0s autopkgtest [12:42:58]: starting date and time: 2024-03-26 12:42:58+0000 0s autopkgtest [12:42:58]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [12:42:58]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rhl_34n6/out --timeout-copy=6000 --setup-commands 'dhclient || true; ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade r-cran-survey --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- lxd -r lxd-armhf-10.145.243.59 lxd-armhf-10.145.243.59:autopkgtest/ubuntu/noble/armhf 23s autopkgtest [12:43:21]: testbed dpkg architecture: armhf 25s autopkgtest [12:43:23]: testbed apt version: 2.7.12 25s autopkgtest [12:43:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 32s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 32s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 32s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4019 kB] 33s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B] 33s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 33s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [669 kB] 33s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B] 33s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B] 33s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B] 33s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4075 kB] 33s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B] 33s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [49.1 kB] 33s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B] 35s Fetched 9502 kB in 2s (5541 kB/s) 36s Reading package lists... 43s sh: 1: dhclient: not found 45s tee: /proc/self/fd/2: Permission denied 66s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 66s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 66s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 66s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 67s Reading package lists... 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Calculating upgrade... 69s The following packages were automatically installed and are no longer required: 69s linux-headers-6.8.0-11 python3-distutils python3-lib2to3 69s Use 'apt autoremove' to remove them. 69s The following packages will be REMOVED: 69s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 69s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 69s libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2 69s libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0 69s libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic 69s The following NEW packages will be installed: 69s libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64 69s libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 69s libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64 69s libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 69s libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64 69s libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20 69s linux-headers-6.8.0-20-generic xdg-user-dirs 69s The following packages have been kept back: 69s multipath-tools 69s The following packages will be upgraded: 69s apparmor apt apt-utils base-files bind9-dnsutils bind9-host bind9-libs 69s binutils binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils 69s bsdutils btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon 69s dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base 69s dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp 69s fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 69s gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 69s groff-base ibverbs-providers inetutils-telnet info initramfs-tools 69s initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd 69s kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils 69s libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 69s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 69s libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libcap-ng0 libcom-err2 69s libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3 libdebconfclient0 69s libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7 libexpat1 libfdisk1 69s libfido2-1 libftdi1-2 libfwupd2 libgcc-s1 libgirepository-1.0-1 69s libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0 libgusb2 libibverbs1 69s libjcat1 libjq1 libjson-glib-1.0-0 libjson-glib-1.0-common libk5crypto3 69s libkmod2 libkrb5-3 libkrb5support0 libldap-common libldap2 69s liblocale-gettext-perl liblzma5 libmagic-mgc libmbim-glib4 libmbim-proxy 69s libmm-glib0 libmount1 libnghttp2-14 libnsl2 libnss-systemd libpam-modules 69s libpam-modules-bin libpam-runtime libpam-systemd libpam0g libplymouth5 69s libpolkit-agent-1-0 libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 69s libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib 69s libpython3.12-minimal libpython3.12-stdlib libqmi-glib5 libqmi-proxy 69s libqrtr-glib0 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db 69s libseccomp2 libselinux1 libsemanage-common libsemanage2 libsframe1 libslang2 69s libsmartcols1 libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared 69s libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtirpc-common 69s libudev1 libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 69s libxmuu1 linux-headers-generic logsave lshw lsof man-db motd-news-config 69s mount mtr-tiny netplan-generator netplan.io openssh-client openssh-server 69s openssh-sftp-server openssl parted perl perl-base perl-modules-5.38 69s pinentry-curses plymouth plymouth-theme-ubuntu-text procps psmisc 69s python-apt-common python3 python3-apt python3-cryptography python3-dbus 69s python3-distutils python3-gdbm python3-gi python3-lib2to3 python3-minimal 69s python3-netplan python3-pkg-resources python3-pyrsistent python3-setuptools 69s python3-typing-extensions python3-yaml python3.11 python3.11-minimal 69s python3.12 python3.12-minimal readline-common rsync rsyslog shared-mime-info 69s sudo systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd 69s tcpdump telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 69s usb.ids util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g 69s 236 upgraded, 32 newly installed, 30 to remove and 1 not upgraded. 69s Need to get 100 MB of archives. 69s After this operation, 85.0 MB of additional disk space will be used. 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf motd-news-config all 13ubuntu8 [5098 B] 69s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-files armhf 13ubuntu8 [73.9 kB] 69s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB] 69s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB] 69s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu1 [119 kB] 69s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-6ubuntu1 [320 kB] 70s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-6ubuntu1 [31.5 kB] 70s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-6ubuntu1 [78.6 kB] 70s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB] 70s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB] 70s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB] 70s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB] 70s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB] 70s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB] 70s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB] 70s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB] 70s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB] 70s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB] 70s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB] 70s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 70s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B] 70s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB] 70s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB] 70s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB] 70s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB] 70s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu8 [296 kB] 70s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu8 [219 kB] 70s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB] 70s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB] 70s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB] 70s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu2 [137 kB] 70s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB] 70s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB] 70s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB] 70s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB] 70s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB] 70s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB] 70s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB] 70s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB] 70s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB] 70s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB] 70s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 70s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB] 70s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B] 70s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB] 70s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB] 70s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB] 70s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB] 70s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB] 71s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB] 71s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB] 71s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB] 71s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB] 71s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB] 71s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 71s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B] 71s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB] 71s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB] 71s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB] 71s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB] 71s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB] 71s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 71s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB] 71s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB] 71s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB] 71s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB] 71s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB] 71s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB] 71s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB] 71s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB] 71s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB] 71s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB] 71s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB] 71s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB] 71s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB] 71s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB] 71s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB] 71s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB] 71s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB] 71s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB] 71s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB] 71s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB] 71s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB] 71s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB] 71s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB] 71s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB] 71s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB] 71s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB] 71s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB] 71s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B] 71s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 71s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB] 71s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu1.1 [17.1 kB] 71s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB] 71s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB] 71s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B] 71s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB] 71s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB] 71s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB] 71s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB] 71s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB] 71s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB] 72s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB] 72s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB] 72s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu8 [290 kB] 72s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB] 72s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB] 72s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB] 72s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB] 72s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB] 72s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB] 72s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB] 72s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB] 72s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB] 72s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB] 72s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 72s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B] 72s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB] 72s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB] 72s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB] 72s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB] 72s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B] 72s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB] 72s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB] 72s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB] 72s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-2 [123 kB] 72s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB] 72s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-2 [4350 kB] 72s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB] 72s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB] 72s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB] 72s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.2 [19.4 kB] 72s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.2 [216 kB] 72s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB] 72s Get:135 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B] 72s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB] 72s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB] 72s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB] 72s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB] 72s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB] 72s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB] 72s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4 [129 kB] 72s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB] 72s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB] 72s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB] 72s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB] 73s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB] 73s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.7 [162 kB] 73s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB] 73s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB] 73s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.7 [19.8 kB] 73s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 73s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 73s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB] 73s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB] 73s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB] 73s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B] 73s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB] 73s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB] 73s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB] 73s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4 [56.4 kB] 73s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB] 73s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB] 73s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 73s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB] 73s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB] 73s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB] 73s Get:168 http://ftpmaster.internal/ubuntu noble/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB] 73s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB] 73s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB] 73s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB] 73s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B] 73s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB] 73s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB] 73s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB] 73s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB] 73s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B] 73s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB] 73s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB] 73s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB] 73s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB] 73s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB] 73s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB] 73s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B] 73s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB] 73s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB] 73s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB] 73s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B] 73s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB] 73s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 73s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB] 73s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB] 73s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB] 73s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB] 73s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB] 73s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB] 73s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB] 73s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB] 73s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB] 73s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB] 73s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu2 [49.0 kB] 73s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu2 [700 kB] 73s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB] 74s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB] 74s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB] 74s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB] 74s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB] 74s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB] 74s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB] 74s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB] 74s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB] 74s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB] 74s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB] 74s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB] 74s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB] 74s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB] 74s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB] 74s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB] 74s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-21ubuntu1 [48.3 kB] 74s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB] 74s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB] 74s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB] 74s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] 74s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 74s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB] 74s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsyslog armhf 8.2312.0-3ubuntu7 [460 kB] 74s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu6 [665 kB] 74s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu6 [385 kB] 74s Get:229 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB] 74s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu6 [62.5 kB] 74s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB] 74s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B] 74s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB] 74s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB] 74s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B] 74s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB] 74s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB] 74s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B] 74s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB] 74s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB] 74s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B] 74s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB] 74s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB] 74s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB] 74s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB] 74s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB] 75s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB] 75s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B] 75s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB] 75s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB] 75s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB] 75s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB] 75s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB] 75s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB] 75s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 75s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB] 75s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB] 75s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB] 75s Get:259 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB] 75s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB] 75s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB] 75s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 75s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB] 75s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 75s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 75s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB] 75s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB] 75s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB] 75s Preconfiguring packages ... 76s Fetched 100 MB in 6s (17.1 MB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 76s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ... 76s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ... 76s Preparing to unpack .../base-files_13ubuntu8_armhf.deb ... 76s Unpacking base-files (13ubuntu8) over (13ubuntu7) ... 76s Setting up base-files (13ubuntu8) ... 77s motd-news.service is a disabled or a static unit not running, not starting it. 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 77s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ... 77s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 77s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 77s Preparing to unpack .../0-libbrotli1_1.1.0-2build1_armhf.deb ... 77s Unpacking libbrotli1:armhf (1.1.0-2build1) over (1.1.0-2) ... 77s Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6ubuntu1_armhf.deb ... 77s Unpacking libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 77s Preparing to unpack .../2-libkrb5-3_1.20.1-6ubuntu1_armhf.deb ... 77s Unpacking libkrb5-3:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 77s Preparing to unpack .../3-libkrb5support0_1.20.1-6ubuntu1_armhf.deb ... 77s Unpacking libkrb5support0:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 77s Preparing to unpack .../4-libk5crypto3_1.20.1-6ubuntu1_armhf.deb ... 77s Unpacking libk5crypto3:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 77s Preparing to unpack .../5-libcom-err2_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 77s Unpacking libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 77s Preparing to unpack .../6-zlib1g_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ... 77s Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 77s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 77s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ... 77s Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ... 77s Preparing to unpack .../udisks2_2.10.1-6_armhf.deb ... 77s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ... 77s Preparing to unpack .../libudisks2-0_2.10.1-6_armhf.deb ... 77s Unpacking libudisks2-0:armhf (2.10.1-6) over (2.10.1-1ubuntu2) ... 77s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_armhf.deb ... 77s Unpacking libblkid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 77s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 77s Preparing to unpack .../liblzma5_5.6.0-0.2_armhf.deb ... 77s Unpacking liblzma5:armhf (5.6.0-0.2) over (5.4.5-0.3) ... 77s Setting up liblzma5:armhf (5.6.0-0.2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 77s Preparing to unpack .../0-kmod_31+20240202-2ubuntu4_armhf.deb ... 77s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 77s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty 77s Preparing to unpack .../1-libkmod2_31+20240202-2ubuntu4_armhf.deb ... 77s Unpacking libkmod2:armhf (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 77s Preparing to unpack .../2-systemd-dev_255.4-1ubuntu5_all.deb ... 77s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 77s Preparing to unpack .../3-systemd-timesyncd_255.4-1ubuntu5_armhf.deb ... 77s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 78s Preparing to unpack .../4-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ... 78s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 78s Preparing to unpack .../5-libaudit-common_1%3a3.1.2-2.1_all.deb ... 78s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ... 78s Setting up libaudit-common (1:3.1.2-2.1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 78s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ... 78s Unpacking libcap-ng0:armhf (0.8.4-2build1) over (0.8.4-2) ... 78s Setting up libcap-ng0:armhf (0.8.4-2build1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 78s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_armhf.deb ... 78s Unpacking libaudit1:armhf (1:3.1.2-2.1) over (1:3.1.2-2) ... 78s Setting up libaudit1:armhf (1:3.1.2-2.1) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 78s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ... 78s Unpacking libpam0g:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 78s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 78s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ... 78s Unpacking libselinux1:armhf (3.5-2ubuntu1) over (3.5-2build1) ... 78s Setting up libselinux1:armhf (3.5-2ubuntu1) ... 78s dpkg: libcurl4:armhf: dependency problems, but removing anyway as you requested: 78s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 78s 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58618 files and directories currently installed.) 78s Removing libcurl4:armhf (8.5.0-2ubuntu2) ... 78s Selecting previously unselected package libcurl4t64:armhf. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58613 files and directories currently installed.) 78s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_armhf.deb ... 78s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu8) ... 78s Preparing to unpack .../curl_8.5.0-2ubuntu8_armhf.deb ... 78s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ... 78s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested: 78s wget depends on libpsl5 (>= 0.16.0). 78s libcurl3-gnutls:armhf depends on libpsl5 (>= 0.16.0). 78s 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 78s Removing libpsl5:armhf (0.21.2-1build1) ... 78s Selecting previously unselected package libpsl5t64:armhf. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58614 files and directories currently installed.) 78s Preparing to unpack .../libpsl5t64_0.21.2-1.1_armhf.deb ... 78s Unpacking libpsl5t64:armhf (0.21.2-1.1) ... 78s Preparing to unpack .../wget_1.21.4-1ubuntu2_armhf.deb ... 78s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ... 78s Preparing to unpack .../tnftp_20230507-2build1_armhf.deb ... 78s Unpacking tnftp (20230507-2build1) over (20230507-2) ... 78s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested: 78s tcpdump depends on libpcap0.8 (>= 1.9.1). 78s 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58620 files and directories currently installed.) 78s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ... 78s Selecting previously unselected package libpcap0.8t64:armhf. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58609 files and directories currently installed.) 78s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu2_armhf.deb ... 78s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ... 78s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ... 78s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 78s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ... 78s Unpacking libsystemd-shared:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 79s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ... 79s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 79s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ... 79s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 79s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ... 79s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 79s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ... 79s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 79s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_armhf.deb ... 79s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 79s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ... 79s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 79s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ... 79s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 79s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ... 79s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 79s Selecting previously unselected package linux-headers-6.8.0-20. 79s Preparing to unpack .../11-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 79s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 91s Selecting previously unselected package linux-headers-6.8.0-20-generic. 91s Preparing to unpack .../12-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ... 91s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 158s Preparing to unpack .../13-linux-headers-generic_6.8.0-20.20+1_armhf.deb ... 158s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89772 files and directories currently installed.) 158s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ... 158s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested: 158s systemd depends on libssl3 (>= 3.0.0). 158s libssh-4:armhf depends on libssl3 (>= 3.0.0). 158s libsasl2-modules:armhf depends on libssl3 (>= 3.0.0). 158s libsasl2-2:armhf depends on libssl3 (>= 3.0.0). 158s libpython3.12-minimal:armhf depends on libssl3 (>= 3.0.0). 158s libpython3.11-minimal:armhf depends on libssl3 (>= 3.0.0). 158s libnvme1 depends on libssl3 (>= 3.0.0). 158s libfido2-1:armhf depends on libssl3 (>= 3.0.0). 158s libcryptsetup12:armhf depends on libssl3 (>= 3.0.0). 158s dhcpcd-base depends on libssl3 (>= 3.0.0). 158s bind9-libs:armhf depends on libssl3 (>= 3.0.0). 158s 158s Removing libssl3:armhf (3.0.10-1ubuntu4) ... 158s Selecting previously unselected package libssl3t64:armhf. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 158s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ... 158s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ... 158s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 158s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ... 158s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 158s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ... 158s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 158s Setting up libudev1:armhf (255.4-1ubuntu5) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 158s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ... 159s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 159s Preparing to unpack .../udev_255.4-1ubuntu5_armhf.deb ... 159s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 159s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ... 159s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 159s Setting up libsystemd0:armhf (255.4-1ubuntu5) ... 159s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ... 159s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ... 159s Setting up systemd-dev (255.4-1ubuntu5) ... 159s Setting up systemd (255.4-1ubuntu5) ... 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 160s Preparing to unpack .../systemd-sysv_255.4-1ubuntu5_armhf.deb ... 160s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 160s Preparing to unpack .../libpam-systemd_255.4-1ubuntu5_armhf.deb ... 160s Unpacking libpam-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 160s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_armhf.deb ... 160s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 160s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ... 160s pam_namespace.service is a disabled or a static unit not running, not starting it. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 160s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_armhf.deb ... 161s Unpacking libpam-modules:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 161s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ... 161s Installing new version of config file /etc/security/namespace.init ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 161s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ... 161s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 161s Setting up libpam-runtime (1.5.3-5ubuntu3) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 161s Preparing to unpack .../dbus-user-session_1.14.10-4ubuntu2_armhf.deb ... 161s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 161s Preparing to unpack .../libapparmor1_4.0.0-beta3-0ubuntu2_armhf.deb ... 161s Unpacking libapparmor1:armhf (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 161s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ... 161s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 161s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 161s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ... 161s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 161s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 161s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ... 