0s autopkgtest [02:07:19]: starting date and time: 2024-03-23 02:07:19+0000
  0s autopkgtest [02:07:19]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [02:07:19]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ua6wfmow/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade r-cran-unitizer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- lxd -r lxd-armhf-10.145.243.179 lxd-armhf-10.145.243.179:autopkgtest/ubuntu/noble/armhf
 24s autopkgtest [02:07:43]: testbed dpkg architecture: armhf
 26s autopkgtest [02:07:45]: testbed apt version: 2.7.12
 26s autopkgtest [02:07:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 33s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 34s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4035 kB]
 34s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB]
 34s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
 34s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 34s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [637 kB]
 34s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B]
 34s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B]
 34s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B]
 34s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4061 kB]
 34s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B]
 34s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [49.1 kB]
 34s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B]
 37s Fetched 9471 kB in 2s (5487 kB/s)
 37s Reading package lists...
 46s tee: /proc/self/fd/2: Permission denied
 67s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
 67s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
 67s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
 67s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
 69s Reading package lists...
 69s Reading package lists...
 69s Building dependency tree...
 69s Reading state information...
 70s Calculating upgrade...
 70s The following packages were automatically installed and are no longer required:
 70s   linux-headers-6.8.0-11 python3-lib2to3
 70s Use 'apt autoremove' to remove them.
 70s The following packages will be REMOVED:
 70s   libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1
 70s   libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11
 70s   libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2
 70s   libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0
 70s   libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic python3-distutils
 70s The following NEW packages will be installed:
 70s   libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64
 70s   libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
 70s   libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64
 71s   libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64
 71s   libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64
 71s   libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20
 71s   linux-headers-6.8.0-20-generic xdg-user-dirs
 71s The following packages have been kept back:
 71s   multipath-tools
 71s The following packages will be upgraded:
 71s   apparmor apt apt-utils bind9-dnsutils bind9-host bind9-libs binutils
 71s   binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils bsdutils
 71s   btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon
 71s   dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base
 71s   dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp
 71s   fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0
 71s   gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv
 71s   groff-base ibverbs-providers inetutils-telnet info initramfs-tools
 71s   initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd
 71s   kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils
 71s   libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
 71s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
 71s   libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libc-bin libc6 libcap-ng0
 71s   libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3
 71s   libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7
 71s   libexpat1 libfdisk1 libfido2-1 libftdi1-2 libfwupd2 libgcc-s1
 71s   libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0
 71s   libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0
 71s   libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0
 71s   libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc
 71s   libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2
 71s   libnss-systemd libpam-modules libpam-modules-bin libpam-runtime
 71s   libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0
 71s   libpolkit-gobject-1-0 libprotobuf-c1 libpython3-stdlib libpython3.11-minimal
 71s   libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqmi-glib5
 71s   libqmi-proxy libqrtr-glib0 librtmp1 libsasl2-2 libsasl2-modules
 71s   libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2
 71s   libsframe1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssh-4 libstdc++6
 71s   libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl
 71s   libtirpc-common libudev1 libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1
 71s   libxml2 libxmlb2 libxmuu1 linux-headers-generic locales logsave lshw lsof
 71s   man-db mount mtr-tiny netplan-generator netplan.io openssh-client
 71s   openssh-server openssh-sftp-server openssl parted perl perl-base
 71s   perl-modules-5.38 pinentry-curses plymouth plymouth-theme-ubuntu-text psmisc
 71s   python-apt-common python3 python3-apt python3-cryptography python3-dbus
 71s   python3-gdbm python3-gi python3-lib2to3 python3-minimal python3-netplan
 71s   python3-pkg-resources python3-pyrsistent python3-setuptools
 71s   python3-typing-extensions python3-yaml python3.11 python3.11-minimal
 71s   python3.12 python3.12-minimal readline-common rsync shared-mime-info sudo
 71s   systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd tcpdump
 71s   telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 usb.ids
 71s   util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g
 71s 233 upgraded, 32 newly installed, 31 to remove and 1 not upgraded.
 71s Need to get 106 MB of archives.
 71s After this operation, 84.4 MB of additional disk space will be used.
 71s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB]
 71s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB]
 71s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB]
 71s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB]
 71s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.39-0ubuntu6 [2827 kB]
 71s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB]
 71s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-5.1ubuntu1 [119 kB]
 71s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-5.1ubuntu1 [321 kB]
 71s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-5.1ubuntu1 [31.4 kB]
 71s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-5.1ubuntu1 [78.6 kB]
 71s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
 71s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB]
 71s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB]
 71s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB]
 71s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB]
 71s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB]
 71s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB]
 71s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB]
 71s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB]
 71s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB]
 71s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB]
 71s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB]
 71s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B]
 71s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB]
 71s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB]
 71s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB]
 71s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB]
 72s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu7 [296 kB]
 72s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu7 [219 kB]
 72s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
 72s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB]
 72s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB]
 72s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu1 [137 kB]
 72s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB]
 72s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB]
 72s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB]
 72s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB]
 72s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB]
 72s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB]
 72s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB]
 72s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB]
 72s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB]
 72s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB]
 72s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB]
 72s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB]
 72s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B]
 72s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB]
 72s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB]
 72s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB]
 72s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB]
 72s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB]
 72s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB]
 72s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB]
 72s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB]
 72s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB]
 72s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB]
 72s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB]
 72s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B]
 72s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB]
 72s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB]
 72s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB]
 72s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB]
 72s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB]
 72s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB]
 72s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB]
 72s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB]
 72s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB]
 72s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB]
 72s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB]
 72s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB]
 72s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB]
 72s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB]
 72s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB]
 73s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB]
 73s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB]
 73s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB]
 73s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB]
 73s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB]
 73s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB]
 73s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB]
 73s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB]
 73s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB]
 73s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB]
 73s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB]
 73s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB]
 73s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB]
 73s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB]
 73s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB]
 73s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B]
 73s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
 73s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB]
 73s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu2 [17.1 kB]
 73s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB]
 73s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB]
 73s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B]
 73s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB]
 73s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB]
 73s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB]
 73s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB]
 73s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB]
 73s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB]
 73s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB]
 74s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB]
 74s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu7 [290 kB]
 74s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB]
 74s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB]
 74s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB]
 74s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB]
 74s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB]
 74s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB]
 74s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB]
 74s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB]
 74s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB]
 74s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB]
 74s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB]
 74s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B]
 74s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB]
 74s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB]
 74s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB]
 74s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB]
 74s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B]
 74s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB]
 74s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB]
 74s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB]
 74s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-1 [123 kB]
 74s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB]
 74s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-1 [4349 kB]
 74s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB]
 74s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB]
 74s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB]
 74s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.1 [19.4 kB]
 74s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.1 [216 kB]
 74s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB]
 74s Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B]
 74s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB]
 74s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB]
 74s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB]
 74s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB]
 74s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB]
 74s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB]
 74s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-3.1build1 [129 kB]
 74s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB]
 74s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB]
 74s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB]
 74s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB]
 74s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB]
 74s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.6build1 [162 kB]
 74s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB]
 74s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB]
 74s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.6build1 [19.8 kB]
 74s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
 74s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
 74s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB]
 74s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB]
 74s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB]
 74s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B]
 74s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB]
 74s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB]
 74s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB]
 75s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-3.1build1 [56.5 kB]
 75s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB]
 75s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB]
 75s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B]
 75s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
 75s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB]
 75s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB]
 75s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB]
 75s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB]
 75s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB]
 75s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB]
 75s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B]
 75s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB]
 75s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB]
 75s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB]
 75s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB]
 75s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B]
 75s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB]
 75s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB]
 75s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB]
 75s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB]
 75s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB]
 75s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB]
 75s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B]
 75s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB]
 75s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB]
 75s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB]
 75s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B]
 75s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB]
 75s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B]
 75s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB]
 75s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB]
 75s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB]
 75s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB]
 75s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB]
 75s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB]
 75s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB]
 75s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB]
 75s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB]
 75s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB]
 75s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB]
 75s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB]
 75s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.39-0ubuntu6 [530 kB]
 75s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB]
 75s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB]
 76s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB]
 76s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB]
 76s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB]
 76s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB]
 76s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB]
 76s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB]
 76s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB]
 76s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB]
 76s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB]
 76s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB]
 76s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB]
 76s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB]
 76s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-19ubuntu1 [47.7 kB]
 76s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB]
 76s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB]
 76s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB]
 76s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-5.1ubuntu1 [13.9 kB]
 76s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
 76s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB]
 76s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf locales all 2.39-0ubuntu6 [4232 kB]
 76s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu5 [665 kB]
 76s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu5 [385 kB]
 76s Get:227 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB]
 76s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu5 [62.4 kB]
 76s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB]
 76s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B]
 76s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB]
 76s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB]
 76s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B]
 76s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB]
 76s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB]
 76s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B]
 76s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB]
 76s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB]
 76s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B]
 76s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB]
 76s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB]
 76s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB]
 76s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB]
 76s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB]
 76s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB]
 76s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B]
 76s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB]
 76s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB]
 76s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB]
 76s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB]
 76s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB]
 76s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB]
 76s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB]
 76s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB]
 76s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB]
 76s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB]
 76s Get:257 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB]
 76s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB]
 76s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB]
 76s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB]
 76s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB]
 76s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu2 [79.3 kB]
 76s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB]
 76s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB]
 76s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB]
 77s Preconfiguring packages ...
 77s Fetched 106 MB in 6s (18.0 MB/s)
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 78s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ...
 78s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ...
 78s Setting up bsdutils (1:2.39.3-9ubuntu2) ...
 78s (Reading database ... 
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 78s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ...
 78s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
 78s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ...
 78s (Reading database ... 
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 78s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ...
 78s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
 78s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ...
 78s (Reading database ... 
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 78s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ...
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 78s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ...
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 78s Preparing to unpack .../libc6_2.39-0ubuntu6_armhf.deb ...
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 78s Setting up libc6:armhf (2.39-0ubuntu6) ...
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 79s Preparing to unpack .../0-libbrotli1_1.1.0-2build1_armhf.deb ...
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 79s Preparing to unpack .../4-libk5crypto3_1.20.1-5.1ubuntu1_armhf.deb ...
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 79s Preparing to unpack .../5-libcom-err2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
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 79s Preparing to unpack .../6-zlib1g_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ...
 79s Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ...
 79s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ...
 79s (Reading database ... 
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 79s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ...
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 79s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ...
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 79s Preparing to unpack .../liblzma5_5.6.0-0.2_armhf.deb ...
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 79s Setting up liblzma5:armhf (5.6.0-0.2) ...
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 79s Preparing to unpack .../0-kmod_31+20240202-2ubuntu4_armhf.deb ...
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 80s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty
 80s Preparing to unpack .../1-libkmod2_31+20240202-2ubuntu4_armhf.deb ...
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 80s Preparing to unpack .../2-systemd-dev_255.4-1ubuntu5_all.deb ...
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 80s Preparing to unpack .../3-systemd-timesyncd_255.4-1ubuntu5_armhf.deb ...
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 80s Preparing to unpack .../4-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ...
 80s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
 80s Preparing to unpack .../5-libaudit-common_1%3a3.1.2-2.1_all.deb ...
 80s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ...
 80s Setting up libaudit-common (1:3.1.2-2.1) ...
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 80s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ...
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 80s Setting up libcap-ng0:armhf (0.8.4-2build1) ...
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 80s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_armhf.deb ...
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 80s Setting up libaudit1:armhf (1:3.1.2-2.1) ...
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 80s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ...
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 80s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ...
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 80s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ...
 80s Unpacking libselinux1:armhf (3.5-2ubuntu1) over (3.5-2build1) ...
 80s Setting up libselinux1:armhf (3.5-2ubuntu1) ...
 80s dpkg: libcurl4:armhf: dependency problems, but removing anyway as you requested:
 80s  curl depends on libcurl4 (= 8.5.0-2ubuntu2).
 80s 
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 80s Removing libcurl4:armhf (8.5.0-2ubuntu2) ...
 80s Selecting previously unselected package libcurl4t64:armhf.
 80s (Reading database ... 
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 80s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_armhf.deb ...
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 80s Preparing to unpack .../curl_8.5.0-2ubuntu7_armhf.deb ...
 80s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
 80s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested:
 80s  wget depends on libpsl5 (>= 0.16.0).
 80s  libcurl3-gnutls:armhf depends on libpsl5 (>= 0.16.0).
 80s 
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 80s Removing libpsl5:armhf (0.21.2-1build1) ...
 80s Selecting previously unselected package libpsl5t64:armhf.
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 80s Preparing to unpack .../libpsl5t64_0.21.2-1.1_armhf.deb ...
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 81s Preparing to unpack .../tnftp_20230507-2build1_armhf.deb ...
 81s Unpacking tnftp (20230507-2build1) over (20230507-2) ...
 81s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested:
 81s  tcpdump depends on libpcap0.8 (>= 1.9.1).
 81s 
 81s (Reading database ... 
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 81s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ...
 81s Selecting previously unselected package libpcap0.8t64:armhf.
 81s (Reading database ... 
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 81s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu1_armhf.deb ...
 81s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ...
 81s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ...
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 81s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ...
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 81s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ...
 81s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 81s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ...
 81s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ...
 81s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ...
 81s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ...
 81s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ...
 81s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ...
 81s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_armhf.deb ...
 81s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
 81s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
 81s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 81s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ...
 81s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 81s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
 81s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 82s Selecting previously unselected package linux-headers-6.8.0-20.
 82s Preparing to unpack .../11-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ...
 82s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ...
 85s Selecting previously unselected package linux-headers-6.8.0-20-generic.
 85s Preparing to unpack .../12-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ...
 85s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
 87s Preparing to unpack .../13-linux-headers-generic_6.8.0-20.20+1_armhf.deb ...
 87s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
 87s (Reading database ... 
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 87s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ...
 87s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested:
 87s  systemd depends on libssl3 (>= 3.0.0).
 87s  libssh-4:armhf depends on libssl3 (>= 3.0.0).
 87s  libsasl2-modules:armhf depends on libssl3 (>= 3.0.0).
 87s  libsasl2-2:armhf depends on libssl3 (>= 3.0.0).
 87s  libpython3.12-minimal:armhf depends on libssl3 (>= 3.0.0).
 87s  libpython3.11-minimal:armhf depends on libssl3 (>= 3.0.0).
 87s  libnvme1 depends on libssl3 (>= 3.0.0).
 87s  libfido2-1:armhf depends on libssl3 (>= 3.0.0).
 87s  libcryptsetup12:armhf depends on libssl3 (>= 3.0.0).
 87s  dhcpcd-base depends on libssl3 (>= 3.0.0).
 87s  bind9-libs:armhf depends on libssl3 (>= 3.0.0).
 87s 
 87s Removing libssl3:armhf (3.0.10-1ubuntu4) ...
 87s Selecting previously unselected package libssl3t64:armhf.
 87s (Reading database ... 
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 87s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ...
 87s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ...
 88s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ...
 88s (Reading database ... 
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 88s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ...
 88s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 88s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ...
 88s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 88s Setting up libudev1:armhf (255.4-1ubuntu5) ...
 88s (Reading database ... 
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 88s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ...
 88s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 89s Preparing to unpack .../udev_255.4-1ubuntu5_armhf.deb ...
 89s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 89s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ...
 89s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 89s Setting up libsystemd0:armhf (255.4-1ubuntu5) ...
 89s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ...
 89s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ...
 89s Setting up systemd-dev (255.4-1ubuntu5) ...
 89s Setting up systemd (255.4-1ubuntu5) ...
 90s (Reading database ... 
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 90s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ...
 90s Installing new version of config file /etc/security/namespace.init ...
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 91s Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_armhf.deb ...
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 91s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ...
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 91s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ...
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 92s Preparing to unpack .../parted_3.6-3.1build2_armhf.deb ...
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 93s Preparing to unpack .../10-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ...
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 94s Preparing to unpack .../11-libtext-iconv-perl_1.7-8build2_armhf.deb ...
 94s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ...
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 94s Preparing to unpack .../13-perl-modules-5.38_5.38.2-3.2_all.deb ...
 94s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
 95s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested:
 95s  perl depends on libperl5.38 (= 5.38.2-3).
 95s 
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 95s Removing libperl5.38:armhf (5.38.2-3) ...
 95s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested:
 95s  iproute2 depends on libdb5.3.
 95s  apt-utils depends on libdb5.3.
 95s 
 95s Removing libdb5.3:armhf (5.3.28+dfsg2-4) ...
 95s Selecting previously unselected package libdb5.3t64:armhf.
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 95s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ...
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 95s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu2_armhf.deb ...
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 95s Preparing to unpack .../man-db_2.12.0-3build4_armhf.deb ...
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 95s Removing libgdbm-compat4:armhf (1.23-5) ...
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 95s Selecting previously unselected package libgdbm6t64:armhf.
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 95s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ...
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 95s Selecting previously unselected package libperl5.38t64:armhf.
 95s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ...
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 96s Setting up perl-base (5.38.2-3.2) ...
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 96s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_armhf.deb ...
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 96s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested:
 96s  libhogweed6:armhf depends on libnettle8.
 96s  libgnutls30:armhf depends on libnettle8 (>= 3.9~).
 96s  libcurl3-gnutls:armhf depends on libnettle8.
 96s  libarchive13:armhf depends on libnettle8.
 96s 
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 96s Removing libnettle8:armhf (3.9.1-2) ...
 96s Selecting previously unselected package libnettle8t64:armhf.
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 97s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ...
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 97s Setting up libnettle8t64:armhf (3.9.1-2.2) ...
 97s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested:
 97s  libgnutls30:armhf depends on libhogweed6 (>= 3.6).
 97s 
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 97s Removing libhogweed6:armhf (3.9.1-2) ...
 97s Selecting previously unselected package libhogweed6t64:armhf.
 97s (Reading database ... 
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 97s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ...
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 97s Setting up libhogweed6t64:armhf (3.9.1-2.2) ...
 97s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested:
 97s  libldap2:armhf depends on libgnutls30 (>= 3.8.2).
 97s  libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2).
 97s  fwupd depends on libgnutls30 (>= 3.7.3).
 97s  dirmngr depends on libgnutls30 (>= 3.8.1).
 97s  apt depends on libgnutls30 (>= 3.8.1).
 97s 
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 97s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ...
 97s Selecting previously unselected package libgnutls30t64:armhf.
 97s (Reading database ... 
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 97s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ...
 97s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
 97s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
 97s (Reading database ... 
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 97s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ...
 97s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
 97s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested:
 97s  libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0).
 97s  fwupd depends on libcurl3-gnutls (>= 7.63.0).
 97s 
 97s (Reading database ... 
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 97s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ...
 97s Selecting previously unselected package libcurl3t64-gnutls:armhf.
 97s (Reading database ... 
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 97s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu7_armhf.deb ...
 97s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ...
 97s Preparing to unpack .../01-shared-mime-info_2.4-1build1_armhf.deb ...
 97s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ...
 97s Preparing to unpack .../02-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ...
 97s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
 97s Preparing to unpack .../03-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ...
 97s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
 97s Preparing to unpack .../04-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ...
 98s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
 98s Preparing to unpack .../05-python3-gi_3.47.0-3build1_armhf.deb ...
 98s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ...
 98s Preparing to unpack .../06-python3-dbus_1.3.2-5build2_armhf.deb ...
 98s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ...
 98s Selecting previously unselected package libnetplan1:armhf.
 98s Preparing to unpack .../07-libnetplan1_1.0-1_armhf.deb ...
 98s Unpacking libnetplan1:armhf (1.0-1) ...
 98s Preparing to unpack .../08-python3-netplan_1.0-1_armhf.deb ...
 98s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ...
 98s Preparing to unpack .../09-netplan-generator_1.0-1_armhf.deb ...
 98s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
 98s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ...
 98s Preparing to unpack .../10-initramfs-tools-bin_0.142ubuntu23_armhf.deb ...
 98s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ...
 98s Preparing to unpack .../11-initramfs-tools-core_0.142ubuntu23_all.deb ...
 98s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ...
 98s Preparing to unpack .../12-initramfs-tools_0.142ubuntu23_all.deb ...
 98s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ...
 98s Preparing to unpack .../13-netplan.io_1.0-1_armhf.deb ...
 98s Unpacking netplan.io (1.0-1) over (0.107.1-3) ...
 98s Preparing to unpack .../14-libxmlb2_0.3.15-1build1_armhf.deb ...
 98s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ...
 99s Preparing to unpack .../15-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ...
 99s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ...
 99s Preparing to unpack .../16-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ...
 99s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ...
 99s Preparing to unpack .../17-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ...
 99s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ...
 99s Preparing to unpack .../18-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ...
 99s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ...
 99s Preparing to unpack .../19-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ...
 99s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ...
 99s (Reading database ... 
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 99s Removing libnetplan0:armhf (0.107.1-3) ...
 99s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested:
 99s  libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0).
 99s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
 99s  libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56).
 99s  libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3).
 99s  libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3).
 99s  libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0).
 99s  libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0).
 99s  libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2).
 99s  fwupd depends on libglib2.0-0 (>= 2.79.0).
 99s  bolt depends on libglib2.0-0 (>= 2.56.0).
 99s 
 99s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ...
 99s Selecting previously unselected package libglib2.0-0t64:armhf.
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 99s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ...
 99s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
 99s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm'
 99s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
 99s Preparing to unpack .../libfwupd2_1.9.15-1_armhf.deb ...
 99s Unpacking libfwupd2:armhf (1.9.15-1) over (1.9.14-1) ...
 99s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested:
 99s  fwupd depends on libarchive13 (>= 3.2.1).
 99s 
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 99s Removing libarchive13:armhf (3.7.2-1ubuntu2) ...
 99s Selecting previously unselected package libarchive13t64:armhf.
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 99s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ...
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 99s Preparing to unpack .../fwupd_1.9.15-1_armhf.deb ...
 99s Unpacking fwupd (1.9.15-1) over (1.9.14-1) ...
 99s Preparing to unpack .../apt-utils_2.7.14_armhf.deb ...
 99s Unpacking apt-utils (2.7.14) over (2.7.12) ...
100s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested:
100s  ubuntu-pro-client depends on libapt-pkg6.0 (>= 1.9~).
100s  python3-apt depends on libapt-pkg6.0 (>= 2.7.11).
100s  apt depends on libapt-pkg6.0 (>= 2.7.12).
100s 
100s (Reading database ... 
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100s Removing libapt-pkg6.0:armhf (2.7.12) ...
100s Selecting previously unselected package libapt-pkg6.0t64:armhf.
100s (Reading database ... 
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100s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ...
100s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ...
100s Setting up libapt-pkg6.0t64:armhf (2.7.14) ...
100s (Reading database ... 
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100s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ...
100s Unpacking apt (2.7.14) over (2.7.12) ...
100s Setting up apt (2.7.14) ...
101s (Reading database ... 
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101s Preparing to unpack .../ubuntu-pro-client-l10n_31.2.1_armhf.deb ...
101s Unpacking ubuntu-pro-client-l10n (31.2.1) over (31.1) ...
101s Preparing to unpack .../ubuntu-pro-client_31.2.1_armhf.deb ...
101s Unpacking ubuntu-pro-client (31.2.1) over (31.1) ...
101s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ...
101s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
101s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested:
101s  gpgv depends on libnpth0 (>= 0.90).
101s  gpgsm depends on libnpth0 (>= 0.90).
101s  gpg-agent depends on libnpth0 (>= 0.90).
101s  gpg depends on libnpth0 (>= 0.90).
101s  dirmngr depends on libnpth0 (>= 0.90).
101s 
101s (Reading database ... 
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101s Removing libnpth0:armhf (1.6-3build2) ...
101s Selecting previously unselected package libnpth0t64:armhf.
101s (Reading database ... 
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101s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ...
101s Unpacking libnpth0t64:armhf (1.6-3.1) ...
101s Setting up libnpth0t64:armhf (1.6-3.1) ...
101s (Reading database ... 
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101s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ...
101s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
101s Setting up gpgv (2.4.4-2ubuntu15) ...
101s (Reading database ... 
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101s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ...
101s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
101s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ...
101s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
101s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ...
101s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
102s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ...
102s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
102s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ...
102s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
102s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested:
102s  gpgconf depends on libreadline8 (>= 6.0).
102s  gawk depends on libreadline8 (>= 6.0).
102s  fdisk depends on libreadline8 (>= 6.0).
102s 
102s (Reading database ... 
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102s Removing libreadline8:armhf (8.2-3) ...
102s Selecting previously unselected package libreadline8t64:armhf.
102s (Reading database ... 
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102s Preparing to unpack .../libreadline8t64_8.2-3.1build1_armhf.deb ...
102s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
102s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
102s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
102s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
102s Unpacking libreadline8t64:armhf (8.2-3.1build1) ...
102s Setting up libreadline8t64:armhf (8.2-3.1build1) ...
102s (Reading database ... 
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102s Preparing to unpack .../00-gawk_1%3a5.2.1-2build2_armhf.deb ...
102s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ...
102s Preparing to unpack .../01-fdisk_2.39.3-9ubuntu2_armhf.deb ...
102s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
102s Preparing to unpack .../02-gpgconf_2.4.4-2ubuntu15_armhf.deb ...
102s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
102s Preparing to unpack .../03-dirmngr_2.4.4-2ubuntu15_armhf.deb ...
102s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
102s Preparing to unpack .../04-gnupg_2.4.4-2ubuntu15_all.deb ...
102s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
102s Preparing to unpack .../05-python3-apt_2.7.6build1_armhf.deb ...
102s Unpacking python3-apt (2.7.6build1) over (2.7.6) ...
103s Preparing to unpack .../06-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ...
103s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ...
103s Preparing to unpack .../07-python3-yaml_6.0.1-2build1_armhf.deb ...
103s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ...
103s Preparing to unpack .../08-python-apt-common_2.7.6build1_all.deb ...
103s Unpacking python-apt-common (2.7.6build1) over (2.7.6) ...
103s Preparing to unpack .../09-python3-setuptools_68.1.2-2ubuntu1_all.deb ...
103s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ...
103s Preparing to unpack .../10-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ...
103s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ...
104s Preparing to unpack .../11-dpkg_1.22.6ubuntu4_armhf.deb ...
104s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
104s Setting up dpkg (1.22.6ubuntu4) ...
104s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ...
104s Setting up libexpat1:armhf (2.6.1-2) ...
104s Setting up python3.12-minimal (3.12.2-4build3) ...
106s (Reading database ... 
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106s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ...
106s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
106s Setting up python3-minimal (3.12.2-0ubuntu1) ...
106s (Reading database ... 
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106s Preparing to unpack .../python3_3.12.2-0ubuntu1_armhf.deb ...
106s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
106s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ...
106s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
106s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_armhf.deb ...
106s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
106s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ...
106s (Reading database ... 
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106s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ...
106s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
106s Preparing to unpack .../1-groff-base_1.23.0-3build1_armhf.deb ...
106s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ...
107s Preparing to unpack .../2-readline-common_8.2-3.1build1_all.deb ...
107s Unpacking readline-common (8.2-3.1build1) over (8.2-3) ...
107s Selecting previously unselected package libgpgme11t64:armhf.
107s Preparing to unpack .../3-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ...
107s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
107s Preparing to unpack .../4-libblockdev-crypto3_3.1.0-1build1_armhf.deb ...
107s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ...
107s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ...
107s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
107s Preparing to unpack .../6-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
107s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
107s Preparing to unpack .../7-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ...
107s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ...
107s Preparing to unpack .../8-libblockdev-fs3_3.1.0-1build1_armhf.deb ...
107s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ...
107s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested:
107s  btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27).
107s 
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107s Removing libreiserfscore0 (1:3.6.27-7) ...
107s Selecting previously unselected package libreiserfscore0t64.
107s (Reading database ... 
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107s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ...
107s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ...
107s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ...
107s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ...
107s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested:
107s  e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1).
107s 
107s (Reading database ... 
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107s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ...
107s Selecting previously unselected package libext2fs2t64:armhf.
107s (Reading database ... 
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107s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
107s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64'
107s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
107s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64'
108s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
108s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
108s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ...
108s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
108s (Reading database ... 
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108s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
108s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
108s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ...
108s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ...
108s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ...
108s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ...
108s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ...
108s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ...
108s (Reading database ... 
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108s Removing libnvme1 (1.8-2) ...
108s Selecting previously unselected package libnvme1t64.
108s (Reading database ... 
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108s Preparing to unpack .../0-libnvme1t64_1.8-3_armhf.deb ...
108s Unpacking libnvme1t64 (1.8-3) ...
108s Preparing to unpack .../1-libblockdev-part3_3.1.0-1build1_armhf.deb ...
108s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ...
108s Preparing to unpack .../2-libblockdev-swap3_3.1.0-1build1_armhf.deb ...
108s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ...
108s Preparing to unpack .../3-libblockdev3_3.1.0-1build1_armhf.deb ...
108s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ...
108s Preparing to unpack .../4-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ...
108s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ...
108s Preparing to unpack .../5-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ...
108s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ...
108s Preparing to unpack .../6-libbpf1_1%3a1.3.0-2build1_armhf.deb ...
108s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ...
108s Preparing to unpack .../7-iproute2_6.1.0-1ubuntu5_armhf.deb ...
108s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ...
108s (Reading database ... 
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108s Removing libelf1:armhf (0.190-1) ...
109s Selecting previously unselected package libelf1t64:armhf.
109s (Reading database ... 
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109s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ...
109s Unpacking libelf1t64:armhf (0.190-1.1build2) ...
109s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
109s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
109s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ...
109s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ...
109s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ...
109s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ...
109s (Reading database ... 
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109s Removing libtirpc3:armhf (1.3.4+ds-1build1) ...
109s Selecting previously unselected package libtirpc3t64:armhf.
109s (Reading database ... 
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109s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ...
109s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64'
109s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
109s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ...
109s Preparing to unpack .../01-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ...
109s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ...
109s Preparing to unpack .../02-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ...
109s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ...
109s Preparing to unpack .../03-libjson-glib-1.0-common_1.8.0-2build1_all.deb ...
109s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ...
109s Preparing to unpack .../04-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ...
109s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ...
109s Preparing to unpack .../05-libnghttp2-14_1.59.0-1build1_armhf.deb ...
109s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ...
109s Preparing to unpack .../06-libssh-4_0.10.6-2build1_armhf.deb ...
109s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ...
109s Preparing to unpack .../07-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ...
109s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ...
109s Preparing to unpack .../08-libgusb2_0.4.8-1build1_armhf.deb ...
109s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ...
109s Preparing to unpack .../09-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ...
109s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ...
109s Preparing to unpack .../10-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ...
109s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ...
109s Preparing to unpack .../11-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
109s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
109s Preparing to unpack .../12-libibverbs1_50.0-2build1_armhf.deb ...
109s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ...
110s Preparing to unpack .../13-libfido2-1_1.14.0-1build1_armhf.deb ...
110s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ...
110s Preparing to unpack .../14-coreutils_9.4-3ubuntu3_armhf.deb ...
110s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ...
110s Setting up coreutils (9.4-3ubuntu3) ...
110s (Reading database ... 
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110s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ...
110s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
110s Setting up util-linux (2.39.3-9ubuntu2) ...
111s fstrim.service is a disabled or a static unit not running, not starting it.
111s (Reading database ... 
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111s Preparing to unpack .../libc-bin_2.39-0ubuntu6_armhf.deb ...
111s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
111s Setting up libc-bin (2.39-0ubuntu6) ...
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111s Removing libatm1:armhf (1:2.5.1-5) ...
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111s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ...
111s Unpacking file (1:5.45-3) over (1:5.45-2) ...
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111s Removing libmagic1:armhf (1:5.45-2) ...
111s (Reading database ... 
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111s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ...
111s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ...
111s Selecting previously unselected package libmagic1t64:armhf.
111s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ...
111s Unpacking libmagic1t64:armhf (1:5.45-3) ...
112s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ...
112s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
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112s Removing libpng16-16:armhf (1.6.43-1) ...
112s Selecting previously unselected package libpng16-16t64:armhf.
112s (Reading database ... 
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112s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ...
112s Unpacking libpng16-16t64:armhf (1.6.43-3) ...
112s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ...
112s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
112s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ...
112s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
112s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ...
112s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
112s (Reading database ... 
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112s Removing libuv1:armhf (1.48.0-1) ...
113s Selecting previously unselected package libuv1t64:armhf.
113s (Reading database ... 
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113s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ...
113s Unpacking libuv1t64:armhf (1.48.0-1.1) ...
113s (Reading database ... 
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113s Removing python3-distutils (3.11.5-1) ...
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113s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ...
113s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
113s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ...
113s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ...
113s Setting up libdebconfclient0:armhf (0.271ubuntu2) ...
113s (Reading database ... 
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113s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ...
113s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ...
113s Setting up libsemanage-common (3.5-1build4) ...
113s (Reading database ... 
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113s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ...
113s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ...
113s Setting up libsemanage2:armhf (3.5-1build4) ...
113s (Reading database ... 
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113s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ...
113s Unpacking install-info (7.1-3build1) over (7.1-3) ...
113s Setting up install-info (7.1-3build1) ...
114s (Reading database ... 
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114s Preparing to unpack .../00-gcc-13-base_13.2.0-19ubuntu1_armhf.deb ...
114s Unpacking gcc-13-base:armhf (13.2.0-19ubuntu1) over (13.2.0-17ubuntu2) ...
114s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
114s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
114s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ...
114s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
114s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_armhf.deb ...
114s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
114s Preparing to unpack .../04-krb5-locales_1.20.1-5.1ubuntu1_all.deb ...
114s Unpacking krb5-locales (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ...
114s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
114s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
114s Preparing to unpack .../06-libslang2_2.3.3-3build1_armhf.deb ...
114s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ...
114s Preparing to unpack .../07-locales_2.39-0ubuntu6_all.deb ...
114s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
115s Preparing to unpack .../08-vim-tiny_2%3a9.1.0016-1ubuntu5_armhf.deb ...
115s Unpacking vim-tiny (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
115s Preparing to unpack .../09-vim-common_2%3a9.1.0016-1ubuntu5_all.deb ...
115s Unpacking vim-common (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
115s Selecting previously unselected package xdg-user-dirs.
115s Preparing to unpack .../10-xdg-user-dirs_0.18-1_armhf.deb ...
115s Unpacking xdg-user-dirs (0.18-1) ...
115s Preparing to unpack .../11-xxd_2%3a9.1.0016-1ubuntu5_armhf.deb ...
115s Unpacking xxd (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
115s Preparing to unpack .../12-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ...
116s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
116s Preparing to unpack .../13-ftp_20230507-2build1_all.deb ...
116s Unpacking ftp (20230507-2build1) over (20230507-2) ...
116s Preparing to unpack .../14-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ...
117s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ...
117s Preparing to unpack .../15-info_7.1-3build1_armhf.deb ...
117s Unpacking info (7.1-3build1) over (7.1-3) ...
117s Preparing to unpack .../16-libxmuu1_2%3a1.1.3-3build1_armhf.deb ...
117s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ...
117s Preparing to unpack .../17-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ...
117s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ...
117s Preparing to unpack .../18-mtr-tiny_0.95-1.1build1_armhf.deb ...
117s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ...
117s Preparing to unpack .../19-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ...
117s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
117s Preparing to unpack .../20-plymouth_24.004.60-1ubuntu6_armhf.deb ...
117s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
117s Preparing to unpack .../21-psmisc_23.7-1_armhf.deb ...
117s Unpacking psmisc (23.7-1) over (23.6-2) ...
117s Preparing to unpack .../22-telnet_0.17+2.5-3ubuntu3_all.deb ...
117s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ...
117s Preparing to unpack .../23-usb.ids_2024.03.18-1_all.deb ...
117s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ...
117s Preparing to unpack .../24-xz-utils_5.6.0-0.2_armhf.deb ...
117s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ...
117s Preparing to unpack .../25-libctf0_2.42-4ubuntu1_armhf.deb ...
117s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
117s Preparing to unpack .../26-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ...
117s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
117s Preparing to unpack .../27-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ...
117s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../28-libbinutils_2.42-4ubuntu1_armhf.deb ...
118s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../29-binutils_2.42-4ubuntu1_armhf.deb ...
118s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../30-binutils-common_2.42-4ubuntu1_armhf.deb ...
118s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../31-libsframe1_2.42-4ubuntu1_armhf.deb ...
118s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../32-bolt_0.9.6-2build1_armhf.deb ...
118s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ...
118s Preparing to unpack .../33-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ...
118s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
118s Preparing to unpack .../34-dpkg-dev_1.22.6ubuntu4_all.deb ...
118s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
118s Preparing to unpack .../35-libdpkg-perl_1.22.6ubuntu4_all.deb ...
118s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
118s Preparing to unpack .../36-gnupg-l10n_2.4.4-2ubuntu15_all.deb ...
118s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
118s Preparing to unpack .../37-ibverbs-providers_50.0-2build1_armhf.deb ...
118s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ...
118s Preparing to unpack .../38-jq_1.7.1-3_armhf.deb ...
118s Unpacking jq (1.7.1-3) over (1.7.1-2) ...
118s Preparing to unpack .../39-libjq1_1.7.1-3_armhf.deb ...
118s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ...
118s Selecting previously unselected package libatm1t64:armhf.
118s Preparing to unpack .../40-libatm1t64_1%3a2.5.1-5.1_armhf.deb ...
118s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ...
119s Preparing to unpack .../41-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ...
119s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ...
119s Preparing to unpack .../42-libftdi1-2_1.5-6build4_armhf.deb ...
119s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ...
119s Preparing to unpack .../43-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ...
119s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
119s Preparing to unpack .../44-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
119s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
119s Preparing to unpack .../45-python3-lib2to3_3.12.2-3ubuntu2_all.deb ...
119s Unpacking python3-lib2to3 (3.12.2-3ubuntu2) over (3.11.5-1) ...
119s Preparing to unpack .../46-python3-pyrsistent_0.20.0-1build1_armhf.deb ...
119s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ...
119s Preparing to unpack .../47-python3-typing-extensions_4.10.0-1_all.deb ...
119s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ...
119s Preparing to unpack .../48-kpartx_0.9.4-5ubuntu6_armhf.deb ...
119s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ...
119s Setting up pinentry-curses (1.2.1-3ubuntu4) ...
119s Setting up libtext-iconv-perl:armhf (1.7-8build2) ...
119s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ...
119s Setting up libibverbs1:armhf (50.0-2build1) ...
119s Setting up systemd-sysv (255.4-1ubuntu5) ...
120s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ...
120s Setting up libatm1t64:armhf (1:2.5.1-5.1) ...
120s Setting up libgdbm6t64:armhf (1.23-5.1) ...
120s Setting up bsdextrautils (2.39.3-9ubuntu2) ...
120s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ...
120s Setting up xdg-user-dirs (0.18-1) ...
120s Setting up ibverbs-providers:armhf (50.0-2build1) ...
120s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ...
120s Setting up libmagic-mgc (1:5.45-3) ...
120s Setting up gawk (1:5.2.1-2build2) ...
120s Setting up psmisc (23.7-1) ...
120s Setting up libjq1:armhf (1.7.1-3) ...
120s Setting up libtirpc-common (1.3.4+ds-1.1) ...
120s Setting up libbrotli1:armhf (1.1.0-2build1) ...
120s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ...
120s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ...
120s Setting up libuv1t64:armhf (1.48.0-1.1) ...
120s Setting up libmagic1t64:armhf (1:5.45-3) ...
120s Setting up binutils-common:armhf (2.42-4ubuntu1) ...
120s Setting up libpsl5t64:armhf (0.21.2-1.1) ...
120s Setting up libnghttp2-14:armhf (1.59.0-1build1) ...
120s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ...
120s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ...
120s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ...
120s Setting up krb5-locales (1.20.1-5.1ubuntu1) ...
120s Setting up file (1:5.45-3) ...
120s Setting up kmod (31+20240202-2ubuntu4) ...
120s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ...
120s Setting up locales (2.39-0ubuntu6) ...
121s Generating locales (this might take a while)...
123s   en_US.UTF-8... done
123s Generation complete.
123s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ...
123s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ...
123s Setting up xxd (2:9.1.0016-1ubuntu5) ...
123s Setting up libsframe1:armhf (2.42-4ubuntu1) ...
123s Setting up libelf1t64:armhf (0.190-1.1build2) ...
123s Setting up libkrb5support0:armhf (1.20.1-5.1ubuntu1) ...
123s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
123s Setting up eject (2.39.3-9ubuntu2) ...
123s Setting up apparmor (4.0.0-beta3-0ubuntu2) ...
123s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
123s Installing new version of config file /etc/apparmor.d/abstractions/crypto ...
123s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ...
123s Installing new version of config file /etc/apparmor.d/abstractions/openssl ...
123s Installing new version of config file /etc/apparmor.d/code ...
123s Installing new version of config file /etc/apparmor.d/firefox ...
124s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory
124s Reloading AppArmor profiles 
124s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "busybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
124s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
124s 
125s /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "nautilus".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "toybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
125s 
125s Error: At least one profile failed to load
125s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
125s No schema files found: doing nothing.
125s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
125s Setting up vim-common (2:9.1.0016-1ubuntu5) ...
125s Setting up gcc-13-base:armhf (13.2.0-19ubuntu1) ...
125s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ...
125s Setting up libslang2:armhf (2.3.3-3build1) ...
125s Setting up libnvme1t64 (1.8-3) ...
125s Setting up mtr-tiny (0.95-1.1build1) ...
125s Setting up gnupg-l10n (2.4.4-2ubuntu15) ...
125s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ...
125s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ...
125s Setting up xz-utils (5.6.0-0.2) ...
125s Setting up perl-modules-5.38 (5.38.2-3.2) ...
125s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ...
125s Setting up libpng16-16t64:armhf (1.6.43-3) ...
125s Setting up systemd-timesyncd (255.4-1ubuntu5) ...
125s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ...
125s Setting up udev (255.4-1ubuntu5) ...
126s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ...
126s Setting up usb.ids (2024.03.18-1) ...
126s Setting up sudo (1.9.15p5-3ubuntu3) ...
126s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ...
126s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ...
126s Setting up libk5crypto3:armhf (1.20.1-5.1ubuntu1) ...
126s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ...
126s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ...
126s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
126s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ...
126s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ...
126s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ...
126s Setting up python-apt-common (2.7.6build1) ...
126s Setting up mount (2.39.3-9ubuntu2) ...
126s Setting up dmsetup (2:1.02.185-3ubuntu2) ...
126s Setting up uuid-runtime (2.39.3-9ubuntu2) ...
127s uuidd.service is a disabled or a static unit not running, not starting it.
127s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ...
127s Setting up groff-base (1.23.0-3build1) ...
127s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ...
127s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ...
127s Setting up kpartx (0.9.4-5ubuntu6) ...
127s Setting up jq (1.7.1-3) ...
127s Setting up gpgconf (2.4.4-2ubuntu15) ...
127s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ...
127s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ...
127s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ...
127s Setting up libjson-glib-1.0-common (1.8.0-2build1) ...
127s Setting up libkrb5-3:armhf (1.20.1-5.1ubuntu1) ...
127s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ...
127s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ...
127s Setting up libperl5.38t64:armhf (5.38.2-3.2) ...
127s Setting up tnftp (20230507-2build1) ...
127s Setting up libbinutils:armhf (2.42-4ubuntu1) ...
127s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ...
127s Setting up libfido2-1:armhf (1.14.0-1build1) ...
127s Setting up openssl (3.0.13-0ubuntu2) ...
127s Setting up readline-common (8.2-3.1build1) ...
127s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ...
127s Setting up libxmuu1:armhf (2:1.1.3-3build1) ...
127s Setting up dbus-bin (1.14.10-4ubuntu2) ...
127s Setting up info (7.1-3build1) ...
127s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ...
127s Setting up gpg (2.4.4-2ubuntu15) ...
127s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ...
127s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ...
127s Setting up libbpf1:armhf (1:1.3.0-2build1) ...
127s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ...
127s Setting up rsync (3.2.7-1build1) ...
128s rsync.service is a disabled or a static unit not running, not starting it.
128s Setting up libudisks2-0:armhf (2.10.1-6) ...
128s Setting up bolt (0.9.6-2build1) ...
128s bolt.service is a disabled or a static unit not running, not starting it.
128s Setting up gnupg-utils (2.4.4-2ubuntu15) ...
128s Setting up initramfs-tools-bin (0.142ubuntu23) ...
128s Setting up libctf0:armhf (2.42-4ubuntu1) ...
128s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ...
128s Setting up python3.11-minimal (3.11.8-1build4) ...
130s Setting up tcpdump (4.99.4-3ubuntu2) ...
130s apparmor_parser: Unable to replace "tcpdump".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
130s 
130s Setting up apt-utils (2.7.14) ...
130s Setting up gpg-agent (2.4.4-2ubuntu15) ...
130s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ...
130s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ...
130s Setting up wget (1.21.4-1ubuntu2) ...
130s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ...
130s Setting up plymouth (24.004.60-1ubuntu6) ...
130s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
130s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
131s Setting up libxmlb2:armhf (0.3.15-1build1) ...
131s Setting up btrfs-progs (6.6.3-1.1build1) ...
131s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ...
131s Setting up python3.12 (3.12.2-4build3) ...
132s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ...
132s Setting up gpgsm (2.4.4-2ubuntu15) ...
132s Setting up inetutils-telnet (2:2.5-3ubuntu3) ...
132s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ...
132s update-initramfs: deferring update (trigger activated)
133s e2scrub_all.service is a disabled or a static unit not running, not starting it.
133s Setting up libparted2t64:armhf (3.6-3.1build2) ...
133s Setting up linux-headers-generic (6.8.0-20.20+1) ...
133s Setting up dbus-daemon (1.14.10-4ubuntu2) ...
133s Setting up libmbim-proxy (1.31.2-0ubuntu2) ...
133s Setting up vim-tiny (2:9.1.0016-1ubuntu5) ...
133s Setting up libnetplan1:armhf (1.0-1) ...
133s Setting up man-db (2.12.0-3build4) ...
133s Updating database of manual pages ...
134s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
134s 
134s man-db.service is a disabled or a static unit not running, not starting it.
135s Setting up libblockdev3:armhf (3.1.0-1build1) ...
135s Setting up fdisk (2.39.3-9ubuntu2) ...
135s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ...
135s Setting up libblockdev-part3:armhf (3.1.0-1build1) ...
135s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ...
135s Setting up libftdi1-2:armhf (1.5-6build4) ...
135s Setting up perl (5.38.2-3.2) ...
135s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ...
135s update-initramfs: deferring update (trigger activated)
135s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ...
135s Setting up dbus (1.14.10-4ubuntu2) ...
135s A reboot is required to replace the running dbus-daemon.
135s Please reboot the system when convenient.
135s Setting up shared-mime-info (2.4-1build1) ...
135s Setting up libgssapi-krb5-2:armhf (1.20.1-5.1ubuntu1) ...
135s Setting up ftp (20230507-2build1) ...
135s Setting up keyboxd (2.4.4-2ubuntu15) ...
135s Setting up libdpkg-perl (1.22.6ubuntu4) ...
135s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ...
135s Setting up libssh-4:armhf (0.10.6-2build1) ...
135s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ...
136s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ...
136s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
136s Setting up netplan-generator (1.0-1) ...
136s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
136s Setting up initramfs-tools-core (0.142ubuntu23) ...
136s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ...
136s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
136s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ...
136s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ...
136s Setting up systemd-resolved (255.4-1ubuntu5) ...
136s Setting up python3.11 (3.11.8-1build4) ...
137s Setting up telnet (0.17+2.5-3ubuntu3) ...
137s Setting up initramfs-tools (0.142ubuntu23) ...
137s update-initramfs: deferring update (trigger activated)
137s Setting up libcurl4t64:armhf (8.5.0-2ubuntu7) ...
137s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ...
137s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ...
137s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ...
137s Setting up iproute2 (6.1.0-1ubuntu5) ...
137s Setting up openssh-client (1:9.6p1-3ubuntu11) ...
137s Setting up libgusb2:armhf (0.4.8-1build1) ...
137s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ...
137s Setting up parted (3.6-3.1build2) ...
137s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ...
137s Setting up python3 (3.12.2-0ubuntu1) ...
138s Setting up binutils (2.42-4ubuntu1) ...
138s Setting up libjcat1:armhf (0.2.0-2build2) ...
138s Setting up dpkg-dev (1.22.6ubuntu4) ...
138s Setting up dirmngr (2.4.4-2ubuntu15) ...
138s Setting up dbus-user-session (1.14.10-4ubuntu2) ...
138s Setting up python3-cryptography (41.0.7-4build2) ...
138s Setting up python3-gi (3.47.0-3build1) ...
138s Setting up python3-typing-extensions (4.10.0-1) ...
139s Setting up lsof (4.95.0-1build2) ...
139s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ...
139s Setting up libnsl2:armhf (1.3.0-3build2) ...
139s Setting up gnupg (2.4.4-2ubuntu15) ...
139s Setting up python3-netplan (1.0-1) ...
139s Setting up curl (8.5.0-2ubuntu7) ...
139s Setting up libvolume-key1:armhf (0.3.12-7build1) ...
139s Setting up bind9-host (1:9.18.24-0ubuntu3) ...
139s Setting up python3-lib2to3 (3.12.2-3ubuntu2) ...
139s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
139s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ...
139s Setting up python3-dbus (1.3.2-5build2) ...
140s Setting up python3-setuptools (68.1.2-2ubuntu1) ...
140s Setting up gpg-wks-client (2.4.4-2ubuntu15) ...
140s Setting up openssh-server (1:9.6p1-3ubuntu11) ...
140s Replacing config file /etc/ssh/sshd_config with new version
142s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket.

143s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ...
143s Setting up python3-gdbm:armhf (3.12.2-3ubuntu2) ...
143s Setting up python3-apt (2.7.6build1) ...
143s Setting up libfwupd2:armhf (1.9.15-1) ...
143s Setting up python3-yaml (6.0.1-2build1) ...
143s Setting up libqmi-proxy (1.35.2-0ubuntu1) ...
143s Setting up netplan.io (1.0-1) ...
143s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ...
143s Setting up ubuntu-pro-client (31.2.1) ...
143s apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
143s 
145s Setting up fwupd (1.9.15-1) ...
145s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
145s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
145s fwupd.service is a disabled or a static unit not running, not starting it.
145s Setting up ubuntu-pro-client-l10n (31.2.1) ...
145s Setting up udisks2 (2.10.1-6) ...
145s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied

145s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied

145s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied

145s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied

145s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied

145s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied

145s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied

145s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied

145s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied

145s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied

145s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied

145s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied

146s Processing triggers for ufw (0.36.2-5) ...
146s Processing triggers for systemd (255.4-1ubuntu5) ...
146s Processing triggers for install-info (7.1-3build1) ...
146s Processing triggers for libc-bin (2.39-0ubuntu6) ...
146s Processing triggers for initramfs-tools (0.142ubuntu23) ...
147s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s The following packages will be REMOVED:
148s   linux-headers-6.8.0-11* python3-lib2to3*
149s 0 upgraded, 0 newly installed, 2 to remove and 1 not upgraded.
149s After this operation, 85.8 MB disk space will be freed.
149s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78592 files and directories currently installed.)
149s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ...
150s Removing python3-lib2to3 (3.12.2-3ubuntu2) ...
152s autopkgtest [02:09:51]: rebooting testbed after setup commands that affected boot
191s autopkgtest [02:10:30]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024
216s autopkgtest [02:10:55]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-unitizer
226s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-unitizer 1.4.20-1 (dsc) [2167 B]
226s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-unitizer 1.4.20-1 (tar) [609 kB]
226s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-unitizer 1.4.20-1 (diff) [3464 B]
226s gpgv: Signature made Fri Oct 27 13:07:12 2023 UTC
226s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
226s gpgv:                issuer "tille@debian.org"
226s gpgv: Can't check signature: No public key
226s dpkg-source: warning: cannot verify inline signature for ./r-cran-unitizer_1.4.20-1.dsc: no acceptable signature found
226s autopkgtest [02:11:05]: testing package r-cran-unitizer version 1.4.20-1
228s autopkgtest [02:11:07]: build not needed
231s autopkgtest [02:11:10]: test run-unit-test: preparing testbed
240s Reading package lists...
240s Building dependency tree...
240s Reading state information...
241s Starting pkgProblemResolver with broken count: 0
241s Starting 2 pkgProblemResolver with broken count: 0
241s Done
241s The following additional packages will be installed:
241s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
241s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax
241s   javascript-common libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1
241s   libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6
241s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3
241s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
241s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
241s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
241s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblerc4
241s   liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
241s   libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
241s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
242s   libxft2 libxrender1 libxss1 libxt6t64 littler node-bootstrap-sass
242s   node-html5shiv node-normalize.css pandoc pandoc-data r-base-core
242s   r-cran-base64enc r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark
242s   r-cran-crayon r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate
242s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr
242s   r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr
242s   r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise
242s   r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs
242s   r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-shiny
242s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex
242s   r-cran-unitizer r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable
242s   r-cran-yaml unzip x11-common xdg-utils zip
242s Suggested packages:
242s   apache2 | lighttpd | httpd libjs-jquery-ui-docs fonts-mathjax-extras
242s   fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended
242s   texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context
242s   wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex
242s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
242s   r-base-html r-cran-rstudioapi r-cran-markdown r-cran-testthat r-cran-getopt
242s   r-cran-covr r-cran-httr r-cran-roxygen2 r-cran-inline r-cran-plm r-cran-zoo
242s   r-cran-survival
242s Recommended packages:
242s   node-jquery r-recommended r-base-dev r-doc-html r-cran-curl r-cran-ggplot2
242s   r-cran-testthat r-cran-thematic r-cran-callr r-cran-covr r-cran-htmlwidgets
242s   r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi
242s   r-cran-tibble r-cran-whoami r-cran-xml2 r-cran-lattice r-cran-dplyr
242s   r-cran-rsvg r-cran-pillar r-cran-spelling r-cran-dbi r-cran-rsqlite
242s   r-cran-waldo r-cran-testit r-cran-cairo r-cran-markdown r-cran-ragg
242s   r-cran-httr r-cran-r.rsp r-cran-sf r-cran-codetools r-cran-formatr
242s   r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate
242s   r-cran-rgl r-cran-tikzdevice r-cran-webshot r-cran-svglite node-highlight.js
242s   r-cran-lintr r-cran-tidyverse r-cran-future r-cran-purrr r-cran-usethis
242s   r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-bit64 r-cran-generics
242s   r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv r-cran-runit
242s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
242s   x11-xserver-utils
242s The following NEW packages will be installed:
242s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
242s   fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
242s   fonts-mathjax javascript-common libblas3 libcairo2 libdatrie1 libdeflate0
242s   libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3
242s   libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap
242s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
242s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
242s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
242s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3
242s   liblerc4 liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
242s   libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
242s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
242s   libxft2 libxrender1 libxss1 libxt6t64 littler node-bootstrap-sass
242s   node-html5shiv node-normalize.css pandoc pandoc-data r-base-core
242s   r-cran-base64enc r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark
242s   r-cran-crayon r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate
242s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr
242s   r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr
242s   r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise
242s   r-cran-mime r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs
242s   r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-sass r-cran-shiny
242s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tinytex
242s   r-cran-unitizer r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable
242s   r-cran-yaml unzip x11-common xdg-utils zip
242s 0 upgraded, 119 newly installed, 0 to remove and 1 not upgraded.
242s Need to get 107 MB/107 MB of archives.
242s After this operation, 406 MB of additional disk space will be used.
242s Get:1 /tmp/autopkgtest.HV3Vlf/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B]
242s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfreetype6 armhf 2.13.2+dfsg-1build2 [331 kB]
242s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
242s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
242s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu1 [37.4 kB]
242s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu1 [113 kB]
242s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig armhf 2.15.0-1.1ubuntu1 [189 kB]
242s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
242s Get:9 http://ftpmaster.internal/ubuntu noble/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
242s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
242s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf javascript-common all 11+nmu1 [5936 B]
242s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB]
242s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB]
242s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB]
242s Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B]
242s Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB]
242s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcairo2 armhf 1.18.0-1ubuntu1 [482 kB]
242s Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libdatrie1 armhf 0.2.13-3 [16.9 kB]
242s Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB]
242s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran5 armhf 14-20240315-1ubuntu1 [312 kB]
242s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240315-1ubuntu1 [125 kB]
242s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libgraphite2-3 armhf 1.3.14-2 [72.7 kB]
242s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libharfbuzz0b armhf 8.3.0-2build1 [446 kB]
242s Get:24 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB]
242s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB]
242s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB]
242s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
242s Get:28 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
242s Get:29 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
242s Get:30 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
243s Get:31 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-d3 all 3.5.17-4 [132 kB]
243s Get:32 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-es5-shim all 4.6.7-2 [39.8 kB]
243s Get:33 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
243s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
243s Get:35 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
243s Get:36 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
243s Get:37 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
243s Get:38 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
243s Get:39 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
243s Get:40 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
243s Get:41 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
243s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB]
243s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB]
243s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblua5.4-0 armhf 5.4.6-3build1 [133 kB]
243s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libthai-data all 0.1.29-2 [158 kB]
243s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libthai0 armhf 0.1.29-2 [15.1 kB]
243s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [206 kB]
243s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [36.4 kB]
243s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [24.9 kB]
243s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB]
243s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libpaper-utils armhf 1.1.29 [8170 B]
243s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsharpyuv0 armhf 1.3.2-0.4build2 [13.6 kB]
243s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB]
243s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [903 kB]
243s Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB]
243s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libwebp7 armhf 1.3.2-0.4build2 [183 kB]
243s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu1 [178 kB]
243s Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB]
243s Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B]
243s Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
243s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxt6t64 armhf 1:1.2.1-1.2 [145 kB]
243s Get:62 http://ftpmaster.internal/ubuntu noble/main armhf zip armhf 3.0-13 [162 kB]
243s Get:63 http://ftpmaster.internal/ubuntu noble/main armhf unzip armhf 6.0-28ubuntu3 [163 kB]
243s Get:64 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
243s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-core armhf 4.3.3-2build1 [26.6 MB]
244s Get:66 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-littler armhf 0.3.19-1 [80.8 kB]
244s Get:67 http://ftpmaster.internal/ubuntu noble/universe armhf littler all 0.3.19-1 [2472 B]
244s Get:68 http://ftpmaster.internal/ubuntu noble/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB]
244s Get:69 http://ftpmaster.internal/ubuntu noble/universe armhf node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
244s Get:70 http://ftpmaster.internal/ubuntu noble/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB]
244s Get:71 http://ftpmaster.internal/ubuntu noble/universe armhf pandoc-data all 3.1.3-1 [92.4 kB]
244s Get:72 http://ftpmaster.internal/ubuntu noble/universe armhf pandoc armhf 3.1.3+ds-2 [31.9 MB]
244s Get:73 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB]
244s Get:74 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rlang armhf 1.1.3-1 [1658 kB]
244s Get:75 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-fastmap armhf 1.1.1-1 [68.1 kB]
244s Get:76 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cachem armhf 1.0.8-1 [72.0 kB]
244s Get:77 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-digest armhf 0.6.34-1 [180 kB]
244s Get:78 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ellipsis armhf 0.3.2-2 [35.0 kB]
244s Get:79 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-htmltools armhf 0.5.7-1 [368 kB]
244s Get:80 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
244s Get:81 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [438 kB]
244s Get:82 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB]
244s Get:83 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB]
244s Get:84 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
244s Get:85 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-memoise all 2.0.1-1 [53.9 kB]
244s Get:86 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mime armhf 0.12-1 [35.5 kB]
244s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-fs armhf 1.6.3+dfsg-1build1 [226 kB]
244s Get:88 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB]
244s Get:89 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB]
244s Get:90 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-sass armhf 0.4.8+dfsg-1 [921 kB]
244s Get:91 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
245s Get:92 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-commonmark armhf 1.9.1-1 [110 kB]
245s Get:93 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-crayon all 1.5.2-1 [164 kB]
245s Get:94 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-diffobj armhf 0.3.5-1 [1115 kB]
245s Get:95 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-evaluate all 0.23-1 [90.2 kB]
245s Get:96 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-fontawesome all 0.5.2-1 [1300 kB]
245s Get:97 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-xfun armhf 0.41+dfsg-1 [415 kB]
245s Get:98 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-highr all 0.10+dfsg-1 [38.3 kB]
245s Get:99 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
245s Get:100 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rcpp armhf 1.0.12-1 [1968 kB]
245s Get:101 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-later armhf 1.3.2+dfsg-1 [118 kB]
245s Get:102 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB]
245s Get:103 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-promises armhf 1.2.1+dfsg-1 [281 kB]
245s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-httpuv armhf 1.6.14+dfsg-1build1 [489 kB]
245s Get:105 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-yaml armhf 2.3.8-1 [99.0 kB]
245s Get:106 http://ftpmaster.internal/ubuntu noble/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
245s Get:107 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-knitr all 1.45+dfsg-1 [917 kB]
245s Get:108 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-stringi armhf 1.8.3-1 [859 kB]
245s Get:109 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB]
245s Get:110 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-stringr all 1.5.1-1 [290 kB]
245s Get:111 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tinytex all 0.49-1 [141 kB]
245s Get:112 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
246s Get:113 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
246s Get:114 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-sourcetools armhf 0.1.7-1-1 [45.7 kB]
246s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-withr all 3.0.0+dfsg-1 [228 kB]
246s Get:116 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
246s Get:117 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
246s Get:118 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
246s Get:119 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-unitizer all 1.4.20-1 [1419 kB]
246s Preconfiguring packages ...
246s Fetched 107 MB in 4s (26.0 MB/s)
246s Selecting previously unselected package libfreetype6:armhf.
246s (Reading database ... 
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246s Preparing to unpack .../000-libfreetype6_2.13.2+dfsg-1build2_armhf.deb ...
246s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build2) ...
246s Selecting previously unselected package fonts-dejavu-mono.
246s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ...
246s Unpacking fonts-dejavu-mono (2.37-8) ...
246s Selecting previously unselected package fonts-dejavu-core.
246s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ...
246s Unpacking fonts-dejavu-core (2.37-8) ...
246s Selecting previously unselected package fontconfig-config.
247s Preparing to unpack .../003-fontconfig-config_2.15.0-1.1ubuntu1_armhf.deb ...
247s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ...
247s Selecting previously unselected package libfontconfig1:armhf.
247s Preparing to unpack .../004-libfontconfig1_2.15.0-1.1ubuntu1_armhf.deb ...
247s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
247s Selecting previously unselected package fontconfig.
247s Preparing to unpack .../005-fontconfig_2.15.0-1.1ubuntu1_armhf.deb ...
247s Unpacking fontconfig (2.15.0-1.1ubuntu1) ...
247s Selecting previously unselected package fonts-font-awesome.
247s Preparing to unpack .../006-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
247s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
247s Selecting previously unselected package fonts-glyphicons-halflings.
247s Preparing to unpack .../007-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
247s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
247s Selecting previously unselected package fonts-mathjax.
247s Preparing to unpack .../008-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
247s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
247s Selecting previously unselected package javascript-common.
247s Preparing to unpack .../009-javascript-common_11+nmu1_all.deb ...
247s Unpacking javascript-common (11+nmu1) ...
247s Selecting previously unselected package libblas3:armhf.
247s Preparing to unpack .../010-libblas3_3.12.0-3_armhf.deb ...
247s Unpacking libblas3:armhf (3.12.0-3) ...
247s Selecting previously unselected package libpixman-1-0:armhf.
247s Preparing to unpack .../011-libpixman-1-0_0.42.2-1_armhf.deb ...
247s Unpacking libpixman-1-0:armhf (0.42.2-1) ...
247s Selecting previously unselected package libxcb-render0:armhf.
247s Preparing to unpack .../012-libxcb-render0_1.15-1_armhf.deb ...
247s Unpacking libxcb-render0:armhf (1.15-1) ...
247s Selecting previously unselected package libxcb-shm0:armhf.
247s Preparing to unpack .../013-libxcb-shm0_1.15-1_armhf.deb ...
247s Unpacking libxcb-shm0:armhf (1.15-1) ...
247s Selecting previously unselected package libxrender1:armhf.
247s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
247s Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
247s Selecting previously unselected package libcairo2:armhf.
247s Preparing to unpack .../015-libcairo2_1.18.0-1ubuntu1_armhf.deb ...
247s Unpacking libcairo2:armhf (1.18.0-1ubuntu1) ...
247s Selecting previously unselected package libdatrie1:armhf.
247s Preparing to unpack .../016-libdatrie1_0.2.13-3_armhf.deb ...
247s Unpacking libdatrie1:armhf (0.2.13-3) ...
247s Selecting previously unselected package libdeflate0:armhf.
247s Preparing to unpack .../017-libdeflate0_1.19-1_armhf.deb ...
247s Unpacking libdeflate0:armhf (1.19-1) ...
247s Selecting previously unselected package libgfortran5:armhf.
247s Preparing to unpack .../018-libgfortran5_14-20240315-1ubuntu1_armhf.deb ...
247s Unpacking libgfortran5:armhf (14-20240315-1ubuntu1) ...
247s Selecting previously unselected package libgomp1:armhf.
247s Preparing to unpack .../019-libgomp1_14-20240315-1ubuntu1_armhf.deb ...
247s Unpacking libgomp1:armhf (14-20240315-1ubuntu1) ...
247s Selecting previously unselected package libgraphite2-3:armhf.
248s Preparing to unpack .../020-libgraphite2-3_1.3.14-2_armhf.deb ...
248s Unpacking libgraphite2-3:armhf (1.3.14-2) ...
248s Selecting previously unselected package libharfbuzz0b:armhf.
248s Preparing to unpack .../021-libharfbuzz0b_8.3.0-2build1_armhf.deb ...
248s Unpacking libharfbuzz0b:armhf (8.3.0-2build1) ...
248s Selecting previously unselected package x11-common.
248s Preparing to unpack .../022-x11-common_1%3a7.7+23ubuntu2_all.deb ...
248s Unpacking x11-common (1:7.7+23ubuntu2) ...
248s Selecting previously unselected package libice6:armhf.
248s Preparing to unpack .../023-libice6_2%3a1.0.10-1build2_armhf.deb ...
248s Unpacking libice6:armhf (2:1.0.10-1build2) ...
248s Selecting previously unselected package libjpeg-turbo8:armhf.
248s Preparing to unpack .../024-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ...
248s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
248s Selecting previously unselected package libjpeg8:armhf.
248s Preparing to unpack .../025-libjpeg8_8c-2ubuntu11_armhf.deb ...
248s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
248s Selecting previously unselected package libjs-bootstrap.
248s Preparing to unpack .../026-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
248s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
248s Selecting previously unselected package libjs-popper.js.
248s Preparing to unpack .../027-libjs-popper.js_1.16.1+ds-6_all.deb ...
248s Unpacking libjs-popper.js (1.16.1+ds-6) ...
248s Selecting previously unselected package libjs-bootstrap4.
248s Preparing to unpack .../028-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
248s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
248s Selecting previously unselected package libjs-d3.
248s Preparing to unpack .../029-libjs-d3_3.5.17-4_all.deb ...
248s Unpacking libjs-d3 (3.5.17-4) ...
248s Selecting previously unselected package libjs-es5-shim.
248s Preparing to unpack .../030-libjs-es5-shim_4.6.7-2_all.deb ...
248s Unpacking libjs-es5-shim (4.6.7-2) ...
248s Selecting previously unselected package libjs-highlight.js.
248s Preparing to unpack .../031-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
248s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
248s Selecting previously unselected package libjs-jquery.
248s Preparing to unpack .../032-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
248s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
248s Selecting previously unselected package libjs-jquery-datatables.
248s Preparing to unpack .../033-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
248s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
248s Selecting previously unselected package libjs-sifter.js.
248s Preparing to unpack .../034-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
248s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
248s Selecting previously unselected package libjs-microplugin.js.
248s Preparing to unpack .../035-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
248s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
248s Selecting previously unselected package libjs-jquery-selectize.js.
248s Preparing to unpack .../036-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
248s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
248s Selecting previously unselected package libjs-jquery-ui.
248s Preparing to unpack .../037-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
248s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
248s Selecting previously unselected package libjs-json.
248s Preparing to unpack .../038-libjs-json_0~20221030+~1.0.8-1_all.deb ...
248s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
248s Selecting previously unselected package libjs-prettify.
248s Preparing to unpack .../039-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
248s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
248s Selecting previously unselected package liblapack3:armhf.
248s Preparing to unpack .../040-liblapack3_3.12.0-3_armhf.deb ...
248s Unpacking liblapack3:armhf (3.12.0-3) ...
249s Selecting previously unselected package liblerc4:armhf.
249s Preparing to unpack .../041-liblerc4_4.0.0+ds-4ubuntu1_armhf.deb ...
249s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu1) ...
249s Selecting previously unselected package liblua5.4-0:armhf.
249s Preparing to unpack .../042-liblua5.4-0_5.4.6-3build1_armhf.deb ...
249s Unpacking liblua5.4-0:armhf (5.4.6-3build1) ...
249s Selecting previously unselected package libthai-data.
249s Preparing to unpack .../043-libthai-data_0.1.29-2_all.deb ...
249s Unpacking libthai-data (0.1.29-2) ...
249s Selecting previously unselected package libthai0:armhf.
249s Preparing to unpack .../044-libthai0_0.1.29-2_armhf.deb ...
249s Unpacking libthai0:armhf (0.1.29-2) ...
249s Selecting previously unselected package libpango-1.0-0:armhf.
249s Preparing to unpack .../045-libpango-1.0-0_1.52.1+ds-1_armhf.deb ...
249s Unpacking libpango-1.0-0:armhf (1.52.1+ds-1) ...
249s Selecting previously unselected package libpangoft2-1.0-0:armhf.
249s Preparing to unpack .../046-libpangoft2-1.0-0_1.52.1+ds-1_armhf.deb ...
