuntu2_armhf.deb ... 89s Unpacking libuuid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 89s Setting up libuuid1:armhf (2.39.3-9ubuntu2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 89s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ... 89s Unpacking libcryptsetup12:armhf (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 89s Preparing to unpack .../1-libfdisk1_2.39.3-9ubuntu2_armhf.deb ... 89s Unpacking libfdisk1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 89s Preparing to unpack .../2-mount_2.39.3-9ubuntu2_armhf.deb ... 89s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 89s Preparing to unpack .../3-libblockdev-utils3_3.1.0-1build1_armhf.deb ... 89s Unpacking libblockdev-utils3:armhf (3.1.0-1build1) over (3.1.0-1) ... 89s Preparing to unpack .../4-libvolume-key1_0.3.12-7build1_armhf.deb ... 89s Unpacking libvolume-key1:armhf (0.3.12-7build1) over (0.3.12-5build2) ... 90s Preparing to unpack .../5-libjcat1_0.2.0-2build2_armhf.deb ... 90s Unpacking libjcat1:armhf (0.2.0-2build2) over (0.2.0-2) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 90s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 90s Preparing to unpack .../parted_3.6-3.1build2_armhf.deb ... 90s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 90s Removing libparted2:armhf (3.6-3) ... 90s Selecting previously unselected package libparted2t64:armhf. 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 90s Preparing to unpack .../00-libparted2t64_3.6-3.1build2_armhf.deb ... 90s Unpacking libparted2t64:armhf (3.6-3.1build2) ... 90s Preparing to unpack .../01-python3.12_3.12.2-4build3_armhf.deb ... 90s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 90s Preparing to unpack .../02-python3.12-minimal_3.12.2-4build3_armhf.deb ... 90s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 90s Preparing to unpack .../03-libpython3.12-stdlib_3.12.2-4build3_armhf.deb ... 90s Unpacking libpython3.12-stdlib:armhf (3.12.2-4build3) over (3.12.2-1) ... 90s Preparing to unpack .../04-libpython3.12-minimal_3.12.2-4build3_armhf.deb ... 90s Unpacking libpython3.12-minimal:armhf (3.12.2-4build3) over (3.12.2-1) ... 90s Preparing to unpack .../05-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 90s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 90s Preparing to unpack .../06-python3.11_3.11.8-1build4_armhf.deb ... 91s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 91s Preparing to unpack .../07-python3.11-minimal_3.11.8-1build4_armhf.deb ... 91s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 91s Preparing to unpack .../08-libpython3.11-stdlib_3.11.8-1build4_armhf.deb ... 91s Unpacking libpython3.11-stdlib:armhf (3.11.8-1build4) over (3.11.8-1) ... 91s Preparing to unpack .../09-libpython3.11-minimal_3.11.8-1build4_armhf.deb ... 91s Unpacking libpython3.11-minimal:armhf (3.11.8-1build4) over (3.11.8-1) ... 91s Preparing to unpack .../10-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ... 91s Unpacking libsqlite3-0:armhf (3.45.1-1ubuntu1) over (3.45.1-1) ... 91s Preparing to unpack .../11-libtext-iconv-perl_1.7-8build2_armhf.deb ... 91s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ... 91s Preparing to unpack .../12-libtext-charwidth-perl_0.04-11build2_armhf.deb ... 91s Unpacking libtext-charwidth-perl:armhf (0.04-11build2) over (0.04-11build1) ... 91s Preparing to unpack .../13-perl-modules-5.38_5.38.2-3.2_all.deb ... 91s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 92s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested: 92s perl depends on libperl5.38 (= 5.38.2-3). 92s 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78624 files and directories currently installed.) 92s Removing libperl5.38:armhf (5.38.2-3) ... 92s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested: 92s iproute2 depends on libdb5.3. 92s apt-utils depends on libdb5.3. 92s 92s Removing libdb5.3:armhf (5.3.28+dfsg2-4) ... 92s Selecting previously unselected package libdb5.3t64:armhf. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78099 files and directories currently installed.) 92s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ... 92s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-6) ... 92s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu2_armhf.deb ... 92s Unpacking python3-gdbm:armhf (3.12.2-3ubuntu2) over (3.11.5-1) ... 92s Preparing to unpack .../man-db_2.12.0-3build4_armhf.deb ... 92s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78105 files and directories currently installed.) 92s Removing libgdbm-compat4:armhf (1.23-5) ... 92s Removing libgdbm6:armhf (1.23-5) ... 92s Selecting previously unselected package libgdbm6t64:armhf. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78095 files and directories currently installed.) 92s Preparing to unpack .../libgdbm6t64_1.23-5.1_armhf.deb ... 92s Unpacking libgdbm6t64:armhf (1.23-5.1) ... 92s Selecting previously unselected package libgdbm-compat4t64:armhf. 92s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ... 92s Unpacking libgdbm-compat4t64:armhf (1.23-5.1) ... 92s Selecting previously unselected package libperl5.38t64:armhf. 92s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ... 92s Unpacking libperl5.38t64:armhf (5.38.2-3.2) ... 92s Preparing to unpack .../perl_5.38.2-3.2_armhf.deb ... 92s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 92s Preparing to unpack .../perl-base_5.38.2-3.2_armhf.deb ... 92s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 92s Setting up perl-base (5.38.2-3.2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78626 files and directories currently installed.) 93s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu3_armhf.deb ... 93s Unpacking liblocale-gettext-perl (1.07-6ubuntu3) over (1.07-6build1) ... 93s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested: 93s libhogweed6:armhf depends on libnettle8. 93s libgnutls30:armhf depends on libnettle8 (>= 3.9~). 93s libcurl3-gnutls:armhf depends on libnettle8. 93s libarchive13:armhf depends on libnettle8. 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78626 files and directories currently installed.) 93s Removing libnettle8:armhf (3.9.1-2) ... 93s Selecting previously unselected package libnettle8t64:armhf. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78619 files and directories currently installed.) 93s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ... 93s Unpacking libnettle8t64:armhf (3.9.1-2.2) ... 93s Setting up libnettle8t64:armhf (3.9.1-2.2) ... 93s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested: 93s libgnutls30:armhf depends on libhogweed6 (>= 3.6). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 93s Removing libhogweed6:armhf (3.9.1-2) ... 93s Selecting previously unselected package libhogweed6t64:armhf. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 93s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ... 93s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ... 93s Setting up libhogweed6t64:armhf (3.9.1-2.2) ... 93s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested: 93s libldap2:armhf depends on libgnutls30 (>= 3.8.2). 93s libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2). 93s fwupd depends on libgnutls30 (>= 3.7.3). 93s dirmngr depends on libgnutls30 (>= 3.8.1). 93s apt depends on libgnutls30 (>= 3.8.1). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78628 files and directories currently installed.) 93s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ... 93s Selecting previously unselected package libgnutls30t64:armhf. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78619 files and directories currently installed.) 93s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ... 93s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ... 93s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 93s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ... 93s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 93s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested: 93s libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0). 93s fwupd depends on libcurl3-gnutls (>= 7.63.0). 93s 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 93s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ... 93s Selecting previously unselected package libcurl3t64-gnutls:armhf. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78640 files and directories currently installed.) 93s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu7_armhf.deb ... 93s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ... 93s Preparing to unpack .../01-shared-mime-info_2.4-1build1_armhf.deb ... 93s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 93s Preparing to unpack .../02-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ... 93s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ... 93s Preparing to unpack .../03-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ... 93s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 93s Preparing to unpack .../04-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ... 93s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ... 93s Preparing to unpack .../05-python3-gi_3.47.0-3build1_armhf.deb ... 94s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 94s Preparing to unpack .../06-python3-dbus_1.3.2-5build2_armhf.deb ... 94s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 94s Selecting previously unselected package libnetplan1:armhf. 94s Preparing to unpack .../07-libnetplan1_1.0-1_armhf.deb ... 94s Unpacking libnetplan1:armhf (1.0-1) ... 94s Preparing to unpack .../08-python3-netplan_1.0-1_armhf.deb ... 94s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 94s Preparing to unpack .../09-netplan-generator_1.0-1_armhf.deb ... 94s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 94s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 94s Preparing to unpack .../10-initramfs-tools-bin_0.142ubuntu23_armhf.deb ... 94s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 94s Preparing to unpack .../11-initramfs-tools-core_0.142ubuntu23_all.deb ... 94s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 94s Preparing to unpack .../12-initramfs-tools_0.142ubuntu23_all.deb ... 94s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 94s Preparing to unpack .../13-netplan.io_1.0-1_armhf.deb ... 94s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 94s Preparing to unpack .../14-libxmlb2_0.3.15-1build1_armhf.deb ... 94s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ... 94s Preparing to unpack .../15-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ... 94s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 94s Preparing to unpack .../16-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ... 94s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ... 94s Preparing to unpack .../17-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ... 94s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 94s Preparing to unpack .../18-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ... 94s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ... 94s Preparing to unpack .../19-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ... 94s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78651 files and directories currently installed.) 95s Removing libnetplan0:armhf (0.107.1-3) ... 95s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested: 95s libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0). 95s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 95s libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56). 95s libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3). 95s libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3). 95s libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0). 95s libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0). 95s libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2). 95s fwupd depends on libglib2.0-0 (>= 2.79.0). 95s bolt depends on libglib2.0-0 (>= 2.56.0). 95s 95s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ... 95s Selecting previously unselected package libglib2.0-0t64:armhf. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 95s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ... 95s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 95s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm' 95s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ... 95s Preparing to unpack .../libfwupd2_1.9.15-1_armhf.deb ... 95s Unpacking libfwupd2:armhf (1.9.15-1) over (1.9.14-1) ... 95s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested: 95s fwupd depends on libarchive13 (>= 3.2.1). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 95s Removing libarchive13:armhf (3.7.2-1ubuntu2) ... 95s Selecting previously unselected package libarchive13t64:armhf. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78641 files and directories currently installed.) 95s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ... 95s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ... 95s Preparing to unpack .../fwupd_1.9.15-1_armhf.deb ... 95s Unpacking fwupd (1.9.15-1) over (1.9.14-1) ... 95s Preparing to unpack .../apt-utils_2.7.13ubuntu1_armhf.deb ... 95s Unpacking apt-utils (2.7.13ubuntu1) over (2.7.12) ... 95s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested: 95s ubuntu-pro-client depends on libapt-pkg6.0 (>= 1.9~). 95s python3-apt depends on libapt-pkg6.0 (>= 2.7.11). 95s apt depends on libapt-pkg6.0 (>= 2.7.12). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78648 files and directories currently installed.) 95s Removing libapt-pkg6.0:armhf (2.7.12) ... 95s Selecting previously unselected package libapt-pkg6.0t64:armhf. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78599 files and directories currently installed.) 95s Preparing to unpack .../libapt-pkg6.0t64_2.7.13ubuntu1_armhf.deb ... 95s Unpacking libapt-pkg6.0t64:armhf (2.7.13ubuntu1) ... 95s Setting up libapt-pkg6.0t64:armhf (2.7.13ubuntu1) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 95s Preparing to unpack .../apt_2.7.13ubuntu1_armhf.deb ... 95s Unpacking apt (2.7.13ubuntu1) over (2.7.12) ... 96s Setting up apt (2.7.13ubuntu1) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 96s Preparing to unpack .../ubuntu-pro-client-l10n_31.2_armhf.deb ... 96s Unpacking ubuntu-pro-client-l10n (31.2) over (31.1) ... 96s Preparing to unpack .../ubuntu-pro-client_31.2_armhf.deb ... 96s Unpacking ubuntu-pro-client (31.2) over (31.1) ... 97s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested: 97s gpgv depends on libnpth0 (>= 0.90). 97s gpgsm depends on libnpth0 (>= 0.90). 97s gpg-agent depends on libnpth0 (>= 0.90). 97s gpg depends on libnpth0 (>= 0.90). 97s dirmngr depends on libnpth0 (>= 0.90). 97s 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 97s Removing libnpth0:armhf (1.6-3build2) ... 97s Selecting previously unselected package libnpth0t64:armhf. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78644 files and directories currently installed.) 97s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ... 97s Unpacking libnpth0t64:armhf (1.6-3.1) ... 97s Setting up libnpth0t64:armhf (1.6-3.1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 97s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s Setting up gpgv (2.4.4-2ubuntu15) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 97s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ... 97s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 97s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested: 97s gpgconf depends on libreadline8 (>= 6.0). 97s gawk depends on libreadline8 (>= 6.0). 97s fdisk depends on libreadline8 (>= 6.0). 97s 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 97s Removing libreadline8:armhf (8.2-3) ... 97s Selecting previously unselected package libreadline8t64:armhf. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78638 files and directories currently installed.) 97s Preparing to unpack .../libreadline8t64_8.2-3.1_armhf.deb ... 97s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' 97s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' 97s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' 97s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' 97s Unpacking libreadline8t64:armhf (8.2-3.1) ... 98s Setting up libreadline8t64:armhf (8.2-3.1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78658 files and directories currently installed.) 98s Preparing to unpack .../00-gawk_1%3a5.2.1-2build2_armhf.deb ... 98s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 98s Preparing to unpack .../01-fdisk_2.39.3-9ubuntu2_armhf.deb ... 98s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 98s Preparing to unpack .../02-gpgconf_2.4.4-2ubuntu15_armhf.deb ... 98s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 98s Preparing to unpack .../03-dirmngr_2.4.4-2ubuntu15_armhf.deb ... 98s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 98s Preparing to unpack .../04-gnupg_2.4.4-2ubuntu15_all.deb ... 98s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 98s Preparing to unpack .../05-python3-apt_2.7.6build1_armhf.deb ... 98s Unpacking python3-apt (2.7.6build1) over (2.7.6) ... 98s Preparing to unpack .../06-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ... 98s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 98s Preparing to unpack .../07-python3-yaml_6.0.1-2build1_armhf.deb ... 