161s Unpacking libstdc++6:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 161s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 161s Preparing to unpack .../0-libexpat1_2.6.1-2_armhf.deb ... 161s Unpacking libexpat1:armhf (2.6.1-2) over (2.6.0-1) ... 161s Preparing to unpack .../1-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 161s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 161s Preparing to unpack .../2-dbus-bin_1.14.10-4ubuntu2_armhf.deb ... 161s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 161s Preparing to unpack .../3-dbus_1.14.10-4ubuntu2_armhf.deb ... 161s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 162s Preparing to unpack .../4-dbus-daemon_1.14.10-4ubuntu2_armhf.deb ... 162s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 162s Preparing to unpack .../5-libdbus-1-3_1.14.10-4ubuntu2_armhf.deb ... 162s Unpacking libdbus-1-3:armhf (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 162s Preparing to unpack .../6-libmount1_2.39.3-9ubuntu2_armhf.deb ... 162s Unpacking libmount1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 162s Setting up libmount1:armhf (2.39.3-9ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 162s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_armhf.deb ... 162s Unpacking libseccomp2:armhf (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ... 162s Setting up libseccomp2:armhf (2.5.5-1ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 162s Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_armhf.deb ... 162s Unpacking libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 162s Preparing to unpack .../libuuid1_2.39.3-9ubuntu2_armhf.deb ... 162s Unpacking libuuid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 162s Setting up libuuid1:armhf (2.39.3-9ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 162s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ... 162s Unpacking libcryptsetup12:armhf (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 162s Preparing to unpack .../1-libfdisk1_2.39.3-9ubuntu2_armhf.deb ... 162s Unpacking libfdisk1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 162s Preparing to unpack .../2-mount_2.39.3-9ubuntu2_armhf.deb ... 162s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 162s Preparing to unpack .../3-libblockdev-utils3_3.1.0-1build1_armhf.deb ... 162s Unpacking libblockdev-utils3:armhf (3.1.0-1build1) over (3.1.0-1) ... 162s Preparing to unpack .../4-libvolume-key1_0.3.12-7build1_armhf.deb ... 162s Unpacking libvolume-key1:armhf (0.3.12-7build1) over (0.3.12-5build2) ... 162s Preparing to unpack .../5-libjcat1_0.2.0-2build2_armhf.deb ... 162s Unpacking libjcat1:armhf (0.2.0-2build2) over (0.2.0-2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 162s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 162s Preparing to unpack .../parted_3.6-3.1build2_armhf.deb ... 162s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 162s Removing libparted2:armhf (3.6-3) ... 162s Selecting previously unselected package libparted2t64:armhf. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 162s Preparing to unpack .../00-libparted2t64_3.6-3.1build2_armhf.deb ... 162s Unpacking libparted2t64:armhf (3.6-3.1build2) ... 162s Preparing to unpack .../01-python3.12_3.12.2-4build3_armhf.deb ... 162s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 162s Preparing to unpack .../02-python3.12-minimal_3.12.2-4build3_armhf.deb ... 162s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 162s Preparing to unpack .../03-libpython3.12-stdlib_3.12.2-4build3_armhf.deb ... 162s Unpacking libpython3.12-stdlib:armhf (3.12.2-4build3) over (3.12.2-1) ... 163s Preparing to unpack .../04-libpython3.12-minimal_3.12.2-4build3_armhf.deb ... 163s Unpacking libpython3.12-minimal:armhf (3.12.2-4build3) over (3.12.2-1) ... 163s Preparing to unpack .../05-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 163s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 163s Preparing to unpack .../06-python3.11_3.11.8-1build4_armhf.deb ... 163s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 163s Preparing to unpack .../07-python3.11-minimal_3.11.8-1build4_armhf.deb ... 163s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 163s Preparing to unpack .../08-libpython3.11-stdlib_3.11.8-1build4_armhf.deb ... 163s Unpacking libpython3.11-stdlib:armhf (3.11.8-1build4) over (3.11.8-1) ... 163s Preparing to unpack .../09-libpython3.11-minimal_3.11.8-1build4_armhf.deb ... 163s Unpacking libpython3.11-minimal:armhf (3.11.8-1build4) over (3.11.8-1) ... 163s Preparing to unpack .../10-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ... 163s Unpacking libsqlite3-0:armhf (3.45.1-1ubuntu1) over (3.45.1-1) ... 163s Preparing to unpack .../11-libtext-iconv-perl_1.7-8build2_armhf.deb ... 163s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ... 164s Preparing to unpack .../12-libtext-charwidth-perl_0.04-11build2_armhf.deb ... 164s Unpacking libtext-charwidth-perl:armhf (0.04-11build2) over (0.04-11build1) ... 164s Preparing to unpack .../13-perl-modules-5.38_5.38.2-3.2_all.deb ... 164s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 164s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested: 164s perl depends on libperl5.38 (= 5.38.2-3). 164s 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78624 files and directories currently installed.) 165s Removing libperl5.38:armhf (5.38.2-3) ... 165s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested: 165s iproute2 depends on libdb5.3. 165s apt-utils depends on libdb5.3. 165s 165s Removing libdb5.3:armhf (5.3.28+dfsg2-4) ... 165s Selecting previously unselected package libdb5.3t64:armhf. 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78099 files and directories currently installed.) 165s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ... 165s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-6) ... 165s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_armhf.deb ... 165s Unpacking python3-gdbm:armhf (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 165s Preparing to unpack .../man-db_2.12.0-3build4_armhf.deb ... 165s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78105 files and directories currently installed.) 165s Removing libgdbm-compat4:armhf (1.23-5) ... 165s Removing libgdbm6:armhf (1.23-5) ... 165s Selecting previously unselected package libgdbm6t64:armhf. 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78095 files and directories currently installed.) 165s Preparing to unpack .../libgdbm6t64_1.23-5.1_armhf.deb ... 165s Unpacking libgdbm6t64:armhf (1.23-5.1) ... 165s Selecting previously unselected package libgdbm-compat4t64:armhf. 165s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ... 165s Unpacking libgdbm-compat4t64:armhf (1.23-5.1) ... 165s Selecting previously unselected package libperl5.38t64:armhf. 165s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ... 165s Unpacking libperl5.38t64:armhf (5.38.2-3.2) ... 165s Preparing to unpack .../perl_5.38.2-3.2_armhf.deb ... 165s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 165s Preparing to unpack .../perl-base_5.38.2-3.2_armhf.deb ... 165s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 165s Setting up perl-base (5.38.2-3.2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78626 files and directories currently installed.) 166s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_armhf.deb ... 166s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ... 166s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested: 166s libhogweed6:armhf depends on libnettle8. 166s libgnutls30:armhf depends on libnettle8 (>= 3.9~). 166s libcurl3-gnutls:armhf depends on libnettle8. 166s libarchive13:armhf depends on libnettle8. 166s 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78626 files and directories currently installed.) 166s Removing libnettle8:armhf (3.9.1-2) ... 166s Selecting previously unselected package libnettle8t64:armhf. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78619 files and directories currently installed.) 166s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ... 166s Unpacking libnettle8t64:armhf (3.9.1-2.2) ... 166s Setting up libnettle8t64:armhf (3.9.1-2.2) ... 166s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested: 166s libgnutls30:armhf depends on libhogweed6 (>= 3.6). 166s 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 166s Removing libhogweed6:armhf (3.9.1-2) ... 166s Selecting previously unselected package libhogweed6t64:armhf. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 166s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ... 166s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ... 166s Setting up libhogweed6t64:armhf (3.9.1-2.2) ... 166s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested: 166s libldap2:armhf depends on libgnutls30 (>= 3.8.2). 166s libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2). 166s fwupd depends on libgnutls30 (>= 3.7.3). 166s dirmngr depends on libgnutls30 (>= 3.8.1). 166s apt depends on libgnutls30 (>= 3.8.1). 166s 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78628 files and directories currently installed.) 166s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ... 166s Selecting previously unselected package libgnutls30t64:armhf. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78619 files and directories currently installed.) 166s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ... 166s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ... 166s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 166s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ... 166s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 166s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested: 166s libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0). 166s fwupd depends on libcurl3-gnutls (>= 7.63.0). 166s 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 166s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ... 166s Selecting previously unselected package libcurl3t64-gnutls:armhf. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78640 files and directories currently installed.) 166s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu8_armhf.deb ... 166s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ... 166s Preparing to unpack .../01-shared-mime-info_2.4-1build1_armhf.deb ... 166s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 166s Preparing to unpack .../02-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ... 166s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ... 166s Preparing to unpack .../03-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ... 166s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 166s Preparing to unpack .../04-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ... 166s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ... 166s Preparing to unpack .../05-python3-gi_3.47.0-3build1_armhf.deb ... 167s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 167s Preparing to unpack .../06-python3-dbus_1.3.2-5build2_armhf.deb ... 167s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 167s Selecting previously unselected package libnetplan1:armhf. 167s Preparing to unpack .../07-libnetplan1_1.0-1_armhf.deb ... 167s Unpacking libnetplan1:armhf (1.0-1) ... 167s Preparing to unpack .../08-python3-netplan_1.0-1_armhf.deb ... 167s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 167s Preparing to unpack .../09-netplan-generator_1.0-1_armhf.deb ... 167s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 167s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 167s Preparing to unpack .../10-initramfs-tools-bin_0.142ubuntu23_armhf.deb ... 167s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 167s Preparing to unpack .../11-initramfs-tools-core_0.142ubuntu23_all.deb ... 167s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 167s Preparing to unpack .../12-initramfs-tools_0.142ubuntu23_all.deb ... 167s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 167s Preparing to unpack .../13-netplan.io_1.0-1_armhf.deb ... 167s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 167s Preparing to unpack .../14-libxmlb2_0.3.15-1build1_armhf.deb ... 167s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ... 167s Preparing to unpack .../15-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ... 167s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 168s Preparing to unpack .../16-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ... 168s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ... 168s Preparing to unpack .../17-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ... 168s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 168s Preparing to unpack .../18-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ... 168s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ... 168s Preparing to unpack .../19-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ... 168s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78651 files and directories currently installed.) 168s Removing libnetplan0:armhf (0.107.1-3) ... 168s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested: 168s libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0). 168s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 168s libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56). 168s libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3). 168s libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3). 168s libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0). 168s libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0). 168s libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2). 168s fwupd depends on libglib2.0-0 (>= 2.79.0). 168s bolt depends on libglib2.0-0 (>= 2.56.0). 168s 168s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ... 168s Selecting previously unselected package libglib2.0-0t64:armhf. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 168s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ... 168s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 168s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm' 168s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ... 168s Preparing to unpack .../libfwupd2_1.9.15-2_armhf.deb ... 168s Unpacking libfwupd2:armhf (1.9.15-2) over (1.9.14-1) ... 168s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested: 168s fwupd depends on libarchive13 (>= 3.2.1). 168s 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 168s Removing libarchive13:armhf (3.7.2-1ubuntu2) ... 168s Selecting previously unselected package libarchive13t64:armhf. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78641 files and directories currently installed.) 168s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ... 168s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ... 168s Preparing to unpack .../fwupd_1.9.15-2_armhf.deb ... 168s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ... 168s Preparing to unpack .../apt-utils_2.7.14_armhf.deb ... 168s Unpacking apt-utils (2.7.14) over (2.7.12) ... 169s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested: 169s ubuntu-pro-client depends on libapt-pkg6.0 (>= 1.9~). 169s python3-apt depends on libapt-pkg6.0 (>= 2.7.11). 169s apt depends on libapt-pkg6.0 (>= 2.7.12). 169s 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78648 files and directories currently installed.) 169s Removing libapt-pkg6.0:armhf (2.7.12) ... 169s Selecting previously unselected package libapt-pkg6.0t64:armhf. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78599 files and directories currently installed.) 169s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ... 169s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ... 169s Setting up libapt-pkg6.0t64:armhf (2.7.14) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 169s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ... 169s Unpacking apt (2.7.14) over (2.7.12) ... 169s Setting up apt (2.7.14) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 170s Preparing to unpack .../ubuntu-pro-client-l10n_31.2.2_armhf.deb ... 170s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ... 170s Preparing to unpack .../ubuntu-pro-client_31.2.2_armhf.deb ... 170s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ... 170s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested: 170s gpgv depends on libnpth0 (>= 0.90). 170s gpgsm depends on libnpth0 (>= 0.90). 170s gpg-agent depends on libnpth0 (>= 0.90). 170s gpg depends on libnpth0 (>= 0.90). 170s dirmngr depends on libnpth0 (>= 0.90). 170s 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 170s Removing libnpth0:armhf (1.6-3build2) ... 170s Selecting previously unselected package libnpth0t64:armhf. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78644 files and directories currently installed.) 170s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ... 170s Unpacking libnpth0t64:armhf (1.6-3.1) ... 170s Setting up libnpth0t64:armhf (1.6-3.1) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 170s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s Setting up gpgv (2.4.4-2ubuntu15) ... 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 170s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ... 170s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 170s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested: 170s gpgconf depends on libreadline8 (>= 6.0). 170s gawk depends on libreadline8 (>= 6.0). 170s fdisk depends on libreadline8 (>= 6.0). 170s 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 170s Removing libreadline8:armhf (8.2-3) ... 170s Selecting previously unselected package libreadline8t64:armhf. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78638 files and directories currently installed.) 170s Preparing to unpack .../libreadline8t64_8.2-4_armhf.deb ... 170s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' 170s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' 170s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' 170s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' 171s Unpacking libreadline8t64:armhf (8.2-4) ... 171s Setting up libreadline8t64:armhf (8.2-4) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78658 files and directories currently installed.) 171s Preparing to unpack .../00-gawk_1%3a5.2.1-2build2_armhf.deb ... 171s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 171s Preparing to unpack .../01-fdisk_2.39.3-9ubuntu2_armhf.deb ... 171s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 171s Preparing to unpack .../02-gpgconf_2.4.4-2ubuntu15_armhf.deb ... 171s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 171s Preparing to unpack .../03-dirmngr_2.4.4-2ubuntu15_armhf.deb ... 171s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 171s Preparing to unpack .../04-gnupg_2.4.4-2ubuntu15_all.deb ... 171s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 171s Preparing to unpack .../05-python3-apt_2.7.7_armhf.deb ... 171s Unpacking python3-apt (2.7.7) over (2.7.6) ... 171s Preparing to unpack .../06-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ... 171s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 171s Preparing to unpack .../07-python3-yaml_6.0.1-2build1_armhf.deb ... 171s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 171s Preparing to unpack .../08-python-apt-common_2.7.7_all.deb ... 171s Unpacking python-apt-common (2.7.7) over (2.7.6) ... 171s Preparing to unpack .../09-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 171s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 172s Preparing to unpack .../10-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 172s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 172s Preparing to unpack .../11-dpkg_1.22.6ubuntu4_armhf.deb ... 172s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 172s Setting up dpkg (1.22.6ubuntu4) ... 172s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ... 172s Setting up libexpat1:armhf (2.6.1-2) ... 172s Setting up python3.12-minimal (3.12.2-4build3) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 174s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ... 174s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 174s Setting up python3-minimal (3.12.2-0ubuntu1) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 174s Preparing to unpack .../python3_3.12.2-0ubuntu1_armhf.deb ... 174s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 174s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ... 174s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 174s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_armhf.deb ... 174s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 174s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 174s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ... 174s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 175s Preparing to unpack .../1-groff-base_1.23.0-3build1_armhf.deb ... 175s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 175s Preparing to unpack .../2-readline-common_8.2-4_all.deb ... 175s Unpacking readline-common (8.2-4) over (8.2-3) ... 175s Selecting previously unselected package libgpgme11t64:armhf. 175s Preparing to unpack .../3-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ... 175s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ... 175s Preparing to unpack .../4-libblockdev-crypto3_3.1.0-1build1_armhf.deb ... 175s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ... 175s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 175s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 175s Preparing to unpack .../6-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 175s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 175s Preparing to unpack .../7-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ... 175s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 175s Preparing to unpack .../8-libblockdev-fs3_3.1.0-1build1_armhf.deb ... 175s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ... 175s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 175s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 175s 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78662 files and directories currently installed.) 175s Removing libreiserfscore0 (1:3.6.27-7) ... 175s Selecting previously unselected package libreiserfscore0t64. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78657 files and directories currently installed.) 175s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ... 175s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 175s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ... 175s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 175s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested: 175s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 175s 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78663 files and directories currently installed.) 175s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ... 175s Selecting previously unselected package libext2fs2t64:armhf. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78656 files and directories currently installed.) 176s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 176s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' 176s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 176s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' 176s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 176s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ... 176s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ... 176s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78672 files and directories currently installed.) 176s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 176s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 176s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ... 176s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ... 176s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ... 176s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ... 176s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ... 176s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78672 files and directories currently installed.) 176s Removing libnvme1 (1.8-2) ... 176s Selecting previously unselected package libnvme1t64. 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78665 files and directories currently installed.) 176s Preparing to unpack .../0-libnvme1t64_1.8-3_armhf.deb ... 176s Unpacking libnvme1t64 (1.8-3) ... 176s Preparing to unpack .../1-libblockdev-part3_3.1.0-1build1_armhf.deb ... 176s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ... 176s Preparing to unpack .../2-libblockdev-swap3_3.1.0-1build1_armhf.deb ... 176s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ... 176s Preparing to unpack .../3-libblockdev3_3.1.0-1build1_armhf.deb ... 176s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ... 176s Preparing to unpack .../4-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ... 176s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ... 176s Preparing to unpack .../5-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ... 176s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 176s Preparing to unpack .../6-libbpf1_1%3a1.3.0-2build1_armhf.deb ... 176s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ... 176s Preparing to unpack .../7-iproute2_6.1.0-1ubuntu5_armhf.deb ... 176s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 176s Removing libelf1:armhf (0.190-1) ... 177s Selecting previously unselected package libelf1t64:armhf. 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78668 files and directories currently installed.) 177s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ... 177s Unpacking libelf1t64:armhf (0.190-1.1build2) ... 177s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 177s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 177s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ... 177s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 177s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ... 177s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ... 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 177s Removing libtirpc3:armhf (1.3.4+ds-1build1) ... 177s Selecting previously unselected package libtirpc3t64:armhf. 177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78667 files and directories currently installed.) 177s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ... 177s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' 177s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 177s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ... 177s Preparing to unpack .../01-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ... 177s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 177s Preparing to unpack .../02-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ... 177s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ... 177s Preparing to unpack .../03-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 177s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 177s Preparing to unpack .../04-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ... 177s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ... 177s Preparing to unpack .../05-libnghttp2-14_1.59.0-1build1_armhf.deb ... 177s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ... 177s Preparing to unpack .../06-libssh-4_0.10.6-2build1_armhf.deb ... 177s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ... 177s Preparing to unpack .../07-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ... 177s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ... 177s Preparing to unpack .../08-libgusb2_0.4.8-1build1_armhf.deb ... 177s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ... 177s Preparing to unpack .../09-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ... 177s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ... 177s Preparing to unpack .../10-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ... 177s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 177s Preparing to unpack .../11-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 177s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 177s Preparing to unpack .../12-libibverbs1_50.0-2build1_armhf.deb ... 177s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ... 177s Preparing to unpack .../13-libfido2-1_1.14.0-1build1_armhf.deb ... 177s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ... 177s Preparing to unpack .../14-libproc2-0_2%3a4.0.4-4ubuntu2_armhf.deb ... 177s Unpacking libproc2-0:armhf (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 177s Preparing to unpack .../15-procps_2%3a4.0.4-4ubuntu2_armhf.deb ... 177s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 178s Preparing to unpack .../16-coreutils_9.4-3ubuntu3_armhf.deb ... 178s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 178s Setting up coreutils (9.4-3ubuntu3) ... 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78679 files and directories currently installed.) 178s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ... 178s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 178s Setting up util-linux (2.39.3-9ubuntu2) ... 179s fstrim.service is a disabled or a static unit not running, not starting it. 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78679 files and directories currently installed.) 179s Removing libatm1:armhf (1:2.5.1-5) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78674 files and directories currently installed.) 179s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ... 179s Unpacking file (1:5.45-3) over (1:5.45-2) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78674 files and directories currently installed.) 179s Removing libmagic1:armhf (1:5.45-2) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78664 files and directories currently installed.) 179s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ... 179s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 179s Selecting previously unselected package libmagic1t64:armhf. 179s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ... 179s Unpacking libmagic1t64:armhf (1:5.45-3) ... 179s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ... 179s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78675 files and directories currently installed.) 179s Removing libpng16-16:armhf (1.6.43-1) ... 179s Selecting previously unselected package libpng16-16t64:armhf. 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78665 files and directories currently installed.) 179s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ... 179s Unpacking libpng16-16t64:armhf (1.6.43-3) ... 179s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ... 179s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 179s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ... 179s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 179s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ... 179s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78676 files and directories currently installed.) 180s Removing libuv1:armhf (1.48.0-1) ... 180s Selecting previously unselected package libuv1t64:armhf. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78671 files and directories currently installed.) 180s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ... 180s Unpacking libuv1t64:armhf (1.48.0-1.1) ... 180s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ... 180s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 180s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ... 180s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ... 180s Setting up libdebconfclient0:armhf (0.271ubuntu2) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 180s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 180s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 180s Setting up libsemanage-common (3.5-1build4) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 180s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ... 180s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ... 180s Setting up libsemanage2:armhf (3.5-1build4) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 180s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ... 180s Unpacking install-info (7.1-3build1) over (7.1-3) ... 180s Setting up install-info (7.1-3build1) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 180s Preparing to unpack .../00-gcc-13-base_13.2.0-21ubuntu1_armhf.deb ... 180s Unpacking gcc-13-base:armhf (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ... 180s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 180s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 180s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ... 180s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 180s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_armhf.deb ... 180s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 180s Preparing to unpack .../04-krb5-locales_1.20.1-6ubuntu1_all.deb ... 180s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 180s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 180s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 180s Preparing to unpack .../06-libslang2_2.3.3-3build1_armhf.deb ... 180s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ... 180s Preparing to unpack .../07-rsyslog_8.2312.0-3ubuntu7_armhf.deb ... 180s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ... 181s Preparing to unpack .../08-vim-tiny_2%3a9.1.0016-1ubuntu6_armhf.deb ... 181s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 181s Preparing to unpack .../09-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ... 181s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 181s Selecting previously unselected package xdg-user-dirs. 181s Preparing to unpack .../10-xdg-user-dirs_0.18-1_armhf.deb ... 181s Unpacking xdg-user-dirs (0.18-1) ... 181s Preparing to unpack .../11-xxd_2%3a9.1.0016-1ubuntu6_armhf.deb ... 181s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 181s Preparing to unpack .../12-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ... 181s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 182s Preparing to unpack .../13-ftp_20230507-2build1_all.deb ... 182s Unpacking ftp (20230507-2build1) over (20230507-2) ... 182s Preparing to unpack .../14-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ... 182s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 182s Preparing to unpack .../15-info_7.1-3build1_armhf.deb ... 182s Unpacking info (7.1-3build1) over (7.1-3) ... 182s Preparing to unpack .../16-libxmuu1_2%3a1.1.3-3build1_armhf.deb ... 182s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ... 182s Preparing to unpack .../17-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ... 