249s Unpacking libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
249s Selecting previously unselected package libpangocairo-1.0-0:armhf.
249s Preparing to unpack .../047-libpangocairo-1.0-0_1.52.1+ds-1_armhf.deb ...
249s Unpacking libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
249s Selecting previously unselected package libpaper1:armhf.
249s Preparing to unpack .../048-libpaper1_1.1.29_armhf.deb ...
249s Unpacking libpaper1:armhf (1.1.29) ...
249s Selecting previously unselected package libpaper-utils.
249s Preparing to unpack .../049-libpaper-utils_1.1.29_armhf.deb ...
249s Unpacking libpaper-utils (1.1.29) ...
249s Selecting previously unselected package libsharpyuv0:armhf.
249s Preparing to unpack .../050-libsharpyuv0_1.3.2-0.4build2_armhf.deb ...
249s Unpacking libsharpyuv0:armhf (1.3.2-0.4build2) ...
249s Selecting previously unselected package libsm6:armhf.
249s Preparing to unpack .../051-libsm6_2%3a1.2.3-1build2_armhf.deb ...
249s Unpacking libsm6:armhf (2:1.2.3-1build2) ...
249s Selecting previously unselected package libtcl8.6:armhf.
249s Preparing to unpack .../052-libtcl8.6_8.6.14+dfsg-1_armhf.deb ...
249s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1) ...
249s Selecting previously unselected package libjbig0:armhf.
249s Preparing to unpack .../053-libjbig0_2.1-6.1ubuntu1_armhf.deb ...
249s Unpacking libjbig0:armhf (2.1-6.1ubuntu1) ...
249s Selecting previously unselected package libwebp7:armhf.
249s Preparing to unpack .../054-libwebp7_1.3.2-0.4build2_armhf.deb ...
249s Unpacking libwebp7:armhf (1.3.2-0.4build2) ...
249s Selecting previously unselected package libtiff6:armhf.
249s Preparing to unpack .../055-libtiff6_4.5.1+git230720-4ubuntu1_armhf.deb ...
249s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
249s Selecting previously unselected package libxft2:armhf.
249s Preparing to unpack .../056-libxft2_2.3.6-1_armhf.deb ...
249s Unpacking libxft2:armhf (2.3.6-1) ...
249s Selecting previously unselected package libxss1:armhf.
249s Preparing to unpack .../057-libxss1_1%3a1.2.3-1build2_armhf.deb ...
249s Unpacking libxss1:armhf (1:1.2.3-1build2) ...
249s Selecting previously unselected package libtk8.6:armhf.
249s Preparing to unpack .../058-libtk8.6_8.6.13-2_armhf.deb ...
249s Unpacking libtk8.6:armhf (8.6.13-2) ...
249s Selecting previously unselected package libxt6t64:armhf.
249s Preparing to unpack .../059-libxt6t64_1%3a1.2.1-1.2_armhf.deb ...
249s Unpacking libxt6t64:armhf (1:1.2.1-1.2) ...
249s Selecting previously unselected package zip.
249s Preparing to unpack .../060-zip_3.0-13_armhf.deb ...
249s Unpacking zip (3.0-13) ...
249s Selecting previously unselected package unzip.
249s Preparing to unpack .../061-unzip_6.0-28ubuntu3_armhf.deb ...
249s Unpacking unzip (6.0-28ubuntu3) ...
249s Selecting previously unselected package xdg-utils.
249s Preparing to unpack .../062-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
249s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
249s Selecting previously unselected package r-base-core.
249s Preparing to unpack .../063-r-base-core_4.3.3-2build1_armhf.deb ...
249s Unpacking r-base-core (4.3.3-2build1) ...
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251s Selecting previously unselected package r-cran-htmltools.
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251s Selecting previously unselected package r-cran-jquerylib.
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251s Selecting previously unselected package r-cran-jsonlite.
252s Preparing to unpack .../079-r-cran-jsonlite_1.8.8+dfsg-1_armhf.deb ...
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252s Selecting previously unselected package r-cran-glue.
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252s Selecting previously unselected package r-cran-memoise.
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252s Selecting previously unselected package r-cran-mime.
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252s Selecting previously unselected package r-cran-fs.
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252s Selecting previously unselected package r-cran-r6.
252s Preparing to unpack .../086-r-cran-r6_2.5.1-1_all.deb ...
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252s Selecting previously unselected package r-cran-rappdirs.
252s Preparing to unpack .../087-r-cran-rappdirs_0.3.3-1_armhf.deb ...
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252s Selecting previously unselected package r-cran-sass.
253s Preparing to unpack .../088-r-cran-sass_0.4.8+dfsg-1_armhf.deb ...
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256s 
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256s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ...
256s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
256s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
256s Setting up libthai0:armhf (0.1.29-2) ...
256s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
256s Setting up pandoc (3.1.3+ds-2) ...
256s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
256s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
256s Setting up libsm6:armhf (2:1.2.3-1build2) ...
256s Setting up fontconfig (2.15.0-1.1ubuntu1) ...
258s Regenerating fonts cache... done.
258s Setting up libxft2:armhf (2.3.6-1) ...
258s Setting up libtk8.6:armhf (8.6.13-2) ...
258s Setting up libpango-1.0-0:armhf (1.52.1+ds-1) ...
258s Setting up libcairo2:armhf (1.18.0-1ubuntu1) ...
258s Setting up libxt6t64:armhf (1:1.2.1-1.2) ...
258s Setting up libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
258s Setting up libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
258s Setting up r-base-core (4.3.3-2build1) ...
259s 
259s Creating config file /etc/R/Renviron with new version
259s Setting up r-cran-crayon (1.5.2-1) ...
259s Setting up r-cran-sourcetools (0.1.7-1-1) ...
259s Setting up r-cran-commonmark (1.9.1-1) ...
259s Setting up r-cran-r6 (2.5.1-1) ...
259s Setting up r-cran-pkgkitten (0.2.3-1) ...
259s Setting up r-cran-magrittr (2.0.3-1) ...
259s Setting up r-cran-rappdirs (0.3.3-1) ...
259s Setting up r-cran-littler (0.3.19-1) ...
259s Setting up r-cran-fs (1.6.3+dfsg-1build1) ...
259s Setting up r-cran-rcpp (1.0.12-1) ...
259s Setting up r-cran-diffobj (0.3.5-1) ...
259s Setting up r-cran-rlang (1.1.3-1) ...
259s Setting up littler (0.3.19-1) ...
259s Setting up r-cran-xfun (0.41+dfsg-1) ...
259s Setting up r-cran-withr (3.0.0+dfsg-1) ...
259s Setting up r-cran-mime (0.12-1) ...
259s Setting up r-cran-base64enc (0.1-3-3) ...
259s Setting up r-cran-digest (0.6.34-1) ...
259s Setting up r-cran-yaml (2.3.8-1) ...
259s Setting up r-cran-evaluate (0.23-1) ...
259s Setting up r-cran-highr (0.10+dfsg-1) ...
259s Setting up r-cran-glue (1.7.0-1) ...
259s Setting up r-cran-xtable (1:1.8-4-2) ...
259s Setting up r-cran-cli (3.6.2-1) ...
259s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
259s Setting up r-cran-fastmap (1.1.1-1) ...
259s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
259s Setting up r-cran-stringi (1.8.3-1) ...
259s Setting up r-cran-later (1.3.2+dfsg-1) ...
259s Setting up r-cran-tinytex (0.49-1) ...
259s Setting up r-cran-knitr (1.45+dfsg-1) ...
259s Setting up r-cran-cachem (1.0.8-1) ...
259s Setting up r-cran-unitizer (1.4.20-1) ...
259s Setting up r-cran-vctrs (0.6.5-1) ...
259s Setting up r-cran-ellipsis (0.3.2-2) ...
259s Setting up r-cran-stringr (1.5.1-1) ...
259s Setting up r-cran-memoise (2.0.1-1) ...
259s Setting up r-cran-promises (1.2.1+dfsg-1) ...
259s Setting up r-cran-htmltools (0.5.7-1) ...
259s Setting up r-cran-sass (0.4.8+dfsg-1) ...
259s Setting up r-cran-httpuv (1.6.14+dfsg-1build1) ...
259s Setting up r-cran-fontawesome (0.5.2-1) ...
259s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
259s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
259s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
259s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
259s Setting up autopkgtest-satdep (0) ...
259s Processing triggers for man-db (2.12.0-3build4) ...
260s Processing triggers for install-info (7.1-3build1) ...
260s Processing triggers for libc-bin (2.39-0ubuntu6) ...
282s (Reading database ... 72299 files and directories currently installed.)
282s Removing autopkgtest-satdep (0) ...
287s autopkgtest [02:12:06]: test run-unit-test: [-----------------------
289s Begin testing t-browser.R
289s 
289s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
289s Copyright (C) 2024 The R Foundation for Statistical Computing
289s Platform: arm-unknown-linux-gnueabihf (32-bit)
289s 
289s R is free software and comes with ABSOLUTELY NO WARRANTY.
289s You are welcome to redistribute it under certain conditions.
289s Type 'license()' or 'licence()' for distribution details.
289s 
289s R is a collaborative project with many contributors.
289s Type 'contributors()' for more information and
289s 'citation()' on how to cite R or R packages in publications.
289s 
289s Type 'demo()' for some demos, 'help()' for on-line help, or
289s 'help.start()' for an HTML browser interface to help.
289s Type 'q()' to quit R.
289s 
289s > source(file.path("_helper", "init.R"))
290s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("refobjs")
290s > 
290s > options(unitizer.color = FALSE)
290s > zero.env <- parent.env(.GlobalEnv)
290s > obj.item <- new("unitizerItem", call = quote(1 + 1), env = new.env())
290s > obj.item@data@value <- list(2)
290s > obj.item@data@output <- c("two", "dos", "due")
290s > obj.item@data@conditions <- new("conditionList", .items = list(simpleError("hello"),
290s +     simpleWarning("What a warning")))
290s > obj.item@data@message <- vapply(unitizer:::as.list(obj.item@data@conditions),
290s +     conditionMessage, character(1L))
290s > obj.item@data@aborted <- TRUE
290s > 
290s > # - "unitizerItem accessor functions work" -------------------------------------
290s > 
290s > obj.item$value
290s [1] 2
290s > obj.item$output
290s [1] "two" "dos" "due"
290s > obj.item$conditions
290s Condition list with 2 conditions:
290s 1. Error: hello
290s 2. Warning: What a warning
290s > 
290s > # Create a bunch of expressions for testing
290s > 
290s > exps1 <- expression(
290s +   library(stats),
290s +   unitizer_sect("Section 1", {
290s +     1 + 1
290s +     runif(20)
290s +     stop("woohoo")
290s +     "I'll be removed"
290s +     "I too will be removed"
290s +   }),
290s +   unitizer_sect("Section 2", {
290s +     "I three will be removed"
290s +     sample(20)
290s + }))
290s > exps2 <- expression(
290s +   library(stats),
290s +   unitizer_sect("Section 1", {
290s +     1 + 1
290s +     runif(20)
290s +     stop("woohoo")
290s +     var <- 200
290s +     matrix(1:9, 3)
290s +     }),
290s +   unitizer_sect("Section 2", {
290s +     1 + 20
290s +     var1 <- list(1, 2, 3)
290s +     sample(20)
290s +     matrix(1:9, ncol = 3)
290s +     lm(x ~ y, data.frame(x = 1:10, y = c(5, 3, 3, 2, 1, 8, 2,
290s +         1, 4, 1.5)))
290s + }))
290s > my.unitizer <- new("unitizer", id = 1, zero.env = zero.env)
290s > coi(my.unitizer <- my.unitizer + exps1)
290s > my.unitizer2 <- new("unitizer", id = 2, zero.env = zero.env)
290s > # make previous items into reference items
290s > my.unitizer2 <- my.unitizer2 + my.unitizer@items.new
290s > # now add back items to compare
290s > coi(my.unitizer2 <- my.unitizer2 + exps2)
290s > unitizer.prepped <- unitizer:::browsePrep(my.unitizer2, mode = "unitize")
290s > 
290s > # NOTE: for some reason, changes in between revisions d9619db and a46e941
290s > # should have caused the tests to fail, but didn't.  We did not notice
290s > # failures until we ran tests quite a bit later at ca9f540364.  Not sure why
290s > # this happened.  The failures were due to the order of tests changing because
290s > # we moved ignored tests to be in the same sub-section as the subsequent non-
290s > # ignored tests
290s > 
290s > # - "Can convert to data.frame" ------------------------------------------------
290s > 
290s > all.equal(unitizer:::as.data.frame(unitizer.prepped), rds("browse_df1"))
290s [1] TRUE
290s > 
290s > # - "unitizerBrowse correctly processes unitizer for display" ------------------
290s > 
290s > # force all tests to be reviewed so they will be shown
290s > unitizer.prepped@mapping@reviewed <-
290s +   rep(TRUE, length(unitizer.prepped@mapping@reviewed))
290s > unitizer.prepped@mapping@review.val <-
290s +   rep("Y", length(unitizer.prepped@mapping@reviewed))
290s > all.equal(as.character(unitizer.prepped, 60), rds("browse_aschar1"))
290s [1] TRUE
290s > 
290s > # Alternating tests
290s > unitizer.prepped@mapping@reviewed <-
290s +   as.logical(seq(length(unitizer.prepped@mapping@reviewed))%%2)
290s > all.equal(as.character(unitizer.prepped, 60), rds("browse_aschar2"))
290s [1] TRUE
290s > 
290s > # Errors / warnings
290s > try(as.character(unitizer.prepped, -1))           # positive
290s Error in .local(x, ...) : 
290s   Argument `width` must be a positive scalar numeric.
290s > prep.narrow <- as.character(unitizer.prepped, 5)  # too small
290s Warning in .local(x, ...) :
290s   Selected display width too small, will be ignored
290s > 
290s > all.equal(prep.narrow, rds("browse_ascharnarrow"))
290s [1] TRUE
290s > 
290s > # Colors work (should be last in this section) since the reference @global
290s > 
290s > unitizer.prepped@global$unitizer.opts[["unitizer.color"]] <- TRUE
290s > old.opt <- options(crayon.enabled = TRUE)
290s > prep.color <- as.character(unitizer.prepped, 60)
290s > all.equal(prep.color, rds("browse_aschar3"))
290s [1] TRUE
290s > unitizer.prepped@global$unitizer.opts[["unitizer.color"]] <- FALSE
290s > options(old.opt)
290s > 
290s > # - "processInput generates Correct Item Structure" ----------------------------
290s > 
290s > # Here we just test that the calls of each item are what we expect, making
290s > # sure that different behavior for Y or N depending on sub-section type is
290s > # observed correctly (e.g. a Y for new test means keep it, where as for
290s > # removed test means don't keep it)
290s > # For debugging:
290s > # cbind(substr(unitizer:::deparseCalls(unitizer.prepped), 1, 15), as.character(unitizer.prepped@mapping@review.type), unitizer.prepped@mapping@review.val, unitizer.prepped@mapping@reviewed)
290s > # cat(deparse(width=500,
290s > #   lapply(
290s > #     unitizer:::as.list(unitizer:::processInput(unitizer.prepped)),
290s > #     function(x) call("quote", slot(x, "call")))
290s > # ) )
290s > unitizer.prepped@mapping@reviewed <-
290s +   rep(TRUE, length(unitizer.prepped@mapping@reviewed))
290s > unitizer.prepped@mapping@review.val <-
290s +   rep("Y", length(unitizer.prepped@mapping@reviewed))
290s > 
290s > # Assume user accepted all tests
290s > 
290s > lapply(
290s +   unitizer:::as.list(unitizer:::processInput(unitizer.prepped)), slot, "call"
290s + )
290s [[1]]
290s library(stats)
290s 
290s [[2]]
290s runif(20)
290s 
290s [[3]]
290s var <- 200
290s 
290s [[4]]
290s matrix(1:9, 3)
290s 
290s [[5]]
290s 1 + 1
290s 
290s [[6]]
290s stop("woohoo")
290s 
290s [[7]]
290s var1 <- list(1, 2, 3)
290s 
290s [[8]]
290s sample(20)
290s 
290s [[9]]
290s 1 + 20
290s 
290s [[10]]
290s matrix(1:9, ncol = 3)
290s 
290s [[11]]
290s lm(x ~ y, data.frame(x = 1:10, y = c(5, 3, 3, 2, 1, 8, 2, 1, 
290s     4, 1.5)))
290s 
290s > # Assume user accepted all but 1, 4, 6 and 11, note it isn't completely
290s > # obvious what should be kept since an N for anything but a new and passed
290s > # test will result in some object remaining in the list (typically the
290s > # reference copy thereof)
290s > unitizer.prepped@mapping@review.val[] <- "N"
290s > unitizer.prepped@mapping@review.val[c(2, 6, 8, 12)] <- "Y"
290s > lapply(
290s +   unitizer:::as.list(unitizer:::processInput(unitizer.prepped)), slot, "call"
290s + )
290s [[1]]
290s runif(20)
290s 
290s [[2]]
290s stop("woohoo")
290s 
290s [[3]]
290s [1] "I'll be removed"
290s 
290s [[4]]
290s sample(20)
290s 
290s [[5]]
290s matrix(1:9, ncol = 3)
290s 
290s [[6]]
290s [1] "I three will be removed"
290s 
290s > # - "unitizerBrowse subsetting works" ------------------------------------------
290s > 
290s > # note single bracket subsetting for `unitizerBrowse` overrides the `unitizerList`
290s > # subsetting
290s > unitizer:::deparseCalls(unitizer:::extractItems(unitizer.prepped[c(4, 8, 10)]))
290s [1] "matrix(1:9, 3)"            "\"I too will be removed\""
290s [3] "sample(20)"               
290s > unitizer:::deparseCalls(unitizer:::extractItems(unitizer.prepped[c(2, 3, 11)]))
290s [1] "runif(20)"  "var <- 200" "1 + 20"    
290s > 
290s > # - "Reference section mapping works" ------------------------------------------
290s > 
290s > # Copy over just two sections
290s > my.unitizer3 <- new("unitizer", id = 3, zero.env = zero.env) +
290s +     my.unitizer2@items.new[-(2:6)]
290s > # Exclude section two tests
290s > # sections should copy over
290s > my.unitizer3 <- unitizer:::refSections(my.unitizer3, my.unitizer2)
290s > # just copy over 1st and 3rd sections
290s > identical(my.unitizer3@sections.ref, my.unitizer2@sections[-2])
290s [1] TRUE
290s > my.unitizer3@section.ref.map
290s [1] 1 2 2 2 2 2
290s > 
290s > # Make sure "removed" sections are NA when kept
290s > unitizer.prepped@mapping@reviewed <-
290s +   rep(TRUE, length(unitizer.prepped@mapping@reviewed))
290s > # don't delete removed
290s > unitizer.prepped@mapping@review.val <-
290s +   ifelse(unitizer.prepped@mapping@review.type %in% c("Removed"), "N", "Y")
290s > items.processed <- unitizer:::processInput(unitizer.prepped)
290s > vapply(unitizer:::as.list(items.processed), slot, 1L, "section.id")
290s  [1]  1  2  2  2  2  2 NA NA  3  3  3  3  3 NA
290s > 
290s > # Now try to re-establish sections with removed tests
290s > my.unitizer4 <-
290s +   new("unitizer", id = 4, zero.env = zero.env) + items.processed
290s > # sections should copy over
290s > my.unitizer4 <- unitizer:::refSections(my.unitizer4, my.unitizer2)
290s > is(my.unitizer4@sections.ref[[4L]], "unitizerSectionNA")
290s [1] TRUE
290s > my.unitizer4@section.ref.map
290s  [1] 1 2 2 2 2 2 4 4 3 3 3 3 3 4
290s > 
290s > # - "Item Extraction" ----------------------------------------------------------
290s > 
290s > items <- unitizer:::extractItems(unitizer.prepped)
290s > item.calls <- vapply(
290s +   unitizer:::as.list(items),
290s +   function(x)
290s +     paste0(deparse(x@call, width.cutoff = 500), collapse = ""), character(1L)
290s + )
290s > item.types <- vapply(unitizer:::as.list(items), slot, FALSE, "reference")
290s > item.ids <- vapply(unitizer:::as.list(items), slot, 1L, "id")
290s > item.df <- data.frame(item.calls, item.types, item.ids, stringsAsFactors = FALSE)
290s > 
290s > all.equal(item.df[order(item.types, item.ids),], rds("browse_itemord"))
290s [1] TRUE
290s > 
290s PASS
290s Begin testing t-capture.R
291s 
291s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
291s Copyright (C) 2024 The R Foundation for Statistical Computing
291s Platform: arm-unknown-linux-gnueabihf (32-bit)
291s 
291s R is free software and comes with ABSOLUTELY NO WARRANTY.
291s You are welcome to redistribute it under certain conditions.
291s Type 'license()' or 'licence()' for distribution details.
291s 
291s R is a collaborative project with many contributors.
291s Type 'contributors()' for more information and
291s 'citation()' on how to cite R or R packages in publications.
291s 
291s Type 'demo()' for some demos, 'help()' for on-line help, or
291s 'help.start()' for an HTML browser interface to help.
291s Type 'q()' to quit R.
291s 
291s > source(file.path("_helper", "init.R"))
291s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("capture")
291s > 
291s > # # Messing around trying to understand seek...
291s > # f <- tempfile()
291s > # con <- file(f, "w+b")
291s > # writeChar(paste(letters, LETTERS, collapse=" "), con)
291s > # readChar(con, 20)
291s > # pos <- seek(con, origin="current")
291s > # seek(con, pos, rw="write")
291s > # writeChar("xxxxxxxxx", con)
291s > # readChar(con, 3)
291s > # pos <- seek(con, origin="current")
291s > # seek(con, pos, rw="write")
291s > # writeChar("yyyyy", con)
291s > # close(con)
291s > # readLines(f)
291s > # unlink(f)
291s > 
291s > # - "get_capture" --------------------------------------------------------------
291s > 
291s > old.max <- options(unitizer.max.capture.chars = 100L)
291s > cons <- new("unitizerCaptCons")
291s > base.char <- paste(rep(letters, 10), collapse = " ")
291s > writeChar(base.char, cons@out.c)
291s > 
291s > # Error "Argument `chrs.max`"
291s > try(unitizer:::get_text_capture(cons, "output", TRUE, chrs.max = "howdy"))
291s Error in unitizer:::get_text_capture(cons, "output", TRUE, chrs.max = "howdy") : 
291s   Argument `chrs.max` must be integer(1L) and greater than 100L; using 200000L for nowTRUE
291s > # Warn max capt
291s > cpt0 <- unitizer:::get_text_capture(cons, "output", TRUE)
291s Warning in get_text(slot(cons, if (type == "message") "err.c" else "out.c")) :
291s   Reached maximum text capture characters 100; see `getOption("unitizer.max.capture.chars")`
291s > nchar(cpt0)
291s [1] 100
291s > base.char.2 <- paste(rev(rep(letters, 10)), collapse = " ")
291s > writeChar(base.char.2, cons@err.c)
291s > sink(cons@err.c, type = "message")
291s > 
291s > cpt0.err <- unitizer:::get_text_capture(cons, "message", FALSE)
291s Warning in get_text(slot(cons, if (type == "message") "err.c" else "out.c")) :
291s   Reached maximum text capture characters 100; see `getOption("unitizer.max.capture.chars")`
291s > sink(type = "message")
291s > all.equal(cpt0.err, substr(base.char.2, 1, 100))
291s [1] TRUE
291s > 
291s > ## for some reason this test stopped working; not sure why, need to look into
291s > ## it; seemingly it messes up the pointer for the next read
291s > # writeChar("xxxxxx", cons@out.c)
291s > # cpt2 <- unitizer:::get_text_capture(cons, "output", TRUE)
291s > # expect_equal("xxxxxx", cpt2)
291s > writeChar(paste0(rep("yyyyyyy", 20L), collapse = ""), cons@out.c)
291s > # warn max capt
291s > cpt1 <- unitizer:::get_text_capture(cons, "output", TRUE)
291s Warning in get_text(slot(cons, if (type == "message") "err.c" else "out.c")) :
291s   Reached maximum text capture characters 100; see `getOption("unitizer.max.capture.chars")`
291s > all.equal(cpt1, paste0(rep("y", 100), collapse = ""))
291s [1] TRUE
291s > unitizer:::close_and_clear(cons)
291s > options(old.max)
291s > 
291s > # - "get_text" -----------------------------------------------------------------
291s > 
291s > old.max <- options(unitizer.max.capture.chars = 100L)
291s > f <- tempfile()
291s > con <- file(f, "w+b")
291s > base.char <- paste(letters, collapse = " ")
291s > sink(con, type = "message")
291s > cat(base.char, file = stderr())
291s > # this needs to temporarily switch the sink to be able to issue the warning
291s > # Warn: "Reached maximum"
291s > unitizer:::get_text(con, 10)
291s Warning in unitizer:::get_text(con, 10) :
291s   Reached maximum text capture characters 10; see `getOption("unitizer.max.capture.chars")`
291s [1] "a b c d e "
291s > # should still be to writing to our file, 10 chars in
291s > cat("boogiewoogy", file = stderr())
291s > sink(type = "message")
291s > suppressWarnings(readLines(f))  # incomplete final line...
291s [1] "a b c d e boogiewoogy l m n o p q r s t u v w x y z"
291s > 
291s > options(old.max)
291s > unlink(f)
291s > 
291s > # - "connection capture works" -------------------------------------------------
291s > 
291s > out.num <- as.integer(stdout())
291s > err.num <- as.integer(stderr())
291s > err.con <- getConnection(sink.number(type = "message"))
291s > cons <- new("unitizerCaptCons")
291s > cons <- unitizer:::set_capture(cons)
291s > cat("hello there\n")
291s > cat("goodbye there\n", file = stderr())
291s > capt <- unitizer:::get_capture(cons)
291s > cons <- unitizer:::unsink_cons(cons)
291s > capt
291s $output
291s [1] "hello there\n"
291s 
291s $message
291s [1] "goodbye there\n"
291s 
291s > # expect_identical(as.integer(stdout()), out.num)
291s > identical(as.integer(stdout()), out.num)
291s [1] TRUE
291s > identical(as.integer(stderr()), err.num)
291s [1] TRUE
291s > unitizer:::close_and_clear(cons)
291s > 
291s > # Now, here we add an extra stdout sink. In both cases unsink_cons will not
291s > # touch the sinks since we're not in an expected state, leaving
291s > # close_and_clear to cleanup
291s > err.con <- getConnection(sink.number(type = "message"))
291s > cons <- new("unitizerCaptCons")
291s > cons <- unitizer:::set_capture(cons)
291s > cat("there hello\n")
291s > # message does not work with testthat
291s > cat("there goodbye\n", file = stderr())
291s > f1 <- tempfile()
291s > f2 <- tempfile()
291s > c2 <- file(f2, "w")
291s > sink(f1)
291s > sink(c2, type = "message")
291s > cat("12 there hello\n")
291s > # message does not work with testthat
291s > cat("12 there goodbye\n", file = stderr())
291s > capt <- unitizer:::get_capture(cons)
291s > cons <- unitizer:::unsink_cons(cons)
291s > unitizer:::close_and_clear(cons)
291s > attr(cons@out.c, "waive")
291s [1] TRUE
291s > attr(cons@err.c, "waive")
291s [1] TRUE
291s > capt
291s $output
291s [1] "there hello\n"
291s 
291s $message
291s [1] "there goodbye\n"
291s 
291s > readLines(f1)
291s [1] "12 there hello"
291s > readLines(f2)
291s [1] "12 there goodbye"
291s > close(c2)
291s > unlink(c(f1, f2))
291s > 
291s > # Same, but this time close the sinks properly, so the connections should not
291s > # be waived
291s > err.con <- getConnection(sink.number(type = "message"))
291s > cons <- new("unitizerCaptCons")
291s > cons <- unitizer:::set_capture(cons)
291s > cat("there hello\n")
291s > # message does not work with testthat
291s > cat("there goodbye\n", file = stderr())
291s > f1 <- tempfile()
291s > f2 <- tempfile()
291s > c2 <- file(f2, "w")
291s > sink(f1)
291s > sink(c2, type = "message")
291s > cat("12 there hello\n")
291s > # message does not work with testthat
291s > cat("12 there goodbye\n", file = stderr())
291s > sink()
291s > sink(cons@err.c, type = "message")
291s > capt <- unitizer:::get_capture(cons)
291s > cons <- unitizer:::unsink_cons(cons)
291s > attr(cons@out.c, "waive")  # NULL
291s NULL
291s > attr(cons@err.c, "waive")  # NULL
291s NULL
291s > capt
291s $output
291s [1] "there hello\n"
291s 
291s $message
291s [1] "there goodbye\n"
291s 
291s > unitizer:::close_and_clear(cons)
291s > readLines(f1)
291s [1] "12 there hello"
291s > readLines(f2)
291s [1] "12 there goodbye"
291s > close(c2)
291s > unlink(c(f1, f2))
291s > # Try to mess up sink counter by replacing the real sink with a fake sink
291s > # should lead to a waived connection
291s > cons <- new("unitizerCaptCons")
291s > cons <- unitizer:::set_capture(cons)
291s > f1 <- tempfile()
291s > sink()
291s > sink(f1)
291s > capt <- unitizer:::get_capture(cons)
291s > cons <- unitizer:::unsink_cons(cons)
291s > attr(cons@out.c, "waive")
291s > attr(cons@err.c, "waive")
291s > capt
291s > # Try to fix so that we don't get a full stack release error
291s > sink()
291s > sink(cons@out.c)
291s > unitizer:::close_and_clear(cons)
291s > unlink(f1)
291s > # helper function
291s > f1 <- tempfile()
291s > f2 <- tempfile()
291s > c1 <- file(f1, "w+b")
291s > c2 <- file(f2, "w+b")
291s > sink(c2)
291s > unitizer:::is_stdout_sink(f1)
291s > sink()
291s > sink(c1)
291s > unitizer:::is_stdout_sink(f1)
291s > sink()
291s > close(c1)
291s > close(c2)
291s > unlink(c(f1, f2))
291s > 
291s > # - "connection breaking tests" ------------------------------------------------
291s > 
291s > # # These tests cannot be run as they blow away the entire sink stack which can
291s > # # mess up any testing done under capture
291s > #
291s > # test_that("connection breaking tests", {
291s > #   # Test the more pernicious error where we substitute the stdout sink
291s > #
291s > #   cons <- new("unitizerCaptCons")
291s > #   cons <- unitizer:::set_capture(cons)
291s > #   cat("woohoo\n")
291s > #   cat("yohooo\n", file=stderr())
291s > #   f1 <- tempfile()
291s > #   sink()
291s > #   sink(f1)
291s > #   capt <- unitizer:::get_capture(cons)
291s > #   cons <- unitizer:::unsink_cons(cons)
291s > #   sink()
291s > #   unlink(f1)
291s > #   expect_true(attr(cons@out.c, "waive"))
291s > #   expect_null(attr(cons@err.c, "waive"))
291s > #   expect_identical(
291s > #     capt, list(output = "woohoo\n", message = "yohooo\n")
291s > #   )
291s > #   expect_identical(
291s > #     unitizer:::close_and_clear(cons),
291s > #     structure(c(FALSE, TRUE), .Names = c("output", "message"))
291s > #   )
291s > # })
291s > 
291s > # - "close_and_clear" ----------------------------------------------------------
291s > 
291s > # need some careful handling to make sure we don't mess up the testthat's
291s > # sinking (legacy behavior)
291s > cons <- new("unitizerCaptCons")
291s > err.con <- cons@stderr.con
291s > on.exit(sink(err.con, type = "message"))
291s > # intended to cause an error
291s > cons@stderr.con <- list()
291s > # msg:  "Unable to restore original "
291s > cons.txt <- capture.output(status <- unitizer:::close_and_clear(cons), 
291s +     type = "message")
291s | Unable to restore original message sink, setting back to normal stderr
291s 
291s > any(grepl("connection", cons.txt))
291s [1] TRUE
291s > sink(err.con, type = "message")
291s > status["message"]
291s message 
291s   FALSE 
291s > 
291s > # - "eval with capt" -----------------------------------------------------------
291s > 
291s > suppressWarnings(glob <- unitizer:::unitizerGlobal$new())
291s > all.equal(
291s +   (capt <- unitizer:::eval_with_capture(quote(1 + 1), global = glob))[1:8],
291s +   rds(100)
291s + )
291s [1] TRUE
291s > is(capt[[9]], "unitizerCaptCons")
291s [1] TRUE
291s > all.equal(
291s +   (
291s +     capt <- unitizer:::eval_with_capture(
291s +       cat("wow\n", file = stderr()), global = glob)
291s +   )[1:8],
291s +   rds(200)
291s + )
291s [1] TRUE
291s > is(capt[[9]], "unitizerCaptCons")
291s [1] TRUE
291s > 
291s PASS
291s Begin testing t-change.R
291s 
291s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
291s Copyright (C) 2024 The R Foundation for Statistical Computing
291s Platform: arm-unknown-linux-gnueabihf (32-bit)
291s 
291s R is free software and comes with ABSOLUTELY NO WARRANTY.
291s You are welcome to redistribute it under certain conditions.
291s Type 'license()' or 'licence()' for distribution details.
291s 
291s R is a collaborative project with many contributors.
291s Type 'contributors()' for more information and
291s 'citation()' on how to cite R or R packages in publications.
291s 
291s Type 'demo()' for some demos, 'help()' for on-line help, or
291s 'help.start()' for an HTML browser interface to help.
291s Type 'q()' to quit R.
291s 
291s > source(file.path("_helper", "init.R"))
292s > 
292s > # - "Construction works" -------------------------------------------------------
292s > 
292s > # invalid slot
292s > try(new("unitizerChanges", removed = 1:3))
292s Error in validObject(.Object) : 
292s   invalid class "unitizerChanges" object: slot `@`removed must be of length 2
292s > # invalid/ got character
292s > try(new("unitizerChanges", failed = letters[1:2]))
292s Error in validObject(.Object) : 
292s   invalid class "unitizerChanges" object: invalid object for slot "failed" in class "unitizerChanges": got class "character", should be or extend class "integer"
292s > 
292s > # - "Output as expected" -------------------------------------------------------
292s > 
292s > my.changes <- new("unitizerChanges", failed = c(1L, 10L), new = c(1L, 
292s +     5L), removed = c(2L, 4L), corrupted = c(3L, 8L))
292s > show(my.changes)
292s - Replacing 1 out of 10 failed tests
292s - Adding 1 out of 5 new tests
292s - Removing 2 out of 4 removed tests
292s - Replacing 3 out of 8 tests with errors
292s > 
292s > # - "Length Works" -------------------------------------------------------------
292s > 
292s > length(my.changes) # 7
292s [1] 7
292s > 
292s PASS
292s Begin testing t-demo.R
292s 
292s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
292s Copyright (C) 2024 The R Foundation for Statistical Computing
292s Platform: arm-unknown-linux-gnueabihf (32-bit)
292s 
292s R is free software and comes with ABSOLUTELY NO WARRANTY.
292s You are welcome to redistribute it under certain conditions.
292s Type 'license()' or 'licence()' for distribution details.
292s 
292s R is a collaborative project with many contributors.
292s Type 'contributors()' for more information and
292s 'citation()' on how to cite R or R packages in publications.
292s 
292s Type 'demo()' for some demos, 'help()' for on-line help, or
292s 'help.start()' for an HTML browser interface to help.
292s Type 'q()' to quit R.
292s 
292s > source(file.path("aammrtf", "mock.R"))
292s > source(file.path("_helper", "init.R"))
292s > source(file.path("_helper", "pkgs.R"))
292s Install Packages
295s Setup Demos
295s > 
295s > # Mostly makes sure the demo steps work, but since it is a convenient way of
295s > # generating a unitizer with actual errors and so forth, we use it to test a few
295s > # other things as well in the context of those unitizers
295s > 
295s > # - "in_pkg" -------------------------------------------------------------------
295s > 
295s > base.dir <- file.path(FLM, "tests", "extra")
295s > in.pkg.file <- file.path(base.dir, "inpkg.R")
295s > 
295s > unitizer:::read_line_set_vals(c("Q"))
295s > txt1 <- unitizer:::capture_output(unitize(in.pkg.file, interactive.mode = TRUE))
297s > # `sub` needed due to inconsistencies in R 3.4 and 3.3 for top level error
297s > # messages
297s > txt1$message <- sub("^Error.*:", "", txt1$message)
297s > txt1
297s - Output -----------------------------------------------------------------------
297s 
297s 
297s +------------------------------------------------------------------------------+
297s | unitizer for: extra/inpkg.R                                                  |
297s +------------------------------------------------------------------------------+
297s 
297s              Pass Fail  New
297s  <untitled>     -    -    1
297s ...........................
297s                 -    -    1
297s 
297s - New --------------------------------------------------------------------------
297s 
297s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
297s | [R]erun, [Q]uit, [H]elp)?
297s 
297s # should fail normally, but return TRUE if run in fastlm
297s 
297s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
297s > hidden_fun()
297s 
297s unitizer> Q
297s 
297s | unitizer unchanged.
297s 
297s - Message ----------------------------------------------------------------------
297s 
297s  could not find function "hidden_fun"
297s | No changes recorded.
297s > unitizer:::read_line_set_vals(c("Q"))
297s > unitize(in.pkg.file, state = in_pkg(), interactive.mode = TRUE)
297s 
297s +------------------------------------------------------------------------------+
297s | unitizer for: extra/inpkg.R                                                  |
297s +------------------------------------------------------------------------------+
297s 
297s              Pass Fail  New
297s  <untitled>     -    -    1
297s ...........................
297s                 -    -    1
297s 
297s - New --------------------------------------------------------------------------
297s 
297s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
297s | [R]erun, [Q]uit, [H]elp)?
297s 
297s # should fail normally, but return TRUE if run in fastlm
297s 
297s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
297s > hidden_fun()
297s [1] TRUE
297s 
297s unitizer> Q
297s 
297s | No changes recorded.
297s | unitizer unchanged.
297s 
297s > unitizer:::read_line_set_vals(c("Q"))
297s > try(unitize(in.pkg.file, state = in_pkg("ASDFASDFA"), interactive.mode = TRUE))
297s 
297s Error in loadNamespace(name) : there is no package called 'ASDFASDFA'
297s Error in in_pkg_to_env(x.raw@par.env, test.files) : 
297s   Unable to load "ASDFASDFA" namespace to use as parent environment; see `?
297s unitizerState` for instructions on how to specify a package namespace as a 
297s parent environment for tests.
297s Error in as.state(state, test.files) : 
297s   Unable to convert `par.env` value to a namespace environment
297s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
297s   Argument `state` could not be evaluated.
297s > 
297s > # - "copy fastlm dir works" ----------------------------------------------------
297s > 
297s > sort(tolower(list.files(".")))
297s [1] "description"   "man"           "namespace"     "r"            
297s [5] "tests"         "utzflm.rcheck"
297s > readLines(file.path(".", "DESCRIPTION"))[[5L]]  # v0.1.0
297s [1] "Version: 0.1.0"
297s > update_fastlm(".", version = "0.1.1")
297s > readLines(file.path(".", "DESCRIPTION"))[[5L]]
297s [1] "Version: 0.1.1"
297s > update_fastlm(".", version = "0.1.2")
297s > readLines(file.path(".", "DESCRIPTION"))[[5L]]
297s [1] "Version: 0.1.2"
297s > 
297s > # - "show_file" ----------------------------------------------------------------
297s > 
297s > f <- tempfile()
297s > cat("this is a\ntest code\nfile\n", file = f)
297s > file.show <- capture.output(show_file(f))
297s > file.show[[1L]]
297s [1] "+---------------+"
297s > start.file <- grep("+---+-----------+", file.show, fixed = TRUE)
297s > length(start.file)  # 2
297s [1] 2
297s > writeLines(file.show[start.file[[1L]]:start.file[[2L]]])
297s +---+-----------+
297s | 1 | this is a |
297s | 2 | test code |
297s | 3 | file      |
297s +---+-----------+
297s > unlink(f)
297s > 
297s > # Run actual demo bits; note we want to force `interactive.mode=TRUE` so that
297s > # `read_line_vals` values are used as user input; note that until we fix
297s > # / rationalize how sinking behaves within unitizer when the standard streams
297s > # come in sunk, we won't be able to fully test everything, since for example
297s > # the display of the captured stdout just won't happen.
297s > 
297s > # - "demo create worked" -------------------------------------------------------
297s > 
297s > # In tests, initial version of package should be 0.1.0; the test store
297s > # does not exist so it doesn't get overwritten with subsequent updates
297s > # Note the initial install happens in the test running script
297s > 
297s > unitizer:::update_fastlm(".", version = "0.1.0")
297s > inst_pak(".")
298s > unitizer:::read_line_set_vals(c("Y", "Y", "Y", "Y", "Y"))
298s > untz <- unitize(FLM.TEST.FILE, interactive.mode = TRUE)
298s 
298s +------------------------------------------------------------------------------+
298s | unitizer for: unitizer/fastlm1.R                                             |
298s +------------------------------------------------------------------------------+
298s 
298s              Pass Fail  New
298s  <untitled>     -    -    4
298s ...........................
298s                 -    -    4
298s 
298s - New --------------------------------------------------------------------------
298s 
298s | The 4 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
298s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
298s 
298s # Assignments and calls to `library` are not considered tests by
298s # `unitizer` so you will not need to review them
298s 
298s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
298s > dat <- data.frame(x = 1:100, y = (1:100)^2)
298s > res <- fastlm(dat$x, dat$y)
298s 
298s # The `unitizer>` prompt is like the standard R prompt. You may
298s # enter expressions such as `lm(y ~ x, dat)$coefficients`, or
298s # `str(res)`.
298s #
298s # Once you are done reviewing, you need to tell `unitizer` you
298s # accept the test by typing 'Y' at the prompt.  Enter 'H' for help.
298s 
298s > res
298s intercept     slope       rsq 
298s -1717.000   101.000     0.939 
298s attr(,"class")
298s [1] "fastlm"
298s 
298s unitizer> Y
298s 
298s # There are three more tests to review; accept them with 'Y'
298s 
298s > get_slope(res)
298s [1] 101
298s 
298s unitizer> Y
298s 
298s > get_rsq(res)
298s [1] 0.939
298s 
298s unitizer> Y
298s 
298s # This last test is expected to cause an error; press 'Y' to
298s # accept it so future checks can confirm the same error persists
298s 
298s > fastlm(1:100, 1:10)
298s Error in fastlm(1:100, 1:10) : 
298s   Arguments `x` and `y` must be the same length.
298s 
298s unitizer> Y
298s 
298s = Finalize Unitizer ============================================================
298s 
298s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
298s | - Adding 4 out of 4 new tests
298s 
298s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
298s 
298s unitizer> Y
298s 
298s | unitizer updated.
298s 
298s > is(untz, "unitizer_result")
298s [1] TRUE
298s > print(untz)
298s Test File: tests/unitizer/fastlm1.R
298s Store ID: tests/unitizer/fastlm1.unitizer
298s 
298s   id                           call ignored status user reviewed
298s 1  1 library(utzflm, lib.loc = g...       *    New    N    FALSE
298s 2  2 dat <- data.frame(x = 1:100...       *    New    N    FALSE
298s 3  3    res <- fastlm(dat$x, dat$y)       *    New    N    FALSE
298s 4  4                            res            New    Y     TRUE
298s 5  5                 get_slope(res)            New    Y     TRUE
298s 6  6                   get_rsq(res)            New    Y     TRUE
298s 7  7            fastlm(1:100, 1:10)            New    Y     TRUE
298s > # Re-running doesn't change unitizer
298s > untz2 <- unitize(FLM.TEST.FILE, interactive.mode = TRUE)
298s 
298s | 4/4 tests passed; nothing to review.
298s 
298s > print(untz2)
298s Test File: tests/unitizer/fastlm1.R
298s Store ID: tests/unitizer/fastlm1.unitizer
298s 
298s   id                           call ignored status user reviewed
298s 1  1 library(utzflm, lib.loc = g...       * Passed    Y    FALSE
298s 2  2 dat <- data.frame(x = 1:100...       * Passed    Y    FALSE
298s 3  3    res <- fastlm(dat$x, dat$y)       * Passed    Y    FALSE
298s 4  4                            res         Passed    Y    FALSE
298s 5  5                 get_slope(res)         Passed    Y    FALSE
298s 6  6                   get_rsq(res)         Passed    Y    FALSE
298s 7  7            fastlm(1:100, 1:10)         Passed    Y    FALSE
298s 
298s You chose NOT to save these changes to the unitizer store
298s > # Rejecting failed tests does not change unitizer
298s > update_fastlm(".", version = "0.1.1")
298s > inst_pak(".")
300s > 
300s > unitizer:::read_line_set_vals(c("N", "N", "Y"))
300s > unitizer:::capture_output(
300s +   untz3 <- unitize(FLM.TEST.FILE, interactive.mode = TRUE)
300s + )
300s > print(untz3)
300s Test File: tests/unitizer/fastlm1.R
300s Store ID: tests/unitizer/fastlm1.unitizer
300s 
300s   id                           call ignored status user reviewed
300s 1  1 library(utzflm, lib.loc = g...       * Failed    N    FALSE
300s 2  2 dat <- data.frame(x = 1:100...       * Failed    N    FALSE
300s 3  3    res <- fastlm(dat$x, dat$y)       * Failed    N    FALSE
300s 4  4                            res         Failed    N     TRUE
300s 5  5                 get_slope(res)         Failed    N     TRUE
300s 6  6                   get_rsq(res)         Passed    Y    FALSE
300s 7  7            fastlm(1:100, 1:10)         Passed    Y    FALSE
300s 
300s You chose NOT to save these changes to the unitizer store
300s > 
300s > # - "demo review" --------------------------------------------------------------
300s > 
300s > # review is always in interactive mode
300s > unitizer:::read_line_set_vals(c("5", "Q"))
300s > review(FLM.TEST.STORE)
300s 
300s +------------------------------------------------------------------------------+
300s | unitizer for: tests/unitizer/fastlm1.unitizer                                |
300s +------------------------------------------------------------------------------+
300s 
300s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .        -:-
300s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .        -:-
300s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .        -:-
300s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
300s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
300s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
300s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
300s 
300s | What test do you wish to review (input a test number, [U]nreviewed)?
300s 
300s unitizer> 5
300s - Passed -----------------------------------------------------------------------
300s 
300s | The 4 tests in this section passed. Keep tests in store ([Y]es, [N]o, [P]rev, 
300s | [B]rowse, [Q]uit, [H]elp)?
300s 
300s # There are three more tests to review; accept them with 'Y'
300s 
300s > get_slope(res)
300s [1] 101
300s 
300s unitizer> Q
300s 
300s | No changes recorded.
300s | unitizer unchanged.
300s 
300s > 
300s > # - "use.diff" -----------------------------------------------------------------
300s > 
300s > # Use this opportunity to make sure `use.diff=FALSE` works as intended
300s > unitizer:::read_line_set_vals("Q")
300s > unitize(FLM.TEST.FILE, interactive.mode = TRUE, use.diff = FALSE)
300s 
300s +------------------------------------------------------------------------------+
300s | unitizer for: unitizer/fastlm1.R                                             |
300s +------------------------------------------------------------------------------+
300s 
300s              Pass Fail
300s  <untitled>     2    2
300s ......................
300s                 2    2
300s 
300s - Failed -----------------------------------------------------------------------
300s 
300s | The 2 tests in this section failed because the new evaluations do not match 
300s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
300s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
300s 
300s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
300s > dat <- data.frame(x = 1:100, y = (1:100)^2)
300s > res <- fastlm(dat$x, dat$y)
300s 
300s # Our fast computations do not produce the same results as our
300s # original tests so they fail.  If you need more detail than the
300s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
300s #
300s # You should reject these tests by typing 'N' at the prompt since
300s # they are incorrect.
300s 
300s > res
300s intercept     slope       rsq 
300s -3.54e+13  7.01e+11  9.39e-01 
300s attr(,"class")
300s [1] "fastlm"
300s 
300s | Value mismatch: 
300s 
300s [1] "Mean relative difference: 1.99e+10"
300s 
300s | State mismatch; see `.NEW$state` and `.REF$state`.
300s 
300s unitizer> Q
300s 
300s | No changes recorded.
301s | unitizer unchanged.
301s 
301s > unitizer:::read_line_set_vals(c(".DIFF$state", "Q"))
301s > 
301s > unitize(FLM.TEST.FILE, interactive.mode = TRUE, use.diff = FALSE)
301s 
301s +------------------------------------------------------------------------------+
301s | unitizer for: unitizer/fastlm1.R                                             |
301s +------------------------------------------------------------------------------+
301s 
301s              Pass Fail
301s  <untitled>     2    2
301s ......................
301s                 2    2
301s 
301s - Failed -----------------------------------------------------------------------
301s 
301s | The 2 tests in this section failed because the new evaluations do not match 
301s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
301s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
301s 
301s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
301s > dat <- data.frame(x = 1:100, y = (1:100)^2)
301s > res <- fastlm(dat$x, dat$y)
301s 
301s # Our fast computations do not produce the same results as our
301s # original tests so they fail.  If you need more detail than the
301s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
301s #
301s # You should reject these tests by typing 'N' at the prompt since
301s # they are incorrect.
301s 
301s > res
301s intercept     slope       rsq 
301s -3.54e+13  7.01e+11  9.39e-01 
301s attr(,"class")
301s [1] "fastlm"
301s 
301s | Value mismatch: 
301s 
301s [1] "Mean relative difference: 1.99e+10"
301s 
301s | State mismatch; see `.NEW$state` and `.REF$state`.
301s 
301s unitizer> .DIFF$state
301s | State mismatch:
301s 
301s Attributes: < Component "search.path": 1 string mismatch >
301s 
301s unitizer> Q
301s 
301s | No changes recorded.
301s | unitizer unchanged.
301s 
301s > 
301s > # - "failing diff" -------------------------------------------------------------
301s > 
301s > unitizer:::read_line_set_vals("Q")
301s > mock(diffobj::diffObj, quote(stop("A failing diff.")))
301s > unitize(FLM.TEST.FILE, interactive.mode = TRUE)
301s 
301s +------------------------------------------------------------------------------+
301s | unitizer for: unitizer/fastlm1.R                                             |
301s +------------------------------------------------------------------------------+
301s 
301s              Pass Fail
301s  <untitled>     2    2
301s ......................
301s                 2    2
301s 
301s - Failed -----------------------------------------------------------------------
301s 
301s | The 2 tests in this section failed because the new evaluations do not match 
301s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
301s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
301s 
301s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
301s > dat <- data.frame(x = 1:100, y = (1:100)^2)
301s > res <- fastlm(dat$x, dat$y)
301s 
301s # Our fast computations do not produce the same results as our
301s # original tests so they fail.  If you need more detail than the
301s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
301s #
301s # You should reject these tests by typing 'N' at the prompt since
301s # they are incorrect.
301s 
301s > res
301s intercept     slope       rsq 
301s -3.54e+13  7.01e+11  9.39e-01 
301s attr(,"class")
301s [1] "fastlm"
301s 
301s Error in diffObj(curr.err@.ref, curr.err@.new, tar.banner = make_cont(".ref"),  : 
301s   A failing diff.
301s | Value: <diff failed>
301s 
301s | State mismatch; see `.DIFF$state` for details.
301s 
301s unitizer> Q
301s 
301s | No changes recorded.
301s | unitizer unchanged.
301s 
301s > unmock(diffobj::diffObj)
301s > 
301s > # - "multi-accept" -------------------------------------------------------------
301s > 
301s > # Test what happens if we back out of a multi-accept
301s > 
301s > unitizer:::read_line_set_vals(c("YY", "N", "Q"))
301s > unitize(FLM.TEST.FILE, interactive.mode = TRUE)
301s 
301s +------------------------------------------------------------------------------+
301s | unitizer for: unitizer/fastlm1.R                                             |
301s +------------------------------------------------------------------------------+
301s 
301s              Pass Fail
301s  <untitled>     2    2
301s ......................
301s                 2    2
301s 
301s - Failed -----------------------------------------------------------------------
301s 
301s | The 2 tests in this section failed because the new evaluations do not match 
301s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
301s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
301s 
301s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
301s > dat <- data.frame(x = 1:100, y = (1:100)^2)
301s > res <- fastlm(dat$x, dat$y)
301s 
301s # Our fast computations do not produce the same results as our
301s # original tests so they fail.  If you need more detail than the
301s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
301s #
301s # You should reject these tests by typing 'N' at the prompt since
301s # they are incorrect.
301s 
301s > res
301s intercept     slope       rsq 
301s -3.54e+13  7.01e+11  9.39e-01 
301s attr(,"class")
301s [1] "fastlm"
301s 
301s | Value mismatch: 
301s 
301s < .ref                            > .new                          
301s @@ 1,4 @@                         @@ 1,4 @@                       
301s   intercept     slope       rsq     intercept     slope       rsq 
301s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
301s   attr(,"class")                    attr(,"class")                
301s   [1] "fastlm"                      [1] "fastlm"                  
301s 
301s | State mismatch; see `.DIFF$state` for details.
301s 
301s unitizer> YY
301s 
302s   4. res .  .  .  .  .  Failed:-
302s   5. get_slope(res)  .  Failed:-
302s 
302s Choose 'Y' for the 2 tests shown above ([Y]es, [N]o)?
302s unitizer> N
302s 
302s 
302s # Our fast computations do not produce the same results as our
302s # original tests so they fail.  If you need more detail than the
302s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
302s #
302s # You should reject these tests by typing 'N' at the prompt since
302s # they are incorrect.
302s 
302s > res
302s intercept     slope       rsq 
302s -3.54e+13  7.01e+11  9.39e-01 
302s attr(,"class")
302s [1] "fastlm"
302s 
302s | Value mismatch: 
302s 
302s < .ref                            > .new                          
302s @@ 1,4 @@                         @@ 1,4 @@                       
302s   intercept     slope       rsq     intercept     slope       rsq 
302s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
302s   attr(,"class")                    attr(,"class")                
302s   [1] "fastlm"                      [1] "fastlm"                  
302s 
302s | State mismatch; see `.DIFF$state` for details.
302s 
302s unitizer> Q
302s 
302s | No changes recorded.
302s | unitizer unchanged.
302s 
302s > 
302s > # - "multi-input" --------------------------------------------------------------
302s > 
302s > # Or if we request to go to unreviewed when there are none
302s > unitizer:::read_line_set_vals(c("YY", "Y", "B", "U", "Q"))
302s > unitize(FLM.TEST.FILE, interactive.mode = TRUE)
302s 
302s +------------------------------------------------------------------------------+
302s | unitizer for: unitizer/fastlm1.R                                             |
302s +------------------------------------------------------------------------------+
302s 
302s              Pass Fail
302s  <untitled>     2    2
302s ......................
302s                 2    2
302s 
302s - Failed -----------------------------------------------------------------------
302s 
302s | The 2 tests in this section failed because the new evaluations do not match 
302s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
302s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
302s 
302s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
302s > dat <- data.frame(x = 1:100, y = (1:100)^2)
302s > res <- fastlm(dat$x, dat$y)
302s 
302s # Our fast computations do not produce the same results as our
302s # original tests so they fail.  If you need more detail than the
302s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
302s #
302s # You should reject these tests by typing 'N' at the prompt since
302s # they are incorrect.
302s 
302s > res
302s intercept     slope       rsq 
302s -3.54e+13  7.01e+11  9.39e-01 
302s attr(,"class")
302s [1] "fastlm"
302s 
302s | Value mismatch: 
302s 
302s < .ref                            > .new                          
302s @@ 1,4 @@                         @@ 1,4 @@                       
302s   intercept     slope       rsq     intercept     slope       rsq 
302s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
302s   attr(,"class")                    attr(,"class")                
302s   [1] "fastlm"                      [1] "fastlm"                  
302s 
302s | State mismatch; see `.DIFF$state` for details.
302s 
302s unitizer> YY
302s 
303s   4. res .  .  .  .  .  Failed:-
303s   5. get_slope(res)  .  Failed:-
303s 
303s Choose 'Y' for the 2 tests shown above ([Y]es, [N]o)?
303s unitizer> Y
303s 
303s = Finalize Unitizer ============================================================
303s 
303s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
303s | - Replacing 2 out of 2 failed tests
303s 
303s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
303s 
303s unitizer> B
303s 
303s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .        -:-
303s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .        -:-
303s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .        -:-
303s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:Y
303s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:Y
303s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
303s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
303s 
303s | What test do you wish to review (input a test number, [U]nreviewed)?
303s 
303s unitizer> U
303s 
303s | No unreviewed tests.
303s 
303s = Finalize Unitizer ============================================================
303s 
303s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
303s | - Replacing 2 out of 2 failed tests
303s 
303s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
303s 
303s unitizer> Q
303s 
303s | Changes discarded.
303s | unitizer unchanged.
303s 
303s > 
303s > # - "warn in parse" ------------------------------------------------------------
303s > 
303s > # Make sure parse warnings are issued
303s > unitizer:::read_line_set_vals(c("-2147483648L", "Q"))
303s > txt8 <- unitizer:::capture_output(unitize(FLM.TEST.FILE,
303s +     interactive.mode = TRUE))
303s > 
303s > any(grepl("qualified with L", txt8$message))
303s [1] TRUE
303s > 
303s > # - "demo changes" -------------------------------------------------------------
303s > #
303s > # Now actually accept the changes
303s > unitizer:::read_line_set_vals(c("Y", "Y", "Y"))
303s > untz5 <- unitize(FLM.TEST.FILE, interactive.mode = TRUE)
303s 
303s +------------------------------------------------------------------------------+
303s | unitizer for: unitizer/fastlm1.R                                             |
303s +------------------------------------------------------------------------------+
303s 
303s              Pass Fail
303s  <untitled>     2    2
303s ......................
303s                 2    2
303s 
303s - Failed -----------------------------------------------------------------------
303s 
303s | The 2 tests in this section failed because the new evaluations do not match 
303s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
303s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
303s 
303s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
303s > dat <- data.frame(x = 1:100, y = (1:100)^2)
303s > res <- fastlm(dat$x, dat$y)
303s 
303s # Our fast computations do not produce the same results as our
303s # original tests so they fail.  If you need more detail than the
303s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
303s #
303s # You should reject these tests by typing 'N' at the prompt since
303s # they are incorrect.
303s 
303s > res
303s intercept     slope       rsq 
303s -3.54e+13  7.01e+11  9.39e-01 
303s attr(,"class")
303s [1] "fastlm"
303s 
303s | Value mismatch: 
303s 
303s < .ref                            > .new                          
303s @@ 1,4 @@                         @@ 1,4 @@                       
303s   intercept     slope       rsq     intercept     slope       rsq 
303s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
303s   attr(,"class")                    attr(,"class")                
303s   [1] "fastlm"                      [1] "fastlm"                  
303s 
303s | State mismatch; see `.DIFF$state` for details.
303s 
303s unitizer> Y
303s 
303s # This one is also incorrect; reject with 'N'
303s 
303s > get_slope(res)
303s [1] 7.01e+11
303s 
303s | Value mismatch: 
303s 
303s < .ref          > .new        
303s @@ 1 @@         @@ 1 @@       
303s < [1] 101       > [1] 7.01e+11
303s 
303s | State mismatch; see `.DIFF$state` for details.
303s 
303s unitizer> Y
303s 
303s = Finalize Unitizer ============================================================
303s 
303s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
303s | - Replacing 2 out of 2 failed tests
303s 
303s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
303s 
303s unitizer> Y
303s 
303s | unitizer updated.
303s 
303s > unitizer:::read_line_set_vals(NULL)
303s > 
303s > # - "get_package_dir" ----------------------------------------------------------
303s > 
303s > # These were in t-get but we moved them here to avoid re-loading pkgs.R
303s > 
303s > unitizer:::get_package_dir(f)  # empty
303s character(0)
303s > test.dir.1 <- file.path(".", "utzflm.Rcheck", "utzflm", "R")
303s > identical(
303s +   unitizer:::get_package_dir(test.dir.1),
303s +   normalizePath(dirname(test.dir.1), winslash = "/")
303s + )
303s [1] TRUE
303s > test.dir.2 <- file.path(".", "utzflm.Rcheck")
303s > identical(
303s +   unitizer:::get_package_dir(file.path(test.dir.2, "tests", "tests.R")),
303s +   normalizePath(file.path(test.dir.2, "utzflm"), winslash = "/")
303s + )
303s [1] TRUE
303s > 
303s PASS
303s Begin testing t-error.R
303s 
303s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
303s Copyright (C) 2024 The R Foundation for Statistical Computing
303s Platform: arm-unknown-linux-gnueabihf (32-bit)
303s 
303s R is free software and comes with ABSOLUTELY NO WARRANTY.
303s You are welcome to redistribute it under certain conditions.
303s Type 'license()' or 'licence()' for distribution details.
303s 
303s R is a collaborative project with many contributors.
303s Type 'contributors()' for more information and
303s 'citation()' on how to cite R or R packages in publications.
303s 
303s Type 'demo()' for some demos, 'help()' for on-line help, or
303s 'help.start()' for an HTML browser interface to help.
303s Type 'q()' to quit R.
303s 
304s > source(file.path("_helper", "init.R"))
304s > 
304s > # - "Test Error Diffs" ---------------------------------------------------------
304s > 
304s > diffs <- new(
304s +   "unitizerItemTestsErrorsDiffs",
304s +   value = new("unitizerItemTestsErrorsDiff",
304s +   txt = "value", err = TRUE, diff = diffobj::diffChr(1, 2))
304s + )
304s > diffs$value@diff@target
304s [1] 1
304s > diffs$value@diff@current
304s [1] 2
304s > try(diffs$values)
304s Error in .local(x, i, j, ...) : 
304s   Argument `i` must be one of c("value", "conditions", "output", "message", "aborted", "state")
304s > try(diffs[[NA]])
304s Error in .local(x, i, j, ...) : 
304s   Argument `i` must be character(1L) and not NA
304s > err <- new(
304s +   "unitizerItemTestsErrors", 
304s +   value = new(
304s +     "unitizerItemTestError", compare.err = TRUE, value = c("compare", "error")
304s + ) )
304s > # - "Show Test Error" ----------------------------------------------------------
304s > 
304s > is(unitizer:::as.Diffs(err)@value, "unitizerItemTestsErrorsDiff")
304s [1] TRUE
304s > 
304s PASS
304s Begin testing t-exec.R
304s 
304s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
304s Copyright (C) 2024 The R Foundation for Statistical Computing
304s Platform: arm-unknown-linux-gnueabihf (32-bit)
304s 
304s R is free software and comes with ABSOLUTELY NO WARRANTY.
304s You are welcome to redistribute it under certain conditions.
304s Type 'license()' or 'licence()' for distribution details.
304s 
304s R is a collaborative project with many contributors.
304s Type 'contributors()' for more information and
304s 'citation()' on how to cite R or R packages in publications.
304s 
304s Type 'demo()' for some demos, 'help()' for on-line help, or
304s 'help.start()' for an HTML browser interface to help.
304s Type 'q()' to quit R.
304s 
304s > source(file.path("_helper", "init.R"))
305s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("exec")
305s > 
305s > suppressWarnings(glob <- unitizer:::unitizerGlobal$new())
305s > 
305s > # - "Invisible Expression" -----------------------------------------------------
305s > 
305s > e <- new.env()
305s > exp <- quote(x <- 1:30)
305s > all.equal(1:30, unitizer:::eval_user_exp(exp, e, global = glob)$value)
305s [1] TRUE
305s > 
305s > # `eval_user_exp` must be evaluated outside of test_that; also note that by
305s > # design this will output stuff to stderr and stdout
305s > out.err <- capture.output(type = "message", out.std <- capture.output({
305s +     test.obj.s3 <- structure("hello", class = "test_obj")
305s +     setClass("testObj", list(a = "character"))
305s +     test.obj.s4 <- new("testObj", a = "goodday")
305s +     print.test_obj <- function(x, ...) stop("Error in Print")
305s +     setMethod("show", "testObj", function(object) stop("Error in Show"))
305s +     fun_signal <- function() signalCondition(simpleError("Error in Function",
305s +         sys.call()))
305s +     fun_error <- function() stop("Error in function 2")
305s +     fun_error_cond <- function() stop(simpleError("Error in function 2",
305s +         sys.call()))
305s +     fun_error_cond_call <- function() fun_error_cond()
305s +     fun_s3 <- function() test.obj.s3
305s +     fun_s4 <- function() test.obj.s4
305s +     fun_msg <- function() message("This is a Message")
305s +     fun_warn <- function() warning("This is a warning", immediate. = TRUE)
305s +     eval.env <- sys.frame(sys.nframe())
305s +     ex0 <- unitizer:::eval_user_exp(quote(stop()), eval.env,
305s +         global = glob)
305s +     unitizer:::set_trace(ex0$trace)
305s +     trace0 <- unitizer:::unitizer_traceback()
305s +     ex1 <- unitizer:::eval_user_exp(quote(fun_signal()), eval.env,
305s +         global = glob)
305s +     unitizer:::set_trace(ex1$trace)
305s +     trace1 <- unitizer:::unitizer_traceback()
305s +     ex2 <- unitizer:::eval_user_exp(quote(fun_error()), eval.env,
305s +         global = glob)
305s +     unitizer:::set_trace(ex2$trace)
305s +     trace2 <- unitizer:::unitizer_traceback()
305s +     ex2a <- unitizer:::eval_user_exp(expression(fun_error()),
305s +         eval.env, global = glob)
305s +     unitizer:::set_trace(ex2a$trace)
305s +     trace2a <- unitizer:::unitizer_traceback()
305s +     ex6 <- unitizer:::eval_user_exp(quote(fun_error_cond()),
305s +         eval.env, global = glob)
305s +     unitizer:::set_trace(ex6$trace)
305s +     trace6 <- unitizer:::unitizer_traceback()
305s +     ex7 <- unitizer:::eval_user_exp(quote(fun_error_cond_call()),
305s +         eval.env, global = glob)
305s +     unitizer:::set_trace(ex7$trace)
305s +     trace7 <- unitizer:::unitizer_traceback()
305s +     ex3 <- unitizer:::eval_user_exp(quote(fun_s3()), eval.env,
305s +         global = glob)
305s +     unitizer:::set_trace(ex3$trace)
305s +     trace3 <- unitizer:::unitizer_traceback()
305s +     ex3a <- unitizer:::eval_user_exp(expression(fun_s3()), eval.env,
305s +         global = glob)
305s +     unitizer:::set_trace(ex3a$trace)
305s +     trace3a <- unitizer:::unitizer_traceback()
305s +     ex4 <- unitizer:::eval_user_exp(quote(fun_s4()), eval.env,
305s +         global = glob)
305s +     ex4a <- unitizer:::eval_user_exp(expression(fun_s4()), eval.env,
305s +         global = glob)
305s +     unitizer:::set_trace(ex4a$trace)
305s +     trace4a <- unitizer:::unitizer_traceback()
305s +     ex5 <- unitizer:::eval_user_exp(quote(sum(1:20)), eval.env,
305s +         global = glob)
305s +     ex9 <- unitizer:::eval_user_exp(quote(fun_warn()), eval.env,
305s +         global = glob)
305s +     ex10 <- unitizer:::eval_user_exp(quote(fun_msg()), eval.env,
305s +         global = glob)
305s +     ex11 <- unitizer:::eval_user_exp(quote((function() quote(stop("shouldn't error")))()),
305s +         eval.env, global = glob)
305s + }))
305s > # NOTE: deparsed test values generated with unitizer:::deparse_mixed
305s > 
305s > # - "User Expression Evaluation" -----------------------------------------------
305s > 
305s > # a condition error, signaled, not stop (hence no aborted, etc.)
305s > identical(ex1, rds(100))
305s [1] TRUE
305s > # a stop
305s > identical(ex2, rds(200))
305s [1] TRUE
305s > # ex3 and ex3a are a total PITA because the calls need to be manually copied
305s > # b/c they don't deparse properly even with control="all", the trace and
305s > # call component loose the `structure` part in the quoted portions...