98s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 98s Preparing to unpack .../08-python-apt-common_2.7.6build1_all.deb ... 98s Unpacking python-apt-common (2.7.6build1) over (2.7.6) ... 99s Preparing to unpack .../09-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 99s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 99s Preparing to unpack .../10-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 99s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 99s Preparing to unpack .../11-dpkg_1.22.6ubuntu4_armhf.deb ... 99s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 99s Setting up dpkg (1.22.6ubuntu4) ... 99s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ... 99s Setting up libexpat1:armhf (2.6.1-2) ... 99s Setting up python3.12-minimal (3.12.2-4build3) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 101s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ... 101s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 101s Setting up python3-minimal (3.12.2-0ubuntu1) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 101s Preparing to unpack .../python3_3.12.2-0ubuntu1_armhf.deb ... 101s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 101s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ... 101s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 101s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_armhf.deb ... 101s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 101s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 101s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ... 101s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 101s Preparing to unpack .../1-groff-base_1.23.0-3build1_armhf.deb ... 101s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 101s Preparing to unpack .../2-readline-common_8.2-3.1_all.deb ... 101s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 101s Selecting previously unselected package libgpgme11t64:armhf. 101s Preparing to unpack .../3-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ... 101s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ... 101s Preparing to unpack .../4-libblockdev-crypto3_3.1.0-1build1_armhf.deb ... 101s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ... 101s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 101s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 102s Preparing to unpack .../6-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 102s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 102s Preparing to unpack .../7-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ... 102s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 102s Preparing to unpack .../8-libblockdev-fs3_3.1.0-1build1_armhf.deb ... 102s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ... 102s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 102s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 102s 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78662 files and directories currently installed.) 102s Removing libreiserfscore0 (1:3.6.27-7) ... 102s Selecting previously unselected package libreiserfscore0t64. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78657 files and directories currently installed.) 102s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ... 102s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 102s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ... 102s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 102s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested: 102s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 102s 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78663 files and directories currently installed.) 102s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ... 102s Selecting previously unselected package libext2fs2t64:armhf. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78656 files and directories currently installed.) 102s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 102s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' 102s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 102s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' 102s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 102s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ... 102s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ... 102s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78672 files and directories currently installed.) 102s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 102s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 102s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ... 102s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ... 102s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ... 102s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ... 102s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ... 102s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78672 files and directories currently installed.) 102s Removing libnvme1 (1.8-2) ... 102s Selecting previously unselected package libnvme1t64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78665 files and directories currently installed.) 103s Preparing to unpack .../0-libnvme1t64_1.8-3_armhf.deb ... 103s Unpacking libnvme1t64 (1.8-3) ... 103s Preparing to unpack .../1-libblockdev-part3_3.1.0-1build1_armhf.deb ... 103s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ... 103s Preparing to unpack .../2-libblockdev-swap3_3.1.0-1build1_armhf.deb ... 103s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ... 103s Preparing to unpack .../3-libblockdev3_3.1.0-1build1_armhf.deb ... 103s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ... 103s Preparing to unpack .../4-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ... 103s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ... 103s Preparing to unpack .../5-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ... 103s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 103s Preparing to unpack .../6-libbpf1_1%3a1.3.0-2build1_armhf.deb ... 103s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ... 103s Preparing to unpack .../7-iproute2_6.1.0-1ubuntu5_armhf.deb ... 103s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 103s Removing libelf1:armhf (0.190-1) ... 103s Selecting previously unselected package libelf1t64:armhf. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78668 files and directories currently installed.) 103s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ... 103s Unpacking libelf1t64:armhf (0.190-1.1build2) ... 103s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 103s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 103s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ... 103s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 103s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ... 103s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 103s Removing libtirpc3:armhf (1.3.4+ds-1build1) ... 103s Selecting previously unselected package libtirpc3t64:armhf. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78667 files and directories currently installed.) 103s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ... 103s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' 103s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 103s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ... 103s Preparing to unpack .../01-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ... 103s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 103s Preparing to unpack .../02-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ... 103s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ... 103s Preparing to unpack .../03-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 103s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 103s Preparing to unpack .../04-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ... 103s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ... 103s Preparing to unpack .../05-libnghttp2-14_1.59.0-1build1_armhf.deb ... 103s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ... 103s Preparing to unpack .../06-libssh-4_0.10.6-2build1_armhf.deb ... 103s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ... 103s Preparing to unpack .../07-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ... 103s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ... 103s Preparing to unpack .../08-libgusb2_0.4.8-1build1_armhf.deb ... 103s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ... 103s Preparing to unpack .../09-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ... 103s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ... 103s Preparing to unpack .../10-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ... 103s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 103s Preparing to unpack .../11-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 103s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 104s Preparing to unpack .../12-libibverbs1_50.0-2build1_armhf.deb ... 104s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ... 104s Preparing to unpack .../13-libfido2-1_1.14.0-1build1_armhf.deb ... 104s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ... 104s Preparing to unpack .../14-coreutils_9.4-3ubuntu3_armhf.deb ... 104s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 104s Setting up coreutils (9.4-3ubuntu3) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78678 files and directories currently installed.) 104s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ... 104s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 104s Setting up util-linux (2.39.3-9ubuntu2) ... 105s fstrim.service is a disabled or a static unit not running, not starting it. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78678 files and directories currently installed.) 105s Preparing to unpack .../libc-bin_2.39-0ubuntu6_armhf.deb ... 105s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 105s Setting up libc-bin (2.39-0ubuntu6) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78678 files and directories currently installed.) 105s Removing libatm1:armhf (1:2.5.1-5) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 105s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ... 105s Unpacking file (1:5.45-3) over (1:5.45-2) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 105s Removing libmagic1:armhf (1:5.45-2) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78663 files and directories currently installed.) 105s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ... 105s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 105s Selecting previously unselected package libmagic1t64:armhf. 105s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ... 105s Unpacking libmagic1t64:armhf (1:5.45-3) ... 105s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ... 105s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78674 files and directories currently installed.) 105s Removing libpng16-16:armhf (1.6.43-1) ... 105s Selecting previously unselected package libpng16-16t64:armhf. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78664 files and directories currently installed.) 105s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ... 105s Unpacking libpng16-16t64:armhf (1.6.43-3) ... 105s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ... 105s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 106s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ... 106s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 106s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ... 106s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78675 files and directories currently installed.) 106s Removing libuv1:armhf (1.48.0-1) ... 106s Selecting previously unselected package libuv1t64:armhf. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78670 files and directories currently installed.) 106s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ... 106s Unpacking libuv1t64:armhf (1.48.0-1.1) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78676 files and directories currently installed.) 106s Removing python3-distutils (3.11.5-1) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 106s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ... 106s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 106s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ... 106s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ... 106s Setting up libdebconfclient0:armhf (0.271ubuntu2) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 106s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 106s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 106s Setting up libsemanage-common (3.5-1build4) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 106s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ... 106s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ... 106s Setting up libsemanage2:armhf (3.5-1build4) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 106s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ... 106s Unpacking install-info (7.1-3build1) over (7.1-3) ... 106s Setting up install-info (7.1-3build1) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 106s Preparing to unpack .../00-gcc-13-base_13.2.0-19ubuntu1_armhf.deb ... 106s Unpacking gcc-13-base:armhf (13.2.0-19ubuntu1) over (13.2.0-17ubuntu2) ... 106s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 106s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 106s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ... 106s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 106s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_armhf.deb ... 106s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 107s Preparing to unpack .../04-krb5-locales_1.20.1-5.1ubuntu1_all.deb ... 107s Unpacking krb5-locales (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ... 107s Preparing to unpack .../05-libbsd0_0.12.1-1_armhf.deb ... 107s Unpacking libbsd0:armhf (0.12.1-1) over (0.11.8-1) ... 107s Preparing to unpack .../06-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 107s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 107s Preparing to unpack .../07-libslang2_2.3.3-3build1_armhf.deb ... 107s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ... 107s Preparing to unpack .../08-locales_2.39-0ubuntu6_all.deb ... 107s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 107s Preparing to unpack .../09-vim-tiny_2%3a9.1.0016-1ubuntu5_armhf.deb ... 107s Unpacking vim-tiny (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ... 107s Preparing to unpack .../10-vim-common_2%3a9.1.0016-1ubuntu5_all.deb ... 107s Unpacking vim-common (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ... 107s Selecting previously unselected package xdg-user-dirs. 107s Preparing to unpack .../11-xdg-user-dirs_0.18-1_armhf.deb ... 107s Unpacking xdg-user-dirs (0.18-1) ... 107s Preparing to unpack .../12-xxd_2%3a9.1.0016-1ubuntu5_armhf.deb ... 107s Unpacking xxd (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ... 107s Preparing to unpack .../13-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ... 108s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 108s Preparing to unpack .../14-ftp_20230507-2build1_all.deb ... 108s Unpacking ftp (20230507-2build1) over (20230507-2) ... 108s Preparing to unpack .../15-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ... 108s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 108s Preparing to unpack .../16-info_7.1-3build1_armhf.deb ... 108s Unpacking info (7.1-3build1) over (7.1-3) ... 108s Preparing to unpack .../17-libxmuu1_2%3a1.1.3-3build1_armhf.deb ... 108s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ... 108s Preparing to unpack .../18-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ... 108s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 108s Preparing to unpack .../19-mtr-tiny_0.95-1.1build1_armhf.deb ... 108s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 108s Preparing to unpack .../20-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ... 108s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 108s Preparing to unpack .../21-plymouth_24.004.60-1ubuntu6_armhf.deb ... 108s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 108s Preparing to unpack .../22-psmisc_23.7-1_armhf.deb ... 108s Unpacking psmisc (23.7-1) over (23.6-2) ... 108s Preparing to unpack .../23-telnet_0.17+2.5-3ubuntu3_all.deb ... 108s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 109s Preparing to unpack .../24-usb.ids_2024.03.18-1_all.deb ... 109s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 109s Preparing to unpack .../25-xz-utils_5.6.0-0.2_armhf.deb ... 109s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 109s Preparing to unpack .../26-libctf0_2.42-4ubuntu1_armhf.deb ... 109s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../27-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ... 109s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../28-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ... 109s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../29-libbinutils_2.42-4ubuntu1_armhf.deb ... 109s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../30-binutils_2.42-4ubuntu1_armhf.deb ... 109s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../31-binutils-common_2.42-4ubuntu1_armhf.deb ... 109s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../32-libsframe1_2.42-4ubuntu1_armhf.deb ... 