182s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 182s Preparing to unpack .../18-mtr-tiny_0.95-1.1build1_armhf.deb ... 182s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 182s Preparing to unpack .../19-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ... 182s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 182s Preparing to unpack .../20-plymouth_24.004.60-1ubuntu6_armhf.deb ... 182s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 182s Preparing to unpack .../21-psmisc_23.7-1_armhf.deb ... 182s Unpacking psmisc (23.7-1) over (23.6-2) ... 183s Preparing to unpack .../22-telnet_0.17+2.5-3ubuntu3_all.deb ... 183s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 183s Preparing to unpack .../23-usb.ids_2024.03.18-1_all.deb ... 183s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 183s Preparing to unpack .../24-xz-utils_5.6.0-0.2_armhf.deb ... 183s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 183s Preparing to unpack .../25-libctf0_2.42-4ubuntu1_armhf.deb ... 183s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../26-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ... 183s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../27-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ... 183s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../28-libbinutils_2.42-4ubuntu1_armhf.deb ... 183s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../29-binutils_2.42-4ubuntu1_armhf.deb ... 183s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../30-binutils-common_2.42-4ubuntu1_armhf.deb ... 183s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../31-libsframe1_2.42-4ubuntu1_armhf.deb ... 183s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 183s Preparing to unpack .../32-bolt_0.9.6-2build1_armhf.deb ... 183s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 183s Preparing to unpack .../33-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ... 183s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 183s Preparing to unpack .../34-dpkg-dev_1.22.6ubuntu4_all.deb ... 183s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 184s Preparing to unpack .../35-libdpkg-perl_1.22.6ubuntu4_all.deb ... 184s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 184s Preparing to unpack .../36-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 184s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 184s Preparing to unpack .../37-ibverbs-providers_50.0-2build1_armhf.deb ... 184s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ... 184s Preparing to unpack .../38-jq_1.7.1-3_armhf.deb ... 184s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 184s Preparing to unpack .../39-libjq1_1.7.1-3_armhf.deb ... 184s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ... 184s Selecting previously unselected package libatm1t64:armhf. 184s Preparing to unpack .../40-libatm1t64_1%3a2.5.1-5.1_armhf.deb ... 184s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ... 184s Preparing to unpack .../41-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ... 184s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 184s Preparing to unpack .../42-libftdi1-2_1.5-6build4_armhf.deb ... 184s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ... 184s Preparing to unpack .../43-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 184s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 184s Preparing to unpack .../44-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 184s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 184s Preparing to unpack .../45-python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 184s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 184s Preparing to unpack .../46-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 184s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 184s Preparing to unpack .../47-python3-pyrsistent_0.20.0-1build1_armhf.deb ... 185s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ... 185s Preparing to unpack .../48-python3-typing-extensions_4.10.0-1_all.deb ... 185s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 185s Preparing to unpack .../49-kpartx_0.9.4-5ubuntu6_armhf.deb ... 185s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 185s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 185s Setting up motd-news-config (13ubuntu8) ... 185s Setting up libtext-iconv-perl:armhf (1.7-8build2) ... 185s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ... 185s Setting up libibverbs1:armhf (50.0-2build1) ... 185s Setting up systemd-sysv (255.4-1ubuntu5) ... 185s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ... 185s Setting up libatm1t64:armhf (1:2.5.1-5.1) ... 185s Setting up libgdbm6t64:armhf (1.23-5.1) ... 185s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 185s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ... 185s Setting up xdg-user-dirs (0.18-1) ... 185s Setting up ibverbs-providers:armhf (50.0-2build1) ... 185s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 185s Setting up libmagic-mgc (1:5.45-3) ... 185s Setting up gawk (1:5.2.1-2build2) ... 185s Setting up psmisc (23.7-1) ... 185s Setting up libjq1:armhf (1.7.1-3) ... 185s Setting up libtirpc-common (1.3.4+ds-1.1) ... 185s Setting up libbrotli1:armhf (1.1.0-2build1) ... 185s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ... 185s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ... 185s Setting up libuv1t64:armhf (1.48.0-1.1) ... 185s Setting up libmagic1t64:armhf (1:5.45-3) ... 185s Setting up rsyslog (8.2312.0-3ubuntu7) ... 185s info: The user `syslog' is already a member of `adm'. 186s apparmor_parser: Unable to replace "rsyslogd". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 186s 187s Setting up binutils-common:armhf (2.42-4ubuntu1) ... 187s Setting up libpsl5t64:armhf (0.21.2-1.1) ... 187s Setting up libnghttp2-14:armhf (1.59.0-1build1) ... 187s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 187s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ... 187s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ... 187s Setting up krb5-locales (1.20.1-6ubuntu1) ... 187s Setting up file (1:5.45-3) ... 187s Setting up kmod (31+20240202-2ubuntu4) ... 187s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 187s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 187s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ... 187s Setting up xxd (2:9.1.0016-1ubuntu6) ... 187s Setting up libsframe1:armhf (2.42-4ubuntu1) ... 187s Setting up libelf1t64:armhf (0.190-1.1build2) ... 187s Setting up libkrb5support0:armhf (1.20.1-6ubuntu1) ... 187s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 187s Setting up eject (2.39.3-9ubuntu2) ... 187s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 187s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 187s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 187s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 187s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 187s Installing new version of config file /etc/apparmor.d/code ... 187s Installing new version of config file /etc/apparmor.d/firefox ... 187s apparmor_parser: Unable to replace "lsb_release". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 187s 187s apparmor_parser: Unable to replace "kmod". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 187s 187s apparmor_parser: Unable to replace "nvidia_modprobe". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 187s 188s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory 188s Reloading AppArmor profiles 188s /sbin/apparmor_parser: Unable to replace "1password". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "Discord". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "MongoDB Compass". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "brave". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "buildah". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "busybox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "cam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "ch-checkns". /sbin/apparmor_parser: Unable to replace "chrome". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "ch-run". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "crun". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "devhelp". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "vscode". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "element-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "epiphany". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "firefox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "evolution". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "flatpak". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "geary". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "github-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "goldendict". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "kchmviewer". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "keybase". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "ipa_verify". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "libcamerify". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lc-compliance". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "loupe". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "linux-sandbox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-create". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-attach". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-execute". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-stop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-unshare". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lxc-destroy". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "mmdebstrap". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "notepadqq". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "obsidian". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "msedge". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "opera". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "pageedit". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "opam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "podman". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "polypane". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "privacybrowser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "qmapshack". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "nautilus". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "qcam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "rootlesskit". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "rpm". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "rssguard". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "runc". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "qutebrowser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-adduser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-apt". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "plasmashell". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-abort". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-clean". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-hold". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-unhold". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "scide". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-shell". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "sbuild-update". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "signal-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "slack". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "surfshark". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "slirp4netns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "steam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "systemd-coredump". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "trinity". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "toybox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "thunderbird". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "tup". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "stress-ng". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "userbindmount". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "lsb_release". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "unprivileged_userns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 188s /sbin/apparmor_parser: Unable to replace "uwsgi-core". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 188s 189s /sbin/apparmor_parser: Unable to replace "vdens". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "virtiofsd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "vivaldi-bin". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "vpnns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "wpcom". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "kmod". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "unix-chkpwd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "rsyslogd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "/usr/bin/man". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s /sbin/apparmor_parser: Unable to replace "tcpdump". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 189s 189s Error: At least one profile failed to load 189s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ... 189s No schema files found: doing nothing. 189s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 189s Setting up vim-common (2:9.1.0016-1ubuntu6) ... 189s Setting up gcc-13-base:armhf (13.2.0-21ubuntu1) ... 189s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ... 189s Setting up libslang2:armhf (2.3.3-3build1) ... 189s Setting up libnvme1t64 (1.8-3) ... 189s Setting up mtr-tiny (0.95-1.1build1) ... 189s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 189s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ... 189s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ... 189s Setting up xz-utils (5.6.0-0.2) ... 189s Setting up perl-modules-5.38 (5.38.2-3.2) ... 189s Setting up libproc2-0:armhf (2:4.0.4-4ubuntu2) ... 189s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ... 189s Setting up libpng16-16t64:armhf (1.6.43-3) ... 189s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 189s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ... 189s Setting up udev (255.4-1ubuntu5) ... 190s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ... 190s Setting up usb.ids (2024.03.18-1) ... 190s Setting up sudo (1.9.15p5-3ubuntu3) ... 190s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 191s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ... 191s Setting up libk5crypto3:armhf (1.20.1-6ubuntu1) ... 191s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 191s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ... 191s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ... 191s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ... 191s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ... 191s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ... 191s Setting up python-apt-common (2.7.7) ... 191s Setting up mount (2.39.3-9ubuntu2) ... 191s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 191s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 192s uuidd.service is a disabled or a static unit not running, not starting it. 192s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ... 192s Setting up groff-base (1.23.0-3build1) ... 192s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ... 192s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 192s Setting up kpartx (0.9.4-5ubuntu6) ... 192s Setting up jq (1.7.1-3) ... 192s Setting up procps (2:4.0.4-4ubuntu2) ... 192s Setting up gpgconf (2.4.4-2ubuntu15) ... 192s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ... 192s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ... 192s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ... 192s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 192s Setting up libkrb5-3:armhf (1.20.1-6ubuntu1) ... 192s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ... 192s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ... 192s Setting up libperl5.38t64:armhf (5.38.2-3.2) ... 192s Setting up tnftp (20230507-2build1) ... 192s Setting up libbinutils:armhf (2.42-4ubuntu1) ... 192s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 192s Setting up libfido2-1:armhf (1.14.0-1build1) ... 192s Setting up openssl (3.0.13-0ubuntu2) ... 192s Setting up readline-common (8.2-4) ... 192s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ... 192s Setting up libxmuu1:armhf (2:1.1.3-3build1) ... 192s Setting up dbus-bin (1.14.10-4ubuntu2) ... 192s Setting up info (7.1-3build1) ... 192s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ... 192s Setting up gpg (2.4.4-2ubuntu15) ... 192s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ... 192s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ... 192s Setting up libbpf1:armhf (1:1.3.0-2build1) ... 192s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ... 192s Setting up rsync (3.2.7-1build1) ... 193s rsync.service is a disabled or a static unit not running, not starting it. 193s Setting up libudisks2-0:armhf (2.10.1-6) ... 193s Setting up bolt (0.9.6-2build1) ... 193s bolt.service is a disabled or a static unit not running, not starting it. 193s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 193s Setting up initramfs-tools-bin (0.142ubuntu23) ... 193s Setting up libctf0:armhf (2.42-4ubuntu1) ... 193s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 193s Setting up python3.11-minimal (3.11.8-1build4) ... 195s Setting up tcpdump (4.99.4-3ubuntu2) ... 195s apparmor_parser: Unable to replace "tcpdump". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 195s 195s Setting up apt-utils (2.7.14) ... 195s Setting up gpg-agent (2.4.4-2ubuntu15) ... 195s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ... 195s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ... 195s Setting up wget (1.21.4-1ubuntu2) ... 195s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ... 195s Setting up plymouth (24.004.60-1ubuntu6) ... 195s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 196s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 196s Setting up libxmlb2:armhf (0.3.15-1build1) ... 196s Setting up btrfs-progs (6.6.3-1.1build1) ... 196s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ... 196s Setting up python3.12 (3.12.2-4build3) ... 198s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ... 198s Setting up gpgsm (2.4.4-2ubuntu15) ... 198s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 198s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 198s update-initramfs: deferring update (trigger activated) 198s e2scrub_all.service is a disabled or a static unit not running, not starting it. 198s Setting up libparted2t64:armhf (3.6-3.1build2) ... 198s Setting up linux-headers-generic (6.8.0-20.20+1) ... 198s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 198s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 198s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ... 198s Setting up libnetplan1:armhf (1.0-1) ... 198s Setting up man-db (2.12.0-3build4) ... 199s Updating database of manual pages ... 200s apparmor_parser: Unable to replace "/usr/bin/man". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 200s 201s man-db.service is a disabled or a static unit not running, not starting it. 201s Setting up libblockdev3:armhf (3.1.0-1build1) ... 201s Setting up fdisk (2.39.3-9ubuntu2) ... 201s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ... 201s Setting up libblockdev-part3:armhf (3.1.0-1build1) ... 201s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ... 201s Setting up libftdi1-2:armhf (1.5-6build4) ... 201s Setting up perl (5.38.2-3.2) ... 201s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 201s update-initramfs: deferring update (trigger activated) 201s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ... 201s Setting up dbus (1.14.10-4ubuntu2) ... 201s A reboot is required to replace the running dbus-daemon. 201s Please reboot the system when convenient. 201s Setting up shared-mime-info (2.4-1build1) ... 202s Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) ... 202s Setting up ftp (20230507-2build1) ... 202s Setting up keyboxd (2.4.4-2ubuntu15) ... 202s Setting up libdpkg-perl (1.22.6ubuntu4) ... 202s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ... 202s Setting up libssh-4:armhf (0.10.6-2build1) ... 202s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ... 202s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ... 202s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ... 202s Setting up netplan-generator (1.0-1) ... 202s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 202s Setting up initramfs-tools-core (0.142ubuntu23) ... 202s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ... 202s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ... 202s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ... 202s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ... 202s Setting up systemd-resolved (255.4-1ubuntu5) ... 204s Setting up python3.11 (3.11.8-1build4) ... 205s Setting up telnet (0.17+2.5-3ubuntu3) ... 205s Setting up initramfs-tools (0.142ubuntu23) ... 205s update-initramfs: deferring update (trigger activated) 205s Setting up libcurl4t64:armhf (8.5.0-2ubuntu8) ... 205s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ... 205s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ... 205s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 205s Setting up iproute2 (6.1.0-1ubuntu5) ... 205s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 205s Setting up libgusb2:armhf (0.4.8-1build1) ... 205s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ... 205s Setting up parted (3.6-3.1build2) ... 205s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ... 205s Setting up python3 (3.12.2-0ubuntu1) ... 206s Setting up binutils (2.42-4ubuntu1) ... 206s Setting up libjcat1:armhf (0.2.0-2build2) ... 206s Setting up dpkg-dev (1.22.6ubuntu4) ... 206s Setting up dirmngr (2.4.4-2ubuntu15) ... 206s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 206s Setting up python3-cryptography (41.0.7-4build2) ... 206s Setting up python3-gi (3.47.0-3build1) ... 206s Setting up python3-typing-extensions (4.10.0-1) ... 206s Setting up lsof (4.95.0-1build2) ... 206s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ... 207s Setting up libnsl2:armhf (1.3.0-3build2) ... 207s Setting up gnupg (2.4.4-2ubuntu15) ... 207s Setting up python3-netplan (1.0-1) ... 207s Setting up curl (8.5.0-2ubuntu8) ... 207s Setting up libvolume-key1:armhf (0.3.12-7build1) ... 207s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 207s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 207s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 207s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 208s python3.12: can't get files for byte-compilation 208s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 208s Setting up python3-dbus (1.3.2-5build2) ... 208s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 208s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 208s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 209s Replacing config file /etc/ssh/sshd_config with new version 210s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 211s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ... 211s Setting up python3-gdbm:armhf (3.12.2-3ubuntu1.1) ... 211s Setting up python3-apt (2.7.7) ... 212s Setting up libfwupd2:armhf (1.9.15-2) ... 212s Setting up python3-yaml (6.0.1-2build1) ... 212s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 212s Setting up netplan.io (1.0-1) ... 212s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 212s Setting up ubuntu-pro-client (31.2.2) ... 212s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 212s 213s Setting up fwupd (1.9.15-2) ... 214s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 214s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 214s fwupd.service is a disabled or a static unit not running, not starting it. 214s Setting up ubuntu-pro-client-l10n (31.2.2) ... 214s Setting up udisks2 (2.10.1-6) ... 214s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 214s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 214s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 214s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 214s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 214s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 214s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 214s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 214s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 214s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 214s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 214s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 215s Processing triggers for ufw (0.36.2-5) ... 215s Processing triggers for systemd (255.4-1ubuntu5) ... 215s Processing triggers for install-info (7.1-3build1) ... 215s Processing triggers for libc-bin (2.39-0ubuntu6) ... 215s Processing triggers for initramfs-tools (0.142ubuntu23) ... 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 218s The following packages will be REMOVED: 218s linux-headers-6.8.0-11* python3-distutils* python3-lib2to3* 218s 0 upgraded, 0 newly installed, 3 to remove and 1 not upgraded. 218s After this operation, 86.5 MB disk space will be freed. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 219s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ... 219s Removing python3-distutils (3.12.2-3ubuntu1.1) ... 220s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ... 222s autopkgtest [12:46:40]: rebooting testbed after setup commands that affected boot 264s autopkgtest [12:47:22]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024 290s autopkgtest [12:47:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-survey 300s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-survey 4.2-1-1 (dsc) [2212 B] 300s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-survey 4.2-1-1 (tar) [2153 kB] 300s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-survey 4.2-1-1 (diff) [4304 B] 301s gpgv: Signature made Wed Jun 28 12:15:39 2023 UTC 301s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 301s gpgv: issuer "tille@debian.org" 301s gpgv: Can't check signature: No public key 301s dpkg-source: warning: cannot verify inline signature for ./r-cran-survey_4.2-1-1.dsc: no acceptable signature found 301s autopkgtest [12:47:59]: testing package r-cran-survey version 4.2-1-1 303s autopkgtest [12:48:01]: build not needed 306s autopkgtest [12:48:04]: test run-unit-test: preparing testbed 319s Reading package lists... 320s Building dependency tree... 320s Reading state information... 320s Starting pkgProblemResolver with broken count: 0 320s Starting 2 pkgProblemResolver with broken count: 0 320s Done 321s The following additional packages will be installed: 321s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 321s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 321s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 321s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 321s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 321s liblapack3 liblerc4 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0 321s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 321s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 321s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler node-normalize.css 321s r-base-core r-cran-abind r-cran-aer r-cran-backports r-cran-bit r-cran-bit64 321s r-cran-blob r-cran-boot r-cran-brio r-cran-broom r-cran-cachem r-cran-callr 321s r-cran-car r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class 321s r-cran-cli r-cran-clipr r-cran-clock r-cran-codetools r-cran-colorspace 321s r-cran-conquer r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 321s r-cran-dbi r-cran-desc r-cran-diagram r-cran-diffobj r-cran-digest 321s r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi 321s r-cran-farver r-cran-fastmap r-cran-forcats r-cran-foreach r-cran-foreign 321s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 321s r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gtable 321s r-cran-hardhat r-cran-haven r-cran-highr r-cran-hms r-cran-ipred 321s r-cran-isoband r-cran-iterators r-cran-jsonlite r-cran-kernsmooth 321s r-cran-knitr r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle 321s r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-lubridate 321s r-cran-magrittr r-cran-maptools r-cran-mass r-cran-matrix 321s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv 321s r-cran-minqa r-cran-mitools r-cran-modelmetrics r-cran-munsell r-cran-nlme 321s r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openxlsx r-cran-parallelly 321s r-cran-pbkrtest r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 321s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-praise 321s r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim 321s r-cran-progress r-cran-progressr r-cran-proxy r-cran-ps r-cran-purrr 321s r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 321s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen 321s r-cran-readr r-cran-readxl r-cran-recipes r-cran-rematch r-cran-rematch2 321s r-cran-reshape2 r-cran-rio r-cran-rlang r-cran-rpart r-cran-rprojroot 321s r-cran-rsqlite r-cran-sandwich r-cran-scales r-cran-shape r-cran-sp 321s r-cran-sparsem r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr 321s r-cran-survey r-cran-survival r-cran-testthat r-cran-tibble r-cran-tidyr 321s r-cran-tidyselect r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 321s r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr 321s r-cran-writexl r-cran-xfun r-cran-yaml r-cran-zip r-cran-zoo unzip 321s x11-common xdg-utils zip 321s Suggested packages: 321s fonts-mathjax-extras fonts-stix libjs-mathjax-doc tcl8.6 tk8.6 321s libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 321s r-cran-roxygen2 r-cran-rmarkdown r-cran-ff r-cran-covr r-cran-bbmle 321s r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-emmeans r-cran-epir 321s r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm r-cran-hmisc 321s r-cran-irlba r-cran-interp r-cran-ks r-cran-lavaan r-cran-leaps 321s r-cran-lsmeans r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata 321s r-cran-multcomp r-cran-network r-cran-ordinal r-cran-plm r-cran-psych 321s r-cran-robust r-cran-robustbase r-cran-rsample r-cran-spdep 321s r-cran-spatialreg r-cran-spelling r-cran-systemfit r-cran-tseries 321s r-cran-bradleyterry2 r-cran-ellipse r-cran-mlbench r-cran-party r-cran-pls 321s r-cran-randomforest r-cran-rann r-cran-rstudioapi r-cran-slider 321s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs 321s r-cran-png r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-tinytest 321s r-cran-markdown r-cran-th.data r-cran-magick r-cran-sf r-cran-getopt 321s r-cran-rgeos r-cran-spatstat.geom r-cran-raster r-cran-polyclip 321s r-cran-plotrix r-cran-spatstat.linnet r-cran-spatstat.utils r-cran-spatstat 321s r-cran-httr r-cran-rodbc r-cran-formattable r-cran-nanotime 321s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-inline r-cran-hexbin 321s r-cran-bench r-cran-here r-cran-htmltools r-cran-runit 321s Recommended packages: 321s javascript-common r-recommended r-base-dev r-doc-html r-cran-dynlm 321s r-cran-effects r-cran-fgarch r-cran-forecast r-cran-plm r-cran-pscl 321s r-cran-rgl r-cran-rocr r-cran-scatterplot3d r-cran-strucchange 321s r-cran-systemfit r-cran-tseries r-cran-urca r-cran-covr r-cran-mockery 321s r-cran-spelling r-cran-earth r-cran-mda r-cran-mlmetrics r-cran-fastica 321s r-cran-kernlab r-cran-themis r-cran-htmltools r-cran-htmlwidgets 321s r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-decor 321s r-cran-lobstr r-cran-later r-cran-httpuv r-cran-webutils r-cran-xts 321s r-cran-nanotime r-cran-gh r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql 321s r-cran-unitizer r-cran-rhpcblasctl r-cran-r.rsp r-cran-markdown 321s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 321s r-cran-profvis r-cran-ragg r-cran-sf r-cran-svglite r-cran-vdiffr 321s r-cran-xml2 r-cran-devtools r-cran-modeldata r-cran-roxygen2 r-cran-usethis 321s r-cran-testit r-cran-mlbench r-cran-httr r-cran-bslib r-cran-formatr 321s r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate 321s r-cran-sass r-cran-tikzdevice r-cran-tinytex r-cran-webshot 321s node-highlight.js r-cran-ellipse r-cran-fields r-cran-geepack r-bioc-graph 321s r-cran-bookdown r-cran-igraph r-cran-lavasearch2 r-cran-mets r-cran-optimx 321s r-cran-polycor r-cran-lintr r-cran-tidyverse r-cran-base64enc 321s r-cran-r.devices r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes 321s r-cran-doparallel r-cran-itertools r-cran-logcondens r-cran-webfakes 321s r-cran-pbmcapply r-cran-furrr r-cran-shiny r-cran-commonmark r-cran-cba 321s r-cran-pingr r-cran-ddalpha r-cran-dials r-cran-rann r-cran-rcpproll 321s r-cran-rsample r-cran-rspectra r-cran-splines2 r-cran-dbitest r-cran-gert 321s r-cran-rvest r-cran-dichromat r-cran-gstat r-cran-deldir r-cran-terra 321s r-cran-raster r-cran-setrng r-cran-formattable r-cran-pkgdown r-cran-zeallot 321s r-cran-mime r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl 321s libx11-protocol-perl x11-utils x11-xserver-utils 321s The following NEW packages will be installed: 321s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 321s fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax libblas3 321s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 321s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 321s libjpeg8 libjs-bootstrap libjs-highlight.js libjs-jquery 321s libjs-jquery-datatables libjs-mathjax liblapack3 liblerc4 libnlopt0 321s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 321s libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 321s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 321s libxss1 libxt6t64 littler node-normalize.css r-base-core r-cran-abind 321s r-cran-aer r-cran-backports r-cran-bit r-cran-bit64 r-cran-blob r-cran-boot 321s r-cran-brio r-cran-broom r-cran-cachem r-cran-callr r-cran-car 321s r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class r-cran-cli 321s r-cran-clipr r-cran-clock r-cran-codetools r-cran-colorspace r-cran-conquer 321s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 321s r-cran-desc r-cran-diagram r-cran-diffobj r-cran-digest r-cran-dplyr 321s r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 321s r-cran-fastmap r-cran-forcats r-cran-foreach r-cran-foreign r-cran-formula 321s r-cran-fs r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 321s r-cran-globals r-cran-glue r-cran-gower r-cran-gtable r-cran-hardhat 321s r-cran-haven r-cran-highr r-cran-hms r-cran-ipred r-cran-isoband 321s r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 321s r-cran-labeling r-cran-lattice r-cran-lava r-cran-lifecycle r-cran-listenv 321s r-cran-littler r-cran-lme4 r-cran-lmtest r-cran-lubridate r-cran-magrittr 321s r-cran-maptools r-cran-mass r-cran-matrix r-cran-matrixmodels 321s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-minqa r-cran-mitools 321s r-cran-modelmetrics r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet 321s r-cran-numderiv r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest 321s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 321s r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-praise r-cran-prettyunits 321s r-cran-proc r-cran-processx r-cran-prodlim r-cran-progress r-cran-progressr 321s r-cran-proxy r-cran-ps r-cran-purrr r-cran-quantreg r-cran-r.methodss3 321s r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 321s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-readr r-cran-readxl 321s r-cran-recipes r-cran-rematch r-cran-rematch2 r-cran-reshape2 r-cran-rio 321s r-cran-rlang r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-sandwich 321s r-cran-scales r-cran-shape r-cran-sp r-cran-sparsem r-cran-squarem 321s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survey r-cran-survival 321s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 321s r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vctrs 321s r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr r-cran-writexl 321s r-cran-xfun r-cran-yaml r-cran-zip r-cran-zoo unzip x11-common xdg-utils zip 321s 0 upgraded, 211 newly installed, 0 to remove and 1 not upgraded. 