305s > # a stop in print;
305s > identical(ex3, rds(300))
305s [1] TRUE
305s > identical(ex3a, rds(400))
305s [1] TRUE
305s > # S4 objects; these originally caused problems since they don't deparse
305s > identical(ex4, rds(500))
305s [1] TRUE
305s > identical(ex4a, rds(600))
305s [1] TRUE
305s > # a normal expression
305s > identical(ex5, rds(700))
305s [1] TRUE
305s > identical(ex9, rds(800))
305s [1] TRUE
305s > all.equal(ex10, rds(900)) # not sure why identical doesn't work here
305s [1] TRUE
305s > # expect_false(ex11$aborted)
305s > ex11$aborted  # FALSE
305s [1] FALSE
305s > 
305s > # - "Trace Setting" ------------------------------------------------------------
305s > 
305s > identical(trace0, trace1)
305s [1] TRUE
305s > # expect_identical(trace2, list("stop(\"Error in function 2\")",
305s > #     "fun_error()"))
305s > trace2
305s [[1]]
305s [1] "stop(\"Error in function 2\")"
305s 
305s [[2]]
305s [1] "fun_error()"
305s 
305s > trace6
305s [[1]]
305s [1] "stop(simpleError(\"Error in function 2\", sys.call()))"
305s 
305s [[2]]
305s [1] "fun_error_cond()"
305s 
305s > trace7
305s [[1]]
305s [1] "stop(simpleError(\"Error in function 2\", sys.call()))"
305s 
305s [[2]]
305s [1] "fun_error_cond()"
305s 
305s [[3]]
305s [1] "fun_error_cond_call()"
305s 
305s > trace3a
305s [[1]]
305s [1] "stop(\"Error in Print\")"
305s 
305s [[2]]
305s [1] "print.test_obj(\"hello\")"
305s 
305s [[3]]
305s [1] "print(\"hello\")"
305s 
305s > 
305s > # needed to tweak this one so it would pass in R-devel 3.4.1
305s > # expect_true(all(mapply(function(x, y) grepl(y, x), trace4a, list("stop\\(\"Error in Show\"\\)",
305s > #     "show\\(.*\"testObj\".*\\)", "show\\(.*\"testObj\".*\\)"))))
305s > all(
305s +   mapply(
305s +     function(x, y) grepl(y, x),
305s +     trace4a,
305s +     list(
305s +       "stop\\(\"Error in Show\"\\)",
305s +       "show\\(.*\"testObj\".*\\)", "show\\(.*\"testObj\".*\\)")
305s + ) )
305s [1] TRUE
305s > # - "Clean Top Level Message" --------------------------------------------------
305s > 
305s > old.width <- options(width = 80L)
305s > a <- unitizer:::eval_with_capture(
305s +   expression(stop("short stop message")), global = glob
305s + )
305s > b <- unitizer:::eval_with_capture(
305s +   expression(stop("short stop .* with regex message")), global = glob
305s + )
305s > c <- unitizer:::eval_with_capture(
305s +   expression(stop("this is a long error message that is supposed to cause R to add a new line after the error: part")),
305s +     global = glob
305s + )
305s > d <- unitizer:::eval_with_capture(
305s +   expression(warning("short warning message")), global = glob
305s + )
305s > e <- unitizer:::eval_with_capture(
305s +   expression(warning("short warning message .* with regex")), global = glob
305s + )
305s > f <- unitizer:::eval_with_capture(
305s +   expression(
305s +     warning("this is a long error message that is supposed to cause R to add a new line after the error: part")
305s +   ),
305s +   global = glob
305s + )
305s > g <- unitizer:::eval_with_capture(
305s +   quote(stop("short stop message")), global = glob
305s + )
305s > h <- unitizer:::eval_with_capture(
305s +   quote(stop("short stop .* with regex message")), global = glob
305s + )
305s > i <- unitizer:::eval_with_capture(
305s +   quote(stop("this is a long error message that is supposed to cause R to add a new line after the error: part")),
305s +   global = glob
305s + )
305s > j <- unitizer:::eval_with_capture(
305s +   quote(warning("short warning message")), global = glob
305s + )
305s > k <- unitizer:::eval_with_capture(
305s +   quote(warning("short warning message .* with regex")), global = glob
305s + )
305s > l <- unitizer:::eval_with_capture(
305s +   quote(warning("this is a long error message that is supposed to cause R to add a new line after the error: part")),
305s +   global = glob
305s + )
305s > m <- unitizer:::eval_with_capture(expression("a"/3), global = glob)
305s > exp.q <- quote({
305s +     fun <- function() warning("error in fun")
305s +     message("boo hay \n there \n")
305s +     warning("this is a fairly long warning wladsfasdfasd that might wrap if we keep typing humpty dumpty sat on a wall and had a big fall")
305s +     warning("ashorter warning blah")
305s +     message("boo hay \n there \n")
305s +     warning()
305s +     fun()
305s +     suppressWarnings(warning("quiet warn"))
305s +     message("boo hay \n there \n")
305s +     error(3)
305s + })
305s > x <- unitizer:::eval_with_capture(exp.q, global = glob)
305s > exp.exp <- expression({
305s +     fun <- function() warning("error in fun")
305s +     message("boo hay \n there \n")
305s +     warning("this is a fairly long warning wladsfasdfasd that might wrap if we keep typing humpty dumpty sat on a wall and had a big fall")
305s +     warning("ashorter warning blah")
305s +     message("boo hay \n there \n")
305s +     warning()
305s +     fun()
305s +     suppressWarnings(warning("quiet warn"))
305s +     message("boo hay \n there \n")
305s +     error(3)
305s + })
305s > y <- unitizer:::eval_with_capture(exp.exp, global = glob)
305s > options(old.width)
305s > 
305s > a$message
305s [1] "Error: short stop message\n"
305s > b$message
305s [1] "Error: short stop .* with regex message\n"
305s > c$message
305s [1] "Error: \n  this is a long error message that is supposed to cause R to add a new line after the error: part\n"
305s > d$message
305s [1] "Warning: short warning message\n"
305s > e$message
305s [1] "Warning: short warning message .* with regex\n"
305s > f$message
305s [1] "Warning:\n  this is a long error message that is supposed to cause R to add a new line after the error: part\n"
305s > g$message
305s [1] "Error: short stop message\n"
305s > h$message
305s [1] "Error: short stop .* with regex message\n"
305s > i$message
305s [1] "Error: \n  this is a long error message that is supposed to cause R to add a new line after the error: part\n"
305s > j$message
305s [1] "Warning: short warning message\n"
305s > k$message
305s [1] "Warning: short warning message .* with regex\n"
305s > l$message
305s [1] "Warning:\n  this is a long error message that is supposed to cause R to add a new line after the error: part\n"
305s > m$message
305s [1] "Error in \"a\"/3 : non-numeric argument to binary operator\n"
305s > 
305s > # `sub` needed due to inconsistencies in R 3.4 and 3.3 for top level error
305s > # messages
305s > writeLines(sub("\\bError.*: ", "", x$message))
305s boo hay 
305s  there 
305s 
305s Warning:
305s   this is a fairly long warning wladsfasdfasd that might wrap if we keep typing humpty dumpty sat on a wall and had a big fall
305s Warning: ashorter warning blah
305s boo hay 
305s  there 
305s 
305s Warning: 
305s Warning in fun() : error in fun
305s boo hay 
305s  there 
305s 
305s could not find function "error"
305s 
305s > writeLines(sub("\\bError.*: ", "", y$message))
305s boo hay 
305s  there 
305s 
305s Warning:
305s   this is a fairly long warning wladsfasdfasd that might wrap if we keep typing humpty dumpty sat on a wall and had a big fall
305s Warning: ashorter warning blah
305s boo hay 
305s  there 
305s 
305s Warning: 
305s Warning in fun() : error in fun
305s boo hay 
305s  there 
305s 
305s could not find function "error"
305s 
305s > 
305s > 
305s PASS
305s Begin testing t-get.R
305s 
305s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
305s Copyright (C) 2024 The R Foundation for Statistical Computing
305s Platform: arm-unknown-linux-gnueabihf (32-bit)
305s 
305s R is free software and comes with ABSOLUTELY NO WARRANTY.
305s You are welcome to redistribute it under certain conditions.
305s Type 'license()' or 'licence()' for distribution details.
305s 
305s R is a collaborative project with many contributors.
305s Type 'contributors()' for more information and
305s 'citation()' on how to cite R or R packages in publications.
305s 
305s Type 'demo()' for some demos, 'help()' for on-line help, or
305s 'help.start()' for an HTML browser interface to help.
305s Type 'q()' to quit R.
305s 
305s > source(file.path("_helper", "init.R"))
305s > source(file.path("aammrtf", "mock.R"))
305s > 
305s > toy.path <- file.path("_helper", "unitizers", "misc.unitizer")
305s > toy.stor <- readRDS(file.path(toy.path, "data.rds"))
305s > 
305s > # - "Error Cases" --------------------------------------------------------------
305s > 
305s > try(get_unitizer(1))
305s Error in get_unitizer.default(1) : 
305s   No method defined for object of class "numeric"; make sure that the specified `store.id` is a reference to a valid unitizer store and had defined `get_unitizer` and `set_unitizer` methods.
305s > try(get_unitizer(letters))
305s Error in get_unitizer.character(letters) : 
305s   Argument `store.id` must be a 1 length character vector
305s > try(get_unitizer("_helper"))
305s Error in get_unitizer.character("_helper") : 
305s   Argument `store.id` does not appear to refer to a unitizer directory
305s > try(get_unitizer("t-get.R"))
305s Error in get_unitizer.character("t-get.R") : 
305s   Argument `store.id` does not appear to refer to a unitizer directory
305s > try(set_unitizer(1))
305s Error in set_unitizer.default(1) : 
305s   No method defined for object of class "numeric"; make sure that the specified `store.id` is a reference to a valid unitizer store and had defined `get_unitizer` and `set_unitizer` methods.
305s > try(set_unitizer(letters))
305s Error in set_unitizer.character(letters) : 
305s   Argument `store.id` must be a 1 length character vector
305s > # 4.3 changed reporting of missing argument errors
305s > tryCatch(set_unitizer("a"), error=function(e) conditionMessage(e))
305s [1] "argument \"unitizer\" is missing, with no default"
305s > try(set_unitizer("a", "blergh"))
305s Error in set_unitizer.character("a", "blergh") : 
305s   Argument `unitizer` must be a unitizer
305s > !file.exists("a") # TRUE
305s [1] TRUE
305s > try(suppressWarnings(set_unitizer("tests/# ;!./# \\/", toy.stor)))
305s Error in set_unitizer.character("tests/# ;!./# \\/", toy.stor) : 
305s   Could not create `store.id`; make sure it is a valid file name; see warning for details
305s > 
305s > # - "Get works as expected" ----------------------------------------------------
305s > 
305s > tmp.dir <- tempfile()
305s > dir.create(tmp.dir)
305s > tmp.sub.dir <- paste0(tmp.dir, "/get.test.dir")
305s > tmp.fake.utz <- paste0(tmp.dir, "/fake.unitizer")
305s > 
305s > # expect_false(get_unitizer("asldkfjskfa"))
305s > get_unitizer("asldkfjskfa") # FALSE
305s [1] FALSE
305s > all.equal(get_unitizer(toy.path), toy.stor)
305s [1] TRUE
305s > is(toy.stor, "unitizer")
305s [1] TRUE
305s > dir.create(tmp.fake.utz)
305s > fake.utz <- file.path(tmp.fake.utz, "data.rds")
305s > cat("# this is not an RDS\n", file = fake.utz)
305s > # expect_error(capture.output(get_unitizer(tmp.fake.utz), type = "message"),
305s > #     "Failed loading unitizer")
305s > try(capture.output(get_unitizer(tmp.fake.utz), type = "message"))
305s Error in get_unitizer.character(tmp.fake.utz) : 
305s   Failed loading unitizer; see prior error messages for details
305s > 
305s > tmp.sub.dir <- paste0(tmp.dir, "/get.test.dir")
305s > tmp.sub.dir2 <- paste0(tmp.dir, "/get.test.dir2")
305s > tmp.sub.dir3 <- paste0(tmp.dir, "/load.dirs")
305s > 
305s > # - "Set works as expected" ----------------------------------------------------
305s > 
305s > dir.create(tmp.sub.dir)
305s > set_unitizer(tmp.sub.dir, toy.stor)
305s [1] TRUE
305s > all.equal(readRDS(paste0(tmp.sub.dir, "/data.rds")), toy.stor)
305s [1] TRUE
305s > just.a.file <- tempfile()
305s > on.exit(unlink(just.a.file))
305s > cat("just a file\n", file = just.a.file)
305s > err <- capture.output(try(set_unitizer(just.a.file, toy.stor)), type='message')
305s > any(grepl('not a directory', err))
305s [1] TRUE
305s > 
305s > # - "load/store_unitizer" ------------------------------------------------------
305s > 
305s > # Several different stores in different states (i.e. requiring upgrade,
305s > # not unitizers, etc.)
305s > dir.create(tmp.sub.dir3)
305s > make.path <- lapply(file.path(tmp.sub.dir3, dir("_helper/ref-objs/load/")),
305s +     dir.create)
305s > if (!all(unlist(make.path))) stop("Failed making paths")
305s > file.copy(list.files("_helper/ref-objs/load", full.names = TRUE), tmp.sub.dir3,
305s +     recursive = TRUE)
305s [1] TRUE TRUE TRUE TRUE TRUE TRUE
305s > par.frame <- new.env()
305s > store.ids <- as.list(list.files(tmp.sub.dir3, full.names = TRUE))
305s > 
305s > # must be upgraded, but cannot
305s > load.try <- unitizer:::capture_output(
305s +   try(
305s +     unitizer:::load_unitizers(store.ids, rep(NA_character_,
305s +       length(store.ids)), par.frame = par.frame, interactive.mode = FALSE,
305s +       mode = "unitize", force.upgrade = FALSE, show.progress=0L, transcript=FALSE
305s + ) ) )
306s > any(grepl('could not be loaded', load.try$message))
306s [1] TRUE
306s > any(grepl('could not be upgraded', load.try$message))
306s [1] TRUE
306s > any(grepl('Cannot proceed', load.try$message))
306s [1] TRUE
306s > 
306s > # handle failure in store_unitizer, we just try this on one of the store ids
306s > 
306s > out <- unitizer:::capture_output(
306s +   unitizer:::load_unitizers(
306s +     store.ids[4], rep(NA_character_, length(store.ids))[4],
306s +     par.frame = par.frame, interactive.mode = FALSE, mode = "unitize",
306s +     force.upgrade = TRUE, show.progress=0L, transcript=FALSE
306s +   )
306s + )
306s > any(grepl('Upgraded test file does not match original', out$message))
306s [1] TRUE
306s > 
306s > # try weird store ids
306s > out <- unitizer:::capture_output(
306s +   invalid.store <- try(
306s +     unitizer:::load_unitizers(
306s +       list(structure("hello", class = "unitizer_error_store")),
306s +       NA_character_, par.frame = par.frame,
306s +       interactive.mode = FALSE, mode = "unitize", force.upgrade = FALSE,
306s +       show.progress=0L, transcript=FALSE
306s +   ) )
306s + )
306s > inherits(invalid.store, "try-error")
306s [1] TRUE
306s > any(grepl("returned something other than", out$message))
306s [1] TRUE
306s > 
306s > # Load mix of loadable and not loadable objects
306s > glob <- suppressWarnings(unitizer:::unitizerGlobal$new())
306s > # with warning: "does not exist|test file does not")
306s > out <- unitizer:::capture_output(
306s +   untzs <- try(
306s +     unitizer:::load_unitizers(
306s +       store.ids, rep(NA_character_, length(store.ids)), par.frame = par.frame,
306s +       interactive.mode = FALSE, mode = "unitize", force.upgrade = TRUE,
306s +       global = glob, show.progress=0L, transcript=FALSE
306s + ) ) )
306s > inherits(untzs, "try-error")
306s [1] TRUE
306s > any(grepl('could not be loaded', out$message))
306s [1] TRUE
306s > any(grepl('could not be upgraded', out$message))
306s [1] TRUE
306s > any(grepl('Cannot proceed', out$message))
306s [1] TRUE
306s > 
306s > # Test failure of storage of a loaded and upgraded unitizers
306s > 
306s > untzs <- unitizer:::load_unitizers(
306s +   store.ids[4], NA_character_, par.frame = par.frame,
306s +   interactive.mode = FALSE, mode = "unitize", force.upgrade = TRUE,
306s +   global = glob, show.progress=0L, transcript=FALSE
306s + )
306s Warning in addSlot(object, "cons", NULL) :
306s   Slot `cons` does not exist in current version of `unitizer` so not added to object.
306s Warning in addSlot(object, "jump.to.test", 0L) :
306s   Slot `jump.to.test` does not exist in current version of `unitizer` so not added to object.
306s Warning in unitizer:::load_unitizers(store.ids[4], NA_character_, par.frame = par.frame,  :
306s   Upgraded test file does not match original test file ('internals.R' vs 'NA').
306s > mock(unitizer:::set_unitizer, quote(stop("set fail")))
306s > try(unitizer:::store_unitizer(untzs[[1]]))
306s Error in set_unitizer(unitizer@id, unitizer) : set fail
306s Error in unitizer:::store_unitizer(untzs[[1]]) : 
306s   Error attempting to save unitizer, see previous messages.
306s > unmock(unitizer:::set_unitizer)
306s > 
306s > # Try reloading already loaded unitisers
306s > reload <- unitizer:::as.list(untzs)
306s > # this creates a global object, hence warning
306s > untzs1a <- unitizer:::load_unitizers(
306s +   reload, rep(NA_character_, length(reload)), par.frame = par.frame,
306s +   interactive.mode = FALSE, mode = "unitize", force.upgrade = FALSE,
306s +   show.progress=0L, transcript=FALSE
306s + )
306s Warning in .Object$initialize(...) :
306s   Instantiated global object without global namespace registry; you should only see this warning you are using `repair_environments`.
306s > all(vapply(unitizer:::as.list(untzs1a), is, logical(1L), "unitizer"))
306s [1] TRUE
306s > 
306s > # misc tests
306s > # warning Instantiated global object without
306s > 
306s > untzs2 <- unitizer:::load_unitizers(
306s +   list(tmp.sub.dir2), NA_character_, par.frame, interactive.mode = FALSE,
306s +   mode = "unitize", force.upgrade = FALSE, show.progress=0L, transcript=FALSE
306s + )
306s Warning in .Object$initialize(...) :
306s   Instantiated global object without global namespace registry; you should only see this warning you are using `repair_environments`.
306s > is(untzs2[[1L]], "unitizer")
306s [1] TRUE
306s > identical(parent.env(untzs2[[1L]]@zero.env), par.frame)
306s [1] TRUE
306s > 
306s > # something that won't get reset on load so we can check our re-load
306s > untzs2[[1L]]@eval.time <- 33
306s > unitizer:::store_unitizer(untzs2[[1L]])
306s | unitizer updated.
306s 
306s > 
306s > # warning Instantiated global object without
306s > untzs2.1 <- unitizer:::load_unitizers(
306s +   list(tmp.sub.dir2), NA_character_, par.frame, interactive.mode = FALSE,
306s +   mode = "unitize", force.upgrade = FALSE, show.progress=0L, transcript=FALSE
306s + )
306s Warning in .Object$initialize(...) :
306s   Instantiated global object without global namespace registry; you should only see this warning you are using `repair_environments`.
306s > untzs2.1[[1L]]@eval.time # 33
306s [1] 33
306s > unlink(c(tmp.sub.dir2, tmp.sub.dir3, tmp.sub.dir), recursive = TRUE)
306s > 
306s > # - "is_package" ---------------------------------------------------------------
306s > 
306s > unitizer:::is_package_dir(system.file(package = "stats"))
306s [1] TRUE
306s > unitizer:::is_package_dir(system.file(package = "methods"))
306s [1] TRUE
306s > 
306s > ## Seems like some change now tests no longer installed by default with
306s > ## packages, at least in the unix distros, so can't easily test with
306s > ## has.tests==TRUE
306s > 
306s > unitizer:::pretty_path(file.path(system.file(package = "stats"),
306s +     "DESCRIPTION"))
306s [1] "package:stats/DESCRIPTION"
306s > old.wd <- getwd()
306s > setwd(system.file(package = "stats"))
306s > unitizer:::pretty_path(file.path(system.file(package = "stats"), "DESCRIPTION"))
306s [1] "DESCRIPTION"
306s > unitizer:::pretty_path(file.path(system.file(package = "stats")))
306s [1] "."
306s > setwd(old.wd)
306s > 
306s > # just picked some folder we know will not work (No Desc)
306s > unitizer:::is_package_dir(file.path(system.file(package = "stats"), "R"))
306s [1] "No DESCRIPTION file"
306s > unitizer:::is_package_dir("ASDFASDF")
306s [1] "not an existing directory"
306s > unitizer:::is_package_dir(file.path(system.file(package = "unitizer"),
306s +     "expkg", "baddescription1"))
306s [1] "DESCRIPTION file did not have a package name entry"
306s > # *get_*package_dir
306s > pkg.f <- file.path(system.file(package = "unitizer"), "tests",
306s +     "interactive", "run.R")
306s > length(unitizer:::get_package_dir(pkg.f)) == 1L
306s [1] TRUE
306s > length(unitizer:::get_package_dir(dirname(pkg.f))) == 1L
306s [1] TRUE
306s > f <- tempfile()
306s > cat("helloworld", file = f)
306s > length(unitizer:::get_package_dir(f)) == 0L
306s [1] TRUE
306s > unlink(f)
306s > 
306s > # some more tests moved to t-demo.R to avoid reloading pkgs
306s > 
306s > # - "is_unitizer_dir" ----------------------------------------------------------
306s > 
306s > base.dir <- file.path(system.file(package = "unitizer"), "expkg", "infer")
306s > unitizer:::is_unitizer_dir(base.dir) # FALSE
306s [1] FALSE
306s > unitizer:::is_unitizer_dir(
306s +   file.path(base.dir, "tests", "unitizer", "infer.unitizer")
306s + )
306s [1] TRUE
306s > # - "infer_unitizer_location" --------------------------------------------------
306s > 
306s > infer <- function(...) infer_unitizer_location(..., interactive.mode = FALSE)
306s > base.dir <- file.path(system.file(package = "unitizer"), "expkg", "infer")
306s > 
306s > # Verify package is still in state we built tests on; need to sort b/c
306s > # different platforms have different lexical sorts
306s > identical(
306s +   sort(c("aaa.R", "aaa.unitizer", "abc.R", "abc.unitizer", "inf.R",
306s +       "inf.unitizer", "infer.R", "infer.unitizer", "zzz.R", "zzz.unitizer")),
306s +   list.files(file.path(base.dir, "tests", "unitizer"))
306s + )
306s [1] TRUE
306s > # Package dir
306s > unitizer:::capture_output(inf <- infer(base.dir))
306s > basename(inf)
306s [1] "infer.R"
306s > unitizer:::capture_output(inf <- infer(base.dir, type = "d"))
306s > basename(inf)
306s [1] "unitizer"
306s > unitizer:::capture_output(inf <- infer(base.dir, type = "u"))
306s > basename(inf)
306s [1] "infer.unitizer"
306s > 
306s > inf.dir <- infer(file.path(base.dir, "*")) # warn
306s Warning in infer_unitizer_location.character(..., interactive.mode = FALSE) :
306s   5 possible targets; too many to unambiguously infer desired file
306s > identical(file.path(base.dir, "*"), inf.dir)
306s [1] TRUE
306s > 
306s > unitizer:::capture_output(inf <- infer(file.path(base.dir, "z")))
306s > basename(inf)
306s [1] "zzz.R"
306s > unitizer:::capture_output(inf <- infer(file.path(base.dir, "z"), type = "u"))
306s > basename(inf)
306s [1] "zzz.unitizer"
306s > 
306s > # Normal dir
306s > base.dir2 <- file.path(base.dir, "tests", "unitizer")
306s > # note don't need * to generate warning
306s > out <- unitizer:::capture_output(inf.dir2 <- infer(base.dir2))  # warn
306s > any(grepl("5 possible targets", out$message))
306s [1] TRUE
306s > identical(base.dir2, inf.dir2)
306s [1] TRUE
306s > out <- unitizer:::capture_output(infer(file.path(base.dir2, "a")))
306s > any(grepl("2 possible targets", out$message))
306s [1] TRUE
306s > out <- unitizer:::capture_output(infer(file.path(base.dir2, "a"), type = "u"))
306s > any(grepl("2 possible targets", out$message))
306s [1] TRUE
306s > out <-
306s +   unitizer:::capture_output(fname <- basename(infer(file.path(base.dir2, "z"))))
306s > fname
306s [1] "zzz.R"
306s > any(grepl('Inferred test file location:', out))
306s [1] TRUE
306s > out <- unitizer:::capture_output(
306s +   fname <- basename(infer(file.path(base.dir2, "z"), type="u"))
306s + )
306s > fname
306s [1] "zzz.unitizer"
306s > any(grepl('Inferred unitizer location:', out))
306s [1] TRUE
306s > 
306s > # Random file without setting working dir first, in order for this to work
306s > # non-interactivel we need it to work with the R CMD check dir structure,
306s > # and possibly with the covr dir structure
306s > if (interactive())  infer("tests2")
306s > 
306s > # Interactive mode
306s > unitizer:::read_line_set_vals(c("26", "Q"))
306s > # warn/output
306s > select <- unitizer:::infer_unitizer_location(
306s +   file.path(base.dir, "*"), type = "f", interactive.mode = TRUE
306s + )
306s Possible matching files from "tests/unitizer":
306s   1: aaa.R
306s   2: abc.R
306s   3: inf.R
306s   4: infer.R
306s   5: zzz.R
306s unitizer> 26
306s | Type a number in `1:5` at the prompt
306s [1] 26
306s unitizer> Q
306s 
306s No file selected
306s Warning in infer_unitizer_location.character(file.path(base.dir, "*"), type = "f",  :
306s   Invalid user selection
306s > identical(select, file.path(base.dir, "*"))
306s [1] TRUE
306s > 
306s > unitizer:::read_line_set_vals(c("5"))
306s > # output
306s > sel.loc <- unitizer:::infer_unitizer_location(file.path(base.dir,
306s +     "*"), type = "f", interactive.mode = TRUE)
306s Possible matching files from "tests/unitizer":
306s   1: aaa.R
306s   2: abc.R
306s   3: inf.R
306s   4: infer.R
306s   5: zzz.R
306s unitizer> 5
306s Selected file: zzz.R
306s > basename(sel.loc)
306s [1] "zzz.R"
306s > unitizer:::read_line_set_vals(NULL)
306s > 
306s > # Non standard inferences
306s > # warn
306s > out <- unitizer:::capture_output(
306s +   unitizer:::infer_unitizer_location(NULL, interactive = FALSE)
306s + )
306s > any(grepl("too many to unambiguously", out$message))
306s [1] TRUE
306s > 
306s > fake.class <- structure(list(), class = "thisclassdoesn'texist")
306s > identical(infer(fake.class), fake.class)
306s [1] TRUE
306s > 
306s > # no match since file can't exist (warn)
306s > f <- tempfile()
306s > out <- capture.output(
306s +   invisible(unitizer:::infer_unitizer_location(f)), type='message'
306s + )
306s > any(grepl("No possible matching files", out))
306s [1] TRUE
306s > 
306s > 
306s > unlink(tmp.dir, recursive = TRUE)
306s > 
306s > 
306s PASS
306s Begin testing t-global.R
306s 
306s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
306s Copyright (C) 2024 The R Foundation for Statistical Computing
306s Platform: arm-unknown-linux-gnueabihf (32-bit)
306s 
306s R is free software and comes with ABSOLUTELY NO WARRANTY.
306s You are welcome to redistribute it under certain conditions.
306s Type 'license()' or 'licence()' for distribution details.
306s 
306s R is a collaborative project with many contributors.
306s Type 'contributors()' for more information and
306s 'citation()' on how to cite R or R packages in publications.
306s 
306s Type 'demo()' for some demos, 'help()' for on-line help, or
306s 'help.start()' for an HTML browser interface to help.
306s Type 'q()' to quit R.
306s 
306s > source(file.path("_helper", "init.R"))
307s > 
307s > # Most tests involving global are scattered all over the place, just putting a
307s > # few extra ones that are very specifically about global here
307s > #
307s > # - "Singleton Implementation Working" -----------------------------------------
307s > 
307s > invisible(unitizer:::unitizerGlobal$new()) # warn
307s Warning in .Object$initialize(...) :
307s   Instantiated global object without global namespace registry; you should only see this warning you are using `repair_environments`.
307s > glob.first <- unitizer:::unitizerGlobal$new(set.global = TRUE)
307s > try(unitizer:::unitizerGlobal$new(set.global = TRUE))
307s Error in .Object$initialize(...) : 
307s   Internal Error: global tracking object already exists; this should never happen; contact maintainer
307s > try(unitizer:::unitizerGlobal$new())
307s Error in .Object$initialize(...) : 
307s   Internal Error: global tracking object already exists; this should never happen; contact maintainer
307s > glob.first$release()
307s > 
307s > # - "Dummy Display" ------------------------------------------------------------
307s > 
307s > show(new("unitizerDummy"))  # not recorded
307s <object not recorded>
307s > 
307s > # - "Disable / Enable" ---------------------------------------------------------
307s > 
307s > suppressWarnings(glob <- unitizer:::unitizerGlobal$new())
307s > glob$disable()
307s An object of class "unitizerGlobalStatus"
307s Slot "search.path":
307s [1] 0
307s 
307s Slot "options":
307s [1] 0
307s 
307s Slot "working.directory":
307s [1] 0
307s 
307s Slot "random.seed":
307s [1] 0
307s 
307s Slot "namespaces":
307s [1] 0
307s 
307s > glob$enable(c(search.path = 2L))  # warn state setting
307s Warning in glob$enable(c(search.path = 2L)) :
307s   State setting for `search.path` has already been disabled and cannot be re-enabled
307s An object of class "unitizerGlobalStatus"
307s Slot "search.path":
307s [1] 0
307s 
307s Slot "options":
307s [1] 0
307s 
307s Slot "working.directory":
307s [1] 0
307s 
307s Slot "random.seed":
307s [1] 0
307s 
307s Slot "namespaces":
307s [1] 0
307s 
307s > 
307s > 
307s PASS
307s Begin testing t-handledruns.R
307s 
307s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
307s Copyright (C) 2024 The R Foundation for Statistical Computing
307s Platform: arm-unknown-linux-gnueabihf (32-bit)
307s 
307s R is free software and comes with ABSOLUTELY NO WARRANTY.
307s You are welcome to redistribute it under certain conditions.
307s Type 'license()' or 'licence()' for distribution details.
307s 
307s R is a collaborative project with many contributors.
307s Type 'contributors()' for more information and
307s 'citation()' on how to cite R or R packages in publications.
307s 
307s Type 'demo()' for some demos, 'help()' for on-line help, or
307s 'help.start()' for an HTML browser interface to help.
307s Type 'q()' to quit R.
307s 
307s > source(file.path("_helper", "init.R"))
307s > 
307s > # - "Ensure we get warning if we try to run in handlers" -----------------------
307s > 
307s > try(unitize("_helper/unitizers/trivial.R"))
307s 
307s Warning in check_call_stack() :
307s   It appears you are running unitizer inside an error handling function such as 
307s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
307s couraged as it may cause unpredictable behavior from unitizer in the event tests
307s produce conditions / errors.  We strongly recommend you re-run your tests 
307s outside of such handling functions.
308s Warning in history_capt(history, interactive.mode) :
308s   Unable to capture history in non-interactive mode.
308s | 4/4 tests passed; nothing to review.
308s 
308s > tryCatch(unitize("_helper/unitizers/trivial.R"))
308s 
308s Warning in check_call_stack() :
308s   It appears you are running unitizer inside an error handling function such as 
308s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
308s couraged as it may cause unpredictable behavior from unitizer in the event tests
308s produce conditions / errors.  We strongly recommend you re-run your tests 
308s outside of such handling functions.
308s Warning in history_capt(history, interactive.mode) :
308s   Unable to capture history in non-interactive mode.
308s | 4/4 tests passed; nothing to review.
308s 
308s > withRestarts(unitize("_helper/unitizers/trivial.R"))
308s 
308s Warning in check_call_stack() :
308s   It appears you are running unitizer inside an error handling function such as 
308s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
308s couraged as it may cause unpredictable behavior from unitizer in the event tests
308s produce conditions / errors.  We strongly recommend you re-run your tests 
308s outside of such handling functions.
308s Warning in history_capt(history, interactive.mode) :
308s   Unable to capture history in non-interactive mode.
308s | 4/4 tests passed; nothing to review.
308s 
308s > 
308s > # need to figure out why running this without `try` in covr causes cover to
308s > # fail with
308s > # Error in aggregate.data.frame(mf[1L], mf[-1L], FUN = FUN, ...) :
308s > #   no rows to aggregate
308s > 
308s > # - "Ensure we get error if we try to do something stupid..." ------------------
308s > 
308s > try(
308s +   withRestarts(
308s +     unitize("_helper/unitizers/trivial.R"), 
308s +     unitizerInteractiveFail = function() NULL
308s +   )
308s + )
308s 
308s Warning in check_call_stack() :
308s   It appears you are running unitizer inside an error handling function such as 
308s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
308s couraged as it may cause unpredictable behavior from unitizer in the event tests
308s produce conditions / errors.  We strongly recommend you re-run your tests 
308s outside of such handling functions.
308s Error in check_call_stack() : 
308s   "unitizerInteractiveFail" restart is already defined; unitizer relies on this 
308s restart to manage evaluation so unitizer will not run if it is defined outside 
308s of `unitize`.  If you did not define this restart contact maintainer.
308s > 
308s > 
308s PASS
308s Begin testing t-ischecks.R
309s 
309s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
309s Copyright (C) 2024 The R Foundation for Statistical Computing
309s Platform: arm-unknown-linux-gnueabihf (32-bit)
309s 
309s R is free software and comes with ABSOLUTELY NO WARRANTY.
309s You are welcome to redistribute it under certain conditions.
309s Type 'license()' or 'licence()' for distribution details.
309s 
309s R is a collaborative project with many contributors.
309s Type 'contributors()' for more information and
309s 'citation()' on how to cite R or R packages in publications.
309s 
309s Type 'demo()' for some demos, 'help()' for on-line help, or
309s 'help.start()' for an HTML browser interface to help.
309s Type 'q()' to quit R.
309s 
309s > source(file.path("_helper", "init.R"))
309s > # - "int.pos" ------------------------------------------------------------------
309s > 
309s > unitizer:::is.int.pos.1L(c(1, 2, 3))  # FALSE
309s [1] FALSE
309s > unitizer:::is.int.pos.1L(1)
309s [1] TRUE
309s > unitizer:::is.int.pos.1L(1)
309s [1] TRUE
309s > unitizer:::is.int.pos.1L(-1)           # FALSE
309s [1] FALSE
309s > unitizer:::is.int.pos.1L(NA_integer_)  # FALSE
309s [1] FALSE
309s > unitizer:::is.int.pos.2L(1:2)
309s [1] TRUE
309s > unitizer:::is.int.pos.2L(c(1, 2))
309s [1] TRUE
309s > 
309s > # - "is.valid_two_arg" ---------------------------------------------------------
309s > 
309s > f1 <- function(x, y) NULL
309s > f2 <- function(...) NULL
309s > f3 <- function(x, ...) NULL
309s > f4 <- function(x, y, z) NULL
309s > f5 <- function(x, y, z = 3) NULL
309s > f6 <- function(x) NULL
309s > unitizer:::is.two_arg_fun(f1)
309s [1] TRUE
309s > unitizer:::is.two_arg_fun(f2)
309s [1] TRUE
309s > unitizer:::is.two_arg_fun(f3)
309s [1] TRUE
309s > unitizer:::is.two_arg_fun(f4)
309s [1] "cannot have any non-optional arguments other than first two"
309s > unitizer:::is.two_arg_fun(f5)
309s [1] TRUE
309s > unitizer:::is.two_arg_fun(f6)
309s [1] "does not have at least two arguments"
309s > unitizer:::is.two_arg_fun(1)
309s [1] "is not a function"
309s > 
309s > # - "is.valid_capt_setting" ----------------------------------------------------
309s > 
309s > capt.test <- unitizer:::is.valid_capt_setting(c(T, T))
309s | value must be logical(2L) containing TRUE 
309s | / FALSE and with names `c("output", "message")
309s 
309s > capt.test
309s [1] FALSE
309s > 
309s PASS
309s Begin testing t-item.R
309s 
309s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
309s Copyright (C) 2024 The R Foundation for Statistical Computing
309s Platform: arm-unknown-linux-gnueabihf (32-bit)
309s 
309s R is free software and comes with ABSOLUTELY NO WARRANTY.
309s You are welcome to redistribute it under certain conditions.
309s Type 'license()' or 'licence()' for distribution details.
309s 
309s R is a collaborative project with many contributors.
309s Type 'contributors()' for more information and
309s 'citation()' on how to cite R or R packages in publications.
309s 
309s Type 'demo()' for some demos, 'help()' for on-line help, or
309s 'help.start()' for an HTML browser interface to help.
309s Type 'q()' to quit R.
309s 
309s > source(file.path("_helper", "init.R"))
310s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("item")
310s > 
310s > options(unitizer.color = FALSE)
310s > 
310s > # These tests are intended to cover all the functions/classes/methods in:
310s > # - item.R
310s > # - item.sub.R
310s > # - test_eval.R     # indirectly
310s > # - heal.R
310s > # - unitizer.R
310s > # Basically everything that can be tested non-interactively
310s > # Helper funs
310s > 
310s > callDep <- function(x) paste0(deparse(x@call, width.cutoff = 500),
310s +     collapse = "")
310s > lsObjs <- function(x) paste0(x@ls$names, x@ls$status, collapse = ", ")
310s > lsStat <- function(x) x@ls$status
310s > lsInv <- function(x) isTRUE(attr(x@ls, "invalid"))
310s > # Get started
310s > 
310s > new.exps <- expression(
310s +   1 + 1,
310s +   a <- 54,     # keep
310s +   b <- 38,     # keep
310s +   a + b,
310s +   e <- 5 * a,  # keep
310s +   a ^ 2,       # Keep
310s +   f <- e * a,
310s +   matrix(rep(f, 20))  # keep
310s + )
310s > ref.exps <- expression(
310s +   1 + 1,
310s +   a <- 54,
310s +   b <- 38,
310s +   a + b,
310s +   e <- 5 * a,
310s +   e ^ 3
310s + )
310s > 
310s > Sys.sleep(0.2)
310s > my.unitizer <- new("unitizer", id = 1, zero.env = new.env())
310s > # add ref.exps as new items
310s > coi(my.unitizer <- my.unitizer + ref.exps)
310s > my.unitizer2 <- new("unitizer", id = 2, zero.env = new.env())
310s > # now convert them to reference items
310s > coi(my.unitizer2 <- my.unitizer2 + my.unitizer@items.new)
310s > # now test against new.exps
310s > coi(my.unitizer2 <- my.unitizer2 + new.exps)
310s > 
310s > # - "item funs" ----------------------------------------------------------------
310s > 
310s > item <- my.unitizer@items.new[[1L]]
310s > unitizer:::itemType(item)
310s [1] "new"
310s > try(unitizer:::itemType(item) <- "asdfasd")
310s Error in unitizer:::`itemType<-`(`*tmp*`, value = "asdfasd") : 
310s   Argument `value` must be in c("new", "reference")
310s > unitizer:::itemType(item) <- "reference"
310s > unitizer:::itemType(item)
310s [1] "reference"
310s > try(unitizer:::itemsType(my.unitizer@items.new) <- as.character(1:1000))
310s Error in unitizer:::`itemsType<-`(`*tmp*`, value = c("1", "2", "3", "4",  : 
310s   Argument `value` must be length 1L or have same length as argument `x`
310s > try(item$booboo)
310s Error in .local(x, i, j, ...) : 
310s   Argument `name` must be in c("call", "state", "value", "conditions", "output", "message", "aborted")
310s > 
310s > # - "unitizer creation worked as expected" -------------------------------------
310s > 
310s > validObject(my.unitizer, complete = TRUE)
310s [1] TRUE
310s > all.equal(capture.output(show(my.unitizer@items.new[[1L]])), rds(100))
310s [1] TRUE
310s > identical(length(my.unitizer2), length(new.exps))
310s [1] TRUE
310s > identical(length(my.unitizer2@items.new), length(new.exps))
310s [1] TRUE
310s > identical(length(my.unitizer2@items.ref), length(ref.exps))
310s [1] TRUE
310s > all.equal(
310s +   as.expression(
310s +     lapply(unitizer:::as.list(my.unitizer2@items.new), slot, "call")
310s +   ),
310s +   new.exps
310s + )
310s [1] TRUE
310s > all.equal(
310s +   as.expression(
310s +     lapply(unitizer:::as.list(my.unitizer2@items.ref), slot, "call")
310s +   ),
310s +   ref.exps
310s + )
310s [1] TRUE
310s > vals <- lapply(
310s +   unitizer:::as.list(my.unitizer2@items.new), function(x) x@data@value[[1L]]
310s + )
310s > vals.ign <- unitizer:::ignored(my.unitizer2@items.new)
310s > all.equal(vals[!vals.ign], lapply(new.exps, eval)[!vals.ign])
310s [1] TRUE
310s > all(vapply(vals[vals.ign], is, logical(1L), "unitizerDummy"))
310s [1] TRUE
310s > 
310s > vals <- lapply(
310s +   unitizer:::as.list(my.unitizer2@items.ref), function(x) x@data@value[[1L]]
310s + )
310s > vals.ign <- unitizer:::ignored(my.unitizer2@items.ref)
310s > all.equal(vals[!vals.ign], lapply(ref.exps, eval)[!vals.ign])
310s [1] TRUE
310s > all(vapply(vals[vals.ign], is, logical(1L), "unitizerDummy"))
310s [1] TRUE
310s > my.unitizer2@items.new.map
310s [1]  1  2  3  4  5 NA NA NA
310s > my.unitizer2@items.ref.map
310s [1]  1  2  3  4  5 NA
310s > my.unitizer2@tests.fail
310s [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE
310s > my.unitizer2@tests.status
310s [1] Pass Pass Pass Pass Pass New  New  New 
310s Levels: Pass Fail New Deleted Error
310s > my.unitizer2@section.map
310s [1] 1 1 1 1 1 1 1 1
310s > unitizer:::ignored(my.unitizer2@items.new)
310s [1] FALSE  TRUE  TRUE FALSE  TRUE FALSE  TRUE FALSE
310s > unitizer:::ignored(my.unitizer2@items.ref)
310s [1] FALSE  TRUE  TRUE FALSE  TRUE FALSE
310s > 
310s > # - "Size Measurement works" ---------------------------------------------------
310s > 
310s > # Used to produce warnings because the same base.env was used for every
310s > # unitizer because it was created on package load as part of the S4 class
310s > # definition instead of in "initialize", so any time we instantiated more
310s > # than one object they all shared the same environment, causing issues with
310s > # saveRDS
310s > x <- unitizer:::sizeUntz(my.unitizer2)
310s > is.matrix(x) && is.numeric(x)
310s [1] TRUE
310s > colnames(x)
310s [1] "size" "rds" 
310s > 
310s > # - "Environment healing works" ------------------------------------------------
310s > 
310s > items.mixed <- my.unitizer2@items.new[4:5] + my.unitizer2@items.ref[[1]] +
310s +     my.unitizer2@items.new[c(2, 6, 8)]
310s > items.sorted <- unitizer:::healEnvs(items.mixed, my.unitizer2)
310s > env.anc <- lapply(unitizer:::as.list(items.sorted), function(x) rev(unitizer:::env_ancestry(x@env,
310s +     my.unitizer2@base.env)))
310s > max.len <- max(vapply(env.anc, length, 1L))
310s > env.anc.2 <- lapply(env.anc, function(x) {
310s +     length(x) <- max.len
310s +     x
310s + })
310s > env.anc.df <- as.data.frame(env.anc.2, stringsAsFactors = FALSE)
310s > # Here only the first item is reference, all others
310s > length(unique(unlist(env.anc.df[2, ])))
310s [1] 1
310s > all(
310s +   apply(
310s +     env.anc.df[-(1:2), -1], 1,
310s +     function(x) length(unique(Filter(Negate(is.na), x)))
310s +   ) == 1L
310s + )
310s [1] TRUE
310s > # First item is reference, all others are new
310s > unitizer:::itemsType(items.sorted)
310s [1] "reference" "new"       "new"       "new"       "new"       "new"      
310s [7] "new"       "new"      
310s > # Expected order of ids
310s > vapply(unitizer:::as.list(items.sorted), function(x) x@id, integer(1L))
310s [1] 1 2 3 4 5 6 7 8
310s > lapply(unitizer:::as.list(items.sorted), function(x) x@ls$names)
310s [[1]]
310s character(0)
310s 
310s [[2]]
310s character(0)
310s 
310s [[3]]
310s character(0)
310s 
310s [[4]]
310s [1] "a" "b"
310s 
310s [[5]]
310s character(0)
310s 
310s [[6]]
310s [1] "a" "b" "e"
310s 
310s [[7]]
310s character(0)
310s 
310s [[8]]
310s [1] "a" "b" "e" "f"
310s 
310s > unique(unlist(lapply(unitizer:::as.list(items.sorted), function(x) x@ls$status)))
310s [1] ""
310s > # Tests with conditions
310s > 
310s > # - "Items with conditions" ----------------------------------------------------
310s > 
310s > my_fun <- function() {
310s +     warning("hello")
310s +     25
310s + }
310s > ref.exps1a <- expression(stop("boom"), my_fun())
310s > my.unitizer1a <- new("unitizer", id = 100, zero.env = new.env())
310s > # add ref.exps as new items
310s > coi(my.unitizer1a <- my.unitizer1a + ref.exps1a)
310s > 
310s > all.equal(capture.output(show(my.unitizer1a@items.new[[1L]])), rds(200))
310s [1] TRUE
310s > all.equal(capture.output(show(my.unitizer1a@items.new[[2L]])), rds(300))
310s [1] TRUE
310s > all.equal(
310s +   capture.output(show(my.unitizer1a@items.new[[1L]]@data@conditions)), rds(400)
310s + )
310s [1] TRUE
310s > # - "Environment healing works 2" ----------------------------------------------
310s > 
310s > # Stars highlight items we are selecting, but keep in mind that unitizer only
310s > # cares about non ignored tests, and that the selection status of ignored test
310s > # has nothing to do with what we end up with wrt to ignored tests
310s > 
310s > new.exps2 <- expression(
310s +   1 + 1,                   #  1 *
310s +   a <- 54,                 #  2
310s +   b <- runif(5),           #  3
310s +   howdy <- "yowser",       #  4 *
310s +   a + b,                   #  5 *
310s +   e <- 5 * a,              #  6
310s +   a ^ 2,                   #  7
310s +   f <- e * a,              #  8
310s +   matrix(rep(f, 20))       #  9 *
310s + )
310s > ref.exps2 <- expression(
310s +   1 + 1,                   #  1
310s +   a <- 54,                 #  2
310s +   b <- runif(5),           #  3 *
310s +   25 + 3,                  #  4
310s +   q <- b ^ 2 / a,          #  5 *
310s +   a + b,                   #  6
310s +   z <- w <- list(1, 2, 3), #  7
310s +   Reduce(`+`, z),          #  8 * Doesn't exist, should connect back to `a + b`
310s +   e <- 5 * a,              #  9
310s +   e ^ 3,                   # 10 *
310s +   e * a                    # 11 *
310s + )
310s > 
310s > # Note that healEnvs modifies objects that contain environments, and as such
310s > # you won't get the same result if you run this function twice, so don't be
310s > # surprised if tests fail in those circumstances
310s > my.unitizer3 <- new("unitizer", id = 1, zero.env = new.env())
310s > # add ref.exps as new items
310s > coi(my.unitizer3 <- my.unitizer3 + ref.exps2)
310s > my.unitizer4 <- new("unitizer", id = 2, zero.env = new.env())
310s > # now convert them to reference items
310s > coi(my.unitizer4 <- my.unitizer4 + my.unitizer3@items.new)
310s > # now test against new.exps
310s > coi(my.unitizer4 <- my.unitizer4 + new.exps2)
310s > coi(
310s +   items.mixed2 <- my.unitizer4@items.ref[c(8, 10, 3, 5, 11)] +
310s +     my.unitizer4@items.new[c(1, 4, 5, 9)]
310s + )
310s > items.sorted2 <- unitizer:::healEnvs(items.mixed2, my.unitizer4)
310s > 
310s > env.anc <- lapply(unitizer:::as.list(items.sorted2), function(x) rev(unitizer:::env_ancestry(x@env,
310s +     my.unitizer4@base.env)))
310s > max.len <- max(vapply(env.anc, length, 1L))
310s > env.anc.2 <- lapply(env.anc, function(x) {
310s +     length(x) <- max.len
310s +     x
310s + })
310s > # oldest ancestor the same
310s > env.anc.df <- as.data.frame(env.anc.2, stringsAsFactors = FALSE)
310s > length(unique(unname(unlist(env.anc.df[1, ]))))  # 1
310s [1] 1
310s > # "base.env should be unitizer env")
310s > identical(
310s +   env.anc.df[1, 1], unitizer:::env_name(my.unitizer4@base.env)
310s + )
310s [1] TRUE
310s > # "all tests should also have another sub base.env")
310s > length(unique(unlist(env.anc.df[2, ]))) == 1L
310s [1] TRUE
310s > # "and it should be the items.ref here")
310s > identical(
310s +   env.anc.df[2, 1], unitizer:::env_name(my.unitizer4@items.ref@base.env)
310s + )
310s [1] TRUE
310s > items <- items.sorted2
310s > items.lst <- unitizer:::as.list(items)
310s > # "new items should all have normal status",
310s > heal.info <- cbind(
310s +   type = unitizer:::itemsType(items), ignored = unitizer:::ignored(items),
310s +   id = vapply(items.lst, slot, 1L, "id"),
310s +   call = vapply(items.lst, callDep, ""),
310s +   ls = vapply(items.lst, lsObjs, ""),
310s +   ls.invalid = vapply(items.lst, lsInv, TRUE)
310s + )
310s > # ""
310s > unique(unlist(lapply(items.lst[unitizer:::itemsType(items) == "new"], lsStat)))
310s [1] ""
310s > # "Reference tests should have no ls data",
310s > unique(vapply(items.lst[unitizer:::ignored(items)], lsObjs, ""))
310s [1] ""
310s > all(vapply(items.lst[unitizer:::ignored(items)], lsInv, logical(1L)))
310s [1] TRUE
310s > 
310s > # - "ls works" -----------------------------------------------------------------
310s > 
310s > my.unitizer5 <- new("unitizer", id = 2, zero.env = new.env())
310s > # now add back our composite elements as references
310s > coi(my.unitizer5 <- my.unitizer5 + items.sorted2)
310s > # and new items
310s > coi(my.unitizer5 <- my.unitizer5 + new.exps2)
310s > 
310s > # This is an ignored test, so there will be some problems
310s > env.val <- new.env(parent = my.unitizer5@items.new[[3]]@env)
310s > env.eval <- new.env(parent = env.val)
310s > assign(".NEW", my.unitizer5@items.new[[3]], env.val)
310s > assign(".new", my.unitizer5@items.new[[3]]@data@value[[1L]],
310s +     env.val)
310s > assign(".REF", my.unitizer5@items.ref[[my.unitizer5@items.new.map[[3]]]],
310s +     env.val)
310s > assign(".ref", my.unitizer5@items.ref[[my.unitizer5@items.new.map[[3]]]]@data@value[[1L]],
310s +     env.val)
310s > ls.res <- evalq(unitizer:::unitizer_ls(), env.eval)  # warn
310s Warning in unitizer:::unitizer_ls() :
310s   The ls output for `.ref` is invalid.  This may be because you had corrupted environment chains that had to be repaired. Re-generating the `unitizer` with `unitize(..., force.update=TRUE)` should fix the problem.  If it persists, please contact maintainer.
310s > # Reference tests won't show up since they were nuked by `healEnvs`
310s > all.equal(ls.res, rds(500))
310s [1] TRUE
310s > # These are normal tests so should work
310s > env.val <- new.env(parent = my.unitizer5@items.new[[9]]@env)
310s > env.eval <- new.env(parent = env.val)
310s > assign(".NEW", my.unitizer5@items.new[[9]], env.val)
310s > assign(".new", my.unitizer5@items.new[[9]]@data@value[[1L]],
310s +     env.val)
310s > assign(".REF", my.unitizer5@items.ref[[my.unitizer5@items.new.map[[9]]]],
310s +     env.val)
310s > assign(".ref", my.unitizer5@items.ref[[my.unitizer5@items.new.map[[9]]]]@data@value[[1L]],
310s +     env.val)
310s > all.equal(evalq(unitizer:::unitizer_ls(), env.eval),
310s +     rds(600))
310s [1] TRUE
310s > all.equal(capture.output(print(evalq(unitizer:::unitizer_ls(),
310s +     env.eval))), rds(700))
310s [1] TRUE
310s > 
310s > # - "Environment Healing Works #3" ---------------------------------------------
310s > #
310s > # Main difference to previous versions is that we're testing that moving the
310s > # order of tests around between ref and new still works
310s > #
310s > # Test that reference tests moving around doesn't cause major issues
310s > 
310s > new.exps6 <- expression(
310s +   1 + 1,                #  1   *
310s +   a <- 54,              #  2
310s +   b <- runif(5),        #  3
310s +   howdy <- "yowser",    #  4
310s +   a + b,                #  5
310s +   e <- 5 * a,           #  6
310s +   a ^ 2,                #  7   *
310s +   f <- 25,              #  8   *
310s +   matrix(rep(f, 20))    #  9
310s + )
310s > ref.exps6 <- expression(
310s +   1 + 1,                #  1
310s +   a <- 54,              #  2
310s +   f <- 25,              #  3
310s +   matrix(rep(f, 20)),   #  4   *
310s +   b <- runif(5),        #  5
310s +   boomboom <- "boo",    #  6
310s +   a + b,                #  7   *
310s +   a + b + f,            #  8
310s +   e <- 5 * a,           #  9
310s +   a ^ 2                 # 10
310s + )
310s > my.unitizer10 <- new("unitizer", id = 1, zero.env = new.env())
310s > # add ref.exps as new items
310s > coi(my.unitizer10 <- my.unitizer10 + ref.exps6)
310s > my.unitizer11 <- new("unitizer", id = 2, zero.env = new.env())
310s > # now convert them to reference items
310s > coi(my.unitizer11 <- my.unitizer11 + my.unitizer10@items.new)
310s > # now test against new.exps
310s > coi(my.unitizer11 <- my.unitizer11 + new.exps6)
311s > items.mixed3 <- my.unitizer11@items.ref[c(4, 7)] +
311s +   my.unitizer11@items.new[c(1, 7, 8)]
311s > items.sorted3 <- unitizer:::healEnvs(items.mixed3, my.unitizer11)
311s > 
311s > # Both reference tests get appended to item #1, which means among other things
311s > # that for the second refernce test, the `a` object is absent (but `b` is
311s > # present because it gets sucked in by virtue of being an ignored test just
311s > # ahead of it)
311s > items <- items.sorted3
311s > items.lst <- unitizer:::as.list(items)
311s > cbind(
311s +   type = unitizer:::itemsType(items), ignored = unitizer:::ignored(items),
311s +   id = vapply(items.lst, slot, 1L, "id"),
311s +   call = vapply(items.lst, callDep, ""),
311s +   ls = vapply(items.lst, lsObjs, ""),
311s +   ls.invalid = vapply(items.lst, lsInv, TRUE)
311s + )
311s       type        ignored id  call                  ls                   
311s  [1,] "new"       "FALSE" "1" "1 + 1"               ""                   
311s  [2,] "reference" "TRUE"  "2" "a <- 54"             ""                   
311s  [3,] "reference" "TRUE"  "3" "f <- 25"             ""                   
311s  [4,] "reference" "FALSE" "4" "matrix(rep(f, 20))"  "a, f"               
311s  [5,] "reference" "TRUE"  "5" "b <- runif(5)"       ""                   
311s  [6,] "reference" "TRUE"  "6" "boomboom <- \"boo\"" ""                   
311s  [7,] "reference" "FALSE" "7" "a + b"               "a*, b, boomboom, f*"
311s  [8,] "new"       "TRUE"  "6" "e <- 5 * a"          ""                   
311s  [9,] "new"       "FALSE" "7" "a^2"                 "a, b, e, howdy"     
311s       ls.invalid
311s  [1,] "FALSE"   
311s  [2,] "TRUE"    
311s  [3,] "TRUE"    
311s  [4,] "FALSE"   
311s  [5,] "TRUE"    
311s  [6,] "TRUE"    
311s  [7,] "FALSE"   
311s  [8,] "TRUE"    
311s  [9,] "FALSE"   
311s > # - "No circular environment references" ---------------------------------------
311s > 
311s > # This is to test for issue #2, which resulted in a self referential environment
311s > # in the stored items.  The following code used to fail:
311s > new.exps3 <- expression(1 + 1, a <- 54, b <- 5, 2 + 2, runif(1))
311s > ref.exps3 <- expression(1 + 1, a <- 54, 2 + 2, runif(1))
311s > my.unitizer6 <- new("unitizer", id = 1, zero.env = new.env())
311s > # add ref.exps as new items
311s > coi(my.unitizer6 <- my.unitizer6 + ref.exps3)
311s > my.unitizer7 <- new("unitizer", id = 2, zero.env = new.env())
311s > # now convert them to reference items
311s > coi(my.unitizer7 <- my.unitizer7 + my.unitizer6@items.new)
311s > # now test against new.exps
311s > coi(my.unitizer7 <- my.unitizer7 + new.exps3)
311s > # Note this doesn't test that there are no circular references, only that what
311s > # used to fail no longer fails.
311s > 
311s > cbind(my.unitizer7@tests.new, my.unitizer7@tests.result)
311s            value conditions output message aborted
311s [1,] FALSE  TRUE       TRUE   TRUE    TRUE    TRUE
311s [2,] FALSE  TRUE       TRUE   TRUE    TRUE    TRUE
311s [3,]  TRUE FALSE      FALSE  FALSE   FALSE   FALSE
311s [4,] FALSE  TRUE       TRUE   TRUE    TRUE    TRUE
311s [5,] FALSE FALSE       TRUE   TRUE    TRUE    TRUE
311s > 
311s > # - "testFuns" -----------------------------------------------------------------
311s > 
311s > # Error objects
311s > 
311s > # these two should just work fine
311s > is(new("testFuns", output = all.equal, value = function(x, y) TRUE), "testFuns")
311s [1] TRUE
311s > is(new("testFuns"), "testFuns")
311s [1] TRUE
311s > try(new("testFuns", output = all.equal, value = function(x, y, z) TRUE))
311s Error in validObject(.Object) : 
311s   invalid class "unitizerItemTestFun" object: Slot `@fun` must be a function with the first two parameters non-optional and all others optional (cannot have any non-optional arguments other than first two).
311s > # this should work too now, since technically has two args
311s > is(
311s +   new("testFuns", output = all.equal, value = function(x, y = 1, z = 1) TRUE),
311s +   "testFuns"
311s + )
311s [1] TRUE
311s > try(new("testFuns", cabbage = all.equal))
311s Error in initialize(value, ...) : 
311s   Can't initialize invalid slots "cabbage"
311s > 
311s > # - "Misc" ---------------------------------------------------------------------
311s > 
311s > new.exps4 <- expression(a <- function() b(), b <- function() TRUE, a())
311s > my.unitizer8 <- new("unitizer", id = 3, zero.env = new.env())
311s > new.exps5 <- expression(a <- function() b(), NULL, b <- function() TRUE, a())
311s > my.unitizer9 <- new("unitizer", id = 4, zero.env = new.env())
311s > coi(x <- my.unitizer9 + new.exps5)
311s > 
311s > local({
311s +   fun <- function() quote(stop("This error should not be thrown"))
311s +   is(
311s +     new(
311s +       "unitizerItem", value = fun(), call = quote(fun()),
311s +       env = sys.frame(sys.parent() + 1L)
311s +     ),
311s +     "unitizerItem"
311s +   )
311s + })
311s [1] TRUE
311s > # Nested environment hand waving can break down under certain circumstances
311s > # this first one should work because there are no tests until after all
311s > # the pieces necessary to run `a()` are defined:
311s > coi(res <- my.unitizer8 + new.exps4)
311s > is(res, "unitizer")
311s [1] TRUE
311s > # this should break because the NULL forces `b` to be stored in a different
311s > # environment to `a`; note: funky error message matching because in
311s > # at least some versions of rdevel reported fun name seems to change
311s > # (possibly related to level 3 bytecode)
311s > # could not find fun
311s > x@items.new[[4]]@data@message[[1]]
311s [1] "Error in b() : could not find function \"b\"\n"
311s > 
311s > # - "Comparison Function Errors" -----------------------------------------------
311s > 
311s > exps <- expression(fun <- function(x, y) warning("not gonna work"),
311s +     unitizer_sect(compare = fun, expr = {
311s +         1 + 1
311s +     }))
311s > my.unitizer <- new("unitizer", id = 25, zero.env = new.env())
311s > # add ref.exps as new items
311s > coi(my.unitizer <- my.unitizer + exps)
311s > coi(my.unitizer2 <- new("unitizer", id = 26, zero.env = new.env()) +
311s +     my.unitizer@items.new)
311s > # warn: not gonna work
311s > coi(my.unitizer2 <- my.unitizer2 + exps)
311s Warning in close_and_clear(e1@global$cons) :
311s   Test comparison functions appear to have produced output, which should not happen (see `?unitizer_sect` for more details).  If you did not provide custom testing functions, contact maintainer.  First 50 lines follow:
311s Warning in fun(2, 2) : not gonna work
311s 
311s > as.character(my.unitizer2@tests.status)
311s [1] "Pass"  "Error"
311s > my.unitizer2@tests.errorDetails[[2]]@value@value
311s [1] "comparison function `fun` signaled a condition of class `c(\"simpleWarning\", \"warning\", \"condition\")`, with message \"not gonna work\" and call `fun(2, 2)`."
311s > 
311s > # - "Language Objects Tested Properly" -----------------------------------------
311s > 
311s > exps <- expression(quote(x), quote(x + y), quote(identity(x)),
311s +     expression(1 + y), quote(expression(1 + y)))
311s > my.unitizer <- new("unitizer", id = 27, zero.env = new.env())
311s > # add ref.exps as new items
311s > coi(my.unitizer <- my.unitizer + exps)
311s > coi(my.unitizer2 <- new("unitizer", id = 28, zero.env = new.env()) +
311s +     my.unitizer@items.new)
311s > coi(my.unitizer2 <- my.unitizer2 + exps)
311s > # This used to error b/c expressions returning unevaluated calls/symbols were
311s > # not compared as such (they were evaluated)
311s > as.character(my.unitizer2@tests.status)
311s [1] "Pass" "Pass" "Pass" "Pass" "Pass"
311s > 
311s > # - "Test Fun Captured Properly" -----------------------------------------------
311s > 
311s > new("unitizerItemTestFun", fun = identical)@fun.name
311s [1] "identical"
311s > 
311s > 
311s PASS
311s Begin testing t-list.R
311s 
311s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
311s Copyright (C) 2024 The R Foundation for Statistical Computing
311s Platform: arm-unknown-linux-gnueabihf (32-bit)
311s 
311s R is free software and comes with ABSOLUTELY NO WARRANTY.
311s You are welcome to redistribute it under certain conditions.
311s Type 'license()' or 'licence()' for distribution details.
311s 
311s R is a collaborative project with many contributors.
311s Type 'contributors()' for more information and
311s 'citation()' on how to cite R or R packages in publications.
311s 
311s Type 'demo()' for some demos, 'help()' for on-line help, or
311s 'help.start()' for an HTML browser interface to help.
311s Type 'q()' to quit R.
311s 
311s > source(file.path("_helper", "init.R"))
311s > 
311s > lst <- new("unitizerList")
311s > 
311s > # - "unitizerList basic tests" -------------------------------------------------
311s > 
311s > length(lst) == 0L
311s [1] TRUE
311s > is(lst <- unitizer:::append(lst, 5), "unitizerList")
311s [1] TRUE
311s > length(lst) == 1L
311s [1] TRUE
311s > is(
311s +   lst <- unitizer:::append(
311s +     lst, list("booyah", list(1:3), matrix(1:9, nrow = 3))
311s +   ), "unitizerList"
311s + )
311s [1] TRUE
311s > length(lst) == 4L
311s [1] TRUE
311s > is(lst[3L], "unitizerList")
311s [1] TRUE
311s > is(lst[[3L]], "list")
311s [1] TRUE
311s > lst <- unitizer:::append(lst, list(data.frame(a = letters[1:3])), 2L)
311s > is(lst[[3L]], "data.frame")
311s [1] TRUE
311s > length(lst[1:4]) == 4L
311s [1] TRUE
311s > lst[[4L]] <- "boo"
311s > is(lst[[4L]], "character")
311s [1] TRUE
311s > lst[4L:5L] <- letters[1:2]
311s > 
311s > c(lst[[4L]], lst[[5L]])
311s [1] "a" "b"
311s > lst[[4L]]
311s [1] "a"
311s > 
311s > is(unitizer:::as.list(lst), "list")
311s [1] TRUE
311s > length(unitizer:::as.list(lst)) == 5L
311s [1] TRUE
311s > is(unitizer:::as.expression(lst), "expression")
311s [1] TRUE
311s > 
311s > try(unitizer:::getItem(lst))  # error
311s Error in .local(x, ...) : 
311s   Internal pointer for `x` not initialized; initialize with `nextItem`
311s > lst <- unitizer:::nextItem(lst)
311s > unitizer:::getItem(lst)
311s [1] 5
311s > lst <- unitizer:::nextItem(lst)
311s > unitizer:::getItem(lst)
311s [1] "booyah"
311s > lst <- unitizer:::prevItem(lst)
311s > unitizer:::getItem(lst)
311s [1] 5
311s > lst <<- lst  # leftover from testthat testing?
311s > 
311s > # - "unitizerList pointer seeking" ---------------------------------------------
311s > 
311s > for (i in 1:10) lst <- unitizer:::nextItem(lst)
311s > try(unitizer:::getItem(lst))
311s Error in .local(x, ...) : Internal pointer for `x` is corrupted
311s > unitizer:::done(lst)
311s [1] TRUE
311s > is(lst <- unitizer:::reset(lst, "back"), "unitizerList")
311s [1] TRUE
311s > try(unitizer:::reset(lst, letters))
311s Error in .local(x, ...) : 
311s   Argument `position` must be `NULL`, or "front" or "back"
311s > try(unitizer:::reset(lst, NA_character_))
311s Error in .local(x, ...) : 
311s   Argument `position` must be `NULL`, or "front" or "back"
311s > try(unitizer:::getItem(lst))
311s Error in .local(x, ...) : 
311s   Internal pointer for `x` not initialized; initialize with `prevItem`
311s > lst <- unitizer:::prevItem(lst)
311s > unitizer:::getItem(lst) == "b"
311s [1] TRUE
311s > while (!unitizer:::done(lst)) {
311s +     item <- unitizer:::getItem(lst)
311s +     lst <- unitizer:::prevItem(lst)
311s + }
311s > item == 5L
311s [1] TRUE
311s > try(unitizer:::getItem(lst))
311s Error in .local(x, ...) : 
311s   Internal pointer for `x` outside of range for `x`; test for this condition with `done`, or reset with `reset`
311s > withCallingHandlers(
311s +   lst[[4]] <- "new value",
311s +   warning = function() stop("A Warning!")
311s + )
311s > 
311s > for (i in 1:5) lst <- unitizer:::nextItem(lst)
311s > lst@.pointer
311s [1] 5
311s > 
311s > # - "unitizerList value replacement and pointer adjustments" -------------------
311s > 
311s > lst[[4]] <- NULL
311s > lst@.pointer
311s [1] 4
311s > unitizer:::reset(lst, "back")
311s An object of class "unitizerList"
311s Slot ".items":
311s [[1]]
311s [1] 5
311s 
311s [[2]]
311s [1] "booyah"
311s 
311s [[3]]
311s   a
311s 1 a
311s 2 b
311s 3 c
311s 
311s [[4]]
311s [1] "b"
311s 
311s 
311s Slot ".pointer":
311s [1] 5
311s 
311s Slot ".seek.fwd":
311s [1] FALSE
311s 
311s > lst.len <- length(lst)
311s > identical(lst@.pointer, lst.len)
311s [1] TRUE
311s > lst[2:3] <- letters[1:2]
311s > identical(lst@.pointer, lst.len)
311s [1] TRUE
311s > lst[2:3] <- list(NULL, NULL)
311s > identical(lst@.pointer, lst.len)
311s [1] TRUE
311s > lst[2:3] <- NULL
311s > identical(lst@.pointer, lst.len - 2L)
311s [1] TRUE
311s > 
311s > lst <- unitizer:::reset(lst, "front")
311s > for (i in 1:2) lst <- unitizer:::nextItem(lst)
311s > curr.point <- lst@.pointer
311s > lst[[3]] <- NULL
311s > identical(curr.point, lst@.pointer)
311s [1] TRUE
311s > lst <- unitizer:::append(lst, list(5, 6, "blaskdjf"), 1L)
311s > identical(curr.point + 3L, lst@.pointer)
311s [1] TRUE
311s > lst <- unitizer:::append(lst, list(matrix(1:9, nrow = 3)), 5L)
311s > identical(curr.point + 3L, lst@.pointer)
311s [1] TRUE
311s > 
311s > # - "Append Factors Works" -----------------------------------------------------
311s > 
311s > vec <- factor(letters[1:3], levels = letters)
311s > vec2 <- factor(letters[10:15], levels = letters)
311s > 
311s > all.equal(structure(c(1L, 2L, 3L, 10L, 11L, 12L, 13L, 14L,
311s +   15L), .Label = c("a", "b", "c", "d", "e", "f", "g", "h",
311s +   "i", "j", "k", "l", "m", "n", "o", "p", "q", "r", "s", "t",
311s +   "u", "v", "w", "x", "y", "z"), class = "factor"), append(vec,
311s +   vec2))
311s [1] TRUE
311s > all.equal(structure(c(1L, 2L, 10L, 11L, 12L, 13L, 14L, 15L,
311s +   3L), .Label = c("a", "b", "c", "d", "e", "f", "g", "h", "i",
311s +   "j", "k", "l", "m", "n", "o", "p", "q", "r", "s", "t", "u",
311s +   "v", "w", "x", "y", "z"), class = "factor"), append(vec,
311s +   vec2, 2))
311s [1] TRUE
311s > 
311s > all.equal(structure(c(10L, 11L, 12L, 13L, 1L, 2L, 3L, 14L,
311s +   15L), .Label = c("a", "b", "c", "d", "e", "f", "g", "h",
311s +   "i", "j", "k", "l", "m", "n", "o", "p", "q", "r", "s", "t",
311s +   "u", "v", "w", "x", "y", "z"), class = "factor"), append(vec2,
311s +   vec, 4))
311s [1] TRUE
311s > try(append(vec2, vec, 20))
311s Error in append(vec2, vec, 20) : 
311s   Argument after must be integer like between 0 and length(x)
311s > try(append(vec2, vec, -5))
311s Error in append(vec2, vec, -5) : 
311s   Argument after must be integer like between 0 and length(x)
311s > 
311s > # - "List coersion works even inside apply functions" --------------------------
311s > 
311s > ulist <- new("unitizerList", .items = list("a", 1, 2, "b"))
311s > identical(lapply(ulist, identity), ulist@.items)
311s [1] TRUE
311s > 
311s > # - "Errors" -------------------------------------------------------------------
311s > 
311s > setClass("uhtsdfoqiuerhzb", slots = c(a = "integer"))
311s > dummy <- new("uhtsdfoqiuerhzb", a = 1L)
311s > lst2 <- new("unitizerList", .items = list(1, 2, 3))
311s > try(append(lst2, 5, after = -1))
311s Error in append(lst2, 5, after = -1) : 
311s   Argument `after` must be a length 1 numeric greater than zero
311s > try(append(lst2, dummy))
311s Error in as.list.default(values) : 
311s   no method for coercing this S4 class to a vector
311s Error in append(lst2, dummy) : 
311s   Unable to coerce argument `values` to appropriate type; see previous errors for details.