109s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 109s Preparing to unpack .../33-bolt_0.9.6-2build1_armhf.deb ... 109s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 109s Preparing to unpack .../34-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ... 109s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 109s Preparing to unpack .../35-dpkg-dev_1.22.6ubuntu4_all.deb ... 109s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 109s Preparing to unpack .../36-libdpkg-perl_1.22.6ubuntu4_all.deb ... 109s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 109s Preparing to unpack .../37-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 109s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 109s Preparing to unpack .../38-ibverbs-providers_50.0-2build1_armhf.deb ... 109s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ... 109s Preparing to unpack .../39-jq_1.7.1-3_armhf.deb ... 109s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 110s Preparing to unpack .../40-libjq1_1.7.1-3_armhf.deb ... 110s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ... 110s Selecting previously unselected package libatm1t64:armhf. 110s Preparing to unpack .../41-libatm1t64_1%3a2.5.1-5.1_armhf.deb ... 110s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ... 110s Preparing to unpack .../42-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ... 110s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 110s Preparing to unpack .../43-libftdi1-2_1.5-6build4_armhf.deb ... 110s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ... 110s Preparing to unpack .../44-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 110s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 110s Preparing to unpack .../45-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 110s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 110s Preparing to unpack .../46-python3-lib2to3_3.12.2-3ubuntu2_all.deb ... 110s Unpacking python3-lib2to3 (3.12.2-3ubuntu2) over (3.11.5-1) ... 110s Preparing to unpack .../47-python3-pyrsistent_0.20.0-1build1_armhf.deb ... 110s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ... 110s Preparing to unpack .../48-python3-typing-extensions_4.10.0-1_all.deb ... 110s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 110s Preparing to unpack .../49-kpartx_0.9.4-5ubuntu5_armhf.deb ... 110s Unpacking kpartx (0.9.4-5ubuntu5) over (0.9.4-5ubuntu3) ... 110s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 110s Setting up libtext-iconv-perl:armhf (1.7-8build2) ... 110s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ... 110s Setting up libibverbs1:armhf (50.0-2build1) ... 110s Setting up systemd-sysv (255.4-1ubuntu5) ... 110s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ... 110s Setting up libatm1t64:armhf (1:2.5.1-5.1) ... 110s Setting up libgdbm6t64:armhf (1.23-5.1) ... 110s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 110s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ... 110s Setting up xdg-user-dirs (0.18-1) ... 110s Setting up ibverbs-providers:armhf (50.0-2build1) ... 110s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 110s Setting up libmagic-mgc (1:5.45-3) ... 110s Setting up gawk (1:5.2.1-2build2) ... 110s Setting up psmisc (23.7-1) ... 110s Setting up libjq1:armhf (1.7.1-3) ... 110s Setting up libtirpc-common (1.3.4+ds-1.1) ... 110s Setting up libbrotli1:armhf (1.1.0-2build1) ... 110s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ... 110s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ... 110s Setting up libuv1t64:armhf (1.48.0-1.1) ... 110s Setting up libmagic1t64:armhf (1:5.45-3) ... 110s Setting up binutils-common:armhf (2.42-4ubuntu1) ... 110s Setting up libpsl5t64:armhf (0.21.2-1.1) ... 110s Setting up libnghttp2-14:armhf (1.59.0-1build1) ... 110s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 110s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ... 110s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ... 110s Setting up krb5-locales (1.20.1-5.1ubuntu1) ... 110s Setting up file (1:5.45-3) ... 110s Setting up kmod (31+20240202-2ubuntu4) ... 111s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 111s Setting up locales (2.39-0ubuntu6) ... 111s Generating locales (this might take a while)... 113s en_US.UTF-8... done 113s Generation complete. 113s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 113s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ... 113s Setting up xxd (2:9.1.0016-1ubuntu5) ... 113s Setting up libsframe1:armhf (2.42-4ubuntu1) ... 113s Setting up libelf1t64:armhf (0.190-1.1build2) ... 113s Setting up libkrb5support0:armhf (1.20.1-5.1ubuntu1) ... 113s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 113s Setting up eject (2.39.3-9ubuntu2) ... 113s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 113s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 113s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 113s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 113s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 113s Installing new version of config file /etc/apparmor.d/code ... 113s Installing new version of config file /etc/apparmor.d/firefox ... 113s apparmor_parser: Unable to replace "lsb_release". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 113s 113s apparmor_parser: Unable to replace "kmod". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 113s 113s apparmor_parser: Unable to replace "nvidia_modprobe". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 113s 114s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory 114s Reloading AppArmor profiles 114s /sbin/apparmor_parser: Unable to replace "1password". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "Discord". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "MongoDB Compass". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "brave". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "buildah". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "busybox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "cam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "ch-checkns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "chrome". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "vscode". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "ch-run". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "devhelp". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "crun". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "element-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "epiphany". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "evolution". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "firefox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "geary". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "flatpak". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "goldendict". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "github-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "ipa_verify". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "kchmviewer". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lc-compliance". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "keybase". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "libcamerify". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "linux-sandbox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "loupe". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-attach". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-destroy". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-create". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-execute". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-stop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-unshare". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "mmdebstrap". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "msedge". /sbin/apparmor_parser: Unable to replace "nautilus". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "notepadqq". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "obsidian". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "opam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "opera". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "pageedit". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "podman". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "polypane". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "qcam". /sbin/apparmor_parser: Unable to replace "qmapshack". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "qutebrowser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "rootlesskit". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "rpm". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "rssguard". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "runc". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-abort". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-adduser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-apt". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-clean". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "plasmashell". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-hold". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-shell". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-unhold". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "sbuild-update". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "slack". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "scide". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "slirp4netns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "steam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "signal-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "stress-ng". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "surfshark". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "systemd-coredump". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "privacybrowser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "toybox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "trinity". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "thunderbird". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "tup". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "userbindmount". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "kmod". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "uwsgi-core". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "vdens". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "unprivileged_userns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "virtiofsd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "vpnns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "wpcom". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "lsb_release". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "vivaldi-bin". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "unix-chkpwd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "rsyslogd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "/usr/bin/man". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s /sbin/apparmor_parser: Unable to replace "tcpdump". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 114s 114s Error: At least one profile failed to load 114s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ... 114s No schema files found: doing nothing. 114s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 114s Setting up vim-common (2:9.1.0016-1ubuntu5) ... 114s Setting up gcc-13-base:armhf (13.2.0-19ubuntu1) ... 114s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ... 114s Setting up libslang2:armhf (2.3.3-3build1) ... 114s Setting up libnvme1t64 (1.8-3) ... 114s Setting up mtr-tiny (0.95-1.1build1) ... 114s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 114s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ... 114s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ... 114s Setting up xz-utils (5.6.0-0.2) ... 114s Setting up perl-modules-5.38 (5.38.2-3.2) ... 114s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ... 114s Setting up libpng16-16t64:armhf (1.6.43-3) ... 114s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 114s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ... 114s Setting up udev (255.4-1ubuntu5) ... 115s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ... 115s Setting up usb.ids (2024.03.18-1) ... 115s Setting up sudo (1.9.15p5-3ubuntu3) ... 115s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 115s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ... 115s Setting up libk5crypto3:armhf (1.20.1-5.1ubuntu1) ... 115s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 115s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ... 115s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ... 115s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ... 115s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ... 115s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ... 115s Setting up python-apt-common (2.7.6build1) ... 115s Setting up mount (2.39.3-9ubuntu2) ... 115s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 115s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 116s uuidd.service is a disabled or a static unit not running, not starting it. 116s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ... 116s Setting up groff-base (1.23.0-3build1) ... 116s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ... 116s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 116s Setting up kpartx (0.9.4-5ubuntu5) ... 116s Setting up jq (1.7.1-3) ... 116s Setting up gpgconf (2.4.4-2ubuntu15) ... 116s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ... 116s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ... 116s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ... 116s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 116s Setting up libkrb5-3:armhf (1.20.1-5.1ubuntu1) ... 116s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ... 116s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ... 116s Setting up libperl5.38t64:armhf (5.38.2-3.2) ... 116s Setting up tnftp (20230507-2build1) ... 116s Setting up libbinutils:armhf (2.42-4ubuntu1) ... 116s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 116s Setting up libfido2-1:armhf (1.14.0-1build1) ... 116s Setting up openssl (3.0.13-0ubuntu2) ... 116s Setting up libbsd0:armhf (0.12.1-1) ... 116s Setting up readline-common (8.2-3.1) ... 116s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ... 116s Setting up libxmuu1:armhf (2:1.1.3-3build1) ... 116s Setting up dbus-bin (1.14.10-4ubuntu2) ... 116s Setting up info (7.1-3build1) ... 116s Setting up liblocale-gettext-perl (1.07-6ubuntu3) ... 116s Setting up gpg (2.4.4-2ubuntu15) ... 116s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ... 116s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ... 116s Setting up libbpf1:armhf (1:1.3.0-2build1) ... 116s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ... 116s Setting up rsync (3.2.7-1build1) ... 117s rsync.service is a disabled or a static unit not running, not starting it. 117s Setting up libudisks2-0:armhf (2.10.1-6) ... 117s Setting up bolt (0.9.6-2build1) ... 117s bolt.service is a disabled or a static unit not running, not starting it. 117s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 117s Setting up initramfs-tools-bin (0.142ubuntu23) ... 117s Setting up libctf0:armhf (2.42-4ubuntu1) ... 117s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 117s Setting up python3.11-minimal (3.11.8-1build4) ... 118s Setting up tcpdump (4.99.4-3ubuntu2) ... 118s apparmor_parser: Unable to replace "tcpdump". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 118s 118s Setting up apt-utils (2.7.13ubuntu1) ... 118s Setting up gpg-agent (2.4.4-2ubuntu15) ... 119s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ... 119s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ... 119s Setting up wget (1.21.4-1ubuntu2) ... 119s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ... 119s Setting up plymouth (24.004.60-1ubuntu6) ... 119s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 119s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 119s Setting up libxmlb2:armhf (0.3.15-1build1) ... 119s Setting up btrfs-progs (6.6.3-1.1build1) ... 119s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ... 119s Setting up python3.12 (3.12.2-4build3) ... 120s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ... 120s Setting up gpgsm (2.4.4-2ubuntu15) ... 120s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 120s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 120s update-initramfs: deferring update (trigger activated) 121s e2scrub_all.service is a disabled or a static unit not running, not starting it. 121s Setting up libparted2t64:armhf (3.6-3.1build2) ... 121s Setting up linux-headers-generic (6.8.0-20.20+1) ... 121s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 121s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 121s Setting up vim-tiny (2:9.1.0016-1ubuntu5) ... 121s Setting up libnetplan1:armhf (1.0-1) ... 121s Setting up man-db (2.12.0-3build4) ... 121s Updating database of manual pages ... 122s apparmor_parser: Unable to replace "/usr/bin/man". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 122s 123s man-db.service is a disabled or a static unit not running, not starting it. 123s Setting up libblockdev3:armhf (3.1.0-1build1) ... 123s Setting up fdisk (2.39.3-9ubuntu2) ... 