321s Need to get 159 MB/159 MB of archives. 321s After this operation, 310 MB of additional disk space will be used. 321s Get:1 /tmp/autopkgtest.Cwxubq/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 321s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfreetype6 armhf 2.13.2+dfsg-1build2 [331 kB] 322s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 322s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 322s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu1 [37.4 kB] 322s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu1 [113 kB] 322s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig armhf 2.15.0-1.1ubuntu1 [189 kB] 322s Get:8 http://ftpmaster.internal/ubuntu noble/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 322s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 322s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB] 322s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB] 322s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] 322s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] 322s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] 322s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcairo2 armhf 1.18.0-1ubuntu1 [482 kB] 322s Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libdatrie1 armhf 0.2.13-3 [16.9 kB] 322s Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB] 322s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran5 armhf 14-20240315-1ubuntu1 [312 kB] 322s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240315-1ubuntu1 [125 kB] 322s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libgraphite2-3 armhf 1.3.14-2 [72.7 kB] 322s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libharfbuzz0b armhf 8.3.0-2build1 [446 kB] 322s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] 322s Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] 322s Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] 322s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 322s Get:26 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 322s Get:27 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 322s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 322s Get:29 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 322s Get:30 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB] 322s Get:31 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB] 322s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libthai-data all 0.1.29-2 [158 kB] 322s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libthai0 armhf 0.1.29-2 [15.1 kB] 322s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [206 kB] 322s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [36.4 kB] 322s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [24.9 kB] 322s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB] 322s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libpaper-utils armhf 1.1.29 [8170 B] 322s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsharpyuv0 armhf 1.3.2-0.4build2 [13.6 kB] 322s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] 322s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [903 kB] 322s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB] 322s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libwebp7 armhf 1.3.2-0.4build2 [183 kB] 322s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu1 [178 kB] 322s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB] 322s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] 322s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.14-1 [681 kB] 322s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxt6t64 armhf 1:1.2.1-1.2 [145 kB] 322s Get:49 http://ftpmaster.internal/ubuntu noble/main armhf zip armhf 3.0-13 [162 kB] 322s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf unzip armhf 6.0-28ubuntu3 [163 kB] 322s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 322s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-core armhf 4.3.3-2build1 [26.6 MB] 323s Get:53 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-littler armhf 0.3.19-1 [80.8 kB] 323s Get:54 http://ftpmaster.internal/ubuntu noble/universe armhf littler all 0.3.19-1 [2472 B] 323s Get:55 http://ftpmaster.internal/ubuntu noble/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB] 323s Get:56 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-abind all 1.4-5-2 [63.6 kB] 323s Get:57 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cardata all 3.0.5-1 [1819 kB] 323s Get:58 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mass armhf 7.3-60.0.1-1 [1118 kB] 323s Get:59 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lattice armhf 0.22-5-1 [1341 kB] 323s Get:60 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-nlme armhf 3.1.164-1 [2252 kB] 323s Get:61 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrix armhf 1.6-5-1 [3762 kB] 323s Get:62 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mgcv armhf 1.9-1-1 [3205 kB] 323s Get:63 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-nnet armhf 7.3-19-2 [110 kB] 323s Get:64 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-boot all 1.3-30-1 [619 kB] 323s Get:65 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 323s Get:66 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rcpp armhf 1.0.12-1 [1968 kB] 323s Get:67 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-minqa armhf 1.2.6-1 [104 kB] 323s Get:68 http://ftpmaster.internal/ubuntu noble/universe armhf libnlopt0 armhf 2.7.1-5build2 [152 kB] 323s Get:69 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-brio armhf 1.1.4-1 [37.0 kB] 323s Get:70 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ps armhf 1.7.6-1 [310 kB] 323s Get:71 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB] 323s Get:72 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-processx armhf 3.8.3-1 [334 kB] 323s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-callr all 3.7.5-1 [429 kB] 323s Get:74 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB] 324s Get:75 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-desc all 1.4.3-1 [359 kB] 324s Get:76 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-digest armhf 0.6.34-1 [180 kB] 324s Get:77 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-evaluate all 0.23-1 [90.2 kB] 324s Get:78 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [438 kB] 324s Get:79 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB] 324s Get:80 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rlang armhf 1.1.3-1 [1658 kB] 324s Get:81 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 324s Get:82 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 324s Get:83 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-crayon all 1.5.2-1 [164 kB] 324s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-fs armhf 1.6.3+dfsg-1build1 [226 kB] 324s Get:85 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgbuild all 1.4.3-1 [209 kB] 324s Get:86 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rprojroot all 2.0.4-1 [124 kB] 324s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-withr all 3.0.0+dfsg-1 [228 kB] 324s Get:88 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgload all 1.3.4-1 [207 kB] 324s Get:89 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-praise all 1.0.0-4build1 [20.3 kB] 324s Get:90 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-diffobj armhf 0.3.5-1 [1115 kB] 324s Get:91 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-fansi armhf 1.0.5-1 [611 kB] 324s Get:92 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 324s Get:93 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 324s Get:94 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 324s Get:95 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 324s Get:96 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tibble armhf 3.2.1+dfsg-2 [415 kB] 324s Get:97 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 324s Get:98 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-waldo all 0.5.2-1build1 [120 kB] 324s Get:99 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-testthat armhf 3.2.1-1 [1666 kB] 324s Get:100 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-nloptr armhf 2.0.3-1 [363 kB] 324s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-rcppeigen armhf 0.3.4.0.0-1 [1401 kB] 324s Get:102 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-statmod armhf 1.5.0-1 [294 kB] 324s Get:103 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lme4 armhf 1.1-35.1-4 [4115 kB] 325s Get:104 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-backports armhf 1.4.1-1 [101 kB] 325s Get:105 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-generics all 0.1.3-1 [81.3 kB] 325s Get:106 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [218 kB] 325s Get:107 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-dplyr armhf 1.1.4-1 [1510 kB] 325s Get:108 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ellipsis armhf 0.3.2-2 [35.0 kB] 325s Get:109 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-purrr armhf 1.0.2-1 [499 kB] 325s Get:110 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-stringi armhf 1.8.3-1 [859 kB] 325s Get:111 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-stringr all 1.5.1-1 [290 kB] 325s Get:112 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cpp11 all 0.4.7-1 [266 kB] 325s Get:113 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tidyr armhf 1.3.1-1 [1152 kB] 325s Get:114 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 325s Get:115 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-numderiv all 2016.8-1.1-3 [115 kB] 325s Get:116 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-xfun armhf 0.41+dfsg-1 [415 kB] 325s Get:117 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-highr all 0.10+dfsg-1 [38.3 kB] 325s Get:118 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-yaml armhf 2.3.8-1 [99.0 kB] 325s Get:119 http://ftpmaster.internal/ubuntu noble/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 325s Get:120 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-knitr all 1.45+dfsg-1 [917 kB] 325s Get:121 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pbkrtest all 0.5.2-2 [182 kB] 325s Get:122 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-sparsem armhf 1.81-1 [902 kB] 325s Get:123 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrixmodels all 0.5-3-1 [361 kB] 325s Get:124 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-survival armhf 3.5-8-1 [6104 kB] 325s Get:125 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrixstats armhf 1.2.0-1 [478 kB] 325s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-rcpparmadillo armhf 0.12.8.1.0-1 [857 kB] 325s Get:127 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 325s Get:128 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 325s Get:129 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-farver armhf 2.1.1-1 [1346 kB] 325s Get:130 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 325s Get:131 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1538 kB] 325s Get:132 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB] 325s Get:133 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 325s Get:134 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] 325s Get:135 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-scales all 1.3.0-1 [603 kB] 325s Get:136 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 325s Get:137 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-class armhf 7.3-22-2 [86.8 kB] 325s Get:138 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB] 325s Get:139 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-e1071 armhf 1.7-14-1 [551 kB] 325s Get:140 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-codetools all 0.2-19-1 [90.5 kB] 325s Get:141 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-iterators all 1.0.14-1 [336 kB] 325s Get:142 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-foreach all 1.5.2-1 [124 kB] 325s Get:143 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-data.table armhf 1.14.10+dfsg-1 [1816 kB] 325s Get:144 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-modelmetrics armhf 1.2.2.2-1build1 [120 kB] 325s Get:145 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-plyr armhf 1.8.9-1 [832 kB] 325s Get:146 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-proc armhf 1.18.5-1 [961 kB] 326s Get:147 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tzdb armhf 0.4.0-2 [512 kB] 326s Get:148 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-clock armhf 0.7.0-1.1 [1773 kB] 326s Get:149 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-gower armhf 1.0.1-1 [206 kB] 326s Get:150 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-hardhat all 1.3.1+dfsg-1 [554 kB] 326s Get:151 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rpart armhf 4.1.23-1 [657 kB] 326s Get:152 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-shape all 1.4.6-1 [770 kB] 326s Get:153 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-diagram all 1.6.5-2 [656 kB] 326s Get:154 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-kernsmooth armhf 2.23-22-1 [89.9 kB] 326s Get:155 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-globals all 0.16.2-1 [117 kB] 326s Get:156 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 326s Get:157 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-parallelly armhf 1.37.1-1 [364 kB] 326s Get:158 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-future all 1.33.1+dfsg-1 [634 kB] 326s Get:159 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 326s Get:160 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-progressr all 0.14.0-1 [338 kB] 326s Get:161 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-squarem all 2021.1-1 [179 kB] 326s Get:162 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 326s Get:163 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-prodlim armhf 2023.08.28-1 [406 kB] 326s Get:164 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ipred armhf 0.9-14-1 [383 kB] 326s Get:165 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-timechange armhf 0.3.0-1 [182 kB] 326s Get:166 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lubridate armhf 1.9.3+dfsg-1 [1009 kB] 326s Get:167 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-timedate armhf 4032.109-1 [1229 kB] 326s Get:168 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-recipes all 1.0.9+dfsg-1 [1964 kB] 326s Get:169 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-reshape2 armhf 1.4.4-2build1 [110 kB] 326s Get:170 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-caret armhf 6.0-94+dfsg-1 [3433 kB] 326s Get:171 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-conquer armhf 1.3.3-1 [460 kB] 326s Get:172 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-quantreg armhf 5.97-1 [1520 kB] 326s Get:173 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-sp armhf 1:2.1-2+dfsg-1 [1445 kB] 326s Get:174 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-foreign armhf 0.8.86-1 [237 kB] 326s Get:175 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-maptools armhf 1:1.1-8+dfsg-1 [1363 kB] 326s Get:176 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-forcats all 1.0.0-1 [369 kB] 326s Get:177 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-hms all 1.1.3-1 [96.5 kB] 326s Get:178 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-clipr all 0.8.0-1 [53.5 kB] 326s Get:179 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-bit armhf 4.0.5-1 [1054 kB] 326s Get:180 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-bit64 armhf 4.0.5-1 [462 kB] 326s Get:181 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-prettyunits all 1.2.0-1 [162 kB] 326s Get:182 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-progress all 1.2.3-1 [91.9 kB] 326s Get:183 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-vroom armhf 1.6.5-1 [822 kB] 326s Get:184 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-readr armhf 2.1.5-1 [752 kB] 326s Get:185 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-haven armhf 2.5.4-1 [327 kB] 326s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-curl armhf 5.2.0+dfsg-1build1 [175 kB] 326s Get:187 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rematch all 2.0.0-1 [18.3 kB] 326s Get:188 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cellranger all 1.1.0-3 [102 kB] 326s Get:189 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-readxl armhf 1.4.3-1 [721 kB] 326s Get:190 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-writexl armhf 1.5.0-1 [143 kB] 326s Get:191 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 326s Get:192 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.oo all 1.26.0-1 [955 kB] 326s Get:193 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.utils all 2.12.3-1 [1386 kB] 326s Get:194 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-zip armhf 2.3.1-1 [116 kB] 326s Get:195 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-openxlsx armhf 4.2.5.2-1 [1927 kB] 326s Get:196 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rio all 1.0.1-1 [529 kB] 326s Get:197 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-car all 3.1-2-2 [1692 kB] 326s Get:198 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-zoo armhf 1.8-12-2 [984 kB] 326s Get:199 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lmtest armhf 0.9.40-1 [396 kB] 326s Get:200 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-sandwich all 3.1-0-1 [1484 kB] 327s Get:201 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-formula all 1.2-5-1 [158 kB] 327s Get:202 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-aer all 1.2-12-1 [2582 kB] 327s Get:203 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-blob all 1.2.4-1 [49.8 kB] 327s Get:204 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-fastmap armhf 1.1.1-1 [68.1 kB] 327s Get:205 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cachem armhf 1.0.8-1 [72.0 kB] 327s Get:206 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-dbi all 1.2.2-1 [823 kB] 327s Get:207 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-memoise all 2.0.1-1 [53.9 kB] 327s Get:208 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mitools all 2.4-2build1 [265 kB] 327s Get:209 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-plogr all 0.2.0-3build1 [15.1 kB] 327s Get:210 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rsqlite armhf 2.3.4-1 [1210 kB] 327s Get:211 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-survey all 4.2-1-1 [3189 kB] 328s Preconfiguring packages ... 328s Fetched 159 MB in 6s (26.1 MB/s) 328s Selecting previously unselected package libfreetype6:armhf. 328s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 328s Preparing to unpack .../000-libfreetype6_2.13.2+dfsg-1build2_armhf.deb ... 328s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build2) ... 328s Selecting previously unselected package fonts-dejavu-mono. 328s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 328s Unpacking fonts-dejavu-mono (2.37-8) ... 328s Selecting previously unselected package fonts-dejavu-core. 328s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 328s Unpacking fonts-dejavu-core (2.37-8) ... 328s Selecting previously unselected package fontconfig-config. 328s Preparing to unpack .../003-fontconfig-config_2.15.0-1.1ubuntu1_armhf.deb ... 329s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ... 329s Selecting previously unselected package libfontconfig1:armhf. 329s Preparing to unpack .../004-libfontconfig1_2.15.0-1.1ubuntu1_armhf.deb ... 329s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu1) ... 329s Selecting previously unselected package fontconfig. 329s Preparing to unpack .../005-fontconfig_2.15.0-1.1ubuntu1_armhf.deb ... 329s Unpacking fontconfig (2.15.0-1.1ubuntu1) ... 329s Selecting previously unselected package fonts-glyphicons-halflings. 329s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 329s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 329s Selecting previously unselected package fonts-mathjax. 329s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 329s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 329s Selecting previously unselected package libblas3:armhf. 329s Preparing to unpack .../008-libblas3_3.12.0-3_armhf.deb ... 329s Unpacking libblas3:armhf (3.12.0-3) ... 329s Selecting previously unselected package libpixman-1-0:armhf. 329s Preparing to unpack .../009-libpixman-1-0_0.42.2-1_armhf.deb ... 329s Unpacking libpixman-1-0:armhf (0.42.2-1) ... 329s Selecting previously unselected package libxcb-render0:armhf. 329s Preparing to unpack .../010-libxcb-render0_1.15-1_armhf.deb ... 329s Unpacking libxcb-render0:armhf (1.15-1) ... 329s Selecting previously unselected package libxcb-shm0:armhf. 329s Preparing to unpack .../011-libxcb-shm0_1.15-1_armhf.deb ... 329s Unpacking libxcb-shm0:armhf (1.15-1) ... 329s Selecting previously unselected package libxrender1:armhf. 329s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1_armhf.deb ... 329s Unpacking libxrender1:armhf (1:0.9.10-1.1) ... 329s Selecting previously unselected package libcairo2:armhf. 329s Preparing to unpack .../013-libcairo2_1.18.0-1ubuntu1_armhf.deb ... 329s Unpacking libcairo2:armhf (1.18.0-1ubuntu1) ... 329s Selecting previously unselected package libdatrie1:armhf. 329s Preparing to unpack .../014-libdatrie1_0.2.13-3_armhf.deb ... 329s Unpacking libdatrie1:armhf (0.2.13-3) ... 329s Selecting previously unselected package libdeflate0:armhf. 329s Preparing to unpack .../015-libdeflate0_1.19-1_armhf.deb ... 329s Unpacking libdeflate0:armhf (1.19-1) ... 329s Selecting previously unselected package libgfortran5:armhf. 329s Preparing to unpack .../016-libgfortran5_14-20240315-1ubuntu1_armhf.deb ... 329s Unpacking libgfortran5:armhf (14-20240315-1ubuntu1) ... 329s Selecting previously unselected package libgomp1:armhf. 329s Preparing to unpack .../017-libgomp1_14-20240315-1ubuntu1_armhf.deb ... 329s Unpacking libgomp1:armhf (14-20240315-1ubuntu1) ... 329s Selecting previously unselected package libgraphite2-3:armhf. 329s Preparing to unpack .../018-libgraphite2-3_1.3.14-2_armhf.deb ... 329s Unpacking libgraphite2-3:armhf (1.3.14-2) ... 329s Selecting previously unselected package libharfbuzz0b:armhf. 329s Preparing to unpack .../019-libharfbuzz0b_8.3.0-2build1_armhf.deb ... 329s Unpacking libharfbuzz0b:armhf (8.3.0-2build1) ... 329s Selecting previously unselected package x11-common. 329s Preparing to unpack .../020-x11-common_1%3a7.7+23ubuntu2_all.deb ... 329s Unpacking x11-common (1:7.7+23ubuntu2) ... 329s Selecting previously unselected package libice6:armhf. 329s Preparing to unpack .../021-libice6_2%3a1.0.10-1build2_armhf.deb ... 329s Unpacking libice6:armhf (2:1.0.10-1build2) ... 329s Selecting previously unselected package libjpeg-turbo8:armhf. 329s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ... 329s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 329s Selecting previously unselected package libjpeg8:armhf. 329s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_armhf.deb ... 329s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 330s Selecting previously unselected package libjs-bootstrap. 330s Preparing to unpack .../024-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 330s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 330s Selecting previously unselected package libjs-highlight.js. 330s Preparing to unpack .../025-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 330s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 330s Selecting previously unselected package libjs-jquery. 330s Preparing to unpack .../026-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 330s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 330s Selecting previously unselected package libjs-jquery-datatables. 330s Preparing to unpack .../027-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 330s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 330s Selecting previously unselected package liblapack3:armhf. 330s Preparing to unpack .../028-liblapack3_3.12.0-3_armhf.deb ... 330s Unpacking liblapack3:armhf (3.12.0-3) ... 330s Selecting previously unselected package liblerc4:armhf. 330s Preparing to unpack .../029-liblerc4_4.0.0+ds-4ubuntu1_armhf.deb ... 330s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu1) ... 330s Selecting previously unselected package libthai-data. 330s Preparing to unpack .../030-libthai-data_0.1.29-2_all.deb ... 330s Unpacking libthai-data (0.1.29-2) ... 330s Selecting previously unselected package libthai0:armhf. 330s Preparing to unpack .../031-libthai0_0.1.29-2_armhf.deb ... 330s Unpacking libthai0:armhf (0.1.29-2) ... 330s Selecting previously unselected package libpango-1.0-0:armhf. 330s Preparing to unpack .../032-libpango-1.0-0_1.52.1+ds-1_armhf.deb ... 330s Unpacking libpango-1.0-0:armhf (1.52.1+ds-1) ... 330s Selecting previously unselected package libpangoft2-1.0-0:armhf. 330s Preparing to unpack .../033-libpangoft2-1.0-0_1.52.1+ds-1_armhf.deb ... 330s Unpacking libpangoft2-1.0-0:armhf (1.52.1+ds-1) ... 330s Selecting previously unselected package libpangocairo-1.0-0:armhf. 330s Preparing to unpack .../034-libpangocairo-1.0-0_1.52.1+ds-1_armhf.deb ... 330s Unpacking libpangocairo-1.0-0:armhf (1.52.1+ds-1) ... 330s Selecting previously unselected package libpaper1:armhf. 330s Preparing to unpack .../035-libpaper1_1.1.29_armhf.deb ... 330s Unpacking libpaper1:armhf (1.1.29) ... 330s Selecting previously unselected package libpaper-utils. 330s Preparing to unpack .../036-libpaper-utils_1.1.29_armhf.deb ... 330s Unpacking libpaper-utils (1.1.29) ... 330s Selecting previously unselected package libsharpyuv0:armhf. 330s Preparing to unpack .../037-libsharpyuv0_1.3.2-0.4build2_armhf.deb ... 330s Unpacking libsharpyuv0:armhf (1.3.2-0.4build2) ... 330s Selecting previously unselected package libsm6:armhf. 330s Preparing to unpack .../038-libsm6_2%3a1.2.3-1build2_armhf.deb ... 330s Unpacking libsm6:armhf (2:1.2.3-1build2) ... 330s Selecting previously unselected package libtcl8.6:armhf. 330s Preparing to unpack .../039-libtcl8.6_8.6.14+dfsg-1_armhf.deb ... 330s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1) ... 330s Selecting previously unselected package libjbig0:armhf. 330s Preparing to unpack .../040-libjbig0_2.1-6.1ubuntu1_armhf.deb ... 330s Unpacking libjbig0:armhf (2.1-6.1ubuntu1) ... 330s Selecting previously unselected package libwebp7:armhf. 330s Preparing to unpack .../041-libwebp7_1.3.2-0.4build2_armhf.deb ... 330s Unpacking libwebp7:armhf (1.3.2-0.4build2) ... 330s Selecting previously unselected package libtiff6:armhf. 330s Preparing to unpack .../042-libtiff6_4.5.1+git230720-4ubuntu1_armhf.deb ... 330s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu1) ... 330s Selecting previously unselected package libxft2:armhf. 330s Preparing to unpack .../043-libxft2_2.3.6-1_armhf.deb ... 330s Unpacking libxft2:armhf (2.3.6-1) ... 330s Selecting previously unselected package libxss1:armhf. 330s Preparing to unpack .../044-libxss1_1%3a1.2.3-1build2_armhf.deb ... 330s Unpacking libxss1:armhf (1:1.2.3-1build2) ... 330s Selecting previously unselected package libtk8.6:armhf. 330s Preparing to unpack .../045-libtk8.6_8.6.14-1_armhf.deb ... 330s Unpacking libtk8.6:armhf (8.6.14-1) ... 330s Selecting previously unselected package libxt6t64:armhf. 330s Preparing to unpack .../046-libxt6t64_1%3a1.2.1-1.2_armhf.deb ... 330s Unpacking libxt6t64:armhf (1:1.2.1-1.2) ... 331s Selecting previously unselected package zip. 331s Preparing to unpack .../047-zip_3.0-13_armhf.deb ... 331s Unpacking zip (3.0-13) ... 331s Selecting previously unselected package unzip. 331s Preparing to unpack .../048-unzip_6.0-28ubuntu3_armhf.deb ... 331s Unpacking unzip (6.0-28ubuntu3) ... 331s Selecting previously unselected package xdg-utils. 331s Preparing to unpack .../049-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 331s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 331s Selecting previously unselected package r-base-core. 331s Preparing to unpack .../050-r-base-core_4.3.3-2build1_armhf.deb ... 331s Unpacking r-base-core (4.3.3-2build1) ... 331s Selecting previously unselected package r-cran-littler. 331s Preparing to unpack .../051-r-cran-littler_0.3.19-1_armhf.deb ... 331s Unpacking r-cran-littler (0.3.19-1) ... 331s Selecting previously unselected package littler. 331s Preparing to unpack .../052-littler_0.3.19-1_all.deb ... 331s Unpacking littler (0.3.19-1) ... 331s Selecting previously unselected package node-normalize.css. 331s Preparing to unpack .../053-node-normalize.css_8.0.1-5_all.deb ... 331s Unpacking node-normalize.css (8.0.1-5) ... 331s Selecting previously unselected package r-cran-abind. 331s Preparing to unpack .../054-r-cran-abind_1.4-5-2_all.deb ... 331s Unpacking r-cran-abind (1.4-5-2) ... 331s Selecting previously unselected package r-cran-cardata. 331s Preparing to unpack .../055-r-cran-cardata_3.0.5-1_all.deb ... 331s Unpacking r-cran-cardata (3.0.5-1) ... 331s Selecting previously unselected package r-cran-mass. 331s Preparing to unpack .../056-r-cran-mass_7.3-60.0.1-1_armhf.deb ... 331s Unpacking r-cran-mass (7.3-60.0.1-1) ... 332s Selecting previously unselected package r-cran-lattice. 332s Preparing to unpack .../057-r-cran-lattice_0.22-5-1_armhf.deb ... 332s Unpacking r-cran-lattice (0.22-5-1) ... 332s Selecting previously unselected package r-cran-nlme. 332s Preparing to unpack .../058-r-cran-nlme_3.1.164-1_armhf.deb ... 332s Unpacking r-cran-nlme (3.1.164-1) ... 332s Selecting previously unselected package r-cran-matrix. 332s Preparing to unpack .../059-r-cran-matrix_1.6-5-1_armhf.deb ... 332s Unpacking r-cran-matrix (1.6-5-1) ... 332s Selecting previously unselected package r-cran-mgcv. 332s Preparing to unpack .../060-r-cran-mgcv_1.9-1-1_armhf.deb ... 332s Unpacking r-cran-mgcv (1.9-1-1) ... 332s Selecting previously unselected package r-cran-nnet. 332s Preparing to unpack .../061-r-cran-nnet_7.3-19-2_armhf.deb ... 332s Unpacking r-cran-nnet (7.3-19-2) ... 332s Selecting previously unselected package r-cran-boot. 332s Preparing to unpack .../062-r-cran-boot_1.3-30-1_all.deb ... 332s Unpacking r-cran-boot (1.3-30-1) ... 332s Selecting previously unselected package r-cran-pkgkitten. 332s Preparing to unpack .../063-r-cran-pkgkitten_0.2.3-1_all.deb ... 332s Unpacking r-cran-pkgkitten (0.2.3-1) ... 332s Selecting previously unselected package r-cran-rcpp. 332s Preparing to unpack .../064-r-cran-rcpp_1.0.12-1_armhf.deb ... 332s Unpacking r-cran-rcpp (1.0.12-1) ... 332s Selecting previously unselected package r-cran-minqa. 332s Preparing to unpack .../065-r-cran-minqa_1.2.6-1_armhf.deb ... 332s Unpacking r-cran-minqa (1.2.6-1) ... 332s Selecting previously unselected package libnlopt0:armhf. 332s Preparing to unpack .../066-libnlopt0_2.7.1-5build2_armhf.deb ... 332s Unpacking libnlopt0:armhf (2.7.1-5build2) ... 332s Selecting previously unselected package r-cran-brio. 332s Preparing to unpack .../067-r-cran-brio_1.1.4-1_armhf.deb ... 332s Unpacking r-cran-brio (1.1.4-1) ... 332s Selecting previously unselected package r-cran-ps. 332s Preparing to unpack .../068-r-cran-ps_1.7.6-1_armhf.deb ... 332s Unpacking r-cran-ps (1.7.6-1) ... 332s Selecting previously unselected package r-cran-r6. 332s Preparing to unpack .../069-r-cran-r6_2.5.1-1_all.deb ... 332s Unpacking r-cran-r6 (2.5.1-1) ... 332s Selecting previously unselected package r-cran-processx. 332s Preparing to unpack .../070-r-cran-processx_3.8.3-1_armhf.deb ... 332s Unpacking r-cran-processx (3.8.3-1) ... 332s Selecting previously unselected package r-cran-callr. 332s Preparing to unpack .../071-r-cran-callr_3.7.5-1_all.deb ... 332s Unpacking r-cran-callr (3.7.5-1) ... 332s Selecting previously unselected package r-cran-cli. 332s Preparing to unpack .../072-r-cran-cli_3.6.2-1_armhf.deb ... 332s Unpacking r-cran-cli (3.6.2-1) ... 333s Selecting previously unselected package r-cran-desc. 333s Preparing to unpack .../073-r-cran-desc_1.4.3-1_all.deb ... 333s Unpacking r-cran-desc (1.4.3-1) ... 333s Selecting previously unselected package r-cran-digest. 333s Preparing to unpack .../074-r-cran-digest_0.6.34-1_armhf.deb ... 333s Unpacking r-cran-digest (0.6.34-1) ... 333s Selecting previously unselected package r-cran-evaluate. 333s Preparing to unpack .../075-r-cran-evaluate_0.23-1_all.deb ... 333s Unpacking r-cran-evaluate (0.23-1) ... 333s Selecting previously unselected package r-cran-jsonlite. 333s Preparing to unpack .../076-r-cran-jsonlite_1.8.8+dfsg-1_armhf.deb ... 333s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 333s Selecting previously unselected package r-cran-glue. 333s Preparing to unpack .../077-r-cran-glue_1.7.0-1_armhf.deb ... 333s Unpacking r-cran-glue (1.7.0-1) ... 333s Selecting previously unselected package r-cran-rlang. 333s Preparing to unpack .../078-r-cran-rlang_1.1.3-1_armhf.deb ... 333s Unpacking r-cran-rlang (1.1.3-1) ... 333s Selecting previously unselected package r-cran-lifecycle. 