311s > 
311s > lst3 <- new("unitizerList", .items = expression(1, 2, 3))
311s > try(append(lst3, dummy))
311s Error in as.expression.default(values) : 
311s   no method for coercing this S4 class to a vector
311s Error in append(lst3, dummy) : 
311s   Unable to coerce argument `values` to appropriate type; see previous errors for details.
311s > 
311s > # - "Set Names" ----------------------------------------------------------------
311s > 
311s > nlst <- new("unitizerList", .items = list(a = "a", b = "b"))
311s > names(nlst) <- toupper(names(nlst))
311s > as.list(nlst)
311s $A
311s [1] "a"
311s 
311s $B
311s [1] "b"
311s 
311s > 
311s > 
311s PASS
311s Begin testing t-misc.R
312s 
312s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
312s Copyright (C) 2024 The R Foundation for Statistical Computing
312s Platform: arm-unknown-linux-gnueabihf (32-bit)
312s 
312s R is free software and comes with ABSOLUTELY NO WARRANTY.
312s You are welcome to redistribute it under certain conditions.
312s Type 'license()' or 'licence()' for distribution details.
312s 
312s R is a collaborative project with many contributors.
312s Type 'contributors()' for more information and
312s 'citation()' on how to cite R or R packages in publications.
312s 
312s Type 'demo()' for some demos, 'help()' for on-line help, or
312s 'help.start()' for an HTML browser interface to help.
312s Type 'q()' to quit R.
312s 
312s > source(file.path("_helper", "init.R"))
312s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("refobjs")
312s > 
312s > # - "Text wrapping" ------------------------------------------------------------
312s > 
312s > var <- "humpty dumpty sat on a truck and had a big dump"
312s > # expect_true(all(nchar(unlist(unitizer:::text_wrap(var, 10))) <=
312s > writeLines(unlist(unitizer:::text_wrap(var, 10)))
312s humpty dum
312s pty sat on
312s  a truck a
312s nd had a b
312s ig dump
312s > all(nchar(unlist(unitizer:::text_wrap(var, 10))) <= 10)
312s [1] TRUE
312s > 
312s > var2 <- rep(var, 4)
312s > # expect_true(all(nchar(wrp <- unlist(unitizer:::text_wrap(var2,
312s > #     c(20, 15)))) <= 20) && length(wrp) == 14)
312s > writeLines(unlist(unitizer:::text_wrap(var2, c(20, 15))))
312s humpty dumpty sat on
312s  a truck and had a b
312s ig dump
312s humpty dumpty s
312s at on a truck a
312s nd had a big du
312s mp
312s humpty dumpty sat on
312s  a truck and had a b
312s ig dump
312s humpty dumpty s
312s at on a truck a
312s nd had a big du
312s mp
312s > all(nchar(wrp <- unlist(unitizer:::text_wrap(var2, c(20, 15)))) <=
312s +     20) && length(wrp) == 14
312s [1] TRUE
312s > 
312s > # - "Headers" ------------------------------------------------------------------
312s > 
312s > # these basically require visual inspection
312s > 
312s > unitizer:::H1("hello world")
312s +------------------------------------------------------------------------------+
312s | hello world                                                                  |
312s +------------------------------------------------------------------------------+
312s 
312s > unitizer:::H2("hello world")
312s = hello world ==================================================================
312s 
312s > unitizer:::H3("hello world")
312s - hello world ------------------------------------------------------------------
312s 
312s > 
312s > # cause an error
312s > try(print(unitizer:::H1(rep_len("hello world", 10))))
312s Error in header(x, 1L) : 
312s   Argument `x` must be a one length character vector
312s > 
312s > h.w.long <- paste0(rep_len("hello world", 10), collapse = " ")
312s > unitizer:::H1(h.w.long)
312s +------------------------------------------------------------------------------+
312s | hello world hello world hello world hello world hello world hello world      |
312s | hello world hello world hello world hello world                              |
312s +------------------------------------------------------------------------------+
312s 
312s > unitizer:::H2(h.w.long)
312s = hello world hello world hello world hello world hello world hello world h... =
312s 
312s > print(unitizer:::H2("No margin"), margin = "none") # no extra line below
312s = No margin ====================================================================
312s > 
312s > # - "Valid Names convert names to valid" ---------------------------------------
312s > 
312s > # expect_equal(unitizer:::valid_names("hello"), "hello")
312s > unitizer:::valid_names("hello")
312s [1] "hello"
312s > # expect_equal(unitizer:::valid_names(".hello"), ".hello")
312s > unitizer:::valid_names(".hello")
312s [1] ".hello"
312s > # expect_equal(unitizer:::valid_names("1hello"), "`1hello`")
312s > unitizer:::valid_names("1hello")
312s [1] "`1hello`"
312s > # expect_equal(unitizer:::valid_names("hello kitty"), "`hello kitty`")
312s > unitizer:::valid_names("hello kitty")
312s [1] "`hello kitty`"
312s > # expect_equal(unitizer:::valid_names("h3llo"), "`h3llo`")
312s > unitizer:::valid_names("h3llo")
312s [1] "`h3llo`"
312s > # expect_equal(unitizer:::valid_names("h_llo"), "h_llo")
312s > unitizer:::valid_names("h_llo")
312s [1] "h_llo"
312s > # expect_equal(unitizer:::valid_names("$hot"), "`$hot`")
312s > unitizer:::valid_names("$hot")
312s [1] "`$hot`"
312s > # expect_equal(unitizer:::valid_names("HELLO"), "HELLO")
312s > unitizer:::valid_names("HELLO")
312s [1] "HELLO"
312s > 
312s > # - "strtrunc" -----------------------------------------------------------------
312s > 
312s > # expect_equal(unitizer:::strtrunc("hollywood is for starlets",
312s > #     5), "ho...")
312s > unitizer:::strtrunc("hollywood is for starlets", 5)
312s [1] "ho..."
312s > # expect_error(unitizer:::strtrunc(5, "hollywood is for starlets"))
312s > try(unitizer:::strtrunc(5, "hollywood is for starlets"))
312s Error in unitizer:::strtrunc(5, "hollywood is for starlets") : 
312s   Argument `x` must be character
312s > 
312s > # - "environment name tools" ---------------------------------------------------
312s > 
312s > env1 <- new.env(parent = globalenv())
312s > env2 <- new.env(parent = env1)
312s > env3 <- new.env(parent = env2)
312s > env4 <- new.env(parent = env3)
312s > # expect_true(is.character(ename <- unitizer:::env_name(env3)) &&
312s > #     identical(length(ename), 1L))
312s > is.character(ename <- unitizer:::env_name(env3)) && identical(length(ename), 1L)
312s [1] TRUE
312s > # expect_true(is.character(envanc <- unitizer:::env_ancestry(env4)) &&
312s > #     identical(length(envanc), 5L) && identical(envanc[[5L]],
312s > #     "R_GlobalEnv"))
312s > is.character(envanc <- unitizer:::env_ancestry(env4)) &&
312s +   identical(length(envanc), 5L) && identical(envanc[[5L]], "R_GlobalEnv")
312s [1] TRUE
312s > 
312s > # - "deparse peek" -------------------------------------------------------------
312s > 
312s > expr1 <- quote(1 + 1 + 3)
312s > expr2 <- quote(for (i in 1:100) {
312s +     loop.val <- sample(1:1000, 200, replace = TRUE)
312s +     loop.val <- loop.val * 200/3000 * mean(runif(20000))
312s + })
312s > # expect_equal("1 + 1 + 3", unitizer:::deparse_peek(expr1, 20L))
312s > unitizer:::deparse_peek(expr1, 20L)
312s [1] "1 + 1 + 3"
312s > 
312s > # expect_error(unitizer:::deparse_peek(expr1, 3L))
312s > try(unitizer:::deparse_peek(expr1, 3L))
312s Error in unitizer:::deparse_peek(expr1, 3L) : 
312s   Argument `len` must be an integer greater than four
312s > # expect_equal("1 ...", unitizer:::deparse_peek(expr1, 5L))
312s > unitizer:::deparse_peek(expr1, 5L)
312s [1] "1 ..."
312s > 
312s > # expect_equal("for (i in 1:100) {    loop.val <- sam...", unitizer:::deparse_peek(expr2,
312s > #     40L))
312s > unitizer:::deparse_peek(expr2, 40L)
312s [1] "for (i in 1:100) {    loop.val <- sam..."
312s > 
312s > # - "deparse fun" --------------------------------------------------------------
312s > 
312s > # expect_identical(unitizer:::deparse_fun(quote(fun)), "fun")
312s > unitizer:::deparse_fun(quote(fun))
312s [1] "fun"
312s > # expect_identical(unitizer:::deparse_fun(quote(function(x) NULL)),
312s > #     NA_character_)
312s > unitizer:::deparse_fun(quote(function(x) NULL))
312s [1] NA
312s > # expect_identical(unitizer:::deparse_fun("hello"), character(0L))
312s > unitizer:::deparse_fun("hello")
312s character(0)
312s > 
312s > # - "deparse_prompt" -----------------------------------------------------------
312s > 
312s > suppressWarnings(glob <- unitizer:::unitizerGlobal$new())
312s > item <- unitizer:::exec(quote(if (TRUE) {
312s +     25
312s + } else {
312s +     42
312s + }), new.env(), glob)
312s > unitizer:::deparse_prompt(item)
312s [1] "> if (TRUE) {" "+     25"      "+ } else {"    "+     42"     
312s [5] "+ }"          
312s > 
312s > # - "deparse_mixed" ------------------------------------------------------------
312s > 
312s > b <- setNames(1:3, letters[1:3])
312s > x <- quote(1 + b)
312s > x[[3]] <- b
312s > # expect_equal(unitizer:::deparse_mixed(x), "quote(1 + 1:3)")
312s > unitizer:::deparse_mixed(x)
312s [1] "quote(1 + 1:3)"
312s > y <- quote(1 + 3 + b)
312s > y[[3]] <- b
312s > # expect_equal(unitizer:::deparse_mixed(y), "quote(1 + 3 + 1:3)")
312s > unitizer:::deparse_mixed(y)
312s [1] "quote(1 + 3 + 1:3)"
312s > 
312s > # - "(Un)ordered Lists" --------------------------------------------------------
312s > 
312s > vec <- c("hello htere how are you blah blah blah blah blah",
312s +     "this is helpful you know", "Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.",
312s +     letters[1:10])
312s > 
312s > # expect_equal(as.character(unitizer:::OL(vec), width = 100L),
312s > #     c(" 1. hello htere how are you blah blah blah blah blah",
312s > #         " 2. this is helpful you know", " 3. Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut ",
312s > #         "    labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco ",
312s > #         "    laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in ",
312s > #         "    voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat ",
312s > #         "    non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.",
312s > #         " 4. a", " 5. b", " 6. c", " 7. d", " 8. e", " 9. f",
312s > #         "10. g", "11. h", "12. i", "13. j"))
312s > writeLines(as.character(unitizer:::OL(vec), width = 100L))
312s  1. hello htere how are you blah blah blah blah blah
312s  2. this is helpful you know
312s  3. Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod tempor incididunt ut 
312s     labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco 
312s     laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in 
312s     voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat 
312s     non proident, sunt in culpa qui officia deserunt mollit anim id est laborum.
312s  4. a
312s  5. b
312s  6. c
312s  7. d
312s  8. e
312s  9. f
312s 10. g
312s 11. h
312s 12. i
312s 13. j
312s > 
312s > # expect_equal(as.character(unitizer:::UL(vec), width = 20L), c("- hello htere how ",
312s > #     "  are you blah blah ", "  blah blah blah", "- this is helpful ",
312s > #     "  you know", "- Lorem ipsum dolor ", "  sit amet, consec-",
312s > #     "  tetur adipisicing ", "  elit, sed do ", "  eiusmod tempor ",
312s > #     "  incididunt ut ", "  labore et dolore ", "  magna aliqua. Ut ",
312s > #     "  enim ad minim ", "  veniam, quis ", "  nostrud exer-",
312s > #     "  citation ullamco ", "  laboris nisi ut ", "  aliquip ex ea ",
312s > #     "  commodo consequat.", "  Duis aute irure ", "  dolor in reprehen-",
312s > #     "  derit in voluptate", "  velit esse cillum ", "  dolore eu fugiat ",
312s > #     "  nulla pariatur. ", "  Excepteur sint ", "  occaecat cupidatat",
312s > #     "  non proident, sunt", "  in culpa qui ", "  officia deserunt ",
312s > #     "  mollit anim id est", "  laborum.", "- a", "- b", "- c",
312s > #     "- d", "- e", "- f", "- g", "- h", "- i", "- j"))
312s > 
312s > writeLines(as.character(unitizer:::UL(vec), width = 20L))
312s - hello htere how 
312s   are you blah blah 
312s   blah blah blah
312s - this is helpful 
312s   you know
312s - Lorem ipsum dolor 
312s   sit amet, consec-
312s   tetur adipisicing 
312s   elit, sed do 
312s   eiusmod tempor 
312s   incididunt ut 
312s   labore et dolore 
312s   magna aliqua. Ut 
312s   enim ad minim 
312s   veniam, quis 
312s   nostrud exer-
312s   citation ullamco 
312s   laboris nisi ut 
312s   aliquip ex ea 
312s   commodo consequat.
312s   Duis aute irure 
312s   dolor in reprehen-
312s   derit in voluptate
312s   velit esse cillum 
312s   dolore eu fugiat 
312s   nulla pariatur. 
312s   Excepteur sint 
312s   occaecat cupidatat
312s   non proident, sunt
312s   in culpa qui 
312s   officia deserunt 
312s   mollit anim id est
312s   laborum.
312s - a
312s - b
312s - c
312s - d
312s - e
312s - f
312s - g
312s - h
312s - i
312s - j
312s > 
312s > # test_that("Messing with traceback", {
312s > #   warning("Missing traceback tests")
312s > #   # Main problem with this is that there may not be a good way to cause a trace
312s > #   # back to register while not also stopping execution of this file, so not
312s > #   # sure if this can be tested
312s > # } )
312s > 
312s > # - "Compare Conditions" -------------------------------------------------------
312s > 
312s > lst1 <- new("conditionList", .items = list(simpleWarning("warning",
312s +     quote(yo + yo)), simpleWarning("warning2", quote(yo2 + yo)),
312s +     simpleWarning("warning3", quote(yo3 + yo)), simpleError("error1",
312s +         quote(make_an_error()))))
312s > lst2 <- new("conditionList", .items = list(simpleWarning("warning",
312s +     quote(yo + yo)), simpleWarning("warning2", quote(yo2 + yo)),
312s +     simpleError("error1", quote(make_an_error()))))
312s > 
312s > all.equal(lst1, lst1)
312s [1] TRUE
312s > # expect_equal("Condition count mismatch; expected 4 (got 3)",
312s > #     all.equal(lst1, lst2))
312s > all.equal(lst1, lst2)#
312s [1] "Condition count mismatch; expected 4 (got 3)"
312s > # expect_equal("There is one condition mismatch at index [[3]]",
312s > #     all.equal(lst2, lst1[1L:3L]))
312s > all.equal(lst2, lst1[1L:3L])
312s [1] "There is one condition mismatch at index [[3]]"
312s > # expect_equal("There are 2 condition mismatches, first one at index [[1]]",
312s > #     all.equal(lst2, lst1[2L:4L]))
312s > all.equal(lst2, lst1[2L:4L])
312s [1] "There are 2 condition mismatches, first one at index [[1]]"
312s > attr(lst1[[3L]], "unitizer.printed") <- TRUE
312s > # expect_equal("There is one condition mismatch at index [[3]]",
312s > #     all.equal(lst2, lst1[1L:3L]))
312s > all.equal(lst2, lst1[1L:3L])
312s [1] "There is one condition mismatch at index [[3]]"
312s > # expect_equal(c("Condition type mismatch, `target` is 'Error', but `current` is 'Warning'",
312s > #     "Condition mismatch may involve print/show methods; carefully review conditions with `.NEW$conditions` and `.REF$conditions` as just typing `.ref` or `.new` at the prompt will invoke print/show methods, which themselves may be the cause of the mismatch"),
312s > #     all.equal(lst2[[3]], lst1[[3]]))
312s > all.equal(lst2[[3]], lst1[[3]])
312s [1] "Condition type mismatch, `target` is 'Error', but `current` is 'Warning'"                                                                                                                                                                                   
312s [2] "Condition mismatch may involve print/show methods; carefully review conditions with `.NEW$conditions` and `.REF$conditions` as just typing `.ref` or `.new` at the prompt will invoke print/show methods, which themselves may be the cause of the mismatch"
312s > 
312s > attr(lst1[[3L]], "unitizer.printed") <- NULL
312s > lst1[[2L]] <- simpleWarning("warning2", quote(yo2 + yoyo))
312s > # This used to produce "one condition mismatch at index [[2]]", but with the
312s > # relation of condition call comparison, no longer fails.  Arguably this one
312s > # should still fail as none of the parameters are named.
312s > all.equal(lst2, lst1[c(1L:2L, 4L)])
312s [1] TRUE
312s > 
312s > # single condition display with a more complex condition
312s > large.cond <- simpleWarning(paste0(collapse = "\n", c("This is a complicated warning:",
312s +     as.character(unitizer:::UL(c("one warning", "two warning",
312s +         "three warning"))))), quote(make_a_warning()))
312s > lst3 <- new("conditionList", .items = list(large.cond))
312s > show1 <- capture.output(show(lst3))
312s > all.equal(show1, rds("misc_cndlistshow1"))
312s [1] TRUE
312s > 
312s > attr(lst3[[1L]], "unitizer.printed") <- TRUE
312s > lst3[[2L]] <- simpleWarning("warning2", quote(yo2 + yoyo))
312s > lst3
312s Condition list with 2 conditions:
312s 1. [print] Warning in make_a_warning() : This is a complicated warning:
312s    - one warning
312s    - two warning
312s    - three warning
312s 2. Warning in yo2 + yoyo : warning2
312s 
312s [print] means condition was issued by a print or show method for an auto-printed
312s result.
312s > 
312s > # empty condition
312s > lst3[0]
312s Empty condition list
312s > 
312s > # Conditions with mismatched calls (due to instability in call generation for C
312s > # errors issue285)
312s > lst4a <- new("conditionList", 
312s +   .items = list(
312s +     simpleWarning("A", quote(fun(a=b, c=d))),
312s +     simpleWarning("B", quote(fun(a=b, c=d))),
312s +     simpleWarning("C", quote(fun(a=b, c=d))),
312s +     simpleWarning("D", quote(fun(a, c=d))),
312s +     simpleWarning("E", quote(fun())),
312s +     simpleWarning("F"),
312s +     simpleWarning("G", quote(fun(a=b, c=d))),
312s +     simpleWarning("H", quote(fun(a=b, c=d))),
312s +     simpleWarning("I", quote(foo(a=b, c=d)))
312s + ))
312s > lst4b <- new("conditionList", 
312s +   .items = list(
312s +     simpleWarning("A", quote(fun(a=b, c=d))),
312s +     simpleWarning("B", quote(fun(a=B, c=d))),
312s +     simpleWarning("C", quote(fun(b, c=d))),
312s +     simpleWarning("D", quote(fun(a=b, c=d))),
312s +     simpleWarning("E", quote(fun(a=b, c=d))),
312s +     simpleWarning("F", quote(fun(a=b, c=d))),
312s +     simpleWarning("G"),
312s +     simpleWarning("H", quote(fun())),
312s +     simpleWarning("I", quote(bar(a=b, c=d)))
312s + ))
312s > all.equal(lst4a, lst4b)
312s [1] "There are 2 condition mismatches, first one at index [[2]]"
312s > all.equal(lst4a[c(2, 9)], lst4b[c(2, 9)])
312s [1] "There are 2 condition mismatches, first one at index [[1]]"
312s > 
312s > # - "Compare Functions With Traces" --------------------------------------------
312s > 
312s > fun.a <- base::library
312s > identical(fun.a, base::library)
312s [1] TRUE
312s > trace(library, where = .BaseNamespaceEnv)
312s Tracing function "library" in package "namespace:base"
312s [1] "library"
312s > identical(fun.a, base::library)  # FALSE
312s [1] FALSE
312s > unitizer:::identical_fun(fun.a, base::library)
312s [1] TRUE
312s > unitizer:::identical_fun(base::library, fun.a)  # FALSE
312s [1] FALSE
312s > untrace(library, where = .BaseNamespaceEnv)
312s Untracing function "library" in package "namespace:base"
312s > # expect_error(unitizer:::identical_fun(1, base::library))
312s > try(unitizer:::identical_fun(1, base::library))
312s Error in unitizer:::identical_fun(1, base::library) : 
312s   Arguments `x` and `y` must both be functions.
312s > # expect_error(unitizer:::identical_fun(base::library, 1))
312s > try(unitizer:::identical_fun(base::library, 1))
312s Error in unitizer:::identical_fun(base::library, 1) : 
312s   Arguments `x` and `y` must both be functions.
312s > unitizer:::identical_fun(base::print, base::print)
312s [1] TRUE
312s > # make sure all.equal dispatches properly out of namespace
312s > 
312s > # expect_equal(evalq(all.equal(new("conditionList", .items = list(simpleWarning("warning",
312s > #     quote(yo + yo)), simpleWarning("warning2", quote(yo2 + yo)),
312s > #     simpleWarning("warning3", quote(yo3 + yo)), simpleError("error1",
312s > #         quote(make_an_error())))), new("conditionList", .items = list(simpleWarning("warning",
312s > #     quote(yo + yo)), simpleWarning("warning2", quote(yo2 + yo)),
312s > #     simpleError("error1", quote(make_an_error()))))), envir = getNamespace("stats")),
312s > #     "Condition count mismatch; expected 4 (got 3)")
312s > evalq(all.equal(new("conditionList", .items = list(simpleWarning("warning",
312s +     quote(yo + yo)), simpleWarning("warning2", quote(yo2 + yo)),
312s +     simpleWarning("warning3", quote(yo3 + yo)), simpleError("error1",
312s +         quote(make_an_error())))), new("conditionList", .items = list(simpleWarning("warning",
312s +     quote(yo + yo)), simpleWarning("warning2", quote(yo2 + yo)),
312s +     simpleError("error1", quote(make_an_error()))))), envir = getNamespace("stats"))
312s [1] "Condition count mismatch; expected 4 (got 3)"
312s > 
312s > # - "word_cat" -----------------------------------------------------------------
312s > 
312s > str <- "Humpty dumpty sat on a wall and took a big fall.  All the kings horses and men couldn't put humpty dumpty together again"
312s > # expect_equal(capture.output(unitizer:::word_cat(str, width = 20L)),
312s > #     c("Humpty dumpty sat on", "a wall and took a ", "big fall.  All the ",
312s > #         "kings horses and men", "couldn't put humpty ", "dumpty together ",
312s > #         "again"))
312s > unitizer:::word_cat(str, width = 20L)
312s Humpty dumpty sat on
312s a wall and took a 
312s big fall.  All the 
312s kings horses and men
312s couldn't put humpty 
312s dumpty together 
312s again
312s > # expect_error(unitizer:::word_cat(stop("boom"), width = 20L, sep = " "),
312s > #     "boom")
312s > try(unitizer:::word_cat(stop("boom"), width = 20L, sep = " "))
312s Error in word_wrap_split(..., width = width, tolerance = tolerance, sep = sep) : 
312s   boom
312s > str2 <- rep("goodbye goodbye")
312s > str1 <- rep("hello hello hello", 2)
312s > # expect_equal(c("hello hello ", "hello hello ", "hello hello ",
312s > #     "goodbye ", "goodbye"), capture.output())
312s > unitizer:::word_cat(str1, str2, width = 14L)
312s hello hello 
312s hello hello 
312s hello hello 
312s goodbye 
312s goodbye
312s > 
312s > # Make sure default works
312s > old.width <- options(width = 20L)
312s > # expect_equal(capture.output(unitizer:::word_cat(str)), c("Humpty dumpty sat on",
312s > #     "a wall and took a ", "big fall.  All the ", "kings horses and men",
312s > #     "couldn't put humpty ", "dumpty together ", "again"))
312s > unitizer:::word_cat(str)
312s Humpty dumpty sat on
312s a wall and took a 
312s big fall.  All the 
312s kings horses and men
312s couldn't put humpty 
312s dumpty together 
312s again
312s > options(old.width)
312s > 
312s > # - "relativize_path" ----------------------------------------------------------
312s > 
312s > base <- file.path(system.file(package = "unitizer"), "expkg")
312s > wd <- file.path(base, "infer")
312s > p1 <- file.path(wd, "R")
312s > p2 <- file.path(base, "unitizerdummypkg1")
312s > # expect_equal(unitizer:::relativize_path(p1, wd), "R")
312s > unitizer:::relativize_path(p1, wd)
312s [1] "R"
312s > # expect_equal(unitizer:::relativize_path(p2, wd), "../unitizerdummypkg1")
312s > unitizer:::relativize_path(p2, wd)
312s [1] "../unitizerdummypkg1"
312s > # expect_equal(unitizer:::relativize_path(c(p1, p2), wd), c("R",
312s > #     "../unitizerdummypkg1"))
312s > unitizer:::relativize_path(c(p1, p2), wd)
312s [1] "R"                    "../unitizerdummypkg1"
312s > # expect_equal(unitizer:::relativize_path(c(p1, p2), wd), c("R",
312s > #     "../unitizerdummypkg1"))
312s > unitizer:::relativize_path(c(p1, p2), wd)
312s [1] "R"                    "../unitizerdummypkg1"
312s > # expect_equal(unitizer:::relativize_path(c(p1, p2, file.path("notarealpath",
312s > #     "foo")), wd), c("R", "../unitizerdummypkg1", file.path("notarealpath",
312s > #     "foo")))
312s > unitizer:::relativize_path(
312s +   c(p1, p2, file.path("notarealpath", "foo")), wd
312s + )
312s [1] "R"                    "../unitizerdummypkg1" "notarealpath/foo"    
312s > # expect_equal(unitizer:::relativize_path("/a/b/c/d/e/x.txt"),
312s > #     "/a/b/c/d/e/x.txt")
312s > unitizer:::relativize_path("/a/b/c/d/e/x.txt", exists = TRUE)
312s [1] "/a/b/c/d/e/x.txt"
312s > # ## This was too difficult to get to behave consistently across windows and
312s > # ## other platforms (see docs)
312s > # wd <- sub("^[a-zA-Z]:", "", getwd())
312s > # all.equal(
312s > #   unitizer:::relativize_path(
312s > #     "/a/b/c/d/e/x.txt", only.if.shorter = FALSE, exists = TRUE
312s > #   ),
312s > #   do.call(
312s > #     file.path,
312s > #     c(
312s > #       as.list(
312s > #         rep(
312s > #           "..",
312s > #           length(unlist(strsplit(wd, .Platform$file.sep, fixed = TRUE))) -
312s > #           1L
312s > #       ) ),
312s > #       list("a/b/c/d/e/x.txt")
312s > # ) ) )
312s > 
312s > # - "path_clean" ---------------------------------------------------------------
312s > 
312s > try(unitizer:::path_clean(list()))
312s Error in unitizer:::path_clean(list()) : 
312s   Argument `path` must be character
312s > unitizer:::path_clean(file.path("a", "", "b", "c"))
312s [1] "a/b/c"
312s > 
312s > # - "unitizer:::merge_lists" ---------------------------------------------------
312s > 
312s > unitizer:::merge_lists(list(a = 1, b = 2), list(c = 3))
312s $a
312s [1] 1
312s 
312s $b
312s [1] 2
312s 
312s $c
312s [1] 3
312s 
312s > unitizer:::merge_lists(list(a = 1, b = 2, c = 3), list(d = 5, c = 5))
312s $a
312s [1] 1
312s 
312s $b
312s [1] 2
312s 
312s $c
312s [1] 5
312s 
312s $d
312s [1] 5
312s 
312s > unitizer:::merge_lists(list(a = 1, b = 2, c = 3), list(a = NULL, d = 5, c = 5))
312s $a
312s NULL
312s 
312s $b
312s [1] 2
312s 
312s $c
312s [1] 5
312s 
312s $d
312s [1] 5
312s 
312s > 
312s > # - "filename to storeid" ------------------------------------------------------
312s > 
312s > filename_to_storeid("tests.R")
312s [1] "tests.unitizer"
312s > filename_to_storeid("tests.rock")
312s Warning in filename_to_storeid("tests.rock") :
312s   Unable to translate file name 'tests.rock' to `store.id` because it does not match regex '\.[rR]$', please provide explicit `store.id` or rename to end in '.R'.  Returning in NULL for `store.id`.
312s NULL
312s > 
312s > # - "pretty_path" --------------------------------------------------------------
312s > # not supposed to exist
312s > res <- unitizer:::pretty_path("xadfasdfxcfasdfasd")  # warn
312s > 
312s > if(FALSE) {
312s +   # "fails CRAN"
312s +   # expect_identical(res, "xadfasdfxcfasdfasd")
312s +   res
312s +   unitizer:::pretty_path(normalizePath("."))
312s +   unitizer:::pretty_path(file.path(system.file(package = "stats"),
312s +     "DESCRIPTION"))
312s + }
312s > # - "quit" ---------------------------------------------------------------------
312s > 
312s > # for some reason cover tests run via travis can't handle the with_mock,
312s > # so we just use truly-quit=FALSE; UPDATE (mabye du to compiler?)
312s > # with_mock(
312s > #   quit=function(...) stop("quit!\n"), {
312s > #     unitizer:::read_line_set_vals("y")
312s > #     expect_error(capture.output(unitizer:::unitizer_quit()), "quit!")
312s > #     unitizer:::read_line_set_vals("n")
312s > #     capture.output(uq2 <- unitizer:::unitizer_quit())
312s > #     expect_equal(uq2, NULL)
312s > #     unitizer:::read_line_set_vals(c("q", "q", "q", "q", "q", "q"))
312s > #     expect_error(capture.output(unitizer:::unitizer_quit()), "quit!")
312s > #   }
312s > # )
312s > unitizer:::read_line_set_vals("y")
312s > capture.output(q.res.1 <- unitizer:::unitizer_quit(truly.quit = FALSE))
312s | You are attempting to quit R from within `unitizer`.  If you do so 
312s | you will lose any unsaved `unitizers`.  Use `Q` to quit `unitizer` 
312s | gracefully.  Are you sure you want to exit R?
312s 
312s [1] "Quit R? [y/n]: y"
312s > q.res.1
312s [1] TRUE
312s > unitizer:::read_line_set_vals("n")
312s > capture.output(q.res.2 <- unitizer:::unitizer_quit(truly.quit = FALSE))
312s | You are attempting to quit R from within `unitizer`.  If you do so 
312s | you will lose any unsaved `unitizers`.  Use `Q` to quit `unitizer` 
312s | gracefully.  Are you sure you want to exit R?
312s 
312s [1] "Quit R? [y/n]: n"
312s > q.res.2  # FALSE
312s [1] FALSE
312s > unitizer:::read_line_set_vals(c("q", "q", "q", "q", "q", "q"))
312s > capture.output(q.res.3 <- unitizer:::unitizer_quit(truly.quit = FALSE))
312s | You are attempting to quit R from within `unitizer`.  If you do so 
312s | you will lose any unsaved `unitizers`.  Use `Q` to quit `unitizer` 
312s | gracefully.  Are you sure you want to exit R?
312s 
312s | Sorry, could not understand you, quitting then.
312s 
312s [1] "Quit R? [y/n]: q" "Quit R? [y/n]: q" "Quit R? [y/n]: q" "Quit R? [y/n]: q"
312s [5] "Quit R? [y/n]: q" "Quit R? [y/n]: q"
312s > q.res.3
312s [1] TRUE
312s > unitizer:::read_line_set_vals(NULL)
312s > 
312s > # - "mock_item" ----------------------------------------------------------------
312s > 
312s > is(mock_item(), "unitizerItem")
312s [1] TRUE
312s > 
312s > # - "diff conditionList" -------------------------------------------------------
312s > 
312s > cond1 <- new("conditionList", .items = list(simpleWarning("hello",
312s +     call = quote(fun())), simpleWarning("goodbye", call = quote(fun()))))
312s > is(diffobj::diffObj(cond1, cond1), "Diff")
312s [1] TRUE
312s > 
312s > # - "Condition object structure" -----------------------------------------------
312s > 
312s > # We're assuming a particular structure for the condition object in
312s > # `faux_prompt` and `unitizer_prompt` so we put in a test here to make sure it
312s > # doesn't change
312s > cond <- simpleError("hello")
312s > is.list(cond)
312s [1] TRUE
312s > identical(names(cond), c("message", "call"))
312s [1] TRUE
312s > identical(class(cond), c("simpleError", "error", "condition"))
312s [1] TRUE
312s > 
312s > # - "options" ------------------------------------------------------------------
312s > 
312s > # not great tests...
312s > 
312s > old.opts <- options()
312s > new.opts <- unitizer:::options_zero()
312s > 
312s > all(names(new.opts) %in% names(old.opts))
312s [1] TRUE
312s > length(new.opts) <= length(old.opts)
312s [1] TRUE
312s > options(old.opts)
312s > 
312s > 
312s PASS
312s Begin testing t-nav.R
312s 
312s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
312s Copyright (C) 2024 The R Foundation for Statistical Computing
312s Platform: arm-unknown-linux-gnueabihf (32-bit)
312s 
312s R is free software and comes with ABSOLUTELY NO WARRANTY.
312s You are welcome to redistribute it under certain conditions.
312s Type 'license()' or 'licence()' for distribution details.
312s 
312s R is a collaborative project with many contributors.
312s Type 'contributors()' for more information and
312s 'citation()' on how to cite R or R packages in publications.
312s 
312s Type 'demo()' for some demos, 'help()' for on-line help, or
312s 'help.start()' for an HTML browser interface to help.
312s Type 'q()' to quit R.
312s 
313s > source(file.path("_helper", "init.R"))
313s > nav <- file.path("_helper", "unitizers", "nav.R")
313s > 
313s > # Simple navigation tests that don't require complex unitizers
313s > 
313s > # - "Re-run bookmark" -----=----------------------------------------------------
313s > 
313s > # Relates to #278.  Tests both Review and Browse
313s > 
313s > unitizer:::read_line_set_vals(
313s +   c("R", "Y", "B", "7", "R", "Y", "B", "9", "R", "Y", "Q")
313s + )
313s > unitize(nav, interactive.mode=TRUE)
313s 
314s +------------------------------------------------------------------------------+
314s | unitizer for: nav.R                                                          |
314s +------------------------------------------------------------------------------+
314s 
314s     Pass Fail  New
314s  A     -    -    2
314s  B     -    -    2
314s ..................
314s        -    -    4
314s 
314s = A ============================================================================
314s 
314s - New --------------------------------------------------------------------------
314s 
314s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
314s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
314s 
314s > a <- 42
314s > a + 1
314s [1] 43
314s 
314s unitizer> R
314s 
314s | Toggling re-run mode ON for this unitizer
314s 
314s = Finalize Unitizer ============================================================
314s 
314s | You have 4 unreviewed tests; press `B` to browse tests, `U` to go to first 
314s | unreviewed test.
314s 
314s | You made no changes to the unitizer so there is no need to update it.  While 
314s | unnecessary, you can force an update by typing O at the prompt.
314s 
314s | Re-run unitizer ([Y]es, [P]rev, [B]rowse, [U]nreviewed, [R]erun, f[O]rce)?
314s 
314s unitizer> Y
314s 
314s | unitizer unchanged.
314s 
314s +------------------------------------------------------------------------------+
314s | unitizer for: nav.R                                                          |
314s +------------------------------------------------------------------------------+
314s 
314s     Pass Fail  New
314s  A     -    -    2
314s  B     -    -    2
314s ..................
314s        -    -    4
314s 
315s = A ============================================================================
315s 
315s - New --------------------------------------------------------------------------
315s 
315s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
315s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
315s 
315s | Jumping to test #3 because that was the test under review when test re-run was
315s | requested.
315s 
315s > a <- 42
315s > a + 1
315s [1] 43
315s 
315s unitizer> B
315s 
315s = <untitled> ==============
315s   *1. z <- 24   .  .    -:-
315s = A =======================
315s   *2. a <- 42   .  .    -:-
315s    3. a + 1  .  .  .  New:-
315s    4. a + 2  .  .  .  New:-
315s = B =======================
315s   *5. b <- 25   .  .    -:-
315s   *6. bb <- 26  .  .    -:-
315s    7. b + 1  .  .  .  New:-
315s   *8. bbb <- 27 .  .    -:-
315s    9. b + 2  .  .  .  New:-
315s 
315s | What test do you wish to review (input a test number, [U]nreviewed)?
315s 
315s unitizer> 7
315s = B ============================================================================
315s 
315s - New --------------------------------------------------------------------------
315s 
315s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
315s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
315s 
315s > b <- 25
315s > bb <- 26
315s > b + 1
315s [1] 26
315s 
315s unitizer> R
315s 
315s | Toggling re-run mode ON for this unitizer
315s 
315s = Finalize Unitizer ============================================================
315s 
315s | You have 4 unreviewed tests; press `B` to browse tests, `U` to go to first 
315s | unreviewed test.
315s 
315s | You made no changes to the unitizer so there is no need to update it.  While 
315s | unnecessary, you can force an update by typing O at the prompt.
315s 
315s | Re-run unitizer ([Y]es, [P]rev, [B]rowse, [U]nreviewed, [R]erun, f[O]rce)?
315s 
315s unitizer> Y
315s 
315s | unitizer unchanged.
315s 
315s +------------------------------------------------------------------------------+
315s | unitizer for: nav.R                                                          |
315s +------------------------------------------------------------------------------+
315s 
315s     Pass Fail  New
315s  A     -    -    2
315s  B     -    -    2
315s ..................
315s        -    -    4
315s 
315s = B ============================================================================
315s 
315s - New --------------------------------------------------------------------------
315s 
315s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
315s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
315s 
315s | Jumping to test #7 because that was the test under review when test re-run was
315s | requested.
315s 
315s > b <- 25
315s > bb <- 26
315s > b + 1
315s [1] 26
315s 
315s unitizer> B
315s 
315s = <untitled> ==============
315s   *1. z <- 24   .  .    -:-
315s = A =======================
315s   *2. a <- 42   .  .    -:-
315s    3. a + 1  .  .  .  New:-
315s    4. a + 2  .  .  .  New:-
315s = B =======================
315s   *5. b <- 25   .  .    -:-
315s   *6. bb <- 26  .  .    -:-
315s    7. b + 1  .  .  .  New:-
315s   *8. bbb <- 27 .  .    -:-
315s    9. b + 2  .  .  .  New:-
315s 
315s | What test do you wish to review (input a test number, [U]nreviewed)?
315s 
315s unitizer> 9
315s = B ============================================================================
315s 
315s - New --------------------------------------------------------------------------
315s 
315s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
315s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
315s 
315s > bbb <- 27
315s > b + 2
315s [1] 27
315s 
315s unitizer> R
315s 
315s | Toggling re-run mode ON for this unitizer
315s 
315s = Finalize Unitizer ============================================================
315s 
315s | You have 4 unreviewed tests; press `B` to browse tests, `U` to go to first 
315s | unreviewed test.
315s 
315s | You made no changes to the unitizer so there is no need to update it.  While 
315s | unnecessary, you can force an update by typing O at the prompt.
315s 
315s | Re-run unitizer ([Y]es, [P]rev, [B]rowse, [U]nreviewed, [R]erun, f[O]rce)?
315s 
315s unitizer> Y
315s 
315s | unitizer unchanged.
315s 
315s +------------------------------------------------------------------------------+
315s | unitizer for: nav.R                                                          |
315s +------------------------------------------------------------------------------+
315s 
315s     Pass Fail  New
315s  A     -    -    2
315s  B     -    -    2
315s ..................
315s        -    -    4
315s 
315s = B ============================================================================
315s 
315s - New --------------------------------------------------------------------------
315s 
315s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
315s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
315s 
315s | Jumping to test #9 because that was the test under review when test re-run was
315s | requested.
315s 
315s > bbb <- 27
315s > b + 2
315s [1] 27
315s 
315s unitizer> Q
315s 
315s | No changes recorded.
315s | unitizer unchanged.
315s 
316s > 
316s > 
316s PASS
316s Begin testing t-parse.R
316s 
316s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
316s Copyright (C) 2024 The R Foundation for Statistical Computing
316s Platform: arm-unknown-linux-gnueabihf (32-bit)
316s 
316s R is free software and comes with ABSOLUTELY NO WARRANTY.
316s You are welcome to redistribute it under certain conditions.
316s Type 'license()' or 'licence()' for distribution details.
316s 
316s R is a collaborative project with many contributors.
316s Type 'contributors()' for more information and
316s 'citation()' on how to cite R or R packages in publications.
316s 
316s Type 'demo()' for some demos, 'help()' for on-line help, or
316s 'help.start()' for an HTML browser interface to help.
316s Type 'q()' to quit R.
316s 
316s > source(file.path("_helper", "init.R"))
316s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("refobjs")
316s > 
316s > txt <- "# This is an early comment\n\n  hello <- 25\n\n  # multi\n  # line\n  # comment\n\n  matrix(1:9, 3)  # and another!\n\n  unitizer_sect(\"here is a section\", {\n    # test that were not crazy\n\n    1 + 1 == 2   # TRUE hopefully\n\n    # Still not crazy\n\n    2 * 2 == 2 ^ 2\n    # Tada\n  } )\n  sample(1:10)\n\n  # and this comment belongs to whom?\n\n  runif(20)\n  print(\"woo\")  # and I?\n  "
316s > all <- unitizer:::parse_dat_get(text = txt)
316s > prs <- all$expr
316s > dat <- all$dat
316s > dat$parent <- pmax(0L, dat$parent)
316s > # With R4.0 some of the ids started changing
316s > normalize_id <- function(dat) {
316s +     idu <- sort(unique(dat[["id"]]))
316s +     id <- with(dat, match(id, idu))
316s +     parent <- with(dat, ifelse(parent == 0L, 0L, match(parent, 
316s +         idu)))
316s +     dat[["id"]] <- id
316s +     dat[["parent"]] <- parent
316s +     dat
316s + }
316s > dat <- normalize_id(dat)
316s > dat.split <- dat.split.2 <- par.ids.3 <- NULL
316s > if.text <- "if # IFFY\n(x > 3 # ifcond\n){ hello\n #whome to attach?\n} else #final\ngoodbye"
316s > 
316s > # - "Top Level Parents Identified Correctly" -----------------------------------
316s > 
316s > # "Identified top level parents?"
316s > par.ids <- with(dat, unitizer:::top_level_parse_parents(id, parent))
316s > par.ids
316s  [1]  0  0  7  7  7  7  7  0  0  0  0 24 24 24 24 24 24 24 24 24 24 24 24 24  0
316s [26]  0 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64
316s [51] 64 64 64 64 64 64 64 64 64 64 64 64 64 64  0 75 75 75 75 75 75 75 75 75 75
316s [76]  0  0 83 83 83 83 83 83  0 90 90 90 90 90 90  0
316s > dat.split <- split(dat, par.ids)
316s > 
316s > # "Identified sub-level top level parents correctly"
316s > par.ids.2 <- with(dat.split$`64`, unitizer:::top_level_parse_parents(id, 
316s +     parent, 64L))
316s > par.ids.2
316s  [1] 28 64 64 31 64 64 64 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62
316s [26] 62 62 62 62 62 62 62 62 62 62 62 62 64
316s > dat.split.2 <- split(dat.split$`64`, par.ids.2)
316s > 
316s > # "Parent relationships in `unitizer_sect` piece."
316s > 
316s > par.ids.3 <- with(dat.split.2$`62`, unitizer:::top_level_parse_parents(id, 
316s +     parent, 62L))
316s > par.ids.3
316s  [1] 62 62 62 44 44 44 44 44 44 44 44 44 62 62 62 59 59 59 59 59 59 59 59 59 59
316s [26] 59 59 59 62 62
316s > 
316s > # - "Comments Are Assigned" ----------------------------------------------------
316s > 
316s > # "Did we assign comments correctly to topmost level?"
316s > lapply(unitizer:::comments_assign(prs, dat.split$`0`), attr, "comment")
316s [[1]]
316s [1] "# This is an early comment"
316s 
316s [[2]]
316s [1] "# multi"        "# line"         "# comment"      "# and another!"
316s 
316s [[3]]
316s NULL
316s 
316s [[4]]
316s NULL
316s 
316s [[5]]
316s [1] "# and this comment belongs to whom?"
316s 
316s [[6]]
316s [1] "# and I?"
316s 
316s > 
316s > # "No comments here so no changes should occur"
316s > all.equal(unitizer:::comments_assign(prs[[3]], dat.split.2$`64`), prs[[3]])
316s [1] TRUE
316s > 
316s > # "Comments in `unitizer_sect` body assigned correctly"
316s > lapply(unitizer:::comments_assign(prs[[3]][[3]], split(dat.split.2$`62`, 
316s +     par.ids.3)$`62`), attr, "comment")
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [1] "# test that were not crazy" "# TRUE hopefully"          
316s 
316s [[3]]
316s [1] "# Still not crazy"
316s 
316s > 
316s > # - "Ancestry Descend" ---------------------------------------------------------
316s > 
316s > x <- unitizer:::parse_dat_get(text = "1 + 1; fun(x, fun(y + z))")$dat
316s > x <- normalize_id(x)
316s > 
316s > unitizer:::ancestry_descend(x$id, x$parent, 0)
316s       children level
316s  [1,]        7     0
316s  [2,]        6     0
316s  [3,]       26     0
316s  [4,]        2     1
316s  [5,]        3     1
316s  [6,]        5     1
316s  [7,]       10     1
316s  [8,]        9     1
316s  [9,]       13     1
316s [10,]       12     1
316s [11,]       24     1
316s [12,]       25     1
316s [13,]        1     2
316s [14,]        4     2
316s [15,]        8     2
316s [16,]       11     2
316s [17,]       16     2
316s [18,]       15     2
316s [19,]       23     2
316s [20,]       21     2
316s [21,]       14     3
316s [22,]       19     3
316s [23,]       18     3
316s [24,]       22     3
316s [25,]       17     4
316s [26,]       20     4
316s > 
316s > # - "Clean up Parse Data" ------------------------------------------------------
316s > 
316s > dat <- unitizer:::parse_dat_get(text = "{function(x) NULL;; #comment\n}")$dat
316s > # set negative ids to be top level parents
316s > dat <- transform(dat, parent = ifelse(parent < 0, 0L, parent))
316s > dat <- normalize_id(dat)
316s > 
316s > # "Ancestry Descend"
316s > dat.anc <- unitizer:::ancestry_descend(dat$id, dat$parent, 0L)
316s > dat.anc
316s       children level
316s  [1,]       15     0
316s  [2,]        1     1
316s  [3,]       13     1
316s  [4,]       12     1
316s  [5,]       14     1
316s  [6,]       11     2
316s  [7,]       10     2
316s  [8,]        9     3
316s  [9,]        8     3
316s [10,]        2     4
316s [11,]        3     4
316s [12,]        4     4
316s [13,]        5     4
316s [14,]        7     4
316s [15,]        6     5
316s > 
316s > # "Excise `exprlist`"
316s > unitizer:::prsdat_fix_exprlist(dat, dat.anc)$token
316s  [1] "expr"           "'{'"            "expr"           "FUNCTION"      
316s  [5] "'('"            "SYMBOL_FORMALS" "')'"            "NULL_CONST"    
316s  [9] "expr"           "COMMENT"        "'}'"           
316s > 
316s > dat.1 <- unitizer:::parse_dat_get(text = "{1 ; ; ;2;}")$dat
316s > # set negative ids to be top level parents
316s > dat.1 <- transform(dat.1, parent = ifelse(parent < 0, 0L, parent))
316s > dat.1 <- normalize_id(dat.1)
316s > 
316s > # "Another `exprlist` test"
316s > unname(
316s +   as.list(
316s +     unitizer:::prsdat_fix_exprlist(
316s +       dat.1, 
316s +       unitizer:::ancestry_descend(dat.1$id, dat.1$parent, 0L)
316s +     )[c("parent", "token")]
316s + ) )
316s [[1]]
316s [1]  0 14  3 14 10 14 14
316s 
316s [[2]]
316s [1] "expr"      "'{'"       "NUM_CONST" "expr"      "NUM_CONST" "expr"     
316s [7] "'}'"      
316s 
316s > dat.2 <- unitizer:::parse_dat_get(text = "{NULL; yowza; #comment\nhello\n}")$dat
316s > # set negative ids to be top level parents
316s > dat.2 <- transform(dat.2, parent = ifelse(parent < 0, 0L, parent))
316s > dat.2 <- normalize_id(dat.2)
316s > 
316s > # "Yet another `exprlist`"
316s > unname(
316s +   as.list(
316s +     unitizer:::prsdat_fix_exprlist(
316s +       dat.2, unitizer:::ancestry_descend(dat.2$id, dat.2$parent, 0L)
316s +     )[c("parent", "token")]
316s + ) )
316s [[1]]
316s  [1]  0 13  3 13  7 13 13 11 13 13
316s 
316s [[2]]
316s  [1] "expr"       "'{'"        "NULL_CONST" "expr"       "SYMBOL"    
316s  [6] "expr"       "COMMENT"    "SYMBOL"     "expr"       "'}'"       
316s 
316s > 
316s > dat.2a <- normalize_id(
316s +   unitizer:::parse_dat_get(text = "for(i in x) {if(x) break else next}")$dat
316s + )
316s > # "`for` cleanup"
316s > 
316s > as.list(unitizer:::prsdat_fix_for(dat.2a[-1L, ]))
316s $line1
316s  [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
316s 
316s $col1
316s  [1]  1  5 10 10 13 13 14 14 16 17 17 18 20 20 26 31 31 35
316s 
316s $line2
316s  [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
316s 
316s $col2
316s  [1]  3  5 10 10 35 13 34 15 16 17 17 18 24 24 29 34 34 35
316s 
316s $id
316s  [1]  1  3  5  7 22  9 21 10 11 12 14 13 15 16 17 18 19 20
316s 
316s $parent
316s  [1] 23 23  7 23 23 22 22 21 21 14 21 21 16 21 21 19 21 22
316s 
316s $token
316s  [1] "FOR"    "SYMBOL" "SYMBOL" "expr"   "expr"   "'{'"    "expr"   "IF"    
316s  [9] "'('"    "SYMBOL" "expr"   "')'"    "BREAK"  "expr"   "ELSE"   "NEXT"  
316s [17] "expr"   "'}'"   
316s 
316s $terminal
316s  [1]  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE  TRUE  TRUE  TRUE FALSE  TRUE
316s [13]  TRUE FALSE  TRUE  TRUE FALSE  TRUE
316s 
316s $text
316s  [1] "for"   "i"     "x"     ""      ""      "{"     ""      "if"    "("    
316s [10] "x"     ""      ")"     "break" ""      "else"  "next"  ""      "}"    
316s 
316s > 
316s > dat.3 <- normalize_id(unitizer:::parse_dat_get(text = if.text)$dat)
316s > 
316s > # "`if` cleanup"
316s > 
316s > unname(as.list(unitizer:::prsdat_fix_if(dat.3[-1, ])[c("id", "token")]))
316s [[1]]
316s  [1]  1  2 11  4  6  5  7  8  9 17 12 13 14 15 16 19 20 21
316s 
316s [[2]]
316s  [1] "IF"        "COMMENT"   "expr"      "SYMBOL"    "expr"      "GT"       
316s  [7] "NUM_CONST" "expr"      "COMMENT"   "expr"      "'{'"       "SYMBOL"   
316s [13] "expr"      "COMMENT"   "'}'"       "COMMENT"   "SYMBOL"    "expr"     
316s 
316s > 
316s > # - "Full Parse Works Properly" ------------------------------------------------
316s > 
316s > # "Full Comment Parse"
316s > unitizer:::comm_extract(unitizer:::parse_with_comments(text = txt))
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s [1] "# This is an early comment"
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[3]]
316s [[3]][[1]]
316s [1] "# multi"        "# line"         "# comment"      "# and another!"
316s 
316s [[3]][[2]]
316s [[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[3]][[3]]
316s [[3]][[3]][[1]]
316s NULL
316s 
316s [[3]][[3]][[2]]
316s [[3]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[3]][[3]][[3]]
316s [[3]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[3]][[3]][[4]]
316s [[3]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[3]][[4]]
316s [[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[4]]
316s [[4]][[1]]
316s NULL
316s 
316s [[4]][[2]]
316s [[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[3]]
316s [[4]][[3]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]]
316s [[4]][[4]][[1]]
316s NULL
316s 
316s [[4]][[4]][[2]]
316s [[4]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[3]]
316s [[4]][[4]][[3]][[1]]
316s [1] "# test that were not crazy" "# TRUE hopefully"          
316s 
316s [[4]][[4]][[3]][[2]]
316s [[4]][[4]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[3]][[3]]
316s [[4]][[4]][[3]][[3]][[1]]
316s NULL
316s 
316s [[4]][[4]][[3]][[3]][[2]]
316s [[4]][[4]][[3]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[3]][[3]][[3]]
316s [[4]][[4]][[3]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[3]][[3]][[4]]
316s [[4]][[4]][[3]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[4]][[4]][[3]][[4]]
316s [[4]][[4]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[4]][[4]][[4]]
316s [[4]][[4]][[4]][[1]]
316s [1] "# Still not crazy"
316s 
316s [[4]][[4]][[4]][[2]]
316s [[4]][[4]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[4]][[3]]
316s [[4]][[4]][[4]][[3]][[1]]
316s NULL
316s 
316s [[4]][[4]][[4]][[3]][[2]]
316s [[4]][[4]][[4]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[4]][[3]][[3]]
316s [[4]][[4]][[4]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[4]][[3]][[4]]
316s [[4]][[4]][[4]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[4]][[4]][[4]][[4]]
316s [[4]][[4]][[4]][[4]][[1]]
316s NULL
316s 
316s [[4]][[4]][[4]][[4]][[2]]
316s [[4]][[4]][[4]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[4]][[4]][[3]]
316s [[4]][[4]][[4]][[4]][[3]][[1]]
316s NULL
316s 
316s 
316s [[4]][[4]][[4]][[4]][[4]]
316s [[4]][[4]][[4]][[4]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s 
316s 
316s 
316s [[5]]
316s [[5]][[1]]
316s NULL
316s 
316s [[5]][[2]]
316s [[5]][[2]][[1]]
316s NULL
316s 
316s 
316s [[5]][[3]]
316s [[5]][[3]][[1]]
316s NULL
316s 
316s [[5]][[3]][[2]]
316s [[5]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[5]][[3]][[3]]
316s [[5]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[5]][[3]][[4]]
316s [[5]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s 
316s [[6]]
316s [[6]][[1]]
316s [1] "# and this comment belongs to whom?"
316s 
316s [[6]][[2]]
316s [[6]][[2]][[1]]
316s NULL
316s 
316s 
316s [[6]][[3]]
316s [[6]][[3]][[1]]
316s NULL
316s 
316s 
316s 
316s [[7]]
316s [[7]][[1]]
316s [1] "# and I?"
316s 
316s [[7]][[2]]
316s [[7]][[2]][[1]]
316s NULL
316s 
316s 
316s [[7]][[3]]
316s [[7]][[3]][[1]]
316s NULL
316s 
316s 
316s 
316s > 
316s > # "EQ_SUB and SYMBOL_SUB test"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "structure(1:3, # the data\nclass # the label\n=#the equal sign\n'hello' # the class\n)"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s [1] "# the data"
316s 
316s [[2]][[3]][[2]]
316s [[2]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[3]]
316s [[2]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[4]]
316s [[2]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]]$class
316s [[2]]$class[[1]]
316s [1] "# the label"     "#the equal sign" "# the class"    
316s 
316s 
316s 
316s > 
316s > # "Function with `exprlist`"
316s > 
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "function(x #first arg\n, y=25 #second arg with default\n) {x + y; # first comment\n; yo #second comment\n x / y; #lastcomment \n;}"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s [1] "#first arg"
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s NULL
316s 
316s [[2]][[3]]$x
316s [[2]][[3]]$x[[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]$y
316s [[2]][[3]]$y[[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s [1] "#second arg with default"
316s 
316s [[2]][[4]][[2]]
316s [[2]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[3]]
316s [[2]][[4]][[3]][[1]]
316s [1] "# first comment"
316s 
316s [[2]][[4]][[3]][[2]]
316s [[2]][[4]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[3]][[3]]
316s [[2]][[4]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[3]][[4]]
316s [[2]][[4]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[4]][[4]]
316s [[2]][[4]][[4]][[1]]
316s [1] "#second comment"
316s 
316s 
316s [[2]][[4]][[5]]
316s [[2]][[4]][[5]][[1]]
316s [1] "#lastcomment "
316s 
316s [[2]][[4]][[5]][[2]]
316s [[2]][[4]][[5]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[5]][[3]]
316s [[2]][[4]][[5]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[5]][[4]]
316s [[2]][[4]][[5]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s 
316s [[2]][[5]]
316s [[2]][[5]][[1]]
316s NULL
316s 
316s [[2]][[5]][[2]]
316s [[2]][[5]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[3]]
316s [[2]][[5]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[4]]
316s [[2]][[5]][[4]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[5]]
316s [[2]][[5]][[5]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[6]]
316s [[2]][[5]][[6]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[7]]
316s [[2]][[5]][[7]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[8]]
316s [[2]][[5]][[8]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[9]]
316s [[2]][[5]][[9]][[1]]
316s NULL
316s 
316s 
316s 
316s 
316s > 
316s > # "`for` loop"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "for(i #in counter\nin 1:10#incounter again\n) {x + y; # first comment\n; next; yo #second comment\n x / y; break; #lastcomment \n;}"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s [1] "#in counter"
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s [1] "#incounter again"
316s 
316s [[2]][[4]][[2]]
316s [[2]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[3]]
316s [[2]][[4]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[4]]
316s [[2]][[4]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[5]]
316s [[2]][[5]][[1]]
316s NULL
316s 
316s [[2]][[5]][[2]]
316s [[2]][[5]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[3]]
316s [[2]][[5]][[3]][[1]]
316s [1] "# first comment"
316s 
316s [[2]][[5]][[3]][[2]]
316s [[2]][[5]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[3]][[3]]
316s [[2]][[5]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[3]][[4]]
316s [[2]][[5]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[5]][[4]]
316s [[2]][[5]][[4]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[5]]
316s [[2]][[5]][[5]][[1]]
316s [1] "#second comment"
316s 
316s 
316s [[2]][[5]][[6]]
316s [[2]][[5]][[6]][[1]]
316s NULL
316s 
316s [[2]][[5]][[6]][[2]]
316s [[2]][[5]][[6]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[6]][[3]]
316s [[2]][[5]][[6]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[5]][[6]][[4]]
316s [[2]][[5]][[6]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[5]][[7]]
316s [[2]][[5]][[7]][[1]]
316s [1] "#lastcomment "
316s 
316s 
316s 
316s 
316s > 
316s > # "`if` statement"
316s > unitizer:::comm_extract(unitizer:::parse_with_comments(text = if.text))
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s [1] "# IFFY"
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s [1] "# ifcond"
316s 
316s [[2]][[3]][[2]]
316s [[2]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[3]]
316s [[2]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[4]]
316s [[2]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s NULL
316s 
316s [[2]][[4]][[2]]
316s [[2]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[3]]
316s [[2]][[4]][[3]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[5]]
316s [[2]][[5]][[1]]
316s [1] "#final"
316s 
316s 
316s 
316s > 
316s > # "formula"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = ". + x # hello\n#yowza\n~#bust a move\ny"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s [1] "# hello"
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[3]]
316s [[3]][[1]]
316s [1] "#yowza"
316s 
316s [[3]][[2]]
316s [[3]][[2]][[1]]
316s [1] "#bust a move"
316s 
316s 
316s [[3]][[3]]
316s [[3]][[3]][[1]]
316s NULL
316s 
316s 
316s 
316s > 
316s > # "`repeat`"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "repeat #first\n{runif(10); #comm\nbreak;}"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s [1] "#first"
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s NULL
316s 
316s [[2]][[3]][[2]]
316s [[2]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[3]]
316s [[2]][[3]][[3]][[1]]
316s [1] "#comm"
316s 
316s [[2]][[3]][[3]][[2]]
316s [[2]][[3]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[3]][[3]]
316s [[2]][[3]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[3]][[4]]
316s [[2]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s 
316s > 
316s > # "S4 slot"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(text = "test@#comment\nhello <- 3")
316s + )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s NULL
316s 
316s [[2]][[3]][[2]]
316s [[2]][[3]][[2]][[1]]
316s [1] "#comment"
316s 
316s 
316s [[2]][[3]][[3]]
316s [[2]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[4]]
316s [[2]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s > 
316s > #  "`while`"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "while(x > 5 # a comment\n) { hello; goodbye } #yay"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s NULL
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s [1] "# a comment"
316s 
316s [[2]][[3]][[2]]
316s [[2]][[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[3]]
316s [[2]][[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]][[4]]
316s [[2]][[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s NULL
316s 
316s [[2]][[4]][[2]]
316s [[2]][[4]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[3]]
316s [[2]][[4]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]][[4]]
316s [[2]][[4]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s 
316s > 
316s > txt2 <- "library(functools)\n    fun <- function(a=1, bravo, card=25, ..., xar=list(\"aurochs\", 1), z) {}\n\n    # Need to add tests:\n    # - with complex objects? (did I mean in the definition? Or the call??)\n    (NULL)\n    # These should be identical to match.call()\n\n    body(fun) <- parse(text=\"{print(match_call()); print(match.call())}\")\n\n    calls <- c(\n      'fun(54, \"hello\", \"wowo\", \"blergh\", 8, 9)',\n      'fun(54, \"hello\", \"wowo\", \"blergh\", a=8, z=9)',\n      'fun(54, \"hello\", z=\"wowo\", \"blergh\", 8, 9)',\n      'fun(54, \"hello\", z=\"wowo\", x=\"blergh\", 8, 9)',\n      'fun(54, c=\"hello\", z=\"wowo\", xar=3, 8, 9)'\n    )\n    invisible(lapply(calls, function(x){cat(\"-- New Call --\", x, sep=\"\n\"); eval(parse(text=x))}))\n  "
316s > test.comp <- unitizer:::comm_extract(unitizer:::parse_with_comments(text = txt2))
316s > 
316s > # "A more complex test"
316s > lapply(test.comp[4:5], `[[`, 1)
316s [[1]]
316s [1] "# Need to add tests:"                                                   
316s [2] "# - with complex objects? (did I mean in the definition? Or the call??)"
316s 
316s [[2]]
316s [1] "# These should be identical to match.call()"
316s 
316s > 
316s > # "Added SYMBOL_PACKAGE token"
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "# a comment before\nunitizer:::browse()  #a comment after"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s [1] "# a comment before" "#a comment after"  
316s 
316s 
316s > # "Added SYMBOL_PACKAGE token v2" 
316s > unitizer:::comm_extract(
316s +   unitizer:::parse_with_comments(
316s +     text = "# a comment before\nunitizer::browse()  #a comment after"
316s + ) )
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s [1] "# a comment before" "#a comment after"  
316s 
316s 
316s > # LBB used to break stuff
316s > txt3 <- "# This is an early comment\n    hello <- 25\n    # multi\n    hello[[1]]  # and another!"
316s > # "LBB test"
316s > unitizer:::comm_extract(unitizer:::parse_with_comments(text = txt3))
316s [[1]]
316s NULL
316s 
316s [[2]]
316s [[2]][[1]]
316s [1] "# This is an early comment"
316s 
316s [[2]][[2]]
316s [[2]][[2]][[1]]
316s NULL
316s 
316s 
316s [[2]][[3]]
316s [[2]][[3]][[1]]
316s NULL
316s 
316s 
316s [[2]][[4]]
316s [[2]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s [[3]]
316s [[3]][[1]]
316s [1] "# multi"        "# and another!"
316s 
316s [[3]][[2]]
316s [[3]][[2]][[1]]
316s NULL
316s 
316s 
316s [[3]][[3]]
316s [[3]][[3]][[1]]
316s NULL
316s 
316s 
316s [[3]][[4]]
316s [[3]][[4]][[1]]
316s NULL
316s 
316s 
316s 
316s > 
316s > # - "Weird missing comment on `res` works" -------------------------------------
316s > 
316s > txt3 <- "# Calls to `library` and assignments are not normally considered tests, so\n# you will not be prompted to review them\n\nlibrary(utzflm)\nx <- 1:100\ny <- x ^ 2\nres <- fastlm(x, y)\n\nres                     # first reviewable expression\nget_slope(res)\nget_rsq(res)\n\nfastlm(x, head(y))      # This should cause an error; press Y to add to store"
316s > expr <- unitizer:::parse_with_comments(text = txt3)
316s > my.unitizer <- new("unitizer", id = 1, zero.env = new.env())
316s > capture.output(my.unitizer <- my.unitizer + expr)
316s character(0)
316s > 
316s > lapply(unitizer:::as.list(my.unitizer@items.new), slot, "comment")
316s [[1]]
316s [1] "# Calls to `library` and assignments are not normally considered tests, so"
316s [2] "# you will not be prompted to review them"                                 
316s 
316s [[2]]
316s character(0)
316s 
316s [[3]]
316s character(0)
316s 
316s [[4]]
316s character(0)
316s 
316s [[5]]
316s [1] "# first reviewable expression"
316s 
316s [[6]]
316s character(0)
316s 
316s [[7]]
316s character(0)
316s 
316s [[8]]
316s [1] "# This should cause an error; press Y to add to store"
316s 
316s > 
316s > # - "exprlist excission with negative par ids" ---------------------------------
316s > 
316s > txt <- "# For random tests\n\nunitizer_sect(\"blah\", {\n  identity(1);\n})\n"
316s > prs.dat <- unitizer:::parse_dat_get(text = txt)$dat
316s > # set negative ids to be top level parents
316s > prs.dat <- transform(prs.dat, parent = ifelse(parent < 0, 0L, 
316s +     parent))
316s > prs.dat <- normalize_id(prs.dat)
316s > ancestry <- with(prs.dat, unitizer:::ancestry_descend(id, parent, 
316s +     0L))
316s > x <- unitizer:::prsdat_fix_exprlist(prs.dat, ancestry)
316s > unname(as.matrix(x[, 5:6]))
316s       [,1] [,2]
316s  [1,]    1    0
316s  [2,]   21    0
316s  [3,]    2    4
316s  [4,]    4   21
316s  [5,]    3   21
316s  [6,]    5    7
316s  [7,]    7   21
316s  [8,]    6   21
316s  [9,]   19   21
316s [10,]    8   19
316s [11,]   15   19
316s [12,]    9   11
316s [13,]   11   15
316s [14,]   10   15
316s [15,]   12   13
316s [16,]   13   15
316s [17,]   14   15
316s [18,]   18   19
316s [19,]   20   21
316s > 
316s > # - "empty symbols handled okay" -----------------------------------------------
316s > 
316s > # the empty second argument to `[` caused problems before
316s > txt <- "mtcars[1:10,]\n"
316s > # shouldn't cause error
316s > unitizer:::parse_with_comments(text = txt)
316s expression(mtcars[1:10,])
316s > 
316s > # - "uncommenting works" -------------------------------------------------------
316s > 
316s > unitizer:::uncomment(expr[[1]])
316s library(utzflm)
316s > 
316s > # "don't blow away function arg names"
316s > unitizer:::uncomment(quote(function(a, b) NULL))
316s function(a, b) NULL
316s > #
316s > # Recover comments and uncomment
316s > txt <- ".alike(  # FALSE, match.call disabled\n  quote(fun(b=fun2(x, y), 1, 3)),  # first sub.call\n  quote(fun(NULL, fun2(a, b), 1)), # second sub.call\n  alike_settings(lang.mode=1))"
316s > exp <- unitizer:::parse_with_comments(text = txt)
316s > candc <- unitizer:::comm_and_call_extract(exp)
316s > 
316s > candc$call[[1L]]
316s .alike(quote(fun(b = fun2(x, y), 1, 3)), quote(fun(NULL, fun2(a, 
316s     b), 1)), alike_settings(lang.mode = 1))
316s > 
316s > candc$comments
316s [1] "# FALSE, match.call disabled" "# first sub.call"            
316s [3] "# second sub.call"           
316s > 
316s > # - "failing parses produce proper errors" -------------------------------------
316s > 
316s > txt <- "this is a + syntax error that cannot be parsed"
316s > try(capture.output(unitizer:::parse_tests(text = txt), type = "message"))
316s Error in value[[3L]](cond) : 
316s   Unable to parse test file; see previous messages
316s > f <- tempfile()
316s > on.exit(unlink(f))
316s > cat(txt, "\n", sep = "", file = f)
316s > try(capture.output(unitizer:::parse_tests(f), type = "message"))
316s Error in value[[3L]](cond) : 
316s   Unable to parse test file; see previous messages
316s > # try in normal mode (just fall back to normal parse)
316s > try(unitizer:::parse_tests(text = txt, comments = FALSE))
316s Error in parse(text = text, keep.source = FALSE) : 
316s   <text>:1:6: unexpected symbol
316s 1: this is
316s          ^
316s > 
316s > any(
316s +   grepl(
316s +     "unexpected symbol",
316s +     capture.output(try(unitizer:::parse_tests(f, comments = FALSE)), type='message'),
316s + ) )
316s [1] TRUE
317s > 
317s > # - "NULL, constants, and new tokens" ------------------------------------------
317s > 
317s > # These were added with 3.6.3?  Previously, it seems that the equal assign did
317s > # not generate a master expression to wrap all the pieces, which means these
317s > # tests just don't work because all the eq_assign at the top level end up with
317s > # the same parent and the parser gets confused.