123s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ... 123s Setting up libblockdev-part3:armhf (3.1.0-1build1) ... 123s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ... 123s Setting up libftdi1-2:armhf (1.5-6build4) ... 123s Setting up perl (5.38.2-3.2) ... 123s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 123s update-initramfs: deferring update (trigger activated) 123s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ... 123s Setting up dbus (1.14.10-4ubuntu2) ... 123s A reboot is required to replace the running dbus-daemon. 123s Please reboot the system when convenient. 123s Setting up shared-mime-info (2.4-1build1) ... 123s Setting up libgssapi-krb5-2:armhf (1.20.1-5.1ubuntu1) ... 123s Setting up ftp (20230507-2build1) ... 123s Setting up keyboxd (2.4.4-2ubuntu15) ... 124s Setting up libdpkg-perl (1.22.6ubuntu4) ... 124s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ... 124s Setting up libssh-4:armhf (0.10.6-2build1) ... 124s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ... 124s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ... 124s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ... 124s Setting up netplan-generator (1.0-1) ... 124s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 124s Setting up initramfs-tools-core (0.142ubuntu23) ... 124s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ... 124s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ... 124s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ... 124s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ... 124s Setting up systemd-resolved (255.4-1ubuntu5) ... 124s Setting up python3.11 (3.11.8-1build4) ... 125s Setting up telnet (0.17+2.5-3ubuntu3) ... 125s Setting up initramfs-tools (0.142ubuntu23) ... 125s update-initramfs: deferring update (trigger activated) 125s Setting up libcurl4t64:armhf (8.5.0-2ubuntu7) ... 125s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ... 125s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ... 125s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 125s Setting up iproute2 (6.1.0-1ubuntu5) ... 125s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 125s Setting up libgusb2:armhf (0.4.8-1build1) ... 125s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ... 125s Setting up parted (3.6-3.1build2) ... 125s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ... 125s Setting up python3 (3.12.2-0ubuntu1) ... 126s Setting up binutils (2.42-4ubuntu1) ... 126s Setting up libjcat1:armhf (0.2.0-2build2) ... 126s Setting up dpkg-dev (1.22.6ubuntu4) ... 126s Setting up dirmngr (2.4.4-2ubuntu15) ... 126s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 126s Setting up python3-cryptography (41.0.7-4build2) ... 126s Setting up python3-gi (3.47.0-3build1) ... 126s Setting up python3-typing-extensions (4.10.0-1) ... 126s Setting up lsof (4.95.0-1build2) ... 126s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ... 127s Setting up libnsl2:armhf (1.3.0-3build2) ... 127s Setting up gnupg (2.4.4-2ubuntu15) ... 127s Setting up python3-netplan (1.0-1) ... 127s Setting up curl (8.5.0-2ubuntu7) ... 127s Setting up libvolume-key1:armhf (0.3.12-7build1) ... 127s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 127s Setting up python3-lib2to3 (3.12.2-3ubuntu2) ... 127s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 127s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 127s Setting up python3-dbus (1.3.2-5build2) ... 127s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 128s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 128s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 128s Replacing config file /etc/ssh/sshd_config with new version 130s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 131s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ... 131s Setting up python3-gdbm:armhf (3.12.2-3ubuntu2) ... 131s Setting up python3-apt (2.7.6build1) ... 131s Setting up libfwupd2:armhf (1.9.15-1) ... 131s Setting up python3-yaml (6.0.1-2build1) ... 131s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 131s Setting up netplan.io (1.0-1) ... 131s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 131s Setting up ubuntu-pro-client (31.2) ... 131s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 131s 132s Setting up fwupd (1.9.15-1) ... 133s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 133s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 133s fwupd.service is a disabled or a static unit not running, not starting it. 133s Setting up ubuntu-pro-client-l10n (31.2) ... 133s Setting up udisks2 (2.10.1-6) ... 133s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 133s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 133s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 133s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 133s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 133s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 133s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 133s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 133s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 133s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 133s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 133s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 133s Processing triggers for ufw (0.36.2-5) ... 133s Processing triggers for systemd (255.4-1ubuntu5) ... 133s Processing triggers for install-info (7.1-3build1) ... 133s Processing triggers for libc-bin (2.39-0ubuntu6) ... 133s Processing triggers for initramfs-tools (0.142ubuntu23) ... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s The following packages will be REMOVED: 136s linux-headers-6.8.0-11* python3-lib2to3* 136s 0 upgraded, 0 newly installed, 2 to remove and 1 not upgraded. 136s After this operation, 85.8 MB disk space will be freed. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78592 files and directories currently installed.) 136s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ... 137s Removing python3-lib2to3 (3.12.2-3ubuntu2) ... 139s autopkgtest [15:34:48]: rebooting testbed after setup commands that affected boot 177s autopkgtest [15:35:26]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024 201s autopkgtest [15:35:50]: @@@@@@@@@@@@@@@@@@@@ apt-source tombo 215s Get:1 http://ftpmaster.internal/ubuntu noble/universe tombo 1.5.1-6 (dsc) [2292 B] 215s Get:2 http://ftpmaster.internal/ubuntu noble/universe tombo 1.5.1-6 (tar) [22.3 MB] 215s Get:3 http://ftpmaster.internal/ubuntu noble/universe tombo 1.5.1-6 (diff) [7024 B] 215s gpgv: Signature made Sun Dec 17 19:23:46 2023 UTC 215s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 215s gpgv: issuer "tille@debian.org" 215s gpgv: Can't check signature: No public key 215s dpkg-source: warning: cannot verify inline signature for ./tombo_1.5.1-6.dsc: no acceptable signature found 216s autopkgtest [15:36:05]: testing package tombo version 1.5.1-6 218s autopkgtest [15:36:07]: build not needed 220s autopkgtest [15:36:09]: test run-unit-test: preparing testbed 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 230s Starting pkgProblemResolver with broken count: 0 230s Starting 2 pkgProblemResolver with broken count: 0 230s Done 230s The following additional packages will be installed: 230s fonts-font-awesome fonts-lato fonts-mathjax libaec0 libblas3 libgfortran5 230s libhdf5-103-1t64 libhdf5-hl-100t64 libjs-jquery libjs-mathjax 230s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 libsz2 230s python3-decorator python3-h5py python3-h5py-serial python3-mappy 230s python3-numpy python3-scipy python3-tqdm sphinx-rtd-theme-common tombo 230s tombo-doc 230s Suggested packages: 230s fonts-mathjax-extras fonts-stix libjs-mathjax-doc python-h5py-doc gcc 230s gfortran python3-dev python3-pytest python-scipy-doc 230s Recommended packages: 230s javascript-common g++ | c++-compiler python3-pil python3-pyfaidx 230s python3-rpy2 230s The following NEW packages will be installed: 230s autopkgtest-satdep fonts-font-awesome fonts-lato fonts-mathjax libaec0 230s libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 libjs-jquery 230s libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 230s libsz2 python3-decorator python3-h5py python3-h5py-serial python3-mappy 230s python3-numpy python3-scipy python3-tqdm sphinx-rtd-theme-common tombo 230s tombo-doc 230s 0 upgraded, 27 newly installed, 0 to remove and 1 not upgraded. 230s Need to get 62.1 MB/62.1 MB of archives. 230s After this operation, 192 MB of additional disk space will be used. 230s Get:1 /tmp/autopkgtest.1aYpB0/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [708 B] 230s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf fonts-lato all 2.015-1 [2781 kB] 231s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 231s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 231s Get:5 http://ftpmaster.internal/ubuntu noble/universe armhf libaec0 armhf 1.1.2-1 [20.7 kB] 231s Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB] 231s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran5 armhf 14-20240315-1ubuntu1 [312 kB] 231s Get:8 http://ftpmaster.internal/ubuntu noble/universe armhf libsz2 armhf 1.1.2-1 [5262 B] 231s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu3 [1337 kB] 231s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu3 [54.8 kB] 231s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 231s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 231s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjs-sphinxdoc all 7.2.6-6 [149 kB] 231s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB] 231s Get:15 http://ftpmaster.internal/ubuntu noble/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [27.1 kB] 231s Get:16 http://ftpmaster.internal/ubuntu noble/universe armhf liblzf1 armhf 3.6-4 [6554 B] 231s Get:17 http://ftpmaster.internal/ubuntu noble/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 231s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-numpy armhf 1:1.24.2-3ubuntu1 [3610 kB] 231s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf python3-h5py-serial armhf 3.10.0-1ubuntu2 [877 kB] 231s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf python3-h5py all 3.10.0-1ubuntu2 [7980 B] 231s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf python3-mappy armhf 2.26+dfsg-1 [170 kB] 231s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf python3-tqdm all 4.66.2-2 [91.1 kB] 231s Get:23 http://ftpmaster.internal/ubuntu noble/main armhf sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1012 kB] 231s Get:24 http://ftpmaster.internal/ubuntu noble/universe armhf python3-scipy armhf 1.11.4-6 [18.4 MB] 232s Get:25 http://ftpmaster.internal/ubuntu noble/universe armhf tombo armhf 1.5.1-6 [492 kB] 232s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 232s Get:27 http://ftpmaster.internal/ubuntu noble/universe armhf tombo-doc all 1.5.1-6 [21.7 MB] 233s Fetched 62.1 MB in 2s (27.7 MB/s) 233s Selecting previously unselected package fonts-lato. 233s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58435 files and directories currently installed.) 233s Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ... 233s Unpacking fonts-lato (2.015-1) ... 233s Selecting previously unselected package fonts-font-awesome. 233s Preparing to unpack .../01-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 233s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 233s Selecting previously unselected package fonts-mathjax. 233s Preparing to unpack .../02-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 233s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 233s Selecting previously unselected package libaec0:armhf. 233s Preparing to unpack .../03-libaec0_1.1.2-1_armhf.deb ... 233s Unpacking libaec0:armhf (1.1.2-1) ... 233s Selecting previously unselected package libblas3:armhf. 233s Preparing to unpack .../04-libblas3_3.12.0-3_armhf.deb ... 233s Unpacking libblas3:armhf (3.12.0-3) ... 233s Selecting previously unselected package libgfortran5:armhf. 233s Preparing to unpack .../05-libgfortran5_14-20240315-1ubuntu1_armhf.deb ... 233s Unpacking libgfortran5:armhf (14-20240315-1ubuntu1) ... 233s Selecting previously unselected package libsz2:armhf. 233s Preparing to unpack .../06-libsz2_1.1.2-1_armhf.deb ... 233s Unpacking libsz2:armhf (1.1.2-1) ... 233s Selecting previously unselected package libhdf5-103-1t64:armhf. 233s Preparing to unpack .../07-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_armhf.deb ... 233s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu3) ... 233s Selecting previously unselected package libhdf5-hl-100t64:armhf. 233s Preparing to unpack .../08-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu3_armhf.deb ... 233s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu3) ... 234s Selecting previously unselected package libjs-jquery. 234s Preparing to unpack .../09-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 234s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 234s Selecting previously unselected package libjs-underscore. 234s Preparing to unpack .../10-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 234s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 234s Selecting previously unselected package libjs-sphinxdoc. 234s Preparing to unpack .../11-libjs-sphinxdoc_7.2.6-6_all.deb ... 234s Unpacking libjs-sphinxdoc (7.2.6-6) ... 234s Selecting previously unselected package liblapack3:armhf. 234s Preparing to unpack .../12-liblapack3_3.12.0-3_armhf.deb ... 234s Unpacking liblapack3:armhf (3.12.0-3) ... 234s Selecting previously unselected package liblbfgsb0:armhf. 234s Preparing to unpack .../13-liblbfgsb0_3.0+dfsg.4-1_armhf.deb ... 234s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1) ... 234s Selecting previously unselected package liblzf1:armhf. 234s Preparing to unpack .../14-liblzf1_3.6-4_armhf.deb ... 234s Unpacking liblzf1:armhf (3.6-4) ... 234s Selecting previously unselected package python3-decorator. 234s Preparing to unpack .../15-python3-decorator_5.1.1-5_all.deb ... 234s Unpacking python3-decorator (5.1.1-5) ... 234s Selecting previously unselected package python3-numpy. 234s Preparing to unpack .../16-python3-numpy_1%3a1.24.2-3ubuntu1_armhf.deb ... 234s Unpacking python3-numpy (1:1.24.2-3ubuntu1) ... 234s Selecting previously unselected package python3-h5py-serial. 234s Preparing to unpack .../17-python3-h5py-serial_3.10.0-1ubuntu2_armhf.deb ... 234s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ... 234s Selecting previously unselected package python3-h5py. 234s Preparing to unpack .../18-python3-h5py_3.10.0-1ubuntu2_all.deb ... 234s Unpacking python3-h5py (3.10.0-1ubuntu2) ... 234s Selecting previously unselected package python3-mappy. 234s Preparing to unpack .../19-python3-mappy_2.26+dfsg-1_armhf.deb ... 234s Unpacking python3-mappy (2.26+dfsg-1) ... 234s Selecting previously unselected package python3-tqdm. 234s Preparing to unpack .../20-python3-tqdm_4.66.2-2_all.deb ... 234s Unpacking python3-tqdm (4.66.2-2) ... 234s Selecting previously unselected package sphinx-rtd-theme-common. 234s Preparing to unpack .../21-sphinx-rtd-theme-common_2.0.0+dfsg-1_all.deb ... 234s Unpacking sphinx-rtd-theme-common (2.0.0+dfsg-1) ... 234s Selecting previously unselected package python3-scipy. 234s Preparing to unpack .../22-python3-scipy_1.11.4-6_armhf.deb ... 234s Unpacking python3-scipy (1.11.4-6) ... 235s Selecting previously unselected package tombo. 235s Preparing to unpack .../23-tombo_1.5.1-6_armhf.deb ... 235s Unpacking tombo (1.5.1-6) ... 235s Selecting previously unselected package libjs-mathjax. 235s Preparing to unpack .../24-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 235s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 235s Selecting previously unselected package tombo-doc. 235s Preparing to unpack .../25-tombo-doc_1.5.1-6_all.deb ... 235s Unpacking tombo-doc (1.5.1-6) ... 236s Selecting previously unselected package autopkgtest-satdep. 236s Preparing to unpack .../26-1-autopkgtest-satdep.deb ... 236s Unpacking autopkgtest-satdep (0) ... 236s Setting up fonts-lato (2.015-1) ... 236s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 236s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 236s Setting up python3-tqdm (4.66.2-2) ... 236s Setting up python3-mappy (2.26+dfsg-1) ... 236s Setting up libaec0:armhf (1.1.2-1) ... 236s Setting up python3-decorator (5.1.1-5) ... 236s Setting up libblas3:armhf (3.12.0-3) ... 236s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide 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autopkgtest-satdep (0) ... 263s autopkgtest [15:36:52]: test run-unit-test: [----------------------- 264s ********* Testing help commands ********** 265s usage: tombo [-h] [-v] 265s {resquiggle,preprocess,filter,detect_modifications,text_output,build_model,plot} 265s ... 265s 265s ********** Tombo ********* 265s 265s Tombo is a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data. 265s 265s Tombo also provides tools for the analysis and visualization of raw nanopore signal. 265s 265s Tombo command groups (additional help available within each command group): 265s resquiggle Re-annotate raw signal with genomic alignment from existing basecalls. 265s preprocess Pre-process nanopore reads for Tombo processing. 265s filter Apply filter to Tombo index file for specified criterion. 265s detect_modifications Perform statistical testing to detect non-standard nucleotides. 