333s Preparing to unpack .../079-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 333s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 333s Selecting previously unselected package r-cran-magrittr. 333s Preparing to unpack .../080-r-cran-magrittr_2.0.3-1_armhf.deb ... 333s Unpacking r-cran-magrittr (2.0.3-1) ... 333s Selecting previously unselected package r-cran-crayon. 333s Preparing to unpack .../081-r-cran-crayon_1.5.2-1_all.deb ... 333s Unpacking r-cran-crayon (1.5.2-1) ... 333s Selecting previously unselected package r-cran-fs. 333s Preparing to unpack .../082-r-cran-fs_1.6.3+dfsg-1build1_armhf.deb ... 333s Unpacking r-cran-fs (1.6.3+dfsg-1build1) ... 333s Selecting previously unselected package r-cran-pkgbuild. 333s Preparing to unpack .../083-r-cran-pkgbuild_1.4.3-1_all.deb ... 333s Unpacking r-cran-pkgbuild (1.4.3-1) ... 333s Selecting previously unselected package r-cran-rprojroot. 333s Preparing to unpack .../084-r-cran-rprojroot_2.0.4-1_all.deb ... 333s Unpacking r-cran-rprojroot (2.0.4-1) ... 333s Selecting previously unselected package r-cran-withr. 333s Preparing to unpack .../085-r-cran-withr_3.0.0+dfsg-1_all.deb ... 333s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 333s Selecting previously unselected package r-cran-pkgload. 333s Preparing to unpack .../086-r-cran-pkgload_1.3.4-1_all.deb ... 333s Unpacking r-cran-pkgload (1.3.4-1) ... 333s Selecting previously unselected package r-cran-praise. 333s Preparing to unpack .../087-r-cran-praise_1.0.0-4build1_all.deb ... 333s Unpacking r-cran-praise (1.0.0-4build1) ... 333s Selecting previously unselected package r-cran-diffobj. 333s Preparing to unpack .../088-r-cran-diffobj_0.3.5-1_armhf.deb ... 333s Unpacking r-cran-diffobj (0.3.5-1) ... 333s Selecting previously unselected package r-cran-fansi. 333s Preparing to unpack .../089-r-cran-fansi_1.0.5-1_armhf.deb ... 333s Unpacking r-cran-fansi (1.0.5-1) ... 333s Selecting previously unselected package r-cran-utf8. 333s Preparing to unpack .../090-r-cran-utf8_1.2.4-1_armhf.deb ... 333s Unpacking r-cran-utf8 (1.2.4-1) ... 334s Selecting previously unselected package r-cran-vctrs. 334s Preparing to unpack .../091-r-cran-vctrs_0.6.5-1_armhf.deb ... 334s Unpacking r-cran-vctrs (0.6.5-1) ... 334s Selecting previously unselected package r-cran-pillar. 334s Preparing to unpack .../092-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 334s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 334s Selecting previously unselected package r-cran-pkgconfig. 334s Preparing to unpack .../093-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 334s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 334s Selecting previously unselected package r-cran-tibble. 334s Preparing to unpack .../094-r-cran-tibble_3.2.1+dfsg-2_armhf.deb ... 334s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 334s Selecting previously unselected package r-cran-rematch2. 334s Preparing to unpack .../095-r-cran-rematch2_2.1.2-2build1_all.deb ... 334s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 334s Selecting previously unselected package r-cran-waldo. 334s Preparing to unpack .../096-r-cran-waldo_0.5.2-1build1_all.deb ... 334s Unpacking r-cran-waldo (0.5.2-1build1) ... 334s Selecting previously unselected package r-cran-testthat. 334s Preparing to unpack .../097-r-cran-testthat_3.2.1-1_armhf.deb ... 334s Unpacking r-cran-testthat (3.2.1-1) ... 334s Selecting previously unselected package r-cran-nloptr. 334s Preparing to unpack .../098-r-cran-nloptr_2.0.3-1_armhf.deb ... 334s Unpacking r-cran-nloptr (2.0.3-1) ... 334s Selecting previously unselected package r-cran-rcppeigen. 334s Preparing to unpack .../099-r-cran-rcppeigen_0.3.4.0.0-1_armhf.deb ... 334s Unpacking r-cran-rcppeigen (0.3.4.0.0-1) ... 334s Selecting previously unselected package r-cran-statmod. 334s Preparing to unpack .../100-r-cran-statmod_1.5.0-1_armhf.deb ... 334s Unpacking r-cran-statmod (1.5.0-1) ... 334s Selecting previously unselected package r-cran-lme4. 334s Preparing to unpack .../101-r-cran-lme4_1.1-35.1-4_armhf.deb ... 334s Unpacking r-cran-lme4 (1.1-35.1-4) ... 334s Selecting previously unselected package r-cran-backports. 334s Preparing to unpack .../102-r-cran-backports_1.4.1-1_armhf.deb ... 334s Unpacking r-cran-backports (1.4.1-1) ... 334s Selecting previously unselected package r-cran-generics. 334s Preparing to unpack .../103-r-cran-generics_0.1.3-1_all.deb ... 334s Unpacking r-cran-generics (0.1.3-1) ... 334s Selecting previously unselected package r-cran-tidyselect. 334s Preparing to unpack .../104-r-cran-tidyselect_1.2.0+dfsg-1_armhf.deb ... 334s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 334s Selecting previously unselected package r-cran-dplyr. 334s Preparing to unpack .../105-r-cran-dplyr_1.1.4-1_armhf.deb ... 334s Unpacking r-cran-dplyr (1.1.4-1) ... 334s Selecting previously unselected package r-cran-ellipsis. 335s Preparing to unpack .../106-r-cran-ellipsis_0.3.2-2_armhf.deb ... 335s Unpacking r-cran-ellipsis (0.3.2-2) ... 335s Selecting previously unselected package r-cran-purrr. 335s Preparing to unpack .../107-r-cran-purrr_1.0.2-1_armhf.deb ... 335s Unpacking r-cran-purrr (1.0.2-1) ... 335s Selecting previously unselected package r-cran-stringi. 335s Preparing to unpack .../108-r-cran-stringi_1.8.3-1_armhf.deb ... 335s Unpacking r-cran-stringi (1.8.3-1) ... 335s Selecting previously unselected package r-cran-stringr. 335s Preparing to unpack .../109-r-cran-stringr_1.5.1-1_all.deb ... 335s Unpacking r-cran-stringr (1.5.1-1) ... 335s Selecting previously unselected package r-cran-cpp11. 335s Preparing to unpack .../110-r-cran-cpp11_0.4.7-1_all.deb ... 335s Unpacking r-cran-cpp11 (0.4.7-1) ... 335s Selecting previously unselected package r-cran-tidyr. 335s Preparing to unpack .../111-r-cran-tidyr_1.3.1-1_armhf.deb ... 335s Unpacking r-cran-tidyr (1.3.1-1) ... 335s Selecting previously unselected package r-cran-broom. 335s Preparing to unpack .../112-r-cran-broom_1.0.5+dfsg-1_all.deb ... 335s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 335s Selecting previously unselected package r-cran-numderiv. 335s Preparing to unpack .../113-r-cran-numderiv_2016.8-1.1-3_all.deb ... 335s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 335s Selecting previously unselected package r-cran-xfun. 335s Preparing to unpack .../114-r-cran-xfun_0.41+dfsg-1_armhf.deb ... 335s Unpacking r-cran-xfun (0.41+dfsg-1) ... 335s Selecting previously unselected package r-cran-highr. 335s Preparing to unpack .../115-r-cran-highr_0.10+dfsg-1_all.deb ... 335s Unpacking r-cran-highr (0.10+dfsg-1) ... 335s Selecting previously unselected package r-cran-yaml. 335s Preparing to unpack .../116-r-cran-yaml_2.3.8-1_armhf.deb ... 335s Unpacking r-cran-yaml (2.3.8-1) ... 335s Selecting previously unselected package libjs-mathjax. 335s Preparing to unpack .../117-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 335s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 336s Selecting previously unselected package r-cran-knitr. 336s Preparing to unpack .../118-r-cran-knitr_1.45+dfsg-1_all.deb ... 336s Unpacking r-cran-knitr (1.45+dfsg-1) ... 336s Selecting previously unselected package r-cran-pbkrtest. 336s Preparing to unpack .../119-r-cran-pbkrtest_0.5.2-2_all.deb ... 336s Unpacking r-cran-pbkrtest (0.5.2-2) ... 336s Selecting previously unselected package r-cran-sparsem. 336s Preparing to unpack .../120-r-cran-sparsem_1.81-1_armhf.deb ... 336s Unpacking r-cran-sparsem (1.81-1) ... 336s Selecting previously unselected package r-cran-matrixmodels. 336s Preparing to unpack .../121-r-cran-matrixmodels_0.5-3-1_all.deb ... 336s Unpacking r-cran-matrixmodels (0.5-3-1) ... 336s Selecting previously unselected package r-cran-survival. 336s Preparing to unpack .../122-r-cran-survival_3.5-8-1_armhf.deb ... 336s Unpacking r-cran-survival (3.5-8-1) ... 336s Selecting previously unselected package r-cran-matrixstats. 336s Preparing to unpack .../123-r-cran-matrixstats_1.2.0-1_armhf.deb ... 336s Unpacking r-cran-matrixstats (1.2.0-1) ... 336s Selecting previously unselected package r-cran-rcpparmadillo. 336s Preparing to unpack .../124-r-cran-rcpparmadillo_0.12.8.1.0-1_armhf.deb ... 336s Unpacking r-cran-rcpparmadillo (0.12.8.1.0-1) ... 336s Selecting previously unselected package r-cran-gtable. 336s Preparing to unpack .../125-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 336s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 336s Selecting previously unselected package r-cran-isoband. 336s Preparing to unpack .../126-r-cran-isoband_0.2.7-1_armhf.deb ... 336s Unpacking r-cran-isoband (0.2.7-1) ... 336s Selecting previously unselected package r-cran-farver. 336s Preparing to unpack .../127-r-cran-farver_2.1.1-1_armhf.deb ... 336s Unpacking r-cran-farver (2.1.1-1) ... 336s Selecting previously unselected package r-cran-labeling. 336s Preparing to unpack .../128-r-cran-labeling_0.4.3-1_all.deb ... 336s Unpacking r-cran-labeling (0.4.3-1) ... 336s Selecting previously unselected package r-cran-colorspace. 336s Preparing to unpack .../129-r-cran-colorspace_2.1-0+dfsg-1_armhf.deb ... 336s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 336s Selecting previously unselected package r-cran-munsell. 336s Preparing to unpack .../130-r-cran-munsell_0.5.0-2build1_all.deb ... 336s Unpacking r-cran-munsell (0.5.0-2build1) ... 336s Selecting previously unselected package r-cran-rcolorbrewer. 336s Preparing to unpack .../131-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 336s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 336s Selecting previously unselected package r-cran-viridislite. 336s Preparing to unpack .../132-r-cran-viridislite_0.4.2-2_all.deb ... 336s Unpacking r-cran-viridislite (0.4.2-2) ... 337s Selecting previously unselected package r-cran-scales. 337s Preparing to unpack .../133-r-cran-scales_1.3.0-1_all.deb ... 337s Unpacking r-cran-scales (1.3.0-1) ... 337s Selecting previously unselected package r-cran-ggplot2. 337s Preparing to unpack .../134-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 337s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 337s Selecting previously unselected package r-cran-class. 337s Preparing to unpack .../135-r-cran-class_7.3-22-2_armhf.deb ... 337s Unpacking r-cran-class (7.3-22-2) ... 337s Selecting previously unselected package r-cran-proxy. 337s Preparing to unpack .../136-r-cran-proxy_0.4-27-1_armhf.deb ... 337s Unpacking r-cran-proxy (0.4-27-1) ... 337s Selecting previously unselected package r-cran-e1071. 337s Preparing to unpack .../137-r-cran-e1071_1.7-14-1_armhf.deb ... 337s Unpacking r-cran-e1071 (1.7-14-1) ... 337s Selecting previously unselected package r-cran-codetools. 337s Preparing to unpack .../138-r-cran-codetools_0.2-19-1_all.deb ... 337s Unpacking r-cran-codetools (0.2-19-1) ... 337s Selecting previously unselected package r-cran-iterators. 337s Preparing to unpack .../139-r-cran-iterators_1.0.14-1_all.deb ... 337s Unpacking r-cran-iterators (1.0.14-1) ... 337s Selecting previously unselected package r-cran-foreach. 337s Preparing to unpack .../140-r-cran-foreach_1.5.2-1_all.deb ... 337s Unpacking r-cran-foreach (1.5.2-1) ... 337s Selecting previously unselected package r-cran-data.table. 337s Preparing to unpack .../141-r-cran-data.table_1.14.10+dfsg-1_armhf.deb ... 337s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 337s Selecting previously unselected package r-cran-modelmetrics. 337s Preparing to unpack .../142-r-cran-modelmetrics_1.2.2.2-1build1_armhf.deb ... 337s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 338s Selecting previously unselected package r-cran-plyr. 338s Preparing to unpack .../143-r-cran-plyr_1.8.9-1_armhf.deb ... 338s Unpacking r-cran-plyr (1.8.9-1) ... 339s Selecting previously unselected package r-cran-proc. 340s Preparing to unpack .../144-r-cran-proc_1.18.5-1_armhf.deb ... 340s Unpacking r-cran-proc (1.18.5-1) ... 340s Selecting previously unselected package r-cran-tzdb. 342s Preparing to unpack .../145-r-cran-tzdb_0.4.0-2_armhf.deb ... 342s Unpacking r-cran-tzdb (0.4.0-2) ... 342s Selecting previously unselected package r-cran-clock. 342s Preparing to unpack .../146-r-cran-clock_0.7.0-1.1_armhf.deb ... 342s Unpacking r-cran-clock (0.7.0-1.1) ... 342s Selecting previously unselected package r-cran-gower. 342s Preparing to unpack .../147-r-cran-gower_1.0.1-1_armhf.deb ... 342s Unpacking r-cran-gower (1.0.1-1) ... 342s Selecting previously unselected package r-cran-hardhat. 342s Preparing to unpack .../148-r-cran-hardhat_1.3.1+dfsg-1_all.deb ... 342s Unpacking r-cran-hardhat (1.3.1+dfsg-1) ... 342s Selecting previously unselected package r-cran-rpart. 342s Preparing to unpack .../149-r-cran-rpart_4.1.23-1_armhf.deb ... 342s Unpacking r-cran-rpart (4.1.23-1) ... 342s Selecting previously unselected package r-cran-shape. 343s Preparing to unpack .../150-r-cran-shape_1.4.6-1_all.deb ... 343s Unpacking r-cran-shape (1.4.6-1) ... 343s Selecting previously unselected package r-cran-diagram. 343s Preparing to unpack .../151-r-cran-diagram_1.6.5-2_all.deb ... 343s Unpacking r-cran-diagram (1.6.5-2) ... 343s Selecting previously unselected package r-cran-kernsmooth. 343s Preparing to unpack .../152-r-cran-kernsmooth_2.23-22-1_armhf.deb ... 343s Unpacking r-cran-kernsmooth (2.23-22-1) ... 343s Selecting previously unselected package r-cran-globals. 343s Preparing to unpack .../153-r-cran-globals_0.16.2-1_all.deb ... 343s Unpacking r-cran-globals (0.16.2-1) ... 343s Selecting previously unselected package r-cran-listenv. 343s Preparing to unpack .../154-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 343s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 343s Selecting previously unselected package r-cran-parallelly. 343s Preparing to unpack .../155-r-cran-parallelly_1.37.1-1_armhf.deb ... 343s Unpacking r-cran-parallelly (1.37.1-1) ... 343s Selecting previously unselected package r-cran-future. 343s Preparing to unpack .../156-r-cran-future_1.33.1+dfsg-1_all.deb ... 343s Unpacking r-cran-future (1.33.1+dfsg-1) ... 343s Selecting previously unselected package r-cran-future.apply. 343s Preparing to unpack .../157-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 343s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 343s Selecting previously unselected package r-cran-progressr. 343s Preparing to unpack .../158-r-cran-progressr_0.14.0-1_all.deb ... 343s Unpacking r-cran-progressr (0.14.0-1) ... 343s Selecting previously unselected package r-cran-squarem. 343s Preparing to unpack .../159-r-cran-squarem_2021.1-1_all.deb ... 343s Unpacking r-cran-squarem (2021.1-1) ... 343s Selecting previously unselected package r-cran-lava. 343s Preparing to unpack .../160-r-cran-lava_1.7.3+dfsg-1_all.deb ... 343s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 343s Selecting previously unselected package r-cran-prodlim. 343s Preparing to unpack .../161-r-cran-prodlim_2023.08.28-1_armhf.deb ... 343s Unpacking r-cran-prodlim (2023.08.28-1) ... 343s Selecting previously unselected package r-cran-ipred. 343s Preparing to unpack .../162-r-cran-ipred_0.9-14-1_armhf.deb ... 343s Unpacking r-cran-ipred (0.9-14-1) ... 343s Selecting previously unselected package r-cran-timechange. 343s Preparing to unpack .../163-r-cran-timechange_0.3.0-1_armhf.deb ... 343s Unpacking r-cran-timechange (0.3.0-1) ... 343s Selecting previously unselected package r-cran-lubridate. 343s Preparing to unpack .../164-r-cran-lubridate_1.9.3+dfsg-1_armhf.deb ... 343s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 343s Selecting previously unselected package r-cran-timedate. 343s Preparing to unpack .../165-r-cran-timedate_4032.109-1_armhf.deb ... 343s Unpacking r-cran-timedate (4032.109-1) ... 343s Selecting previously unselected package r-cran-recipes. 343s Preparing to unpack .../166-r-cran-recipes_1.0.9+dfsg-1_all.deb ... 343s Unpacking r-cran-recipes (1.0.9+dfsg-1) ... 343s Selecting previously unselected package r-cran-reshape2. 344s Preparing to unpack .../167-r-cran-reshape2_1.4.4-2build1_armhf.deb ... 344s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 344s Selecting previously unselected package r-cran-caret. 344s Preparing to unpack .../168-r-cran-caret_6.0-94+dfsg-1_armhf.deb ... 344s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 344s Selecting previously unselected package r-cran-conquer. 344s Preparing to unpack .../169-r-cran-conquer_1.3.3-1_armhf.deb ... 344s Unpacking r-cran-conquer (1.3.3-1) ... 344s Selecting previously unselected package r-cran-quantreg. 344s Preparing to unpack .../170-r-cran-quantreg_5.97-1_armhf.deb ... 344s Unpacking r-cran-quantreg (5.97-1) ... 344s Selecting previously unselected package r-cran-sp. 344s Preparing to unpack .../171-r-cran-sp_1%3a2.1-2+dfsg-1_armhf.deb ... 344s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 344s Selecting previously unselected package r-cran-foreign. 344s Preparing to unpack .../172-r-cran-foreign_0.8.86-1_armhf.deb ... 344s Unpacking r-cran-foreign (0.8.86-1) ... 344s Selecting previously unselected package r-cran-maptools. 344s Preparing to unpack .../173-r-cran-maptools_1%3a1.1-8+dfsg-1_armhf.deb ... 344s Unpacking r-cran-maptools (1:1.1-8+dfsg-1) ... 344s Selecting previously unselected package r-cran-forcats. 344s Preparing to unpack .../174-r-cran-forcats_1.0.0-1_all.deb ... 344s Unpacking r-cran-forcats (1.0.0-1) ... 344s Selecting previously unselected package r-cran-hms. 344s Preparing to unpack .../175-r-cran-hms_1.1.3-1_all.deb ... 344s Unpacking r-cran-hms (1.1.3-1) ... 344s Selecting previously unselected package r-cran-clipr. 344s Preparing to unpack .../176-r-cran-clipr_0.8.0-1_all.deb ... 344s Unpacking r-cran-clipr (0.8.0-1) ... 344s Selecting previously unselected package r-cran-bit. 344s Preparing to unpack .../177-r-cran-bit_4.0.5-1_armhf.deb ... 344s Unpacking r-cran-bit (4.0.5-1) ... 344s Selecting previously unselected package r-cran-bit64. 344s Preparing to unpack .../178-r-cran-bit64_4.0.5-1_armhf.deb ... 344s Unpacking r-cran-bit64 (4.0.5-1) ... 344s Selecting previously unselected package r-cran-prettyunits. 344s Preparing to unpack .../179-r-cran-prettyunits_1.2.0-1_all.deb ... 344s Unpacking r-cran-prettyunits (1.2.0-1) ... 344s Selecting previously unselected package r-cran-progress. 344s Preparing to unpack .../180-r-cran-progress_1.2.3-1_all.deb ... 344s Unpacking r-cran-progress (1.2.3-1) ... 344s Selecting previously unselected package r-cran-vroom. 344s Preparing to unpack .../181-r-cran-vroom_1.6.5-1_armhf.deb ... 344s Unpacking r-cran-vroom (1.6.5-1) ... 344s Selecting previously unselected package r-cran-readr. 344s Preparing to unpack .../182-r-cran-readr_2.1.5-1_armhf.deb ... 344s Unpacking r-cran-readr (2.1.5-1) ... 344s Selecting previously unselected package r-cran-haven. 344s Preparing to unpack .../183-r-cran-haven_2.5.4-1_armhf.deb ... 344s Unpacking r-cran-haven (2.5.4-1) ... 344s Selecting previously unselected package r-cran-curl. 344s Preparing to unpack .../184-r-cran-curl_5.2.0+dfsg-1build1_armhf.deb ... 344s Unpacking r-cran-curl (5.2.0+dfsg-1build1) ... 344s Selecting previously unselected package r-cran-rematch. 344s Preparing to unpack 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unselected package r-cran-r.utils. 345s Preparing to unpack .../191-r-cran-r.utils_2.12.3-1_all.deb ... 345s Unpacking r-cran-r.utils (2.12.3-1) ... 345s Selecting previously unselected package r-cran-zip. 345s Preparing to unpack .../192-r-cran-zip_2.3.1-1_armhf.deb ... 345s Unpacking r-cran-zip (2.3.1-1) ... 345s Selecting previously unselected package r-cran-openxlsx. 345s Preparing to unpack .../193-r-cran-openxlsx_4.2.5.2-1_armhf.deb ... 345s Unpacking r-cran-openxlsx (4.2.5.2-1) ... 345s Selecting previously unselected package r-cran-rio. 345s Preparing to unpack .../194-r-cran-rio_1.0.1-1_all.deb ... 345s Unpacking r-cran-rio (1.0.1-1) ... 345s Selecting previously unselected package r-cran-car. 345s Preparing to unpack .../195-r-cran-car_3.1-2-2_all.deb ... 345s Unpacking r-cran-car (3.1-2-2) ... 345s Selecting previously unselected package r-cran-zoo. 345s Preparing to unpack .../196-r-cran-zoo_1.8-12-2_armhf.deb ... 345s Unpacking r-cran-zoo (1.8-12-2) ... 345s Selecting previously unselected package r-cran-lmtest. 345s Preparing to unpack .../197-r-cran-lmtest_0.9.40-1_armhf.deb ... 345s Unpacking r-cran-lmtest (0.9.40-1) ... 345s Selecting previously unselected package r-cran-sandwich. 345s Preparing to unpack .../198-r-cran-sandwich_3.1-0-1_all.deb ... 345s Unpacking r-cran-sandwich (3.1-0-1) ... 345s Selecting previously unselected package r-cran-formula. 345s Preparing to unpack .../199-r-cran-formula_1.2-5-1_all.deb ... 345s Unpacking r-cran-formula (1.2-5-1) ... 345s Selecting previously unselected package r-cran-aer. 345s Preparing to unpack .../200-r-cran-aer_1.2-12-1_all.deb ... 345s Unpacking r-cran-aer (1.2-12-1) ... 345s Selecting previously unselected package r-cran-blob. 345s Preparing to unpack .../201-r-cran-blob_1.2.4-1_all.deb ... 345s Unpacking r-cran-blob (1.2.4-1) ... 345s Selecting previously unselected package r-cran-fastmap. 345s Preparing to unpack .../202-r-cran-fastmap_1.1.1-1_armhf.deb ... 345s Unpacking r-cran-fastmap 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Setting up r-cran-lattice (0.22-5-1) ... 349s Setting up r-cran-ps (1.7.6-1) ... 349s Setting up r-cran-nlme (3.1.164-1) ... 349s Setting up r-cran-farver (2.1.1-1) ... 349s Setting up r-cran-formula (1.2-5-1) ... 349s Setting up r-cran-zip (2.3.1-1) ... 349s Setting up r-cran-viridislite (0.4.2-2) ... 349s Setting up r-cran-sparsem (1.81-1) ... 349s Setting up r-cran-statmod (1.5.0-1) ... 349s Setting up r-cran-nnet (7.3-19-2) ... 349s Setting up r-cran-clipr (0.8.0-1) ... 349s Setting up r-cran-proxy (0.4-27-1) ... 349s Setting up r-cran-r6 (2.5.1-1) ... 349s Setting up r-cran-pkgkitten (0.2.3-1) ... 349s Setting up r-cran-numderiv (2016.8-1.1-3) ... 349s Setting up r-cran-magrittr (2.0.3-1) ... 349s Setting up r-cran-littler (0.3.19-1) ... 349s Setting up r-cran-fs (1.6.3+dfsg-1build1) ... 349s Setting up r-cran-rcpp (1.0.12-1) ... 349s Setting up r-cran-curl (5.2.0+dfsg-1build1) ... 349s Setting up r-cran-codetools (0.2-19-1) ... 349s Setting up r-cran-brio (1.1.4-1) ... 349s 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349s Setting up r-cran-highr (0.10+dfsg-1) ... 349s Setting up r-cran-foreach (1.5.2-1) ... 349s Setting up r-cran-prettyunits (1.2.0-1) ... 349s Setting up r-cran-fansi (1.0.5-1) ... 349s Setting up r-cran-cardata (3.0.5-1) ... 349s Setting up r-cran-mass (7.3-60.0.1-1) ... 349s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 349s Setting up r-cran-glue (1.7.0-1) ... 349s Setting up r-cran-foreign (0.8.86-1) ... 349s Setting up r-cran-writexl (1.5.0-1) ... 349s Setting up r-cran-bit (4.0.5-1) ... 349s Setting up r-cran-cli (3.6.2-1) ... 349s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 349s Setting up r-cran-rprojroot (2.0.4-1) ... 349s Setting up r-cran-bit64 (4.0.5-1) ... 349s Setting up r-cran-progressr (0.14.0-1) ... 349s Setting up r-cran-shape (1.4.6-1) ... 349s Setting up r-cran-fastmap (1.1.1-1) ... 349s Setting up r-cran-r.methodss3 (1.8.2-1) ... 349s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 349s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 349s Setting up 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(1:1.1-8+dfsg-1) ... 349s Setting up r-cran-vctrs (0.6.5-1) ... 349s Setting up r-cran-rcppeigen (0.3.4.0.0-1) ... 349s Setting up r-cran-mitools (2.4-2build1) ... 349s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 349s Setting up r-cran-ellipsis (0.3.2-2) ... 349s Setting up r-cran-minqa (1.2.6-1) ... 349s Setting up r-cran-stringr (1.5.1-1) ... 349s Setting up r-cran-class (7.3-22-2) ... 349s Setting up r-cran-modelmetrics (1.2.2.2-1build1) ... 349s Setting up r-cran-callr (3.7.5-1) ... 349s Setting up r-cran-openxlsx (4.2.5.2-1) ... 349s Setting up r-cran-matrixmodels (0.5-3-1) ... 349s Setting up r-cran-desc (1.4.3-1) ... 349s Setting up r-cran-munsell (0.5.0-2build1) ... 349s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 349s Setting up r-cran-clock (0.7.0-1.1) ... 349s Setting up r-cran-sandwich (3.1-0-1) ... 349s Setting up r-cran-proc (1.18.5-1) ... 349s Setting up r-cran-survival (3.5-8-1) ... 349s Setting up r-cran-survey (4.2-1-1) ... 349s Setting up r-cran-r.oo (1.26.0-1) ... 349s Setting up r-cran-future (1.33.1+dfsg-1) ... 349s Setting up r-cran-forcats (1.0.0-1) ... 349s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 349s Setting up r-cran-reshape2 (1.4.4-2build1) ... 349s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 349s Setting up r-cran-timechange (0.3.0-1) ... 349s Setting up r-cran-hms (1.1.3-1) ... 349s Setting up r-cran-scales (1.3.0-1) ... 349s Setting up r-cran-memoise (2.0.1-1) ... 349s Setting up r-cran-lava (1.7.3+dfsg-1) ... 349s Setting up r-cran-purrr (1.0.2-1) ... 349s Setting up r-cran-e1071 (1.7-14-1) ... 349s Setting up r-cran-blob (1.2.4-1) ... 349s Setting up r-cran-pkgbuild (1.4.3-1) ... 349s Setting up r-cran-hardhat (1.3.1+dfsg-1) ... 349s Setting up r-cran-dplyr (1.1.4-1) ... 349s Setting up r-cran-rsqlite (2.3.4-1) ... 349s Setting up r-cran-progress (1.2.3-1) ... 349s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 349s Setting up r-cran-pkgload (1.3.4-1) ... 349s Setting up r-cran-r.utils (2.12.3-1) ... 349s Setting up r-cran-vroom (1.6.5-1) ... 349s Setting up r-cran-prodlim (2023.08.28-1) ... 349s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 349s Setting up r-cran-cellranger (1.1.0-3) ... 349s Setting up r-cran-rematch2 (2.1.2-2build1) ... 349s Setting up r-cran-rpart (4.1.23-1) ... 349s Setting up r-cran-ipred (0.9-14-1) ... 349s Setting up r-cran-readr (2.1.5-1) ... 349s Setting up r-cran-waldo (0.5.2-1build1) ... 349s Setting up r-cran-tidyr (1.3.1-1) ... 349s Setting up r-cran-recipes (1.0.9+dfsg-1) ... 349s Setting up r-cran-readxl (1.4.3-1) ... 349s Setting up r-cran-haven (2.5.4-1) ... 349s Setting up r-cran-caret (6.0-94+dfsg-1) ... 349s Setting up r-cran-testthat (3.2.1-1) ... 349s Setting up r-cran-broom (1.0.5+dfsg-1) ... 349s Setting up r-cran-conquer (1.3.3-1) ... 349s Setting up r-cran-rio (1.0.1-1) ... 349s Setting up r-cran-nloptr (2.0.3-1) ... 349s Setting up r-cran-quantreg (5.97-1) ... 349s Setting up r-cran-lme4 (1.1-35.1-4) ... 349s Setting up r-cran-pbkrtest (0.5.2-2) ... 349s Setting up r-cran-car (3.1-2-2) ... 349s Setting up r-cran-aer (1.2-12-1) ... 349s Setting up autopkgtest-satdep (0) ... 349s Processing triggers for man-db (2.12.0-3build4) ... 350s Processing triggers for install-info (7.1-3build1) ... 350s Processing triggers for libc-bin (2.39-0ubuntu6) ... 385s (Reading database ... 79751 files and directories currently installed.) 385s Removing autopkgtest-satdep (0) ... 391s autopkgtest [12:49:29]: test run-unit-test: [----------------------- 393s BEGIN TEST 3stage2phase.R 393s 393s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 393s Copyright (C) 2024 The R Foundation for Statistical Computing 393s Platform: arm-unknown-linux-gnueabihf (32-bit) 393s 393s R is free software and comes with ABSOLUTELY NO WARRANTY. 393s You are welcome to redistribute it under certain conditions. 393s Type 'license()' or 'licence()' for distribution details. 393s 393s R is a collaborative project with many contributors. 393s Type 'contributors()' for more information and 393s 'citation()' on how to cite R or R packages in publications. 393s 393s Type 'demo()' for some demos, 'help()' for on-line help, or 393s 'help.start()' for an HTML browser interface to help. 393s Type 'q()' to quit R. 393s 393s > ## simulated data with three-stage sample at phase 1, SRS at phase 2 393s > ## motivated by dietary biomarker substudy in HCHS 393s > 393s > library(survey) 393s Loading required package: grid 393s Loading required package: Matrix 394s Loading required package: survival 394s 394s Attaching package: 'survey' 394s 394s The following object is masked from 'package:graphics': 394s 394s dotchart 394s 394s > 394s > load("simdata1.RData") 394s > 394s > twophase.full = twophase(id=list(~block+house+ind,~1), 394s + strata=list(~strat,NULL), 394s + probs=list(~P.block+P.house+P.ind,NULL), 394s + subset=~phase2, 394s + data=simdata1,method='full') 395s > 395s > twophase.approx = twophase(id=list(~block+house+ind,~1), 395s + strata=list(~strat,NULL), 395s + probs=list(~P.block+P.house+P.ind,NULL), 395s + subset=~phase2, 395s + data=simdata1,method='approx') 395s > 395s > twophase.rep = twophase(id=list(~block,~1), 395s + strata=list(~strat,NULL), 395s + probs=list(~I(P.block*P.house*P.ind),NULL), 395s + subset=~phase2, 395s + data=simdata1,method='full') 395s > 395s > 395s > twophase.repapprox = twophase(id=list(~block,~1), 395s + strata=list(~strat,NULL), 395s + probs=list(~I(P.block*P.house*P.ind),NULL), 395s + subset=~phase2, 395s + data=simdata1,method='approx') 395s > 395s > 395s > svymean(~age, twophase.full) 395s mean SE 395s age 41.116 0.8114 395s > svymean(~age, twophase.approx) 395s mean SE 395s age 41.116 0.6693 395s > svymean(~age, twophase.rep) 395s mean SE 395s age 41.116 0.784 395s > svymean(~age, twophase.repapprox) 395s mean SE 395s age 41.116 0.6592 395s > 395s BEGIN TEST DBIcheck.R 395s 395s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 395s Copyright (C) 2024 The R Foundation for Statistical Computing 395s Platform: arm-unknown-linux-gnueabihf (32-bit) 395s 395s R is free software and comes with ABSOLUTELY NO WARRANTY. 395s You are welcome to redistribute it under certain conditions. 395s Type 'license()' or 'licence()' for distribution details. 395s 395s R is a collaborative project with many contributors. 395s Type 'contributors()' for more information and 395s 'citation()' on how to cite R or R packages in publications. 395s 395s Type 'demo()' for some demos, 'help()' for on-line help, or 395s 'help.start()' for an HTML browser interface to help. 395s Type 'q()' to quit R. 395s 395s > 395s > library(survey) 395s Loading required package: grid 395s Loading required package: Matrix 396s Loading required package: survival 397s > library(RSQLite) 397s 397s Attaching package: 'survey' 397s 397s The following object is masked from 'package:graphics': 397s 397s dotchart 397s 397s > 397s > data(api) 397s > apiclus1$api_stu<-apiclus1$api.stu 397s > apiclus1$comp_imp<-apiclus1$comp.imp 397s > dclus1<-svydesign(id=~dnum, weights=~pw, fpc=~fpc,data=apiclus1) 397s > dbclus1<-svydesign(id=~dnum, weights=~pw, fpc=~fpc, 397s + data="apiclus1",dbtype="SQLite", dbname=system.file("api.db",package="survey")) 397s > 397s > m<-svymean(~api00+stype,dclus1) 397s > m.db<-svymean(~api00+stype, dbclus1) 397s > all.equal(coef(m),coef(m.db)) 397s [1] TRUE 397s > all.equal(vcov(m), vcov(m.db)) 397s [1] TRUE 397s > 397s > r<-svyratio(~api_stu, ~enroll, design=dclus1) 397s > r.db<-svyratio(~api_stu, ~enroll, design=dbclus1) 397s > all.equal(coef(r), coef(r.db)) 397s [1] TRUE 397s > all.equal(SE(r), SE(r.db)) 397s [1] TRUE 397s > 397s > b<-svyby(~api99+api00,~stype, design=dclus1, svymean, deff=TRUE) 397s > b.db<-svyby(~api99+api00,~stype, design=dbclus1,svymean, deff=TRUE) 397s > all.equal(coef(b), coef(b.db)) 397s [1] TRUE 397s > all.equal(SE(b), SE(b.db)) 397s [1] TRUE 397s > all.equal(deff(b), deff(b.db)) 397s [1] TRUE 397s > 397s > l<-svyglm(api00~api99+mobility, design=dclus1) 397s > l.db<-svyglm(api00~api99+mobility, design=dbclus1) 397s > all.equal(coef(l),coef(l.db)) 397s [1] TRUE 397s > all.equal(vcov(l), vcov(l.db)) 397s [1] TRUE 397s > 397s > dclus1<-update(dclus1, apidiff=api00-api99) 397s > dclus1<-update(dclus1, apipct= apidiff/api99) 397s > dbclus1<-update(dbclus1, apidiff=api00-api99) 397s > dbclus1<-update(dbclus1, apipct= apidiff/api99) 397s > 397s > u<-svymean(~api00+apidiff+apipct, dclus1) 397s > u.db<-svymean(~api00+apidiff+apipct, dbclus1) 397s > all.equal(u, u.db) 397s [1] TRUE 397s > 397s > all.equal(nrow(dclus1),nrow(dbclus1)) 397s [1] TRUE 397s > all.equal(nrow(subset(dclus1,stype=="E")), 397s + nrow(subset(dbclus1,stype=="E"))) 397s [1] "Mean relative difference: 0.2708333" 397s > 397s > ## replicate weights 397s > rclus1<-as.svrepdesign(dclus1) 397s > db_rclus1<-svrepdesign(weights=~pw, repweights="wt[1-9]+", type="JK1", scale=(1-15/757)*14/15, 397s + data="apiclus1rep",dbtype="SQLite", dbname=system.file("api.db",package="survey"),combined.weights=FALSE) 397s > m<-svymean(~api00+api99,rclus1) 397s > m.db<-svymean(~api00+api99,db_rclus1) 397s > all.equal(m,m.db) 397s [1] TRUE 397s > 397s > summary(db_rclus1) 397s DB-backed replicate weight design 397s Call: svrepdesign(weights = ~pw, repweights = "wt[1-9]+", type = "JK1", 397s scale = (1 - 15/757) * 14/15, data = "apiclus1rep", dbtype = "SQLite", 397s dbname = system.file("api.db", package = "survey"), combined.weights = FALSE) 397s Unstratified cluster jacknife (JK1) with 15 replicates. 397s Variables: 397s [1] "row_names" "cds" "stype" "name" "sname" 397s [6] "snum" "dname" "dnum" "cname" "cnum" 397s [11] "flag" "pcttest" "api00" "api99" "target" 397s [16] "growth" "sch_wide" "comp_imp" "both" "awards" 397s [21] "meals" "ell" "yr_rnd" "mobility" "acs_k3" 397s [26] "acs_46" "acs_core" "pct_resp" "not_hsg" "hsg" 397s [31] "some_col" "col_grad" "grad_sch" "avg_ed" "full__1" 397s [36] "emer" "enroll" "api_stu" "fpc" "pw" 397s [41] "row_names:1" "wt1" "wt2" "wt3" "wt4" 397s [46] "wt5" "wt6" "wt7" "wt8" "wt9" 397s [51] "wt10" "wt11" "wt12" "wt13" "wt14" 397s [56] "wt15" 397s > 397s > s<-svymean(~api00, subset(rclus1, comp_imp=="Yes")) 397s > s.db<-svymean(~api00, subset(db_rclus1, comp_imp=="Yes")) 397s > all.equal(s,s.db) 397s [1] TRUE 397s > 397s BEGIN TEST anova-svycoxph.R 397s 397s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 397s Copyright (C) 2024 The R Foundation for Statistical Computing 397s Platform: arm-unknown-linux-gnueabihf (32-bit) 397s 397s R is free software and comes with ABSOLUTELY NO WARRANTY. 397s You are welcome to redistribute it under certain conditions. 397s Type 'license()' or 'licence()' for distribution details. 397s 397s R is a collaborative project with many contributors. 397s Type 'contributors()' for more information and 397s 'citation()' on how to cite R or R packages in publications. 