317s > 
317s > txt <- c("a = 2", "# ho how", "b = 3", "", "b + a  # oh here", 
317s +     "", "b + # oh there", "a   # bear", "", "NULL")
317s > if(getRversion() >= "3.6.3") {
317s +   identical(
317s +     unitizer:::comm_extract(unitizer:::parse_with_comments(text = txt)),
317s +     rds('parse-eq')
317s +   )
317s + } else TRUE
317s [1] TRUE
317s > 
317s > with.const <- unitizer:::parse_with_comments(text = "3 # comment on const")
317s > unitizer:::symb_mark_rem(with.const[[1]])
317s [1] 3
317s > 
317s > 
317s PASS
317s Begin testing t-prompt.R
317s 
317s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
317s Copyright (C) 2024 The R Foundation for Statistical Computing
317s Platform: arm-unknown-linux-gnueabihf (32-bit)
317s 
317s R is free software and comes with ABSOLUTELY NO WARRANTY.
317s You are welcome to redistribute it under certain conditions.
317s Type 'license()' or 'licence()' for distribution details.
317s 
317s R is a collaborative project with many contributors.
317s Type 'contributors()' for more information and
317s 'citation()' on how to cite R or R packages in publications.
317s 
317s Type 'demo()' for some demos, 'help()' for on-line help, or
317s 'help.start()' for an HTML browser interface to help.
317s Type 'q()' to quit R.
317s 
317s > source(file.path("_helper", "init.R"))
317s > 
317s > # - "read_line works" ----------------------------------------------------------
317s > 
317s > # read through prompt vals
317s > 
317s > unitizer:::read_line_set_vals(letters[1:3])
317s > u.ns <- asNamespace("unitizer")
317s > unitizer:::read_line()
317s a
317s [1] "a"
317s > identical(u.ns$.global$prompt.vals, letters[2:3])
317s [1] TRUE
317s > unitizer:::read_line()
317s b
317s [1] "b"
317s > u.ns$.global$prompt.vals
317s [1] "c"
317s > unitizer:::read_line()
317s c
317s [1] "c"
317s > u.ns$.global$prompt.vals
317s character(0)
317s > 
317s > try(unitizer:::read_line())
317s Error : Internal Error: ran out of predefined readline input; contact maintainer.
317s > 
317s > # - "simple prompts" -----------------------------------------------------------
317s > 
317s > unitizer:::read_line_set_vals(c("y", "Y", "n", "N"))
317s > try(unitizer:::simple_prompt(1:5))
317s Error in unitizer:::simple_prompt(1:5) : 
317s   Argument `message` must be character
317s > try(unitizer:::simple_prompt("hello", attempts = 1:5))
317s Error in unitizer:::simple_prompt("hello", attempts = 1:5) : 
317s   Argument `attempts` must be numeric(1L), not NA, and one or greater
317s > try(unitizer:::simple_prompt("hello", values = NA_character_))
317s Error in unitizer:::simple_prompt("hello", values = NA_character_) : 
317s   Argument `values` must be character with no NAs
317s > try(unitizer:::simple_prompt("hello", case.sensitive = 1))
317s Error in unitizer:::simple_prompt("hello", case.sensitive = 1) : 
317s   Argument `case.sensitive` must be TRUE or FALSE
317s > 
317s > unitizer:::simple_prompt("hello")
317s | hello
317s 
317s unitizer> y
317s [1] "Y"
317s > unitizer:::simple_prompt("hello")#
317s | hello
317s 
317s unitizer> Y
317s [1] "Y"
317s > unitizer:::simple_prompt("hello")
317s | hello
317s 
317s unitizer> n
317s [1] "N"
317s > unitizer:::read_line_set_vals(c("y", "y", "n"))
317s > try(unitizer:::simple_prompt("hello", attempts = 1L, case.sensitive = TRUE))
317s | hello
317s 
317s unitizer> y
317s | Invalid input, please select one of: Y, N
317s 
317s Error in unitizer:::simple_prompt("hello", attempts = 1L, case.sensitive = TRUE) : 
317s   Gave up trying to collect user input after 1 attempts.
317s > try(unitizer:::simple_prompt("hello", attempts = 1L, case.sensitive = TRUE),
317s +     silent = TRUE)
317s | hello
317s 
317s unitizer> y
317s | Invalid input, please select one of: Y, N
317s 
317s > try(unitizer:::simple_prompt("hello", attempts = 1L, case.sensitive = TRUE))
317s | hello
317s 
317s unitizer> n
317s | Invalid input, please select one of: Y, N
317s 
317s Error in unitizer:::simple_prompt("hello", attempts = 1L, case.sensitive = TRUE) : 
317s   Gave up trying to collect user input after 1 attempts.
317s > 
317s > # - "faux prompt" --------------------------------------------------------------
317s > 
317s > unitizer:::read_line_set_vals(c("1 +", "1"))
317s > unitizer:::faux_prompt(prompt = "> ", continue = "+ ")[[1L]]
317s > 1 +
317s + 1
317s 1 + 1
317s > unitizer:::read_line_set_vals(c("(})"))
317s > try(unitizer:::faux_prompt(prompt = "> ", continue = "+ "))
317s > (})
317s Error in "(})" : <text>:1:2: unexpected '}'
317s 1: (}
317s      ^
317s > 
317s > ## Test the new readLines based read_line
317s > ## This test will not work in interactive mode, requiring input
317s > unitizer:::read_line_set_vals(c("1 +", "1"))
317s > unitizer:::faux_prompt()
317s > 1 +
317s + 1
317s expression(1 + 1)
317s > 
317s > ## This one embeds a CTRL+C to test interrupt, but we can't test this without
317s > ## read_line_setvals
317s > unitizer:::read_line_set_vals(c("1 +", "\x03", "2 + ", "1"))
317s > unitizer:::faux_prompt()
317s > 1 +
317s + 
317s 
317s > 2 + 
317s + 1
317s expression(2 + 1)
317s > 
317s > unitizer:::read_line_set_vals(c("\x03", "2 + ", "1"))
317s > unitizer:::faux_prompt()
317s > 
317s 
317s 
317s | Type "Q" at the prompt to quit unitizer.
317s 
317s > 2 + 
317s + 1
317s expression(2 + 1)
317s > 
317s > ## Test that changing language doesn't affect partial parsing
317s > lang <- Sys.getenv("LANGUAGE", unset=NA)
317s > Sys.setenv("LANGUAGE"="fr")
317s > unitizer:::read_line_set_vals(c("1 +", "1"))
317s > unitizer:::faux_prompt(prompt = "> ", continue = "+ ")
317s > 1 +
317s + 1
317s expression(1 + 1)
317s > if(is.na(lang)) Sys.unsetenv("LANGUAGE") else Sys.setenv("LANGUAGE"=lang)
317s > 
317s > # - "unitizer prompt" ----------------------------------------------------------
317s > 
317s > # Some of this needs to be done outside of testthat due to sinking
317s > suppressWarnings(glob <- unitizer:::unitizerGlobal$new())
317s > unitizer:::read_line_set_vals(c("1 +", "1", "H", "Y"))
317s > unitizer:::unitizer_prompt(
317s +   "hello", valid.opts = c(Y = "[Y]es", N = "[N]o"), global = glob
317s + )
317s unitizer> 1 +
317s + 1
317s [1] 2
317s unitizer> H
317s 
317s | No help available.
317s | 
317s | hello ([Y]es, [N]o, [Q]uit, [H]elp)?
317s 
317s unitizer> Y
317s 
317s [1] "Y"
317s > 
317s > unitizer:::read_line_set_vals(c("1 +", "1", "H", "Q"))
317s > unitizer:::unitizer_prompt("hello",
317s +     valid.opts = c(Y = "[Y]es", N = "[N]o"), help = "This is all the help you get",
317s +     global = glob)
317s unitizer> 1 +
317s + 1
317s [1] 2
317s unitizer> H
317s 
317s | This is all the help you get
317s | 
317s | hello ([Y]es, [N]o, [Q]uit, [H]elp)?
317s 
317s unitizer> Q
317s 
317s [1] "Q"
317s > 
317s > unitizer:::read_line_set_vals(c("hell())", "Q"))
317s > txt3 <- unitizer:::capture_output(unitizer:::unitizer_prompt("hello",
317s +     valid.opts = c(Y = "[Y]es", N = "[N]o"), global = glob))
317s > txt3$message
317s [1] "Error in \"hell())\": <text>:1:7: unexpected ')'"
317s [2] "1: hell())"                                      
317s [3] "          ^"                                     
317s > 
317s > # and multiline stuff (#242)
317s > unitizer:::read_line_set_vals(c("{\n  1 + 1\n  2 + 1\n}", "N"))
317s > unitizer:::unitizer_prompt(
317s +   "hello", valid.opts = c(Y = "[Y]es", N = "[N]o"), global = glob
317s + )
317s unitizer> {
317s   1 + 1
317s   2 + 1
317s }
317s [1] 3
317s unitizer> N
317s 
317s [1] "N"
317s > 
317s > try(
317s +   unitizer:::unitizer_prompt(
317s +     "hello", valid.opts = c(Y = "[Y]es", N = "[N]o"),
317s +     browse.env = "not an env", global = glob
317s + ) )
317s Error in unitizer:::unitizer_prompt("hello", valid.opts = c(Y = "[Y]es",  : 
317s   Argument `browse.env` must be an environment
317s > 
317s > unitizer:::read_line_set_vals(character())
317s > try(
317s +   unitizer:::unitizer_prompt(
317s +     "hello", valid.opts = c(Y = "[Y]es", N = "[N]o"), global = glob
317s + ) )
317s Error : Internal Error: ran out of predefined readline input; contact maintainer.
317s > unitizer:::read_line_set_vals("1L")
317s > try(
317s +   unitizer:::unitizer_prompt(
317s +     "hello",
317s +     valid.opts = c(Y = "[Y]es", N = "[N]o"),
317s +     exit.condition = unitizer:::exit_fun,
317s +     valid.vals = 2:3, global = glob
317s + ) )
317s unitizer> 1L
317s | Type a number in `2:3` at the prompt
317s [1] 1
317s Error : Internal Error: ran out of predefined readline input; contact maintainer.
317s > unitizer:::read_line_set_vals("2L")
317s > unitizer:::unitizer_prompt("hello", valid.opts = c(Y = "[Y]es",
317s +     N = "[N]o"), exit.condition = unitizer:::exit_fun, valid.vals = 2:3,
317s +     global = glob)
317s unitizer> 2L
317s [1] 2
317s > 
317s > 
317s PASS
317s Begin testing t-random.R
317s 
317s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
317s Copyright (C) 2024 The R Foundation for Statistical Computing
317s Platform: arm-unknown-linux-gnueabihf (32-bit)
317s 
317s R is free software and comes with ABSOLUTELY NO WARRANTY.
317s You are welcome to redistribute it under certain conditions.
317s Type 'license()' or 'licence()' for distribution details.
317s 
317s R is a collaborative project with many contributors.
317s Type 'contributors()' for more information and
317s 'citation()' on how to cite R or R packages in publications.
317s 
317s Type 'demo()' for some demos, 'help()' for on-line help, or
317s 'help.start()' for an HTML browser interface to help.
317s Type 'q()' to quit R.
317s 
317s > source(file.path("_helper", "init.R"))
318s > 
318s > # - "random seed" --------------------------------------------------------------
318s > 
318s > dir <- file.path(TMP.DIR, "randdir")
318s > dir.create(dir)
318s > file <- file.path(dir, "randtest.R")
318s > cat("sample(1:100)\n", file = file)
318s > set.seed(1)
318s > coi(unitize(file, auto.accept = "new"))
318s Warning in history_capt(history, interactive.mode) :
318s   Unable to capture history in non-interactive mode.
318s | Auto-accepting changes...
318s | unitizer updated.
318s 
318s > # changing seed should have no effect on result
318s > set.seed(23)
318s > coi(res <- unitize(file))
318s Warning in history_capt(history, interactive.mode) :
318s   Unable to capture history in non-interactive mode.
319s | 1/1 test passed; nothing to review.
319s 
319s > # expect_equal(as.character(res$status), "Passed")
319s > as.character(res$status)
319s [1] "Passed"
319s > 
319s > 
319s PASS
319s Begin testing t-rename.R
319s 
319s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
319s Copyright (C) 2024 The R Foundation for Statistical Computing
319s Platform: arm-unknown-linux-gnueabihf (32-bit)
319s 
319s R is free software and comes with ABSOLUTELY NO WARRANTY.
319s You are welcome to redistribute it under certain conditions.
319s Type 'license()' or 'licence()' for distribution details.
319s 
319s R is a collaborative project with many contributors.
319s Type 'contributors()' for more information and
319s 'citation()' on how to cite R or R packages in publications.
319s 
319s Type 'demo()' for some demos, 'help()' for on-line help, or
319s 'help.start()' for an HTML browser interface to help.
319s Type 'q()' to quit R.
319s 
319s > source(file.path("_helper", "init.R"))
319s > 
319s > # - "Rename Works" -------------------------------------------------------------
319s > 
319s > x <- readRDS("_helper/unitizers/trivial.unitizer/data.rds")
319s > x.edit <- editCalls(x, quote(x), quote(y), interactive.only = FALSE)
319s Warning in .local(x, lang.old, lang.new, ...) :
319s   This is an experimental function; make sure you backup any unitizers before you edit them
319s > x.edit@items.ref.calls.deparse
319s [1] "TRUE"       "y <- 1 + 1" "y + 2"      "y <- y"     "y * y"     
319s [6] "y/y + 2"   
319s > !identical(x@items.ref.calls.deparse, x.edit@items.ref.calls.deparse)
319s [1] TRUE
319s > identical(
319s +   x.edit@items.ref.calls.deparse,
319s +   gsub("\\bx\\b", "y", x@items.ref.calls.deparse)
319s + )
319s [1] TRUE
319s > 
319s > # warn
319s > unitizer:::read_line_set_vals("Y")
319s > x.edit2 <- editCalls(x, quote(x), quote(y), interactive.mode = TRUE)
319s Warning in .local(x, lang.old, lang.new, ...) :
319s   This is an experimental function; make sure you backup any unitizers before you edit them
319s | Do you wish to proceed ([Y]es/[N]o)? 
319s 
319s unitizer> Y
319s > # message
319s > unitizer:::read_line_set_vals("N")
319s > x.edit3 <- editCalls(x, quote(x), quote(y), interactive.mode = TRUE)
319s Warning in .local(x, lang.old, lang.new, ...) :
319s   This is an experimental function; make sure you backup any unitizers before you edit them
319s | Do you wish to proceed ([Y]es/[N]o)? 
319s 
319s unitizer> N
319s Exiting without edits
319s > identical(x.edit3, x)
319s [1] TRUE
319s > 
319s > unitizer:::read_line_set_vals(NULL)
319s > x.edit@items.ref.calls.deparse
319s [1] "TRUE"       "y <- 1 + 1" "y + 2"      "y <- y"     "y * y"     
319s [6] "y/y + 2"   
319s > 
319s PASS
319s Begin testing t-repairenvs.R
319s 
319s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
319s Copyright (C) 2024 The R Foundation for Statistical Computing
319s Platform: arm-unknown-linux-gnueabihf (32-bit)
319s 
319s R is free software and comes with ABSOLUTELY NO WARRANTY.
319s You are welcome to redistribute it under certain conditions.
319s Type 'license()' or 'licence()' for distribution details.
319s 
319s R is a collaborative project with many contributors.
319s Type 'contributors()' for more information and
319s 'citation()' on how to cite R or R packages in publications.
319s 
319s Type 'demo()' for some demos, 'help()' for on-line help, or
319s 'help.start()' for an HTML browser interface to help.
319s Type 'q()' to quit R.
319s 
319s > source(file.path("_helper", "init.R"))
320s > 
320s > exps <- expression(1 + 1, a <- 54, b <- 38, a + b, e <- 5 * a,
320s +     a^2, f <- e * a, matrix(rep(f, 20)))
320s > my.unitizer <- new("unitizer", id = 1, zero.env = new.env())
320s > # add ref.exps as new items
320s > coi(my.unitizer <- my.unitizer + exps)
320s > my.unitizer2 <- new("unitizer", id = 2, zero.env = new.env())
320s > # now convert them to reference items
320s > coi(my.unitizer2 <- my.unitizer2 + my.unitizer@items.new)
320s > # - "messed up env ancestry repair works" --------------------------------------
320s > 
320s > # Purposefully mess up the environments
320s > parent.env(my.unitizer2@items.ref[[2]]@env) <- baseenv()
320s > x <- unitizer:::healEnvs(my.unitizer2@items.ref, my.unitizer2)
320s Error in parent.env(env) : the empty environment has no parent
320s Error in run_ls(env = x@env, stop.env = base.env, all.names = TRUE, store.env = ref.env.store) : 
320s   Specified `stop.env` does not appear to be in parent environments.
320s Warning in repairEnvs(items.final) :
320s   Detected corrupted environment history; we will attempt to repair, but keep in mind that even when repaired the test environments may be missleading.  For example, the objects other than `.new` or `.ref` when reviewing tests at the `unitzer` prompt may not be those you expect or those reported by `ls`.  To fully restore environments re-unitize with `unitize(..., force.update=TRUE)`.  If errors persist after an attempt to repair, please contact maintainer.
320s > old.opt <- options(unitizer.max.env.depth = 20)
320s > res <- unitizer:::healEnvs(my.unitizer2@items.ref, my.unitizer2)
320s Error in try(while (!identical(env, stop.env)) { : 
320s   Logic error: not finding `stop.env` after 20 iterations; contact package maintainer if this is an error.
320s Error in run_ls(env = x@env, stop.env = base.env, all.names = TRUE, store.env = ref.env.store) : 
320s   Specified `stop.env` does not appear to be in parent environments.
320s Warning in repairEnvs(items.final) :
320s   Detected corrupted environment history; we will attempt to repair, but keep in mind that even when repaired the test environments may be missleading.  For example, the objects other than `.new` or `.ref` when reviewing tests at the `unitzer` prompt may not be those you expect or those reported by `ls`.  To fully restore environments re-unitize with `unitize(..., force.update=TRUE)`.  If errors persist after an attempt to repair, please contact maintainer.
320s > is(res, "unitizerItems")
320s [1] TRUE
320s > ref.anc <- unitizer:::env_ancestry(x@base.env)
320s > itm.anc <- unitizer:::env_ancestry(x[[1L]]@env)
320s > # Items should belong to base env for reference
320s > identical(rev(ref.anc), head(rev(itm.anc), length(ref.anc)))
320s [1] TRUE
320s > options(old.opt)
320s > 
320s > # - "re-assigning to ignored environments handled properly" --------------------
320s > 
320s > # now `a + b` could try to re-assign to `a <- 54`, but that is same env as
320s > # `a + b` b/c it is ignored
320s > items.picked <- my.unitizer@items.new[-3L]
320s > # expect_error(items.heal <- unitizer:::healEnvs(items.picked,
320s > #     my.unitizer), NA)
320s > # no error
320s > items.heal <- unitizer:::healEnvs(items.picked, my.unitizer)
320s > 
320s > # - "full repair process works" ------------------------------------------------
320s > 
320s > # copy files and then try messing up environment for the object
320s > file_test("-d", file.path("_helper"))
320s [1] TRUE
320s > store <- file.path("_helper", "unitizers", "trivial.unitizer")
320s > store.new <- file.path(TMP.DIR, store)
320s > dir.create(store.new, recursive = TRUE)
320s > cpy.files <- c(
320s +   list.files(store, full.names = TRUE),
320s +   file.path("helper", "unitizers", "trivial.R")
320s + )
320s > file.copy(cpy.files, file.path(TMP.DIR, cpy.files), overwrite = TRUE)
320s [1]  TRUE FALSE
320s > 
320s > untz <- unitizer:::load_unitizers(
320s +   list(store.new), NA_character_,
320s +   par.frame = .GlobalEnv, interactive.mode = TRUE, mode = "unitize",
320s +   show.progress=0L, transcript=FALSE
320s + )
320s Warning in unitizer:::load_unitizers(list(store.new), NA_character_, par.frame = .GlobalEnv,  :
320s   Upgraded test file does not match original test file ('trivial.R' vs 'NA').
320s Warning in .Object$initialize(...) :
320s   Instantiated global object without global namespace registry; you should only see this warning you are using `repair_environments`.
320s > # Break env chain, store, and reload
320s > untz[[1L]]@items.ref.calls.deparse[[5L]]
320s [1] "y * x"
320s > parent.env(untz[[1L]]@items.ref[[5L]]@env) <- baseenv()
320s > # warning
320s > unitizer:::store_unitizer(untz[[1L]])
320s | unitizer updated.
320s 
320s > untz.rep <- repair_environments(store.new)
320s Warning in .Object$initialize(...) :
320s   Instantiated global object without global namespace registry; you should only see this warning you are using `repair_environments`.
320s Warning in repairEnvs(x@items.ref) :
320s   Detected corrupted environment history; we will attempt to repair, but keep in mind that even when repaired the test environments may be missleading.  For example, the objects other than `.new` or `.ref` when reviewing tests at the `unitzer` prompt may not be those you expect or those reported by `ls`.  To fully restore environments re-unitize with `unitize(..., force.update=TRUE)`.  If errors persist after an attempt to repair, please contact maintainer.
320s | unitizer updated.
320s 
320s > # this should not give warnings
320s > unitizer:::healEnvs(untz.rep@items.ref, untz.rep)
320s An object of class "unitizerItems"
320s Slot "base.env":
320s <environment: 0x31b9d38>
320s 
320s Slot ".items":
320s [[1]]
320s ~~~ Reference Test ~~~
320s TRUE
320s * value: logi[1]
320s * output: 9 chars
320s 
320s Access components with `$`, e.g. `.REF$value`; see `help("$", "unitizer")`
320s 
320s [[2]]
320s ~~~ Reference Test ~~~
320s x <- 1 + 1
320s * value: unitizerDummy
320s 
320s Access components with `$`, e.g. `.REF$value`; see `help("$", "unitizer")`
320s 
320s [[3]]
320s ~~~ Reference Test ~~~
320s x + 2
320s * value: num[1]
320s * output: 6 chars
320s 
320s Access components with `$`, e.g. `.REF$value`; see `help("$", "unitizer")`
320s 
320s [[4]]
320s ~~~ Reference Test ~~~
320s y <- x
320s * value: unitizerDummy
320s 
320s Access components with `$`, e.g. `.REF$value`; see `help("$", "unitizer")`
320s 
320s [[5]]
320s ~~~ Reference Test ~~~
320s y * x
320s * value: num[1]
320s * output: 6 chars
320s 
320s Access components with `$`, e.g. `.REF$value`; see `help("$", "unitizer")`
320s 
320s [[6]]
320s ~~~ Reference Test ~~~
320s y/x + 2
320s * value: num[1]
320s * output: 6 chars
320s 
320s Access components with `$`, e.g. `.REF$value`; see `help("$", "unitizer")`
320s 
320s 
320s Slot ".pointer":
320s [1] 0
320s 
320s Slot ".seek.fwd":
320s [1] TRUE
320s 
320s > 
320s > 
320s PASS
320s Begin testing t-search.R
320s 
320s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
320s Copyright (C) 2024 The R Foundation for Statistical Computing
320s Platform: arm-unknown-linux-gnueabihf (32-bit)
320s 
320s R is free software and comes with ABSOLUTELY NO WARRANTY.
320s You are welcome to redistribute it under certain conditions.
320s Type 'license()' or 'licence()' for distribution details.
320s 
320s R is a collaborative project with many contributors.
320s Type 'contributors()' for more information and
320s 'citation()' on how to cite R or R packages in publications.
320s 
320s Type 'demo()' for some demos, 'help()' for on-line help, or
320s 'help.start()' for an HTML browser interface to help.
320s Type 'q()' to quit R.
320s 
320s > source(file.path("_helper", "init.R"))
321s > source(file.path("_helper", "pkgs.R"))
321s Install Packages
324s Setup Demos
324s > 
324s > unitizer.dummy.list <- list(A = 1, B = 2, C = 3)
324s > unitizer.dummy.list.2 <- list(A = 13, B = 24, C = 35)
324s > # can't unload `unitizer`, ruins `covr`
324s > try(detach("package:unitizer"), silent = TRUE)
324s > try(detach("package:unitizerdummypkg1", unload = TRUE), silent = TRUE)
324s > try(detach("package:unitizerdummypkg2", unload = TRUE), silent = TRUE)
324s > while ("unitizer.dummy.list" %in% search()) try(detach("unitizer.dummy.list"))
324s > state.set <- setNames(rep(2L, length(unitizer:::.unitizer.global.settings.names)),
324s +     unitizer:::.unitizer.global.settings.names)
324s > library(unitizer)
324s > library(unitizerdummypkg1, lib.loc = TMP.LIB)
324s > library(unitizerdummypkg2, lib.loc = TMP.LIB)
324s > 
324s > # - "Detecting packages" -------------------------------------------------------
324s > 
324s > unitizer:::is.loaded_package("package:unitizer")
324s [1] TRUE
324s > unitizer:::is.loaded_package("unitizer")   # FALSE
324s [1] FALSE
324s > unitizer:::is.loaded_package("package:stats")
324s [1] TRUE
324s > try(unitizer:::is.loaded_package(1))
324s Error in unitizer:::is.loaded_package(1) : 
324s   Argument `pkg.name` must be character 1L
324s > try(unitizer:::is.loaded_package(letters))
324s Error in unitizer:::is.loaded_package(letters) : 
324s   Argument `pkg.name` must be character 1L
324s > unitizer:::is.loaded_package("Autoloads")  # FALSE
324s [1] FALSE
324s > is.list(pkg.dat <- unitizer:::get_package_data())
324s [1] TRUE
324s > all(
324s +   vapply(
324s +     pkg.dat, function(x) is.list(x) && identical(names(x),
324s +     c("names", "lib.loc", "version")), logical(1L)
324s + ) )
324s [1] TRUE
324s > 
324s > # - "Path Compression" ---------------------------------------------------------
324s > 
324s > search.init.full <- unitizer:::search_as_envs()
324s > search.init <- search.init.full$search.path
324s > 
324s > head(unitizer:::compress_search_data(search.init.full), 3L)
324s [1] ".GlobalEnv"                       "package:unitizerdummypkg2 (v0.1)"
324s [3] "package:unitizerdummypkg1 (v0.1)"
324s > 
324s > # - "Moving Objects on Search Path Works" --------------------------------------
324s > 
324s > if (length(search.init) < 6L) stop("Unexpetedly short search path")
324s > untz.glob <- unitizer:::unitizerGlobal$new(enable.which = state.set,
324s +     set.global = TRUE)
324s > 
324s > try(unitizer:::move_on_path(5L, 2L, untz.glob))
324s Error in unitizer:::move_on_path(5L, 2L, untz.glob) : 
324s   old.pos > new.pos is not TRUE
324s > try(unitizer:::move_on_path(1L, 2L, untz.glob))
324s Error in unitizer:::move_on_path(1L, 2L, untz.glob) : 
324s   new.pos > 1L is not TRUE
324s > unitizer:::move_on_path(2L, 5L, untz.glob)
324s > # can't compare actual environments as they change when detached and
324s > # re-attached
324s > 
324s > all.equal(
324s +   names(unitizer:::search_as_envs()$search.path),
324s +   names(search.init[c(1L, 5L, 2L:4L, 6L:length(search.init))])
324s + )
324s [1] TRUE
324s > # Now let's undo the previous move, by pushing second pack back to
324s > # original position
324s > for (i in rep(5L, 3L)) unitizer:::move_on_path(2L, 5L, untz.glob)
324s > unitizer:::search_dat_equal(unitizer:::search_as_envs(), search.init.full)
324s [1] TRUE
324s > untz.glob$release()
324s > 
324s > # - "Search Path Journaling Works" ---------------------------------------------
324s > 
324s > try(detach("package:unitizer"), silent = TRUE)
324s > try(detach("package:unitizerdummypkg1", unload = TRUE), silent = TRUE)
324s > try(detach("package:unitizerdummypkg2", unload = TRUE), silent = TRUE)
324s > library(unitizer)
324s > # Initialize a global tracking object.  Doing it funny here because we don't
324s > # want to run the search_path_trim command yet, and that would happen if we
324s > # did a normal init
324s > # will be modified later
324s > search.ref <- NULL
324s > search.init <- unitizer:::search_as_envs()
324s > untz.glob <- unitizer:::unitizerGlobal$new(enable.which = state.set,
324s +     set.global = TRUE)
324s > 
324s > stat.tpl <- new("unitizerGlobalStatus", search.path = 2L, working.directory = 2L,
324s +     options = 2L, random.seed = 2L, namespaces = 2L)
324s > # these need to be done outside of `test_that` b/c `test_that` sets the
324s > # rlang_trace_top_env option
324s > st.0 <- untz.glob$indices.last
324s > st.1 <- untz.glob$state()
324s > 
324s > # Note, these are intended to be run without the shimming in place
324s > identical(untz.glob$status, stat.tpl)
324s [1] TRUE
324s > 
324s > # state should only be recorded if it changes
324s > st.0
324s An object of class "unitizerGlobalIndices"
324s Slot "search.path":
324s [1] 1
324s 
324s Slot "options":
324s [1] 1
324s 
324s Slot "working.directory":
324s [1] 1
324s 
324s Slot "random.seed":
324s [1] 1
324s 
324s Slot "namespaces":
324s [1] 1
324s 
324s > identical(st.0, st.1)
324s [1] TRUE
324s > # Add a package
324s > library("unitizerdummypkg1", lib.loc = TMP.LIB)
324s > st.2 <- untz.glob$state()
324s > # have two recorded states
324s > st.2@search.path
324s [1] 2
324s > # should have one more item
324s > diff(sapply(untz.glob$tracking@search.path, function(x) length(x$search.path)))
324s [1] 1
324s > environmentName(untz.glob$tracking@search.path[[2L]]$search.path[[2L]])
324s [1] "package:unitizerdummypkg1"
324s > sp.tmp <- untz.glob$tracking@search.path
324s > # note we compare attribute separately because subsetting drops them
324s > identical(sp.tmp[[1L]]$search.path, sp.tmp[[2L]]$search.path[-2L])
324s [1] TRUE
324s > 
324s > identical(
324s +   sp.tmp[[1L]]$ns.dat,
324s +   sp.tmp[[2L]]$ns.dat[names(sp.tmp[[2L]]$ns.dat) != "unitizerdummypkg1"]
324s + )
324s [1] TRUE
324s > # Add another package at a different position
324s > library("unitizerdummypkg2", pos = 4L, lib.loc = TMP.LIB)
324s > st.3 <- untz.glob$state()
324s > diff(sapply(untz.glob$tracking@search.path, function(x) length(x$search.path)))
324s [1] 1 1
324s > environmentName(
324s +   untz.glob$tracking@search.path[[st.3@search.path]]$search.path[[4L]]
324s + )
324s [1] "package:unitizerdummypkg2"
324s > # Attach a list
324s > attach(unitizer.dummy.list)
324s > search.ref <- untz.glob$state()
324s > environmentName(
324s +   untz.glob$tracking@search.path[[search.ref@search.path]]$search.path[[2L]]
324s + )
324s [1] "unitizer.dummy.list"
324s > identical(
324s +   as.list(
324s +     untz.glob$tracking@search.path[[search.ref@search.path]]$search.path[[2L]]
324s +   ),
324s +   unitizer.dummy.list
324s + )
324s [1] TRUE
324s > # And one more, but modified
324s > unitizer.dummy.list.2 <- list(A = 13, B = 24, C = 35)
324s > attach(unitizer.dummy.list.2, pos = 4L, name = "unitizer.dummy.list")
324s The following objects are masked _by_ unitizer.dummy.list (pos = 2):
324s 
324s     A, B, C
324s 
324s > st.4 <- untz.glob$state()
324s > curr.sp.ind <- untz.glob$indices.last@search.path
324s > environmentName(untz.glob$tracking@search.path[[curr.sp.ind]]$search.path[[4L]])
324s [1] "unitizer.dummy.list"
324s > # Make sure search path is lining up
324s > all.equal(
324s +   names(untz.glob$tracking@search.path[[curr.sp.ind]]$search.path), search()
324s + )
324s [1] TRUE
324s > identical(
324s +   as.list(untz.glob$tracking@search.path[[curr.sp.ind]]$search.path[[4L]]),
324s +   unitizer.dummy.list.2
324s + )
324s [1] TRUE
324s > identical(
324s +   as.list(untz.glob$tracking@search.path[[curr.sp.ind]]$search.path[[2L]]),
324s +   unitizer.dummy.list
324s + )
324s [1] TRUE
324s > # should still point to same environment
324s > identical(
324s +   untz.glob$tracking@search.path[[curr.sp.ind - 1L]]$search.path[[2L]],
324s +   untz.glob$tracking@search.path[[curr.sp.ind]]$search.path[[2L]]
324s + )
324s [1] TRUE
324s > # state shouldn't have changed
324s > identical(untz.glob$state(), st.4)
324s [1] TRUE
324s > 
324s > # detach some stuff
324s > # this is the first list
324s > detach(2L)
324s > untz.glob$state()
324s An object of class "unitizerGlobalIndices"
324s Slot "search.path":
324s [1] 6
324s 
324s Slot "options":
324s [1] 1
324s 
324s Slot "working.directory":
324s [1] 1
324s 
324s Slot "random.seed":
324s [1] 1
324s 
324s Slot "namespaces":
324s [1] 3
324s 
324s > curr.sp.ind <- untz.glob$indices.last@search.path
324s > identical(
324s +   untz.glob$tracking@search.path[[curr.sp.ind]]$search.path,
324s +   untz.glob$tracking@search.path[[curr.sp.ind - 1L]]$search.path[-2L]
324s + )
324s [1] TRUE
324s > detach("package:unitizerdummypkg2")
324s > untz.glob$state()
324s An object of class "unitizerGlobalIndices"
324s Slot "search.path":
324s [1] 7
324s 
324s Slot "options":
324s [1] 1
324s 
324s Slot "working.directory":
324s [1] 1
324s 
324s Slot "random.seed":
324s [1] 1
324s 
324s Slot "namespaces":
324s [1] 3
324s 
324s > curr.sp.ind <- untz.glob$indices.last@search.path
324s > identical(
324s +   untz.glob$tracking@search.path[[curr.sp.ind]]$search.path,
324s +   untz.glob$tracking@search.path[[curr.sp.ind - 1L]]$search.path[-5L]
324s + )
324s [1] TRUE
324s > 
324s > # - "Resetting search path" ----------------------------------------------------
324s > 
324s > identical(
324s +   as.list(as.environment("unitizer.dummy.list")), unitizer.dummy.list.2
324s + )
324s [1] TRUE
324s > # set to just after we added the original dummy list
324s > untz.glob$reset(search.ref)
324s An object of class "unitizerGlobalIndices"
324s Slot "search.path":
324s [1] 4
324s 
324s Slot "options":
324s [1] 1
324s 
324s Slot "working.directory":
324s [1] 1
324s 
324s Slot "random.seed":
324s [1] 1
324s 
324s Slot "namespaces":
324s [1] 3
324s 
324s > identical(as.list(as.environment("unitizer.dummy.list")), unitizer.dummy.list)
324s [1] TRUE
324s > # Confirm we actually set to expected path
324s > # NOTE: not sure if with updates this can work
324s > all.equal(
324s +   names(unitizer:::search_as_envs()$search.path),
324s +   names(untz.glob$tracking@search.path[[search.ref@search.path]]$search.path)
324s + )
324s [1] TRUE
324s > # Reset to very beginning
324s > untz.glob$resetFull()
324s An object of class "unitizerGlobalIndices"
324s Slot "search.path":
324s [1] 1
324s 
324s Slot "options":
324s [1] 1
324s 
324s Slot "working.directory":
324s [1] 1
324s 
324s Slot "random.seed":
324s [1] 1
324s 
324s Slot "namespaces":
324s [1] 1
324s 
324s > untz.glob$release()
324s > # compare with all.equal to make sure we use S4 method
324s > unitizer:::search_dat_equal(unitizer:::search_as_envs(), search.init)
324s [1] TRUE
324s > 
324s > # - "Search Path Trim / Restore" -----------------------------------------------
324s > 
324s > search.init <- unitizer:::search_as_envs()
324s > untz.glob <- unitizer:::unitizerGlobal$new(enable.which = state.set,
324s +     set.global = TRUE)
324s > library(unitizerdummypkg1, lib.loc = TMP.LIB)
324s > library(unitizerdummypkg2, lib.loc = TMP.LIB)
325s > unitizer:::search_path_trim(global = untz.glob)
325s > untz.glob$state()
325s An object of class "unitizerGlobalIndices"
325s Slot "search.path":
325s [1] 2
325s 
325s Slot "options":
325s [1] 1
325s 
325s Slot "working.directory":
325s [1] 1
325s 
325s Slot "random.seed":
325s [1] 1
325s 
325s Slot "namespaces":
325s [1] 2
325s 
325s > sp.keep <- unitizer:::keep_sp_default()
325s > identical(
325s +   search(), 
325s +   sp.keep[match(names(search.init$search.path), sp.keep, nomatch = 0L)]
325s + )
325s [1] TRUE
325s > untz.glob$resetFull()
325s An object of class "unitizerGlobalIndices"
325s Slot "search.path":
325s [1] 1
325s 
325s Slot "options":
325s [1] 1
325s 
325s Slot "working.directory":
325s [1] 1
325s 
325s Slot "random.seed":
325s [1] 1
325s 
325s Slot "namespaces":
325s [1] 1
325s 
325s > untz.glob$release()
325s > unitizer:::search_dat_equal(unitizer:::search_as_envs(), search.init)
325s [1] TRUE
325s > try(detach("package:unitizerdummypkg1", unload = TRUE), silent = TRUE)
325s > try(detach("package:unitizerdummypkg2", unload = TRUE), silent = TRUE)
325s > while ("unitizer.dummy.list" %in% search()) try(detach("unitizer.dummy.list"))
325s > 
325s > # - "Loaded Namespaces don't cause issues" -------------------------------------
325s > 
325s > # had a problem earlier trying to re-attach namespaces
325s > loadNamespace("unitizerdummypkg1", lib.loc = TMP.LIB)
325s <environment: namespace:unitizerdummypkg1>
325s > untz.glob <- unitizer:::unitizerGlobal$new(enable.which = state.set,
325s +     set.global = TRUE)
325s > unitizer:::search_path_trim(global = untz.glob)
325s > unitizer:::namespace_trim(global = untz.glob)
325s > untz.glob$state()
325s An object of class "unitizerGlobalIndices"
325s Slot "search.path":
325s [1] 2
325s 
325s Slot "options":
325s [1] 1
325s 
325s Slot "working.directory":
325s [1] 1
325s 
325s Slot "random.seed":
325s [1] 1
325s 
325s Slot "namespaces":
325s [1] 2
325s 
325s > loadNamespace("unitizerdummypkg2", lib.loc = TMP.LIB)
325s <environment: namespace:unitizerdummypkg2>
325s > untz.glob$state()
325s An object of class "unitizerGlobalIndices"
325s Slot "search.path":
325s [1] 3
325s 
325s Slot "options":
325s [1] 1
325s 
325s Slot "working.directory":
325s [1] 1
325s 
325s Slot "random.seed":
325s [1] 1
325s 
325s Slot "namespaces":
325s [1] 3
325s 
325s > "unitizerdummypkg1" %in% loadedNamespaces()  # FALSE
325s [1] FALSE
325s > "unitizerdummypkg2" %in% loadedNamespaces()
325s [1] TRUE
325s > untz.glob$resetFull()
325s An object of class "unitizerGlobalIndices"
325s Slot "search.path":
325s [1] 1
325s 
325s Slot "options":
325s [1] 1
325s 
325s Slot "working.directory":
325s [1] 1
325s 
325s Slot "random.seed":
325s [1] 1
325s 
325s Slot "namespaces":
325s [1] 1
325s 
325s > untz.glob$release()
325s > "unitizerdummypkg1" %in% loadedNamespaces()
325s [1] TRUE
325s > "unitizerdummypkg2" %in% loadedNamespaces()  # FALSE
325s [1] FALSE
325s > unloadNamespace("unitizerdummypkg1")
325s > 
325s > # - "Prevent Namespace Unload Works" -------------------------------------------
325s > 
325s > old.opt <- options(unitizer.namespace.keep = "unitizerdummypkg1")
325s > loadNamespace("unitizerdummypkg1", lib.loc = TMP.LIB)
325s <environment: namespace:unitizerdummypkg1>
325s > glb <- unitizer:::unitizerGlobal$new(set.global = TRUE)
325s > glb$status@options <- 2L
325s > unitizer:::unload_namespaces("unitizerdummypkg1", global = glb)
325s NULL
325s > glb$ns.opt.conflict@conflict
325s [1] TRUE
325s > glb$ns.opt.conflict@namespaces
325s [1] "unitizerdummypkg1"
325s > unloadNamespace("unitizerdummypkg1")
325s > options(old.opt)
325s > glb$release()
325s > 
325s > # - "Generate unique names" ----------------------------------------------------
325s > 
325s > unitizer:::unitizerUniqueNames(list(search.path = c(goodbye = "0",
325s +     hello = "1", goodbye = "2", goodbye = "3")))
325s [1] "goodbye"   "hello"     "goodbye.1" "goodbye.2"
325s > 
325s > # - "Fake Package Re-attach" ---------------------------------------------------
325s > 
325s > # Make sure that aspects of search path management other than search path
325s > # survive a failure caused by bad search path env (#252, #253).
325s > 
325s > owd <- getwd()
325s > test.f <- paste0(tempfile(), ".R")
325s > writeLines("
325s + f <- tempfile()
325s + dir.create(f)
325s + setwd(f)
325s + # Package assumed non-existing; R could disallow this in the future
325s + # which could change the test.
325s + attach(list(x=42), name='package:adfaadcxuqyojfnkfadsf')
325s + 1 + 1", test.f)
325s > out <- unitizer:::capture_output(
325s +   try(unitize(test.f, state='recommended', interactive.mode=FALSE))
325s + )
325s > any(grepl("mismatch between actual search path and tracked", out$message))
325s [1] TRUE
325s > identical(owd, getwd())  # confirm working directory restored
325s [1] TRUE
325s > 
325s > 
325s PASS
325s Begin testing t-section.R
325s 
325s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
325s Copyright (C) 2024 The R Foundation for Statistical Computing
325s Platform: arm-unknown-linux-gnueabihf (32-bit)
325s 
325s R is free software and comes with ABSOLUTELY NO WARRANTY.
325s You are welcome to redistribute it under certain conditions.
325s Type 'license()' or 'licence()' for distribution details.
325s 
325s R is a collaborative project with many contributors.
325s Type 'contributors()' for more information and
325s 'citation()' on how to cite R or R packages in publications.
325s 
325s Type 'demo()' for some demos, 'help()' for on-line help, or
325s 'help.start()' for an HTML browser interface to help.
325s Type 'q()' to quit R.
325s 
325s > source(file.path("_helper", "init.R"))
326s > 
326s > expr.1 <- expression(1 + 1, b <- 5, matrix(integer(), nrow = b,
326s +     ncol = b))
326s > expr.2 <- {
326s +     1 + 1
326s +     b <- 5
326s +     matrix(integer(), nrow = b, ncol = b)
326s + }
326s > expr.3 <- quote(expression(1 + 1, b <- 5, matrix(integer(), nrow = b,
326s +     ncol = b)))
326s > expr.4 <- quote({
326s +     1 + 1
326s +     b <- 5
326s +     matrix(integer(), nrow = b, ncol = b)
326s + })
326s > # - "simple tests" -------------------------------------------------------------
326s > 
326s > try(unitizer_sect(1:3))
326s Error in unitizer_sect(1:3) : 
326s   Argument `title` must be a 1 length character vector.
326s > try(unitizer_sect(letters))
326s Error in unitizer_sect(letters) : 
326s   Argument `title` must be a 1 length character vector.
326s > try(unitizer_sect("mytest", expr.1, 1:3))
326s Error in unitizer_sect("mytest", expr.1, 1:3) : 
326s   Argument `details` must be character
326s > # note the following two produce error messages, but it's not actually an error,
326s > # it's just that there are multiple errors and `expect_error` only suppresses
326s > # the last one, not the preceding ones.
326s > try(unitizer_sect("mytest", expr.1, letters, letters))
326s Error in unitizer_sect("mytest", expr.1, letters, letters) : 
326s   Argument `compare` must be "testFuns" or a function
326s > try(unitizer_sect("mytest", expr.1, letters, identity))
326s Error in unitizer_sect("mytest", expr.1, letters, identity) : 
326s   Argument `compare`, if a function, must accept two arguments and require no more than two (does not have at least two arguments)
326s > try(unitizer_sect("mytest", expr.2))
326s Error in unitizer_sect("mytest", expr.2) : 
326s   Argument `expr` must be an expression, or an unevaluated call that evaluates to an expression or `{`.
326s > try(unitizer_sect("mytest", matrix(1:9, nrow = 3)))
326s Error in unitizer_sect("mytest", matrix(1:9, nrow = 3)) : 
326s   Argument `expr` must be an expression, or an unevaluated call that evaluates to an expression or `{`.
326s > is(sect.1 <- unitizer_sect("mytest", expr.1), "unitizerSectionExpression")
326s [1] TRUE
326s > identical(unitizer:::as.expression(sect.1), expr.1)
326s [1] TRUE
326s > 
326s > is(sect.2 <- unitizer_sect("mytest", {
326s +     1 + 1
326s +     b <- 5
326s +     matrix(integer(), nrow = b, ncol = b)
326s + }), "unitizerSectionExpression")
326s [1] TRUE
326s > identical(sect.1, sect.2)
326s [1] TRUE
326s > is(sect.3 <- unitizer_sect("mytest", expr.3), "unitizerSectionExpression")
326s [1] TRUE
326s > identical(sect.1, sect.3)
326s [1] TRUE
326s > is(sect.4 <- unitizer_sect("mytest", expr.4), "unitizerSectionExpression")
326s [1] TRUE
326s > identical(sect.1, sect.4)
326s [1] TRUE
326s > is(sect.5 <- unitizer_sect("mytest", expression(1 + 1,
326s +     b <- 5, matrix(integer(), nrow = b, ncol = b))), "unitizerSectionExpression")
326s [1] TRUE
326s > identical(sect.1, sect.5)
326s [1] TRUE
326s > is(sect.1 <- unitizer_sect("mytest", expr.1, compare = identical),
326s +     "unitizerSectionExpression")
326s [1] TRUE
326s > unitizer_sect("hello")  # warn
326s Warning in unitizer_sect("hello") : `unitizer_sect` "hello" is empty.
326s NULL
326s > 
326s > # - "Custom Comparison Functions" ----------------------------------------------
326s > 
326s > # Run expressions with different comparison functions
326s > set.seed(1)
326s > expr.1 <- expression(50 + runif(1)/10^10, message("Hello There",
326s +     runif(1)), cat("Hello there", runif(1)), stop("Yo", runif(1)))
326s > expr.2 <- expression(50 + runif(1)/10^10, message("Hello There",
326s +     runif(1)), cat("Hello there", runif(1)), stop("Yo", runif(1)))
326s > expr.3 <- expression(unitizer_sect("change comp funs", compare = identical,
326s +     {
326s +         50 + runif(1)/10^10
326s +         message("Hello There", runif(1))
326s +         cat("Hello there", runif(1))
326s +         stop("Yo", runif(1))
326s +     }))
326s > expr.4 <- expression(
326s +   unitizer_sect(
326s +     "change comp funs",
326s +     compare = testFuns(
326s +       value = identical, output = all.equal, message = all.equal,
326s +       conditions = function(x, y) TRUE),
326s +       {
326s +         50 + runif(1)/10^10
326s +         message("Hello There", runif(1))
326s +         cat("Hello there", runif(1))
326s +         stop("Yo", runif(1))
326s + }))
326s > my.unitizer <- new("unitizer", id = 1, zero.env = new.env())
326s > coi(my.unitizer <- my.unitizer + expr.1)
326s > my.unitizer2 <- new("unitizer", id = 2, zero.env = new.env())
326s > # make previous items into reference items
326s > coi(my.unitizer2 <- my.unitizer2 + my.unitizer@items.new)
326s > # now add back items to compare
326s > coi(my.unitizer2 <- my.unitizer2 + expr.2)
326s > my.unitizer3 <- new("unitizer", id = 3, zero.env = new.env())
326s > # make previous items into reference items
326s > coi(my.unitizer3 <- my.unitizer3 + my.unitizer@items.new)
326s > # now add back items to compare
326s > coi(my.unitizer3 <- my.unitizer3 + expr.3)
326s > my.unitizer4 <- new("unitizer", id = 4, zero.env = new.env())
326s > # make previous items into reference items
326s > coi(my.unitizer4 <- my.unitizer4 + my.unitizer@items.new)
326s > # now add back items to compare
326s > coi(my.unitizer4 <- my.unitizer4 + expr.4)
326s > 
326s > my.unitizer2@tests.result
326s      value conditions output message aborted
326s [1,]  TRUE       TRUE   TRUE    TRUE    TRUE
326s [2,]  TRUE      FALSE   TRUE    TRUE    TRUE
326s [3,]  TRUE       TRUE   TRUE    TRUE    TRUE
326s [4,]  TRUE      FALSE   TRUE    TRUE    TRUE
326s > my.unitizer3@tests.result
326s      value conditions output message aborted
326s [1,] FALSE       TRUE   TRUE    TRUE    TRUE
326s [2,]  TRUE      FALSE   TRUE    TRUE    TRUE
326s [3,]  TRUE       TRUE   TRUE    TRUE    TRUE
326s [4,]  TRUE      FALSE   TRUE    TRUE    TRUE
326s > my.unitizer4@tests.result
326s      value conditions output message aborted
326s [1,] FALSE       TRUE   TRUE    TRUE    TRUE
326s [2,]  TRUE       TRUE   TRUE   FALSE    TRUE
326s [3,]  TRUE       TRUE  FALSE    TRUE    TRUE
326s [4,]  TRUE       TRUE   TRUE   FALSE    TRUE
326s > 
326s > 
326s PASS
326s Begin testing t-shim.R
326s 
326s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
326s Copyright (C) 2024 The R Foundation for Statistical Computing
326s Platform: arm-unknown-linux-gnueabihf (32-bit)
326s 
326s R is free software and comes with ABSOLUTELY NO WARRANTY.
326s You are welcome to redistribute it under certain conditions.
326s Type 'license()' or 'licence()' for distribution details.
326s 
326s R is a collaborative project with many contributors.
326s Type 'contributors()' for more information and
326s 'citation()' on how to cite R or R packages in publications.
326s 
326s Type 'demo()' for some demos, 'help()' for on-line help, or
326s 'help.start()' for an HTML browser interface to help.
326s Type 'q()' to quit R.
326s 
326s > source(file.path("aammrtf", "mock.R"))
326s > source(file.path("_helper", "init.R"))
327s > source(file.path("_helper", "pkgs.R"))
327s Install Packages
330s Setup Demos
330s > 
330s > old.state <- tracingState(TRUE)
330s > 
330s > # - "trace_at_end" -------------------------------------------------------------
330s > 
330s > if (is(unitizer:::trace_test_fun, "functionWithTrace"))
330s +   untrace("trace_test_fun", where = asNamespace("unitizer"))
330s > unitizer:::trace_at_end("trace_test_fun", quote(if (!inherits(.res,
330s +     "try-error")) cat(sprintf("x: %d\n", .res$value))), print = FALSE,
330s +     where = asNamespace("unitizer"))
330s Tracing function "trace_test_fun" in package "namespace:unitizer"
330s > coi(unitizer:::trace_test_fun())
330s > tracingState(FALSE)
330s [1] TRUE
330s > identical(capture.output(unitizer:::trace_test_fun()), character())
330s [1] TRUE
330s > tracingState(TRUE)
330s [1] FALSE
330s > 
330s > err <- try(unitizer:::trace_test_fun(stop("hello")), silent = TRUE)
330s > cond <- attr(err, "condition")
330s > conditionMessage(cond)
330s [1] "hello"
330s > conditionCall(cond)
330s unitizer:::trace_test_fun(stop("hello"))
330s > # return/missing etc. corner cases
330s > f <- function(x, y, z = 5) {
330s +     if (missing(x)) {
330s +         return(TRUE)
330s +     }
330s +     else if (z > 5) {
330s +         stop("OMG, z > 5")
330s +     }
330s +     else if (identical(substitute(y), "hey")) {
330s +         "substitute!"
330s +     }
330s +     else FALSE
330s + }
330s > unitizer:::trace_at_end("f", quote(cat("hello\n")), FALSE, environment())
330s > res <- f()
330s hello
330s > res
330s [1] TRUE
330s > res2 <- f(1)
330s hello
330s > res2  # FALSE
330s [1] FALSE
330s > err <- try(f(1, z = 6), silent = TRUE)
330s hello
330s > is(err, "try-error")
330s [1] TRUE
330s > attr(err, "condition")
330s <simpleError in f(1, z = 6): OMG, z > 5>
330s > res3 <- f(1, y = "hey")
330s hello
330s > res3
330s [1] "substitute!"
330s > 
330s > # - "Parent Env Stays on Top" --------------------------------------------------
330s > 
330s > try(detach("package:unitizerdummypkg1", unload = TRUE), silent = TRUE)
330s > while ("unitizer.dummy.list" %in% search()) try(detach("unitizer.dummy.list"))
330s > unitizer.dummy.list <- list(z = 23, x = 1, y = "hello")
330s > my.env <- new.env()
330s > state.set <- c(search.path = 2L)
330s > # make sure to unset this at end
330s > untz.glob <- unitizer:::unitizerGlobal$new(par.env = my.env,
330s +     enable.which = state.set, set.global = TRUE)
330s > untz.glob$shimFuns()
330s [1] TRUE
330s > sp <- search()
330s > curr2 <- sp[[2L]]
330s > 
330s > 
330s > identical(environmentName(parent.env(my.env)), curr2)
330s [1] TRUE
330s > library("unitizerdummypkg1", lib.loc = TMP.LIB)
330s > identical(environmentName(parent.env(my.env)), "package:unitizerdummypkg1")
330s [1] TRUE
330s > attach(unitizer.dummy.list)
331s > identical(environmentName(parent.env(my.env)), "unitizer.dummy.list")
331s [1] TRUE
331s > detach("unitizer.dummy.list")
331s > identical(environmentName(parent.env(my.env)), "package:unitizerdummypkg1")
331s [1] TRUE
331s > detach("package:unitizerdummypkg1", unload = TRUE)
331s > identical(environmentName(parent.env(my.env)), curr2)
331s [1] TRUE
331s > untz.glob$checkShims()
331s [1] TRUE
331s > 
331s > # - "Parent env tracking with search path manip" -------------------------------
331s > 
331s > untz.glob$state()
331s An object of class "unitizerGlobalIndices"
331s Slot "search.path":
331s [1] 1
331s 
331s Slot "options":
331s [1] 0
331s 
331s Slot "working.directory":
331s [1] 0
331s 
331s Slot "random.seed":
331s [1] 0
331s 
331s Slot "namespaces":
331s [1] 0
331s 
331s > keep.more <- c(getOption("unitizer.search.path.keep.base"))
331s > unitizer:::search_path_trim(keep.more, global = untz.glob)
331s > untz.glob$state()
331s An object of class "unitizerGlobalIndices"
331s Slot "search.path":
331s [1] 1
331s 
331s Slot "options":
331s [1] 0
331s 
331s Slot "working.directory":
331s [1] 0
331s 
331s Slot "random.seed":
331s [1] 0
331s 
331s Slot "namespaces":
331s [1] 0
331s 
331s > identical(environmentName(parent.env(my.env)), search()[[2L]])
331s [1] TRUE
331s > untz.glob$resetFull()
331s An object of class "unitizerGlobalIndices"
331s Slot "search.path":
331s [1] 1
331s 
331s Slot "options":
331s [1] 1
331s 
331s Slot "working.directory":
331s [1] 1
331s 
331s Slot "random.seed":
331s [1] 1
331s 
331s Slot "namespaces":
331s [1] 1
331s 
331s > identical(environmentName(parent.env(my.env)), curr2)
331s [1] TRUE
331s > 
331s > # - "Disable Unshims, etc." ----------------------------------------------------
331s > 
331s > untz.glob$unshimFuns()
331s [1] TRUE
331s > !any(vapply(list(library, detach, attach), inherits, logical(1L),
331s +     "functionWithTrace"))
331s [1] TRUE
331s > untz.glob$release()
331s > 
331s > # - "Checks, errors, etc." -----------------------------------------------------
331s > 
331s > # make sure to unset this at end
331s > untz.glob <- unitizer:::unitizerGlobal$new(par.env = my.env,
331s +     enable.which = state.set, set.global = TRUE)
331s > tracingState(FALSE)
331s [1] TRUE
331s > untz.glob$shimFuns() # warning
331s Warning in untz.glob$shimFuns() :
331s   Unable to shim required functions to run with `par.env=NULL` because tracing state is FALSE. Setting `par.env=.GlobalEnv`.
331s [1] FALSE
331s > parent.env(my.env)
331s <environment: R_GlobalEnv>
331s > tracingState(TRUE)
331s [1] FALSE
331s > untz.glob$release()
331s > untz.glob <- unitizer:::unitizerGlobal$new(par.env = my.env,
331s +     set.global = TRUE)
331s > trace("library", quote(cat("I am traced\n")), where = .BaseNamespaceEnv)
331s Tracing function "library" in package "namespace:base"
331s [1] "library"
331s > lib.trace <- library
331s > untz.glob$shimFuns()  # warning
331s Warning in untz.glob$shimFuns() :
331s   Unable to shim required functions to run with `par.env=NULL` because they are already traced. Setting `par.env=.GlobalEnv`.
331s [1] FALSE
331s > parent.env(my.env)
331s <environment: R_GlobalEnv>
331s > inherits(attach, "functionWithTrace")  # FALSE
331s [1] FALSE
331s > inherits(detach, "functionWithTrace")  # FALSE
331s [1] FALSE
331s > inherits(library, "functionWithTrace")
331s [1] TRUE
331s > identical(lib.trace, library)
331s [1] TRUE
331s > untrace("library", where = .BaseNamespaceEnv)
331s Untracing function "library" in package "namespace:base"
331s > untz.glob$release()
331s > untz.glob <- unitizer:::unitizerGlobal$new(par.env = my.env,
331s +     set.global = TRUE)
331s > untz.glob$shimFuns()
331s [1] TRUE
331s > trace("attach", quote(cat("I am traced\n")), where = .BaseNamespaceEnv)
331s Tracing function "attach" in package "namespace:base"
331s [1] "attach"
331s > attach.trace <- attach
331s > untz.glob$checkShims()   # warning
331s Warning in untz.glob$checkShims() :
331s   Traced functions unexpectedly changed, disabling clean parent env
331s Warning in unshimFuns() :
331s   `attach` was not untraced because they were modified by something other than unitizer.
331s `FALSE`, `TRUE`, and `FALSE` were not untraced for unknown reasons; please report to maintainer.
331s 
331s you should consider manually untracing the function, or restarting your R session to restore function to original value.
331s [1] FALSE
331s > parent.env(my.env)
331s <environment: R_GlobalEnv>
331s > inherits(detach, "functionWithTrace")    # FALSE
331s [1] FALSE
331s > inherits(library, "functionWithTrace")   # FALSE
331s [1] FALSE
331s > inherits(attach, "functionWithTrace")
331s [1] TRUE
331s > identical(attach.trace, attach)
331s [1] TRUE
331s > untrace("attach", where = .BaseNamespaceEnv)
331s Untracing function "attach" in package "namespace:base"
331s > untz.glob$release()
331s > untz.glob <- unitizer:::unitizerGlobal$new(par.env = my.env,
331s +     set.global = TRUE)
331s > untz.glob$shimFuns()
331s [1] TRUE
331s > tracingState(FALSE)
331s [1] TRUE
331s > untz.glob$checkShims()   # warning
331s Warning in untz.glob$checkShims() :
331s   Tracing state off, so disabling clean parent env
331s [1] FALSE
331s > parent.env(my.env)
331s <environment: R_GlobalEnv>
331s > tracingState(TRUE)
331s [1] FALSE
331s > inherits(detach, "functionWithTrace")    # FALSE
331s [1] FALSE
331s > inherits(library, "functionWithTrace")   # FALSE
331s [1] FALSE
331s > inherits(attach, "functionWithTrace")    # FALSE
331s [1] FALSE
331s > # try tracing some stuff that shouldn't be
331s > untz.glob$shimFuns("baljevzxhjLsdc")     # Warning
331s Warning in untz.glob$shimFuns("baljevzxhjLsdc") :
331s   Unable to shim required functions to run with `par.env=NULL` because some cannot be found. Setting `par.env=.GlobalEnv`.
331s [1] FALSE
331s > # test unexpected message or behavior from `trace_at_end`
331s > try(untz.glob$shimFun("sum"))
331s Error in untz.glob$shimFun("sum") : Internal Error: missing shim data
331s > 
331s > mock(unitizer:::trace_at_end, quote(stop("trace_at_end fail")))
331s > any(
331s +   grepl(
331s +     "trace_at_end fail",
331s +     capture.output(
331s +       trace.fail <- untz.glob$shimFun("library"), type = "message"
331s +     ),
331s +     fixed = TRUE
331s +   )
331s + )
331s [1] TRUE
331s > unmock(unitizer:::trace_at_end)
331s > 
331s > trace.fail   # FALSE
331s [1] FALSE
331s > mock(unitizer:::trace_at_end, quote(message("random message")))
331s > untz.glob$shimFun("library")
331s random message
331s Warning in untz.glob$shimFun("library") :
331s   Function `library` was not traced even though tracing attempt did not produce errors.
331s [1] FALSE
331s > unmock(unitizer:::trace_at_end)
331s > 
331s > mock(unitizer:::trace_at_end, quote(TRUE))
331s > dont.trace <- untz.glob$shimFun("library") # Warning "not traced"
331s Warning in untz.glob$shimFun("library") :
331s   Function `library` was not traced even though tracing attempt did not produce errors.
331s > unmock(unitizer:::trace_at_end)
331s > 
331s > dont.trace        # FALSE
331s [1] FALSE
331s > untz.glob$release()
331s > # untrace condition
331s > untz.glob <- unitizer:::unitizerGlobal$new(par.env = my.env, set.global = TRUE)
331s > untz.glob$shimFuns()
331s [1] TRUE
331s > 
331s > mock(
331s +   unitizer:::untrace_utz,
331s +   quote({
331s +     message("untrace dummy")
331s +     base::untrace(what = what, signature = signature, where = where)
331s +   })
331s + )
331s > untz.glob$unshimFuns()  # message untrace dummy
331s untrace dummy
331s untrace dummy
331s untrace dummy
331s [1] TRUE
331s > unmock(unitizer:::untrace_utz)
331s > untz.glob$release()
331s > 
331s > try(detach("package:unitizerdummypkg1", unload = TRUE), silent = TRUE)
331s > 
331s > while ("unitizer.dummy.list" %in% search()) try(detach("unitizer.dummy.list"))
331s > 
331s > # - "find_returns" -------------------------------------------------------------
331s > 
331s > fun <- function() {
331s +     if (TRUE)
331s +         return(1)
331s +     else {
331s +         {
331s +             2 + 2
331s +             identity(c(1, 2, return(3), {
331s +                 list(1, 2, 5)
331s +                 return(return(4))
331s +             }))
331s +             return(5)
331s +         }
331s +         return(6)
331s +     }
331s +     if (TRUE)
331s +         return(7)
331s +     else return(8)
331s +     return(9)
331s +     return(10)
331s + }
331s > ret.loc <- unitizer:::find_returns(fun)
331s > ret.loc
331s [[1]]
331s [1] 2 3
331s 
331s [[2]]
331s [1] 2 4 2 3 2 4
331s 
331s [[3]]
331s [1] 2 4 2 3 2 5 3
331s 
331s [[4]]
331s [1] 2 4 2 4
331s 
331s [[5]]
331s [1] 2 4 3
331s 
331s [[6]]
331s [1] 3 3
331s 
331s [[7]]
331s [1] 3 4
331s 
331s [[8]]
331s [1] 4
331s 
331s [[9]]
331s [1] 5
331s 
331s > 
331s > # Validate visually that this worked
331s > 
331s > all(vapply(unitizer:::get_returns(fun, ret.loc), function(x) x[[1L]] ==
331s +     quote(return), logical(1L)))
331s [1] TRUE
331s > 
331s > 
331s PASS
331s Begin testing t-state.R
331s 
331s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
331s Copyright (C) 2024 The R Foundation for Statistical Computing
331s Platform: arm-unknown-linux-gnueabihf (32-bit)
331s 
331s R is free software and comes with ABSOLUTELY NO WARRANTY.
331s You are welcome to redistribute it under certain conditions.
331s Type 'license()' or 'licence()' for distribution details.
331s 
331s R is a collaborative project with many contributors.
331s Type 'contributors()' for more information and
331s 'citation()' on how to cite R or R packages in publications.
331s 
331s Type 'demo()' for some demos, 'help()' for on-line help, or
331s 'help.start()' for an HTML browser interface to help.
331s Type 'q()' to quit R.
331s 
331s > source(file.path("_helper", "init.R"))
332s > 
332s > options(unitizer.color = FALSE, width = 80L)
332s > 
332s > # - "Random Seed" --------------------------------------------------------------
332s > 
332s > old.seed <- if (!exists(".Random.seed")) NULL else .Random.seed
332s > seed.dat <- getOption("unitizer.seed")
332s > 
332s > suppressWarnings(
332s +   untz.glob <-
332s +     unitizer:::unitizerGlobal$new(enable.which = setNames(2L, "random.seed"))
332s + )
332s > do.call(set.seed, seed.dat)
332s > new.seed <- .Random.seed
332s > state <- untz.glob$state()
332s > invisible(runif(10))    # see if we can reset state after this
332s > untz.glob$reset(state)
332s An object of class "unitizerGlobalIndices"
332s Slot "search.path":
332s [1] 0
332s 
332s Slot "options":
332s [1] 0
332s 
332s Slot "working.directory":
332s [1] 0
332s 
332s Slot "random.seed":
332s [1] 2
332s 
332s Slot "namespaces":
332s [1] 0
332s 
332s > identical(.Random.seed, new.seed)
332s [1] TRUE
332s > untz.glob$resetFull()
332s An object of class "unitizerGlobalIndices"
332s Slot "search.path":
332s [1] 1
332s 
332s Slot "options":
332s [1] 1
332s 
332s Slot "working.directory":
332s [1] 1
332s 
332s Slot "random.seed":
332s [1] 1
332s 
332s Slot "namespaces":
332s [1] 1
332s 
332s > 
332s > if (is.null(old.seed)) {
332s +   !isTRUE(exists(".Random.seed"))
332s + } else identical(old.seed, .Random.seed)
332s [1] TRUE
332s > 
332s > # - "State Show" ---------------------------------------------------------------
332s > 
332s > show(unitizer:::unitizerStatePristine())
332s            Settings Values
332s 1           par.env <auto>
332s 2       search.path      2
332s 3           options      2
332s 4 working.directory      2
332s 5       random.seed      2
332s 6        namespaces      2
332s -----
332s 0: off
332s 1: track starting with initial state
332s 2: track starting with clean state
332s <auto>: use special unitizer environment as 'par.env'
332s See `?unitizerState` for more details.