265s text_output Output Tombo results in text files. 265s build_model Create canonical and alternative base Tombo models. 265s plot Save plots to visualize raw nanopore signal or testing results. 265s 265s options: 265s -h, --help show this help message and exit 265s -v, --version show Tombo version and exit. 265s usage: tombo resquiggle [--dna] [--rna] 265s [--obs-per-base-filter OBS_PER_BASE_FILTER [OBS_PER_BASE_FILTER ...]] 265s [--q-score Q_SCORE] 265s [--signal-matching-score SIGNAL_MATCHING_SCORE] 265s [--processes PROCESSES] 265s [--corrected-group CORRECTED_GROUP] 265s [--basecall-group BASECALL_GROUP] 265s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 265s [--overwrite] 265s [--failed-reads-filename FAILED_READS_FILENAME] 265s [--num-most-common-errors NUM_MOST_COMMON_ERRORS] 265s [--print-advanced-arguments] [--quiet] [--help] 265s fast5s_basedir reference 265s 265s Required Arguments: 265s fast5s_basedir Directory containing fast5 files. All files ending in 265s "fast5" found recursively within this base directory 265s will be processed. 265s reference Reference genome/transcriptome FASTA file or minimap2 265s index (with "map-ont" preset) for mapping. 265s 265s Model Parameters: 265s --dna Explicitly select canonical DNA model. Default: 265s Automatically determine from FAST5s 265s --rna Explicitly select canonical RNA model. Default: 265s Automatically determine from FAST5s 265s 265s Read Filtering Argument: 265s --obs-per-base-filter OBS_PER_BASE_FILTER [OBS_PER_BASE_FILTER ...] 265s Filter reads based on observations per base percentile 265s thresholds. Format thresholds as "percentile:thresh 265s [pctl2:thresh2 ...]". For example to filter reads with 265s 99th pctl > 200 obs/base or max > 5k obs/base use 265s "99:200 100:5000". 265s --q-score Q_SCORE Q-score threshold for filtering low quality reads. 265s Default: 0.000000 265s --signal-matching-score SIGNAL_MATCHING_SCORE 265s Observed to expected signal matching score (higher 265s score indicates poor matching). Sample type defaults: 265s RNA : 2 || DNA : 1.1 265s 265s Multiprocessing Arguments: 265s --processes PROCESSES 265s Number of processes. Default: 1 265s 265s FAST5 Data Arguments: 265s --corrected-group CORRECTED_GROUP 265s FAST5 group created by resquiggle command. Default: 265s RawGenomeCorrected_000 265s --basecall-group BASECALL_GROUP 265s FAST5 group obtain original basecalls (under Analyses 265s group). Default: Basecall_1D_000 265s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 265s FAST5 subgroup(s) (under /Analyses/[--basecall- 265s group]/) containing basecalls and created within 265s [--corrected-group] containing re-squiggle results. 265s Default: ['BaseCalled_template'] 265s --overwrite Overwrite previous corrected group in FAST5 files. 265s Note: only effects --corrected-group or --new- 265s corrected-group. 265s 265s Input/Output Arguments: 265s --failed-reads-filename FAILED_READS_FILENAME 265s Output failed read filenames with assoicated error. 265s Default: Do not store failed reads. 265s --num-most-common-errors NUM_MOST_COMMON_ERRORS 265s Dynamically show this many most common errors so far 265s through run. Default: 0; Just show progress 265s 265s Advanced Arguments: 265s --print-advanced-arguments 265s Print advanced re-squiggle arguments and exit. 265s 265s Miscellaneous Arguments: 265s --quiet, -q Don't print status information. 265s --help, -h Print this help message and exit 265s usage: tombo preprocess annotate_raw_with_fastqs --fast5-basedir FAST5_BASEDIR 265s --fastq-filenames 265s FASTQ_FILENAMES 265s [FASTQ_FILENAMES ...] 265s [--basecall-group BASECALL_GROUP] 265s [--basecall-subgroup BASECALL_SUBGROUP] 265s [--overwrite] 265s [--sequencing-summary-filenames SEQUENCING_SUMMARY_FILENAMES [SEQUENCING_SUMMARY_FILENAMES ...]] 265s [--processes PROCESSES] 265s [--quiet] [--help] 265s 265s Required Arguments: 265s --fast5-basedir FAST5_BASEDIR 265s Directory containing fast5 files. 265s --fastq-filenames FASTQ_FILENAMES [FASTQ_FILENAMES ...] 265s FASTQ filenames containing basecalls to be added to 265s raw FAST5 files. 265s 265s FAST5 Data Arguments: 265s --basecall-group BASECALL_GROUP 265s FAST5 group obtain original basecalls (under Analyses 265s group). Default: Basecall_1D_000 265s --basecall-subgroup BASECALL_SUBGROUP 265s FAST5 subgroup (under /Analyses/[--basecall-group]/) 265s under which to store basecalls from FASTQs. Default: 265s BaseCalled_template 265s --overwrite Overwrite previous corrected group in FAST5 files. 265s Note: only effects --corrected-group or --new- 265s corrected-group. 265s 265s Sequencing Summary Argument: 265s --sequencing-summary-filenames SEQUENCING_SUMMARY_FILENAMES [SEQUENCING_SUMMARY_FILENAMES ...] 265s Sequencing summary filenames produced by albacore. 265s These can make annotation of raw FAST5 files with 265s FASTQ sequence much faster. 265s 265s Multiprocessing Argument: 265s --processes PROCESSES 265s Number of processes. Default: 1 265s 265s Miscellaneous Arguments: 265s --quiet, -q Don't print status information. 265s --help, -h Print this help message and exit 265s usage: tombo filter clear_filters --fast5-basedirs FAST5_BASEDIRS 265s [FAST5_BASEDIRS ...] 265s [--corrected-group CORRECTED_GROUP] 265s [--quiet] [--help] 265s 265s Required Argument: 265s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 265s Directories containing fast5 files. 265s 265s FAST5 Data Argument: 265s --corrected-group CORRECTED_GROUP 265s FAST5 group created by resquiggle command. Default: 265s RawGenomeCorrected_000 265s 265s Miscellaneous Arguments: 265s --quiet, -q Don't print status information. 265s --help, -h Print this help message and exit 265s usage: tombo filter stuck --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 265s [--obs-per-base-filter OBS_PER_BASE_FILTER [OBS_PER_BASE_FILTER ...]] 265s [--corrected-group CORRECTED_GROUP] [--quiet] 265s [--help] 265s 265s Required Argument: 265s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 265s Directories containing fast5 files. 265s 265s Read Filtering Argument: 265s --obs-per-base-filter OBS_PER_BASE_FILTER [OBS_PER_BASE_FILTER ...] 265s Filter reads based on observations per base percentile 265s thresholds. Format thresholds as "percentile:thresh 265s [pctl2:thresh2 ...]". For example to filter reads with 265s 99th pctl > 200 obs/base or max > 5k obs/base use 265s "99:200 100:5000". 265s 265s FAST5 Data Argument: 265s --corrected-group CORRECTED_GROUP 265s FAST5 group created by resquiggle command. Default: 265s RawGenomeCorrected_000 265s 265s Miscellaneous Arguments: 265s --quiet, -q Don't print status information. 265s --help, -h Print this help message and exit 265s usage: tombo filter level_coverage --fast5-basedirs FAST5_BASEDIRS 265s [FAST5_BASEDIRS ...] 265s [--percent-to-filter PERCENT_TO_FILTER] 265s [--corrected-group CORRECTED_GROUP] 265s [--quiet] [--help] 265s 265s Required Arguments: 265s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 265s Directories containing fast5 files. 265s 265s Read Filtering Argument: 265s --percent-to-filter PERCENT_TO_FILTER 265s Percentage of all reads to filter. Reads are randomly 265s selected weighted according to the approximate 265s coverage at the mapped genomic location. This can be 265s useful in modeling and testing. Default: 10.000000 265s 265s FAST5 Data Arguments: 265s --corrected-group CORRECTED_GROUP 265s FAST5 group created by resquiggle command. Default: 265s RawGenomeCorrected_000 265s 265s Miscellaneous Arguments: 265s --quiet, -q Don't print status information. 265s --help, -h Print this help message and exit 266s usage: tombo filter q_score --fast5-basedirs FAST5_BASEDIRS 266s [FAST5_BASEDIRS ...] [--q-score Q_SCORE] 266s [--corrected-group CORRECTED_GROUP] 266s [--basecall-group BASECALL_GROUP] [--quiet] 266s [--help] 266s 266s Required Arguments: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s 266s Read Filtering Argument: 266s --q-score Q_SCORE Q-score threshold for filtering low quality reads. 266s Default: 7.000000 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s --basecall-group BASECALL_GROUP 266s FAST5 group obtain original basecalls (under Analyses 266s group). Default: Basecall_1D_000 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo filter raw_signal_matching --fast5-basedirs FAST5_BASEDIRS 266s [FAST5_BASEDIRS ...] 266s --signal-matching-score 266s SIGNAL_MATCHING_SCORE 266s [--corrected-group CORRECTED_GROUP] 266s [--quiet] [--help] 266s 266s Required Arguments: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s --signal-matching-score SIGNAL_MATCHING_SCORE 266s Observed to expected signal matching score (higher 266s score indicates poor matching). Sample type defaults: 266s RNA : 2 || DNA : 1.1 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo filter genome_locations --fast5-basedirs FAST5_BASEDIRS 266s [FAST5_BASEDIRS ...] 266s [--include-regions INCLUDE_REGIONS [INCLUDE_REGIONS ...]] 266s [--include-partial-overlap] 266s [--corrected-group CORRECTED_GROUP] 266s [--quiet] [--help] 266s 266s Required Arguments: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s --include-regions INCLUDE_REGIONS [INCLUDE_REGIONS ...] 266s Filter out reads not falling completely within include 266s regions. Omit start and end coordinates to include an 266s entire chromosome/sequence record. Format regions as 266s "chrm[:start-end] [chrm2[:start2-end2] ...]". 266s 266s Filter Argument: 266s --include-partial-overlap 266s Include reads that partially overlap the specified 266s region. Default: Only include reads completely 266s contained in a specified region 266s 266s FAST5 Data Argument: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo detect_modifications de_novo --fast5-basedirs FAST5_BASEDIRS 266s [FAST5_BASEDIRS ...] 266s --statistics-file-basename 266s STATISTICS_FILE_BASENAME [--dna] 266s [--rna] 266s [--fishers-method-context FISHERS_METHOD_CONTEXT] 266s [--minimum-test-reads MINIMUM_TEST_READS] 266s [--single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...]] 266s [--coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS] 266s [--per-read-statistics-basename PER_READ_STATISTICS_BASENAME] 266s [--num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED] 266s [--multiprocess-region-size MULTIPROCESS_REGION_SIZE] 266s [--processes PROCESSES] 266s [--corrected-group CORRECTED_GROUP] 266s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 266s [--quiet] [--help] 266s 266s Required Argument: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s --statistics-file-basename STATISTICS_FILE_BASENAME 266s File base name to save base by base statistics from 266s testing. Filenames will be [--statistics-file- 266s basename].[--alternate-bases]?.tombo.stats 266s 266s Comparison Model Arguments: 266s --dna Explicitly select canonical DNA model. Default: 266s Automatically determine from FAST5s 266s --rna Explicitly select canonical RNA model. Default: 266s Automatically determine from FAST5s 266s 266s Significance Test Arguments: 266s --fishers-method-context FISHERS_METHOD_CONTEXT 266s Number of context bases up and downstream over which 266s to compute Fisher's method combined p-values. Note: 266s Not applicable for alternative model likelihood ratio 266s tests. Default: 1. 266s --minimum-test-reads MINIMUM_TEST_READS 266s Number of reads required at a position to perform 266s significance testing or contribute to model 266s estimation. Default: 1 266s --single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...] 266s P-value threshold when computing fraction of 266s significant reads at each genomic position. If two 266s values are provided, statistics between these values 266s are not considered. Default thresholds: DNA:0.15-0.5 , 266s RNA:0.05-0.4 266s --coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS 266s Dampen fraction modified estimates for low coverage 266s sites. Two parameters are unmodified and modified 266s pseudo read counts. This is equivalent to a beta prior 266s on the fraction estimate. Set to "0 0" to disable 266s dampened fraction estimation. Default: [2, 0] 266s 266s Output Argument: 266s --per-read-statistics-basename PER_READ_STATISTICS_BASENAME 266s Base for binary files containing per-read statistics 266s from statistical testing. Filenames will be [--per- 266s read-statistics-basename].[--alternate- 266s bases]?.tombo.per_read_stats 266s --num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED 266s Number of the most significant sites to store for 266s faster access. If a longer list of most significant 266s sites is required the list must be re-computed from 266s all batches. Very large values can increase RAM usage. 266s Default: 100000 266s 266s Multiprocessing Arguments: 266s --multiprocess-region-size MULTIPROCESS_REGION_SIZE 266s Size of regions over which to multiprocesses statistic 266s computation. For very deep samples a smaller value is 266s recommmended in order to control memory consumption. 266s Default: 10000 266s --processes PROCESSES 266s Number of processes. Default: 1 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 266s FAST5 subgroup(s) (under /Analyses/[--basecall- 266s group]/) containing basecalls and created within 266s [--corrected-group] containing re-squiggle results. 266s Default: ['BaseCalled_template'] 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo detect_modifications alternative_model 266s [--fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...]] 266s [--statistics-file-basename STATISTICS_FILE_BASENAME] 266s [--alternate-bases {CpG,dam,5mC,6mA,dcm} [{CpG,dam,5mC,6mA,dcm} ...]] 266s [--print-available-models] 266s [--dna] [--rna] 266s [--minimum-test-reads MINIMUM_TEST_READS] 266s [--single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...]] 266s [--standard-log-likelihood-ratio] 266s [--coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS] 266s [--per-read-statistics-basename PER_READ_STATISTICS_BASENAME] 266s [--num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED] 266s [--multiprocess-region-size MULTIPROCESS_REGION_SIZE] 266s [--processes PROCESSES] 266s [--corrected-group CORRECTED_GROUP] 266s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 266s [--quiet] [--help] 266s 266s Required Argument: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s --statistics-file-basename STATISTICS_FILE_BASENAME 266s File base name to save base by base statistics from 266s testing. Filenames will be [--statistics-file- 266s basename].[--alternate-bases]?.tombo.stats 266s --alternate-bases {CpG,dam,5mC,6mA,dcm} [{CpG,dam,5mC,6mA,dcm} ...] 266s Default non-standard base model for testing (not 266s required if user created --alternate-model-filenames 266s is provided). 266s 266s Comparison Arguments: 266s --print-available-models 266s Print available alternative models and exit. 266s --dna Explicitly select canonical DNA model. Default: 266s Automatically determine from FAST5s 266s --rna Explicitly select canonical RNA model. Default: 266s Automatically determine from FAST5s 266s 266s Significance Test Arguments: 266s --minimum-test-reads MINIMUM_TEST_READS 266s Number of reads required at a position to perform 266s significance testing or contribute to model 266s estimation. Default: 1 266s --single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...] 266s Log likelihood ratio threshold when computing fraction 266s of significant reads at each genomic position. If two 266s values are provided, statistics between these values 266s are not considered. Default thresholds: DNA:-1.5-2.5 , 266s RNA:-2.5-2.5 266s --standard-log-likelihood-ratio 266s Use a standard log likelihood ratio (LLR) statistic. 266s Default is to use an outlier-robust LLR-like 266s statistic. Detail in full online documentation. 266s --coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS 266s Dampen fraction modified estimates for low coverage 266s sites. Two parameters are unmodified and modified 266s pseudo read counts. This is equivalent to a beta prior 266s on the fraction estimate. Set to "0 0" to disable 266s dampened fraction estimation. Default: [2, 0] 266s 266s Output Argument: 266s --per-read-statistics-basename PER_READ_STATISTICS_BASENAME 266s Base for binary files containing per-read statistics 266s from statistical testing. Filenames will be [--per- 266s read-statistics-basename].[--alternate- 266s bases]?.tombo.per_read_stats 266s --num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED 266s Number of the most significant sites to store for 266s faster access. If a longer list of most significant 266s sites is required the list must be re-computed from 266s all batches. Very large values can increase RAM usage. 266s Default: 100000 266s 266s Multiprocessing Arguments: 266s --multiprocess-region-size MULTIPROCESS_REGION_SIZE 266s Size of regions over which to multiprocesses statistic 266s computation. For very deep samples a smaller value is 266s recommmended in order to control memory consumption. 266s Default: 10000 266s --processes PROCESSES 266s Number of processes. Default: 1 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 266s FAST5 subgroup(s) (under /Analyses/[--basecall- 266s group]/) containing basecalls and created within 266s [--corrected-group] containing re-squiggle results. 266s Default: ['BaseCalled_template'] 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo detect_modifications model_sample_compare --fast5-basedirs 266s FAST5_BASEDIRS 266s [FAST5_BASEDIRS ...] 