397s 397s Type 'demo()' for some demos, 'help()' for on-line help, or 397s 'help.start()' for an HTML browser interface to help. 397s Type 'q()' to quit R. 397s 397s > 397s > library(survey) 397s Loading required package: grid 397s Loading required package: Matrix 399s Loading required package: survival 399s 399s Attaching package: 'survey' 399s 399s The following object is masked from 'package:graphics': 399s 399s dotchart 399s 399s > example(svycoxph, ask=FALSE) 399s 399s svycxp> ## Somewhat unrealistic example of nonresponse bias. 399s svycxp> data(pbc, package="survival") 399s 399s svycxp> pbc$randomized<-with(pbc, !is.na(trt) & trt>0) 399s 399s svycxp> biasmodel<-glm(randomized~age*edema,data=pbc,family=binomial) 399s 399s svycxp> pbc$randprob<-fitted(biasmodel) 399s 399s svycxp> if (is.null(pbc$albumin)) pbc$albumin<-pbc$alb ##pre2.9.0 399s 399s svycxp> dpbc<-svydesign(id=~1, prob=~randprob, strata=~edema, data=subset(pbc,randomized)) 399s 399s svycxp> rpbc<-as.svrepdesign(dpbc) 399s 399s svycxp> (model<-svycoxph(Surv(time,status>0)~log(bili)+protime+albumin,design=dpbc)) 399s Call: 399s svycoxph(formula = Surv(time, status > 0) ~ log(bili) + protime + 399s albumin, design = dpbc) 399s 399s coef exp(coef) se(coef) robust se z p 399s log(bili) 0.88592 2.42522 0.09140 0.09048 9.791 < 2e-16 399s protime 0.24487 1.27745 0.07825 0.08122 3.015 0.00257 399s albumin -1.04298 0.35240 0.21211 0.20454 -5.099 3.41e-07 399s 399s Likelihood ratio test= on 3 df, p= 399s n= 312, number of events= 144 399s 399s svycxp> svycoxph(Surv(time,status>0)~log(bili)+protime+albumin,design=rpbc) 400s Call: 400s svycoxph.svyrep.design(formula = Surv(time, status > 0) ~ log(bili) + 400s protime + albumin, design = rpbc) 400s 400s coef exp(coef) se(coef) z p 400s log(bili) 0.88592 2.42522 0.09838 9.005 < 2e-16 400s protime 0.24487 1.27745 0.09373 2.612 0.00899 400s albumin -1.04298 0.35240 0.21966 -4.748 2.05e-06 400s 400s Likelihood ratio test=NA on 3 df, p=NA 400s n= 312, number of events= 144 400s 400s svycxp> s<-predict(model,se=TRUE, type="curve", 400s svycxp+ newdata=data.frame(bili=c(3,9), protime=c(10,10), albumin=c(3.5,3.5))) 400s 400s svycxp> plot(s[[1]],ci=TRUE,col="sienna") 400s 400s svycxp> lines(s[[2]], ci=TRUE,col="royalblue") 400s 400s svycxp> quantile(s[[1]], ci=TRUE) 400s 0.75 0.5 0.25 400s 1435 2503 3574 400s attr(,"ci") 400s 0.025 0.975 400s 0.75 1217 1786 400s 0.5 2256 3170 400s 0.25 3222 Inf 400s 400s svycxp> confint(s[[2]], parm=365*(1:5)) 400s 0.025 0.975 400s 365 0.8375139 0.9453781 400s 730 0.7382750 0.8999016 400s 1095 0.4784105 0.7478460 400s 1460 0.3192009 0.6206764 400s 1825 0.2149475 0.5292978 400s > m<-update(model, .~.+I(protime^2)) 400s > a<-anova(m,model) 400s > b<-anova(m, model,force=TRUE) 400s > stopifnot(isTRUE(all.equal(b[2:6],a[c(3,4,6,7,8)]))) 400s > 400s BEGIN TEST api.R 400s 400s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 400s Copyright (C) 2024 The R Foundation for Statistical Computing 400s Platform: arm-unknown-linux-gnueabihf (32-bit) 400s 400s R is free software and comes with ABSOLUTELY NO WARRANTY. 400s You are welcome to redistribute it under certain conditions. 400s Type 'license()' or 'licence()' for distribution details. 400s 400s R is a collaborative project with many contributors. 400s Type 'contributors()' for more information and 400s 'citation()' on how to cite R or R packages in publications. 400s 400s Type 'demo()' for some demos, 'help()' for on-line help, or 400s 'help.start()' for an HTML browser interface to help. 400s Type 'q()' to quit R. 400s 400s > library(survey) 400s Loading required package: grid 400s Loading required package: Matrix 401s Loading required package: survival 402s 402s Attaching package: 'survey' 402s 402s The following object is masked from 'package:graphics': 402s 402s dotchart 402s 402s > options(survey.replicates.mse=TRUE) 402s > example(api) 402s 402s api> library(survey) 402s 402s api> data(api) 402s 402s api> mean(apipop$api00) 402s [1] 664.7126 402s 402s api> sum(apipop$enroll, na.rm=TRUE) 402s [1] 3811472 402s 402s api> #stratified sample 402s api> dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 402s 402s api> summary(dstrat) 402s Stratified Independent Sampling design 402s dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.02262 0.02262 0.03587 0.04014 0.05339 0.06623 402s Stratum Sizes: 402s E H M 402s obs 100 50 50 402s design.PSU 100 50 50 402s actual.PSU 100 50 50 402s Population stratum sizes (PSUs): 402s E H M 402s 4421 755 1018 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "pw" "fpc" 402s 402s api> svymean(~api00, dstrat) 402s mean SE 402s api00 662.29 9.4089 402s 402s api> svytotal(~enroll, dstrat, na.rm=TRUE) 402s total SE 402s enroll 3687178 114642 402s 402s api> # one-stage cluster sample 402s api> dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 402s 402s api> summary(dclus1) 402s 1 - level Cluster Sampling design 402s With (15) clusters. 402s dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.02954 0.02954 0.02954 0.02954 0.02954 0.02954 402s Population size (PSUs): 757 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> svymean(~api00, dclus1) 402s mean SE 402s api00 644.17 23.542 402s 402s api> svytotal(~enroll, dclus1, na.rm=TRUE) 402s total SE 402s enroll 3404940 932235 402s 402s api> # two-stage cluster sample 402s api> dclus2<-svydesign(id=~dnum+snum, fpc=~fpc1+fpc2, data=apiclus2) 402s 402s api> summary(dclus2) 402s 2 - level Cluster Sampling design 402s With (40, 126) clusters. 402s dclus2<-svydesign(id=~dnum+snum, fpc=~fpc1+fpc2, data=apiclus2) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.003669 0.037743 0.052840 0.042390 0.052840 0.052840 402s Population size (PSUs): 757 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "pw" "fpc1" "fpc2" 402s 402s api> svymean(~api00, dclus2) 402s mean SE 402s api00 670.81 30.099 402s 402s api> svytotal(~enroll, dclus2, na.rm=TRUE) 402s total SE 402s enroll 2639273 799638 402s 402s api> # two-stage `with replacement' 402s api> dclus2wr<-svydesign(id=~dnum+snum, weights=~pw, data=apiclus2) 402s 402s api> summary(dclus2wr) 402s 2 - level Cluster Sampling design (with replacement) 402s With (40, 126) clusters. 402s dclus2wr<-svydesign(id=~dnum+snum, weights=~pw, data=apiclus2) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.003669 0.037743 0.052840 0.042390 0.052840 0.052840 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "pw" "fpc1" "fpc2" 402s 402s api> svymean(~api00, dclus2wr) 402s mean SE 402s api00 670.81 30.712 402s 402s api> svytotal(~enroll, dclus2wr, na.rm=TRUE) 402s total SE 402s enroll 2639273 820261 402s 402s api> # convert to replicate weights 402s api> rclus1<-as.svrepdesign(dclus1) 402s 402s api> summary(rclus1) 402s Call: as.svrepdesign.default(dclus1) 402s Unstratified cluster jacknife (JK1) with 15 replicates and MSE variances. 402s Variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> svymean(~api00, rclus1) 402s mean SE 402s api00 644.17 26.335 402s 402s api> svytotal(~enroll, rclus1, na.rm=TRUE) 402s total SE 402s enroll 3404940 932235 402s 402s api> # post-stratify on school type 402s api> pop.types<-xtabs(~stype, data=apipop) 402s 402s api> rclus1p<-postStratify(rclus1, ~stype, pop.types) 402s 402s api> dclus1p<-postStratify(dclus1, ~stype, pop.types) 402s 402s api> summary(dclus1p) 402s 1 - level Cluster Sampling design 402s With (15) clusters. 402s dclus1p<-postStratify(dclus1, ~stype, pop.types) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.01854 0.03257 0.03257 0.03040 0.03257 0.03257 402s Population size (PSUs): 757 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> summary(rclus1p) 402s Call: rclus1p<-postStratify(rclus1, ~stype, pop.types) 402s Unstratified cluster jacknife (JK1) with 15 replicates and MSE variances. 402s Variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> svymean(~api00, dclus1p) 402s mean SE 402s api00 642.31 23.92 402s 402s api> svytotal(~enroll, dclus1p, na.rm=TRUE) 402s total SE 402s enroll 3680893 406293 402s 402s api> svymean(~api00, rclus1p) 402s mean SE 402s api00 642.31 26.936 402s 402s api> svytotal(~enroll, rclus1p, na.rm=TRUE) 402s total SE 402s enroll 3680893 473434 402s > 402s > options(survey.replicates.mse=FALSE) 402s > example(api) 402s 402s api> library(survey) 402s 402s api> data(api) 402s 402s api> mean(apipop$api00) 402s [1] 664.7126 402s 402s api> sum(apipop$enroll, na.rm=TRUE) 402s [1] 3811472 402s 402s api> #stratified sample 402s api> dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 402s 402s api> summary(dstrat) 402s Stratified Independent Sampling design 402s dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.02262 0.02262 0.03587 0.04014 0.05339 0.06623 402s Stratum Sizes: 402s E H M 402s obs 100 50 50 402s design.PSU 100 50 50 402s actual.PSU 100 50 50 402s Population stratum sizes (PSUs): 402s E H M 402s 4421 755 1018 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "pw" "fpc" 402s 402s api> svymean(~api00, dstrat) 402s mean SE 402s api00 662.29 9.4089 402s 402s api> svytotal(~enroll, dstrat, na.rm=TRUE) 402s total SE 402s enroll 3687178 114642 402s 402s api> # one-stage cluster sample 402s api> dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 402s 402s api> summary(dclus1) 402s 1 - level Cluster Sampling design 402s With (15) clusters. 402s dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.02954 0.02954 0.02954 0.02954 0.02954 0.02954 402s Population size (PSUs): 757 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> svymean(~api00, dclus1) 402s mean SE 402s api00 644.17 23.542 402s 402s api> svytotal(~enroll, dclus1, na.rm=TRUE) 402s total SE 402s enroll 3404940 932235 402s 402s api> # two-stage cluster sample 402s api> dclus2<-svydesign(id=~dnum+snum, fpc=~fpc1+fpc2, data=apiclus2) 402s 402s api> summary(dclus2) 402s 2 - level Cluster Sampling design 402s With (40, 126) clusters. 402s dclus2<-svydesign(id=~dnum+snum, fpc=~fpc1+fpc2, data=apiclus2) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.003669 0.037743 0.052840 0.042390 0.052840 0.052840 402s Population size (PSUs): 757 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "pw" "fpc1" "fpc2" 402s 402s api> svymean(~api00, dclus2) 402s mean SE 402s api00 670.81 30.099 402s 402s api> svytotal(~enroll, dclus2, na.rm=TRUE) 402s total SE 402s enroll 2639273 799638 402s 402s api> # two-stage `with replacement' 402s api> dclus2wr<-svydesign(id=~dnum+snum, weights=~pw, data=apiclus2) 402s 402s api> summary(dclus2wr) 402s 2 - level Cluster Sampling design (with replacement) 402s With (40, 126) clusters. 402s dclus2wr<-svydesign(id=~dnum+snum, weights=~pw, data=apiclus2) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.003669 0.037743 0.052840 0.042390 0.052840 0.052840 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "pw" "fpc1" "fpc2" 402s 402s api> svymean(~api00, dclus2wr) 402s mean SE 402s api00 670.81 30.712 402s 402s api> svytotal(~enroll, dclus2wr, na.rm=TRUE) 402s total SE 402s enroll 2639273 820261 402s 402s api> # convert to replicate weights 402s api> rclus1<-as.svrepdesign(dclus1) 402s 402s api> summary(rclus1) 402s Call: as.svrepdesign.default(dclus1) 402s Unstratified cluster jacknife (JK1) with 15 replicates. 402s Variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> svymean(~api00, rclus1) 402s mean SE 402s api00 644.17 26.329 402s 402s api> svytotal(~enroll, rclus1, na.rm=TRUE) 402s total SE 402s enroll 3404940 932235 402s 402s api> # post-stratify on school type 402s api> pop.types<-xtabs(~stype, data=apipop) 402s 402s api> rclus1p<-postStratify(rclus1, ~stype, pop.types) 402s 402s api> dclus1p<-postStratify(dclus1, ~stype, pop.types) 402s 402s api> summary(dclus1p) 402s 1 - level Cluster Sampling design 402s With (15) clusters. 402s dclus1p<-postStratify(dclus1, ~stype, pop.types) 402s Probabilities: 402s Min. 1st Qu. Median Mean 3rd Qu. Max. 402s 0.01854 0.03257 0.03257 0.03040 0.03257 0.03257 402s Population size (PSUs): 757 402s Data variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> summary(rclus1p) 402s Call: rclus1p<-postStratify(rclus1, ~stype, pop.types) 402s Unstratified cluster jacknife (JK1) with 15 replicates. 402s Variables: 402s [1] "cds" "stype" "name" "sname" "snum" "dname" 402s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 402s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 402s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 402s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 402s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 402s [37] "api.stu" "fpc" "pw" 402s 402s api> svymean(~api00, dclus1p) 402s mean SE 402s api00 642.31 23.92 402s 402s api> svytotal(~enroll, dclus1p, na.rm=TRUE) 402s total SE 402s enroll 3680893 406293 402s 402s api> svymean(~api00, rclus1p) 402s mean SE 402s api00 642.31 26.934 402s 402s api> svytotal(~enroll, rclus1p, na.rm=TRUE) 402s total SE 402s enroll 3680893 473431 402s > 402s BEGIN TEST badcal.R 402s 402s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 402s Copyright (C) 2024 The R Foundation for Statistical Computing 402s Platform: arm-unknown-linux-gnueabihf (32-bit) 402s 402s R is free software and comes with ABSOLUTELY NO WARRANTY. 402s You are welcome to redistribute it under certain conditions. 402s Type 'license()' or 'licence()' for distribution details. 402s 402s R is a collaborative project with many contributors. 402s Type 'contributors()' for more information and 402s 'citation()' on how to cite R or R packages in publications. 402s 402s Type 'demo()' for some demos, 'help()' for on-line help, or 402s 'help.start()' for an HTML browser interface to help. 402s Type 'q()' to quit R. 402s 402s Loading required package: grid 402s > ## 402s > ## Calibration with badly-scaled initial weights (bug report by Takahiro Tsuchiya) 402s > ## 402s > library(survey) 402s Loading required package: Matrix 403s Loading required package: survival 403s 403s Attaching package: 'survey' 403s 403s The following object is masked from 'package:graphics': 403s 403s dotchart 403s 403s > data <- data.frame(x=c(1,1,1,1,2,2,2,2,2,2), w=rep(10,10)) 403s > des <- svydesign(ids=~1, weights=~w, data=data) 403s > des.c <- calibrate(des, ~factor(x), c(10000, 5000)) 403s > des.r <- calibrate(des, ~factor(x), c(10000, 5000), calfun='raking') 403s > stopifnot(all.equal(svytotal(~factor(x), des.c), svytotal(~factor(x), des.r))) 403s > 403s BEGIN TEST bycovmat.R 404s 404s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 404s Copyright (C) 2024 The R Foundation for Statistical Computing 404s Platform: arm-unknown-linux-gnueabihf (32-bit) 404s 404s R is free software and comes with ABSOLUTELY NO WARRANTY. 404s You are welcome to redistribute it under certain conditions. 404s Type 'license()' or 'licence()' for distribution details. 404s 404s R is a collaborative project with many contributors. 404s Type 'contributors()' for more information and 404s 'citation()' on how to cite R or R packages in publications. 404s 404s Type 'demo()' for some demos, 'help()' for on-line help, or 404s 'help.start()' for an HTML browser interface to help. 404s Type 'q()' to quit R. 404s 404s > 404s > library(survey) 404s Loading required package: grid 404s Loading required package: Matrix 405s Loading required package: survival 405s 405s Attaching package: 'survey' 405s 405s > data(api) 405s The following object is masked from 'package:graphics': 405s 405s dotchart 405s 405s > options(survey.replicates.mse=TRUE) 405s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 405s > rclus1<-as.svrepdesign(dclus1) 405s > 405s > a<-svyby(~api00+api99, ~comp.imp+sch.wide,design=rclus1,svymean, 405s + covmat=TRUE,drop.empty.groups=FALSE) 405s > b<-svyby(~api00+api99, ~comp.imp+sch.wide,design=rclus1,svymean, 405s + covmat=TRUE,drop.empty.groups=TRUE) 405s > 405s > stopifnot(all.equal( 405s + as.vector(as.matrix(SE(a))),as.vector(sqrt(diag(vcov(a)))) 405s + )) 405s > stopifnot(all.equal( 405s + as.vector(as.matrix(SE(b))),as.vector(sqrt(diag(vcov(b)))) 405s + )) 405s > 405s > rat <- svyratio(~ell+mobility, ~mobility+meals, dclus1,covmat=TRUE) 405s > all <- svytotal(~ell+mobility+meals, dclus1) 405s > 405s > stopifnot(all(abs(vcov(svycontrast(all, 405s + list(quote(ell/mobility), 405s + quote(mobility/mobility), 405s + quote(ell/meals),quote(mobility/meals)))) 405s + -vcov(rat))<1e-10)) 405s > 405s > stopifnot(all(abs(SE(rat)-sqrt(diag(vcov(rat))))<1e-10)) 405s > 405s > rat <- svyratio(~ell+mobility, ~mobility+meals, rclus1,covmat=TRUE) 405s > all <- svytotal(~ell+mobility+meals, rclus1, return.replicates=TRUE) 405s > 405s > con<-svycontrast(all, 405s + list(quote(ell/mobility), 405s + quote(mobility/mobility), 405s + quote(ell/meals),quote(mobility/meals))) 405s > 405s > stopifnot(all(abs(survey:::svrVar(con$replicates, rclus1$scale,rclus1$rscales,mse=rclus1$mse, coef=coef(con))-vcov(rat))<1e-10)) 405s > 405s > options(survey.replicates.mse=FALSE) 405s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 405s > rclus1<-as.svrepdesign(dclus1) 405s > 405s > a<-svyby(~api00+api99, ~comp.imp+sch.wide,design=rclus1,svymean, 405s + covmat=TRUE,drop.empty.groups=FALSE) 405s > b<-svyby(~api00+api99, ~comp.imp+sch.wide,design=rclus1,svymean, 405s + covmat=TRUE,drop.empty.groups=TRUE) 405s > 405s > stopifnot(all.equal( 405s + as.vector(as.matrix(SE(a))), as.vector(sqrt(diag(vcov(a)))) 405s + )) 405s > stopifnot(all.equal( 405s + as.vector(as.matrix(SE(b))), as.vector(sqrt(diag(vcov(b)))) 405s + )) 405s > 405s > rat <- svyratio(~ell+mobility, ~mobility+meals, dclus1,covmat=TRUE) 405s > all <- svytotal(~ell+mobility+meals, dclus1) 405s > 405s > stopifnot(all(abs(vcov(svycontrast(all, 405s + list(quote(ell/mobility), 405s + quote(mobility/mobility), 405s + quote(ell/meals),quote(mobility/meals)))) 405s + -vcov(rat))<1e-10)) 405s > 405s > stopifnot(all(abs(SE(rat)-sqrt(diag(vcov(rat))))<1e-10)) 405s > 405s > rat <- svyratio(~ell+mobility, ~mobility+meals, rclus1,covmat=TRUE) 405s > all <- svytotal(~ell+mobility+meals, rclus1, return.replicates=TRUE) 405s > 405s > con<-svycontrast(all, 405s + list(quote(ell/mobility), 405s + quote(mobility/mobility), 405s + quote(ell/meals),quote(mobility/meals))) 405s > 405s > stopifnot(all(abs(survey:::svrVar(con$replicates, rclus1$scale,rclus1$rscales,mse=rclus1$mse, coef=coef(con))-vcov(rat))<1e-10)) 405s > 405s > 405s > 405s BEGIN TEST caleg.R 405s 405s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 405s Copyright (C) 2024 The R Foundation for Statistical Computing 405s Platform: arm-unknown-linux-gnueabihf (32-bit) 405s 405s R is free software and comes with ABSOLUTELY NO WARRANTY. 405s You are welcome to redistribute it under certain conditions. 405s Type 'license()' or 'licence()' for distribution details. 405s 405s R is a collaborative project with many contributors. 405s Type 'contributors()' for more information and 405s 'citation()' on how to cite R or R packages in publications. 405s 405s Type 'demo()' for some demos, 'help()' for on-line help, or 405s 'help.start()' for an HTML browser interface to help. 405s Type 'q()' to quit R. 405s 405s > ## 405s > ## Calibration examples 405s > ## 405s > 405s > 405s > ## Example of calibration to first-stage clusters 405s > library(survey) 405s Loading required package: grid 405s Loading required package: Matrix 406s Loading required package: survival 406s 406s Attaching package: 'survey' 406s 406s The following object is masked from 'package:graphics': 406s 406s dotchart 406s 406s > data(api) 406s > 406s > clusters<-table(apiclus2$dnum) 406s > clusters<-clusters[clusters>1 & names(clusters)!="639"] 406s > apiclus2a<-subset(apiclus2, dnum %in% as.numeric(names(clusters))) 406s > 406s > dclus2<-svydesign(id=~dnum+snum, fpc=~fpc1+fpc2, data=apiclus2a) 406s > 406s > popclusters<-subset(apipop, dnum %in% as.numeric(names(clusters))) 406s > 406s > pop<-lapply(as.numeric(names(clusters)), function(cluster) { 406s + colSums(model.matrix(~api99, model.frame(~api99, subset(popclusters, dnum %in% cluster))))}) 406s > 406s > names(pop)<-names(clusters) 406s > 406s > dclus2g<-calibrate(dclus2, ~api99, pop,stage=1) 407s > 407s > svymean(~api99, dclus2) 407s mean SE 407s api99 642.14 31.434 407s > svymean(~api99, dclus2g) 407s mean SE 407s api99 654.49 29.82 407s > 407s > round(svyby(~api99, ~dnum, design=dclus2, svymean),4) 407s dnum api99 se 407s 83 83 694.3333 0.0000 407s 132 132 505.0000 0.0000 407s 152 152 574.0000 0.0000 407s 173 173 894.7500 0.0000 407s 198 198 533.7500 0.0000 407s 200 200 589.8000 6.8335 407s 228 228 477.0000 0.0000 407s 295 295 646.4000 0.0000 407s 302 302 903.5000 0.0000 407s 403 403 852.4000 0.0000 407s 452 452 533.0000 0.0000 407s 480 480 614.2000 0.0000 407s 523 523 580.5000 0.0000 407s 534 534 564.6000 0.0000 407s 549 549 896.2000 0.0000 407s 552 552 730.0000 0.0000 407s 570 570 518.4000 7.5478 407s 575 575 800.8000 4.2513 407s 596 596 785.6000 2.4155 407s 620 620 591.6000 10.5869 407s 638 638 560.2000 4.0954 407s 674 674 760.0000 0.0000 407s 679 679 610.2500 0.0000 407s 687 687 718.6667 0.0000 407s 701 701 651.5000 0.0000 407s 711 711 690.5000 0.0000 407s 731 731 702.0000 2.1744 407s 768 768 562.5000 0.0000 407s 781 781 854.4000 0.7456 407s > 407s > round(svyby(~api99, ~dnum, design=dclus2g, svymean),4) 407s dnum api99 se 407s 83 83 694.3333 0 407s 132 132 505.0000 0 407s 152 152 574.0000 0 407s 173 173 894.7500 0 407s 198 198 533.7500 0 407s 200 200 567.5455 0 407s 228 228 477.0000 0 407s 295 295 646.4000 0 407s 302 302 903.5000 0 407s 403 403 852.4000 0 407s 452 452 533.0000 0 407s 480 480 614.2000 0 407s 523 523 580.5000 0 407s 534 534 564.6000 0 407s 549 549 896.2000 0 407s 552 552 730.0000 0 407s 570 570 548.9444 0 407s 575 575 824.5357 0 407s 596 596 787.5714 0 407s 620 620 609.3750 0 407s 638 638 585.6429 0 407s 674 674 760.0000 0 407s 679 679 610.2500 0 407s 687 687 718.6667 0 407s 701 701 651.5000 0 407s 711 711 690.5000 0 407s 731 731 700.6667 0 407s 768 768 562.5000 0 407s 781 781 851.0000 0 407s > 407s > ## Averaging to first stage 407s > 407s > dclus1<- svydesign(id = ~dnum, weights = ~pw, data = apiclus1, fpc = ~fpc) 407s > pop<-colSums(cbind(1,apipop$enroll),na.rm=TRUE) 407s > 407s > dclus1g<-calibrate(dclus1, ~enroll, pop, aggregate=1) 407s > 407s > svytotal(~enroll,dclus1g) 407s total SE 407s enroll 3811472 0 407s > svytotal(~api.stu,dclus1g) 407s total SE 407s api.stu 3242857 38967 407s > 407s > #variation within clusters should be zero 407s > all.equal(0, max(ave(weights(dclus1g),dclus1g$cluster,FUN=var),na.rm=TRUE)) 407s [1] TRUE 407s > 407s > ##bounded weights 407s > dclus1g<-calibrate(dclus1, ~enroll, pop) 407s > range(weights(dclus1g)/weights(dclus1)) 407s [1] 0.7906782 1.7891164 407s > dclus1gb<-calibrate(dclus1, ~enroll, pop, bounds=c(.6,1.5)) 407s > range(weights(dclus1gb)/weights(dclus1)) 407s [1] 0.7198751 1.5000000 407s > 407s > ## Ratio estimators 407s > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 407s > svytotal(~api.stu,dstrat) 407s total SE 407s api.stu 3086009 99477 407s > common<-svyratio(~api.stu, ~enroll, dstrat, separate=FALSE) 407s > total.enroll<-sum(apipop$enroll,na.rm=TRUE) 407s > predict(common, total=total.enroll) 407s $total 407s enroll 407s api.stu 3190038 407s 407s $se 407s enroll 407s api.stu 29565.98 407s 407s > dstratg<-calibrate(dstrat,~enroll-1, total.enroll, variance=1) 407s > svytotal(~api.stu, dstratg) 407s total SE 407s api.stu 3190038 29566 407s > 407s > ## postStratify vs calibrate in stratified sample (Ben French) 407s > set.seed(17) 407s > dat<-data.frame(y=rep(0:1,each=100),x=rnorm(200)+2*rep(0:1,each=100), 407s + z=rbinom(200,1,.2), fpc=rep(c(100,10000),each=100)) 407s > dat$w<-ifelse(dat$y,dat$z,1-dat$z) 407s > popw<-data.frame(w=c("0","1"), Freq=c(2000,8000)) 407s > des<-svydesign(id=~1,fpc=~fpc, data=dat,strata=~y) 407s > postStratify(des,~w,popw)->dps 407s > dcal<-calibrate(des,~factor(w), pop=c(10000,8000)) 407s > 407s > all.equal(SE(svymean(~x,dcal)),SE(svymean(~x,dps))) 407s [1] TRUE 407s > 407s > ## missing data in calibrated design 407s > dps$variables$z[1]<-NA 407s > summary(svyglm(y~z+x,design=dps,family=quasibinomial)) 407s 407s Call: 407s svyglm(formula = y ~ z + x, design = dps, family = quasibinomial) 407s 407s Survey design: 407s postStratify(des, ~w, popw) 407s 407s Coefficients: 407s Estimate Std. Error t value Pr(>|t|) 407s (Intercept) -0.1203 0.3380 -0.356 0.722 407s z 6.2118 0.6451 9.630 <2e-16 *** 407s x 2.2602 0.2514 8.992 <2e-16 *** 407s --- 407s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 407s 407s (Dispersion parameter for quasibinomial family taken to be 1.919987) 407s 407s Number of Fisher Scoring iterations: 9 407s 407s > 407s > ## Ratio estimator using the heteroskedasticity parameter (Daniel Oehm) 407s > # should match the ratio estmate above 407s > dstratgh <- calibrate(dstrat,~enroll-1, total.enroll, variance=apistrat$enroll) 407s > svytotal(~api.stu, dstratgh) 407s total SE 407s api.stu 3190038 29566 407s > 407s > ## individual boundary constraints as multiplicative values (Daniel Oehm) 407s > bnds <- list( 407s + lower = c(1, 1, rep(-Inf, nrow(apistrat)-2)), 407s + upper = c(1, 1, rep(Inf, nrow(apistrat)-2))) # the first two weights will remain unchanged the others are free to move 407s > lapply(bnds, head) 407s $lower 407s [1] 1 1 -Inf -Inf -Inf -Inf 407s 407s $upper 407s [1] 1 1 Inf Inf Inf Inf 407s 407s > dstratg1<-calibrate(dstrat, ~enroll-1, total.enroll, bounds = bnds, variance=apistrat$enroll) 407s > svytotal(~api.stu, dstratg1) 407s total SE 407s api.stu 3190133 29561 407s > head(weights(dstrat)) 407s 1 2 3 4 5 6 407s 44.21 44.21 44.21 44.21 44.21 44.21 407s > head(weights(dstratg1)) 407s 1 2 3 4 5 6 407s 44.21000 44.21000 45.72055 45.72055 45.72055 45.72055 407s > all.equal(weights(dstrat)[1:2], weights(dstratg1)[1:2]) 407s [1] TRUE 407s > 407s > ## individual boundary constraints as constant values (Daniel Oehm) 407s > bnds <- list( 407s + lower = c(44.21, 44.21, rep(-Inf, nrow(apistrat)-2)), 407s + upper = c(44.21, 44.21, rep(Inf, nrow(apistrat)-2))) # the first two weights will remain unchanged 407s > lapply(bnds, head) 407s $lower 407s [1] 44.21 44.21 -Inf -Inf -Inf -Inf 407s 407s $upper 407s [1] 44.21 44.21 Inf Inf Inf Inf 407s 407s > dstratg2<-calibrate(dstrat, ~enroll-1, total.enroll, bounds = bnds, bounds.const = TRUE, variance=apistrat$enroll) 407s > svytotal(~api.stu, dstratg2) 407s total SE 407s api.stu 3190133 29561 407s > head(weights(dstrat)) 407s 1 2 3 4 5 6 407s 44.21 44.21 44.21 44.21 44.21 44.21 407s > head(weights(dstratg2)) 407s 1 2 3 4 5 6 407s 44.21000 44.21000 45.72055 45.72055 45.72055 45.72055 407s > all.equal(round(weights(dstrat)[1:2], 8), round(weights(dstratg2)[1:2]), 8) # minor rounding error but all good 407s [1] TRUE 407s > 407s > # sparse matrix support (Daniel Oehm) 407s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 407s > pop.totals<-c(`(Intercept)`=6194, stypeH=755, stypeM=1018) 407s > dclus1g<-calibrate(dclus1, ~stype, pop.totals) 407s > svymean(~api00, dclus1g) 407s mean SE 407s api00 642.31 23.92 407s > svytotal(~enroll, dclus1g) 407s total SE 407s enroll 3680893 406293 407s > 407s > pop.totals<-c(`(Intercept)`=6194, stypeH=755, stypeM=1018) 407s > dclus1g<-calibrate(dclus1, ~stype, pop.totals, sparse = TRUE) 408s > svymean(~api00, dclus1g) 408s mean SE 408s api00 642.31 23.92 408s > svytotal(~enroll, dclus1g) 408s total SE 408s enroll 3680893 406293 408s > 408s > pop.totals<-c(`(Intercept)`=6194, stypeH=755, stypeM=1018) 408s > dclus1g<-calibrate(dclus1, ~stype, pop.totals, sparse = TRUE, calfun = "raking") 408s > svymean(~api00, dclus1g) 408s mean SE 408s api00 642.31 23.92 408s > svytotal(~enroll, dclus1g) 408s total SE 408s enroll 3680893 406293 408s > 408s BEGIN TEST check.R 408s 408s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 408s Copyright (C) 2024 The R Foundation for Statistical Computing 408s Platform: arm-unknown-linux-gnueabihf (32-bit) 408s 408s R is free software and comes with ABSOLUTELY NO WARRANTY. 408s You are welcome to redistribute it under certain conditions. 408s Type 'license()' or 'licence()' for distribution details. 408s 408s R is a collaborative project with many contributors. 408s Type 'contributors()' for more information and 408s 'citation()' on how to cite R or R packages in publications. 408s 408s Type 'demo()' for some demos, 'help()' for on-line help, or 408s 'help.start()' for an HTML browser interface to help. 408s Type 'q()' to quit R. 408s 408s > library(survey) 408s Loading required package: grid 408s Loading required package: Matrix 409s Loading required package: survival 409s 409s Attaching package: 'survey' 409s 409s The following object is masked from 'package:graphics': 409s 409s dotchart 409s 409s > data(fpc) 409s > ## test various possibilities for svydesign 409s > a<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, variables=~x, data=fpc, nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(weights = ~weight, ids = ~psuid, strata = ~stratid, 409s variables = ~x, data = fpc, nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7413 409s > a<-svydesign(weights=~weight, ids=~0, strata=~stratid, variables=~x, data=fpc, nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s Warning message: 409s In svydesign.default(ids = ~0, strata = ~stratid, variables = ~x, : 409s No weights or probabilities supplied, assuming equal probability 409s Warning message: 409s In svydesign.default(ids = ~psuid, strata = ~stratid, variables = ~x, : 409s No weights or probabilities supplied, assuming equal probability 409s Warning message: 409s In svydesign.default(ids = ~psuid, variables = ~x, data = fpc, nest = TRUE) : 409s No weights or probabilities supplied, assuming equal probability 409s svydesign(weights = ~weight, ids = ~0, strata = ~stratid, variables = ~x, 409s data = fpc, nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7413 409s > a<-svydesign(weights=1, ids=~0, strata=~stratid, variables=~x, data=fpc, nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(weights = 1, ids = ~0, strata = ~stratid, variables = ~x, 409s data = fpc, nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 44.2 6.237 409s > a<-svydesign(ids=~0, strata=~stratid, variables=~x, data=fpc, nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(ids = ~0, strata = ~stratid, variables = ~x, data = fpc, 409s nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.525 0.7796 409s > a<-svydesign(ids=~0, strata=~stratid, prob=~I(1/weight),variables=~x, data=fpc, nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(ids = ~0, strata = ~stratid, prob = ~I(1/weight), variables = ~x, 409s data = fpc, nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7413 409s > a<-svydesign(ids=~psuid, strata=~stratid, variables=~x, data=fpc, nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(ids = ~psuid, strata = ~stratid, variables = ~x, data = fpc, 409s nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.525 0.7796 409s > a<-svydesign(ids=~psuid, variables=~x, data=fpc, nest=TRUE) 409s > a 409s 1 - level Cluster Sampling design (with replacement) 409s With (5) clusters. 409s svydesign(ids = ~psuid, variables = ~x, data = fpc, nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.525 0.838 409s > a<-svydesign(ids=~psuid, weights=~weight, variables=~x, data=fpc, nest=TRUE) 409s > a 409s 1 - level Cluster Sampling design (with replacement) 409s With (5) clusters. 409s svydesign(ids = ~psuid, weights = ~weight, variables = ~x, data = fpc, 409s nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7938 409s > a<-svydesign(ids=~stratid+psuid, weights=~weight, variables=~x, data=fpc) 409s Warning message: 409s In svydesign.default(ids = ~stratid + psuid, variables = ~x, data = fpc) : 409s No weights or probabilities supplied, assuming equal probability 409s > a 409s 2 - level Cluster Sampling design (with replacement) 409s With (2, 8) clusters. 409s svydesign(ids = ~stratid + psuid, weights = ~weight, variables = ~x, 409s data = fpc) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.5465 409s > a<-svydesign(ids=~stratid+psuid, variables=~x, data=fpc) 409s > a 409s 2 - level Cluster Sampling design (with replacement) 409s With (2, 8) clusters. 409s svydesign(ids = ~stratid + psuid, variables = ~x, data = fpc) 409s > svymean(~x,a) 409s mean SE 409s x 5.525 0.5188 409s > a<-svydesign(weights=fpc$weight, ids=fpc$psuid, strata=fpc$stratid, variables=fpc[,"x",drop=FALSE], nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(weights = fpc$weight, ids = fpc$psuid, strata = fpc$stratid, 409s variables = fpc[, "x", drop = FALSE], nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7413 409s > a<-svydesign(weights=fpc$weight, ids=fpc$psuid, strata=fpc$stratid, variables=fpc[,4:6], nest=TRUE) 409s > a 409s Stratified Independent Sampling design (with replacement) 409s svydesign(weights = fpc$weight, ids = fpc$psuid, strata = fpc$stratid, 409s variables = fpc[, 4:6], nest = TRUE) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7413 409s > 409s > a<-svydesign(weights=fpc$weight, ids=fpc$psuid, variables=fpc[,4:6], fpc=rep(27,8)) 409s > a 409s 1 - level Cluster Sampling design 409s With (5) clusters. 409s svydesign(weights = fpc$weight, ids = fpc$psuid, variables = fpc[, 409s 4:6], fpc = rep(27, 8)) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.7165 409s > 409s > a<-svydesign(weights=fpc$weight, ids=fpc$psuid, strata=fpc$stratid, nest=TRUE, variables=fpc[,4:6], fpc=fpc$Nh) 409s > a 409s Stratified Independent Sampling design 409s svydesign(weights = fpc$weight, ids = fpc$psuid, strata = fpc$stratid, 409s nest = TRUE, variables = fpc[, 4:6], fpc = fpc$Nh) 409s > svymean(~x,a) 409s mean SE 409s x 5.4481 0.616 409s > 409s BEGIN TEST contrast-replicates.R 409s 409s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 409s Copyright (C) 2024 The R Foundation for Statistical Computing 409s Platform: arm-unknown-linux-gnueabihf (32-bit) 409s 409s R is free software and comes with ABSOLUTELY NO WARRANTY. 409s You are welcome to redistribute it under certain conditions. 409s Type 'license()' or 'licence()' for distribution details. 409s 409s R is a collaborative project with many contributors. 409s Type 'contributors()' for more information and 409s 'citation()' on how to cite R or R packages in publications. 409s 409s Type 'demo()' for some demos, 'help()' for on-line help, or 409s 'help.start()' for an HTML browser interface to help. 409s Type 'q()' to quit R. 409s 409s > ## test use of replicates in svyby, svycontrast 409s > library(survey) 409s Loading required package: grid 409s Loading required package: Matrix 410s Loading required package: survival 410s 410s Attaching package: 'survey' 410s 410s The following object is masked from 'package:graphics': 410s 410s dotchart 410s 410s > 410s > data(api) 410s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 410s > rclus1<-as.svrepdesign(dclus1) 410s > 410s > meanlogs_without<-svyby(~log(enroll),~stype,svymean, design=rclus1,covmat=TRUE) 410s > c_without<-svycontrast(meanlogs_without, quote(exp(E-H))) 410s > vcov(c_without) 410s contrast 410s contrast 0.06862947 410s > 410s > meanlogs_with<-svyby(~log(enroll),~stype,svymean, design=rclus1,covmat=TRUE,return.replicates=TRUE) 410s > 410s > c_with<-svycontrast(meanlogs_with, quote(exp(E-H))) 410s > 410s > v_with<- vcov(rclus1, c_with$replicates) 410s > 410s > r<- attr(meanlogs_with, "replicates") 410s > vr_with<-vcov(rclus1,exp(r[,1]-r[,2])) 410s > 410s > stopifnot(all.equal(as.numeric(v_with),as.numeric(vr_with))) 410s > stopifnot(all.equal(as.numeric(v_with),as.numeric(vcov(c_with)))) 410s > 410s BEGIN TEST coxph-termtest.R 411s 411s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 411s Copyright (C) 2024 The R Foundation for Statistical Computing 411s Platform: arm-unknown-linux-gnueabihf (32-bit) 411s 411s R is free software and comes with ABSOLUTELY NO WARRANTY. 