332s > 
332s > # - "all.equal.unitizerDummy" --------------------------------------------------
332s > 
332s > dummy <- new("unitizerDummy")
332s > blah <- "hello"
332s > ref.txt <- "`.REF` value was not recorded, but `.NEW` value was; they are likely different"
332s > identical(all.equal(dummy, blah), ref.txt)
332s [1] TRUE
332s > all.equal(dummy, dummy)
332s [1] TRUE
332s > identical(
332s +   all.equal(blah, dummy),
332s +   "`.NEW` value was not recorded, but `.REF` value was; they are likely different"
332s + )
332s [1] TRUE
332s > # testing S4 / S3 methods, first works, second doesn't since we can't
332s > # have an S3 generic with dispatch on 2nd arg
332s > 
332s > identical(
332s +   evalq(all.equal(new("unitizerDummy"), "hello"), getNamespace("stats")),
332s +   ref.txt
332s + )
332s [1] TRUE
332s > evalq(all.equal("hello", new("unitizerDummy")), getNamespace("stats"))
332s [1] "Modes: character, S4"                           
332s [2] "Attributes: < target is NULL, current is list >"
332s [3] "target is character, current is unitizerDummy"  
332s > 
332s > # - "All Equal States" ---------------------------------------------------------
332s > 
332s > # Doesn't seem like we're comparing these to anything?  Maybe should look into
332s > # doing so?
332s > 
332s > state.A <- new("unitizerGlobalState", search.path = letters[1:3],
332s +     options = list(a = 5:7, b = new("unitizerDummy"), c = "hello"),
332s +     working.directory = "a/b/c")
332s > state.B <- new("unitizerGlobalState", search.path = letters[1:3],
332s +     options = list(a = 5:7, b = new("unitizerDummy"), d = "goodbye",
332s +         c = new("unitizerDummy")), working.directory = new("unitizerDummy"),
332s +     random.seed = 1:3)
332s > state.C <- new("unitizerGlobalState", search.path = letters,
332s +     options = list(a = list(5, 6, 7), c = LETTERS), working.directory = new("unitizerDummy"),
332s +     random.seed = 1:3)
332s > # just compare to A
332s > state.D <- new("unitizerGlobalState", search.path = letters[1:3],
332s +     options = list(a = list(1, 2, 3), b = new("unitizerDummy"),
332s +         c = "hello"), working.directory = "a/b/c")
332s > state.E <- new("unitizerGlobalState", options = setNames(as.list(1:20),
332s +     head(letters, 20)))
332s > state.F <- new("unitizerGlobalState", options = setNames(as.list(1:20),
332s +     tail(letters, 20)))
332s > # This one is supposed to return something non-character or TRUE when used
332s > # with the provided all.equal
332s > state.G <- new("unitizerGlobalState", options = list(a = structure(TRUE,
332s +     class = "unitizer_glob_state_test"), b = 0))
332s > state.H <- new("unitizerGlobalState", options = list(a = structure(FALSE,
332s +     class = "unitizer_glob_state_test"), b = 2))
332s > 
332s > # - "as.state" -----------------------------------------------------------------
332s > 
332s > identical(
332s +   unitizer:::as.state("recommended"),
332s +   unitizer:::as.state(unitizer:::unitizerStateSuggested())
332s + )
332s [1] TRUE
332s > identical(
332s +   unitizer:::as.state("suggested"),
332s +   unitizer:::as.state(unitizer:::unitizerStateSuggested())
332s + )
332s [1] TRUE
332s > identical(
332s +   unitizer:::as.state("pristine"),
332s +   unitizer:::as.state(unitizer:::unitizerStatePristine())
332s + )
332s [1] TRUE
332s > 
332s > # unitizerStateProcessed should produce the default object (which currently
332s > # is "off")
332s > 
332s > all.equal(
332s +   unitizer:::as.state(.GlobalEnv),
332s +   unitizer:::as.state(unitizer:::unitizerStateSuggested(par.env = .GlobalEnv))
332s + )
332s [1] TRUE
332s > all.equal(
332s +   unitizer:::as.state(in_pkg("stats")),
332s +   unitizer:::as.state(
332s +     unitizer:::unitizerStateSuggested(par.env = getNamespace("stats"))
332s + ) )
332s [1] TRUE
332s > 
332s > stats.lib <- file.path(system.file(package = "stats"), "R")
332s > all.equal(
332s +   unitizer:::as.state(in_pkg(), test.files = stats.lib),
332s +   unitizer:::as.state(
332s +     unitizer:::unitizerStateSuggested(par.env = getNamespace("stats"))
332s + ) )
332s [1] TRUE
332s > try(unitizer:::as.state(200))
332s Error in as.state_raw(x) : 
332s   Argument `x` must be character(1L) %in% c("pristine", "recommended", "suggested"
332s , "basic", "off", "safe"), NULL, an environment, or must inherit from S4 classes
332s `unitizerStateRaw`, `unitizerStateProcessed` or `unitizerInPkg` in order to be 
332s interpreted as a unitizer state object.
332s > state <- unitizer:::unitizerStateOff()
332s > # bypass validity method
332s > state@options <- 2L
332s > try(validObject(state))
332s Error in validObject(state) : 
332s   invalid class "unitizerStateOff" object: Argument `state` is an invalid state: 'options' is set to 2, but 'search.path' and 'namespaces' are not
332s > # state raw conversions
332s > identical(
332s +   unitizer:::as.state(unitizer:::unitizerStateRaw()),
332s +   unitizer:::unitizerStateProcessed()
332s + )
332s [1] TRUE
332s > identical(
332s +   unitizer:::as.state(unitizer:::unitizerStateRaw(par.env = "stats")),
332s +   unitizer:::unitizerStateProcessed(par.env = getNamespace("stats"))
332s + )
332s [1] TRUE
332s > state@options <- 0L
332s > state.proc <- unitizer:::as.unitizerStateProcessed(state)
332s > state.raw <- unitizer:::as.unitizerStateRaw(state.proc)
332s > is(state.raw, "unitizerStateRaw")
332s [1] TRUE
332s > all.equal(
332s +   lapply(slotNames(state), slot, object = state.proc),
332s +   lapply(slotNames(state.raw), slot, object = state.raw)
332s + )
332s [1] TRUE
332s > try(unitizer:::as.state(unitizer:::unitizerStateRaw(par.env = in_pkg())))
332s Error in in_pkg_to_env(x.raw@par.env, test.files) : 
332s   Unable to detect package to use namespace of as parent environment; see `?
332s unitizerState` for how to specify a package namespace explicitly as a parent 
332s environment.
332s Error in unitizer:::as.state(unitizer:::unitizerStateRaw(par.env = in_pkg())) : 
332s   Unable to convert `par.env` value to a namespace environment
332s > 
332s > identical(
332s +   unitizer:::as.state(unitizer:::unitizerStateRaw(par.env = in_pkg("stats"))),
332s +   unitizer:::unitizerStateProcessed(par.env = getNamespace("stats"))
332s + )
332s [1] TRUE
332s > try(
332s +   unitizer:::as.state(
332s +     unitizer:::unitizerStateRaw(par.env = in_pkg("asdfalkdfasd"))
332s + ) )
332s Error in loadNamespace(name) : there is no package called 'asdfalkdfasd'
332s Error in in_pkg_to_env(x.raw@par.env, test.files) : 
332s   Unable to load "asdfalkdfasd" namespace to use as parent environment; see 
332s `?unitizerState` for instructions on how to specify a package namespace as a 
332s parent environment for tests.
332s Error in unitizer:::as.state(unitizer:::unitizerStateRaw(par.env = in_pkg("asdfalkdfasd"))) : 
332s   Unable to convert `par.env` value to a namespace environment
332s > try(
332s +   unitizer:::as.state(
332s +     unitizer:::unitizerStateRaw(par.env = in_pkg("")), test.files = getwd()
332s + ) )
332s Error in in_pkg("") : Argument `package` may not be an empty string
332s > # impossible states
332s > state.obj <- unitizer:::unitizerStateRaw()
332s > state.obj@options <- 2L
332s > try(unitizer:::as.state(state.obj))
332s Error in unitizer:::as.state(state.obj) : 
332s   Options state tracking (2) must be less than namespace state tracking (0).
332s > state.obj@namespaces <- 2L
332s > state.obj@search.path <- 1L
332s > try(unitizer:::as.state(state.obj))
332s Error in unitizer:::as.state(state.obj) : 
332s   Namespace state tracking (2) must be less than or equal to search path state 
332s tracking (1).
332s > 
332s > # - "as.state_raw" -------------------------------------------------------------
332s > 
332s > old.opt.loc <- options(unitizer.state = .GlobalEnv)
332s > try(unitizer:::as.state_raw(.GlobalEnv))
332s Error in unitizer:::as.state_raw(.GlobalEnv) : 
332s   Value for `getOption('unitizer.state')` is incompatible with using an environment or an 'unitizerInPkg' object as the value for the `state` argument because it also is an environment or a 'unitizerInPkg' object; you must change the option or the `state` argument to be compatible.
332s > options(unitizer.state = 42L)
332s > try(unitizer:::as.state_raw(.GlobalEnv))
332s Error in unitizer:::as.state_raw(.GlobalEnv) : 
332s   `getOption('unitizer.state')` must be character(1L) %in% c("pristine", "recom-
332s mended", "suggested", "basic", "off", "safe"), NULL, an environment, or must 
332s inherit from S4 classes `unitizerStateRaw`, `unitizerStateProcessed` or `
332s unitizerInPkg` in order to be interpreted as a unitizer state object.
332s > state.raw <- unitizer:::as.unitizerStateRaw(unitizer:::unitizerStateOff())
332s > state.proc <- unitizer:::as.unitizerStateProcessed(state.raw)
332s > my.env <- new.env()
332s > options(unitizer.state = state.raw)
332s > state.raw@par.env <- my.env
332s > all.equal(unitizer:::as.state_raw(my.env), state.raw)
332s [1] TRUE
332s > options(unitizer.state = state.proc)
332s > my.env <- new.env()
332s > state.proc@par.env <- my.env
332s > all.equal(
332s +   unitizer:::as.state_raw(my.env),
332s +   unitizer:::as.unitizerStateRaw(state.proc)
332s + )
332s [1] TRUE
332s > options(old.opt.loc)
332s > 
332s > # - "state" --------------------------------------------------------------------
332s > 
332s > # all these assume we set the options to be in recommended mode
332s > 
332s > all.equal(state("stats"), unitizer:::unitizerStateSuggested(par.env = "stats"))
332s [1] TRUE
332s > 
332s > all.equal(
332s +   state(in_pkg("stats")),
332s +   unitizer:::unitizerStateSuggested(par.env = in_pkg("stats"))
332s + )
332s [1] TRUE
332s > all.equal(
332s +   state(in_pkg()), unitizer:::unitizerStateSuggested(par.env = in_pkg())
332s + )
332s [1] TRUE
332s > all.equal(
332s +   state(search.path = 1), unitizer:::unitizerStateSuggested(search.path = 1L)
332s + )
332s [1] TRUE
332s > s1 <- unitizer:::unitizerStateSuggested(par.env = .GlobalEnv)
332s > for (i in setdiff(slotNames(s1), "par.env")) slot(s1, i) <- 0L
332s > s2 <- unitizer:::unitizerStateOff()
332s > all.equal(s1, s2)
332s [1] TRUE
332s > # invalid state
332s > try(state(search.path = 3))
332s Error in state(search.path = 3) : 
332s   Argument `search.path` must be integer(1L)  in 0:2
332s > try(state(options = 2, namespaces = 1))
332s Error in state(options = 2, namespaces = 1) : 
332s   Unable to create valid `unitizerStateRaw` object: Argument `state` is an invalid state: 'options' is set to 2, but 'search.path' and 'namespaces' are not
332s > try(state(namespaces = 2, search.path = 1))
332s Error in state(namespaces = 2, search.path = 1) : 
332s   Unable to create valid `unitizerStateRaw` object: Argument `state` is an invalid state: 'namespaces' is set to 2, but 'search.path' is not
332s > state.inv <- unitizer:::unitizerStateProcessed()
332s > state.inv@options <- 2L
332s > try(unitizer:::as.state(state.inv))
332s Error in unitizer:::as.state(state.inv) : 
332s   Options state tracking (2) must be less than namespace state tracking (0).
332s > state.inv@namespaces <- 2L
332s > try(unitizer:::as.state(state.inv))
332s Error in unitizer:::as.state(state.inv) : 
332s   Namespace state tracking (2) must be less than or equal to search path state 
332s tracking (0).
332s > # captured <in: >
332s > any(grepl("<in: .*>", capture.output(show(state(in_pkg())))))
332s [1] TRUE
332s > any(grepl("<in: package:stats>", capture.output(show(state(in_pkg("stats"))))))
332s [1] TRUE
332s > any(grepl("namespace:stats", capture.output(show(state(asNamespace("stats"))))))
332s [1] TRUE
332s > 
332s > # - "in_pkg" -------------------------------------------------------------------
332s > 
332s > try(in_pkg(""))
332s Error in in_pkg("") : Argument `package` may not be an empty string
332s > identical(as.character(in_pkg()), "<in: auto-detect-pkg>")
332s [1] TRUE
332s > identical(as.character(in_pkg("stats")), "<in: package:stats>")
332s [1] TRUE
332s > identical(capture.output(show(in_pkg())), "<in: auto-detect-pkg>")
332s [1] TRUE
332s > try(unitizer:::in_pkg_to_env(in_pkg(), "/"))
332s Error in unitizer:::in_pkg_to_env(in_pkg(), "/") : 
332s   Unable to detect package to use namespace of as parent environment; see `?
332s unitizerState` for how to specify a package namespace explicitly as a parent 
332s environment.
332s > 
332s > # - "merge states" -------------------------------------------------------------
332s > 
332s > trk.new <- new("unitizerGlobalTrackingStore", search.path = list(1,
332s +     2, 3), options = list("a", "b"))
332s > trk.ref <- new("unitizerGlobalTrackingStore", search.path = list(4,
332s +     5, 6), options = list("c", "d"))
332s > items <- new("unitizerItems")
332s > items <- items + new("unitizerItem", call = quote(1 + 1), glob.indices = new("unitizerGlobalIndices",
332s +     search.path = 1L, options = 2L))
332s > items <- items + new("unitizerItem", call = quote(2 + 1), glob.indices = new("unitizerGlobalIndices",
332s +     search.path = 2L, options = 1L))
332s > items <- items + new("unitizerItem", call = quote(1 * 1), reference = TRUE,
332s +     glob.indices = new("unitizerGlobalIndices", search.path = 1L,
332s +         options = 1L))
332s > items <- items + new("unitizerItem", call = quote(2 * 1), reference = TRUE,
332s +     glob.indices = new("unitizerGlobalIndices", search.path = 3L,
332s +         options = 2L))
332s > res <- unitizer:::mergeStates(items, trk.new, trk.ref)
332s > 
332s > sapply(res$items, function(x) as.integer(slot(x, "glob.indices")))
332s                   [,1] [,2] [,3] [,4]
332s search.path          1    2    4    5
332s options              2    1    3    4
332s working.directory    0    0    0    0
332s random.seed          0    0    0    0
332s namespaces           0    0    0    0
332s > s.n.to.check <- c("search.path", "options", "working.directory",
332s +     "random.seed", "namespaces")
332s > sapply(s.n.to.check, slot, object = res$states)
332s $search.path
332s $search.path[[1]]
332s [1] 1
332s 
332s $search.path[[2]]
332s [1] 2
332s 
332s $search.path[[3]]
332s [1] 3
332s 
332s $search.path[[4]]
332s [1] 4
332s 
332s $search.path[[5]]
332s [1] 6
332s 
332s 
332s $options
332s $options[[1]]
332s [1] "a"
332s 
332s $options[[2]]
332s [1] "b"
332s 
332s $options[[3]]
332s [1] "c"
332s 
332s $options[[4]]
332s [1] "d"
332s 
332s 
332s $working.directory
332s list()
332s 
332s $random.seed
332s list()
332s 
332s $namespaces
332s list()
332s 
332s > # No reference items
332s > items.no.ref <- items[1:2]
332s > identical(
332s +   unitizer:::mergeStates(items.no.ref, trk.new, trk.ref), 
332s +   list(items = items.no.ref, states = trk.new)
332s + )
332s [1] TRUE
332s > # No new items; note that we only remap the used states to the new state
332s > # which is why we need all the .mod objects
332s > 
332s > items.no.new <- items[3:4]
332s > items.no.new.mod <- items.no.new
332s > items.no.new.mod[[2L]]@glob.indices@search.path <- 2L
332s > trk.ref.mod <- trk.ref
332s > trk.ref.mod@search.path[[2L]] <- NULL
332s > 
332s > identical(
332s +   unitizer:::mergeStates(
332s +     items.no.new, new("unitizerGlobalTrackingStore"),trk.ref
332s +   ),
332s +   list(items = items.no.new.mod, states = trk.ref.mod)
332s + )
332s [1] TRUE
332s > 
332s > 
332s PASS
332s Begin testing t-text.R
332s 
332s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
332s Copyright (C) 2024 The R Foundation for Statistical Computing
332s Platform: arm-unknown-linux-gnueabihf (32-bit)
332s 
332s R is free software and comes with ABSOLUTELY NO WARRANTY.
332s You are welcome to redistribute it under certain conditions.
332s Type 'license()' or 'licence()' for distribution details.
332s 
332s R is a collaborative project with many contributors.
332s Type 'contributors()' for more information and
332s 'citation()' on how to cite R or R packages in publications.
332s 
332s Type 'demo()' for some demos, 'help()' for on-line help, or
332s 'help.start()' for an HTML browser interface to help.
332s Type 'q()' to quit R.
332s 
332s > source(file.path("_helper", "init.R"))
332s > 
332s > # - "cap_first" ----------------------------------------------------------------
332s > 
332s > set.seed(1, "Mersenne-Twister")
332s > words <- replicate(2, paste0(sample(letters, 5), collapse = ""))
333s > WORDS <- toupper(words)
333s > 
333s > unitizer:::cap_first(c("", letters[1:2], letters[25:26], words, WORDS))
333s [1] ""      "A"     "B"     "Y"     "Z"     "Gjnue" "Xzpob" "GJNUE" "XZPOB"
333s > 
333s > unitizer:::decap_first(c("", letters[1:2], letters[25:26], words, WORDS))
333s [1] ""      "a"     "b"     "y"     "z"     "gjnue" "xzpob" "gJNUE" "xZPOB"
333s > 
333s > # - "header" -------------------------------------------------------------------
333s > 
333s > try(unitizer:::header("hello world", letters))
333s Error in unitizer:::header("hello world", letters) : 
333s   Argument `level` must be 1 length integer-like and in 1:3
333s > try(unitizer:::header(letters, 1))
333s Error in unitizer:::header(letters, 1) : 
333s   Argument `x` must be a one length character vector
333s > 
333s > # - "word_wrap" ----------------------------------------------------------------
333s > 
333s > lorem1 <- "Today, with Kiernan on the stand offering confirmation, Howard walked the jury through the enormous amount of data pulled from Ulbricht's computer. Defense lawyers haven't had a chance yet to respond to this evidence—that will likely come tomorrow. The mountain they have to climb looks higher than ever, though. Last week, Ulbricht's lawyer outlined a defense in which Ulbricht walked away from the marketplace he created and was \"lured back.\" But what will explain the dozens of folders of data on this laptop, with data from the upper echelons of Silk Road management—mixed with the most intimate details of Ulbricht's personal life?"
333s > lorem2 <- "/Volumes/FIXED/folder1/folder2/folder.2345/folderabac/file.text.batch"
333s > lorem3 <- "\"untz.state.test\", \"add.smooth\", \"bitmapType\", \"browser\", \"browserNLdisabled\", \"CBoundsCheck\", \"check.bounds\", \"citation.bibtex.max\", \"continue\", \"contrasts\""
333s > range(nchar(head(unitizer:::word_wrap(lorem1, 25L), -1L)))
333s [1] 18 25
333s > t.rn <- range(nchar(head(unitizer:::word_wrap(lorem1, 25L, 3L), 
333s +     -1L)))
333s > # for some reason can't get test to produce same thing in windows when
333s > # running all tests vs. single one at the prompt; the > 20 is a cop-out that
333s > # should catch both the expected case (23) and what actually happens when
333s > # you run the tests on windows
333s > # expect_true(min(t.rn) > 20 && max(t.rn) <= 25)
333s > min(t.rn) > 20 && max(t.rn) <= 25
333s [1] TRUE
333s > 
333s > unitizer:::word_wrap(substr(lorem1, 1, 147), 45L, 3L)
333s [1] "Today, with Kiernan on the stand offering co-"
333s [2] "nfirmation, Howard walked the jury through "  
333s [3] "the enormous amount of data pulled from Ulb-" 
333s [4] "richt's computer."                            
333s > unitizer:::word_wrap(substr(lorem1, 1, 147), 45L, 3L, FALSE)
333s [1] "Today, with Kiernan on the stand offering con"
333s [2] "firmation, Howard walked the jury through the"
333s [3] "enormous amount of data pulled from Ulbricht'"
333s [4] "s computer."                                  
333s > unitizer:::word_wrap(lorem2, 15L, 3L)
333s [1] "/Volumes/FIXED/" "folder1/fol-"    "der2/folder.23-" "45/folderabac/" 
333s [5] "file.text.batch"
333s > unitizer:::word_wrap(lorem2, 15L, 8L)
333s [1] "/Volumes/FIXED/" "folder1/"        "folder2/folder." "2345/fol-"      
333s [5] "derabac/file."   "text.batch"     
333s > 
333s > unitizer:::word_wrap(lorem3, 76L, 8L)
333s [1] "\"untz.state.test\", \"add.smooth\", \"bitmapType\", \"browser\", \"browserNLdisab-"
333s [2] "led\", \"CBoundsCheck\", \"check.bounds\", \"citation.bibtex.max\", \"continue\", " 
333s [3] "\"contrasts\""                                                                      
333s > unitizer:::word_wrap("hello sunset \nthere moonrise", width = 12L)
333s [1] "hello sunset" "there "       "moonrise"    
333s > 
333s > x1 <- c("this is supposed to be a particularly long string\nthat allows us to test the behavior of bullets once we start seeing\nsome wrapping kicking in which was a problem once upon a time")
333s > 
333s > unitizer:::word_wrap(x1, unlist = FALSE, width = 80L)
333s [[1]]
333s [1] "this is supposed to be a particularly long string"                  
333s [2] "that allows us to test the behavior of bullets once we start seeing"
333s [3] "some wrapping kicking in which was a problem once upon a time"      
333s 
333s > com <- "# this is supposed to be a relatively long comment that will get re-flowed"
333s > old.opt <- options(crayon.enabled = FALSE)
333s > unitizer:::word_comment(com, width = 30L)
333s [1] "# this is supposed to be a "    "#relatively long comment that "
333s [3] "#will get re-flowed"           
333s > unitizer:::word_wrap(c("\nhello\nthere", "\nhow"))
333s [1] ""      "hello" "there" ""      "how"  
333s > # too narrow
333s > no.wrap <- "hello I won't be wrapped"
333s > unitizer:::word_wrap(no.wrap, width = 3)  # warning
333s Warning in unitizer:::word_wrap(no.wrap, width = 3) :
333s   Display width too narrow to properly wrap text; setting to 80L
333s [1] "hello I won't be wrapped"
333s > options(old.opt)
333s > 
333s > # - "bullets" ------------------------------------------------------------------
333s > 
333s > x <- c("there was once a time when the fantastic unicorns could fly", 
333s +     "bugs bunny ate carrots and drank milk while hunting ducks")
333s > xx <- unitizer:::UL(x)
333s > 
333s > as.character(xx, width = 30L)
333s [1] "- there was once a time when "  "  the fantastic unicorns could"
333s [3] "  fly"                          "- bugs bunny ate carrots and " 
333s [5] "  drank milk while hunting "    "  ducks"                       
333s > print(xx, width = 80L)
333s - there was once a time when the fantastic unicorns could fly
333s - bugs bunny ate carrots and drank milk while hunting ducks
333s > yy <- unitizer:::OL(x)
333s > as.character(yy, width = 30L)
333s [1] "1. there was once a time when " "   the fantastic unicorns "    
333s [3] "   could fly"                   "2. bugs bunny ate carrots and "
333s [5] "   drank milk while hunting "   "   ducks"                      
333s > # hopefully always C locale collation in tests?
333s > sort(as.character(unitizer:::OL(rep(letters, 2), style = "LETTERS")))
333s  [1] " A. a" " B. b" " C. c" " D. d" " E. e" " F. f" " G. g" " H. h" " I. i"
333s [10] " J. j" " K. k" " L. l" " M. m" " N. n" " O. o" " P. p" " Q. q" " R. r"
333s [19] " S. s" " T. t" " U. u" " V. v" " W. w" " X. x" " Y. y" " Z. z" "AA. a"
333s [28] "AB. b" "AC. c" "AD. d" "AE. e" "AF. f" "AG. g" "AH. h" "AI. i" "AJ. j"
333s [37] "AK. k" "AL. l" "AM. m" "AN. n" "AO. o" "AP. p" "AQ. q" "AR. r" "AS. s"
333s [46] "AT. t" "AU. u" "AV. v" "AW. w" "AX. x" "AY. y" "AZ. z"
333s > xl <- as.list(x)
333s > y <- unitizer:::UL(c(xl, list(unitizer:::OL(c(xl, list(unitizer:::UL(x))))), 
333s +     "yowza it is raining toads today!"))
333s > as.character(y, width = 30)
333s  [1] "- there was once a time when "  "  the fantastic unicorns could"
333s  [3] "  fly"                          "- bugs bunny ate carrots and " 
333s  [5] "  drank milk while hunting "    "  ducks"                       
333s  [7] "  1. there was once a time "    "     when the fantastic "      
333s  [9] "     unicorns could fly"        "  2. bugs bunny ate carrots "  
333s [11] "     and drank milk while "     "     hunting ducks"            
333s [13] "    - there was once a time "   "      when the fantastic "     
333s [15] "      unicorns could fly"       "    - bugs bunny ate carrots " 
333s [17] "      and drank milk while "    "      hunting ducks"           
333s [19] "- yowza it is raining toads "   "  today!"                      
333s > try(unitizer:::as.character.bullet(hello, 1:10))
333s Error in unitizer:::as.character.bullet(hello, 1:10) : 
333s   Argument `width` must be a one length positive numeric.
333s > # Extra args to word_wrap
333s > try(as.character(unitizer:::OL(c("hello", "there")), unlist = TRUE))
333s Error in as.character.bullet(unitizer:::OL(c("hello", "there")), unlist = TRUE) : 
333s   You may not specify `unlist` as part of `...` as that argument is used internally
333s > as.character(unitizer:::OL("asdfasdfqwerjhdfkasdfasdfasd"), width = 20L)
333s [1] "1. asdfasdfqwerjhdf-" "   kasdfasdfasd"     
333s > as.character(unitizer:::OL("asdfasdfqwerjhdfkasdfasdfasd"), width = 20L, 
333s +     hyphens = FALSE)
333s [1] "1. asdfasdfqwerjhdfk" "   asdfasdfasd"      
333s > 
333s > # - "substr_const" -------------------------------------------------------------
333s > 
333s > unitizer:::substr_cons(c("ab", "abcde", "abce"), 4L)
333s [1] "ab  " "abcd" "abc "
333s > unitizer:::substr_cons(c("ab", "abcde", "abce"), 4L, justify = "right")
333s [1] "  ab" "abcd" " abc"
333s > unitizer:::substr_cons(c("NEW", "PASS", "FAIL", "DELETED", "Error"), 4L)
333s [1] "NEW " "PASS" "FAIL" "DEL " "Err "
333s > 
333s > # - "str_reduce_unique" --------------------------------------------------------
333s > 
333s > str1 <- c("abcdef", "abcdefgh", "abcql")
333s > res1 <- c("def", "defgh", "ql")
333s > unitizer:::str_reduce_unique(str1)
333s [1] "def"   "defgh" "ql"   
333s > unitizer:::str_reduce_unique(str1, from = "right")
333s [1] "abcdef"   "abcdefgh" "abcql"   
333s > str2 <- vapply(strsplit(str1, ""), function(x) paste0(rev(x), 
333s +     collapse = ""), "")
333s > res2 <- vapply(strsplit(res1, ""), function(x) paste0(rev(x), 
333s +     collapse = ""), "")
333s > all.equal(unitizer:::str_reduce_unique(str2, from = "right"), res2)
333s [1] TRUE
333s > unitizer:::str_reduce_unique("aaa")
333s [1] ""
333s > identical(unitizer:::str_reduce_unique(rep("aaa", 5L)), rep("", 5L))
333s [1] TRUE
333s > 
333s > # - "strtrunc" -----------------------------------------------------------------
333s > 
333s > str1 <- c(paste0(letters, collapse = ""), paste0(LETTERS, collapse = ""))
333s > unitizer:::strtrunc(str1, 10L)
333s [1] "abcdefg..." "ABCDEFG..."
333s > unitizer:::strtrunc(str1, 10L, from = "left")
333s [1] "...tuvwxyz" "...TUVWXYZ"
333s > unitizer:::strtrunc(c("abc", "cab"), 3L)
333s [1] "abc" "cab"
333s > try(unitizer:::strtrunc(c("abc", "cab"), 2L))
333s Error in unitizer:::strtrunc(c("abc", "cab"), 2L) : 
333s   `nchar.max` too small, make bigger or make `ctd` shorter.
333s > 
333s > # - "oneline" ------------------------------------------------------------------
333s > 
333s > dep <- c("res <- data %>% group_by(ID) %>% summarise(date2 = nth(date, ", 
333s +     "    2), time2 = nth(time, 2), first_date = first(date), last_date = last(date), ", 
333s +     "    first_time = first(time), last_time = last(time))")
333s > unitizer:::one_line(dep)
333s [1] "res <- data %>% group_by(ID) %>% summarise(date2 = nth(date, 2), time2 = nth(time, 2), first_date = first(date), last_date = last(date), first_time = first(time), last_time = last(time))"
333s > unitizer:::one_line(dep, 50)
333s [1] "res <- data %>% group_by(ID) %>% summarise(date..."
333s > 
333s > # - "let_comb_fun" -------------------------------------------------------------
333s > 
333s > (unitizer:::make_let_combn_fun(letters))(12)
333s  [1] "a." "b." "c." "d." "e." "f." "g." "h." "i." "j." "k." "l."
333s > 
333s > # - "cc" -----------------------------------------------------------------------
333s > 
333s > unitizer:::cc("a", "b")
333s [1] "ab"
333s > unitizer:::cc(c("a", "b"), "c")
333s [1] "abc"
333s > unitizer:::cc(c("a", "b"), "c", c = " ")
333s [1] "a b c"
333s > 
333s > # - "screen_out" ---------------------------------------------------------------
333s > 
333s > string <- "once upon a time in a fairy land very far away lived a green dragon"
333s > unitizer:::screen_out(string, max.len = c(3L, 2L), width = 13L)
333s once upon a 
333s time in a 
333s ... truncated 4 lines
333s > 
333s > # - "text_wrap" ----------------------------------------------------------------
333s > 
333s > try(unitizer:::text_wrap(list(1, 2, 3), 5))
333s Error in unitizer:::text_wrap(list(1, 2, 3), 5) : 
333s   Arguments `x` and `width` must be character and integer like (all values >= 1) respectively
333s > try(unitizer:::text_wrap(letters, 1:3))
333s Error in unitizer:::text_wrap(letters, 1:3) : 
333s   Argument `x` must be a multiple in length of argument `width`
333s > 
333s > # - "capture_output" -----------------------------------------------------------
333s > 
333s > capt <- unitizer:::capture_output({
333s +     cat("hello")
333s +     cat("goodbye", file = stderr())
333s + })
333s > capt
333s - Output -----------------------------------------------------------------------
333s 
333s hello
333s - Message ----------------------------------------------------------------------
333s 
333s goodbye
333s > sum(grepl("Output|Message", capture.output(print(capt))))
333s [1] 2
333s > 
333s > # - "meta_word_cat" ------------------------------------------------------------
333s > 
333s > unitizer:::meta_word_cat("hello")
333s | hello
333s 
333s > capture.output(unitizer:::meta_word_cat("hello", trail.nl = FALSE))
333s [1] "| hello"
333s > # Newline issues
333s > unitizer:::meta_word_cat("hello\n", sep = "")
333s | hello
333s 
333s > unitizer:::meta_word_cat("hello", "there")
333s | hello
333s | there
333s 
333s > unitizer:::meta_word_cat("hello", "there", sep = " ")
333s | hello there
333s 
333s > 
333s > # - "meta_word_msg" ------------------------------------------------------------
333s > 
333s > unitizer:::meta_word_msg("hello")
333s | hello
333s 
333s > txt <- "hello there how are you this wraps"
333s > unitizer:::meta_word_msg(txt, width = 20)
333s | hello there how 
333s | are you this wraps
333s 
333s > # legacy fun
333s > unitizer:::word_msg("hello")
333s hello
333s > 
333s > # - "desc" ---------------------------------------------------------------------
333s > 
333s > obj1 <- list(a = iris, b = lm(dist ~ speed, cars), 1:10, matrix(letters, 
333s +     2))
333s > desc(obj1, 80)
333s [1] "list(a=data.frame[150,5], b=lm[12], int[10], chr mat[2,13])"
333s > desc(obj1, 40)
333s [1] "list[4]"
333s > desc(iris, 80)
333s [1] "data.frame[150,5]"
333s > desc(iris, 200)
333s [1] "data.frame(Sepal.Length=num[150], Sepal.Width=num[150], Petal.Length=num[150], Petal.Width=num[150], Species=fct[150])"
333s > desc(list(NULL, 1L))
333s [1] "list(NULL, int[1])"
333s > desc(NULL)
333s [1] "NULL"
333s > unitizer:::desc(NULL)
333s [1] "NULL"
333s > unitizer:::desc(lm(y ~ x, data.frame(y = 1:10, x = runif(10))))
333s [1] "lm[12]"
333s > unitizer:::desc(new("unitizerItem", call = quote(1 + 1), env = new.env()))
333s [1] "unitizerItem"
333s > unitizer:::desc(array(1:27, dim = rep(3, 3)))
333s [1] "array[3,3,3]"
333s > unitizer:::desc(data.frame(a = letters[1:10], b = 1:10, stringsAsFactors = TRUE))
333s [1] "data.frame(a=fct[10], b=int[10])"
333s > 
333s > # - "char_to_eng" --------------------------------------------------------------
333s > 
333s > unitizer:::char_to_eng(character(), "", "")
333s [1] ""
333s > unitizer:::char_to_eng(letters[1:4], "", "")
333s [1] "a, b, c, and d"
333s > unitizer:::char_to_eng(letters[1:2], "", "")
333s [1] "a, and b"
333s > unitizer:::char_to_eng(letters[1], "", "")
333s [1] "a"
333s > unitizer:::char_to_eng(letters[1])
333s [1] "a was"
333s > unitizer:::char_to_eng(letters[1:2])
333s [1] "a, and b were"
333s > 
333s > 
333s PASS
333s Begin testing t-translate.R
333s 
333s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
333s Copyright (C) 2024 The R Foundation for Statistical Computing
333s Platform: arm-unknown-linux-gnueabihf (32-bit)
333s 
333s R is free software and comes with ABSOLUTELY NO WARRANTY.
333s You are welcome to redistribute it under certain conditions.
333s Type 'license()' or 'licence()' for distribution details.
333s 
333s R is a collaborative project with many contributors.
333s Type 'contributors()' for more information and
333s 'citation()' on how to cite R or R packages in publications.
333s 
333s Type 'demo()' for some demos, 'help()' for on-line help, or
333s 'help.start()' for an HTML browser interface to help.
333s Type 'q()' to quit R.
333s 
333s > source(file.path("_helper", "init.R"))
333s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("refobjs")
333s > 
333s > test.file.dir <- file.path("_helper", "ref-objs", "translate")
333s > test.file <- file.path(test.file.dir, "testthat", "test-translate2.R")
333s > test.file.min <- file.path(test.file.dir, "testthat2", "test-translate-min.R")
333s > target.dir.base <- file.path(TMP.DIR, basename(tempfile()))
333s > target.dir <- file.path(target.dir.base, "helper", "translate", "unitizer")
333s > 
333s > # - "Prompt to create dir" -----------------------------------------------------
333s > 
333s > try(
333s +   testthat_translate_file(
333s +     test.file, target.dir, prompt = "always", interactive.mode = FALSE
333s + ) )
333s Error in testthat_transcribe_file(file.name, target.dir, keep.testthat.call,  : 
333s   Unable to proceed without creating target directory
333s > # translations have to be outside of `testthat`; second translation should fail
333s > # except we allow manual input
333s > 
333s > # - "translate a file" ---------------------------------------------------------
333s > 
333s > unitizer:::capture_output({
333s +     unitizer:::read_line_set_vals(c("Y"))
333s +     res1 <- testthat_translate_file(test.file, target.dir, prompt = "always",
333s +         interactive.mode = TRUE)
333s +     res1.txt <- readLines(res1)
333s +     unitizer:::read_line_set_vals(c("Y"))
333s +     res2 <- testthat_translate_file(test.file, target.dir, prompt = "overwrite",
333s +         interactive.mode = TRUE)
333s +     res2.txt <- readLines(res2)
333s +     unitizer:::read_line_set_vals(NULL)
333s + })
335s > dummy <- new("unitizerDummy")
335s > 
335s > all.equal(res1.txt, rds("translate_res1"))
335s [1] TRUE
335s > all.equal(res1.txt, res2.txt)
335s [1] TRUE
335s > 
335s > # Can't do this twice in a row without prompting in non-interactive mode
335s > # note test above does work because we use interactive mode to accept prompt
335s > 
335s > any(
335s +   grepl(
335s +     "already exists",
335s +     capture.output(
335s +       try(
335s +         testthat_translate_file(
335s +           test.file, target.dir, prompt = "always", interactive.mode = FALSE
335s +       ) ),
335s +       type='message'
335s + ) ) )
335s [1] TRUE
335s > untz <- get_unitizer(file.path(target.dir, "translate2.unitizer"))
335s > all.equal(untz@items.ref.calls.deparse, rds("translate_res2"))
335s [1] TRUE
335s > 
335s > lapply(unitizer:::as.list(untz@items.ref), function(x) x@data@value[[1L]])
335s [[1]]
335s <object not recorded>
335s 
335s [[2]]
335s  [1]  1  2  3  4  5  6  7  8  9 10
335s 
335s [[3]]
335s NULL
335s 
335s [[4]]
335s NULL
335s 
335s [[5]]
335s NULL
335s 
335s [[6]]
335s NULL
335s 
335s [[7]]
335s [1] "yoyo"
335s 
335s [[8]]
335s NULL
335s 
335s > unlink(target.dir, recursive = TRUE)
335s > 
335s > target.dir.base <- file.path(TMP.DIR, basename(tempfile()))
335s > target.dir <- file.path(target.dir.base, "_helper", "translate", "unitizer")
335s > 
335s > test.dir <- file.path("_helper", "ref-objs", "translate", "testthat")
335s > 
335s > # - "translate a dir" ----------------------------------------------------------
335s > 
335s > unitizer:::capture_output(res2 <- testthat_translate_dir(test.dir, target.dir))
335s > all.equal(lapply(res2, readLines), rds("translate_res3"))
335s [1] TRUE
335s > untz <- get_unitizer(file.path(target.dir, "translate2.unitizer"))
335s > all.equal(untz@items.ref.calls.deparse, rds("translate_res4"))
335s [1] TRUE
335s > 
335s > # Note not the same as when we did just the single file because the helper
335s > # file is loaded so `fun0` and `fun1` are actually defined
335s > lapply(unitizer:::as.list(untz@items.ref), function(x) x@data@value[[1L]])
335s [[1]]
335s <object not recorded>
335s 
335s [[2]]
335s  [1]  1  2  3  4  5  6  7  8  9 10
335s 
335s [[3]]
335s [1] 42
335s 
335s [[4]]
335s [1] 24
335s 
335s [[5]]
335s [1] 24
335s 
335s [[6]]
335s NULL
335s 
335s [[7]]
335s [1] "yoyo"
335s 
335s [[8]]
335s NULL
335s 
335s > 
335s > # Can't do it again since there are files there
335s > any(
335s +   grepl(
335s +     "safety feature to ensure files are not accidentally overwritten",
335s +     capture.output(
335s +       try(testthat_translate_dir(test.dir, target.dir)), type='message'
335s + ) ) )
335s [1] TRUE
335s > 
335s > # - minimal --------------------------------------------------------------------
335s > 
335s > # to test parameters
335s > 
335s > writeLines(
335s +   readLines(
335s +     testthat_translate_file(
335s +       test.file.min, target.dir, prompt = "never", interactive.mode = TRUE,
335s +       unitize = FALSE
335s + ) ) )
335s # Minimal translation
335s # test_that("simple tests", {
335s #     expect_equal(fun0(a), 1:10)
335s # })
335s unitizer_sect("simple tests", {
335s     # expect_equal(fun0(a), 1:10)
335s     fun0(a)
335s })
335s > writeLines(
335s +   readLines(
335s +     testthat_translate_file(
335s +       test.file.min, target.dir, prompt = "never", interactive.mode = TRUE,
335s +       use.sects = FALSE, unitize = FALSE
335s + ) ) )
335s # Minimal translation
335s # test_that("simple tests", {
335s #     expect_equal(fun0(a), 1:10)
335s # })
335s # - "simple tests" -------------------------------------------------------------
335s 
335s 
335s # expect_equal(fun0(a), 1:10)
335s fun0(a)
335s > writeLines(
335s +   readLines(
335s +     testthat_translate_file(
335s +       test.file.min, target.dir, prompt = "never", interactive.mode = TRUE,
335s +       use.sects = FALSE, keep.testthat.call = FALSE, unitize = FALSE
335s + ) ) )
335s # Minimal translation
335s # - "simple tests" -------------------------------------------------------------
335s 
335s 
335s fun0(a)
335s > 
335s > 
335s > 
335s PASS
335s Begin testing t-upgrade.R
335s 
335s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
335s Copyright (C) 2024 The R Foundation for Statistical Computing
335s Platform: arm-unknown-linux-gnueabihf (32-bit)
335s 
335s R is free software and comes with ABSOLUTELY NO WARRANTY.
335s You are welcome to redistribute it under certain conditions.
335s Type 'license()' or 'licence()' for distribution details.
335s 
335s R is a collaborative project with many contributors.
335s Type 'contributors()' for more information and
335s 'citation()' on how to cite R or R packages in publications.
335s 
335s Type 'demo()' for some demos, 'help()' for on-line help, or
335s 'help.start()' for an HTML browser interface to help.
335s Type 'q()' to quit R.
335s 
335s > source(file.path("_helper", "init.R"))
336s > blat_vers <- function(x) sub("'\\d+(?:\\.\\d+)*'", "'<version>'", x)
336s > 
336s > # - "Upgrade works" ------------------------------------------------------------
336s > 
336s > # this is also now tested as part of load
336s > unitizer <-
336s +   get_unitizer(file.path("_helper", "unitizers", "trivial.unitizer.0.4.2"))
336s > try(validObject(unitizer, complete = TRUE))
336s Error in validObject(object[[x]], complete = TRUE) : 
336s   invalid class "unitizerItem" object: 1: slots in class definition but not in object: "call.dep", "section.id", "section.name", "glob.indices", "state"
336s invalid class "unitizerItem" object: 2: In slot "data" of class "unitizerItemData": invalid object for slot "value" in class "unitizerItemData": got class "logical", should be or extend class "list"
336s > as.character(unitizer@version)
336s [1] "0.4.2"
336s > unitizer.up <- unitizer:::upgrade_internal(unitizer) # warning
336s Warning in addSlot(object, "cons", NULL) :
336s   Slot `cons` does not exist in current version of `unitizer` so not added to object.
336s Warning in addSlot(object, "jump.to.test", 0L) :
336s   Slot `jump.to.test` does not exist in current version of `unitizer` so not added to object.
336s > validObject(unitizer.up)
336s [1] TRUE
336s > identical(unitizer.up@version, as.character(packageVersion("unitizer")))
336s [1] TRUE
336s > 
336s > # - Upgrade Warnings in Unitize ------------------------------------------------
336s > 
336s > tdir <- tempfile()
336s > dir.create(tdir)
336s > dir.create(file.path(tdir, "trivial.unitizer"))
336s > file.copy(file.path("_helper", "unitizers", "trivial.R"), tdir)
336s [1] TRUE
336s > file.copy(
336s +   file.path("_helper", "unitizers", "trivial.unitizer.0.4.2", "data.rds"),
336s +   file.path(tdir, "trivial.unitizer")
336s + )
336s [1] TRUE
336s > odir <- setwd(tdir)
336s > unitizer:::read_line_set_vals('N')
336s > out <- unitizer:::capture_output(
336s +   try(unitize(file.path(tdir, "trivial.R"), interactive.mode=TRUE))
336s + )
337s > out[] <- lapply(out, blat_vers)
337s > out
337s - Output -----------------------------------------------------------------------
337s 
337s 
337s | 
337s | The following unitizer will be upgraded to version '<version>':
337s | 
337s | - trivial.unitizer (at '<version>')
337s 
337s unitizer> N
337s 
337s - Message ----------------------------------------------------------------------
337s 
337s Warning in check_call_stack() :
337s   It appears you are running unitizer inside an error handling function such as 
337s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
337s couraged as it may cause unpredictable behavior from unitizer in the event tests
337s produce conditions / errors.  We strongly recommend you re-run your tests 
337s outside of such handling functions.
337s Warning in addSlot(object, "cons", NULL) :
337s   Slot `cons` does not exist in current version of `unitizer` so not added to object.
337s Warning in addSlot(object, "jump.to.test", 0L) :
337s   Slot `jump.to.test` does not exist in current version of `unitizer` so not added to object.
337s Warning in load_unitizers(store.ids[active], test.files[active], par.frame = util.frame,  :
337s   Upgraded test file does not match original test file ('NA' vs 'trivial.R').
337s | unitizer upgrades are IRREVERSIBLE and not backwards compatible. 
337s | Proceed?
337s 
337s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
337s   Cannot proceed without upgrading unitizers.
337s > 
337s > unitizer:::read_line_set_vals(c('Y','Q'))
337s > out <- unitizer:::capture_output(
337s +   unitize(file.path(tdir, "trivial.R"), interactive.mode=TRUE)
337s + )
337s > out[] <- lapply(out, blat_vers)
337s > out
337s - Output -----------------------------------------------------------------------
337s 
337s 
337s | 
337s | The following unitizer will be upgraded to version '<version>':
337s | 
337s | - trivial.unitizer (at '<version>')
337s 
337s unitizer> Y
337s 
337s +------------------------------------------------------------------------------+
337s | unitizer for: trivial.R                                                      |
337s +------------------------------------------------------------------------------+
337s 
337s              Pass Fail  New
337s  <untitled>     1    -    3
337s ...........................
337s                 1    -    3
337s 
337s - New --------------------------------------------------------------------------
337s 
337s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
337s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
337s 
337s > x <- 1 + 1
337s > x + 2
337s [1] 4
337s 
337s unitizer> Q
337s 
337s | unitizer unchanged.
337s 
337s - Message ----------------------------------------------------------------------
337s 
337s Warning in addSlot(object, "cons", NULL) :
337s   Slot `cons` does not exist in current version of `unitizer` so not added to object.
337s Warning in addSlot(object, "jump.to.test", 0L) :
337s   Slot `jump.to.test` does not exist in current version of `unitizer` so not added to object.
337s Warning in load_unitizers(store.ids[active], test.files[active], par.frame = util.frame,  :
337s   Upgraded test file does not match original test file ('NA' vs 'trivial.R').
337s | unitizer upgrades are IRREVERSIBLE and not backwards compatible. 
337s | Proceed?
337s 
337s | No changes recorded.
337s > unitizer:::read_line_set_vals(NULL)
337s > setwd(odir)
337s > unlink(tdir, recursive=TRUE)
337s > 
337s > # - Upgrade Multiple Unitizers Unitize -----------------------------------------
337s > 
337s > tdir <- tempfile()
337s > dir.create(tdir)
337s > dir.create(file.path(tdir, "trivial1.unitizer"))
337s > dir.create(file.path(tdir, "trivial2.unitizer"))
337s > file.copy(
337s +   file.path("_helper", "unitizers", "trivial.R"),
337s +   file.path(tdir, c("trivial1.R", "trivial2.R"))
337s + )
337s [1] TRUE TRUE
337s > file.copy(
337s +   file.path("_helper", "unitizers", "trivial.unitizer.0.4.2", "data.rds"),
337s +   file.path(tdir, "trivial1.unitizer")
337s + )
337s [1] TRUE
337s > file.copy(
337s +   file.path("_helper", "unitizers", "trivial.unitizer.0.4.2", "data.rds"),
337s +   file.path(tdir, "trivial2.unitizer")
337s + )
337s [1] TRUE
337s > odir <- setwd(tdir)
337s > unitizer:::read_line_set_vals(c('Y','Q'))
337s > out <- unitizer:::capture_output(
337s +   unitize_dir(tdir, interactive.mode=TRUE)
337s + )
337s > out[] <- lapply(out, blat_vers)
337s > out
337s - Output -----------------------------------------------------------------------
337s 
337s 
337s | 
337s | The following unitizers will be upgraded to version '<version>':
337s | 
337s | - trivial1.unitizer (at '<version>')
337s | - trivial2.unitizer (at '<version>')
337s 
337s unitizer> Y
337s 
337s | Summary of files in common directory '.':
337s | 
337s |                 Pass Fail  New
337s | *1. trivial1.R     1    -    3
337s | *2. trivial2.R     1    -    3
337s | ..............................
337s |                    2    -    6
337s | Legend:
337s | * `unitizer` requires review
337s 
337s | Type number of unitizer to review, 'A' to review all that require review
337s 
337s unitizer> Q
337s 
337s - Message ----------------------------------------------------------------------
337s 
337s Warning in addSlot(object, "cons", NULL) :
337s   Slot `cons` does not exist in current version of `unitizer` so not added to object.
337s Warning in addSlot(object, "jump.to.test", 0L) :
337s   Slot `jump.to.test` does not exist in current version of `unitizer` so not added to object.
337s Warning in addSlot(object, "cons", NULL) :
337s   Slot `cons` does not exist in current version of `unitizer` so not added to object.
337s Warning in addSlot(object, "jump.to.test", 0L) :
337s   Slot `jump.to.test` does not exist in current version of `unitizer` so not added to object.
337s Warning in load_unitizers(store.ids[active], test.files[active], par.frame = util.frame,  :
337s   Upgraded test file does not match original test file ('NA' vs 'trivial1.R').
337s Warning in load_unitizers(store.ids[active], test.files[active], par.frame = util.frame,  :
337s   Upgraded test file does not match original test file ('NA' vs 'trivial2.R').
337s | unitizer upgrades are IRREVERSIBLE and not backwards compatible. 
337s | Proceed?
337s 
337s > unitizer:::read_line_set_vals(NULL)
337s > setwd(odir)
337s > unlink(tdir, recursive=TRUE)
337s > 
337s > # - "Rename" -------------------------------------------------------------------
337s > 
337s > setClass("untzUpgrTest", slots = c(a = "character"))
337s > x <- new("untzUpgrTest", a = letters)
337s > validObject(x)
337s [1] TRUE
337s > setClass("untzUpgrTest", slots = c(b = "character"))
337s > try(validObject(x))
337s Error in validObject(x) : 
337s   invalid class "untzUpgrTest" object: slots in class definition but not in object: "b"
337s > try(capture.output(unitizer:::renameSlot(x, "c", "b"), type = "message"))
337s Error in unitizer:::renameSlot(x, "c", "b") : 
337s   Old slot `c` doesn't exist in object
337s > x.rename <- unitizer:::renameSlot(x, "a", "b")
337s > validObject(x.rename)
337s [1] TRUE
337s > 
337s > # - "Later but valid version" --------------------------------------------------
337s > 
337s > test.file <- file.path(TMP.DIR, "tests.R")
337s > cat("1 + 1", file = test.file)
337s > unitizer:::capture_output(unitize(test.file, auto.accept = "new"))
338s > version <- unlist(strsplit(as.character(packageVersion("unitizer")),
338s +     ".", fixed = TRUE))
338s > version[1] <- as.character(as.numeric(version[1]) + 1)
338s > version.new <- paste0(version, collapse = ".")
338s > unitizer.rds <- readRDS(file.path(TMP.DIR, "tests.unitizer", "data.rds"))
338s > unitizer.rds@version <- version.new
338s > # this should work
338s > !nchar(unitizer:::unitizer_valid(unitizer.rds))
338s [1] TRUE
338s > # now lets cause an error
338s > unitizer.rds@eval.time <- runif(5)
338s > grepl("NB: ", unitizer:::unitizer_valid(unitizer.rds))
338s [1] TRUE
338s > 
338s > # - "Failing Test w/ Upgrade" --------------------------------------------------
338s > 
338s > # Unitizer will fail, but also requires an upgrade.  This ensures the failure is
338s > # shown despite the need for an upgrade.
338s > tdir <- tempfile()
338s > dir.create(tdir)
338s > dir.create(file.path(tdir, "fail-and-upgrade.unitizer"))
338s > file.copy(file.path("_helper", "unitizers", "fail-and-upgrade.R"), tdir)
338s [1] TRUE
338s > file.copy(
338s +   file.path("_helper", "unitizers", "fail-and-upgrade.unitizer", "data.rds"),
338s +   file.path(tdir, "fail-and-upgrade.unitizer")
338s + )
338s [1] TRUE
338s > odir <- setwd(tdir)
338s > try(unitize(file.path("fail-and-upgrade.R")))
338s 
338s Warning in check_call_stack() :
338s   It appears you are running unitizer inside an error handling function such as 
338s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
338s couraged as it may cause unpredictable behavior from unitizer in the event tests
338s produce conditions / errors.  We strongly recommend you re-run your tests 
338s outside of such handling functions.
338s Warning in history_capt(history, interactive.mode) :
338s   Unable to capture history in non-interactive mode.
338s +------------------------------------------------------------------------------+
338s | unitizer for: fail-and-upgrade.R                                             |
338s +------------------------------------------------------------------------------+
338s 
338s              Pass Fail
338s  <untitled>     -    1
338s ......................
338s                 -    1
338s 
338s - Failed -----------------------------------------------------------------------
338s 
338s | The following test failed because the new evaluation does not match the 
338s | reference value from the store. Overwrite with new result ([Y]es, [N]o, 
338s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
338s 
338s # fails with newer versions of unitizer so we can make sure upgrade shows error
338s # and doesn't just gag at the upgrade prompt
338s 
338s > packageVersion("unitizer") < "1.4.15"
338s [1] FALSE
338s 
338s | Value mismatch: 
338s 
338s < .ref       > .new     
338s @@ 1 @@      @@ 1 @@    
338s < [1] TRUE   > [1] FALSE
338s 
338s | State mismatch; see `.DIFF$state` for details.
338s 
338s | User input required to proceed, but we are in non-interactive mode.
338s 
338s | unitizer unchanged.
338s 
338s |   * Fail: packageVersion("unitizer") < "1.4.15"
338s | in 'fail-and-upgrade.R'
338s 
338s | Newly evaluated tests do not match unitizer (Fail: 1); see above for more 
338s | info, or run in interactive mode.
338s 
338s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
338s   Cannot proceed in non-interactive mode.
338s > 
338s > # Confirm upgrade needed
338s > capture.output(unitizer:::read_line_set_vals(c('Y', 'Q')))
338s character(0)
338s > out <- unitizer:::capture_output(
338s +   unitize(file.path("fail-and-upgrade.R"), interactive.mode=TRUE)
338s + )
338s > out[] <- lapply(out, blat_vers)
338s > out
338s - Output -----------------------------------------------------------------------
338s 
338s 
338s | 
338s | The following unitizer will be upgraded to version '<version>':
338s | 
338s | - fail-and-upgrade.unitizer (at '<version>')
338s 
338s unitizer> Y
338s 
338s +------------------------------------------------------------------------------+
338s | unitizer for: fail-and-upgrade.R                                             |
338s +------------------------------------------------------------------------------+
338s 
338s              Pass Fail
338s  <untitled>     -    1
338s ......................
338s                 -    1
338s 
338s - Failed -----------------------------------------------------------------------
339s 
339s | The following test failed because the new evaluation does not match the 
339s | reference value from the store. Overwrite with new result ([Y]es, [N]o, 
339s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
339s 
339s # fails with newer versions of unitizer so we can make sure upgrade shows error
339s # and doesn't just gag at the upgrade prompt
339s 
339s > packageVersion("unitizer") < "1.4.15"
339s [1] FALSE
339s 
339s | Value mismatch: 
339s 
339s < .ref       > .new     
339s @@ 1 @@      @@ 1 @@    
339s < [1] TRUE   > [1] FALSE
339s 
339s | State mismatch; see `.DIFF$state` for details.
339s 
339s unitizer> Q
339s 
339s | unitizer unchanged.
339s 
339s - Message ----------------------------------------------------------------------
339s 
339s | unitizer upgrades are IRREVERSIBLE and not backwards compatible. 
339s | Proceed?
339s 
339s | No changes recorded.
339s > 
339s > unitizer:::read_line_set_vals(NULL)
339s > setwd(odir)
339s > unlink(tdir, recursive=TRUE)
339s > 
339s > 
339s PASS
339s Begin testing t-utz1.R
339s 
339s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
339s Copyright (C) 2024 The R Foundation for Statistical Computing
339s Platform: arm-unknown-linux-gnueabihf (32-bit)
339s 
339s R is free software and comes with ABSOLUTELY NO WARRANTY.
339s You are welcome to redistribute it under certain conditions.
339s Type 'license()' or 'licence()' for distribution details.
339s 
339s R is a collaborative project with many contributors.
339s Type 'contributors()' for more information and
339s 'citation()' on how to cite R or R packages in publications.
339s 
339s Type 'demo()' for some demos, 'help()' for on-line help, or
339s 'help.start()' for an HTML browser interface to help.
339s Type 'q()' to quit R.
339s 
339s > # - "No Attach Test" -----------------------------------------------------------
339s > 
339s > f <- paste0(tempfile(), ".R")
339s > writeLines("1 + 1", f)
339s > try(unitizer::unitize(f))
339s 
339s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
339s   `unitizer` package must be attached to the search path, e.g. with `library(unitizer)`
339s > unlink(f)
339s > 
339s > # - "Usual Setup" --------------------------------------------------------------
339s > 
339s > source(file.path("_helper", "init.R"))
339s > source(file.path("aammrtf", "ref.R")); make_ref_obj_funs("refobjs")
339s > source(file.path("_helper", "pkgs.R"))
339s Install Packages
343s Setup Demos
343s > 
343s > # - "custom history file" ------------------------------------------------------
343s > 
343s > # Random history file
343s > unitizer:::read_line_set_vals(c("1 + 1", "Y", "Y", "Y", "Y", "N"))
343s > hist.file <- tempfile()
343s > invisible(
343s +   unitizer:::capture_output(
343s +     unitize(FLM.TEST.FILE, interactive.mode = TRUE, history = hist.file)
343s + ) )
344s > hist.dat <- readLines(hist.file)
344s > unlink(hist.file)
344s > 
344s > # History only works in interactive mode
344s > if (interactive()) {
344s +   identical(hist.dat, c("## <unitizer> (original history will be restored on exit)",
344s +     "library(utzflm, lib.loc = getOption(\"unitizer.tmp.lib.loc\"))",
344s +     "dat <- data.frame(x = 1:100, y = (1:100)^2)", "res <- fastlm(dat$x, dat$y)",
344s +     "res", "1 + 1", "get_slope(res)", "get_rsq(res)", "fastlm(1:100, 1:10)"))
344s + } else {
344s +   identical(hist.dat, character())
344s + }
344s [1] TRUE
344s > # - "bad history" --------------------------------------------------------------
344s > 
344s > bad.hist <- try(unitize(FLM.TEST.FILE, history = list()), silent = TRUE)
344s 
344s > inherits(bad.hist, "try-error")
344s [1] TRUE
344s > conditionMessage(attr(bad.hist, "condition"))
344s [1] "Argument `history` must be the name of a file that can be opened in \"at\" mode, or \"\", or NULL"
344s > 
344s > # - "bad seed" -----------------------------------------------------------------
344s > 
344s > # gsub needed b/c of inconsistent error calls in 3.3.2 and 3.4
344s > old.opt <- options(unitizer.seed = "bad.seed")
344s > txtopt1 <- unitizer:::capture_output(try(unitize(FLM.TEST.FILE)))
344s > options(unitizer.seed = list("bad.seed"))
344s > txtopt2 <- unitizer:::capture_output(try(unitize(FLM.TEST.FILE)))
344s > # set.seed gained an argument c.a. R3.6 that caused error mismatch
344s > txtopt2$message[grepl("\\(function \\(seed", txtopt2$message,
344s +     ignore.case = TRUE)] <- ""
344s > options(old.opt)
344s > 
344s > 
344s > unitizer:::clean_eval_exp(txtopt1)
344s - Output -----------------------------------------------------------------------
344s 
344s 
344s - Message ----------------------------------------------------------------------
344s 
344s Error in do.call(set.seed, seed.dat) : second argument must be a list
344s Error in as.state(state, test.files) : 
344s   Internal Error: failed processing raw state object, contact maintainer. (Unable to set random seed; make sure `getOption('unitizer.seed')` is a list of possible arguments to `set.seed`, or set `seed` slot to be less than 2L.)
344s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
344s   Argument `state` could not be evaluated.
344s > # supplied seed not valid int
344s > # unexpectedly exited; not clear why all stderr is not being captured by
344s > # capture_output...
344s > txtopt2
344s - Output -----------------------------------------------------------------------
344s 
344s 
344s - Message ----------------------------------------------------------------------
344s 
344s 
344s   NAs introduced by coercion
344s 
344s   supplied seed is not a valid integer
344s Error in as.state(state, test.files) : 
344s   Internal Error: failed processing raw state object, contact maintainer. (Unable to set random seed; make sure `getOption('unitizer.seed')` is a list of possible arguments to `set.seed`, or set `seed` slot to be less than 2L.)
344s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
344s   Argument `state` could not be evaluated.
344s > 
344s > # - "create dir" ---------------------------------------------------------------
344s > 
344s > # Unitizers in different directories that don't exist; also test using a
344s > # function to generate those directories
344s > get_store_id <- function(x) {
344s +     file <- basename(x)
344s +     dir <- dirname(dirname(x))
344s +     file.path(dir, "unitizer2", sub("(.*)\\.R", "\\1.unitizer",
344s +         file))
344s + }
344s > unitizer:::read_line_set_vals(c("N"))
344s > txt1 <- unitizer:::capture_output(
344s +   untz1 <- try(unitize_dir(FLM.TEST.DIR, get_store_id, interactive.mode = TRUE))
344s + )
344s > unitizer:::read_line_set_vals(c("Y", "Q"))
344s > txt2 <- unitizer:::capture_output(untz2 <- unitize_dir(FLM.TEST.DIR,
344s +     get_store_id, interactive.mode = TRUE))
344s > 
344s > inherits(untz1, "try-error")
344s [1] TRUE
344s > inherits(untz2, "unitizer_results")
344s [1] TRUE
344s > 
344s > # Some of the text must be ablated
344s > rem_txt <- function(x) {
344s +     crd <- grep("Create directory\\?", x)
344s +     if (!length(crd))
344s +         stop("Logic Error: this must be a create directory test")
344s +     x[-(2L:(crd[[1L]] - 1L))]
344s + }
344s > txt1$output <- rem_txt(txt1$output)
344s > txt2$output <- rem_txt(txt2$output)
344s > 
344s > # must create the following directory
344s > # cannot proceed w/o creating directories
344s > 
344s > txt1
344s - Output -----------------------------------------------------------------------
344s 
344s 
344s | Create directory?
344s 
344s unitizer> N
344s 
344s - Message ----------------------------------------------------------------------
344s 
344s Warning in check_call_stack() :
344s   It appears you are running unitizer inside an error handling function such as 
344s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
344s couraged as it may cause unpredictable behavior from unitizer in the event tests
344s produce conditions / errors.  We strongly recommend you re-run your tests 
344s outside of such handling functions.
344s Error in unitize_core(test.files = test.files, store.ids = store.ids,  : 
344s   Cannot proceed without creating directories.
344s > txt2
344s - Output -----------------------------------------------------------------------
344s 
344s 
344s | Create directory?
344s 
344s unitizer> Y
344s 
344s | Summary of files in common directory 'unitizer':
344s | 
344s |                        Pass Fail  New
344s | *1.         fastlm1.R     -    -    4
344s | *2.         fastlm2.R     -    -    1
344s | *3. unitizer.fastlm.R     -    -    3
344s | .....................................
344s |                           -    -    8
344s | Legend:
344s | * `unitizer` requires review
344s 
344s | Type number of unitizer to review, 'A' to review all that require review
344s 
344s unitizer> Q
344s 
344s - Message ----------------------------------------------------------------------
344s 
344s 
344s > 
344s > # - print / dir ----------------------------------------------------------------
344s > 
344s > # quit from all at once
344s > unitizer:::read_line_set_vals(c("A", "QQ", "Q"))
344s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
344s 
345s | Summary of files in common directory 'unitizer':
345s | 
345s |                        Pass Fail  New
345s | *1.         fastlm1.R     -    -    4
345s | *2.         fastlm2.R     -    -    1
345s | *3. unitizer.fastlm.R     -    -    3
345s | .....................................
345s |                           -    -    8
345s | Legend:
345s | * `unitizer` requires review
345s 
345s | Type number of unitizer to review, 'A' to review all that require review
345s 
345s unitizer> A
345s 
345s +------------------------------------------------------------------------------+
345s | unitizer for: unitizer/fastlm1.R                                             |
345s +------------------------------------------------------------------------------+
345s 
345s              Pass Fail  New
345s  <untitled>     -    -    4
345s ...........................
345s                 -    -    4
345s 
345s - New --------------------------------------------------------------------------
345s 
345s | The 4 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
345s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
345s 
345s # Assignments and calls to `library` are not considered tests by
345s # `unitizer` so you will not need to review them
345s 
345s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
345s > dat <- data.frame(x = 1:100, y = (1:100)^2)
345s > res <- fastlm(dat$x, dat$y)
345s 
345s # The `unitizer>` prompt is like the standard R prompt. You may
345s # enter expressions such as `lm(y ~ x, dat)$coefficients`, or
345s # `str(res)`.
345s #
345s # Once you are done reviewing, you need to tell `unitizer` you
345s # accept the test by typing 'Y' at the prompt.  Enter 'H' for help.
345s 
345s > res
345s intercept     slope       rsq 
345s -1717.000   101.000     0.939 
345s attr(,"class")
345s [1] "fastlm"
345s 
345s unitizer> QQ
345s 
345s | No changes recorded.
345s | unitizer unchanged.
345s 
345s | Summary of files in common directory 'unitizer':
345s | 
345s |                        Pass Fail  New
345s | *1.         fastlm1.R     -    -    4
345s | *2.         fastlm2.R     -    -    1
345s | *3. unitizer.fastlm.R     -    -    3
345s | .....................................
345s |                           -    -    8
345s | Legend:
345s | * `unitizer` requires review
345s 
345s | Type number of unitizer to review, 'A' to review all that require review
345s 
345s unitizer> Q
345s 
345s > 
345s > # Now test `unitize_dir`; we are testing all different combination of whether
345s > # a unitizer is accepted and updated
345s > # Review all
345s > # Accept all
345s > # Quit
345s > # Quit
345s > # Re-evalute
345s > # Review remaining
345s > # Accept all
345s > # Quit from review
345s > # Quit completely
345s > 
345s > unitizer:::read_line_set_vals(c("A", "Y", "Y", "Y", "Y", "Y",
345s +     "Q", "Q", "R", "A", "Y", "Y", "Q", "Q"))
345s > untz3a <- unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
345s 
345s | Summary of files in common directory 'unitizer':
345s | 
345s |                        Pass Fail  New
345s | *1.         fastlm1.R     -    -    4
345s | *2.         fastlm2.R     -    -    1
345s | *3. unitizer.fastlm.R     -    -    3
345s | .....................................
345s |                           -    -    8
345s | Legend:
345s | * `unitizer` requires review
345s 
345s | Type number of unitizer to review, 'A' to review all that require review
345s 
345s unitizer> A
345s 
345s +------------------------------------------------------------------------------+
345s | unitizer for: unitizer/fastlm1.R                                             |
345s +------------------------------------------------------------------------------+
345s 
345s              Pass Fail  New
345s  <untitled>     -    -    4
345s ...........................