266s --statistics-file-basename 266s STATISTICS_FILE_BASENAME 266s --control-fast5-basedirs 266s CONTROL_FAST5_BASEDIRS 266s [CONTROL_FAST5_BASEDIRS ...] 266s [--sample-only-estimates] 266s [--model-prior-weights MODEL_PRIOR_WEIGHTS MODEL_PRIOR_WEIGHTS] 266s [--dna] [--rna] 266s [--fishers-method-context FISHERS_METHOD_CONTEXT] 266s [--minimum-test-reads MINIMUM_TEST_READS] 266s [--single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...]] 266s [--coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS] 266s [--per-read-statistics-basename PER_READ_STATISTICS_BASENAME] 266s [--num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED] 266s [--multiprocess-region-size MULTIPROCESS_REGION_SIZE] 266s [--processes PROCESSES] 266s [--corrected-group CORRECTED_GROUP] 266s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 266s [--quiet] [--help] 266s 266s Required Argument: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s --statistics-file-basename STATISTICS_FILE_BASENAME 266s File base name to save base by base statistics from 266s testing. Filenames will be [--statistics-file- 266s basename].[--alternate-bases]?.tombo.stats 266s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 266s Set of directories containing fast5 files for control 266s reads, containing only canonical nucleotides. 266s 266s Model Prior Arguments: 266s --sample-only-estimates 266s Only use canonical sample to estimate expected signal 266s level and spread. Default: Use canonical model to 266s improve estimtates (esp. for low coverage regions) 266s using baysian posterior estimates. 266s --model-prior-weights MODEL_PRIOR_WEIGHTS MODEL_PRIOR_WEIGHTS 266s Prior weights (one each for mean and spread) applied 266s to canonical base model for estimating posterior model 266s parameters for sample comparison. Default: [5, 40] 266s --dna Explicitly select canonical DNA model. Default: 266s Automatically determine from FAST5s 266s --rna Explicitly select canonical RNA model. Default: 266s Automatically determine from FAST5s 266s 266s Significance Test Arguments: 266s --fishers-method-context FISHERS_METHOD_CONTEXT 266s Number of context bases up and downstream over which 266s to compute Fisher's method combined p-values. Note: 266s Not applicable for alternative model likelihood ratio 266s tests. Default: 1. 266s --minimum-test-reads MINIMUM_TEST_READS 266s Number of reads required at a position to perform 266s significance testing or contribute to model 266s estimation. Default: 1 266s --single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...] 266s P-value threshold when computing fraction of 266s significant reads at each genomic position. If two 266s values are provided, statistics between these values 266s are not considered. Default thresholds: DNA:0.15-0.5 , 266s RNA:0.05-0.4 266s --coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS 266s Dampen fraction modified estimates for low coverage 266s sites. Two parameters are unmodified and modified 266s pseudo read counts. This is equivalent to a beta prior 266s on the fraction estimate. Set to "0 0" to disable 266s dampened fraction estimation. Default: [2, 0] 266s 266s Output Argument: 266s --per-read-statistics-basename PER_READ_STATISTICS_BASENAME 266s Base for binary files containing per-read statistics 266s from statistical testing. Filenames will be [--per- 266s read-statistics-basename].[--alternate- 266s bases]?.tombo.per_read_stats 266s --num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED 266s Number of the most significant sites to store for 266s faster access. If a longer list of most significant 266s sites is required the list must be re-computed from 266s all batches. Very large values can increase RAM usage. 266s Default: 100000 266s 266s Multiprocessing Arguments: 266s --multiprocess-region-size MULTIPROCESS_REGION_SIZE 266s Size of regions over which to multiprocesses statistic 266s computation. For very deep samples a smaller value is 266s recommmended in order to control memory consumption. 266s Default: 10000 266s --processes PROCESSES 266s Number of processes. Default: 1 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 266s FAST5 subgroup(s) (under /Analyses/[--basecall- 266s group]/) containing basecalls and created within 266s [--corrected-group] containing re-squiggle results. 266s Default: ['BaseCalled_template'] 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo detect_modifications level_sample_compare --fast5-basedirs 266s FAST5_BASEDIRS 266s [FAST5_BASEDIRS ...] 266s --statistics-file-basename 266s STATISTICS_FILE_BASENAME 266s --alternate-fast5-basedirs 266s ALTERNATE_FAST5_BASEDIRS 266s [ALTERNATE_FAST5_BASEDIRS ...] 266s [--fishers-method-context FISHERS_METHOD_CONTEXT] 266s [--minimum-test-reads MINIMUM_TEST_READS] 266s [--statistic-type {ks,u,t}] 266s [--store-p-value] 266s [--num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED] 266s [--multiprocess-region-size MULTIPROCESS_REGION_SIZE] 266s [--processes PROCESSES] 266s [--corrected-group CORRECTED_GROUP] 266s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 266s [--quiet] [--help] 266s 266s Required Argument: 266s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 266s Directories containing fast5 files. 266s --statistics-file-basename STATISTICS_FILE_BASENAME 266s File base name to save base by base statistics from 266s testing. Filenames will be [--statistics-file- 266s basename].[--alternate-bases]?.tombo.stats 266s --alternate-fast5-basedirs ALTERNATE_FAST5_BASEDIRS [ALTERNATE_FAST5_BASEDIRS ...] 266s Set of directories containing fast5 files for 266s alternate set of reads. 266s 266s Significance Test Arguments: 266s --fishers-method-context FISHERS_METHOD_CONTEXT 266s Number of context bases up and downstream over which 266s to compute Fisher's method combined p-values. Note: 266s Not applicable for alternative model likelihood ratio 266s tests. Default: 1. 266s --minimum-test-reads MINIMUM_TEST_READS 266s Number of reads required at a position to perform 266s significance testing or contribute to model 266s estimation. Default: 50 266s --statistic-type {ks,u,t} 266s Type of statistical test to apply. Default: "ks" 266s --store-p-value Store p-value instead of effect-size statistic. 266s Statistics are D-statistic (KS-test), deviation from 266s even common language effect size (u-test), and Cohen's 266s D (t-test). 266s 266s Output Argument: 266s --num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED 266s Number of the most significant sites to store for 266s faster access. If a longer list of most significant 266s sites is required the list must be re-computed from 266s all batches. Very large values can increase RAM usage. 266s Default: 100000 266s 266s Multiprocessing Arguments: 266s --multiprocess-region-size MULTIPROCESS_REGION_SIZE 266s Size of regions over which to multiprocesses statistic 266s computation. For very deep samples a smaller value is 266s recommmended in order to control memory consumption. 266s Default: 10000 266s --processes PROCESSES 266s Number of processes. Default: 1 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 266s FAST5 subgroup(s) (under /Analyses/[--basecall- 266s group]/) containing basecalls and created within 266s [--corrected-group] containing re-squiggle results. 266s Default: ['BaseCalled_template'] 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 266s usage: tombo detect_modifications aggregate_per_read_stats 266s --per-read-statistics-filename 266s PER_READ_STATISTICS_FILENAME 266s --statistics-filename 266s STATISTICS_FILENAME 266s --single-read-threshold 266s SINGLE_READ_THRESHOLD 266s [SINGLE_READ_THRESHOLD ...] 266s [--minimum-test-reads MINIMUM_TEST_READS] 266s [--coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS] 266s [--num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED] 266s [--processes PROCESSES] 266s [--corrected-group CORRECTED_GROUP] 266s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 266s [--quiet] [--help] 266s 266s Required Argument: 266s --per-read-statistics-filename PER_READ_STATISTICS_FILENAME 266s Binary file containing per-read statistics from 266s statistical testing. 266s --statistics-filename STATISTICS_FILENAME 266s File to save/load genomic base anchored statistics. 266s --single-read-threshold SINGLE_READ_THRESHOLD [SINGLE_READ_THRESHOLD ...] 266s P-value or log likelihood ratio threshold when 266s computing fraction of significant reads at each 266s genomic position. If two values are provided, 266s statistics between these values are not considered. 266s 266s Significance Test Arguments: 266s --minimum-test-reads MINIMUM_TEST_READS 266s Number of reads required at a position to perform 266s significance testing or contribute to model 266s estimation. Default: 1 266s --coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS 266s Dampen fraction modified estimates for low coverage 266s sites. Two parameters are unmodified and modified 266s pseudo read counts. This is equivalent to a beta prior 266s on the fraction estimate. Set to "0 0" to disable 266s dampened fraction estimation. Default: [2, 0] 266s 266s Output Argument: 266s --num-most-significant-stored NUM_MOST_SIGNIFICANT_STORED 266s Number of the most significant sites to store for 266s faster access. If a longer list of most significant 266s sites is required the list must be re-computed from 266s all batches. Very large values can increase RAM usage. 266s Default: 100000 266s 266s Multiprocessing Arguments: 266s --processes PROCESSES 266s Number of processes. Default: 1 266s 266s FAST5 Data Arguments: 266s --corrected-group CORRECTED_GROUP 266s FAST5 group created by resquiggle command. Default: 266s RawGenomeCorrected_000 266s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 266s FAST5 subgroup(s) (under /Analyses/[--basecall- 266s group]/) containing basecalls and created within 266s [--corrected-group] containing re-squiggle results. 266s Default: ['BaseCalled_template'] 266s 266s Miscellaneous Arguments: 266s --quiet, -q Don't print status information. 266s --help, -h Print this help message and exit 267s usage: tombo text_output browser_files 267s [--fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...]] 267s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 267s [--statistics-filename STATISTICS_FILENAME] 267s [--genome-fasta GENOME_FASTA] 267s [--motif-descriptions MOTIF_DESCRIPTIONS [MOTIF_DESCRIPTIONS ...]] 267s [--browser-file-basename BROWSER_FILE_BASENAME] 267s [--file-types {coverage,valid_coverage,fraction,dampened_fraction,signal,signal_sd,dwell,difference,statistic} [{coverage,valid_coverage,fraction,dampened_fraction,signal,signal_sd,dwell,difference,statistic} ...]] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Data Arguments: 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 267s Set of directories containing fast5 files for control 267s reads, containing only canonical nucleotides. 267s --statistics-filename STATISTICS_FILENAME 267s File to save/load genomic base anchored statistics. 267s 267s Statistic Motif Filter Arguments: 267s --genome-fasta GENOME_FASTA 267s FASTA file used to re-squiggle. For faster sequence 267s access. 267s --motif-descriptions MOTIF_DESCRIPTIONS [MOTIF_DESCRIPTIONS ...] 267s Ground truth, motif centered, modified base 267s descriptions for output filtering. Format descriptions 267s as: "motif:mod_pos:name". The mod_pos indicates the 267s modified base within the motif (1-based index). 267s Example: CCWGG:2:dcm_5mC GATC:2:dam_6mA would filter 267s output for identification of E. coli dam and dcm 267s methylation. 267s 267s Output Arguments: 267s --browser-file-basename BROWSER_FILE_BASENAME 267s Basename for output browser files. Two files (plus and 267s minus strand) will be produced for each --file-types 267s supplied. Filenames formatted as "[browser-file- 267s basename].[file- 267s type].[sample|control]?.[plus|minus].[wig|bedgraph]". 267s Default: tombo_results 267s --file-types {coverage,valid_coverage,fraction,dampened_fraction,signal,signal_sd,dwell,difference,statistic} [{coverage,valid_coverage,fraction,dampened_fraction,signal,signal_sd,dwell,difference,statistic} ...] 267s Data types of genome browser files to produce. 267s Produced coverage files are in bedGraph format, while 267s all other file types will be in wiggle format 267s (https://genome.ucsc.edu/goldenpath/help/wiggle.html). 267s Default: "coverage" 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 267s usage: tombo text_output signif_sequence_context --statistics-filename 267s STATISTICS_FILENAME 267s [--genome-fasta GENOME_FASTA] 267s [--fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...]] 267s [--num-regions NUM_REGIONS] 267s [--num-bases NUM_BASES] 267s [--sequences-filename SEQUENCES_FILENAME] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Required Argument: 267s --statistics-filename STATISTICS_FILENAME 267s File to save/load genomic base anchored statistics. 267s 267s Sequence Arguments (Provide either FAST5s dir or genome FASTA): 267s --genome-fasta GENOME_FASTA 267s FASTA file used to re-squiggle. For faster sequence 267s access. 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s 267s Region Selection Arguments: 267s --num-regions NUM_REGIONS 267s Number of regions to plot. Default: 100 267s --num-bases NUM_BASES 267s Number of bases to plot/output. Default: 15 267s 267s Output Arguments: 267s --sequences-filename SEQUENCES_FILENAME 267s File for sequences from selected regions. Sequences 267s will be stored in FASTA format. Default: 267s tombo_results.significant_regions.fasta. 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 267s usage: tombo plot max_coverage --fast5-basedirs FAST5_BASEDIRS 267s [FAST5_BASEDIRS ...] 267s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 267s [--plot-standard-model] 267s [--plot-alternate-model {6mA,dam,5mC,dcm,CpG}] 267s [--overplot-threshold OVERPLOT_THRESHOLD] 267s [--overplot-type {Downsample,Boxplot,Quantile,Density}] 267s [--num-regions NUM_REGIONS] 267s [--num-bases NUM_BASES] 267s [--pdf-filename PDF_FILENAME] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Required Argument: 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s 267s Comparison Arguments: 267s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 267s Set of directories containing fast5 files for control 267s reads, containing only canonical nucleotides. 267s --plot-standard-model 267s Add default standard model distribution to the plot. 267s --plot-alternate-model {6mA,dam,5mC,dcm,CpG} 267s Add alternative model distribution to the plot. 267s 267s Overplotting Arguments: 267s --overplot-threshold OVERPLOT_THRESHOLD 267s Coverage level to trigger alternative plot type 267s instead of raw signal. Default: 50 267s --overplot-type {Downsample,Boxplot,Quantile,Density} 267s Plot type for regions with higher coverage. Default: 267s Downsample 267s 267s Plotting Region Arguments: 267s --num-regions NUM_REGIONS 267s Number of regions to plot. Default: 10 267s --num-bases NUM_BASES 267s Number of bases to plot/output. Default: 21 267s 267s Output Argument: 267s --pdf-filename PDF_FILENAME 267s PDF filename to store plot(s). Default: 267s tombo_results.max_coverage.pdf 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 267s usage: tombo plot genome_locations --fast5-basedirs FAST5_BASEDIRS 267s [FAST5_BASEDIRS ...] --genome-locations 267s GENOME_LOCATIONS [GENOME_LOCATIONS ...] 267s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 267s [--plot-standard-model] 267s [--plot-alternate-model {CpG,5mC,6mA,dam,dcm}] 267s [--overplot-threshold OVERPLOT_THRESHOLD] 267s [--overplot-type {Downsample,Boxplot,Quantile,Density}] 267s [--num-bases NUM_BASES] 267s [--pdf-filename PDF_FILENAME] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Required Arguments: 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s --genome-locations GENOME_LOCATIONS [GENOME_LOCATIONS ...] 267s Genomic locations at which to plot signal. Format 267s locations as "chrm:position[:strand] 267s [chrm2:position2[:strand2] ...]" (strand not 267s applicable for all applications) 267s 267s Comparison Arguments: 267s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 267s Set of directories containing fast5 files for control 267s reads, containing only canonical nucleotides. 267s --plot-standard-model 267s Add default standard model distribution to the plot. 267s --plot-alternate-model {CpG,5mC,6mA,dam,dcm} 267s Add alternative model distribution to the plot. 267s 267s Overplotting Arguments: 267s --overplot-threshold OVERPLOT_THRESHOLD 267s Coverage level to trigger alternative plot type 267s instead of raw signal. Default: 50 267s --overplot-type {Downsample,Boxplot,Quantile,Density} 267s Plot type for regions with higher coverage. Default: 267s Downsample 267s 267s Plotting Region Argument: 267s --num-bases NUM_BASES 267s Number of bases to plot/output. Default: 21 267s 267s Output Argument: 267s --pdf-filename PDF_FILENAME 267s PDF filename to store plot(s). Default: 267s tombo_results.genome_locations.pdf 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 267s usage: tombo plot motif_centered --fast5-basedirs FAST5_BASEDIRS 267s [FAST5_BASEDIRS ...] --motif MOTIF 267s --genome-fasta GENOME_FASTA 267s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 267s [--plot-standard-model] 267s [--plot-alternate-model {dcm,5mC,CpG,dam,6mA}] 267s [--overplot-threshold OVERPLOT_THRESHOLD] 267s [--overplot-type {Downsample,Boxplot,Quantile,Density}] 267s [--num-regions NUM_REGIONS] 267s [--num-bases NUM_BASES] [--deepest-coverage] 267s [--pdf-filename PDF_FILENAME] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Required Arguments: 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s --motif MOTIF Motif of interest at which to plot signal and 267s statsitics. Supports IUPAC single letter codes (use T 267s for RNA). 