411s You are welcome to redistribute it under certain conditions. 411s Type 'license()' or 'licence()' for distribution details. 411s 411s R is a collaborative project with many contributors. 411s Type 'contributors()' for more information and 411s 'citation()' on how to cite R or R packages in publications. 411s 411s Type 'demo()' for some demos, 'help()' for on-line help, or 411s 'help.start()' for an HTML browser interface to help. 411s Type 'q()' to quit R. 411s 411s > library(survey) 411s Loading required package: grid 411s Loading required package: Matrix 412s Loading required package: survival 412s 412s Attaching package: 'survey' 412s 412s The following object is masked from 'package:graphics': 412s 412s dotchart 412s 412s > library(survival) 412s > set.seed(2021-6-25) 412s > test1 <- list(time=c(4,3,1,1,2,2,3), 412s + status=c(1,1,1,0,1,1,0), 412s + x1=as.factor(rbinom(7, 2, 0.5)), 412s + x=c(0,2,1,1,1,0,0)) 412s > # Fit a stratified model 412s > mod_c <- coxph(Surv(time, status) ~ x1 + x, test1) 412s > mod_d <- coxph(Surv(time, status) ~ x + x1, test1) 412s > stopifnot(all.equal(regTermTest(mod_c, ~x1, df = Inf)[c("chisq","df","test.terms","p")], 412s + regTermTest(mod_d, ~x1, df = Inf)[c("chisq","df","test.terms","p")])) 412s > 412s > data(pbc, package="survival") 412s > 412s > pbc$randomized<-with(pbc, !is.na(trt) & trt>0) 412s > biasmodel<-glm(randomized~age*edema,data=pbc,family=binomial) 412s > pbc$randprob<-fitted(biasmodel) 412s > if (is.null(pbc$albumin)) pbc$albumin<-pbc$alb ##pre2.9.0 412s > 412s > dpbc<-svydesign(id=~1, prob=~randprob, strata=~edema, data=subset(pbc,randomized)) 412s > library(splines) 412s > model<-svycoxph(formula = Surv(time, status > 0) ~ bili + protime + albumin+ns(bili,4)[,1:3], design = dpbc) 412s > test<-regTermTest(model, ~ns(bili,4)[,1:3],method="LRT") 412s > stopifnot(all.equal(test$chisq, 47.314, tolerance=1e-4)) 412s > stopifnot(all.equal(test$lambda, c(1.4764260, 1.0109836, 0.6923415),tolerance=1e-4)) 412s > 412s BEGIN TEST deff.R 412s 412s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 412s Copyright (C) 2024 The R Foundation for Statistical Computing 412s Platform: arm-unknown-linux-gnueabihf (32-bit) 412s 412s R is free software and comes with ABSOLUTELY NO WARRANTY. 412s You are welcome to redistribute it under certain conditions. 412s Type 'license()' or 'licence()' for distribution details. 412s 412s R is a collaborative project with many contributors. 412s Type 'contributors()' for more information and 412s 'citation()' on how to cite R or R packages in publications. 412s 412s Type 'demo()' for some demos, 'help()' for on-line help, or 412s 'help.start()' for an HTML browser interface to help. 412s Type 'q()' to quit R. 412s 412s > ## from Takahiro Tsuchiya 412s > library(survey) 412s Loading required package: grid 412s Loading required package: Matrix 413s Loading required package: survival 414s > kigyo<-read.table(tmp<-textConnection(" obs uriage srs.w pps.w 414s + 1 1 15 100 20 414s + 2 2 143 100 200 414s + 3 3 21 100 11 414s + 4 4 51 100 25 414s + 5 5 337 100 550 414s + 6 6 50 100 30 414s + 7 7 274 100 250 414s + 8 8 145 100 100 414s + 9 9 15 100 10 414s + 10 10 86 100 55 414s + ",open="r"),header=TRUE) 414s > close(tmp) 414s > des.srs <- svydesign(ids=~1, weights=~srs.w, data=kigyo) 414s 414s Attaching package: 'survey' 414s 414s The following object is masked from 'package:graphics': 414s 414s dotchart 414s 414s > (res.srs <- svymean(~uriage, des.srs, deff=TRUE)) 414s mean SE DEff 414s uriage 113.700 35.626 1.0101 414s > (SE(res.srs)^2) / ((1-10/1000) * coef(svyvar(~uriage, des.srs)) / 10) 414s uriage 414s uriage 1.010101 414s > 414s > (tres.srs <- svytotal(~uriage, des.srs, deff=TRUE)) 414s total SE DEff 414s uriage 113700 35626 1.0101 414s > (SE(tres.srs)^2) / (1000^2 * (1-10/1000) * coef(svyvar(~uriage, des.srs)) / 10) 414s uriage 414s uriage 1.010101 414s > 414s > 414s > des.pps <- svydesign(ids=~1, weights=~pps.w, data=kigyo) 414s > (res.pps <- svymean(~uriage, des.pps, deff='replace')) 414s mean SE DEff 414s uriage 243.914 48.752 1.9741 414s > (SE(res.pps)^2) / (coef(svyvar(~uriage, des.pps)) / 10) 414s uriage 414s uriage 1.974067 414s > (tres.pps <- svytotal(~uriage, des.pps, deff='replace')) 414s total SE DEff 414s uriage 305136 184965 18.157 414s > (N.hat <- sum(weights(des.pps))) 414s [1] 1251 414s > (SE(tres.pps)^2) / (N.hat^2 * coef(svyvar(~uriage, des.pps)) / 10) 414s uriage 414s uriage 18.15669 414s > 414s BEGIN TEST defftest.R 414s 414s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 414s Copyright (C) 2024 The R Foundation for Statistical Computing 414s Platform: arm-unknown-linux-gnueabihf (32-bit) 414s 414s R is free software and comes with ABSOLUTELY NO WARRANTY. 414s You are welcome to redistribute it under certain conditions. 414s Type 'license()' or 'licence()' for distribution details. 414s 414s R is a collaborative project with many contributors. 414s Type 'contributors()' for more information and 414s 'citation()' on how to cite R or R packages in publications. 414s 414s Type 'demo()' for some demos, 'help()' for on-line help, or 414s 'help.start()' for an HTML browser interface to help. 414s Type 'q()' to quit R. 414s 414s > library(survey) 414s Loading required package: grid 414s Loading required package: Matrix 415s Loading required package: survival 416s 416s Attaching package: 'survey' 416s 416s > 416s > data(api) 416s The following object is masked from 'package:graphics': 416s 416s dotchart 416s 416s > 416s > ## one-stage cluster sample 416s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 416s > 416s > # svyglm model 416s > mod <- svyglm(api99 ~ enroll + api.stu, design = dclus1, deff = TRUE) 416s > 416s > #deffs returned from svyglm model - implausibly high 416s > deff(mod) 416s (Intercept) enroll api.stu 416s 1.919945 2.500983 2.686102 416s > #> (Intercept) enroll api.stu 416s > #> 351.3500 457.6799 491.5567 416s > 416s > # run mod with same data and glm() 416s > srs_mod <- glm(api99 ~ enroll + api.stu, data = apiclus1) 416s > 416s > # manually calculate deffs 416s > 416s > clust_se <- summary(mod)$coefficients[,2] 416s > srs_se <- summary(srs_mod)$coefficients[,2] 416s > 416s > deffs <- clust_se^2 / srs_se^2 416s > stopifnot(all.equal(deffs, deff(mod))) 416s > 416s > 416s BEGIN TEST domain.R 416s 416s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 416s Copyright (C) 2024 The R Foundation for Statistical Computing 416s Platform: arm-unknown-linux-gnueabihf (32-bit) 416s 416s R is free software and comes with ABSOLUTELY NO WARRANTY. 416s You are welcome to redistribute it under certain conditions. 416s Type 'license()' or 'licence()' for distribution details. 416s 416s R is a collaborative project with many contributors. 416s Type 'contributors()' for more information and 416s 'citation()' on how to cite R or R packages in publications. 416s 416s Type 'demo()' for some demos, 'help()' for on-line help, or 416s 'help.start()' for an HTML browser interface to help. 416s Type 'q()' to quit R. 416s 416s > ## 416s > ## Domain means can be written as ratio estimators or as regression coefficients 416s > ## 416s > ## This code checks that subsetting the design object gives the same results as 416s > ## these approaches. 416s > ## 416s > 416s > 416s > library(survey) 416s Loading required package: grid 416s Loading required package: Matrix 417s Loading required package: survival 417s 417s Attaching package: 'survey' 417s 417s The following object is masked from 'package:graphics': 417s 417s dotchart 417s 417s > data(fpc) 417s > dfpc<-svydesign(id=~psuid,strat=~stratid,weight=~weight,data=fpc,nest=TRUE) 417s > dsub<-subset(dfpc,x>4) 417s > (m1<-svymean(~x,design=dsub)) 417s mean SE 417s x 6.195 0.7555 417s > 417s > ## These should give the same domain estimates and standard errors 417s > (m2<-svyby(~x,~I(x>4),design=dfpc, svymean,keep.var=TRUE)) 417s I(x > 4) x se 417s FALSE FALSE 3.314286 0.3117042 417s TRUE TRUE 6.195000 0.7555129 417s > m3<-svyglm(x~I(x>4)+0,design=dfpc) 417s > summary(m3) 417s 417s Call: 417s svyglm(formula = x ~ I(x > 4) + 0, design = dfpc) 417s 417s Survey design: 417s svydesign(id = ~psuid, strat = ~stratid, weight = ~weight, data = fpc, 417s nest = TRUE) 417s 417s Coefficients: 417s Estimate Std. Error t value Pr(>|t|) 417s I(x > 4)FALSE 3.3143 0.3117 10.63 0.000127 *** 417s I(x > 4)TRUE 6.1950 0.7555 8.20 0.000439 *** 417s --- 417s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 417s 417s (Dispersion parameter for gaussian family taken to be 2.557379) 417s 417s Number of Fisher Scoring iterations: 2 417s 417s > (m4<-svyratio(~I(x*(x>4)),~as.numeric(x>4), dfpc)) 417s Ratio estimator: svyratio.survey.design2(~I(x * (x > 4)), ~as.numeric(x > 4), 417s dfpc) 417s Ratios= 417s as.numeric(x > 4) 417s I(x * (x > 4)) 6.195 417s SEs= 417s as.numeric(x > 4) 417s I(x * (x > 4)) 0.7555129 417s > stopifnot(isTRUE(all.equal(SE(m2), as.vector(SE(m3))))) 417s > stopifnot(isTRUE(all.equal(SE(m2)[2], as.vector(SE(m4))))) 417s > 417s > ## with strata 417s > data(api) 417s > dstrat<-svydesign(id=~1, strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 417s > m1<-svymean(~enroll, subset(dstrat, comp.imp=="Yes")) 417s > m2<-svyglm(enroll~comp.imp-1, dstrat) 417s > m3<- svyratio(~I(enroll*(comp.imp=="Yes")), ~as.numeric(comp.imp=="Yes"), dstrat) 417s > stopifnot(isTRUE(all.equal(as.vector(SE(m2)["comp.impYes"]), as.vector(SE(m1))))) 417s > stopifnot(isTRUE( all.equal(as.vector(SE(m1)), as.vector(drop(SE(m3)))))) 417s > 417s > ## with calibration 417s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 417s > pop.totals<-c(`(Intercept)`=6194, stypeH=755, stypeM=1018) 417s > (dclus1g3 <- calibrate(dclus1, ~stype+api99, c(pop.totals, api99=3914069))) 417s 1 - level Cluster Sampling design 417s With (15) clusters. 417s calibrate(dclus1, ~stype + api99, c(pop.totals, api99 = 3914069)) 417s > 417s > m1<-svymean(~api00, subset(dclus1g3, comp.imp=="Yes")) 417s > m3<-svyratio(~I(api00*(comp.imp=="Yes")), ~as.numeric(comp.imp=="Yes"), dclus1g3) 417s > m2<-svyglm(api00~comp.imp-1, dclus1g3) 417s > stopifnot(isTRUE( all.equal(as.vector(SE(m2)["comp.impYes"]), as.vector(SE(m1))))) 417s > stopifnot(isTRUE( all.equal(as.vector(SE(m1)), as.vector(drop(SE(m3)))))) 417s > 417s > ## with raking 417s > pop.types <- data.frame(stype=c("E","H","M"), Freq=c(4421,755,1018)) 417s > pop.schwide <- data.frame(sch.wide=c("No","Yes"), Freq=c(1072,5122)) 417s > dclus1r<-rake(dclus1, list(~stype,~sch.wide), list(pop.types, pop.schwide)) 417s > m1<-svymean(~api00, subset(dclus1r, comp.imp=="Yes")) 417s > m2<-svyglm(api00~comp.imp-1, dclus1r) 417s > m3<-svyratio(~I(api00*(comp.imp=="Yes")), ~as.numeric(comp.imp=="Yes"), dclus1r) 417s > stopifnot(isTRUE( all.equal(as.vector(SE(m2)["comp.impYes"]), as.vector(SE(m1))))) 417s > stopifnot(isTRUE( all.equal(as.vector(SE(m1)), as.vector(drop(SE(m3)))))) 417s > 417s > 417s > 417s > ## 417s > ## based on bug report from Takahiro Tsuchiya for version 3.4 417s > ## 417s > rei<-read.table(tmp<-textConnection( 417s + " id N n.a h n.ah n.h sub y 417s + 1 1 300 20 1 12 5 TRUE 1 417s + 2 2 300 20 1 12 5 TRUE 2 417s + 3 3 300 20 1 12 5 TRUE 3 417s + 4 4 300 20 1 12 5 TRUE 4 417s + 5 5 300 20 1 12 5 TRUE 5 417s + 6 6 300 20 1 12 5 FALSE NA 417s + 7 7 300 20 1 12 5 FALSE NA 417s + 8 8 300 20 1 12 5 FALSE NA 417s + 9 9 300 20 1 12 5 FALSE NA 417s + 10 10 300 20 1 12 5 FALSE NA 417s + 11 11 300 20 1 12 5 FALSE NA 417s + 12 12 300 20 1 12 5 FALSE NA 417s + 13 13 300 20 2 8 3 TRUE 6 417s + 14 14 300 20 2 8 3 TRUE 7 417s + 15 15 300 20 2 8 3 TRUE 8 417s + 16 16 300 20 2 8 3 FALSE NA 417s + 17 17 300 20 2 8 3 FALSE NA 417s + 18 18 300 20 2 8 3 FALSE NA 417s + 19 19 300 20 2 8 3 FALSE NA 417s + 20 20 300 20 2 8 3 FALSE NA 417s + "), header=TRUE) 417s > close(tmp) 417s > 417s > 417s > des.rei2 <- twophase(id=list(~id,~id), strata=list(NULL,~h), 417s + fpc=list(~N,NULL), subset=~sub, data=rei, method="full") 417s > tot2<- svytotal(~y, subset(des.rei2, y>3)) 418s > 418s > rei$y<-rei$y*(rei$y>3) 418s > ## based on Sarndal et al (9.4.14) 418s > rei$w.ah <- rei$n.ah / rei$n.a 418s > a.rei <- aggregate(rei, by=list(rei$h), mean, na.rm=TRUE) 418s > a.rei$S.ysh <- tapply(rei$y, rei$h, var, na.rm=TRUE) 418s > a.rei$y.u <- sum(a.rei$w.ah * a.rei$y) 418s > V <- with(a.rei, sum(N * (N-1) * ((n.ah-1)/(n.a-1) - (n.h-1)/(N-1)) * w.ah * S.ysh / n.h)) 418s > V <- V + with(a.rei, sum(N * (N-n.a) * w.ah * (y - y.u)^2 / (n.a-1))) 418s > 418s > a.rei$f.h<-with(a.rei, n.h/n.ah) 418s > Vphase2<-with(a.rei, sum(N*N*w.ah^2* ((1-f.h)/n.h) *S.ysh)) 418s > 418s > a.rei$f<-with(a.rei, n.a/N) 418s > a.rei$delta.h<-with(a.rei, (1/n.h)*(n.a-n.ah)/(n.a-1)) 418s > Vphase1<-with(a.rei, sum(N*N*((1-f)/n.a)*( w.ah*(1-delta.h)*S.ysh+ ((n.a)/(n.a-1))*w.ah*(y-y.u)^2))) 418s > 418s > V 418s [1] 70761.47 418s > Vphase1 418s [1] 44325.47 418s > Vphase2 418s [1] 26436 418s > vcov(tot2) 418s [,1] 418s [1,] 70761.47 418s attr(,"phases") 418s attr(,"phases")$phase1 418s [,1] 418s [1,] 44325.47 418s 418s attr(,"phases")$phase2 418s [,1] 418s [1,] 26436 418s 418s > 418s > ## comparing to regression 418s > reg<-svyglm(y~I(y<4), design=des.rei2) 418s > mn<-svymean(~y, subset(des.rei2,y>3)) 418s > all.equal(as.vector(coef(reg))[1],as.vector(coef(mn))) 418s [1] TRUE 418s > all.equal(as.vector(SE(reg))[1],as.vector(SE(mn))) 418s [1] TRUE 418s > vcov(mn) 418s [,1] 418s [1,] 0.3292258 418s attr(,"phases") 418s attr(,"phases")$phase1 418s [,1] 418s [1,] 0.1599264 418s 418s attr(,"phases")$phase2 418s [,1] 418s [1,] 0.1692994 418s 418s > vcov(reg) 418s (Intercept) I(y < 4)TRUE 418s (Intercept) 0.3292258 -0.3292258 418s I(y < 4)TRUE -0.3292258 0.5901907 418s attr(,"phases") 418s attr(,"phases")$phase1 418s (Intercept) I(y < 4)TRUE 418s (Intercept) 0.1599264 -0.1599264 418s I(y < 4)TRUE -0.1599264 0.2588542 418s 418s attr(,"phases")$phase2 418s (Intercept) I(y < 4)TRUE 418s (Intercept) 0.1692994 -0.1692994 418s I(y < 4)TRUE -0.1692994 0.3313365 418s 418s > 418s > 418s BEGIN TEST fpc.R 418s 418s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 418s Copyright (C) 2024 The R Foundation for Statistical Computing 418s Platform: arm-unknown-linux-gnueabihf (32-bit) 418s 418s R is free software and comes with ABSOLUTELY NO WARRANTY. 418s You are welcome to redistribute it under certain conditions. 418s Type 'license()' or 'licence()' for distribution details. 418s 418s R is a collaborative project with many contributors. 418s Type 'contributors()' for more information and 418s 'citation()' on how to cite R or R packages in publications. 418s 418s Type 'demo()' for some demos, 'help()' for on-line help, or 418s 'help.start()' for an HTML browser interface to help. 418s Type 'q()' to quit R. 418s 418s Loading required package: grid 418s > library(survey) 418s Loading required package: Matrix 419s Loading required package: survival 419s 419s Attaching package: 'survey' 419s 419s The following object is masked from 'package:graphics': 419s 419s dotchart 419s 419s > ## check many permutations of fpc specification 419s > example(fpc) 419s 419s fpc> data(fpc) 419s 419s fpc> fpc 419s stratid psuid weight nh Nh x 419s 1 1 1 3 5 15 2.8 419s 2 1 2 3 5 15 4.1 419s 3 1 3 3 5 15 6.8 419s 4 1 4 3 5 15 6.8 419s 5 1 5 3 5 15 9.2 419s 6 2 1 4 3 12 3.7 419s 7 2 2 4 3 12 6.6 419s 8 2 3 4 3 12 4.2 419s 419s fpc> withoutfpc<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, variables=~x, 419s fpc+ data=fpc, nest=TRUE) 419s 419s fpc> withoutfpc 419s Stratified Independent Sampling design (with replacement) 419s withoutfpc<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, variables=~x, 419s data=fpc, nest=TRUE) 419s 419s fpc> svymean(~x, withoutfpc) 419s mean SE 419s x 5.4481 0.7413 419s 419s fpc> withfpc<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, 419s fpc+ fpc=~Nh, variables=~x, data=fpc, nest=TRUE) 419s 419s fpc> withfpc 419s Stratified Independent Sampling design 419s withfpc<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, 419s fpc=~Nh, variables=~x, data=fpc, nest=TRUE) 419s 419s fpc> svymean(~x, withfpc) 419s mean SE 419s x 5.4481 0.616 419s 419s fpc> ## Other equivalent forms 419s fpc> withfpc<-svydesign(prob=~I(1/weight), ids=~psuid, strata=~stratid, 419s fpc+ fpc=~Nh, variables=~x, data=fpc, nest=TRUE) 419s 419s fpc> svymean(~x, withfpc) 419s mean SE 419s x 5.4481 0.616 419s 419s fpc> withfpc<-svydesign(weights=~weight, ids=~psuid, strata=~stratid, 419s fpc+ fpc=~I(nh/Nh), variables=~x, data=fpc, nest=TRUE) 419s 419s fpc> svymean(~x, withfpc) 419s mean SE 419s x 5.4481 0.616 419s 419s fpc> withfpc<-svydesign(weights=~weight, ids=~interaction(stratid,psuid), 419s fpc+ strata=~stratid, fpc=~I(nh/Nh), variables=~x, data=fpc) 419s 419s fpc> svymean(~x, withfpc) 419s mean SE 419s x 5.4481 0.616 419s 419s fpc> withfpc<-svydesign(ids=~psuid, strata=~stratid, fpc=~Nh, 419s fpc+ variables=~x,data=fpc,nest=TRUE) 419s 419s fpc> svymean(~x, withfpc) 419s mean SE 419s x 5.4481 0.616 419s 419s fpc> withfpc<-svydesign(ids=~psuid, strata=~stratid, 419s fpc+ fpc=~I(nh/Nh), variables=~x, data=fpc, nest=TRUE) 419s 419s fpc> svymean(~x, withfpc) 419s mean SE 419s x 5.4481 0.616 419s > 419s > 419s BEGIN TEST glm-scoping.R 419s 419s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 419s Copyright (C) 2024 The R Foundation for Statistical Computing 419s Platform: arm-unknown-linux-gnueabihf (32-bit) 419s 419s R is free software and comes with ABSOLUTELY NO WARRANTY. 419s You are welcome to redistribute it under certain conditions. 419s Type 'license()' or 'licence()' for distribution details. 419s 419s R is a collaborative project with many contributors. 419s Type 'contributors()' for more information and 419s 'citation()' on how to cite R or R packages in publications. 419s 419s Type 'demo()' for some demos, 'help()' for on-line help, or 419s 'help.start()' for an HTML browser interface to help. 419s Type 'q()' to quit R. 419s 419s > ## bug report from Thomas Leeper, fixed in version 3.32-3 419s > 419s > library("survey") 419s Loading required package: grid 419s Loading required package: Matrix 420s Loading required package: survival 421s 421s Attaching package: 'survey' 421s 421s The following object is masked from 'package:graphics': 421s 421s dotchart 421s 421s > data(api) 421s > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 421s > 421s > # pass `family` directly (WORKS!) 421s > svyglm(api00~ell+meals+mobility, design=dstrat, family = gaussian()) 421s Stratified Independent Sampling design 421s svydesign(id = ~1, strata = ~stype, weights = ~pw, data = apistrat, 421s fpc = ~fpc) 421s 421s Call: svyglm(formula = api00 ~ ell + meals + mobility, design = dstrat, 421s family = gaussian()) 421s 421s Coefficients: 421s (Intercept) ell meals mobility 421s 820.8873 -0.4806 -3.1415 0.2257 421s 421s Degrees of Freedom: 199 Total (i.e. Null); 194 Residual 421s Null Deviance: 3023000 421s Residual Deviance: 1029000 AIC: 2308 421s > 421s > # passing `family` via ... (WORKS!) 421s > myfun1 <- function(formula, design, ...) { 421s + svyglm(formula, design = design, ...) 421s + } 421s > myfun1(api00~ell+meals+mobility, design=dstrat, family = gaussian()) 421s Stratified Independent Sampling design 421s svydesign(id = ~1, strata = ~stype, weights = ~pw, data = apistrat, 421s fpc = ~fpc) 421s 421s Call: svyglm(formula = formula, design = design, family = ..1) 421s 421s Coefficients: 421s (Intercept) ell meals mobility 421s 820.8873 -0.4806 -3.1415 0.2257 421s 421s Degrees of Freedom: 199 Total (i.e. Null); 194 Residual 421s Null Deviance: 3023000 421s Residual Deviance: 1029000 AIC: 2308 421s > 421s > # passing `family` via default argument (DOES NOT WORK!) 421s > myfun2 <- function(formula, design, family = gaussian()) { 421s + svyglm(formula, design = design, family = family) 421s + } 421s > myfun2(api00~ell+meals+mobility, design=dstrat, family = gaussian()) 421s Stratified Independent Sampling design 421s svydesign(id = ~1, strata = ~stype, weights = ~pw, data = apistrat, 421s fpc = ~fpc) 421s 421s Call: svyglm(formula = formula, design = design, family = family) 421s 421s Coefficients: 421s (Intercept) ell meals mobility 421s 820.8873 -0.4806 -3.1415 0.2257 421s 421s Degrees of Freedom: 199 Total (i.e. Null); 194 Residual 421s Null Deviance: 3023000 421s Residual Deviance: 1029000 AIC: 2308 421s > 421s BEGIN TEST kalton.R 421s 421s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 421s Copyright (C) 2024 The R Foundation for Statistical Computing 421s Platform: arm-unknown-linux-gnueabihf (32-bit) 421s 421s R is free software and comes with ABSOLUTELY NO WARRANTY. 421s You are welcome to redistribute it under certain conditions. 421s Type 'license()' or 'licence()' for distribution details. 421s 421s R is a collaborative project with many contributors. 421s Type 'contributors()' for more information and 421s 'citation()' on how to cite R or R packages in publications. 421s 421s Type 'demo()' for some demos, 'help()' for on-line help, or 421s 'help.start()' for an HTML browser interface to help. 421s Type 'q()' to quit R. 421s 421s > library(survey) 421s Loading required package: grid 421s Loading required package: Matrix 422s Loading required package: survival 422s 422s Attaching package: 'survey' 422s 422s The following object is masked from 'package:graphics': 422s 422s dotchart 422s 422s > 422s > ab<-expand.grid(a=factor(1:4),b=factor(1:3)) 422s > 422s > kaltonsample<-ab[rep(1:12,c(20,50,100,30,40,140,50,100,40,310,50,70)),] 422s > 422s > kaltonpop<-ab[rep(1:12,c(80,60,170,55,40,150,60,165,55,340,200,125)),] 422s > 422s > jointpop<-colSums(model.matrix(~a*b,kaltonpop)) 422s > marginalpop<-colSums(model.matrix(~a+b,kaltonpop)) 422s > gregpop<-colSums(model.matrix(~as.numeric(a)+as.numeric(b),kaltonpop)) 422s > 422s > dkalton<-svydesign(id=~1,data=kaltonsample) 422s Warning message: 422s In svydesign.default(id = ~1, data = kaltonsample) : 422s No weights or probabilities supplied, assuming equal probability 422s > 422s > dps<-postStratify(dkalton,~a+b,xtabs(~a+b,kaltonpop)) 422s > 422s > drake<-rake(dkalton, list(~a,~b),list(xtabs(~a,kaltonpop),xtabs(~b,kaltonpop)),control=list(epsilon=0.0001)) 422s > 422s > dcalps<-calibrate(dkalton, ~a*b, jointpop) 422s > dcalrake<-calibrate(dkalton,~a+b, marginalpop, calfun="raking") 422s > dlinear<-calibrate(dkalton, ~a+b, marginalpop) 422s > 422s > dtrunclinear<-calibrate(dkalton, ~a+b, marginalpop,bounds=c(0.5,2.2)) 422s > 422s > dlogit<-calibrate(dkalton, ~a+b, marginalpop,bounds=c(0.5,2.2),calfun="logit") 422s > 422s > dgreg<-calibrate(dkalton,~as.numeric(a)+as.numeric(b), gregpop) 422s > 422s > 422s > #table A 422s > round(svytable(~a+b,dps)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 4.00 1.00 1.38 422s 2 1.20 1.07 1.10 422s 3 1.70 1.20 4.00 422s 4 1.83 1.65 1.79 422s > round(svytable(~a+b,dcalps)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 4.00 1.00 1.37 422s 2 1.20 1.07 1.10 422s 3 1.70 1.20 4.00 422s 4 1.83 1.65 1.79 422s > 422s > #table B 422s > round(svytable(~a+b,drake)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 1.81 1.45 2.02 422s 2 1.08 0.87 1.21 422s 3 2.20 1.76 2.45 422s 4 1.83 1.47 2.04 422s > round(svytable(~a+b,dcalrake)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 1.81 1.45 2.02 422s 2 1.08 0.87 1.21 422s 3 2.20 1.76 2.45 422s 4 1.83 1.47 2.04 422s > 422s > #table C 422s > round(svytable(~a+b,dlinear)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 1.82 1.50 1.97 422s 2 1.09 0.78 1.24 422s 3 2.19 1.88 2.34 422s 4 1.83 1.52 1.98 422s > 422s > #table D 422s > round(svytable(~a+b,dgreg)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 1.21 1.17 1.14 422s 2 1.43 1.40 1.36 422s 3 1.66 1.62 1.59 422s 4 1.88 1.85 1.81 422s > 422s > #table G 422s > round(svytable(~a+b,dlogit)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 1.87 1.46 1.98 422s 2 1.08 0.74 1.27 422s 3 2.17 2.09 2.18 422s 4 1.89 1.49 1.99 422s > 422s > #table G 422s > round(svytable(~a+b,dtrunclinear)/xtabs(~a+b,kaltonsample),2) 422s b 422s a 1 2 3 422s 1 1.81 1.48 1.99 422s 2 1.08 0.75 1.26 422s 3 2.20 2.00 2.20 422s 4 1.83 1.50 2.00 422s > 422s BEGIN TEST logranktest.R 422s 422s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 422s Copyright (C) 2024 The R Foundation for Statistical Computing 422s Platform: arm-unknown-linux-gnueabihf (32-bit) 422s 422s R is free software and comes with ABSOLUTELY NO WARRANTY. 422s You are welcome to redistribute it under certain conditions. 422s Type 'license()' or 'licence()' for distribution details. 422s 422s R is a collaborative project with many contributors. 422s Type 'contributors()' for more information and 422s 'citation()' on how to cite R or R packages in publications. 422s 422s Type 'demo()' for some demos, 'help()' for on-line help, or 422s 'help.start()' for an HTML browser interface to help. 422s Type 'q()' to quit R. 422s 422s > ## StackOverflow 63333282 422s > 422s > library(survey) 422s Loading required package: grid 422s Loading required package: Matrix 423s Loading required package: survival 424s 424s Attaching package: 'survey' 424s 424s The following object is masked from 'package:graphics': 424s 424s dotchart 424s 424s > D = data.frame(unique_id = 1:135, 424s + 424s + weights = rep(1,135), 424s + 424s + event_time = c(0.53512437, 1.35655869, 2.00414189, 2.37276648, 3.20343526, 0.96618494, 2.57894309, 0.94575080, 1.25347833, 1.44416450, 5.04038200, 7.80587169 , 424s + 424s + 6.53631154, 6.31914568, 7.00146597, 9.67616088, 7.94212358, 9.70693890, 10.67575835, 10.06764688, 12.29175616, 13.60092871, 13.12508566, 14.66417522, 424s + 424s + 15.35250691, 0.93368707, 0.19087611, 3.15533767, 4.40821633, 17.54334957, 17.95177642, 15.50903946, 16.48376185, 20.87956697, 21.24571398, 22.34297263, 424s + 424s + 23.36042629, 21.01760215, 23.84785038, 26.06105822, 4.16866350, 1.96922485, 0.66199008, 6.76987830, 1.55617685, 0.19095871, 3.13291784, 5.43159409, 424s + 424s + 9.55805671, 4.31437322, 0.78259860, 5.26415156, 3.45095686, 1.69128712, 8.41942426, 3.33748695, 6.08516173, 2.72897404, 0.22789783, 0.86348009, 424s + 424s + 2.35707587, 2.97477615, 12.33273800, 0.58532123, 0.14586238, 10.67948547, 4.07655972, 3.94405136, 0.37226898, 1.42558725, 1.47680658, 4.22506540, 424s + 424s + 1.56703478, 8.37484756, 12.54015087, 1.80994787, 3.66453633, 1.02834532, 1.99065652, 1.23577436, 16.21981618, 14.35039798, 4.15321606, 2.79740679, 424s + 424s + 0.35538726, 7.46823358, 1.66329088, 7.46525382, 2.62734831, 3.19057957, 0.33317193, 0.09122886, 9.14616245, 2.48542578, 2.37569263, 5.48499630, 424s + 424s + 2.22749399, 2.64816296, 0.97101545, 1.42468625, 1.27668904, 0.03692447, 1.98783210, 5.47692729, 3.88316178, 0.32921277, 1.77225345, 9.33268901, 424s + 424s + 2.44517775, 1.49813702, 2.56059172, 3.43194832, 1.22955630, 3.56263947, 9.07060099, 3.58312362, 2.22755370, 4.24783776, 3.46364804, 1.61671354, 424s + 424s + 11.10973565, 7.18764270, 1.80400046, 6.39833474, 6.72825192, 6.46063344, 5.76855531, 5.27157807, 4.66154734, 3.50019718, 2.27156678, 3.28531594, 424s + 424s + 2.35699896, 2.94956000, 8.85381736), 424s + 424s + event_flag = c(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 1, 0, 0, 0, 1, 424s + 424s + 1, 0, 0, 0, 0, 1, 0, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 0, 1, 0, 0, 1, 0, 0, 1, 0, 1, 1, 1, 424s + 424s + 1, 1, 1, 0, 1, 0, 1, 0, 1, 1, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0), 424s + 424s + group = c(rep("group1", 40), rep("group2", 95))) 424s > 424s > 424s > 424s > svykm_formula = as.formula("Surv(event_time, event_flag) ~ group") 424s > 424s > svy_design = svydesign( ids = ~unique_id , weights = ~weights, data = D ) 424s > 424s > a<-svylogrank(formula = svykm_formula, design = svy_design) 424s > 424s > ii<-with(D, order(event_time, event_flag)) 424s > 424s > svy_design2 = svydesign( ids = ~unique_id , weights = ~weights, data = D[ii,] ) 424s > 424s > b<-svylogrank(formula = svykm_formula, design = svy_design2) 424s > d<-svylogrank(formula = svykm_formula, design = svy_design, method = "large") 424s > 424s > f<- svylogrank(formula = svykm_formula, design = svy_design, method = "score") 424s > 424s > 424s > stopifnot(all.equal(a[[2]],b[[2]])) 424s > 424s > stopifnot(all.equal(a[[2]],d[[2]])) 424s > 424s > stopifnot(all.equal(a[[2]],f[-1])) 424s > 424s > 424s BEGIN TEST lonely.psu.R 424s 424s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 424s Copyright (C) 2024 The R Foundation for Statistical Computing 424s Platform: arm-unknown-linux-gnueabihf (32-bit) 424s 424s R is free software and comes with ABSOLUTELY NO WARRANTY. 424s You are welcome to redistribute it under certain conditions. 424s Type 'license()' or 'licence()' for distribution details. 424s 424s R is a collaborative project with many contributors. 424s Type 'contributors()' for more information and 424s 'citation()' on how to cite R or R packages in publications. 424s 424s Type 'demo()' for some demos, 'help()' for on-line help, or 424s 'help.start()' for an HTML browser interface to help. 424s Type 'q()' to quit R. 424s 424s > 424s > ## lonely PSUs by design 424s > library(survey) 424s Loading required package: grid 424s Loading required package: Matrix 425s Loading required package: survival 425s 425s Attaching package: 'survey' 425s 425s The following object is masked from 'package:graphics': 425s 425s dotchart 425s 425s > data(api) 425s > ## not certainty PSUs by fpc 425s > ds<-svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = apiclus1) 425s > summary(ds) 425s Stratified Independent Sampling design (with replacement) 425s svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = apiclus1) 425s Probabilities: 425s Min. Error in onestrat(x[index, , drop = FALSE], clusters[index], nPSU[index][1], : 425s Stratum (413) has only one PSU at stage 1 425s Error in jknweights(design$strata[, 1], design$cluster[, 1], fpc = fpc, : 425s Stratum413has only one PSU 425s 1st Qu. Median Mean 3rd Qu. Max. 425s 0.02954 0.02954 0.02954 0.02954 0.02954 0.02954 425s Stratum Sizes: 425s 61 135 178 197 255 406 413 437 448 510 568 637 716 778 815 425s obs 13 34 4 13 16 2 1 4 12 21 9 11 37 2 4 425s design.PSU 13 34 4 13 16 2 1 4 12 21 9 11 37 2 4 425s actual.PSU 13 34 4 13 16 2 1 4 12 21 9 11 37 2 4 425s Data variables: 425s [1] "cds" "stype" "name" "sname" "snum" "dname" 425s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 425s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 425s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 425s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 425s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 425s [37] "api.stu" "fpc" "pw" 425s > 425s > options(survey.lonely.psu="fail") 425s > try(svymean(~api00,ds)) 425s > try(svymean(~api00, as.svrepdesign(ds))) 425s > options(survey.lonely.psu="remove") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.8058 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.8058 425s > options(survey.lonely.psu="certainty") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.8058 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.8058 425s > options(survey.lonely.psu="adjust") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.8281 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.8267 425s > options(survey.lonely.psu="average") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 6.0096 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.8217 425s > 425s > ## fpc specified 425s > fpc<-ifelse(apiclus1$dnum==413, 1,1000) 425s > ds<-svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = apiclus1,fpc=fpc) 425s > summary(ds) 425s Stratified Independent Sampling design 425s svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = apiclus1, 425s fpc = fpc) 425s Probabilities: 425s Min. 1st Qu. Median Mean 3rd Qu. Max. 425s 0.02954 0.02954 0.02954 0.02954 0.02954 0.02954 425s Stratum Sizes: 425s 61 135 178 197 255 406 413 437 448 510 568 637 716 778 815 425s obs 13 34 4 13 16 2 1 4 12 21 9 11 37 2 4 425s design.PSU 13 34 4 13 16 2 1 4 12 21 9 11 37 2 4 425s actual.PSU 13 34 4 13 16 2 1 4 12 21 9 11 37 2 4 425s Population stratum sizes (PSUs): 425s 135 178 197 255 406 413 437 448 510 568 61 637 716 778 815 425s 1000 1000 1000 1000 1000 1 1000 1000 1000 1000 1000 1000 1000 1000 1000 425s Data variables: 425s [1] "cds" "stype" "name" "sname" "snum" "dname" 425s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 425s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 425s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 425s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 425s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 425s [37] "api.stu" "fpc" "pw" 425s > 425s > options(survey.lonely.psu="fail") 425s > try(svymean(~api00,ds)) 425s mean SE 425s api00 644.17 5.7344 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.7344 425s > options(survey.lonely.psu="remove") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.7344 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.7344 425s > options(survey.lonely.psu="certainty") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.7344 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.7344 425s > options(survey.lonely.psu="adjust") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.7344 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.7344 425s > options(survey.lonely.psu="average") 425s > svymean(~api00,ds) 425s mean SE 425s api00 644.17 5.7344 425s > svymean(~api00, as.svrepdesign(ds)) 425s mean SE 425s api00 644.17 5.7501 425s > 425s > rs<-as.svrepdesign(ds) 425s > svytotal(~api00,rs) 425s total SE 425s api00 3989986 35616 425s > SE(svytotal(~api00,subset(rs, dnum==413)))==0 425s [1] TRUE 425s > 425s > ## lonely PSUs after subsetting 425s > ds<-svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = subset(apiclus1,dnum !