345s                 -    -    4
345s 
345s - New --------------------------------------------------------------------------
345s 
345s | The 4 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
345s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
345s 
345s # Assignments and calls to `library` are not considered tests by
345s # `unitizer` so you will not need to review them
345s 
345s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
345s > dat <- data.frame(x = 1:100, y = (1:100)^2)
345s > res <- fastlm(dat$x, dat$y)
345s 
345s # The `unitizer>` prompt is like the standard R prompt. You may
345s # enter expressions such as `lm(y ~ x, dat)$coefficients`, or
345s # `str(res)`.
345s #
345s # Once you are done reviewing, you need to tell `unitizer` you
345s # accept the test by typing 'Y' at the prompt.  Enter 'H' for help.
345s 
345s > res
345s intercept     slope       rsq 
345s -1717.000   101.000     0.939 
345s attr(,"class")
345s [1] "fastlm"
345s 
345s unitizer> Y
345s 
345s # There are three more tests to review; accept them with 'Y'
345s 
345s > get_slope(res)
345s [1] 101
345s 
345s unitizer> Y
345s 
345s > get_rsq(res)
345s [1] 0.939
345s 
345s unitizer> Y
345s 
345s # This last test is expected to cause an error; press 'Y' to
345s # accept it so future checks can confirm the same error persists
345s 
345s > fastlm(1:100, 1:10)
345s Error in fastlm(1:100, 1:10) : 
345s   Arguments `x` and `y` must be the same length.
345s 
345s unitizer> Y
345s 
345s = Finalize Unitizer ============================================================
345s 
345s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
345s | - Adding 4 out of 4 new tests
345s 
345s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, [QQ]uit All)?
345s 
345s unitizer> Y
345s 
345s | unitizer updated.
345s 
345s +------------------------------------------------------------------------------+
345s | unitizer for: unitizer/fastlm2.R                                             |
345s +------------------------------------------------------------------------------+
345s 
345s              Pass Fail  New
345s  <untitled>     -    -    1
345s ...........................
345s                 -    -    1
345s 
345s - New --------------------------------------------------------------------------
345s 
345s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
345s | [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
345s 
345s # For internal tests only; not for demo
345s 
345s > x <- 1:10
345s > y <- 1:10^3
345s > res <- summary(lm(y ~ x, data.frame(x = x, y = y)))
345s > intercept <- res$coefficients[1, 1]
345s > slope <- res$coefficients[2, 1]
345s > rsq <- res$r.squared
345s > structure(c(intercept = intercept, slope = slope, rsq = rsq), 
345s +     class = "fastlm")
345s intercept     slope       rsq 
345s  4.95e+02  1.00e+00  9.90e-05 
345s attr(,"class")
345s [1] "fastlm"
345s 
345s unitizer> Q
345s 
345s | No changes recorded.
345s | unitizer unchanged.
345s 
345s +------------------------------------------------------------------------------+
345s | unitizer for: unitizer/unitizer.fastlm.R                                     |
345s +------------------------------------------------------------------------------+
345s 
345s              Pass Fail  New
345s  <untitled>     -    -    3
345s ...........................
345s                 -    -    3
345s 
345s - New --------------------------------------------------------------------------
345s 
345s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
345s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
345s 
345s # Extra test file for internal tests; not for DEMO
345s 
345s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
345s > x <- 1:10
345s > y <- x^3
345s > res <- fastlm(x, y)
345s > get_slope(res)
345s [1] 105
345s 
345s unitizer> Q
345s 
345s | No changes recorded.
345s | unitizer unchanged.
345s 
345s | Summary of files in common directory 'unitizer':
345s | 
345s |                        Pass Fail  New
345s | $1.         fastlm1.R     ?    ?    ?
345s | *2.         fastlm2.R     -    -    1
345s | *3. unitizer.fastlm.R     -    -    3
345s | .....................................
345s |                           ?    ?    ?
345s | Legend:
345s | * `unitizer` requires review
345s | $ `unitizer` has been modified and needs to be re-run to recompute summary
345s 
345s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
345s | to re-run all updated
345s 
345s unitizer> R
345s 
345s | Summary of files in common directory 'unitizer':
345s | 
345s |                        Pass Fail  New
345s |  1.         fastlm1.R     4    -    -
345s | *2.         fastlm2.R     -    -    1
345s | *3. unitizer.fastlm.R     -    -    3
345s | .....................................
345s |                           4    -    4
345s | Legend:
345s | * `unitizer` requires review
345s 
345s | Type number of unitizer to review, 'A' to review all that require review
345s 
345s unitizer> A
345s 
345s +------------------------------------------------------------------------------+
345s | unitizer for: unitizer/fastlm2.R                                             |
345s +------------------------------------------------------------------------------+
345s 
345s              Pass Fail  New
345s  <untitled>     -    -    1
345s ...........................
345s                 -    -    1
345s 
345s - New --------------------------------------------------------------------------
345s 
345s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
345s | [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
345s 
345s # For internal tests only; not for demo
345s 
345s > x <- 1:10
345s > y <- 1:10^3
345s > res <- summary(lm(y ~ x, data.frame(x = x, y = y)))
345s > intercept <- res$coefficients[1, 1]
345s > slope <- res$coefficients[2, 1]
345s > rsq <- res$r.squared
345s > structure(c(intercept = intercept, slope = slope, rsq = rsq), 
345s +     class = "fastlm")
345s intercept     slope       rsq 
345s  4.95e+02  1.00e+00  9.90e-05 
345s attr(,"class")
345s [1] "fastlm"
345s 
345s unitizer> Y
345s 
345s = Finalize Unitizer ============================================================
345s 
345s | You will IRREVERSIBLY modify 'unitizer/fastlm2.unitizer' by:
345s | - Adding 1 out of 1 new tests
345s 
345s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, [QQ]uit All)?
345s 
345s unitizer> Y
345s 
345s | unitizer updated.
345s 
345s +------------------------------------------------------------------------------+
345s | unitizer for: unitizer/unitizer.fastlm.R                                     |
345s +------------------------------------------------------------------------------+
345s 
345s              Pass Fail  New
345s  <untitled>     -    -    3
345s ...........................
345s                 -    -    3
345s 
345s - New --------------------------------------------------------------------------
345s 
345s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
345s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
346s 
346s # Extra test file for internal tests; not for DEMO
346s 
346s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
346s > x <- 1:10
346s > y <- x^3
346s > res <- fastlm(x, y)
346s > get_slope(res)
346s [1] 105
346s 
346s unitizer> Q
346s 
346s | No changes recorded.
346s | unitizer unchanged.
346s 
346s | Summary of files in common directory 'unitizer':
346s | 
346s |                        Pass Fail  New
346s |  1.         fastlm1.R     4    -    -
346s | $2.         fastlm2.R     ?    ?    ?
346s | *3. unitizer.fastlm.R     -    -    3
346s | .....................................
346s |                           ?    ?    ?
346s | Legend:
346s | * `unitizer` requires review
346s | $ `unitizer` has been modified and needs to be re-run to recompute summary
346s 
346s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
346s | to re-run all updated
346s 
346s unitizer> Q
346s 
346s > untz3a.get.all <- vapply(get_unitizer(untz3a), class, character(1L))
346s > identical(untz3a.get.all, c("unitizer", "unitizer", "logical"))
346s [1] TRUE
346s > print(untz3a)
346s Summary of tests (accept/total):
346s 
346s  id         test.file       New    Passed    Totals
346s   1         fastlm1.R       0/0       4/4       4/4 $
346s   2         fastlm2.R       1/1       0/0       1/1  
346s   3 unitizer.fastlm.R       0/3       0/0       0/3 *
346s -----------------------------------------------------
346s   0            Totals       1/4       4/4       5/8
346s 
346s * unitizer was not saved
346s $ unitizer was saved in prior evaluation
346s 
346s Test files in common directory 'tests/unitizer'
346s > untz3a.first <- untz3a[[1L]]
346s > print(untz3a.first)
346s Test File: tests/unitizer/fastlm1.R
346s Store ID: tests/unitizer/fastlm1.unitizer
346s 
346s   id                           call ignored status user reviewed
346s 1  1 library(utzflm, lib.loc = g...       * Passed    Y    FALSE
346s 2  2 dat <- data.frame(x = 1:100...       * Passed    Y    FALSE
346s 3  3    res <- fastlm(dat$x, dat$y)       * Passed    Y    FALSE
346s 4  4                            res         Passed    Y    FALSE
346s 5  5                 get_slope(res)         Passed    Y    FALSE
346s 6  6                   get_rsq(res)         Passed    Y    FALSE
346s 7  7            fastlm(1:100, 1:10)         Passed    Y    FALSE
346s 
346s You chose NOT to save these changes to the unitizer store
346s > 
346s > identical(class(untz3a), "unitizer_results")
346s [1] TRUE
346s > identical(
346s +   lapply(untz3a, class),
346s +   replicate(3L, c("unitizer_result", "data.frame"), simplify = FALSE)
346s + )
346s [1] TRUE
346s > 
346s > untz3a.cpy <- untz3a
346s > # need to drop temp file attributes for tests
346s > for (i in seq_along(untz3a.cpy)) {
346s +     attr(untz3a.cpy[[i]], "test.file") <- basename(attr(untz3a.cpy[[i]],
346s +         "test.file"))
346s +     attr(untz3a.cpy[[i]], "store.id") <- basename(attr(untz3a.cpy[[i]],
346s +         "store.id"))
346s + }
346s > all.equal(untz3a.cpy, rds("unitize_res1"))
346s [1] TRUE
346s > 
346s > # dummy class for errors
346s > untz3a.first.bad <- untz3a.first
346s > setClass("uhtsdfoqiuerhzb", slots=c(a='integer'))
346s > attr(untz3a.first.bad, "store.id") <- new("uhtsdfoqiuerhzb")
346s > print(untz3a.first.bad)
346s Test File: tests/unitizer/fastlm1.R
346s Store ID: <untranslateable store.id>
346s 
346s   id                           call ignored status user reviewed
346s 1  1 library(utzflm, lib.loc = g...       * Passed    Y    FALSE
346s 2  2 dat <- data.frame(x = 1:100...       * Passed    Y    FALSE
346s 3  3    res <- fastlm(dat$x, dat$y)       * Passed    Y    FALSE
346s 4  4                            res         Passed    Y    FALSE
346s 5  5                 get_slope(res)         Passed    Y    FALSE
346s 6  6                   get_rsq(res)         Passed    Y    FALSE
346s 7  7            fastlm(1:100, 1:10)         Passed    Y    FALSE
346s 
346s You chose NOT to save these changes to the unitizer store
346s > 
346s > # this is a bit contrived as it isn't possible to directly create an empty
346s > # unitize dir result
346s > untz3a.empty <- untz3a[0]
346s > class(untz3a.empty) <- class(untz3a)
346s > print(untz3a.empty)
346s | No unitizers
346s 
346s > 
346s > # Now accept the last remaining tests
346s > # unlink(list.files(test.dir, pattern="\\.unitizer$", full.names=TRUE),
346s > # recursive=TRUE)
346s > # Invalid input
346s > # Review third unitizer
346s > # Accept all
346s > # Re-eval and exit (again, not clear this is right thing to do)
346s > unitizer:::read_line_set_vals(c("3000", "3", "Y", "Y", "Y", "Y",
346s +     "R"))
346s > untz3b <- unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
346s 
346s | Summary of files in common directory 'unitizer':
346s | 
346s |                        Pass Fail  New
346s |  1.         fastlm1.R     4    -    -
346s |  2.         fastlm2.R     1    -    -
346s | *3. unitizer.fastlm.R     -    -    3
346s | .....................................
346s |                           5    -    3
346s | Legend:
346s | * `unitizer` requires review
346s 
346s | Type number of unitizer to review, 'A' to review all that require review
346s 
346s unitizer> 3000
346s | Type a number in `1:3` at the prompt
346s [1] 3000
346s unitizer> 3
346s +------------------------------------------------------------------------------+
346s | unitizer for: unitizer/unitizer.fastlm.R                                     |
346s +------------------------------------------------------------------------------+
346s 
346s              Pass Fail  New
346s  <untitled>     -    -    3
346s ...........................
346s                 -    -    3
346s 
346s - New --------------------------------------------------------------------------
346s 
346s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
346s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
346s 
346s # Extra test file for internal tests; not for DEMO
346s 
346s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
346s > x <- 1:10
346s > y <- x^3
346s > res <- fastlm(x, y)
346s > get_slope(res)
346s [1] 105
346s 
346s unitizer> Y
346s 
346s > get_rsq(res)
346s [1] 0.862
346s 
346s unitizer> Y
346s 
346s > get_intercept(res)
346s [1] -277
346s 
346s unitizer> Y
346s 
346s = Finalize Unitizer ============================================================
346s 
346s | You will IRREVERSIBLY modify 'unitizer/unitizer.fastlm.unitizer' by:
346s | - Adding 3 out of 3 new tests
346s 
346s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
346s 
346s unitizer> Y
346s 
346s | unitizer updated.
346s 
346s | Summary of files in common directory 'unitizer':
346s | 
346s |                        Pass Fail
346s |  1.         fastlm1.R     4    -
346s |  2.         fastlm2.R     1    -
346s | $3. unitizer.fastlm.R     ?    ?
346s | ................................
346s |                           ?    ?
346s | Legend:
346s | $ `unitizer` has been modified and needs to be re-run to recompute summary
346s 
346s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
346s | to re-run all updated
346s 
346s unitizer> R
346s 
346s | Summary of files in common directory 'unitizer':
346s | 
346s |                        Pass Fail
346s |  1.         fastlm1.R     4    -
346s |  2.         fastlm2.R     1    -
346s |  3. unitizer.fastlm.R     3    -
346s | ................................
346s |                           8    -
346s 
346s | 8/8 tests passed; nothing to review.
346s 
346s > print(untz3b)
346s Summary of tests (accept/total):
346s 
346s  id         test.file    Passed
346s   1         fastlm1.R       4/4 *
346s   2         fastlm2.R       1/1 *
346s   3 unitizer.fastlm.R       3/3 $
346s ---------------------------------
346s   0            Totals       8/8
346s 
346s * unitizer was not saved
346s $ unitizer was saved in prior evaluation
346s 
346s Test files in common directory 'tests/unitizer'
346s > identical(
346s +   vapply(get_unitizer(untz3b), class, character(1L)), rep("unitizer", 3L)
346s + )
346s [1] TRUE
346s > # - "namespace conflict" -------------------------------------------------------
346s > 
346s > # Namespace conflicts; unfortunately if either `covr` or `data.table` are
346s > # loaded this may not work quite right.  Also as of `covr` 2.2.2 it seems that
346s > # the R session `covr` launches now seems to load the covr namespace.  The
346s > # logic here ensures covr namespace is always loaded for this tests, if
346s > # possible.  So we omit the line were what namespaces could not be unloaded are
346s > # mentioned.
346s > 
346s > unitizer:::read_line_set_vals("Y")
346s > ns.conf1 <- unitizer:::capture_output(
346s +   unitize_dir(FLM.TEST.DIR, state = "pristine", interactive.mode = TRUE)
346s + )
347s > ns.conf1$message <- ns.conf1$message[-3]
347s > ns.conf1
347s - Output -----------------------------------------------------------------------
347s 
347s 
347s | Summary of files in common directory 'unitizer':
347s | 
347s |                        Pass Fail
347s |  1.         fastlm1.R     4    -
347s |  2.         fastlm2.R     1    -
347s |  3. unitizer.fastlm.R     3    -
347s | ................................
347s |                           8    -
347s 
347s | Do you wish to proceed despite compromised state tracking
347s | ([Y]es, [N]o)?
347s 
347s unitizer> Y
347s 
347s - Message ----------------------------------------------------------------------
347s 
347s | `unitizer` was unable to run with `options` state tracking enabled starting 
347s | with the first test file because the following namespaces could not be 
347s 
347s | You may proceed normally but be aware that option state was not managed 
347s | starting with the file in question, and option state will not be managed 
347s | during review, or restored to original values after `unitizer` completes 
347s | evaluation.  You may quit `unitizer` now to avoid any changes.  See `?unitiz-
347s | erState` for more details.
347s 
347s | 8/8 tests passed; nothing to review.
347s 
347s > 
347s > unitizer:::read_line_set_vals("N")
347s > ns.conf2 <- unitizer:::capture_output(
347s +   unitize_dir(FLM.TEST.DIR, state = "pristine", interactive.mode = TRUE)
347s + )
347s > ns.conf2$message <- ns.conf2$message[-3]
347s > ns.conf2
347s - Output -----------------------------------------------------------------------
347s 
347s 
347s | Summary of files in common directory 'unitizer':
347s | 
347s |                        Pass Fail
347s |  1.         fastlm1.R     4    -
347s |  2.         fastlm2.R     1    -
347s |  3. unitizer.fastlm.R     3    -
347s | ................................
347s |                           8    -
347s 
347s | Do you wish to proceed despite compromised state tracking
347s | ([Y]es, [N]o)?
347s 
347s unitizer> N
347s 
347s - Message ----------------------------------------------------------------------
347s 
347s | `unitizer` was unable to run with `options` state tracking enabled starting 
347s | with the first test file because the following namespaces could not be 
347s 
347s | You may proceed normally but be aware that option state was not managed 
347s | starting with the file in question, and option state will not be managed 
347s | during review, or restored to original values after `unitizer` completes 
347s | evaluation.  You may quit `unitizer` now to avoid any changes.  See `?unitiz-
347s | erState` for more details.
347s 
347s > 
347s > # Non-interactive; also testing what happens when we run a test with errors
347s > # inside a try block
347s > 
347s > try(unitize_dir(FLM.TEST.DIR, state = "pristine", interactive.mode = FALSE))
347s 
347s Warning in check_call_stack() :
347s   It appears you are running unitizer inside an error handling function such as 
347s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
347s couraged as it may cause unpredictable behavior from unitizer in the event tests
347s produce conditions / errors.  We strongly recommend you re-run your tests 
347s outside of such handling functions.
347s 
347s 
347s 
347s 
347s 
347s 
347s | Unexpectedly exited evaluation attempt when executing test expression:
347s | > fastlm(1:100, 1:10)
347s | Make sure you are not calling `unitize` inside a `tryCatch`/`try` block, 
347s | invoking a restart defined outside `unitize`, evaluating an expression that 
347s | calls `quit()`/`q()`, or quitting from a `browser()`/`debug()`/`trace()`. If 
347s | none of these apply yet you are seeing this message please contact package 
347s | maintainer.
347s 
347s Error in fastlm(1:100, 1:10) : 
347s   Arguments `x` and `y` must be the same length.
347s > ns.conf3 <- unitizer:::capture_output(
347s +   try(
347s +     unitize(
347s +       file.path(FLM.TEST.DIR, "fastlm2.R"), state = "pristine",
347s +       interactive.mode = FALSE
347s + ) ) )
348s > ns.conf3$message <- ns.conf3$message[-grep('unloaded', ns.conf3$message)]
348s > ns.conf3
348s - Output -----------------------------------------------------------------------
348s 
348s 
348s - Message ----------------------------------------------------------------------
348s 
348s Warning in check_call_stack() :
348s   It appears you are running unitizer inside an error handling function such as 
348s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
348s couraged as it may cause unpredictable behavior from unitizer in the event tests
348s produce conditions / errors.  We strongly recommend you re-run your tests 
348s outside of such handling functions.
348s Warning in history_capt(history, interactive.mode) :
348s   Unable to capture history in non-interactive mode.
348s | `unitizer` was unable to run with `options` state tracking enabled starting 
348s | with the first test file because the following namespaces could not be 
348s 
348s Error in unitize_browse(unitizers = unitizers[valid], mode = mode, interactive.mode = interactive.mode,  : 
348s   Unable to proceed in non-interactive mode; set options state tracking to a value
348s less than or equal to search path state tracking or see vignette for other 
348s workarounds.
348s > 
348s > # - "Removing Tests" -----------------------------------------------------------
348s > 
348s > # Removing tests; del2 has the same tests as del1, but with some removed
348s > extra.dir <- file.path(FLM.TEST.DIR, "..", "extra")
348s > unitize(file.path(extra.dir, "del1.R"), auto.accept = "new", interactive.mode = FALSE)
348s 
348s Warning in history_capt(history, interactive.mode) :
348s   Unable to capture history in non-interactive mode.
348s +------------------------------------------------------------------------------+
348s | unitizer for: extra/del1.R                                                   |
348s +------------------------------------------------------------------------------+
348s 
348s               Pass Fail  New
348s  basic tests     -    -    3
348s   more tests     -    -    3
348s ............................
348s                  -    -    6
348s 
348s | Auto-accepting changes...
348s | unitizer updated.
348s 
348s > unitizer:::read_line_set_vals(c("Y", "YY", "Y", "Y"))
348s > unitize(
348s +   file.path(extra.dir, "del2.R"),
348s +   store.id = file.path(extra.dir, "del1.unitizer"),
348s +   interactive.mode = TRUE
348s + )
348s 
348s +------------------------------------------------------------------------------+
348s | unitizer for: extra/del2.R                                                   |
348s +------------------------------------------------------------------------------+
348s 
348s               Pass Fail  Del
348s  basic tests     2    -    1
348s    <unknown>     -    -    3
348s ............................
348s                  2    -    4
348s 
348s = basic tests ==================================================================
348s 
348s - Removed ----------------------------------------------------------------------
348s 
348s | The following test exists in the unitizer store but not in the new test 
348s | script. Remove test from store ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, 
348s | [Q]uit, [H]elp)?
348s 
348s > "hello"
348s [1] "hello"
348s 
348s unitizer> Y
348s 
348s = Other Removed Items ==========================================================
348s 
348s - Removed ----------------------------------------------------------------------
348s 
348s | The 3 tests in this section exist in the unitizer store but not in the new 
348s | test script. Remove tests from store ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, 
348s | [Q]uit, [H]elp)?
348s 
348s > 3
348s [1] 3
348s 
348s unitizer> YY
348s 
348s   1. 3   .  .  .  .  Removed:-
348s   2. 645 .  .  .  .  Removed:-
348s   3. 9/0 .  .  .  .  Removed:-
348s 
348s Choose 'Y' for the 3 tests shown above ([Y]es, [N]o)?
348s unitizer> Y
348s 
348s = Finalize Unitizer ============================================================
348s 
348s | You will IRREVERSIBLY modify 'extra/del1.unitizer' by:
348s | - Removing 4 out of 4 removed tests
348s 
348s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
348s 
348s unitizer> Y
348s 
348s | unitizer updated.
348s 
348s > # - "navigate" -----------------------------------------------------------------
348s > 
348s > # Update `fastlm` to cause unitizers to fail, and go through the errors
348s > update_fastlm(FLM, version = "0.1.1")
348s > inst_pak(FLM)
349s > # Try navigating through the unitizer
349s > unitizer:::read_line_set_vals(c("P", "B", "3", "N", "U", "N",
349s +     "N", "B", "U", "Q"))
349s > untz7a <- unitize(FLM.TEST.FILE, interactive.mode = TRUE)
349s 
350s +------------------------------------------------------------------------------+
350s | unitizer for: unitizer/fastlm1.R                                             |
350s +------------------------------------------------------------------------------+
350s 
350s              Pass Fail
350s  <untitled>     2    2
350s ......................
350s                 2    2
350s 
350s - Failed -----------------------------------------------------------------------
350s 
350s | The 2 tests in this section failed because the new evaluations do not match 
350s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
350s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
350s 
350s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
350s > dat <- data.frame(x = 1:100, y = (1:100)^2)
350s > res <- fastlm(dat$x, dat$y)
350s 
350s # Our fast computations do not produce the same results as our
350s # original tests so they fail.  If you need more detail than the
350s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
350s #
350s # You should reject these tests by typing 'N' at the prompt since
350s # they are incorrect.
350s 
350s > res
350s intercept     slope       rsq 
350s -3.54e+13  7.01e+11  9.39e-01 
350s attr(,"class")
350s [1] "fastlm"
350s 
350s | Value mismatch: 
350s 
350s < .ref                            > .new                          
350s @@ 1,4 @@                         @@ 1,4 @@                       
350s   intercept     slope       rsq     intercept     slope       rsq 
350s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
350s   attr(,"class")                    attr(,"class")                
350s   [1] "fastlm"                      [1] "fastlm"                  
350s 
350s | State mismatch; see `.DIFF$state` for details.
350s 
350s unitizer> P
350s 
350s | At first reviewable item; nothing to step back to
350s 
350s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
350s > dat <- data.frame(x = 1:100, y = (1:100)^2)
350s > res <- fastlm(dat$x, dat$y)
350s 
350s # Our fast computations do not produce the same results as our
350s # original tests so they fail.  If you need more detail than the
350s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
350s #
350s # You should reject these tests by typing 'N' at the prompt since
350s # they are incorrect.
350s 
350s > res
350s intercept     slope       rsq 
350s -3.54e+13  7.01e+11  9.39e-01 
350s attr(,"class")
350s [1] "fastlm"
350s 
350s | Value mismatch: 
350s 
350s < .ref                            > .new                          
350s @@ 1,4 @@                         @@ 1,4 @@                       
350s   intercept     slope       rsq     intercept     slope       rsq 
350s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
350s   attr(,"class")                    attr(,"class")                
350s   [1] "fastlm"                      [1] "fastlm"                  
350s 
350s | State mismatch; see `.DIFF$state` for details.
350s 
350s unitizer> B
350s 
350s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .        -:-
350s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .        -:-
350s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .        -:-
350s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:-
350s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:-
350s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
350s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
350s 
350s | What test do you wish to review (input a test number, [U]nreviewed)?
350s 
350s unitizer> 3
350s 
350s | You selected a test that is not normally reviewed in this mode;
350s | as such, upon test completion, you will be brought back to this menu
350s | instead of being taken to the next reviewable test.
350s 
350s - Failed -----------------------------------------------------------------------
350s 
350s | The 2 tests in this section failed because the new evaluations do not match 
350s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
350s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
350s 
350s > res <- fastlm(dat$x, dat$y)
350s unitizer> N
350s 
350s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .        -:-
350s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .        -:-
350s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .        -:N
350s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:-
350s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:-
350s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
350s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
350s 
350s | What test do you wish to review (input a test number, [U]nreviewed)?
350s 
350s unitizer> U
350s 
350s - Failed -----------------------------------------------------------------------
350s 
350s | The 2 tests in this section failed because the new evaluations do not match 
350s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
350s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
350s 
350s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
350s > dat <- data.frame(x = 1:100, y = (1:100)^2)
350s > res <- fastlm(dat$x, dat$y)
350s 
350s # Our fast computations do not produce the same results as our
350s # original tests so they fail.  If you need more detail than the
350s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
350s #
350s # You should reject these tests by typing 'N' at the prompt since
350s # they are incorrect.
350s 
350s > res
350s intercept     slope       rsq 
350s -3.54e+13  7.01e+11  9.39e-01 
350s attr(,"class")
350s [1] "fastlm"
350s 
350s | Value mismatch: 
350s 
350s < .ref                            > .new                          
350s @@ 1,4 @@                         @@ 1,4 @@                       
350s   intercept     slope       rsq     intercept     slope       rsq 
350s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
350s   attr(,"class")                    attr(,"class")                
350s   [1] "fastlm"                      [1] "fastlm"                  
350s 
350s | State mismatch; see `.DIFF$state` for details.
350s 
350s unitizer> N
350s 
350s # This one is also incorrect; reject with 'N'
350s 
350s > get_slope(res)
350s [1] 7.01e+11
350s 
350s | Value mismatch: 
350s 
350s < .ref          > .new        
350s @@ 1 @@         @@ 1 @@       
350s < [1] 101       > [1] 7.01e+11
350s 
350s | State mismatch; see `.DIFF$state` for details.
350s 
350s unitizer> N
350s 
350s = Finalize Unitizer ============================================================
350s 
350s | You made no changes to the unitizer so there is no need to update it.  While 
350s | unnecessary, you can force an update by typing O at the prompt.
350s 
350s | Exit unitizer ([Y]es, [P]rev, [B]rowse, [R]erun, f[O]rce)?
350s 
350s unitizer> B
350s 
350s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .        -:-
350s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .        -:-
350s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .        -:N
350s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:N
350s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Failed:N
350s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
350s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   Passed:-
350s 
350s | What test do you wish to review (input a test number, [U]nreviewed)?
350s 
350s unitizer> U
350s 
350s | No unreviewed tests.
350s 
350s = Finalize Unitizer ============================================================
350s 
350s | You made no changes to the unitizer so there is no need to update it.  While 
350s | unnecessary, you can force an update by typing O at the prompt.
350s 
350s | Exit unitizer ([Y]es, [P]rev, [B]rowse, [R]erun, f[O]rce)?
350s 
350s unitizer> Q
350s 
350s | Changes discarded.
350s | unitizer unchanged.
350s 
350s > attr(untz7a, "test.file") <- basename(attr(untz7a, "test.file"))
350s > attr(untz7a, "store.id") <- basename(attr(untz7a, "store.id"))
350s > path <- attr(untz7a, "test.file")
350s > path
350s [1] "fastlm1.R"
350s > (path.norm <- unitizer:::normalize_path(path, mustWork=FALSE, exists=TRUE))
350s [1] "fastlm1.R"
350s > (rel.path <- unitizer:::relativize_path(path.norm, wd=NULL, only.if.shorter=TRUE, exists=TRUE))
350s [1] "fastlm1.R"
350s > (pkg.dir <- unitizer:::get_package_dir(path.norm, exists=TRUE))
350s [1] "."
350s > untz7a
351s Test File: fastlm1.R
351s Store ID: fastlm1.unitizer
351s 
351s   id                           call ignored status user reviewed
351s 1  1 library(utzflm, lib.loc = g...       * Failed    N    FALSE
351s 2  2 dat <- data.frame(x = 1:100...       * Failed    N    FALSE
351s 3  3    res <- fastlm(dat$x, dat$y)       * Failed    N     TRUE
351s 4  4                            res         Failed    N     TRUE
351s 5  5                 get_slope(res)         Failed    N     TRUE
351s 6  6                   get_rsq(res)         Passed    Y    FALSE
351s 7  7            fastlm(1:100, 1:10)         Passed    Y    FALSE
351s 
351s You chose NOT to save these changes to the unitizer store
351s > 
351s > # - "review dir" ---------------------------------------------------------------
351s > 
351s > # list help, review first item, but do nothing
351s > unitizer:::read_line_set_vals(c("H", "1", "Q", "Q"))
351s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
351s 
351s | Summary of files in common directory 'unitizer':
351s | 
351s |                        Pass Fail
351s | *1.         fastlm1.R     2    2
351s |  2.         fastlm2.R     1    -
351s | *3. unitizer.fastlm.R     1    2
351s | ................................
351s |                           4    4
351s | Legend:
351s | * `unitizer` requires review
351s 
351s | Type number of unitizer to review, 'A' to review all that require review
351s 
351s unitizer> H
351s 
351s | Available options:
351s | - 1:3: unitizer number to review
351s | - A: Review all `unitzers` that require review (*)
351s | - AA: Review all tests
351s | - RR: Re-run all tests
351s | - Q: quit
351s | 
351s | Pick a unitizer or an option ([A]ll, [Q]uit, [H]elp)?
351s 
351s unitizer> 1
351s +------------------------------------------------------------------------------+
351s | unitizer for: unitizer/fastlm1.R                                             |
351s +------------------------------------------------------------------------------+
351s 
351s              Pass Fail
351s  <untitled>     2    2
351s ......................
351s                 2    2
351s 
351s - Failed -----------------------------------------------------------------------
351s 
351s | The 2 tests in this section failed because the new evaluations do not match 
351s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
351s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
351s 
351s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
351s > dat <- data.frame(x = 1:100, y = (1:100)^2)
351s > res <- fastlm(dat$x, dat$y)
351s 
351s # Our fast computations do not produce the same results as our
351s # original tests so they fail.  If you need more detail than the
351s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
351s #
351s # You should reject these tests by typing 'N' at the prompt since
351s # they are incorrect.
351s 
351s > res
351s intercept     slope       rsq 
351s -3.54e+13  7.01e+11  9.39e-01 
351s attr(,"class")
351s [1] "fastlm"
351s 
351s | Value mismatch: 
351s 
351s < .ref                            > .new                          
351s @@ 1,4 @@                         @@ 1,4 @@                       
351s   intercept     slope       rsq     intercept     slope       rsq 
351s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
351s   attr(,"class")                    attr(,"class")                
351s   [1] "fastlm"                      [1] "fastlm"                  
351s 
351s | State mismatch; see `.DIFF$state` for details.
351s 
351s unitizer> Q
351s 
351s | No changes recorded.
351s | unitizer unchanged.
351s 
351s | Summary of files in common directory 'unitizer':
351s | 
351s |                        Pass Fail
351s | *1.         fastlm1.R     2    2
351s |  2.         fastlm2.R     1    -
351s | *3. unitizer.fastlm.R     1    2
351s | ................................
351s |                           4    4
351s | Legend:
351s | * `unitizer` requires review
351s 
351s | Type number of unitizer to review, 'A' to review all that require review
351s 
351s unitizer> Q
351s 
351s > # incorrect selection
351s > unitizer:::read_line_set_vals(c("H", "4", "1", "Q", "Q"))
351s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
351s 
352s | Summary of files in common directory 'unitizer':
352s | 
352s |                        Pass Fail
352s | *1.         fastlm1.R     2    2
352s |  2.         fastlm2.R     1    -
352s | *3. unitizer.fastlm.R     1    2
352s | ................................
352s |                           4    4
352s | Legend:
352s | * `unitizer` requires review
352s 
352s | Type number of unitizer to review, 'A' to review all that require review
352s 
352s unitizer> H
352s 
352s | Available options:
352s | - 1:3: unitizer number to review
352s | - A: Review all `unitzers` that require review (*)
352s | - AA: Review all tests
352s | - RR: Re-run all tests
352s | - Q: quit
352s | 
352s | Pick a unitizer or an option ([A]ll, [Q]uit, [H]elp)?
352s 
352s unitizer> 4
352s | Type a number in `1:3` at the prompt
352s [1] 4
352s unitizer> 1
352s +------------------------------------------------------------------------------+
352s | unitizer for: unitizer/fastlm1.R                                             |
352s +------------------------------------------------------------------------------+
352s 
352s              Pass Fail
352s  <untitled>     2    2
352s ......................
352s                 2    2
352s 
352s - Failed -----------------------------------------------------------------------
352s 
352s | The 2 tests in this section failed because the new evaluations do not match 
352s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
352s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
352s 
352s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
352s > dat <- data.frame(x = 1:100, y = (1:100)^2)
352s > res <- fastlm(dat$x, dat$y)
352s 
352s # Our fast computations do not produce the same results as our
352s # original tests so they fail.  If you need more detail than the
352s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
352s #
352s # You should reject these tests by typing 'N' at the prompt since
352s # they are incorrect.
352s 
352s > res
352s intercept     slope       rsq 
352s -3.54e+13  7.01e+11  9.39e-01 
352s attr(,"class")
352s [1] "fastlm"
352s 
352s | Value mismatch: 
352s 
352s < .ref                            > .new                          
352s @@ 1,4 @@                         @@ 1,4 @@                       
352s   intercept     slope       rsq     intercept     slope       rsq 
352s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
352s   attr(,"class")                    attr(,"class")                
352s   [1] "fastlm"                      [1] "fastlm"                  
352s 
352s | State mismatch; see `.DIFF$state` for details.
352s 
352s unitizer> Q
352s 
352s | No changes recorded.
352s | unitizer unchanged.
352s 
352s | Summary of files in common directory 'unitizer':
352s | 
352s |                        Pass Fail
352s | *1.         fastlm1.R     2    2
352s |  2.         fastlm2.R     1    -
352s | *3. unitizer.fastlm.R     1    2
352s | ................................
352s |                           4    4
352s | Legend:
352s | * `unitizer` requires review
352s 
352s | Type number of unitizer to review, 'A' to review all that require review
352s 
352s unitizer> Q
352s 
352s > # simulate slow unitizer review
352s > old.opt <- options(unitizer.prompt.b4.quit.time = 0)
352s > unitizer:::read_line_set_vals(c("H", "1", "Q", "Q", "Q", "Y"))
352s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
352s 
352s | Summary of files in common directory 'unitizer':
352s | 
352s |                        Pass Fail
352s | *1.         fastlm1.R     2    2
352s |  2.         fastlm2.R     1    -
352s | *3. unitizer.fastlm.R     1    2
352s | ................................
352s |                           4    4
352s | Legend:
352s | * `unitizer` requires review
352s 
352s | Type number of unitizer to review, 'A' to review all that require review
352s 
352s unitizer> H
352s 
352s | Available options:
352s | - 1:3: unitizer number to review
352s | - A: Review all `unitzers` that require review (*)
352s | - AA: Review all tests
352s | - RR: Re-run all tests
352s | - Q: quit
352s | 
352s | Pick a unitizer or an option ([A]ll, [Q]uit, [H]elp)?
352s 
352s unitizer> 1
352s +------------------------------------------------------------------------------+
352s | unitizer for: unitizer/fastlm1.R                                             |
352s +------------------------------------------------------------------------------+
352s 
352s              Pass Fail
352s  <untitled>     2    2
352s ......................
352s                 2    2
352s 
352s - Failed -----------------------------------------------------------------------
352s 
352s | The 2 tests in this section failed because the new evaluations do not match 
352s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
352s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
352s 
352s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
352s > dat <- data.frame(x = 1:100, y = (1:100)^2)
352s > res <- fastlm(dat$x, dat$y)
352s 
352s # Our fast computations do not produce the same results as our
352s # original tests so they fail.  If you need more detail than the
352s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
352s #
352s # You should reject these tests by typing 'N' at the prompt since
352s # they are incorrect.
352s 
352s > res
352s intercept     slope       rsq 
352s -3.54e+13  7.01e+11  9.39e-01 
352s attr(,"class")
352s [1] "fastlm"
352s 
352s | Value mismatch: 
352s 
352s < .ref                            > .new                          
352s @@ 1,4 @@                         @@ 1,4 @@                       
352s   intercept     slope       rsq     intercept     slope       rsq 
352s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
352s   attr(,"class")                    attr(,"class")                
352s   [1] "fastlm"                      [1] "fastlm"                  
352s 
352s | State mismatch; see `.DIFF$state` for details.
352s 
352s unitizer> Q
352s 
352s = Finalize Unitizer ============================================================
352s 
352s | You have 2 unreviewed tests; press `B` to browse tests, `U` to go to first 
352s | unreviewed test.
352s 
352s | You made no changes to the unitizer so there is no need to update it.  While 
352s | unnecessary, you can force an update by typing O at the prompt.
352s 
352s | Exit unitizer ([Y]es, [P]rev, [B]rowse, [U]nreviewed, [R]erun, f[O]rce)?
352s 
352s unitizer> Q
352s 
352s | Changes discarded.
352s | unitizer unchanged.
352s 
352s | Summary of files in common directory 'unitizer':
352s | 
352s |                        Pass Fail
352s | *1.         fastlm1.R     2    2
352s |  2.         fastlm2.R     1    -
352s | *3. unitizer.fastlm.R     1    2
352s | ................................
352s |                           4    4
352s | Legend:
352s | * `unitizer` requires review
352s 
352s | Type number of unitizer to review, 'A' to review all that require review
352s 
352s unitizer> Q
352s 
352s | Are you sure you want to quit?
352s 
352s unitizer> Y
352s 
352s > options(old.opt)
352s > # Failures in non-interactive mode (note, can't run on the actual "fastlm.R"
352s > # file b/c we need to do this under a `try`):
352s > try(
352s +   unitize_dir(FLM.TEST.DIR, pattern = "unitize|fastlm2", interactive.mode = FALSE)
352s + )
352s 
352s Warning in check_call_stack() :
352s   It appears you are running unitizer inside an error handling function such as 
352s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
352s couraged as it may cause unpredictable behavior from unitizer in the event tests
352s produce conditions / errors.  We strongly recommend you re-run your tests 
352s outside of such handling functions.
353s Warning in history_capt(history, interactive.mode) :
353s   Unable to capture history in non-interactive mode.
353s | Summary of files in common directory 'unitizer':
353s | 
353s |                        Pass Fail
353s |  1.         fastlm2.R     1    -
353s | *2. unitizer.fastlm.R     1    2
353s | ................................
353s |                           2    2
353s | Legend:
353s | * `unitizer` requires review
353s 
353s +------------------------------------------------------------------------------+
353s | unitizer for: unitizer/unitizer.fastlm.R                                     |
353s +------------------------------------------------------------------------------+
353s 
353s              Pass Fail
353s  <untitled>     1    2
353s ......................
353s                 1    2
353s 
353s - Failed -----------------------------------------------------------------------
353s 
353s | The 2 tests in this section failed because the new evaluations do not match 
353s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
353s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
353s 
353s # Extra test file for internal tests; not for DEMO
353s 
353s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
353s > x <- 1:10
353s > y <- x^3
353s > res <- fastlm(x, y)
353s > get_slope(res)
353s [1] 717379
353s 
353s | Value mismatch: 
353s 
353s < .ref        > .new      
353s @@ 1 @@       @@ 1 @@     
353s < [1] 105     > [1] 717379
353s 
353s | State mismatch; see `.DIFF$state` for details.
353s 
353s > get_intercept(res)
353s [1] -3945281
353s 
353s | Value mismatch: 
353s 
353s < .ref          > .new        
353s @@ 1 @@         @@ 1 @@       
353s < [1] -277      > [1] -3945281
353s 
353s | State mismatch; see `.DIFF$state` for details.
353s 
353s | User input required to proceed, but we are in non-interactive mode.
353s 
353s | unitizer unchanged.
353s 
353s |   * Fail: get_slope(res)
353s |   * Fail: get_intercept(res)
353s | in 'unitizer/unitizer.fastlm.R'
353s 
353s | Newly evaluated tests do not match unitizer (Pass: 2, Fail: 2); see above for 
353s | more info, or run in interactive mode.
353s 
353s Error in unitize_core(test.files = test.files, store.ids = store.ids,  : 
353s   Cannot proceed in non-interactive mode.
353s > # review all that need review, but don't do anything
353s > unitizer:::read_line_set_vals(c("A", "Q", "Q", "Q"))
353s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
353s 
353s | Summary of files in common directory 'unitizer':
353s | 
353s |                        Pass Fail
353s | *1.         fastlm1.R     2    2
353s |  2.         fastlm2.R     1    -
353s | *3. unitizer.fastlm.R     1    2
353s | ................................
353s |                           4    4
353s | Legend:
353s | * `unitizer` requires review
353s 
353s | Type number of unitizer to review, 'A' to review all that require review
353s 
353s unitizer> A
353s 
353s +------------------------------------------------------------------------------+
353s | unitizer for: unitizer/fastlm1.R                                             |
353s +------------------------------------------------------------------------------+
353s 
353s              Pass Fail
353s  <untitled>     2    2
353s ......................
353s                 2    2
353s 
353s - Failed -----------------------------------------------------------------------
353s 
353s | The 2 tests in this section failed because the new evaluations do not match 
353s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
353s | [P]rev, [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
353s 
353s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
353s > dat <- data.frame(x = 1:100, y = (1:100)^2)
353s > res <- fastlm(dat$x, dat$y)
353s 
353s # Our fast computations do not produce the same results as our
353s # original tests so they fail.  If you need more detail than the
353s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
354s #
354s # You should reject these tests by typing 'N' at the prompt since
354s # they are incorrect.
354s 
354s > res
354s intercept     slope       rsq 
354s -3.54e+13  7.01e+11  9.39e-01 
354s attr(,"class")
354s [1] "fastlm"
354s 
354s | Value mismatch: 
354s 
354s < .ref                            > .new                          
354s @@ 1,4 @@                         @@ 1,4 @@                       
354s   intercept     slope       rsq     intercept     slope       rsq 
354s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
354s   attr(,"class")                    attr(,"class")                
354s   [1] "fastlm"                      [1] "fastlm"                  
354s 
354s | State mismatch; see `.DIFF$state` for details.
354s 
354s unitizer> Q
354s 
354s | No changes recorded.
354s | unitizer unchanged.
354s 
354s +------------------------------------------------------------------------------+
354s | unitizer for: unitizer/unitizer.fastlm.R                                     |
354s +------------------------------------------------------------------------------+
354s 
354s              Pass Fail
354s  <untitled>     1    2
354s ......................
354s                 1    2
354s 
354s - Failed -----------------------------------------------------------------------
354s 
354s | The 2 tests in this section failed because the new evaluations do not match 
354s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
354s | [P]rev, [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
354s 
354s # Extra test file for internal tests; not for DEMO
354s 
354s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
354s > x <- 1:10
354s > y <- x^3
354s > res <- fastlm(x, y)
354s > get_slope(res)
354s [1] 717379
354s 
354s | Value mismatch: 
354s 
354s < .ref        > .new      
354s @@ 1 @@       @@ 1 @@     
354s < [1] 105     > [1] 717379
354s 
354s | State mismatch; see `.DIFF$state` for details.
354s 
354s unitizer> Q
354s 
354s | No changes recorded.
354s | unitizer unchanged.
354s 
354s | Summary of files in common directory 'unitizer':
354s | 
354s |                        Pass Fail
354s | *1.         fastlm1.R     2    2
354s |  2.         fastlm2.R     1    -
354s | *3. unitizer.fastlm.R     1    2
354s | ................................
354s |                           4    4
354s | Legend:
354s | * `unitizer` requires review
354s 
354s | Type number of unitizer to review, 'A' to review all that require review
354s 
354s unitizer> Q
354s 
354s > # review all, but don't do anything
354s > unitizer:::read_line_set_vals(c("AA", "Q", "Q", "Q", "Q"))
354s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
354s 
354s | Summary of files in common directory 'unitizer':
354s | 
354s |                        Pass Fail
354s | *1.         fastlm1.R     2    2
354s |  2.         fastlm2.R     1    -
354s | *3. unitizer.fastlm.R     1    2
354s | ................................
354s |                           4    4
354s | Legend:
354s | * `unitizer` requires review
354s 
354s | Type number of unitizer to review, 'A' to review all that require review
354s 
354s unitizer> AA
354s 
354s +------------------------------------------------------------------------------+
354s | unitizer for: unitizer/fastlm1.R                                             |
354s +------------------------------------------------------------------------------+
354s 
354s              Pass Fail
354s  <untitled>     2    2
354s ......................
354s                 2    2
354s 
354s - Failed -----------------------------------------------------------------------
354s 
354s | The 2 tests in this section failed because the new evaluations do not match 
354s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
354s | [P]rev, [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
354s 
354s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
354s > dat <- data.frame(x = 1:100, y = (1:100)^2)
354s > res <- fastlm(dat$x, dat$y)
354s 
354s # Our fast computations do not produce the same results as our
354s # original tests so they fail.  If you need more detail than the
354s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
354s #
354s # You should reject these tests by typing 'N' at the prompt since
354s # they are incorrect.
354s 
354s > res
354s intercept     slope       rsq 
354s -3.54e+13  7.01e+11  9.39e-01 
354s attr(,"class")
354s [1] "fastlm"
354s 
354s | Value mismatch: 
354s 
354s < .ref                            > .new                          
354s @@ 1,4 @@                         @@ 1,4 @@                       
354s   intercept     slope       rsq     intercept     slope       rsq 
354s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
354s   attr(,"class")                    attr(,"class")                
354s   [1] "fastlm"                      [1] "fastlm"                  
354s 
354s | State mismatch; see `.DIFF$state` for details.
354s 
354s unitizer> Q
354s 
354s | No changes recorded.
354s | unitizer unchanged.
354s 
354s +------------------------------------------------------------------------------+
354s | unitizer for: unitizer/fastlm2.R                                             |
354s +------------------------------------------------------------------------------+
354s 
354s              Pass Fail
354s  <untitled>     1    -
354s ......................
354s                 1    -
354s 
354s   *1. x <- 1:10 .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .      -:-
354s   *2. y <- 1:10^3  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .      -:-
354s   *3. res <- summary(lm(y ~ x, data.frame(x = x, y = y))) .  .  .  .  .      -:-
354s   *4. intercept <- res$coefficients[1, 1]  .  .  .  .  .  .  .  .  .  .      -:-
354s   *5. slope <- res$coefficients[2, 1]   .  .  .  .  .  .  .  .  .  .  .      -:-
354s   *6. rsq <- res$r.squared  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .      -:-
354s    7. structure(c(intercept = intercept, slope = slope, rsq = rsq),...  Passed:-
354s 
354s | What test do you wish to review (input a test number, [U]nreviewed)?
354s 
354s unitizer> Q
354s 
354s | No changes recorded.
354s | unitizer unchanged.
354s 
354s +------------------------------------------------------------------------------+
354s | unitizer for: unitizer/unitizer.fastlm.R                                     |
354s +------------------------------------------------------------------------------+
354s 
354s              Pass Fail
354s  <untitled>     1    2
354s ......................
354s                 1    2
354s 
354s - Failed -----------------------------------------------------------------------
354s 
354s | The 2 tests in this section failed because the new evaluations do not match 
354s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
354s | [P]rev, [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
354s 
354s # Extra test file for internal tests; not for DEMO
354s 
354s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
354s > x <- 1:10
354s > y <- x^3
354s > res <- fastlm(x, y)
354s > get_slope(res)
354s [1] 717379
354s 
354s | Value mismatch: 
354s 
354s < .ref        > .new      
354s @@ 1 @@       @@ 1 @@     
354s < [1] 105     > [1] 717379
354s 
354s | State mismatch; see `.DIFF$state` for details.
354s 
354s unitizer> Q
354s 
354s | No changes recorded.
354s | unitizer unchanged.
354s 
354s | Summary of files in common directory 'unitizer':
354s | 
354s |                        Pass Fail
354s | *1.         fastlm1.R     2    2
354s |  2.         fastlm2.R     1    -
354s | *3. unitizer.fastlm.R     1    2
354s | ................................
354s |                           4    4
354s | Legend:
354s | * `unitizer` requires review
354s 
354s | Type number of unitizer to review, 'A' to review all that require review
354s 
354s unitizer> Q
354s 
354s > # review one, and Re-eval despite no change
354s > unitizer:::read_line_set_vals(c("1", "R", "Y", "Q", "Q"))
354s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
354s 
355s | Summary of files in common directory 'unitizer':
355s | 
355s |                        Pass Fail
355s | *1.         fastlm1.R     2    2
355s |  2.         fastlm2.R     1    -
355s | *3. unitizer.fastlm.R     1    2
355s | ................................
355s |                           4    4
355s | Legend:
355s | * `unitizer` requires review
355s 
355s | Type number of unitizer to review, 'A' to review all that require review
355s 
355s unitizer> 1
355s +------------------------------------------------------------------------------+
355s | unitizer for: unitizer/fastlm1.R                                             |
355s +------------------------------------------------------------------------------+
355s 
355s              Pass Fail
355s  <untitled>     2    2
355s ......................
355s                 2    2
355s 
355s - Failed -----------------------------------------------------------------------
355s 
355s | The 2 tests in this section failed because the new evaluations do not match 
355s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
355s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
355s 
355s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
355s > dat <- data.frame(x = 1:100, y = (1:100)^2)
355s > res <- fastlm(dat$x, dat$y)
355s 
355s # Our fast computations do not produce the same results as our
355s # original tests so they fail.  If you need more detail than the
355s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
355s #
355s # You should reject these tests by typing 'N' at the prompt since
355s # they are incorrect.
355s 
355s > res
355s intercept     slope       rsq 
355s -3.54e+13  7.01e+11  9.39e-01 
355s attr(,"class")
355s [1] "fastlm"
355s 
355s | Value mismatch: 
355s 
355s < .ref                            > .new                          
355s @@ 1,4 @@                         @@ 1,4 @@                       
355s   intercept     slope       rsq     intercept     slope       rsq 
355s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
355s   attr(,"class")                    attr(,"class")                
355s   [1] "fastlm"                      [1] "fastlm"                  
355s 
355s | State mismatch; see `.DIFF$state` for details.
355s 
355s unitizer> R
355s 
355s | Toggling re-run mode ON for this unitizer
355s 
355s = Finalize Unitizer ============================================================
355s 
355s | You have 2 unreviewed tests; press `B` to browse tests, `U` to go to first 
355s | unreviewed test.
355s 
355s | You made no changes to the unitizer so there is no need to update it.  While 
355s | unnecessary, you can force an update by typing O at the prompt.
355s 
355s | Re-run unitizer ([Y]es, [P]rev, [B]rowse, [U]nreviewed, [R]erun, f[O]rce)?
355s 
355s unitizer> Y
355s 
355s | unitizer unchanged.
355s 
355s +------------------------------------------------------------------------------+
355s | unitizer for: unitizer/fastlm1.R                                             |
355s +------------------------------------------------------------------------------+
355s 
355s              Pass Fail
355s  <untitled>     2    2
355s ......................
355s                 2    2
355s 
355s - Failed -----------------------------------------------------------------------
355s 
355s | The 2 tests in this section failed because the new evaluations do not match 
355s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
355s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
355s 
355s | Jumping to test #4 because that was the test under review when test re-run was
355s | requested.
355s 
355s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
355s > dat <- data.frame(x = 1:100, y = (1:100)^2)
355s > res <- fastlm(dat$x, dat$y)
355s 
355s # Our fast computations do not produce the same results as our
355s # original tests so they fail.  If you need more detail than the
355s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
355s #
355s # You should reject these tests by typing 'N' at the prompt since
355s # they are incorrect.
355s 
355s > res
355s intercept     slope       rsq 
355s -3.54e+13  7.01e+11  9.39e-01 
355s attr(,"class")
355s [1] "fastlm"
355s 
356s | Value mismatch: 
356s 
356s < .ref                            > .new                          
356s @@ 1,4 @@                         @@ 1,4 @@                       
356s   intercept     slope       rsq     intercept     slope       rsq 
356s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
356s   attr(,"class")                    attr(,"class")                
356s   [1] "fastlm"                      [1] "fastlm"                  
356s 
356s | State mismatch; see `.DIFF$state` for details.
356s 
356s unitizer> Q
356s 
356s | No changes recorded.
356s | unitizer unchanged.
356s 
356s | Summary of files in common directory 'unitizer':
356s | 
356s |                        Pass Fail
356s | *1.         fastlm1.R     2    2
356s |  2.         fastlm2.R     1    -
356s | *3. unitizer.fastlm.R     1    2
356s | ................................
356s |                           4    4
356s | Legend:
356s | * `unitizer` requires review
356s 
356s | Type number of unitizer to review, 'A' to review all that require review
356s 
356s unitizer> Q
356s 
356s > unitizer:::read_line_set_vals(c("1", "RR", "Y", "Q", "Q"))
356s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
356s 
356s | Summary of files in common directory 'unitizer':
356s | 
356s |                        Pass Fail
356s | *1.         fastlm1.R     2    2
356s |  2.         fastlm2.R     1    -
356s | *3. unitizer.fastlm.R     1    2
356s | ................................
356s |                           4    4
356s | Legend:
356s | * `unitizer` requires review
356s 
356s | Type number of unitizer to review, 'A' to review all that require review
356s 
356s unitizer> 1
356s +------------------------------------------------------------------------------+
356s | unitizer for: unitizer/fastlm1.R                                             |
356s +------------------------------------------------------------------------------+
356s 
356s              Pass Fail
356s  <untitled>     2    2
356s ......................
356s                 2    2
356s 
356s - Failed -----------------------------------------------------------------------
356s 
356s | The 2 tests in this section failed because the new evaluations do not match 
356s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
356s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
356s 
356s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
356s > dat <- data.frame(x = 1:100, y = (1:100)^2)
356s > res <- fastlm(dat$x, dat$y)
356s 
356s # Our fast computations do not produce the same results as our
356s # original tests so they fail.  If you need more detail than the
356s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
356s #
356s # You should reject these tests by typing 'N' at the prompt since
356s # they are incorrect.
356s 
356s > res
356s intercept     slope       rsq 
356s -3.54e+13  7.01e+11  9.39e-01 
356s attr(,"class")
356s [1] "fastlm"
356s 
356s | Value mismatch: 
356s 
356s < .ref                            > .new                          
356s @@ 1,4 @@                         @@ 1,4 @@                       
356s   intercept     slope       rsq     intercept     slope       rsq 
356s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
356s   attr(,"class")                    attr(,"class")                
356s   [1] "fastlm"                      [1] "fastlm"                  
356s 
356s | State mismatch; see `.DIFF$state` for details.
356s 
356s unitizer> RR
356s 
356s | Toggling re-run mode ON for all loaded unitizers
356s 
356s = Finalize Unitizer ============================================================
356s 
356s | You have 2 unreviewed tests; press `B` to browse tests, `U` to go to first 
356s | unreviewed test.
356s 
356s | You made no changes to the unitizer so there is no need to update it.  While 
356s | unnecessary, you can force an update by typing O at the prompt.
356s 
356s | Re-run all loaded unitizers ([Y]es, [P]rev, [B]rowse, [U]nreviewed, [R]erun, 
356s | f[O]rce)?
356s 
356s unitizer> Y
356s 
356s | unitizer unchanged.
356s 
357s | Summary of files in common directory 'unitizer':
357s | 
357s |                        Pass Fail
357s | *1.         fastlm1.R     2    2
357s |  2.         fastlm2.R     1    -
357s | *3. unitizer.fastlm.R     1    2
357s | ................................
357s |                           4    4
357s | Legend:
357s | * `unitizer` requires review
357s 
357s | Type number of unitizer to review, 'A' to review all that require review
357s 
357s unitizer> Q
357s 
357s > # Test force eval
357s > # first run, force update and accept
357s > # second run, R from dir summary doesn't set bookmarks
357s > unitizer:::read_line_set_vals(c("1", "O", "Q", "Y", "R", "1",
357s +     "Q", "Q"))
357s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
357s 
357s | Summary of files in common directory 'unitizer':
357s | 
357s |                        Pass Fail
357s | *1.         fastlm1.R     2    2
357s |  2.         fastlm2.R     1    -
357s | *3. unitizer.fastlm.R     1    2
357s | ................................
357s |                           4    4
357s | Legend:
357s | * `unitizer` requires review
357s 
357s | Type number of unitizer to review, 'A' to review all that require review
357s 
357s unitizer> 1
357s +------------------------------------------------------------------------------+
357s | unitizer for: unitizer/fastlm1.R                                             |
357s +------------------------------------------------------------------------------+
357s 
357s              Pass Fail
357s  <untitled>     2    2
357s ......................
357s                 2    2
357s 
357s - Failed -----------------------------------------------------------------------
357s 
357s | The 2 tests in this section failed because the new evaluations do not match 
357s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
357s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
357s 
357s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
357s > dat <- data.frame(x = 1:100, y = (1:100)^2)
357s > res <- fastlm(dat$x, dat$y)
357s 
357s # Our fast computations do not produce the same results as our
357s # original tests so they fail.  If you need more detail than the
357s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
357s #
357s # You should reject these tests by typing 'N' at the prompt since
357s # they are incorrect.
357s 
357s > res
357s intercept     slope       rsq 
357s -3.54e+13  7.01e+11  9.39e-01 
357s attr(,"class")
357s [1] "fastlm"
357s 
357s | Value mismatch: 
357s 
357s < .ref                            > .new                          
357s @@ 1,4 @@                         @@ 1,4 @@                       
357s   intercept     slope       rsq     intercept     slope       rsq 
357s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
357s   attr(,"class")                    attr(,"class")                
357s   [1] "fastlm"                      [1] "fastlm"                  
357s 
357s | State mismatch; see `.DIFF$state` for details.
357s 
357s unitizer> O
357s 
357s | Toggling force update mode ON
357s 
357s unitizer> Q
357s 
357s = Finalize Unitizer ============================================================
357s 
357s | You have 2 unreviewed tests; press `B` to browse tests, `U` to go to first 
357s | unreviewed test.
357s 
357s | Running in `force.update` mode so `unitizer` will be re-saved even though 
357s | there are no changes to record (see `?unitize` for details).
357s 
357s | You are about to update 'unitizer/fastlm1.unitizer' with re-evaluated but 
357s | otherwise unchanged tests.
357s 
357s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [U]nreviewed, [R]erun, 
357s | f[O]rce)?
357s 
357s unitizer> Y
357s 
357s | unitizer updated.
357s 
357s | Summary of files in common directory 'unitizer':
357s | 
357s |                        Pass Fail
357s | $1.         fastlm1.R     ?    ?
357s |  2.         fastlm2.R     1    -
357s | *3. unitizer.fastlm.R     1    2
357s | ................................
357s |                           ?    ?
357s | Legend:
357s | * `unitizer` requires review
357s | $ `unitizer` has been modified and needs to be re-run to recompute summary
357s 
357s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
357s | to re-run all updated
357s 
357s unitizer> R
357s 
357s | Summary of files in common directory 'unitizer':
357s | 
357s |                        Pass Fail
357s | *1.         fastlm1.R     2    2
357s |  2.         fastlm2.R     1    -
357s | *3. unitizer.fastlm.R     1    2
357s | ................................
357s |                           4    4
357s | Legend:
357s | * `unitizer` requires review
357s 
357s | Type number of unitizer to review, 'A' to review all that require review
357s 
357s unitizer> 1
357s +------------------------------------------------------------------------------+
357s | unitizer for: unitizer/fastlm1.R                                             |
357s +------------------------------------------------------------------------------+
357s 
357s              Pass Fail
357s  <untitled>     2    2
357s ......................
357s                 2    2
357s 
357s - Failed -----------------------------------------------------------------------
357s 
357s | The 2 tests in this section failed because the new evaluations do not match 
357s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
357s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
357s 
357s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
357s > dat <- data.frame(x = 1:100, y = (1:100)^2)
358s > res <- fastlm(dat$x, dat$y)
358s 
358s # Our fast computations do not produce the same results as our
358s # original tests so they fail.  If you need more detail than the
358s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
358s #
358s # You should reject these tests by typing 'N' at the prompt since
358s # they are incorrect.
358s 
358s > res
358s intercept     slope       rsq 
358s -3.54e+13  7.01e+11  9.39e-01 
358s attr(,"class")
358s [1] "fastlm"
358s 
358s | Value mismatch: 
358s 
358s < .ref                            > .new                          
358s @@ 1,4 @@                         @@ 1,4 @@                       
358s   intercept     slope       rsq     intercept     slope       rsq 
358s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
358s   attr(,"class")                    attr(,"class")                
358s   [1] "fastlm"                      [1] "fastlm"                  
358s 
358s | State mismatch; see `.DIFF$state` for details.
358s 
358s unitizer> Q
358s 
358s | No changes recorded.
358s | unitizer unchanged.
358s 
358s | Summary of files in common directory 'unitizer':
358s | 
358s |                        Pass Fail
358s | *1.         fastlm1.R     2    2
358s |  2.         fastlm2.R     1    -
358s | *3. unitizer.fastlm.R     1    2
358s | ................................
358s |                           4    4
358s | Legend:
358s | * `unitizer` requires review
358s 
358s | Type number of unitizer to review, 'A' to review all that require review
358s 
358s unitizer> Q
358s 
358s > # Variations on YY, YYY, and YYY
358s > unitizer:::read_line_set_vals(c("1", "YY", "Y", "Q", "Q"))
358s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
358s 
358s | Summary of files in common directory 'unitizer':
358s | 
358s |                        Pass Fail
358s | *1.         fastlm1.R     2    2
358s |  2.         fastlm2.R     1    -
358s | *3. unitizer.fastlm.R     1    2
358s | ................................
358s |                           4    4
358s | Legend:
358s | * `unitizer` requires review
358s 
358s | Type number of unitizer to review, 'A' to review all that require review
358s 
358s unitizer> 1
358s +------------------------------------------------------------------------------+
358s | unitizer for: unitizer/fastlm1.R                                             |
358s +------------------------------------------------------------------------------+
358s 
358s              Pass Fail
358s  <untitled>     2    2
358s ......................
358s                 2    2
358s 
358s - Failed -----------------------------------------------------------------------
358s 
358s | The 2 tests in this section failed because the new evaluations do not match 
358s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
358s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
358s 
358s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
358s > dat <- data.frame(x = 1:100, y = (1:100)^2)
358s > res <- fastlm(dat$x, dat$y)
358s 
358s # Our fast computations do not produce the same results as our
358s # original tests so they fail.  If you need more detail than the
358s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
358s #
358s # You should reject these tests by typing 'N' at the prompt since
358s # they are incorrect.
358s 
358s > res
358s intercept     slope       rsq 
358s -3.54e+13  7.01e+11  9.39e-01 
358s attr(,"class")
358s [1] "fastlm"
358s 
358s | Value mismatch: 
358s 
358s < .ref                            > .new                          
358s @@ 1,4 @@                         @@ 1,4 @@                       
358s   intercept     slope       rsq     intercept     slope       rsq 
358s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
358s   attr(,"class")                    attr(,"class")                
358s   [1] "fastlm"                      [1] "fastlm"                  
358s 
358s | State mismatch; see `.DIFF$state` for details.
358s 
358s unitizer> YY
358s 
358s   4. res .  .  .  .  .  Failed:-
358s   5. get_slope(res)  .  Failed:-
358s 
358s Choose 'Y' for the 2 tests shown above ([Y]es, [N]o)?
358s unitizer> Y
358s 
358s = Finalize Unitizer ============================================================
358s 
358s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
358s | - Replacing 2 out of 2 failed tests
358s 
358s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
358s 
358s unitizer> Q
358s 
358s | Changes discarded.
358s | unitizer unchanged.
358s 
358s | Summary of files in common directory 'unitizer':
358s | 
358s |                        Pass Fail
358s | *1.         fastlm1.R     2    2
358s |  2.         fastlm2.R     1    -
358s | *3. unitizer.fastlm.R     1    2
358s | ................................
358s |                           4    4
358s | Legend:
358s | * `unitizer` requires review
358s 
358s | Type number of unitizer to review, 'A' to review all that require review
358s 
358s unitizer> Q
358s 
358s > unitizer:::read_line_set_vals(c("1", "YYY", "Y", "Q", "Q"))
358s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
358s 
359s | Summary of files in common directory 'unitizer':
359s | 
359s |                        Pass Fail
359s | *1.         fastlm1.R     2    2
359s |  2.         fastlm2.R     1    -
359s | *3. unitizer.fastlm.R     1    2
359s | ................................
359s |                           4    4
359s | Legend:
359s | * `unitizer` requires review
359s 
359s | Type number of unitizer to review, 'A' to review all that require review
359s 
359s unitizer> 1
359s +------------------------------------------------------------------------------+
359s | unitizer for: unitizer/fastlm1.R                                             |
359s +------------------------------------------------------------------------------+
359s 
359s              Pass Fail
359s  <untitled>     2    2
359s ......................
359s                 2    2
359s 
359s - Failed -----------------------------------------------------------------------
359s 
359s | The 2 tests in this section failed because the new evaluations do not match 
359s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
359s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
359s 
359s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
359s > dat <- data.frame(x = 1:100, y = (1:100)^2)
359s > res <- fastlm(dat$x, dat$y)
359s 
359s # Our fast computations do not produce the same results as our
359s # original tests so they fail.  If you need more detail than the
359s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
359s #
359s # You should reject these tests by typing 'N' at the prompt since
359s # they are incorrect.
359s 
359s > res
359s intercept     slope       rsq 
359s -3.54e+13  7.01e+11  9.39e-01 
359s attr(,"class")
359s [1] "fastlm"
359s 
359s | Value mismatch: 
359s 
359s < .ref                            > .new                          
359s @@ 1,4 @@                         @@ 1,4 @@                       
359s   intercept     slope       rsq     intercept     slope       rsq 
359s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
359s   attr(,"class")                    attr(,"class")                
359s   [1] "fastlm"                      [1] "fastlm"                  
359s 
359s | State mismatch; see `.DIFF$state` for details.
359s 
359s unitizer> YYY
359s 
359s   4. res .  .  .  .  .  Failed:-
359s   5. get_slope(res)  .  Failed:-
359s 
359s Choose 'Y' for the 2 tests shown above ([Y]es, [N]o)?
359s unitizer> Y
359s 
359s = Finalize Unitizer ============================================================
359s 
359s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
359s | - Replacing 2 out of 2 failed tests
359s 
359s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
359s 
359s unitizer> Q
359s 
359s | Changes discarded.
359s | unitizer unchanged.
359s 
359s | Summary of files in common directory 'unitizer':
359s | 
359s |                        Pass Fail
359s | *1.         fastlm1.R     2    2
359s |  2.         fastlm2.R     1    -
359s | *3. unitizer.fastlm.R     1    2
359s | ................................
359s |                           4    4
359s | Legend:
359s | * `unitizer` requires review
359s 
359s | Type number of unitizer to review, 'A' to review all that require review
359s 
359s unitizer> Q
359s 
359s > unitizer:::read_line_set_vals(c("1", "YYYY", "Y", "Q", "Q"))
359s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
359s 
359s | Summary of files in common directory 'unitizer':
359s | 
359s |                        Pass Fail
359s | *1.         fastlm1.R     2    2
359s |  2.         fastlm2.R     1    -
359s | *3. unitizer.fastlm.R     1    2
359s | ................................
359s |                           4    4
359s | Legend:
359s | * `unitizer` requires review
359s 
359s | Type number of unitizer to review, 'A' to review all that require review
359s 
359s unitizer> 1
359s +------------------------------------------------------------------------------+
359s | unitizer for: unitizer/fastlm1.R                                             |
359s +------------------------------------------------------------------------------+
359s 
359s              Pass Fail
359s  <untitled>     2    2
359s ......................