267s --genome-fasta GENOME_FASTA 267s FASTA file used to re-squiggle. For faster sequence 267s access. 267s 267s Comparison Arguments: 267s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 267s Set of directories containing fast5 files for control 267s reads, containing only canonical nucleotides. 267s --plot-standard-model 267s Add default standard model distribution to the plot. 267s --plot-alternate-model {dcm,5mC,CpG,dam,6mA} 267s Add alternative model distribution to the plot. 267s 267s Overplotting Arguments: 267s --overplot-threshold OVERPLOT_THRESHOLD 267s Coverage level to trigger alternative plot type 267s instead of raw signal. Default: 50 267s --overplot-type {Downsample,Boxplot,Quantile,Density} 267s Plot type for regions with higher coverage. Default: 267s Downsample 267s 267s Plotting Region Arguments: 267s --num-regions NUM_REGIONS 267s Number of regions to plot. Default: 10 267s --num-bases NUM_BASES 267s Number of bases to plot/output. Default: 21 267s --deepest-coverage Plot the deepest coverage regions. 267s 267s Output Argument: 267s --pdf-filename PDF_FILENAME 267s PDF filename to store plot(s). Default: 267s tombo_results.motif_centered.pdf 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 267s usage: tombo plot max_difference --fast5-basedirs FAST5_BASEDIRS 267s [FAST5_BASEDIRS ...] --control-fast5-basedirs 267s CONTROL_FAST5_BASEDIRS 267s [CONTROL_FAST5_BASEDIRS ...] 267s [--overplot-threshold OVERPLOT_THRESHOLD] 267s [--overplot-type {Downsample,Boxplot,Quantile,Density}] 267s [--num-regions NUM_REGIONS] 267s [--num-bases NUM_BASES] 267s [--pdf-filename PDF_FILENAME] 267s [--sequences-filename SEQUENCES_FILENAME] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Required Arguments: 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 267s Set of directories containing fast5 files for control 267s reads, containing only canonical nucleotides. 267s 267s Overplotting Arguments: 267s --overplot-threshold OVERPLOT_THRESHOLD 267s Coverage level to trigger alternative plot type 267s instead of raw signal. Default: 50 267s --overplot-type {Downsample,Boxplot,Quantile,Density} 267s Plot type for regions with higher coverage. Default: 267s Downsample 267s 267s Plotting Region Arguments: 267s --num-regions NUM_REGIONS 267s Number of regions to plot. Default: 10 267s --num-bases NUM_BASES 267s Number of bases to plot/output. Default: 21 267s 267s Output Arguments: 267s --pdf-filename PDF_FILENAME 267s PDF filename to store plot(s). Default: 267s tombo_results.max_difference.pdf 267s --sequences-filename SEQUENCES_FILENAME 267s File for sequences from selected regions. Sequences 267s will be stored in FASTA format. Default: None. 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 267s usage: tombo plot most_significant --fast5-basedirs FAST5_BASEDIRS 267s [FAST5_BASEDIRS ...] --statistics-filename 267s STATISTICS_FILENAME 267s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 267s [--plot-standard-model] 267s [--plot-alternate-model {5mC,CpG,dam,6mA,dcm}] 267s [--overplot-threshold OVERPLOT_THRESHOLD] 267s [--overplot-type {Downsample,Boxplot,Quantile,Density}] 267s [--num-regions NUM_REGIONS] 267s [--num-bases NUM_BASES] 267s [--coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS] 267s [--pdf-filename PDF_FILENAME] 267s [--sequences-filename SEQUENCES_FILENAME] 267s [--corrected-group CORRECTED_GROUP] 267s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 267s [--quiet] [--help] 267s 267s Required Arguments: 267s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 267s Directories containing fast5 files. 267s --statistics-filename STATISTICS_FILENAME 267s File to save/load genomic base anchored statistics. 267s 267s Comparison Arguments: 267s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 267s Set of directories containing fast5 files for control 267s reads, containing only canonical nucleotides. 267s --plot-standard-model 267s Add default standard model distribution to the plot. 267s --plot-alternate-model {5mC,CpG,dam,6mA,dcm} 267s Add alternative model distribution to the plot. 267s 267s Overplotting Arguments: 267s --overplot-threshold OVERPLOT_THRESHOLD 267s Coverage level to trigger alternative plot type 267s instead of raw signal. Default: 50 267s --overplot-type {Downsample,Boxplot,Quantile,Density} 267s Plot type for regions with higher coverage. Default: 267s Downsample 267s 267s Plotting Region Arguments: 267s --num-regions NUM_REGIONS 267s Number of regions to plot. Default: 10 267s --num-bases NUM_BASES 267s Number of bases to plot/output. Default: 21 267s 267s Statistical Argument: 267s --coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS 267s Dampen fraction modified estimates for low coverage 267s sites. Two parameters are unmodified and modified 267s pseudo read counts. This is equivalent to a beta prior 267s on the fraction estimate. Set to "0 0" to disable 267s dampened fraction estimation. Default: [2, 0] 267s 267s Output Arguments: 267s --pdf-filename PDF_FILENAME 267s PDF filename to store plot(s). Default: 267s tombo_results.significant_difference.pdf 267s --sequences-filename SEQUENCES_FILENAME 267s File for sequences from selected regions. Sequences 267s will be stored in FASTA format. Default: None. 267s 267s FAST5 Data Arguments: 267s --corrected-group CORRECTED_GROUP 267s FAST5 group created by resquiggle command. Default: 267s RawGenomeCorrected_000 267s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 267s FAST5 subgroup(s) (under /Analyses/[--basecall- 267s group]/) containing basecalls and created within 267s [--corrected-group] containing re-squiggle results. 267s Default: ['BaseCalled_template'] 267s 267s Miscellaneous Arguments: 267s --quiet, -q Don't print status information. 267s --help, -h Print this help message and exit 268s usage: tombo plot motif_with_stats --fast5-basedirs FAST5_BASEDIRS 268s [FAST5_BASEDIRS ...] --motif MOTIF 268s --statistics-filename STATISTICS_FILENAME 268s --genome-fasta GENOME_FASTA 268s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 268s [--plot-standard-model] 268s [--plot-alternate-model {5mC,dcm,dam,CpG,6mA}] 268s [--overplot-threshold OVERPLOT_THRESHOLD] 268s [--num-regions NUM_REGIONS] 268s [--num-context NUM_CONTEXT] 268s [--num-statistics NUM_STATISTICS] 268s [--coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS] 268s [--pdf-filename PDF_FILENAME] 268s [--corrected-group CORRECTED_GROUP] 268s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 268s [--quiet] [--help] 268s 268s Required Arguments: 268s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 268s Directories containing fast5 files. 268s --motif MOTIF Motif of interest at which to plot signal and 268s statsitics. Supports IUPAC single letter codes (use T 268s for RNA). 268s --statistics-filename STATISTICS_FILENAME 268s File to save/load genomic base anchored statistics. 268s --genome-fasta GENOME_FASTA 268s FASTA file used to re-squiggle. For faster sequence 268s access. 268s 268s Comparison Arguments: 268s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 268s Set of directories containing fast5 files for control 268s reads, containing only canonical nucleotides. 268s --plot-standard-model 268s Add default standard model distribution to the plot. 268s --plot-alternate-model {5mC,dcm,dam,CpG,6mA} 268s Add alternative model distribution to the plot. 268s 268s Overplotting Argument: 268s --overplot-threshold OVERPLOT_THRESHOLD 268s Coverage level to trigger alternative plot type 268s instead of raw signal. Default: 50 268s 268s Plotting Region Arguments: 268s --num-regions NUM_REGIONS 268s Number of regions to plot. Default: 3 268s --num-context NUM_CONTEXT 268s Number of context bases around motif. Default: 5 268s --num-statistics NUM_STATISTICS 268s Number of motif centered regions to include in 268s statistic distributions. Default: 200 268s 268s Statistical Argument: 268s --coverage-dampen-counts COVERAGE_DAMPEN_COUNTS COVERAGE_DAMPEN_COUNTS 268s Dampen fraction modified estimates for low coverage 268s sites. Two parameters are unmodified and modified 268s pseudo read counts. This is equivalent to a beta prior 268s on the fraction estimate. Set to "0 0" to disable 268s dampened fraction estimation. Default: [2, 0] 268s 268s Output Argument: 268s --pdf-filename PDF_FILENAME 268s PDF filename to store plot(s). Default: 268s tombo_results.motif_statistics.pdf 268s 268s FAST5 Data Arguments: 268s --corrected-group CORRECTED_GROUP 268s FAST5 group created by resquiggle command. Default: 268s RawGenomeCorrected_000 268s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 268s FAST5 subgroup(s) (under /Analyses/[--basecall- 268s group]/) containing basecalls and created within 268s [--corrected-group] containing re-squiggle results. 268s Default: ['BaseCalled_template'] 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 268s usage: tombo plot per_read --genome-locations GENOME_LOCATIONS 268s [GENOME_LOCATIONS ...] 268s --per-read-statistics-filename 268s PER_READ_STATISTICS_FILENAME 268s [--genome-fasta GENOME_FASTA] 268s [--fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...]] 268s [--num-reads NUM_READS] [--num-bases NUM_BASES] 268s [--box-center] [--pdf-filename PDF_FILENAME] 268s [--corrected-group CORRECTED_GROUP] 268s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 268s [--quiet] [--help] 268s 268s Required Arguments: 268s --genome-locations GENOME_LOCATIONS [GENOME_LOCATIONS ...] 268s Genomic locations at which to plot signal. Format 268s locations as "chrm:position[:strand] 268s [chrm2:position2[:strand2] ...]" (strand not 268s applicable for all applications) 268s --per-read-statistics-filename PER_READ_STATISTICS_FILENAME 268s Binary file containing per-read statistics from 268s statistical testing. 268s 268s Sequence Arguments (Provide either FAST5s dir or genome FASTA): 268s --genome-fasta GENOME_FASTA 268s FASTA file used to re-squiggle. For faster sequence 268s access. 268s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 268s Directories containing fast5 files. 268s 268s Plotting Region Arguments: 268s --num-reads NUM_READS 268s Number of reads to plot. Default: 100 268s --num-bases NUM_BASES 268s Number of bases to plot/output. Default: 51 268s --box-center Plot a box around the central base. 268s 268s Output Argument: 268s --pdf-filename PDF_FILENAME 268s PDF filename to store plot(s). Default: 268s tombo_results.per_read_stats.pdf 268s 268s FAST5 Data Arguments: 268s --corrected-group CORRECTED_GROUP 268s FAST5 group created by resquiggle command. Default: 268s RawGenomeCorrected_000 268s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 268s FAST5 subgroup(s) (under /Analyses/[--basecall- 268s group]/) containing basecalls and created within 268s [--corrected-group] containing re-squiggle results. 268s Default: ['BaseCalled_template'] 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 268s usage: tombo plot roc --statistics-filenames STATISTICS_FILENAMES 268s [STATISTICS_FILENAMES ...] 268s [--modified-locations MODIFIED_LOCATIONS [MODIFIED_LOCATIONS ...]] 268s [--unmodified-locations UNMODIFIED_LOCATIONS [UNMODIFIED_LOCATIONS ...]] 268s [--motif-descriptions MOTIF_DESCRIPTIONS [MOTIF_DESCRIPTIONS ...]] 268s [--genome-fasta GENOME_FASTA] 268s [--pdf-filename PDF_FILENAME] 268s [--statistics-per-block STATISTICS_PER_BLOCK] 268s [--total-statistics-limit TOTAL_STATISTICS_LIMIT] 268s [--quiet] [--help] 268s 268s Required Argument: 268s --statistics-filenames STATISTICS_FILENAMES [STATISTICS_FILENAMES ...] 268s Files to load genomic base anchored statistics. 268s 268s Ground Truth Arguments (provide bed files or motifs): 268s --modified-locations MODIFIED_LOCATIONS [MODIFIED_LOCATIONS ...] 268s Modification description and bed format files 268s containing single base locations of ground truth 268s modified sites. Bed files should contain 6 fields 268s including strand. Format descriptions as 268s "mod_name:locs.bed". Example: "CpG 268s bisulfite":bisulfite_locs.bed 268s --unmodified-locations UNMODIFIED_LOCATIONS [UNMODIFIED_LOCATIONS ...] 268s Bed format files containing single base locations of 268s ground truth unmodified sites. Bed files should 268s contain 6 fields including strand. 268s --motif-descriptions MOTIF_DESCRIPTIONS [MOTIF_DESCRIPTIONS ...] 268s Ground truth, motif centered, modified base 268s descriptions for computing ROC and PR curves. Each 268s statistics file is associated with a set of motif 268s descriptions. Format descriptions as: 268s "motif:mod_pos:name[::motif2:mod_pos2:name2...]". 268s mod_pos indicates the alternate-base within the motif 268s (1-based index). Example: CCWGG:2:"dcm 268s 5mC"::GATC:2:"dam 6mA" would assess the performance of 268s a single Tombo statistics file for identification of 268s E. coli dam and dcm methylation. 268s --genome-fasta GENOME_FASTA 268s FASTA file used to re-squiggle. For faster sequence 268s access. 268s 268s Output Arguments: 268s --pdf-filename PDF_FILENAME 268s PDF filename to store plot(s). Default: 268s tombo_results.roc.pdf 268s 268s Down-sampling Arguments: 268s --statistics-per-block STATISTICS_PER_BLOCK 268s Number of randomly selected per-read, per-base 268s statistics to extract from each genomic block for 268s plotting. Default: Include all stats 268s --total-statistics-limit TOTAL_STATISTICS_LIMIT 268s Total per-read statistics to be extracted for 268s plotting. Avoids memory overflow for large runs. 268s Default: 5000000 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 268s usage: tombo plot per_read_roc --per-read-statistics-filenames 268s PER_READ_STATISTICS_FILENAMES 268s [PER_READ_STATISTICS_FILENAMES ...] 268s [--modified-locations MODIFIED_LOCATIONS [MODIFIED_LOCATIONS ...]] 268s [--unmodified-locations UNMODIFIED_LOCATIONS [UNMODIFIED_LOCATIONS ...]] 268s [--motif-descriptions MOTIF_DESCRIPTIONS [MOTIF_DESCRIPTIONS ...]] 268s [--genome-fasta GENOME_FASTA] 268s [--statistics-per-block STATISTICS_PER_BLOCK] 268s [--total-statistics-limit TOTAL_STATISTICS_LIMIT] 268s [--pdf-filename PDF_FILENAME] [--quiet] 268s [--help] 268s 268s Required Argument: 268s --per-read-statistics-filenames PER_READ_STATISTICS_FILENAMES [PER_READ_STATISTICS_FILENAMES ...] 268s Binary files containing per-read statistics from 268s statistical testing. 268s 268s Ground Truth Arguments (provide bed files or motifs): 268s --modified-locations MODIFIED_LOCATIONS [MODIFIED_LOCATIONS ...] 268s Modification description and bed format files 268s containing single base locations of ground truth 268s modified sites. Bed files should contain 6 fields 268s including strand. Format descriptions as 268s "mod_name:locs.bed". Example: "CpG 268s bisulfite":bisulfite_locs.bed 268s --unmodified-locations UNMODIFIED_LOCATIONS [UNMODIFIED_LOCATIONS ...] 268s Bed format files containing single base locations of 268s ground truth unmodified sites. Bed files should 268s contain 6 fields including strand. 268s --motif-descriptions MOTIF_DESCRIPTIONS [MOTIF_DESCRIPTIONS ...] 268s Ground truth, motif centered, modified base 268s descriptions for computing ROC and PR curves. Each 268s statistics file is associated with a set of motif 268s descriptions. Format descriptions as: 268s "motif:mod_pos:name[::motif2:mod_pos2:name2...]". 268s mod_pos indicates the alternate-base within the motif 268s (1-based index). Example: CCWGG:2:"dcm 268s 5mC"::GATC:2:"dam 6mA" would assess the performance of 268s a single Tombo statistics file for identification of 268s E. coli dam and dcm methylation. 268s --genome-fasta GENOME_FASTA 268s FASTA file used to re-squiggle. For faster sequence 268s access. 268s 268s Down-sampling Arguments: 268s --statistics-per-block STATISTICS_PER_BLOCK 268s Number of randomly selected per-read, per-base 268s statistics to extract from each genomic block for 268s plotting. Default: 100000 268s --total-statistics-limit TOTAL_STATISTICS_LIMIT 268s Total per-read statistics to be extracted for 268s plotting. Avoids memory overflow for large runs. 268s Default: 5000000 268s 268s Output Arguments: 268s --pdf-filename PDF_FILENAME 268s PDF filename to store plot(s). Default: 268s tombo_results.per_reads_roc.pdf 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 268s usage: tombo plot kmer --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 268s [--upstream-bases {0,1,2,3,4}] 268s [--downstream-bases {0,1,2,3,4}] [--read-mean] 268s [--num-kmer-threshold NUM_KMER_THRESHOLD] 268s [--num-reads NUM_READS] [--pdf-filename PDF_FILENAME] 268s [--r-data-filename R_DATA_FILENAME] [--dont-plot] 268s [--corrected-group CORRECTED_GROUP] 268s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 268s [--quiet] [--help] 268s 268s Required Argument: 268s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 268s Directories containing fast5 files. 268s 268s Data Processing Arguments: 268s --upstream-bases {0,1,2,3,4} 268s Upstream bases in k-mer. Default: 1 268s --downstream-bases {0,1,2,3,4} 268s Downstream bases in k-mer. Default: 2 268s --read-mean Plot k-mer means across whole reads as opposed to 268s individual k-mer event levels. 268s --num-kmer-threshold NUM_KMER_THRESHOLD 268s Observations of each k-mer required to include a read 268s in read level averages. Default: 1 268s 268s Plotting Region Arguments: 268s --num-reads NUM_READS 268s Number of reads to plot. Default: 100 268s 268s Output Arguments: 268s --pdf-filename PDF_FILENAME 268s PDF filename to store plot(s). Default: 268s tombo_results.kmer_distribution.pdf 268s --r-data-filename R_DATA_FILENAME 268s Filename to save R data structure. Default: Don't save 268s --dont-plot Don't plot result. Useful to produce only R data file. 268s 268s FAST5 Data Arguments: 268s --corrected-group CORRECTED_GROUP 268s FAST5 group created by resquiggle command. Default: 268s RawGenomeCorrected_000 268s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 268s FAST5 subgroup(s) (under /Analyses/[--basecall- 268s group]/) containing basecalls and created within 268s [--corrected-group] containing re-squiggle results. 268s Default: ['BaseCalled_template'] 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 268s usage: tombo plot cluster_most_significant --fast5-basedirs FAST5_BASEDIRS 268s [FAST5_BASEDIRS ...] 268s --control-fast5-basedirs 268s CONTROL_FAST5_BASEDIRS 268s [CONTROL_FAST5_BASEDIRS ...] 268s --statistics-filename 268s STATISTICS_FILENAME 268s [--genome-fasta GENOME_FASTA] 268s [--processes PROCESSES] 268s [--num-regions NUM_REGIONS] 268s [--num-bases NUM_BASES] 268s [--slide-span SLIDE_SPAN] 268s [--pdf-filename PDF_FILENAME] 268s [--r-data-filename R_DATA_FILENAME] 268s [--corrected-group CORRECTED_GROUP] 268s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 268s [--quiet] [--help] 268s 268s Required Arguments: 268s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 268s Directories containing fast5 files. 268s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 268s Set of directories containing fast5 files for control 268s reads, containing only canonical nucleotides. 268s --statistics-filename STATISTICS_FILENAME 268s File to save/load genomic base anchored statistics. 268s 268s FASTA Sequence Argument: 268s --genome-fasta GENOME_FASTA 268s FASTA file used to re-squiggle. For faster sequence 268s access. 268s 268s Multiprocessing Argument: 268s --processes PROCESSES 268s Number of processes. Default: 1 268s 268s Plotting Region Arguments: 268s --num-regions NUM_REGIONS 268s Number of regions to plot. Default: 10 268s --num-bases NUM_BASES 268s Number of bases to plot/output. Default: 21 268s --slide-span SLIDE_SPAN 268s Number of bases offset over which to search when 268s computing distances for signal cluster plotting. 268s Default: 0 (exact position) 268s 268s Output Arguments: 268s --pdf-filename PDF_FILENAME 268s PDF filename to store plot(s). Default: 268s tombo_results.signal_clusters.pdf 268s --r-data-filename R_DATA_FILENAME 268s Filename to save R data structure. Default: Don't save 268s 268s FAST5 Data Arguments: 268s --corrected-group CORRECTED_GROUP 268s FAST5 group created by resquiggle command. Default: 268s RawGenomeCorrected_000 268s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 268s FAST5 subgroup(s) (under /Analyses/[--basecall- 268s group]/) containing basecalls and created within 268s [--corrected-group] containing re-squiggle results. 268s Default: ['BaseCalled_template'] 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 268s usage: tombo build_model estimate_scale [--quiet] [--help] fast5s_basedir 268s 268s Required Arguments: 268s fast5s_basedir Directory containing fast5 files. All files ending in 268s "fast5" found recursively within this base directory will be 268s processed. 268s 268s Miscellaneous Arguments: 268s --quiet, -q Don't print status information. 268s --help, -h Print this help message and exit 269s usage: tombo build_model event_resquiggle 269s [--minimap2-executable MINIMAP2_EXECUTABLE] 269s [--minimap2-index MINIMAP2_INDEX] 269s [--bwa-mem-executable BWA_MEM_EXECUTABLE] 269s [--graphmap-executable GRAPHMAP_EXECUTABLE] 269s [--alignment-batch-size ALIGNMENT_BATCH_SIZE] 269s [--normalization-type {median,pA,pA_raw,none}] 269s [--pore-model-filename PORE_MODEL_FILENAME] 269s [--outlier-threshold OUTLIER_THRESHOLD] 269s [--segmentation-parameters SEGMENTATION_PARAMETERS SEGMENTATION_PARAMETERS] 269s [--obs-per-base-filter OBS_PER_BASE_FILTER [OBS_PER_BASE_FILTER ...]] 269s [--timeout TIMEOUT] 269s [--cpts-limit CPTS_LIMIT] 269s [--skip-index] [--overwrite] 269s [--failed-reads-filename FAILED_READS_FILENAME] 269s [--include-event-stdev] 269s [--corrected-group CORRECTED_GROUP] 269s [--basecall-group BASECALL_GROUP] 269s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 269s [--processes PROCESSES] 269s [--align-processes ALIGN_PROCESSES] 269s [--align-threads-per-process ALIGN_THREADS_PER_PROCESS] 269s [--resquiggle-processes RESQUIGGLE_PROCESSES] 269s [--quiet] [--help] 269s fast5s_basedir reference_fasta 269s 269s Required Arguments: 269s fast5s_basedir Directory containing fast5 files. All files ending in 269s "fast5" found recursively within this base directory 269s will be processed. 269s reference_fasta Reference genome/transcriptome FASTA file for mapping. 269s 269s Mapper Arguments (One mapper is required): 269s --minimap2-executable MINIMAP2_EXECUTABLE 269s Path to minimap2 executable. 269s --minimap2-index MINIMAP2_INDEX 269s Path to minimap2 index (with map-ont preset) file 269s corresponding to the [genome_fasta] provided. 269s --bwa-mem-executable BWA_MEM_EXECUTABLE 269s Path to bwa-mem executable. 269s --graphmap-executable GRAPHMAP_EXECUTABLE 269s Path to graphmap executable. 269s --alignment-batch-size ALIGNMENT_BATCH_SIZE 269s Number of reads included in each alignment call. Note: 269s A new system mapping call is made for each batch 269s (including loading of the genome), so it is advised to 269s use larger values for larger genomes. Default: 1000 269s 269s Signal Processing Arguments: 269s --normalization-type {median,pA,pA_raw,none} 269s Choices: "none": raw 16-bit DAQ values, "pA_raw": pA 269s as in the ONT events (using offset, range and 269s digitization), "pA": k-mer-based correction for pA 269s drift as in nanopolish (requires [--pore-model- 269s filename]), "median": median and MAD from raw signal. 269s Default: median 269s --pore-model-filename PORE_MODEL_FILENAME 269s File containing kmer model parameters (level_mean and 269s level_stdv) used in order to compute kmer-based 269s corrected pA values. E.g. https://github.com/jts/nanop 269s olish/blob/master/etc/r9- 269s models/template_median68pA.5mers.model 269s --outlier-threshold OUTLIER_THRESHOLD 269s Windosrize the signal at this number of scale values. 269s Negative value disables outlier clipping. Default: 269s 5.000000 269s --segmentation-parameters SEGMENTATION_PARAMETERS SEGMENTATION_PARAMETERS 269s Specify the 2 parameters for segmentation 1) running 269s neighboring windows width 2) minimum raw observations 269s per genomic base. Sample type defaults: RNA : 12 6 || 269s DNA : 5 3 269s 269s Read Filtering Arguments: 269s --obs-per-base-filter OBS_PER_BASE_FILTER [OBS_PER_BASE_FILTER ...] 269s Filter reads based on observations per base percentile 269s thresholds. Format thresholds as "percentile:thresh 269s [pctl2:thresh2 ...]". For example to filter reads with 269s 99th pctl > 200 obs/base or max > 5k obs/base use 269s "99:200 100:5000". 269s --timeout TIMEOUT Timeout in seconds for processing a single read. 269s Default: No timeout. 269s --cpts-limit CPTS_LIMIT 269s Maximum number of changepoints to find within a single 269s indel group. Default: No limit. 269s 269s Input/Output Arguments: 269s --skip-index Skip creation of tombo index. This drastically slows 269s downstream tombo commands. Default stores tombo index 269s named ".[--fast5-basedir].[--corrected- 269s group].tombo.index" to be loaded automatically for 269s downstream commands. 269s --overwrite Overwrite previous corrected group in FAST5 files. 269s Note: only effects --corrected-group or --new- 269s corrected-group. 269s --failed-reads-filename FAILED_READS_FILENAME 269s Output failed read filenames with assoicated error. 269s Default: Do not store failed reads. 269s --include-event-stdev 269s Include corrected event standard deviation in output 269s FAST5 data. 269s 269s FAST5 Data Arguments: 269s --corrected-group CORRECTED_GROUP 269s FAST5 group created by resquiggle command. Default: 269s RawGenomeCorrected_000 269s --basecall-group BASECALL_GROUP 269s FAST5 group obtain original basecalls (under Analyses 269s group). Default: Basecall_1D_000 269s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 269s FAST5 subgroup(s) (under /Analyses/[--basecall- 269s group]/) containing basecalls and created within 269s [--corrected-group] containing re-squiggle results. 269s Default: ['BaseCalled_template'] 269s 269s Multiprocessing Arguments: 269s --processes PROCESSES 269s Number of processes. Default: 2 269s --align-processes ALIGN_PROCESSES 269s Number of processes to use for parsing and aligning 269s original basecalls. Each process will independently 269s load the genome into memory, so use caution with 269s larger genomes (e.g. human). Default: 1 269s --align-threads-per-process ALIGN_THREADS_PER_PROCESS 269s Number of threads to use for aligner system call. 269s Default: [--processes] / (2 * [--align-processes)] 269s --resquiggle-processes RESQUIGGLE_PROCESSES 269s Number of processes to use for resquiggle algorithm. 269s Default: [--processes] / 2 269s 269s Miscellaneous Arguments: 269s --quiet, -q Don't print status information. 269s --help, -h Print this help message and exit 269s usage: tombo build_model estimate_reference --fast5-basedirs FAST5_BASEDIRS 269s [FAST5_BASEDIRS ...] 269s --tombo-model-filename 269s TOMBO_MODEL_FILENAME 269s [--estimate-mean] 269s [--kmer-specific-sd] 269s [--upstream-bases {0,1,2,3,4}] 269s [--downstream-bases {0,1,2,3,4}] 269s [--minimum-test-reads MINIMUM_TEST_READS] 269s [--coverage-threshold COVERAGE_THRESHOLD] 269s [--minimum-kmer-observations MINIMUM_KMER_OBSERVATIONS] 269s [--multiprocess-region-size MULTIPROCESS_REGION_SIZE] 269s [--processes PROCESSES] 269s [--corrected-group CORRECTED_GROUP] 269s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 269s [--quiet] [--help] 269s 269s Required Arguments: 269s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 269s Directories containing fast5 files. 269s --tombo-model-filename TOMBO_MODEL_FILENAME 269s Filename to save Tombo model. 269s 269s Modeling Arguments: 269s --estimate-mean Use the mean instead of median for model level 269s estimation. Note: This can cause poor fits due to 269s outliers 269s --kmer-specific-sd Estimate standard deviation for each k-mers 269s individually. 269s --upstream-bases {0,1,2,3,4} 269s Upstream bases in k-mer. Default: 1 269s --downstream-bases {0,1,2,3,4} 269s Downstream bases in k-mer. Default: 2 269s 269s Filtering Arguments: 269s --minimum-test-reads MINIMUM_TEST_READS 269s Number of reads required at a position to perform 269s significance testing or contribute to model 269s estimation. Default: 10 269s --coverage-threshold COVERAGE_THRESHOLD 269s Maximum mean coverage per region when estimating k-mer 269s model (limits compute time for deep samples). Default: 269s 100 269s --minimum-kmer-observations MINIMUM_KMER_OBSERVATIONS 269s Number of each k-mer observations required in order to 269s produce a reference (genomic locations for standard 269s reference and per-read for alternative reference). 269s Default: 5 269s 269s Multiprocessing Arguments: 269s --multiprocess-region-size MULTIPROCESS_REGION_SIZE 269s Size of regions over which to multiprocesses statistic 269s computation. For very deep samples a smaller value is 269s recommmended in order to control memory consumption. 269s Default: 10000 269s --processes PROCESSES 269s Number of processes. Default: 1 269s 269s FAST5 Data Arguments: 269s --corrected-group CORRECTED_GROUP 269s FAST5 group created by resquiggle command. Default: 269s RawGenomeCorrected_000 269s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 269s FAST5 subgroup(s) (under /Analyses/[--basecall- 269s group]/) containing basecalls and created within 269s [--corrected-group] containing re-squiggle results. 269s Default: ['BaseCalled_template'] 269s 269s Miscellaneous Arguments: 269s --quiet, -q Don't print status information. 269s --help, -h Print this help message and exit 269s usage: tombo build_model estimate_alt_reference --alternate-model-filename 269s ALTERNATE_MODEL_FILENAME 269s --alternate-model-name 269s ALTERNATE_MODEL_NAME 269s --alternate-model-base 269s {A,C,G,T} 269s [--fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...]] 269s [--control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...]] 269s [--alternate-density-filename ALTERNATE_DENSITY_FILENAME] 269s [--control-density-filename CONTROL_DENSITY_FILENAME] 269s [--dna] [--rna] 269s [--tombo-model-filename TOMBO_MODEL_FILENAME] 269s [--alt-fraction-percentile ALT_FRACTION_PERCENTILE] 269s [--kernel-density-bandwidth KERNEL_DENSITY_BANDWIDTH] 269s [--minimum-kmer-observations MINIMUM_KMER_OBSERVATIONS] 269s [--save-density-basename SAVE_DENSITY_BASENAME] 269s [--processes PROCESSES] 269s [--corrected-group CORRECTED_GROUP] 269s [--basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...]] 269s [--quiet] [--help] 269s 269s Required Arguments: 269s --alternate-model-filename ALTERNATE_MODEL_FILENAME 269s Tombo model for alternative likelihood ratio 269s significance testing. 269s --alternate-model-name ALTERNATE_MODEL_NAME 269s A short name to associate with this alternate model 269s (e.g. 5mC, 6mA, etc.). This text will be included in 269s output filenames when this model is used for testing. 269s --alternate-model-base {A,C,G,T} 269s Non-standard base is an alternative to this base. 269s 269s Signal Data Arguments (Must provide either FAST5 dirs or previous density estimates): 269s --fast5-basedirs FAST5_BASEDIRS [FAST5_BASEDIRS ...] 269s Directories containing fast5 files. 269s --control-fast5-basedirs CONTROL_FAST5_BASEDIRS [CONTROL_FAST5_BASEDIRS ...] 269s Set of directories containing fast5 files for control 269s reads, containing only canonical nucleotides. 269s --alternate-density-filename ALTERNATE_DENSITY_FILENAME 269s File containing k-mer level kernel density estimates 269s for the alternative sample saved using --save-density- 269s basename. 269s --control-density-filename CONTROL_DENSITY_FILENAME 269s File containing k-mer level kernel density estimates 269s for the control sample saved using --save-density- 269s basename. 269s 269s Standard Model Arguments: 269s --dna Explicitly select canonical DNA model. Default: 269s Automatically determine from FAST5s 269s --rna Explicitly select canonical RNA model. Default: 269s Automatically determine from FAST5s 269s --tombo-model-filename TOMBO_MODEL_FILENAME 269s Tombo model filename. If no file is provided, the 269s default DNA or RNA Tombo model will be used. 269s 269s Model Fitting Arguments: 269s --alt-fraction-percentile ALT_FRACTION_PERCENTILE 269s When esitmating the alternative base incorporation 269s rate, this percent of k-mers are assumed to have 269s significantly shifted signal so the alternative 269s distribution minimally overlaps the standard base 269s distribution. Default: 5.000000 269s --kernel-density-bandwidth KERNEL_DENSITY_BANDWIDTH 269s Bandwidth applied when performing Gaussian kernal 269s density esitmation on standard and alternative base 269s signal distributions. Default: 0.050000 269s 269s Filtering Argument: 269s --minimum-kmer-observations MINIMUM_KMER_OBSERVATIONS 269s Number of each k-mer observations required in order to 269s produce a reference (genomic locations for standard 269s reference and per-read for alternative reference). 269s Default: 1000 269s 269s Output Argument: 269s --save-density-basename SAVE_DENSITY_BASENAME 269s Basename to save alternative model estimation density 269s estimation information. See scripts/debug_est_alt.R 269s for info use example. Default: Don't save. 269s 269s Multiprocessing Arguments: 269s --processes PROCESSES 269s Number of processes. Default: 1 269s 269s FAST5 Data Arguments: 269s --corrected-group CORRECTED_GROUP 269s FAST5 group created by resquiggle command. Default: 269s RawGenomeCorrected_000 269s --basecall-subgroups BASECALL_SUBGROUPS [BASECALL_SUBGROUPS ...] 269s FAST5 subgroup(s) (under /Analyses/[--basecall- 269s group]/) containing basecalls and created within 269s [--corrected-group] containing re-squiggle results. 269s Default: ['BaseCalled_template'] 269s 269s Miscellaneous Arguments: 269s --quiet, -q Don't print status information. 269s --help, -h Print this help message and exit 269s This test only tests the help system 269s There is an extensive test in 269s 269s tombo/tests/shell_tests.sh 269s 269s but this requires to download larger data 269s sets which is not done for the moment. 269s autopkgtest [15:36:58]: test run-unit-test: -----------------------] 273s run-unit-test PASS 273s autopkgtest [15:37:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 276s autopkgtest [15:37:05]: @@@@@@@@@@@@@@@@@@@@ summary 276s run-unit-test PASS