359s                 2    2
359s 
359s - Failed -----------------------------------------------------------------------
359s 
359s | The 2 tests in this section failed because the new evaluations do not match 
359s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
359s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
359s 
359s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
359s > dat <- data.frame(x = 1:100, y = (1:100)^2)
359s > res <- fastlm(dat$x, dat$y)
359s 
359s # Our fast computations do not produce the same results as our
359s # original tests so they fail.  If you need more detail than the
359s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
359s #
359s # You should reject these tests by typing 'N' at the prompt since
359s # they are incorrect.
359s 
359s > res
359s intercept     slope       rsq 
359s -3.54e+13  7.01e+11  9.39e-01 
359s attr(,"class")
359s [1] "fastlm"
359s 
359s | Value mismatch: 
359s 
359s < .ref                            > .new                          
359s @@ 1,4 @@                         @@ 1,4 @@                       
359s   intercept     slope       rsq     intercept     slope       rsq 
359s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
359s   attr(,"class")                    attr(,"class")                
359s   [1] "fastlm"                      [1] "fastlm"                  
359s 
359s | State mismatch; see `.DIFF$state` for details.
359s 
359s unitizer> YYYY
359s 
359s   4. res .  .  .  .  .  Failed:-
359s   5. get_slope(res)  .  Failed:-
359s 
359s Choose 'Y' for the 2 tests shown above ([Y]es, [N]o)?
359s unitizer> Y
359s 
359s = Finalize Unitizer ============================================================
359s 
359s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
359s | - Replacing 2 out of 2 failed tests
359s 
359s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
359s 
359s unitizer> Q
359s 
359s | Changes discarded.
359s | unitizer unchanged.
359s 
359s | Summary of files in common directory 'unitizer':
359s | 
359s |                        Pass Fail
359s | *1.         fastlm1.R     2    2
359s |  2.         fastlm2.R     1    -
359s | *3. unitizer.fastlm.R     1    2
359s | ................................
359s |                           4    4
359s | Legend:
359s | * `unitizer` requires review
359s 
359s | Type number of unitizer to review, 'A' to review all that require review
359s 
359s unitizer> Q
359s 
359s > # review all, accepting all changes, and reevaluting everything; note that this
359s > # means we're accepting tests that are not correct
359s > unitizer:::read_line_set_vals(c("A", "Y", "Y", "Y", "Y", "Y", "Y", "RR"))
359s > unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
359s 
360s | Summary of files in common directory 'unitizer':
360s | 
360s |                        Pass Fail
360s | *1.         fastlm1.R     2    2
360s |  2.         fastlm2.R     1    -
360s | *3. unitizer.fastlm.R     1    2
360s | ................................
360s |                           4    4
360s | Legend:
360s | * `unitizer` requires review
360s 
360s | Type number of unitizer to review, 'A' to review all that require review
360s 
360s unitizer> A
360s 
360s +------------------------------------------------------------------------------+
360s | unitizer for: unitizer/fastlm1.R                                             |
360s +------------------------------------------------------------------------------+
360s 
360s              Pass Fail
360s  <untitled>     2    2
360s ......................
360s                 2    2
360s 
360s - Failed -----------------------------------------------------------------------
360s 
360s | The 2 tests in this section failed because the new evaluations do not match 
360s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
360s | [P]rev, [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
360s 
360s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
360s > dat <- data.frame(x = 1:100, y = (1:100)^2)
360s > res <- fastlm(dat$x, dat$y)
360s 
360s # Our fast computations do not produce the same results as our
360s # original tests so they fail.  If you need more detail than the
360s # provided diff you may use `.new`/`.NEW` or `.ref`/`.REF`.
360s #
360s # You should reject these tests by typing 'N' at the prompt since
360s # they are incorrect.
360s 
360s > res
360s intercept     slope       rsq 
360s -3.54e+13  7.01e+11  9.39e-01 
360s attr(,"class")
360s [1] "fastlm"
360s 
360s | Value mismatch: 
360s 
360s < .ref                            > .new                          
360s @@ 1,4 @@                         @@ 1,4 @@                       
360s   intercept     slope       rsq     intercept     slope       rsq 
360s < -1717.000   101.000     0.939   > -3.54e+13  7.01e+11  9.39e-01 
360s   attr(,"class")                    attr(,"class")                
360s   [1] "fastlm"                      [1] "fastlm"                  
360s 
360s | State mismatch; see `.DIFF$state` for details.
360s 
360s unitizer> Y
360s 
360s # This one is also incorrect; reject with 'N'
360s 
360s > get_slope(res)
360s [1] 7.01e+11
360s 
360s | Value mismatch: 
360s 
360s < .ref          > .new        
360s @@ 1 @@         @@ 1 @@       
360s < [1] 101       > [1] 7.01e+11
360s 
360s | State mismatch; see `.DIFF$state` for details.
360s 
360s unitizer> Y
360s 
360s = Finalize Unitizer ============================================================
360s 
360s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
360s | - Replacing 2 out of 2 failed tests
360s 
360s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, [QQ]uit All)?
360s 
360s unitizer> Y
360s 
360s | unitizer updated.
360s 
360s +------------------------------------------------------------------------------+
360s | unitizer for: unitizer/unitizer.fastlm.R                                     |
360s +------------------------------------------------------------------------------+
360s 
360s              Pass Fail
360s  <untitled>     1    2
360s ......................
360s                 1    2
360s 
360s - Failed -----------------------------------------------------------------------
360s 
360s | The 2 tests in this section failed because the new evaluations do not match 
360s | the reference values from the store. Overwrite with new results ([Y]es, [N]o, 
360s | [P]rev, [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
360s 
360s # Extra test file for internal tests; not for DEMO
360s 
360s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
360s > x <- 1:10
360s > y <- x^3
360s > res <- fastlm(x, y)
360s > get_slope(res)
360s [1] 717379
360s 
360s | Value mismatch: 
360s 
360s < .ref        > .new      
360s @@ 1 @@       @@ 1 @@     
360s < [1] 105     > [1] 717379
360s 
360s | State mismatch; see `.DIFF$state` for details.
360s 
360s unitizer> Y
360s 
360s > get_intercept(res)
360s [1] -3945281
360s 
360s | Value mismatch: 
360s 
360s < .ref          > .new        
360s @@ 1 @@         @@ 1 @@       
360s < [1] -277      > [1] -3945281
360s 
360s | State mismatch; see `.DIFF$state` for details.
360s 
360s unitizer> Y
360s 
360s = Finalize Unitizer ============================================================
360s 
360s | You will IRREVERSIBLY modify 'unitizer/unitizer.fastlm.unitizer' by:
360s | - Replacing 2 out of 2 failed tests
360s 
360s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, [QQ]uit All)?
360s 
360s unitizer> Y
360s 
360s | unitizer updated.
360s 
360s | Summary of files in common directory 'unitizer':
360s | 
360s |                        Pass Fail
360s | $1.         fastlm1.R     ?    ?
360s |  2.         fastlm2.R     1    -
360s | $3. unitizer.fastlm.R     ?    ?
360s | ................................
360s |                           ?    ?
360s | Legend:
360s | $ `unitizer` has been modified and needs to be re-run to recompute summary
360s 
360s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
360s | to re-run all updated
360s 
360s unitizer> RR
360s 
361s | Summary of files in common directory 'unitizer':
361s | 
361s |                        Pass Fail
361s |  1.         fastlm1.R     4    -
361s |  2.         fastlm2.R     1    -
361s |  3. unitizer.fastlm.R     3    -
361s | ................................
361s |                           8    -
361s 
361s | 8/8 tests passed; nothing to review.
361s 
361s > 
361s > # - "multi-sect" ---------------------------------------------------------------
361s > 
361s > # Upgrade again, and try with deleted tests and other things
361s > update_fastlm(FLM, version = "0.1.2")
361s > inst_pak(FLM)
362s > unitizer:::read_line_set_vals(c("3", "ref(res)", "Y", "Y", "B",
362s +     "1", "B", "U", "Y", "RR", "Y", "Q"))
362s > txt20 <- unitizer:::capture_output(unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE))
363s > txt20$output <- gsub("^<\\w+: .*?>", "", txt20$output)
363s > txt20
363s - Output -----------------------------------------------------------------------
363s 
363s 
363s | Summary of files in common directory 'unitizer':
363s | 
363s |                        Pass Fail  New  Del
363s | *1.         fastlm1.R     2    2    -    -
363s |  2.         fastlm2.R     1    -    -    -
363s | *3. unitizer.fastlm.R     1    1    1    1
363s | ..........................................
363s |                           4    3    1    1
363s | Legend:
363s | * `unitizer` requires review
363s 
363s | Type number of unitizer to review, 'A' to review all that require review
363s 
363s unitizer> 3
363s +------------------------------------------------------------------------------+
363s | unitizer for: unitizer/unitizer.fastlm.R                                     |
363s +------------------------------------------------------------------------------+
363s 
363s                  Pass Fail  New  Del
363s      <untitled>     -    -    -    1
363s     Basic Tests     -    1    -    -
363s  Advanced Tests     1    -    1    -
363s ....................................
363s                     1    1    1    1
363s 
363s = <untitled> ===================================================================
363s 
363s - Removed ----------------------------------------------------------------------
363s 
363s | The following test exists in the unitizer store but not in the new test 
363s | script. Remove test from store ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, 
363s | [Q]uit, [H]elp)?
363s 
363s > get_intercept(res)
363s [1] -3945281
363s 
363s unitizer> ref(res)
363s unitizer> Y
363s 
363s = Basic Tests ==================================================================
363s 
363s - Failed -----------------------------------------------------------------------
363s 
363s | The following test failed because the new evaluation does not match the 
363s | reference value from the store. Overwrite with new result ([Y]es, [N]o, 
363s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
363s 
363s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
363s > x <- 1:10
363s > y <- x^3
363s > res <- fastlm(x, y)
363s > get_slope(res)
363s [1] 105
363s 
363s | Value mismatch: 
363s 
363s < .ref        > .new      
363s @@ 1 @@       @@ 1 @@     
363s < [1] 717379  > [1] 105   
363s 
363s | State mismatch; see `.DIFF$state` for details.
363s 
363s unitizer> Y
363s 
363s = Advanced Tests ===============================================================
363s 
363s - New --------------------------------------------------------------------------
363s 
363s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
363s | [R]erun, [Q]uit, [H]elp)?
363s 
363s > 2 * get_slope(res) + get_intercept(res)
363s [1] -66.4
363s 
363s unitizer> B
363s 
363s = <untitled> ===================================================================
363s    8. get_intercept(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Removed:Y
363s = Basic Tests ==================================================================
363s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .         -:-
363s   *2. x <- 1:10 .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .         -:-
363s   *3. y <- x^3  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .         -:-
363s   *4. res <- fastlm(x, y)   .  .  .  .  .  .  .  .  .  .  .  .  .  .         -:-
363s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .    Failed:Y
363s = Advanced Tests ===============================================================
363s    6. 2 * get_slope(res) + get_intercept(res) .  .  .  .  .  .  .  .       New:-
363s    7. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .    Passed:-
363s 
363s | What test do you wish to review (input a test number, [U]nreviewed)?
363s 
363s unitizer> 1
363s 
363s = Basic Tests ==================================================================
363s 
363s - Failed -----------------------------------------------------------------------
363s 
363s | The following test failed because the new evaluation does not match the 
363s | reference value from the store. Overwrite with new result ([Y]es, [N]o, 
363s | [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
363s 
363s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
363s unitizer> B
363s 
363s = <untitled> ===================================================================
363s    8. get_intercept(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   Removed:Y
363s = Basic Tests ==================================================================
363s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .         -:-
363s   *2. x <- 1:10 .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .         -:-
363s   *3. y <- x^3  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .         -:-
363s   *4. res <- fastlm(x, y)   .  .  .  .  .  .  .  .  .  .  .  .  .  .         -:-
363s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .    Failed:Y
363s = Advanced Tests ===============================================================
363s    6. 2 * get_slope(res) + get_intercept(res) .  .  .  .  .  .  .  .       New:-
363s    7. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .    Passed:-
363s 
363s | What test do you wish to review (input a test number, [U]nreviewed)?
363s 
363s unitizer> U
363s 
363s = Advanced Tests ===============================================================
363s 
363s - New --------------------------------------------------------------------------
363s 
363s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
363s | [R]erun, [Q]uit, [H]elp)?
363s 
363s > 2 * get_slope(res) + get_intercept(res)
363s [1] -66.4
363s 
363s unitizer> Y
363s 
363s = Finalize Unitizer ============================================================
363s 
363s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
363s 
363s unitizer> RR
363s 
363s | Update unitizer and re-run all loaded unitizers ([Y]es, [N]o, [P]rev, [B]
363s | rowse, [R]erun)?
363s 
363s unitizer> Y
363s 
363s | Summary of files in common directory 'unitizer':
363s | 
363s |                        Pass Fail
363s | *1.         fastlm1.R     2    2
363s |  2.         fastlm2.R     1    -
363s |  3. unitizer.fastlm.R     3    -
363s | ................................
363s |                           6    2
363s | Legend:
363s | * `unitizer` requires review
363s 
363s | Type number of unitizer to review, 'A' to review all that require review
363s 
363s unitizer> Q
363s 
363s - Message ----------------------------------------------------------------------
363s 
363s `ref` is only active when there is an active secondary environment
363s | You selected a test that is not normally reviewed in this mode;
363s | as such, upon test completion, you will be brought back to this menu
363s | instead of being taken to the next reviewable test.
363s 
363s | You will IRREVERSIBLY modify 'unitizer/unitizer.fastlm.unitizer' by:
363s | - Replacing 1 out of 1 failed tests
363s | - Adding 1 out of 1 new tests
363s | - Removing 1 out of 1 removed tests
363s 
363s | Toggling re-run mode ON for all loaded unitizers
363s 
363s | You will IRREVERSIBLY modify 'unitizer/unitizer.fastlm.unitizer' by:
363s | - Replacing 1 out of 1 failed tests
363s | - Adding 1 out of 1 new tests
363s | - Removing 1 out of 1 removed tests
363s 
363s | unitizer updated.
363s 
363s > 
363s > # - "Load Fail" ----------------------------------------------------------------
363s > 
363s > # Purposefully mess up one of the unitizers to see if the load fail stuff works
363s > saveRDS(list(1, 2, 3), file.path(FLM.TEST.DIR, "fastlm1.unitizer",
363s +     "data.rds"))
363s > try(unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE))
363s 
363s Warning in check_call_stack() :
363s   It appears you are running unitizer inside an error handling function such as 
363s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
363s couraged as it may cause unpredictable behavior from unitizer in the event tests
363s produce conditions / errors.  We strongly recommend you re-run your tests 
363s outside of such handling functions.
363s | 
363s | The following unitizer could not be loaded:
363s | - unitizer/fastlm1.unitizer: `get_unitizer` error: Retrieved object is not a 
363s |   unitizer store
363s 
363s Error in load_unitizers(store.ids[active], test.files[active], par.frame = util.frame,  : 
363s   Cannot proceed with invalid or out of date unitizers.  You must either fix or remove them.
363s > unitizer:::read_line_set_vals(NULL)
363s > 
363s PASS
363s Begin testing t-utz2.R
363s 
363s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
363s Copyright (C) 2024 The R Foundation for Statistical Computing
363s Platform: arm-unknown-linux-gnueabihf (32-bit)
363s 
363s R is free software and comes with ABSOLUTELY NO WARRANTY.
363s You are welcome to redistribute it under certain conditions.
363s Type 'license()' or 'licence()' for distribution details.
363s 
363s R is a collaborative project with many contributors.
363s Type 'contributors()' for more information and
363s 'citation()' on how to cite R or R packages in publications.
363s 
363s Type 'demo()' for some demos, 'help()' for on-line help, or
363s 'help.start()' for an HTML browser interface to help.
363s Type 'q()' to quit R.
363s 
363s > # Overflow tests from testthat.unitize.R
363s > 
363s > source(file.path("_helper", "init.R"))
364s > source(file.path("_helper", "pkgs.R"))
364s Install Packages
367s Setup Demos
367s > 
367s > library(unitizer)
367s > 
367s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
367s > # - "unreviewed variations" ----------------------------------------------------
367s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
367s > 
367s > # Test unreviewed
367s > # Accept one and go to unreviewed
367s > # Accept one more and browse and go to unreviewed
367s > # Accept two remaining and confirm no unreviewed
367s > # No unreviewed tests
367s > unitizer:::read_line_set_vals(
367s +   c("Y", "Q", "U", "Y", "B", "U", "Y", "Y", "U", "B", "U", "Q")
367s + )
367s > out <- unitizer:::capture_output(unitize(FLM.TEST.FILE, interactive.mode = TRUE))
369s > unitizer:::clean_eval_exp(out)
369s - Output -----------------------------------------------------------------------
369s 
369s 
369s +------------------------------------------------------------------------------+
369s | unitizer for: unitizer/fastlm1.R                                             |
369s +------------------------------------------------------------------------------+
369s 
369s              Pass Fail  New
369s  <untitled>     -    -    4
369s ...........................
369s                 -    -    4
369s 
369s - New --------------------------------------------------------------------------
369s 
369s | The 4 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
369s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
369s 
369s # Assignments and calls to `library` are not considered tests by
369s # `unitizer` so you will not need to review them
369s 
369s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
369s > dat <- data.frame(x = 1:100, y = (1:100)^2)
369s > res <- fastlm(dat$x, dat$y)
369s 
369s # The `unitizer>` prompt is like the standard R prompt. You may
369s # enter expressions such as `lm(y ~ x, dat)$coefficients`, or
369s # `str(res)`.
369s #
369s # Once you are done reviewing, you need to tell `unitizer` you
369s # accept the test by typing 'Y' at the prompt.  Enter 'H' for help.
369s 
369s > res
369s intercept     slope       rsq 
369s -1717.000   101.000     0.939 
369s attr(,"class")
369s [1] "fastlm"
369s 
369s unitizer> Y
369s 
369s # There are three more tests to review; accept them with 'Y'
369s 
369s > get_slope(res)
369s [1] 101
369s 
369s unitizer> Q
369s 
369s = Finalize Unitizer ============================================================
369s 
369s | You have 3 unreviewed tests; press `B` to browse tests, `U` to go to first 
369s | unreviewed test.
369s 
369s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [U]nreviewed, [R]erun)?
369s 
369s unitizer> U
369s 
369s # There are three more tests to review; accept them with 'Y'
369s 
369s > get_slope(res)
369s [1] 101
369s 
369s unitizer> Y
369s 
369s > get_rsq(res)
369s [1] 0.939
369s 
369s unitizer> B
369s 
369s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .     -:-
369s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .     -:-
369s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .     -:-
369s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:Y
369s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:Y
369s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:-
369s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:-
369s 
369s | What test do you wish to review (input a test number, [U]nreviewed)?
369s 
369s unitizer> U
369s 
369s - New --------------------------------------------------------------------------
369s 
369s | The 4 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
369s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
369s 
369s > get_rsq(res)
369s [1] 0.939
369s 
369s unitizer> Y
369s 
369s # This last test is expected to cause an error; press 'Y' to
369s # accept it so future checks can confirm the same error persists
369s 
369s > fastlm(1:100, 1:10)
369s 
369s unitizer> Y
369s 
369s = Finalize Unitizer ============================================================
369s 
369s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
369s 
369s unitizer> U
369s 
369s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun, [Q]uit, [H]elp)?
369s 
369s unitizer> B
369s 
369s   *1. library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc")) .     -:-
369s   *2. dat <- data.frame(x = 1:100, y = (1:100)^2)   .  .  .  .  .  .     -:-
369s   *3. res <- fastlm(dat$x, dat$y) .  .  .  .  .  .  .  .  .  .  .  .     -:-
369s    4. res .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:Y
369s    5. get_slope(res)  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:Y
369s    6. get_rsq(res) .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:Y
369s    7. fastlm(1:100, 1:10)   .  .  .  .  .  .  .  .  .  .  .  .  .  .   New:Y
369s 
369s | What test do you wish to review (input a test number, [U]nreviewed)?
369s 
369s unitizer> U
369s 
369s = Finalize Unitizer ============================================================
369s 
369s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
369s 
369s unitizer> Q
369s 
369s | unitizer unchanged.
369s 
369s - Message ----------------------------------------------------------------------
369s 
369s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
369s | - Adding 1 out of 4 new tests
369s 
369s Error in fastlm(1:100, 1:10) : 
369s   Arguments `x` and `y` must be the same length.
369s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
369s | - Adding 4 out of 4 new tests
369s 
369s Error in : object 'U' not found
369s | No unreviewed tests.
369s 
369s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
369s | - Adding 4 out of 4 new tests
369s 
369s | Changes discarded.
369s > 
369s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
369s > # - "Re-eval" ------------------------------------------------------------------
369s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
369s > 
369s > # Test re-eval
369s > # Re-eval and jump back to file 1
369s > # Quit from file 1 and back to main menu
369s > # Accept one test in file 2 and quit
369s > # Go to file 3, accept one, and Re-eval all
369s > 
369s > unitizer:::read_line_set_vals(
369s +   c("1", "Y", "R", "Y", "Q", "2", "Y", "Y", "3", "Y", "RR", "Y", "Q", "Q")
369s + )
369s > untz1 <- unitize_dir(FLM.TEST.DIR, interactive.mode = TRUE)
369s 
369s | Summary of files in common directory 'unitizer':
369s | 
369s |                        Pass Fail  New
369s | *1.         fastlm1.R     -    -    4
369s | *2.         fastlm2.R     -    -    1
369s | *3. unitizer.fastlm.R     -    -    3
369s | .....................................
369s |                           -    -    8
369s | Legend:
369s | * `unitizer` requires review
369s 
369s | Type number of unitizer to review, 'A' to review all that require review
369s 
369s unitizer> 1
369s +------------------------------------------------------------------------------+
369s | unitizer for: unitizer/fastlm1.R                                             |
369s +------------------------------------------------------------------------------+
369s 
369s              Pass Fail  New
369s  <untitled>     -    -    4
369s ...........................
369s                 -    -    4
369s 
369s - New --------------------------------------------------------------------------
369s 
369s | The 4 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
369s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
369s 
369s # Assignments and calls to `library` are not considered tests by
369s # `unitizer` so you will not need to review them
369s 
369s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
369s > dat <- data.frame(x = 1:100, y = (1:100)^2)
369s > res <- fastlm(dat$x, dat$y)
369s 
369s # The `unitizer>` prompt is like the standard R prompt. You may
369s # enter expressions such as `lm(y ~ x, dat)$coefficients`, or
369s # `str(res)`.
369s #
369s # Once you are done reviewing, you need to tell `unitizer` you
369s # accept the test by typing 'Y' at the prompt.  Enter 'H' for help.
369s 
369s > res
369s intercept     slope       rsq 
369s -1717.000   101.000     0.939 
369s attr(,"class")
369s [1] "fastlm"
369s 
369s unitizer> Y
369s 
369s # There are three more tests to review; accept them with 'Y'
369s 
369s > get_slope(res)
369s [1] 101
369s 
369s unitizer> R
370s 
370s | Toggling re-run mode ON for this unitizer
370s 
370s = Finalize Unitizer ============================================================
370s 
370s | You have 3 unreviewed tests; press `B` to browse tests, `U` to go to first 
370s | unreviewed test.
370s 
370s | You will IRREVERSIBLY modify 'unitizer/fastlm1.unitizer' by:
370s | - Adding 1 out of 4 new tests
370s 
370s | Update unitizer and re-run unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [U]
370s | nreviewed, [R]erun)?
370s 
370s unitizer> Y
370s 
370s | unitizer updated.
370s 
370s +------------------------------------------------------------------------------+
370s | unitizer for: unitizer/fastlm1.R                                             |
370s +------------------------------------------------------------------------------+
370s 
370s              Pass Fail  New
370s  <untitled>     1    -    3
370s ...........................
370s                 1    -    3
370s 
370s - New --------------------------------------------------------------------------
370s 
370s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
370s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
370s 
370s | Jumping to test #5 because that was the test under review when test re-run was
370s | requested.
370s 
370s # There are three more tests to review; accept them with 'Y'
370s 
370s > get_slope(res)
370s [1] 101
370s 
370s unitizer> Q
370s 
370s | No changes recorded.
370s | unitizer unchanged.
370s 
370s | Summary of files in common directory 'unitizer':
370s | 
370s |                        Pass Fail  New
370s | *1.         fastlm1.R     1    -    3
370s | *2.         fastlm2.R     -    -    1
370s | *3. unitizer.fastlm.R     -    -    3
370s | .....................................
370s |                           1    -    7
370s | Legend:
370s | * `unitizer` requires review
370s 
370s | Type number of unitizer to review, 'A' to review all that require review
370s 
370s unitizer> 2
370s +------------------------------------------------------------------------------+
370s | unitizer for: unitizer/fastlm2.R                                             |
370s +------------------------------------------------------------------------------+
370s 
370s              Pass Fail  New
370s  <untitled>     -    -    1
370s ...........................
370s                 -    -    1
370s 
370s - New --------------------------------------------------------------------------
370s 
370s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
370s | [R]erun, [Q]uit, [H]elp)?
370s 
370s # For internal tests only; not for demo
370s 
370s > x <- 1:10
370s > y <- 1:10^3
370s > res <- summary(lm(y ~ x, data.frame(x = x, y = y)))
370s > intercept <- res$coefficients[1, 1]
370s > slope <- res$coefficients[2, 1]
370s > rsq <- res$r.squared
370s > structure(c(intercept = intercept, slope = slope, rsq = rsq), 
370s +     class = "fastlm")
370s intercept     slope       rsq 
370s  4.95e+02  1.00e+00  9.90e-05 
370s attr(,"class")
370s [1] "fastlm"
370s 
370s unitizer> Y
370s 
370s = Finalize Unitizer ============================================================
370s 
370s | You will IRREVERSIBLY modify 'unitizer/fastlm2.unitizer' by:
370s | - Adding 1 out of 1 new tests
370s 
370s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
370s 
370s unitizer> Y
370s 
370s | unitizer updated.
370s 
370s | Summary of files in common directory 'unitizer':
370s | 
370s |                        Pass Fail  New
370s | *1.         fastlm1.R     1    -    3
370s | $2.         fastlm2.R     ?    ?    ?
370s | *3. unitizer.fastlm.R     -    -    3
370s | .....................................
370s |                           ?    ?    ?
370s | Legend:
370s | * `unitizer` requires review
370s | $ `unitizer` has been modified and needs to be re-run to recompute summary
370s 
370s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
370s | to re-run all updated
370s 
370s unitizer> 3
370s +------------------------------------------------------------------------------+
370s | unitizer for: unitizer/unitizer.fastlm.R                                     |
370s +------------------------------------------------------------------------------+
370s 
370s              Pass Fail  New
370s  <untitled>     -    -    3
370s ...........................
370s                 -    -    3
370s 
370s - New --------------------------------------------------------------------------
370s 
370s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
370s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
370s 
370s # Extra test file for internal tests; not for DEMO
370s 
370s > library(utzflm, lib.loc = getOption("unitizer.tmp.lib.loc"))
370s > x <- 1:10
370s > y <- x^3
370s > res <- fastlm(x, y)
370s > get_slope(res)
370s [1] 105
370s 
370s unitizer> Y
370s 
370s > get_rsq(res)
370s [1] 0.862
370s 
370s unitizer> RR
370s 
370s | Toggling re-run mode ON for all loaded unitizers
370s 
370s = Finalize Unitizer ============================================================
370s 
370s | You have 2 unreviewed tests; press `B` to browse tests, `U` to go to first 
370s | unreviewed test.
370s 
370s | You will IRREVERSIBLY modify 'unitizer/unitizer.fastlm.unitizer' by:
370s | - Adding 1 out of 3 new tests
370s 
370s | Update unitizer and re-run all loaded unitizers ([Y]es, [N]o, [P]rev, [B]
370s | rowse, [U]nreviewed, [R]erun)?
370s 
370s unitizer> Y
370s 
370s | unitizer updated.
370s 
371s | Summary of files in common directory 'unitizer':
371s | 
371s |                        Pass Fail  New
371s | *1.         fastlm1.R     1    -    3
371s |  2.         fastlm2.R     1    -    -
371s | *3. unitizer.fastlm.R     1    -    2
371s | .....................................
371s |                           3    -    5
371s | Legend:
371s | * `unitizer` requires review
371s 
371s | Type number of unitizer to review, 'A' to review all that require review
371s 
371s unitizer> Q
371s 
371s > print(untz1)
371s Summary of tests (accept/total):
371s 
371s  id         test.file       New    Passed    Totals
371s   1         fastlm1.R       0/3       1/1       1/4 $
371s   2         fastlm2.R       0/0       1/1       1/1 $
371s   3 unitizer.fastlm.R       0/2       1/1       1/3 $
371s -----------------------------------------------------
371s   0            Totals       0/5       3/3       3/8
371s 
371s $ unitizer was saved in prior evaluation
371s 
371s Test files in common directory 'tests/unitizer'
371s > # remove temp file names and display
371s > invisible(lapply(untz1, function(x) {print(x); cat('\n')}))
371s Test File: tests/unitizer/fastlm1.R
371s Store ID: tests/unitizer/fastlm1.unitizer
371s 
371s   id                           call ignored status user reviewed
371s 1  4 library(utzflm, lib.loc = g...       * Passed    Y    FALSE
371s 2  5 dat <- data.frame(x = 1:100...       * Passed    Y    FALSE
371s 3  6    res <- fastlm(dat$x, dat$y)       * Passed    Y    FALSE
371s 4  7                            res         Passed    Y    FALSE
371s 5  1                 get_slope(res)            New    N    FALSE
371s 6  2                   get_rsq(res)            New    N    FALSE
371s 7  3            fastlm(1:100, 1:10)            New    N    FALSE
371s 
371s You chose NOT to save these changes to the unitizer store
371s 
371s Test File: tests/unitizer/fastlm2.R
371s Store ID: tests/unitizer/fastlm2.unitizer
371s 
371s   id                           call ignored status user reviewed
371s 1  1                      x <- 1:10       * Passed    Y    FALSE
371s 2  2                    y <- 1:10^3       * Passed    Y    FALSE
371s 3  3 res <- summary(lm(y ~ x, da...       * Passed    Y    FALSE
371s 4  4 intercept <- res$coefficien...       * Passed    Y    FALSE
371s 5  5 slope <- res$coefficients[2...       * Passed    Y    FALSE
371s 6  6           rsq <- res$r.squared       * Passed    Y    FALSE
371s 7  7 structure(c(intercept = int...         Passed    Y    FALSE
371s 
371s You chose NOT to save these changes to the unitizer store
371s 
371s Test File: tests/unitizer/unitizer.fastlm.R
371s Store ID: tests/unitizer/unitizer.fastlm.unitizer
371s 
371s   id                           call ignored status user reviewed
371s 1  3 library(utzflm, lib.loc = g...       * Passed    Y    FALSE
371s 2  4                      x <- 1:10       * Passed    Y    FALSE
371s 3  5                       y <- x^3       * Passed    Y    FALSE
371s 4  6            res <- fastlm(x, y)       * Passed    Y    FALSE
371s 5  7                 get_slope(res)         Passed    Y    FALSE
371s 6  1                   get_rsq(res)            New    N    FALSE
371s 7  2             get_intercept(res)            New    N    FALSE
371s 
371s You chose NOT to save these changes to the unitizer store
371s 
371s > 
371s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
371s > # - "Section Extra" ------------------------------------------------------------
371s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
371s > 
371s > # Make sure that deleted items from a section are still marked from that
371s > # section upgrade to version two to use the files that are set up for that
371s > # there; notice update_fastlm_*extra*
371s > # Re-set by dropping unitizers
371s > 
371s > unlink(list.dirs(FLM.TEST.DIR, recursive = FALSE), recursive = TRUE)
371s > unitizer:::update_fastlm_extra(FLM)
371s > inst_pak(FLM)
372s > test.file.1 <- file.path(FLM.TEST.DIR, "unitizer.fastlm.R")
372s > test.file.2 <- file.path(FLM.TEST.DIR, "unitizer.fastlm2.R")
372s > test.store <- file.path(FLM.TEST.DIR, "store2.unitizer")
372s > # First auto accept all initial tests, and then re-run with second version to
372s > # make sure deleted tests are where we think they should be
372s > out.1 <-
372s +   unitizer:::capture_output(unitize(test.file.1, test.store, auto.accept = "new"))
372s > unitizer:::read_line_set_vals(c("B", "Q"))
372s > out.2 <- unitizer:::capture_output(
372s +   untz.2 <- unitize(test.file.2, test.store, interactive.mode = TRUE)
372s + )
373s > attributes(untz.2) <- NULL
373s > untz.2
373s [[1]]
373s [1] 1 2 3 4 5 6 7
373s 
373s [[2]]
373s [1] "library(utzflm, lib.loc = getOption(\"unitizer.tmp.lib.loc\"))"
373s [2] "x <- 1:10"                                                     
373s [3] "y <- x^2"                                                      
373s [4] "res <- fastlm(x, y)"                                           
373s [5] "get_slope(res)"                                                
373s [6] "get_rsq(res)"                                                  
373s [7] "2 * get_slope(res) + get_intercept(res)"                       
373s 
373s [[3]]
373s [1] "Basic Tests"    "Basic Tests"    "Basic Tests"    "Basic Tests"   
373s [5] "Basic Tests"    "Advanced Tests" "Advanced Tests"
373s 
373s [[4]]
373s [1]  TRUE  TRUE  TRUE  TRUE FALSE FALSE FALSE
373s 
373s [[5]]
373s [1] Failed  Failed  Failed  Failed  Failed  Failed  Removed
373s Levels: New Passed Failed Removed Corrupted
373s 
373s [[6]]
373s [1] N N N N N N N
373s Levels: Y N
373s 
373s [[7]]
373s [1] FALSE FALSE FALSE FALSE FALSE FALSE FALSE
373s 
373s > 
373s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
373s > # - "warning when comp funs produce output" ------------------------------------
373s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
373s > 
373s > # Sections with comp funs that output to stdout/stderr
373s > temp.loc <- tempfile()
373s > dir.create(temp.loc)
373s > file.copy(file.path(START.DIR, "_helper", "unitizers", "sects.R"), temp.loc)
373s [1] TRUE
373s > f.sec <- file.path(temp.loc, "sects.R")
373s > odir <- setwd(temp.loc)
373s > out <- unitizer:::capture_output(
373s +   unitize(f.sec, auto.accept = "new", interactive.mode = FALSE
373s + ) )
373s > 
373s > unitize(f.sec, interactive.mode = FALSE)
373s 
373s Warning in close_and_clear(e1@global$cons) :
373s   Test comparison functions appear to have produced output, which should not happen (see `?unitizer_sect` for more details).  If you did not provide custom testing functions, contact maintainer.  First 50 lines follow:
373s I'm outputting to stdout
373s I'm outputting to stderr
373s I'm outputting to both 1
373s I'm outputting to both 2
373s 
373s Warning in history_capt(history, interactive.mode) :
373s   Unable to capture history in non-interactive mode.
373s | 3/3 tests passed; nothing to review.
373s 
373s > setwd(odir)
373s > unlink(temp.loc, recursive = TRUE)
373s > 
373s > # - "Corner Case Files" --------------------------------------------------------
373s > 
373s > # Corner case files
373s > # empty
373s > temp.empty <- paste0(tempfile(), "-empty.R")
373s > cat("\n", file = temp.empty)
373s > empty.capt <- unitizer:::capture_output(unitize(temp.empty, force = TRUE))
373s > # File, but does not end in .R
373s > temp.bad <- paste0(tempfile())
373s > 
373s > cat("\n", file = temp.bad)
373s > badname.capt <- unitizer:::capture_output(try(unitize(temp.bad)))
373s > any(grepl("`get_unitizer` error", out$message))
373s [1] FALSE
373s > 
373s > any(grepl("Empty unitizer", empty.capt$output))
373s [1] TRUE
373s > any(grepl("No valid unitizers available", badname.capt$message))
373s [1] FALSE
373s > unlink(c(temp.empty, temp.bad))
373s > 
373s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
373s > # - "Re-eval change" -----------------------------------------------------------
373s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
373s > 
373s > # re-eval reeval with a modified file
373s > temp.reeval.base <- paste0(tempfile(), "-reeval")
373s > temp.reeval <- paste0(temp.reeval.base, ".R")
373s > temp.reeval.utz <- paste0(temp.reeval.base, ".unitizer")
373s > cat("1 + 1\n2 + 2\n", file = temp.reeval)
373s > # force re-review
373s > unitizer:::read_line_set_vals(c("Y", "P", "Y", "cat(\"1 + 1\n2 + 3\n\", file=temp.reeval)",
373s +     "R", "Y", "Q"))
373s > # state = environment() so we can access variables from this local
373s > reeval.capt <- unitizer:::capture_output(unitize(temp.reeval,
373s +     state = environment(), interactive.mode = TRUE))
373s > unlink(c(temp.reeval, temp.reeval.utz), recursive = TRUE)
373s > 
373s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
373s > # - "Condition fail" -----------------------------------------------------------
373s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
373s > 
373s > # Fail test with conditions
373s > temp.cond.base <- paste0(tempfile(), "-cond")
373s > temp.cond <- paste0(tempfile(), ".R")
373s > temp.cond.utz <- paste0(tempfile(), ".unitizer")
373s > cond.message <- "hello world"
373s > cat("warning(cond.message)", file = temp.cond)
373s > unitizer:::read_line_set_vals(c("Y", "Y"))
373s > # state = environment() so we can access variables from this local
373s > unitizer:::capture_output(
373s +   unitize(temp.cond, state = environment(), interactive.mode = TRUE)
373s + )
374s > cond.message <- "goodbye world"
374s > unitizer:::read_line_set_vals("Q")
374s > cond.capt <-
374s + unitizer:::capture_output(
374s +   unitize(temp.cond, state = environment(), interactive.mode = TRUE)
374s + )
374s > sum(grepl("Conditions mismatch", cond.capt$output)) == 1L
374s [1] TRUE
374s > unlink(c(temp.cond, temp.cond.utz), recursive = TRUE)
374s > 
374s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
374s > # - "Force" --------------------------------------------------------------------
374s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
374s > #
374s > # Toggle force update, in order for this to work we need to create a situation
374s > # where in a `unitize_dir`, one file passes, the other doesn't, and we review
374s > # the file that passes.  Otherwise the only other way to do it is to set force
374s > # from the beginning, but that ruins the toggle effect.  One possible issue
374s > # here is that we don't have a great way to check the file actually changed.
374s > 
374s > temp.forceup.base.dir <- tempfile()
374s > dir.create(temp.forceup.base.dir)
374s > temp.forceup.1 <- file.path(temp.forceup.base.dir, "force1.R")
374s > temp.forceup.2 <- file.path(temp.forceup.base.dir, "force2.R")
374s > cat("force.var\n", file = temp.forceup.1)
374s > cat("4 + 1\n", file = temp.forceup.2)
374s > force.var <- 1
374s > unitizer:::capture_output({
374s +   unitize(temp.forceup.1, auto.accept = "new", state = environment())
374s +   unitize(temp.forceup.2, auto.accept = "new", state = environment())
374s + })
374s > force.var <- 2
374s > unitizer:::read_line_set_vals(c("2", "1", "Y", "O", "Q", "Q"))
374s > force.capt <- unitizer:::capture_output(unitize_dir(temp.forceup.base.dir,
374s +     state = environment(), interactive.mode = TRUE))
374s > unlink(temp.forceup.base.dir, recursive = TRUE)
374s > sum(grepl("Toggling force update mode ON", force.capt$message)) ==
374s +     1L
374s [1] TRUE
374s > sum(grepl("You are about to .* with re-evaluated", force.capt$message)) ==
374s +     1L
374s [1] TRUE
374s > 
374s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
374s > # - "Compare Funs" -------------------------------------------------------------
374s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
374s > 
374s > # Bad comparison functions
374s > temp.bad.comp <- paste0(tempfile(), ".R")
374s > cat("\n  unitizer_sect(\n    'bad comp', {1 + 1; 2 + 2},\n    compare=function(x, y) list('failed', 'comparison')\n  )\n",
374s +     file = temp.bad.comp)
374s > unitizer:::capture_output(unitize(temp.bad.comp, auto.accept = "new"))
374s > unitizer:::read_line_set_vals(c("Q"))
374s > bad.comp.capt <- unitizer:::capture_output(unitize(temp.bad.comp,
374s +     interactive.mode = TRUE))
375s > unlink(temp.bad.comp)
375s > 
375s > sum(grepl("Unable to compare value", bad.comp.capt$message)) == 1L
375s [1] TRUE
375s > sum(grepl("Corrupted", bad.comp.capt$output)) >= 1L
375s [1] TRUE
375s > 
375s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
375s > # - "bad map" ------------------------------------------------------------------
375s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
375s > 
375s > # Bad store mapping functions
375s > 
375s > try(unitize_dir(FLM.TEST.DIR, store.ids = function(x) stop("Bad store map fun")))
375s 
375s Error in FUN(X[[i]], ...) : Bad store map fun
375s Error in unitize_dir(FLM.TEST.DIR, store.ids = function(x) stop("Bad store map fun")) : 
375s   Argument `store.ids` is a function, but caused an error when attempting to use it to convert test file names to `unitizer` ids.
375s > 
375s > unitizer:::read_line_set_vals(NULL)
375s > 
375s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
375s > # - "Multiple Bookmarks" -------------------------------------------------------
375s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
375s > 
375s > # Issue 245: In review-all mode should not move to next unitizer until the
375s > # review bookmark is cleared.
375s > 
375s > temp.dir <- tempfile()
375s > dir.create(temp.dir)
375s > writeLines("'hello'\n'world'", file.path(temp.dir, "a.R"))
375s > writeLines("2 + 1\n3 + 2", file.path(temp.dir, "b.R"))
375s > writeLines("pi\n2 * pi\nsqrt(pi)", file.path(temp.dir, "c.R"))
375s > unitizer:::read_line_set_vals(
375s +   c("A","N","N","Y","Y","R","Y","Q","Y","R","Y","Y","Y","Y","Q")
375s + )
375s > unitize_dir(temp.dir, interactive.mode=TRUE)
375s 
375s | Summary of files in common directory '.':
375s | 
375s |          Pass Fail  New
375s | *1. a.R     -    -    2
375s | *2. b.R     -    -    2
375s | *3. c.R     -    -    3
375s | .......................
375s |             -    -    7
375s | Legend:
375s | * `unitizer` requires review
375s 
375s | Type number of unitizer to review, 'A' to review all that require review
375s 
375s unitizer> A
375s 
375s +------------------------------------------------------------------------------+
375s | unitizer for: a.R                                                            |
375s +------------------------------------------------------------------------------+
375s 
375s              Pass Fail  New
375s  <untitled>     -    -    2
375s ...........................
375s                 -    -    2
375s 
375s - New --------------------------------------------------------------------------
375s 
375s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
375s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
375s 
375s > "hello"
375s [1] "hello"
375s 
375s unitizer> N
375s 
375s > "world"
375s [1] "world"
375s 
375s unitizer> N
375s 
375s = Finalize Unitizer ============================================================
375s 
375s | You made no changes to the unitizer so there is no need to update it.  While 
375s | unnecessary, you can force an update by typing O at the prompt.
375s 
375s | Exit unitizer ([Y]es, [P]rev, [B]rowse, [R]erun, f[O]rce, [QQ]uit All)?
375s 
375s unitizer> Y
375s 
375s | unitizer unchanged.
375s 
375s +------------------------------------------------------------------------------+
375s | unitizer for: b.R                                                            |
375s +------------------------------------------------------------------------------+
375s 
375s              Pass Fail  New
375s  <untitled>     -    -    2
375s ...........................
375s                 -    -    2
375s 
375s - New --------------------------------------------------------------------------
375s 
375s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
375s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
375s 
375s > 2 + 1
375s [1] 3
375s 
375s unitizer> Y
375s 
375s > 3 + 2
375s [1] 5
375s 
375s unitizer> R
375s 
375s | Toggling re-run mode ON for this unitizer
375s 
375s = Finalize Unitizer ============================================================
375s 
375s | You have 1 unreviewed tests; press `B` to browse tests, `U` to go to first 
375s | unreviewed test.
375s 
375s | You will IRREVERSIBLY modify 'b.unitizer' by:
375s | - Adding 1 out of 2 new tests
375s 
375s | Update unitizer and re-run unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [U]
375s | nreviewed, [R]erun, [QQ]uit All)?
375s 
375s unitizer> Y
375s 
375s | unitizer updated.
375s 
375s +------------------------------------------------------------------------------+
375s | unitizer for: b.R                                                            |
375s +------------------------------------------------------------------------------+
375s 
375s              Pass Fail  New
375s  <untitled>     1    -    1
375s ...........................
375s                 1    -    1
375s 
375s - New --------------------------------------------------------------------------
375s 
375s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
375s | [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
375s 
375s | Jumping to test #2 because that was the test under review when test re-run was
375s | requested.
375s 
375s > 3 + 2
375s [1] 5
375s 
375s unitizer> Q
375s 
375s | No changes recorded.
375s | unitizer unchanged.
375s 
375s +------------------------------------------------------------------------------+
375s | unitizer for: c.R                                                            |
375s +------------------------------------------------------------------------------+
375s 
375s              Pass Fail  New
375s  <untitled>     -    -    3
375s ...........................
375s                 -    -    3
375s 
375s - New --------------------------------------------------------------------------
375s 
375s | The 3 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
375s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
375s 
375s > pi
375s [1] 3.14
375s 
375s unitizer> Y
375s 
375s > 2 * pi
375s [1] 6.28
375s 
375s unitizer> R
375s 
375s | Toggling re-run mode ON for this unitizer
375s 
376s = Finalize Unitizer ============================================================
376s 
376s | You have 2 unreviewed tests; press `B` to browse tests, `U` to go to first 
376s | unreviewed test.
376s 
376s | You will IRREVERSIBLY modify 'c.unitizer' by:
376s | - Adding 1 out of 3 new tests
376s 
376s | Update unitizer and re-run unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [U]
376s | nreviewed, [R]erun, [QQ]uit All)?
376s 
376s unitizer> Y
376s 
376s | unitizer updated.
376s 
376s +------------------------------------------------------------------------------+
376s | unitizer for: c.R                                                            |
376s +------------------------------------------------------------------------------+
376s 
376s              Pass Fail  New
376s  <untitled>     1    -    2
376s ...........................
376s                 1    -    2
376s 
376s - New --------------------------------------------------------------------------
376s 
376s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
376s | [B]rowse, [R]erun, [Q]uit, [H]elp)?
376s 
376s | Jumping to test #2 because that was the test under review when test re-run was
376s | requested.
376s 
376s > 2 * pi
376s [1] 6.28
376s 
376s unitizer> Y
376s 
376s > sqrt(pi)
376s [1] 1.77
376s 
376s unitizer> Y
376s 
376s = Finalize Unitizer ============================================================
376s 
376s | You will IRREVERSIBLY modify 'c.unitizer' by:
376s | - Adding 2 out of 2 new tests
376s 
376s | Update unitizer ([Y]es, [N]o, [P]rev, [B]rowse, [R]erun)?
376s 
376s unitizer> Y
376s 
376s | unitizer updated.
376s 
376s | Summary of files in common directory '.':
376s | 
376s |          Pass Fail  New
376s | *1. a.R     -    -    2
376s | *2. b.R     1    -    1
376s | $3. c.R     ?    ?    ?
376s | .......................
376s |             ?    ?    ?
376s | Legend:
376s | * `unitizer` requires review
376s | $ `unitizer` has been modified and needs to be re-run to recompute summary
376s 
376s | Type number of unitizer to review, 'A' to review all that require review, 'R' 
376s | to re-run all updated
376s 
376s unitizer> Q
376s 
376s > 
376s > # Make sure re-eval all clears all bookmarks
376s > unlink(
376s +   list.files(temp.dir, full.names=TRUE, pattern="\\.unitizer$"),
376s +   recursive=TRUE
376s + )
376s > unitizer:::read_line_set_vals(c("A","Q","Y","RR","Y","Q"))
376s > unitize_dir(temp.dir, interactive.mode=TRUE)
376s 
376s | Summary of files in common directory '.':
376s | 
376s |          Pass Fail  New
376s | *1. a.R     -    -    2
376s | *2. b.R     -    -    2
376s | *3. c.R     -    -    3
376s | .......................
376s |             -    -    7
376s | Legend:
376s | * `unitizer` requires review
376s 
376s | Type number of unitizer to review, 'A' to review all that require review
376s 
376s unitizer> A
376s 
376s +------------------------------------------------------------------------------+
376s | unitizer for: a.R                                                            |
376s +------------------------------------------------------------------------------+
376s 
376s              Pass Fail  New
376s  <untitled>     -    -    2
376s ...........................
376s                 -    -    2
376s 
376s - New --------------------------------------------------------------------------
376s 
376s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
376s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
376s 
376s > "hello"
376s [1] "hello"
376s 
376s unitizer> Q
376s 
376s | No changes recorded.
376s | unitizer unchanged.
376s 
376s +------------------------------------------------------------------------------+
376s | unitizer for: b.R                                                            |
376s +------------------------------------------------------------------------------+
376s 
376s              Pass Fail  New
376s  <untitled>     -    -    2
376s ...........................
376s                 -    -    2
376s 
376s - New --------------------------------------------------------------------------
376s 
376s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
376s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
376s 
376s > 2 + 1
376s [1] 3
376s 
376s unitizer> Y
376s 
376s > 3 + 2
376s [1] 5
376s 
376s unitizer> RR
376s 
376s | Toggling re-run mode ON for all loaded unitizers
376s 
376s = Finalize Unitizer ============================================================
376s 
376s | You have 1 unreviewed tests; press `B` to browse tests, `U` to go to first 
376s | unreviewed test.
376s 
376s | You will IRREVERSIBLY modify 'b.unitizer' by:
376s | - Adding 1 out of 2 new tests
376s 
376s | Update unitizer and re-run all loaded unitizers ([Y]es, [N]o, [P]rev, [B]
376s | rowse, [U]nreviewed, [R]erun, [QQ]uit All)?
376s 
376s unitizer> Y
376s 
376s | unitizer updated.
376s 
376s | Summary of files in common directory '.':
376s | 
376s |          Pass Fail  New
376s | *1. a.R     -    -    2
376s | *2. b.R     1    -    1
376s | *3. c.R     -    -    3
376s | .......................
376s |             1    -    6
376s | Legend:
376s | * `unitizer` requires review
376s 
376s | Type number of unitizer to review, 'A' to review all that require review
376s 
376s unitizer> Q
376s 
376s > 
376s > unitizer:::read_line_set_vals(NULL)
376s > unlink(temp.dir, recursive=TRUE)
376s > 
376s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
376s > # - "Non-Standard Conditions" --------------------------------------------------
376s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
376s > 
376s > # Issue 272: some conditions don't produce any output, but for `unitizer` we
376s > # consider normally non-test expressions that produce conditions as tests.  So
376s > # we need a mechanism for clarifying what happened.
376s > 
376s > temp.dir <- tempfile()
376s > temp.file <- file.path(temp.dir, 'a.R')
376s > dir.create(temp.dir)
376s > 
376s > unitizer:::read_line_set_vals("Q")
376s > writeLines(
376s +   c(
376s +     "cond <- simpleCondition('hello')",
376s +     "class(cond) <- c('svgchop_unsupported', 'svgchop', class(cond))",
376s +     "invisible(signalCondition(cond))"
376s +   ),
376s +   temp.file
376s + )
376s > unitize(temp.file, interactive.mode=TRUE)
376s 
377s +------------------------------------------------------------------------------+
377s | unitizer for: a.R                                                            |
377s +------------------------------------------------------------------------------+
377s 
377s              Pass Fail  New
377s  <untitled>     -    -    1
377s ...........................
377s                 -    -    1
377s 
377s - New --------------------------------------------------------------------------
377s 
377s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
377s | [R]erun, [Q]uit, [H]elp)?
377s 
377s > cond <- simpleCondition("hello")
377s > class(cond) <- c("svgchop_unsupported", "svgchop", class(cond))
377s > invisible(signalCondition(cond))
377s 
377s | Test silently signalled conditions (use e.g. .NEW$conditions[[1]] to inspect):
377s 
377s Condition list with 1 condition:
377s 1. svgchop_unsupported: hello
377s 
377s unitizer> Q
377s 
377s | No changes recorded.
377s | unitizer unchanged.
377s 
377s > 
377s > unitizer:::read_line_set_vals(NULL)
377s > unlink(temp.dir, recursive=TRUE)
377s > 
377s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
377s > # - "Output Transcript in non-Interactive" -------------------------------------
377s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
377s > 
377s > # Issue 286: don't capture output in non-interactive.
377s > # We need `try` because we're testing what happens when the unitizer fails.
377s > 
377s > temp.dir <- tempfile()
377s > temp.file <- file.path(temp.dir, 'a.R')
377s > dir.create(temp.dir)
377s > writeLines('warning("boom")', temp.file)  # can't use error b/c try below
377s > old.opt <- options(unitizer.transcript=NULL, unitizer.show.progress=TRUE)
377s > try(unitize(temp.file))
377s 
377s Warning in check_call_stack() :
377s   It appears you are running unitizer inside an error handling function such as 
377s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
377s couraged as it may cause unpredictable behavior from unitizer in the event tests
377s produce conditions / errors.  We strongly recommend you re-run your tests 
377s outside of such handling functions.
377s Preloads...
377s Loading unitizer data...
377s Parsing tests...
377s Parsing a.R
377s Evaluating tests...
377s 
377s warning("boom")
377s Warning in withVisible(warning("boom")) : boom
377s 
377s Prepping Unitizers...
377s Warning in history_capt(history, interactive.mode) :
377s   Unable to capture history in non-interactive mode.
377s 
377s +------------------------------------------------------------------------------+
377s | unitizer for: a.R                                                            |
377s +------------------------------------------------------------------------------+
377s 
377s              Pass Fail  New
377s  <untitled>     -    -    1
377s ...........................
377s                 -    -    1
377s 
377s - New --------------------------------------------------------------------------
377s 
377s | The following test is new. Add test to store ([Y]es, [N]o, [P]rev, [B]rowse, 
377s | [R]erun, [Q]uit, [H]elp)?
377s 
377s > warning("boom")
377s 
377s | Test signalled conditions (use e.g. .NEW$conditions[[1]] to inspect):
377s 
377s Condition list with 1 condition:
377s 1. Warning: boom
377s 
377s | User input required to proceed, but we are in non-interactive mode.
377s 
377s | unitizer unchanged.
377s 
377s |   * New: warning("boom")
377s | in 'a.R'
377s 
377s | Newly evaluated tests do not match unitizer (New: 1); see above for more info,
377s | or run in interactive mode.
377s 
377s | Running in transcript mode: only stderr text that is also part of a signalled 
377s | condition is in the test review section (scroll up to the evaluation section 
377s | for the rest). See `transcript` parameter in `?unitize`.
377s 
377s Error in unitize_core(test.file.inf, list(store.id.inf), state = state,  : 
377s   Cannot proceed in non-interactive mode.
377s > options(old.opt)
377s > unlink(temp.dir, recursive=TRUE)
377s > 
377s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
377s > # - "Display All Tests in non-Interactive" -------------------------------------
377s > # /\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\/\
377s > 
377s > # Issue 293: don't stop after first failing test
377s > # We need `try` because we're testing what happens when the unitizer fails.
377s > 
377s > temp.dir <- tempfile()
377s > temp.file.a <- file.path(temp.dir, 'a.R')
377s > temp.file.b <- file.path(temp.dir, 'b.R')
377s > dir.create(temp.dir)
377s > writeLines(c("1 + 1", "warning('hello')"), temp.file.a)
377s > writeLines(c("2 + 1", "warning('goodbye')"), temp.file.b)
377s > try(unitize_dir(temp.dir, transcript=FALSE))
377s 
377s Warning in check_call_stack() :
377s   It appears you are running unitizer inside an error handling function such as 
377s `withCallingHanlders`, `tryCatch`, or `withRestarts`.  This is strongly dis-
377s couraged as it may cause unpredictable behavior from unitizer in the event tests
377s produce conditions / errors.  We strongly recommend you re-run your tests 
377s outside of such handling functions.
377s Warning in history_capt(history, interactive.mode) :
377s   Unable to capture history in non-interactive mode.
377s | Summary of files in common directory '.':
377s | 
377s |          Pass Fail  New
377s | *1. a.R     -    -    2
377s | *2. b.R     -    -    2
377s | .......................
377s |             -    -    4
377s | Legend:
377s | * `unitizer` requires review
377s 
377s +------------------------------------------------------------------------------+
377s | unitizer for: a.R                                                            |
377s +------------------------------------------------------------------------------+
377s 
377s              Pass Fail  New
377s  <untitled>     -    -    2
377s ...........................
377s                 -    -    2
377s 
377s - New --------------------------------------------------------------------------
377s 
377s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
377s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
377s 
377s > 1 + 1
377s [1] 2
377s 
377s > warning("hello")
377s Warning: hello
377s 
377s | User input required to proceed, but we are in non-interactive mode.
377s 
377s | unitizer unchanged.
377s 
377s +------------------------------------------------------------------------------+
377s | unitizer for: b.R                                                            |
377s +------------------------------------------------------------------------------+
377s 
377s              Pass Fail  New
377s  <untitled>     -    -    2
377s ...........................
377s                 -    -    2
377s 
377s - New --------------------------------------------------------------------------
377s 
377s | The 2 tests in this section are new. Add tests to store ([Y]es, [N]o, [P]rev, 
377s | [B]rowse, [R]erun, [QQ]uit All, [Q]uit, [H]elp)?
377s 
377s > 2 + 1
377s [1] 3
377s 
377s > warning("goodbye")
377s Warning: goodbye
377s 
377s | User input required to proceed, but we are in non-interactive mode.
377s 
377s | unitizer unchanged.
377s 
377s |   * New: 1 + 1
377s |   * New: warning("hello")
377s | in 'a.R'
377s 
377s |   * New: 2 + 1
377s |   * New: warning("goodbye")
377s | in 'b.R'
377s 
377s | Newly evaluated tests do not match unitizer (New: 4); see above for more info,
377s | or run in interactive mode.
377s 
377s Error in unitize_core(test.files = test.files, store.ids = store.ids,  : 
377s   Cannot proceed in non-interactive mode.
377s > options(old.opt)
377s > unlink(temp.dir, recursive=TRUE)
377s > 
377s > 
377s PASS
377s Begin testing zz-check.R
377s 
377s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
377s Copyright (C) 2024 The R Foundation for Statistical Computing
377s Platform: arm-unknown-linux-gnueabihf (32-bit)
377s 
377s R is free software and comes with ABSOLUTELY NO WARRANTY.
377s You are welcome to redistribute it under certain conditions.
377s Type 'license()' or 'licence()' for distribution details.
377s 
377s R is a collaborative project with many contributors.
377s Type 'contributors()' for more information and
377s 'citation()' on how to cite R or R packages in publications.
377s 
377s Type 'demo()' for some demos, 'help()' for on-line help, or
377s 'help.start()' for an HTML browser interface to help.
377s Type 'q()' to quit R.
377s 
377s > source('aammrtf/check.R')
377s 43: > lorem1 <- "Today, with Kiernan on the stand offering confirmation, Howard walked the jury through the enormous amount of data pulled from Ulbricht's computer. Defense lawyers haven't had a chance yet to respond to this evidence<e2><80><94>that will likely come tomorrow. The mountain they have to climb looks higher than ever, though. Last week, Ulbricht's lawyer outlined a defense in which Ulbricht walked away from the marketplace he created and was \"lured back.\" But what will explain the dozens of folders of data on this laptop, with data from the upper echelons of Silk Road management<e2><80><94>mixed with the most intimate details of Ulbricht's personal life?"
377s Warning message:
377s In eval(ei, envir) : Some outputs contain non-ASCII:
377s 't-text.Rout'
377s > 
377s PASS
378s autopkgtest [02:13:37]: test run-unit-test: -----------------------]
383s run-unit-test        PASS
383s autopkgtest [02:13:42]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
387s autopkgtest [02:13:46]: test pkg-r-autopkgtest: preparing testbed
397s Reading package lists...
397s Building dependency tree...
397s Reading state information...
398s Starting pkgProblemResolver with broken count: 0
398s Starting 2 pkgProblemResolver with broken count: 0
398s Done
398s The following additional packages will be installed:
398s   build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
398s   cpp-arm-linux-gnueabihf dctrl-tools g++ g++-13 g++-13-arm-linux-gnueabihf
398s   g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf
398s   gcc-arm-linux-gnueabihf gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf
398s   gfortran-arm-linux-gnueabihf icu-devtools libasan8 libatomic1 libblas-dev
398s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
398s   libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev
398s   libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0
398s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev
398s   libreadline-dev libstdc++-13-dev libubsan1 linux-libc-dev pkg-config
398s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
398s Suggested packages:
398s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
398s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
398s   gdb-arm-linux-gnueabihf gfortran-doc gfortran-13-doc libcoarrays-dev
398s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
398s   libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic
398s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
398s   texlive-latex-recommended texlive-latex-extra texinfo
398s Recommended packages:
398s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools
399s The following NEW packages will be installed:
399s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
399s   cpp-arm-linux-gnueabihf dctrl-tools g++ g++-13 g++-13-arm-linux-gnueabihf
399s   g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf
399s   gcc-arm-linux-gnueabihf gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf
399s   gfortran-arm-linux-gnueabihf icu-devtools libasan8 libatomic1 libblas-dev
399s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
399s   libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev
399s   libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0
399s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev
399s   libreadline-dev libstdc++-13-dev libubsan1 linux-libc-dev pkg-config
399s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
399s 0 upgraded, 56 newly installed, 0 to remove and 1 not upgraded.
399s Need to get 74.3 MB/74.3 MB of archives.
399s After this operation, 232 MB of additional disk space will be used.
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399s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-dev-bin armhf 2.39-0ubuntu6 [19.1 kB]
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405s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu1 [263 kB]
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405s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu1 [880 kB]
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405s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma-dev armhf 5.6.0-0.2 [166 kB]
405s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-dev all 4.3.3-2build1 [4334 B]
405s Get:56 http://ftpmaster.internal/ubuntu noble/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
406s Fetched 74.3 MB in 6s (12.1 MB/s)
406s Selecting previously unselected package libc-dev-bin.
406s (Reading database ... 
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406s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_armhf.deb ...
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407s Selecting previously unselected package libcc1-0:armhf.
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407s Selecting previously unselected package libatomic1:armhf.
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407s Selecting previously unselected package libasan8:armhf.
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407s Unpacking libasan8:armhf (14-20240315-1ubuntu1) ...
407s Selecting previously unselected package libubsan1:armhf.
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407s Unpacking libubsan1:armhf (14-20240315-1ubuntu1) ...
407s Selecting previously unselected package libgcc-13-dev:armhf.
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408s Selecting previously unselected package gcc-arm-linux-gnueabihf.
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408s Selecting previously unselected package libstdc++-13-dev:armhf.
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408s Selecting previously unselected package g++-13.
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408s Unpacking g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
408s Selecting previously unselected package g++.
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408s Unpacking g++ (4:13.2.0-7ubuntu1) ...
408s Selecting previously unselected package build-essential.
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408s Selecting previously unselected package dctrl-tools.
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408s Selecting previously unselected package libgfortran-13-dev:armhf.
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409s Unpacking gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
409s Selecting previously unselected package gfortran.
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409s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
409s Selecting previously unselected package icu-devtools.
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409s Selecting previously unselected package libblas-dev:armhf.
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409s Unpacking libblas-dev:armhf (3.12.0-3) ...
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409s Selecting previously unselected package libicu-dev:armhf.
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409s Selecting previously unselected package libjpeg-turbo8-dev:armhf.
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409s Selecting previously unselected package liblapack-dev:armhf.
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410s Unpacking libpcre2-dev:armhf (10.42-4ubuntu1) ...
410s Selecting previously unselected package libpkgconf3:armhf.
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410s Selecting previously unselected package libpng-dev:armhf.
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410s Selecting previously unselected package libreadline-dev:armhf.
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410s Setting up linux-libc-dev:armhf (6.8.0-20.20) ...
410s Setting up libpcre2-16-0:armhf (10.42-4ubuntu1) ...
410s Setting up libpcre2-32-0:armhf (10.42-4ubuntu1) ...
410s Setting up libpkgconf3:armhf (1.8.1-2) ...
410s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
410s Setting up libmpc3:armhf (1.3.1-1) ...
410s Setting up libatomic1:armhf (14-20240315-1ubuntu1) ...
410s Setting up icu-devtools (74.2-1ubuntu1) ...
410s Setting up pkgconf-bin (1.8.1-2) ...
410s Setting up liblzma-dev:armhf (5.6.0-0.2) ...
410s Setting up libubsan1:armhf (14-20240315-1ubuntu1) ...
410s Setting up libpcre2-posix3:armhf (10.42-4ubuntu1) ...
410s Setting up libcrypt-dev:armhf (1:4.4.36-4) ...
410s Setting up libasan8:armhf (14-20240315-1ubuntu1) ...
410s Setting up libisl23:armhf (0.26-3) ...
410s Setting up libc-dev-bin (2.39-0ubuntu6) ...
410s Setting up libcc1-0:armhf (14-20240315-1ubuntu1) ...
410s Setting up libblas-dev:armhf (3.12.0-3) ...
410s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
410s Setting up dctrl-tools (2.24-3build2) ...
410s Setting up cpp-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
410s Setting up pkgconf:armhf (1.8.1-2) ...
410s Setting up liblapack-dev:armhf (3.12.0-3) ...
410s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
410s Setting up pkg-config:armhf (1.8.1-2) ...
410s Setting up libgcc-13-dev:armhf (13.2.0-19ubuntu1) ...
410s Setting up libc6-dev:armhf (2.39-0ubuntu6) ...
410s Setting up libgfortran-13-dev:armhf (13.2.0-19ubuntu1) ...
410s Setting up libicu-dev:armhf (74.2-1ubuntu1) ...
410s Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
410s Setting up libstdc++-13-dev:armhf (13.2.0-19ubuntu1) ...
410s Setting up libbz2-dev:armhf (1.0.8-5ubuntu1) ...
410s Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ...
410s Setting up libncurses-dev:armhf (6.4+20240113-1ubuntu1) ...
410s Setting up libpcre2-dev:armhf (10.42-4ubuntu1) ...
410s Setting up cpp-13 (13.2.0-19ubuntu1) ...
410s Setting up libreadline-dev:armhf (8.2-3.1build1) ...
410s Setting up gcc-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
410s Setting up gcc-13 (13.2.0-19ubuntu1) ...
410s Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu1) ...
410s Setting up cpp (4:13.2.0-7ubuntu1) ...
410s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ...
410s Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
410s Setting up g++-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
410s Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
410s Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
410s Setting up g++-13 (13.2.0-19ubuntu1) ...
410s Setting up libpng-dev:armhf (1.6.43-3) ...
410s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ...
410s Setting up gcc (4:13.2.0-7ubuntu1) ...
410s Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
410s Setting up gfortran-13 (13.2.0-19ubuntu1) ...
410s Setting up g++ (4:13.2.0-7ubuntu1) ...
410s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
410s Setting up build-essential (12.10ubuntu1) ...
410s Setting up gfortran (4:13.2.0-7ubuntu1) ...
410s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
410s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
410s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
410s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
410s Setting up r-base-dev (4.3.3-2build1) ...
410s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
410s Setting up autopkgtest-satdep (0) ...
410s Processing triggers for man-db (2.12.0-3build4) ...
411s Processing triggers for install-info (7.1-3build1) ...
411s Processing triggers for libc-bin (2.39-0ubuntu6) ...
423s (Reading database ... 75719 files and directories currently installed.)
423s Removing autopkgtest-satdep (0) ...
428s autopkgtest [02:14:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
428s autopkgtest [02:14:27]: test pkg-r-autopkgtest: [-----------------------
430s Test: Try to load the R library unitizer
430s 
430s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
430s Copyright (C) 2024 The R Foundation for Statistical Computing
430s Platform: arm-unknown-linux-gnueabihf (32-bit)
430s 
430s R is free software and comes with ABSOLUTELY NO WARRANTY.
430s You are welcome to redistribute it under certain conditions.
430s Type 'license()' or 'licence()' for distribution details.
430s 
430s R is a collaborative project with many contributors.
430s Type 'contributors()' for more information and
430s 'citation()' on how to cite R or R packages in publications.
430s 
430s Type 'demo()' for some demos, 'help()' for on-line help, or
430s 'help.start()' for an HTML browser interface to help.
430s Type 'q()' to quit R.
430s 
430s > library('unitizer')
431s State tracking is disabled by default to comply with CRAN policies. Add `options(unitizer.state='suggested')` to your 'Rprofile' file to enable, or `options(unitizer.state='off')` to quash this message without enabling.  Prior to enabling, be sure to read `?unitizerState`,in particular the 'CRAN non-compliance' section.
431s > 
431s > 
431s Other tests are currently unsupported!
431s They will be progressively added.
431s autopkgtest [02:14:30]: test pkg-r-autopkgtest: -----------------------]
435s pkg-r-autopkgtest    PASS
435s autopkgtest [02:14:34]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
438s autopkgtest [02:14:37]: @@@@@@@@@@@@@@@@@@@@ summary
438s run-unit-test        PASS
438s pkg-r-autopkgtest    PASS