=413)) 425s > ds1<-ds[-31,] 425s > summary(ds1) 425s Stratified Independent Sampling design (with replacement) 425s svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = subset(apiclus1, 425s dnum != 413)) 425s Probabilities: 425s Min. 1st Qu. Median Mean 3rd Qu. Max. 425s 0.02954 0.02954 0.02954 0.02954 0.02954 0.02954 425s Stratum Sizes: 425s 61 135 178 197 255 406 437 448 510 568 637 716 778 815 425s obs 13 34 4 13 16 1 4 12 21 9 11 37 2 4 425s design.PSU 13 34 4 13 16 2 4 12 21 9 11 37 2 4 425s actual.PSU 13 34 4 13 16 1 4 12 21 9 11 37 2 4 425s Data variables: 425s [1] "cds" "stype" "name" "sname" "snum" "dname" 425s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 425s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 425s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 425s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 425s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 425s [37] "api.stu" "fpc" "pw" 425s > 425s > options(survey.lonely.psu="fail") 425s > svymean(~api00,ds1) 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="remove") 425s > svymean(~api00,ds1) 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="certainty") 425s > svymean(~api00,ds1) 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="adjust") 425s > svymean(~api00,ds1) 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="average") 425s > svymean(~api00,ds1) 425s mean SE 425s api00 645.14 5.8909 425s > 425s > ## with adjustment 425s > options(survey.adjust.domain.lonely=TRUE) 425s > ds<-svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = subset(apiclus1,dnum !=413)) 425s > ds1<-ds[-31,] 425s > summary(ds1) 425s Stratified Independent Sampling design (with replacement) 425s svydesign(id = ~1, weights = ~pw, strata = ~dnum, data = subset(apiclus1, 425s dnum != 413)) 425s Probabilities: 425s Min. 1st Qu. Median Mean 3rd Qu. Max. 425s 0.02954 0.02954 0.02954 0.02954 0.02954 0.02954 425s Stratum Sizes: 425s 61 135 178 197 255 406 437 448 510 568 637 716 778 815 425s obs 13 34 4 13 16 1 4 12 21 9 11 37 2 4 425s design.PSU 13 34 4 13 16 2 4 12 21 9 11 37 2 4 425s actual.PSU 13 34 4 13 16 1 4 12 21 9 11 37 2 4 425s Data variables: 425s [1] "cds" "stype" "name" "sname" "snum" "dname" 425s [7] "dnum" "cname" "cnum" "flag" "pcttest" "api00" 425s [13] "api99" "target" "growth" "sch.wide" "comp.imp" "both" 425s [19] "awards" "meals" "ell" "yr.rnd" "mobility" "acs.k3" 425s [25] "acs.46" "acs.core" "pct.resp" "not.hsg" "hsg" "some.col" 425s [31] "col.grad" "grad.sch" "avg.ed" "full" "emer" "enroll" 425s [37] "api.stu" "fpc" "pw" 425s > 425s > options(survey.lonely.psu="fail") 425s > try(svymean(~api00,ds1)) 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="remove") 425s > svymean(~api00,ds1) 425s Warning message: 425s In onestrat(x[index, , drop = FALSE], clusters[index], nPSU[index][1], : 425s Stratum (406) has only one PSU at stage 1 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="certainty") 425s > svymean(~api00,ds1) 425s Warning message: 425s In onestrat(x[index, , drop = FALSE], clusters[index], nPSU[index][1], : 425s Stratum (406) has only one PSU at stage 1 425s mean SE 425s api00 645.14 5.8909 425s > options(survey.lonely.psu="adjust") 425s > svymean(~api00,ds1) 425s Warning message: 425s In onestrat(x[index, , drop = FALSE], clusters[index], nPSU[index][1], : 425s Stratum (406) has only one PSU at stage 1 425s Warning message: 425s In onestrat(x[index, , drop = FALSE], clusters[index], nPSU[index][1], : 425s Stratum (406) has only one PSU at stage 1 425s mean SE 425s api00 645.14 5.9119 425s > options(survey.lonely.psu="average") 425s > svymean(~api00,ds1) 425s mean SE 425s api00 645.14 6.0914 425s > 425s Warning message: 425s In onestrat(x[index, , drop = FALSE], clusters[index], nPSU[index][1], : 425s Stratum (406) has only one PSU at stage 1 425s BEGIN TEST mtcars-var.R 425s 425s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 425s Copyright (C) 2024 The R Foundation for Statistical Computing 425s Platform: arm-unknown-linux-gnueabihf (32-bit) 425s 425s R is free software and comes with ABSOLUTELY NO WARRANTY. 425s You are welcome to redistribute it under certain conditions. 425s Type 'license()' or 'licence()' for distribution details. 425s 425s R is a collaborative project with many contributors. 425s Type 'contributors()' for more information and 425s 'citation()' on how to cite R or R packages in publications. 425s 425s Type 'demo()' for some demos, 'help()' for on-line help, or 425s 'help.start()' for an HTML browser interface to help. 425s Type 'q()' to quit R. 425s 426s > library(survey) 426s Loading required package: grid 426s Loading required package: Matrix 427s Loading required package: survival 427s 427s Attaching package: 'survey' 427s 427s The following object is masked from 'package:graphics': 427s 427s dotchart 427s 427s > 427s > # don't throw an error on domains of size 1, just return NA 427s > input <- mtcars 427s > input$carb <- factor(input$carb) 427s > design <- svydesign(ids = ~0, weights = NULL, data = input) 427s > svyby( 427s + ~mpg, 427s + ~carb, 427s + design, 427s + svyvar 427s + ) 427s carb mpg se 427s 1 1 36.01619 11.2823286 427s 2 2 29.94444 9.0030898 427s 3 3 1.11000 0.4604066 427s 4 4 15.29656 4.3174617 427s 6 6 NA NA 427s 8 8 NA NA 427s > 427s > 427s > ## same n with na.rm=TRUE as subset(, !is.na) 427s > input$mpg[1]<-NA 427s > design <- svydesign(ids = ~0, weights = NULL, data = input) 427s > stopifnot(all.equal(svyvar(~mpg, design, na.rm=TRUE), 427s + svyvar(~mpg, subset(design, !is.na(mpg))))) 427s > 427s BEGIN TEST multistage.R 427s 427s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 427s Copyright (C) 2024 The R Foundation for Statistical Computing 427s Platform: arm-unknown-linux-gnueabihf (32-bit) 427s 427s R is free software and comes with ABSOLUTELY NO WARRANTY. 427s You are welcome to redistribute it under certain conditions. 427s Type 'license()' or 'licence()' for distribution details. 427s 427s R is a collaborative project with many contributors. 427s Type 'contributors()' for more information and 427s 'citation()' on how to cite R or R packages in publications. 427s 427s Type 'demo()' for some demos, 'help()' for on-line help, or 427s 'help.start()' for an HTML browser interface to help. 427s Type 'q()' to quit R. 427s 427s > ## 427s > ## Check that multistage samples still work 427s > ## 427s > library(survey) 427s Loading required package: grid 427s Loading required package: Matrix 428s Loading required package: survival 428s 428s Attaching package: 'survey' 428s 428s The following object is masked from 'package:graphics': 428s 428s dotchart 428s 428s > example(mu284) 428s 428s mu284> data(mu284) 428s 428s mu284> (dmu284<-svydesign(id=~id1+id2,fpc=~n1+n2, data=mu284)) 428s 2 - level Cluster Sampling design 428s With (5, 15) clusters. 428s (dmu284<-svydesign(id=~id1+id2,fpc=~n1+n2, data=mu284)) 428s 428s mu284> (ytotal<-svytotal(~y1, dmu284)) 428s total SE 428s y1 15080 2274.3 428s 428s mu284> vcov(ytotal) 428s y1 428s y1 5172234 428s > 428s > 428s BEGIN TEST na_action.R 428s 428s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 428s Copyright (C) 2024 The R Foundation for Statistical Computing 428s Platform: arm-unknown-linux-gnueabihf (32-bit) 428s 428s R is free software and comes with ABSOLUTELY NO WARRANTY. 428s You are welcome to redistribute it under certain conditions. 428s Type 'license()' or 'licence()' for distribution details. 428s 428s R is a collaborative project with many contributors. 428s Type 'contributors()' for more information and 428s 'citation()' on how to cite R or R packages in publications. 428s 428s Type 'demo()' for some demos, 'help()' for on-line help, or 428s 'help.start()' for an HTML browser interface to help. 428s Type 'q()' to quit R. 428s 428s > ## from Terry Therneau 428s > library(survey) 428s Loading required package: grid 428s Loading required package: Matrix 429s Loading required package: survival 430s 430s Attaching package: 'survey' 430s 430s > load("naa.rda") 430s The following object is masked from 'package:graphics': 430s 430s dotchart 430s 430s > 430s > fit1e <- svyglm( pseudo ~ age34 + ccr5 + factor(times), design= adata.s,na.action=na.exclude) 430s > fit1o <- svyglm( pseudo ~ age34 + ccr5 + factor(times), design= adata.s) 430s > all.equal(coef(fit1e),coef(fit1o)) 430s [1] TRUE 430s > all.equal(vcov(fit1e),vcov(fit1o)) 430s [1] TRUE 430s > 430s BEGIN TEST newquantile.R 430s 430s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 430s Copyright (C) 2024 The R Foundation for Statistical Computing 430s Platform: arm-unknown-linux-gnueabihf (32-bit) 430s 430s R is free software and comes with ABSOLUTELY NO WARRANTY. 430s You are welcome to redistribute it under certain conditions. 430s Type 'license()' or 'licence()' for distribution details. 430s 430s R is a collaborative project with many contributors. 430s Type 'contributors()' for more information and 430s 'citation()' on how to cite R or R packages in publications. 430s 430s Type 'demo()' for some demos, 'help()' for on-line help, or 430s 'help.start()' for an HTML browser interface to help. 430s Type 'q()' to quit R. 430s 430s > ## quantiles with equal weights 430s > 430s > library(survey) 430s Loading required package: grid 430s Loading required package: Matrix 431s Loading required package: survival 432s 432s Attaching package: 'survey' 432s 432s > data(api) 432s The following object is masked from 'package:graphics': 432s 432s dotchart 432s 432s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 432s > 432s > 432s > for(i in 1:9){ 432s + print(i) 432s + all.equal( 432s + as.vector(coef(svyquantile(~ell, dclus1, c(0.2,0.5,0.9), qrule=paste0("hf",i)))), 432s + as.vector(quantile(apiclus1$ell, c(0.2,0.5,0.9), type=i)) 432s + ) 432s + 432s + } 432s [1] 1 432s [1] 2 432s [1] 3 432s [1] 4 432s [1] 5 432s [1] 6 432s [1] 7 432s [1] 8 432s [1] 9 432s > 432s BEGIN TEST nwts-cch.R 432s 432s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 432s Copyright (C) 2024 The R Foundation for Statistical Computing 432s Platform: arm-unknown-linux-gnueabihf (32-bit) 432s 432s R is free software and comes with ABSOLUTELY NO WARRANTY. 432s You are welcome to redistribute it under certain conditions. 432s Type 'license()' or 'licence()' for distribution details. 432s 432s R is a collaborative project with many contributors. 432s Type 'contributors()' for more information and 432s 'citation()' on how to cite R or R packages in publications. 432s 432s Type 'demo()' for some demos, 'help()' for on-line help, or 432s 'help.start()' for an HTML browser interface to help. 432s Type 'q()' to quit R. 432s 432s > library(survey) 432s Loading required package: grid 432s Loading required package: Matrix 433s Loading required package: survival 433s 433s Attaching package: 'survey' 433s 433s The following object is masked from 'package:graphics': 433s 433s dotchart 433s 433s > library(survival) 433s > data(nwtco) 433s > 433s > ntwco<-subset(nwtco, !is.na(edrel)) 433s > 433s > load("nwtco-subcohort.rda") 433s > nwtco$subcohort<-subcohort 433s > 433s > d_BorganII <- twophase(id=list(~seqno,~seqno), 433s + strata=list(NULL,~interaction(instit,rel)), 433s + data=nwtco, subset=~I(rel |subcohort)) 434s > 434s > ##Coefficient results same as Splus with code from 434s > ## http://faculty.washington.edu/norm/software.html 434s > ## SE slightly larger due to using sandwich variance. 434s > 434s > svycoxph(Surv(edrel, rel)~factor(stage)+factor(histol)+I(age/12), design=d_BorganII) 434s Call: 434s svycoxph(formula = Surv(edrel, rel) ~ factor(stage) + factor(histol) + 434s I(age/12), design = d_BorganII) 434s 434s coef exp(coef) se(coef) robust se z p 434s factor(stage)2 0.46286 1.58861 0.23762 0.18087 2.559 0.01049 434s factor(stage)3 0.58309 1.79156 0.23965 0.17848 3.267 0.00109 434s factor(stage)4 1.05967 2.88541 0.26182 0.20524 5.163 2.43e-07 434s factor(histol)2 1.59744 4.94035 0.17688 0.13342 11.973 < 2e-16 434s I(age/12) 0.02994 1.03039 0.02942 0.03337 0.897 0.36972 434s 434s Likelihood ratio test= on 5 df, p= 434s n= 1062, number of events= 571 434s > 434s > ## 434s > ## This gives higher standard errors. calibrate() does not recompute the 434s > ## finite population correction if a calibration variable happens to predict 434s > ## sampling perfectly. It probably should. 434s > ## 434s > d_BorganIIps<-calibrate(twophase(id=list(~seqno,~seqno), 434s + strata=list(NULL,~rel), 434s + data=nwtco, subset=~I(rel |subcohort)), 434s + phase=2, formula=~interaction(instit,rel), 434s + epsilon=1e-10) 434s > 434s > svycoxph(Surv(edrel, rel)~factor(stage)+factor(histol)+I(age/12), design=d_BorganIIps) 434s Call: 434s svycoxph(formula = Surv(edrel, rel) ~ factor(stage) + factor(histol) + 434s I(age/12), design = d_BorganIIps) 434s 434s coef exp(coef) se(coef) robust se z p 434s factor(stage)2 0.46286 1.58861 0.23762 0.18076 2.561 0.01045 434s factor(stage)3 0.58309 1.79156 0.23965 0.17838 3.269 0.00108 434s factor(stage)4 1.05967 2.88541 0.26182 0.20513 5.166 2.39e-07 434s factor(histol)2 1.59744 4.94035 0.17688 0.13044 12.246 < 2e-16 434s I(age/12) 0.02994 1.03039 0.02942 0.03331 0.899 0.36876 434s 434s Likelihood ratio test= on 5 df, p= 434s n= 1062, number of events= 571 434s > 434s BEGIN TEST nwts.R 434s 434s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 434s Copyright (C) 2024 The R Foundation for Statistical Computing 434s Platform: arm-unknown-linux-gnueabihf (32-bit) 434s 434s R is free software and comes with ABSOLUTELY NO WARRANTY. 434s You are welcome to redistribute it under certain conditions. 434s Type 'license()' or 'licence()' for distribution details. 434s 434s R is a collaborative project with many contributors. 434s Type 'contributors()' for more information and 434s 'citation()' on how to cite R or R packages in publications. 434s 434s Type 'demo()' for some demos, 'help()' for on-line help, or 434s 'help.start()' for an HTML browser interface to help. 434s Type 'q()' to quit R. 434s 434s > 434s > ## examples from Breslow & Chatterjee: Applied Statistics 1999 No. 4, p458 434s > ## data from Norman Breslow's web page. 434s > library(survey) 434s Loading required package: grid 434s Loading required package: Matrix 436s Loading required package: survival 436s 436s Attaching package: 'survey' 436s 436s The following object is masked from 'package:graphics': 436s 436s dotchart 436s 436s > load("nwts.rda") 436s > nwtsnb<-nwts 436s > nwtsnb$case<-nwts$case-nwtsb$case 436s > nwtsnb$control<-nwts$control-nwtsb$control 436s > 436s > a<-rbind(nwtsb,nwtsnb) 436s > a$in.ccs<-rep(c(TRUE,FALSE),each=16) 436s > 436s > b<-rbind(a,a) 436s > b$rel<-rep(c(1,0),each=32) 436s > b$n<-ifelse(b$rel,b$case,b$control) 436s > 436s > index<-rep(1:64,b$n) 436s > 436s > nwt.exp<-b[index,c(1:3,6,7)] 436s > nwt.exp$id<-1:4088 436s > 436s > dccs2<-twophase(id=list(~id,~id),subset=~in.ccs, 436s + strata=list(NULL,~interaction(instit,rel)),data=nwt.exp) 437s > 437s > dccs8<-twophase(id=list(~id,~id),subset=~in.ccs, 437s + strata=list(NULL,~interaction(instit,stage,rel)),data=nwt.exp) 437s > 437s > gccs8<-calibrate(dccs2,phase=2,formula=~interaction(instit,stage,rel)) 437s > 437s > summary(svyglm(rel~factor(stage)*factor(histol),family=quasibinomial,design=dccs2)) 437s 437s Call: 437s svyglm(formula = rel ~ factor(stage) * factor(histol), design = dccs2, 437s family = quasibinomial) 437s 437s Survey design: 437s twophase2(id = id, strata = strata, probs = probs, fpc = fpc, 437s subset = subset, data = data) 437s 437s Coefficients: 437s Estimate Std. Error t value Pr(>|t|) 437s (Intercept) -2.5701 0.1288 -19.955 < 2e-16 *** 437s factor(stage)2 0.5482 0.1979 2.769 0.005708 ** 437s factor(stage)3 0.4791 0.2032 2.359 0.018515 * 437s factor(stage)4 1.0037 0.2592 3.872 0.000114 *** 437s factor(histol)2 1.3505 0.3107 4.346 1.51e-05 *** 437s factor(stage)2:factor(histol)2 0.1152 0.4410 0.261 0.793876 437s factor(stage)3:factor(histol)2 0.5066 0.4241 1.194 0.232548 437s factor(stage)4:factor(histol)2 0.9785 0.6214 1.575 0.115615 437s --- 437s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 437s 437s (Dispersion parameter for quasibinomial family taken to be 1.000876) 437s 437s Number of Fisher Scoring iterations: 4 437s 437s > summary(svyglm(rel~factor(stage)*factor(histol),family=quasibinomial,design=dccs8)) 437s 437s Call: 437s svyglm(formula = rel ~ factor(stage) * factor(histol), design = dccs8, 437s family = quasibinomial) 437s 437s Survey design: 437s twophase2(id = id, strata = strata, probs = probs, fpc = fpc, 437s subset = subset, data = data) 437s 437s Coefficients: 437s Estimate Std. Error t value Pr(>|t|) 437s (Intercept) -2.71604 0.10827 -25.085 < 2e-16 *** 437s factor(stage)2 0.78141 0.14726 5.306 1.35e-07 *** 437s factor(stage)3 0.80093 0.15250 5.252 1.80e-07 *** 437s factor(stage)4 1.07293 0.17817 6.022 2.33e-09 *** 437s factor(histol)2 1.45836 0.31780 4.589 4.96e-06 *** 437s factor(stage)2:factor(histol)2 -0.04743 0.43495 -0.109 0.913 437s factor(stage)3:factor(histol)2 0.28064 0.41298 0.680 0.497 437s factor(stage)4:factor(histol)2 0.90983 0.63774 1.427 0.154 437s --- 437s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 437s 437s (Dispersion parameter for quasibinomial family taken to be 1.000876) 437s 437s Number of Fisher Scoring iterations: 4 437s 437s > summary(svyglm(rel~factor(stage)*factor(histol),family=quasibinomial,design=gccs8)) 437s 437s Call: 437s svyglm(formula = rel ~ factor(stage) * factor(histol), design = gccs8, 437s family = quasibinomial) 437s 437s Survey design: 437s calibrate(dccs2, phase = 2, formula = ~interaction(instit, stage, 437s rel)) 437s 437s Coefficients: 437s Estimate Std. Error t value Pr(>|t|) 437s (Intercept) -2.71604 0.10878 -24.968 < 2e-16 *** 437s factor(stage)2 0.78141 0.14729 5.305 1.35e-07 *** 437s factor(stage)3 0.80093 0.15212 5.265 1.68e-07 *** 437s factor(stage)4 1.07293 0.17905 5.993 2.77e-09 *** 437s factor(histol)2 1.45836 0.31757 4.592 4.88e-06 *** 437s factor(stage)2:factor(histol)2 -0.04743 0.43432 -0.109 0.913 437s factor(stage)3:factor(histol)2 0.28064 0.41231 0.681 0.496 437s factor(stage)4:factor(histol)2 0.90983 0.63187 1.440 0.150 437s --- 437s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 437s 437s (Dispersion parameter for quasibinomial family taken to be 1.000876) 437s 437s Number of Fisher Scoring iterations: 4 437s 437s > 437s > ## check subsets of calibrated designs. 437s > summary(svyglm(rel~factor(stage), 437s + family=quasibinomial,design=subset(dccs8,histol==1))) 437s 437s Call: 437s svyglm(formula = rel ~ factor(stage), design = subset(dccs8, 437s histol == 1), family = quasibinomial) 437s 437s Survey design: 437s subset(dccs8, histol == 1) 437s 437s Coefficients: 437s Estimate Std. Error t value Pr(>|t|) 437s (Intercept) -2.7160 0.1083 -25.085 < 2e-16 *** 437s factor(stage)2 0.7814 0.1473 5.306 1.48e-07 *** 437s factor(stage)3 0.8009 0.1525 5.252 1.97e-07 *** 437s factor(stage)4 1.0729 0.1782 6.022 2.73e-09 *** 437s --- 437s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 437s 437s (Dispersion parameter for quasibinomial family taken to be 1.001333) 437s 437s Number of Fisher Scoring iterations: 4 437s 437s > summary(svyglm(rel~factor(stage), 437s + family=quasibinomial,design=subset(gccs8,histol==1))) 437s Warning messages: 437s 1: In `[.twophase2`(x, r, ) : 1 strata have only one PSU in this subset. 437s 2: In summary.glm(g) : 437s observations with zero weight not used for calculating dispersion 437s 3: In summary.glm(glm.object) : 437s observations with zero weight not used for calculating dispersion 437s 4: In `[.twophase2`(design, nas == 0, ) : 437s 1 strata have only one PSU in this subset. 437s 5: In `[.twophase2`(design, nas == 0, ) : 437s 1 strata have only one PSU in this subset. 437s 437s Call: 437s svyglm(formula = rel ~ factor(stage), design = subset(gccs8, 437s histol == 1), family = quasibinomial) 437s 437s Survey design: 437s subset(gccs8, histol == 1) 437s 437s Coefficients: 437s Estimate Std. Error t value Pr(>|t|) 437s (Intercept) -2.7160 0.1082 -25.105 < 2e-16 *** 437s factor(stage)2 0.7814 0.1457 5.363 1.10e-07 *** 437s factor(stage)3 0.8009 0.1504 5.324 1.34e-07 *** 437s factor(stage)4 1.0729 0.1759 6.101 1.70e-09 *** 437s --- 437s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 437s 437s (Dispersion parameter for quasibinomial family taken to be 1.001333) 437s 437s Number of Fisher Scoring iterations: 4 437s 437s > 437s > 437s Warning messages: 437s 1: In summary.glm(g) : 437s observations with zero weight not used for calculating dispersion 437s 2: In summary.glm(glm.object) : 437s observations with zero weight not used for calculating dispersion 438s BEGIN TEST poisson.R 438s 438s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 438s Copyright (C) 2024 The R Foundation for Statistical Computing 438s Platform: arm-unknown-linux-gnueabihf (32-bit) 438s 438s R is free software and comes with ABSOLUTELY NO WARRANTY. 438s You are welcome to redistribute it under certain conditions. 438s Type 'license()' or 'licence()' for distribution details. 438s 438s R is a collaborative project with many contributors. 438s Type 'contributors()' for more information and 438s 'citation()' on how to cite R or R packages in publications. 438s 438s Type 'demo()' for some demos, 'help()' for on-line help, or 438s 'help.start()' for an HTML browser interface to help. 438s Type 'q()' to quit R. 438s 438s Loading required package: grid 438s > ## check poisson sampling 438s > library(survey) 438s Loading required package: Matrix 439s Loading required package: survival 439s 439s Attaching package: 'survey' 439s 439s The following object is masked from 'package:graphics': 439s 439s dotchart 439s 439s > data(api) 439s > set.seed(2021-7-15) 439s > apipop$prob<-apipop$api00/1000 439s > insample<-rbinom(nrow(apipop),1,apipop$prob) 439s > apipois<-apipop[insample,] 439s > des<-svydesign(id=~1, prob=~prob, pps=poisson_sampling(apipois$prob), data=apipois) 439s > 439s > stopifnot(isTRUE(all.equal( 439s + as.vector(SE(svytotal(~api00,design=des))), 439s + as.vector(sqrt(sum( (apipois$api00*weights(des))^2*(1-apipois$prob)))) 439s + ))) 439s > 439s > 439s BEGIN TEST pps.R 439s 439s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 439s Copyright (C) 2024 The R Foundation for Statistical Computing 439s Platform: arm-unknown-linux-gnueabihf (32-bit) 439s 439s R is free software and comes with ABSOLUTELY NO WARRANTY. 439s You are welcome to redistribute it under certain conditions. 439s Type 'license()' or 'licence()' for distribution details. 439s 439s R is a collaborative project with many contributors. 439s Type 'contributors()' for more information and 439s 'citation()' on how to cite R or R packages in publications. 439s 439s Type 'demo()' for some demos, 'help()' for on-line help, or 439s 'help.start()' for an HTML browser interface to help. 439s Type 'q()' to quit R. 439s 439s > library(survey) 439s Loading required package: grid 439s Loading required package: Matrix 440s Loading required package: survival 441s 441s Attaching package: 'survey' 441s 441s The following object is masked from 'package:graphics': 441s 441s dotchart 441s 441s > data(election) 441s > 441s > dpps<- svydesign(id=~1, weights=~wt, fpc=~p, data=election_pps, pps="brewer") 441s > dppswr <-svydesign(id=~1, weights=~wt, data=election_pps) 441s > svytotal(~Bush+Kerry+Nader, dpps) 441s total SE 441s Bush 64518472 2447629 441s Kerry 51202102 2450787 441s Nader 478530 102420 441s > svytotal(~Bush+Kerry+Nader, dppswr) 441s total SE 441s Bush 64518472 2671455 441s Kerry 51202102 2679433 441s Nader 478530 105303 441s > 441s > ##subsets 441s > svytotal(~Bush+Kerry+Nader, subset(dpps, Nader>0)) 441s total SE 441s Bush 34944285 5399833 441s Kerry 25581714 4028434 441s Nader 478530 102420 441s > 441s > ##multistage: should agree with STRS analysis 441s > data(api) 441s > dclus2<-svydesign(id = ~dnum + snum, fpc = ~fpc1 + fpc2, data = apiclus2) 441s > dclus2pps<-svydesign(id = ~dnum + snum, fpc = ~I(40/fpc1) + I(pmin(1,5/fpc2)), data = apiclus2) 441s > 441s > all.equal(svytotal(~sch.wide,dclus2), svytotal(~sch.wide,dclus2pps)) 441s [1] TRUE 441s > all.equal(svymean(~sch.wide,dclus2), svymean(~sch.wide,dclus2pps)) 441s [1] TRUE 441s > all.equal(svytotal(~enroll,dclus2), svytotal(~enroll,dclus2pps)) 441s [1] TRUE 441s > 441s > ## the new without-replacement methods 441s > data(election) 441s > dpps_br<- svydesign(id=~1, fpc=~p, data=election_pps, pps="brewer") 441s > dpps_ov<- svydesign(id=~1, fpc=~p, data=election_pps, pps="overton") 441s > dpps_hr<- svydesign(id=~1, fpc=~p, data=election_pps, pps=HR(sum(election$p^2)/40)) 441s > dpps_hr1<- svydesign(id=~1, fpc=~p, data=election_pps, pps=HR()) 441s > dpps_ht<- svydesign(id=~1, fpc=~p, data=election_pps, pps=ppsmat(election_jointprob)) 441s > ## Yates-Grundy type 441s > dpps_yg<- svydesign(id=~1, fpc=~p, data=election_pps, pps=ppsmat(election_jointprob),variance="YG") 441s > dpps_hryg<- svydesign(id=~1, fpc=~p, data=election_pps, pps=HR(sum(election$p^2)/40),variance="YG") 441s > 441s > ## The with-replacement approximation 441s > svytotal(~Bush+Kerry+Nader, dpps_ht) 441s total SE 441s Bush 64518472 2604404 441s Kerry 51202102 2523712 441s Nader 478530 102326 441s > svytotal(~Bush+Kerry+Nader, dpps_yg) 441s total SE 441s Bush 64518472 2406526 441s Kerry 51202102 2408091 441s Nader 478530 101664 441s > svytotal(~Bush+Kerry+Nader, dpps_hr) 441s total SE 441s Bush 64518472 2624662 441s Kerry 51202102 2525222 441s Nader 478530 102793 441s > svytotal(~Bush+Kerry+Nader, dpps_hryg) 441s total SE 441s Bush 64518472 2436738 441s Kerry 51202102 2439845 441s Nader 478530 102016 441s > svytotal(~Bush+Kerry+Nader, dpps_hr1) 441s total SE 441s Bush 64518472 2472753 441s Kerry 51202102 2426842 441s Nader 478530 102595 441s > svytotal(~Bush+Kerry+Nader, dpps_br) 441s total SE 441s Bush 64518472 2447629 441s Kerry 51202102 2450787 441s Nader 478530 102420 441s > svytotal(~Bush+Kerry+Nader, dpps_ov) 441s total SE 441s Bush 64518472 2939608 441s Kerry 51202102 1964632 441s Nader 478530 104373 441s > 441s > ## subsets 441s > svytotal(~Bush+Kerry+Nader, subset(dpps_ht, Nader>0)) 441s total SE 441s Bush 34944285 5406348 441s Kerry 25581714 4047741 441s Nader 478530 102326 441s > svytotal(~Bush+Kerry+Nader, subset(dpps_hryg, Nader>0)) 441s total SE 441s Bush 34944285 5377659 441s Kerry 25581714 4010908 441s Nader 478530 102016 441s > 441s > ## counts 441s > svyby(~Bush+Kerry+Nader,~I(Nader>0), unwtd.count,design=dpps_ht) 441s I(Nader > 0) counts se 441s FALSE FALSE 19 0 441s TRUE TRUE 21 0 441s > 441s BEGIN TEST quantile.R 441s 441s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 441s Copyright (C) 2024 The R Foundation for Statistical Computing 441s Platform: arm-unknown-linux-gnueabihf (32-bit) 441s 441s R is free software and comes with ABSOLUTELY NO WARRANTY. 441s You are welcome to redistribute it under certain conditions. 441s Type 'license()' or 'licence()' for distribution details. 441s 441s R is a collaborative project with many contributors. 441s Type 'contributors()' for more information and 441s 'citation()' on how to cite R or R packages in publications. 441s 441s Type 'demo()' for some demos, 'help()' for on-line help, or 441s 'help.start()' for an HTML browser interface to help. 441s Type 'q()' to quit R. 441s 441s > library(survey) 441s Loading required package: grid 441s Loading required package: Matrix 443s Loading required package: survival 443s > set.seed(42) 443s > 443s > df<-data.frame(x=exp(rnorm(1000))) 443s 443s Attaching package: 'survey' 443s 443s The following object is masked from 'package:graphics': 443s 443s dotchart 443s 443s > df$y<-round(df$x,1) 443s > ddf<-svydesign(id=~1,data=df) 443s Warning message: 443s In svydesign.default(id = ~1, data = df) : 443s No weights or probabilities supplied, assuming equal probability 443s > rdf<-as.svrepdesign(ddf) 444s > 444s > SE(oldsvyquantile(~x,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE)) 444s 0.01 0.1 0.5 0.9 0.99 444s 0.01543792 0.01264453 0.03386225 0.16131948 2.10605799 444s > 444s > SE(oldsvyquantile(~x,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE)) 444s x 444s q0.01 0.01554946 444s q0.1 0.01425828 444s q0.5 0.03428012 444s q0.9 0.16457488 444s q0.99 1.88672412 444s > 444s > SE(oldsvyquantile(~x,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,df=Inf)) 444s 0.01 0.1 0.5 0.9 0.99 444s 0.01545209 0.01265608 0.03388011 0.16145776 2.10061576 444s > 444s > SE(oldsvyquantile(~x,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,df=Inf)) 444s x 444s q0.01 0.01556240 444s q0.1 0.01420086 444s q0.5 0.03430175 444s q0.9 0.16461019 444s q0.99 1.88818131 444s > 444s > 444s > oldsvyquantile(~y,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,ties="rounded",interval.type="betaWald") 444s $quantiles 444s 0.01 0.1 0.5 0.9 0.99 444s y 0.02352941 0.2230769 0.9340909 3.55 9.4 444s 444s $CIs 444s , , y 444s 444s 0.01 0.1 0.5 0.9 0.99 444s (lower 0.01594200 0.2020115 0.8578143 3.207543 7.568142 444s upper) 0.03287947 0.2467045 1.0059815 3.862241 14.978632 444s 444s 444s > 444s > oldsvyquantile(~y,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE) 444s Statistic: 444s y 444s q0.01 0.1 444s q0.1 0.3 444s q0.5 1.0 444s q0.9 3.6 444s q0.99 9.4 444s SE: 444s y 444s q0.01 0.02547977 444s q0.1 0.02547977 444s q0.5 0.02547977 444s q0.9 0.15287859 444s q0.99 1.88302540 444s > 444s > oldsvyquantile(~y,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,ties="rounded",interval.type="betaWald",df=Inf) 444s $quantiles 444s 0.01 0.1 0.5 0.9 0.99 444s y 0.02352941 0.2230769 0.9340909 3.55 9.4 444s 444s $CIs 444s , , y 444s 444s 0.01 0.1 0.5 0.9 0.99 444s (lower 0.01594200 0.2020115 0.8578143 3.207543 7.568142 444s upper) 0.03287947 0.2467045 1.0059815 3.862241 14.978632 444s 444s 444s > 444s > oldsvyquantile(~y,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE, df=Inf) 444s Statistic: 444s y 444s q0.01 0.1 444s q0.1 0.3 444s q0.5 1.0 444s q0.9 3.6 444s q0.99 9.4 444s SE: 444s y 444s q0.01 0.02551067 444s q0.1 0.02551067 444s q0.5 0.02551067 444s q0.9 0.15306404 444s q0.99 1.88450896 444s > 444s > 444s > 444s > df<-data.frame(x=exp(rnorm(20))) 444s > df$y<-round(df$x,1) 444s > ddf<-svydesign(id=~1,data=df) 444s Warning message: 444s In svydesign.default(id = ~1, data = df) : 444s No weights or probabilities supplied, assuming equal probability 444s > rdf<-as.svrepdesign(ddf) 444s > SE(oldsvyquantile(~x,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE)) 444s 0.01 0.1 0.5 0.9 0.99 444s 0.03576771 0.07329496 0.30149917 2.03440784 1.88468597 444s > 444s > SE(oldsvyquantile(~x,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE)) 444s x 444s q0.01 0.00000000 444s q0.1 0.04598541 444s q0.5 0.25943731 444s q0.9 2.12343073 444s q0.99 1.91998924 444s > 444s > SE(oldsvyquantile(~x,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,df=Inf)) 444s 0.01 0.1 0.5 0.9 0.99 444s 0.03637398 0.07470310 0.29938115 2.16381289 2.00708994 444s > 444s > SE(oldsvyquantile(~x,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,df=Inf)) 444s x 444s q0.01 0.00000000 444s q0.1 0.04732818 444s q0.5 0.24957966 444s q0.9 2.25211815 444s q0.99 2.04043154 444s > 444s > 444s > oldsvyquantile(~y,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,ties="rounded",interval.type="betaWald") 444s $quantiles 444s 0.01 0.1 0.5 0.9 0.99 444s y 0.1 0.15 0.75 2.4 8.68 444s 444s $CIs 444s , , y 444s 444s 0.01 0.1 0.5 0.9 0.99 444s (lower 0.100000 0.1000000 0.3674054 1.352279 0.5674674 444s upper) 1.132533 0.3464541 1.6303784 8.473337 10.2000000 444s 444s 444s > 444s > oldsvyquantile(~y,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE) 444s Statistic: 444s y 444s q0.01 0.10 444s q0.1 0.20 444s q0.5 0.80 444s q0.9 2.40 444s q0.99 8.68 444s SE: 444s y 444s q0.01 0.00000000 444s q0.1 0.02611112 444s q0.5 0.26542051 444s q0.9 2.10908603 444s q0.99 1.91777710 444s > 444s > oldsvyquantile(~y,ddf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE,ties="rounded",interval.type="betaWald",df=Inf) 444s $quantiles 444s 0.01 0.1 0.5 0.9 0.99 444s y 0.1 0.15 0.75 2.4 8.68 444s 444s $CIs 444s , , y 444s 444s 0.01 0.1 0.5 0.9 0.99 444s (lower 0.100000 0.1000000 0.3674054 1.352279 0.5674674 444s upper) 1.132533 0.3464541 1.6303784 8.473337 10.2000000 444s 444s 444s > 444s > oldsvyquantile(~y,rdf, c(0.01,0.1,0.5,0.9,0.99),ci=TRUE, df=Inf) 444s Statistic: 444s y 444s q0.01 0.10 444s q0.1 0.20 444s q0.5 0.80 444s q0.9 2.40 444s q0.99 8.68 444s SE: 444s y 444s q0.01 0.00000000 444s q0.1 0.02551067 444s q0.5 0.25244616 444s q0.9 2.23558589 444s q0.99 2.03881114 444s > 444s BEGIN TEST quantiles-chile.R 444s 444s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 444s Copyright (C) 2024 The R Foundation for Statistical Computing 444s Platform: arm-unknown-linux-gnueabihf (32-bit) 444s 444s R is free software and comes with ABSOLUTELY NO WARRANTY. 444s You are welcome to redistribute it under certain conditions. 444s Type 'license()' or 'licence()' for distribution details. 444s 444s R is a collaborative project with many contributors. 444s Type 'contributors()' for more information and 444s 'citation()' on how to cite R or R packages in publications. 444s 444s Type 'demo()' for some demos, 'help()' for on-line help, or 444s 'help.start()' for an HTML browser interface to help. 444s Type 'q()' to quit R. 444s 444s > library(survey) 444s Loading required package: grid 444s Loading required package: Matrix 445s Loading required package: survival 445s 445s Attaching package: 'survey' 445s 445s > datos <- readRDS("datos_ejemplo.rds") 445s > 445s > design <- svydesign(id = ~id_directorio, strata = ~estrato, weights = ~f_pers, check.strata = TRUE, data = datos) 445s The following object is masked from 'package:graphics': 445s 445s dotchart 445s 445s > set.seed(234262762) 445s > repdesign <- as.svrepdesign(design, type = "subbootstrap", replicates=20) 445s > options(survey.lonely.psu="remove") 445s > 445s > values<-datos$ing_t_p[datos$CL_GRUPO_OCU_08=="ISCO08_6"] 445s > 445s > suppressWarnings({ 445s + f0<-coef(svyquantile(~ing_t_p, subset(design,CL_GRUPO_OCU_08=="ISCO08_6"),quantiles=c(0.5), qrule="math")) 445s + f0.5<-coef(svyquantile(~ing_t_p, subset(design,CL_GRUPO_OCU_08=="ISCO08_6"),quantiles=c(0.5), qrule="school")) 445s + }) 445s > all.equal(c(values[1],mean(values)), as.vector(c(f0,f0.5))) 445s [1] TRUE 445s > 445s > suppressWarnings({ 445s + f0<-coef(svyquantile(~ing_t_p, subset(repdesign,CL_GRUPO_OCU_08=="ISCO08_6"),quantiles=c(0.5), qrule="math")) 445s + f0.5<-coef(svyquantile(~ing_t_p, subset(repdesign,CL_GRUPO_OCU_08=="ISCO08_6"),quantiles=c(0.5), qrule="school")) 445s + }) 446s > all.equal(c(values[1],mean(values)), as.vector(c(f0,f0.5))) 446s [1] TRUE 446s > 446s BEGIN TEST rakecheck.R 446s 446s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 446s Copyright (C) 2024 The R Foundation for Statistical Computing 446s Platform: arm-unknown-linux-gnueabihf (32-bit) 446s 446s R is free software and comes with ABSOLUTELY NO WARRANTY. 446s You are welcome to redistribute it under certain conditions. 446s Type 'license()' or 'licence()' for distribution details. 446s 446s R is a collaborative project with many contributors. 446s Type 'contributors()' for more information and 446s 'citation()' on how to cite R or R packages in publications. 446s 446s Type 'demo()' for some demos, 'help()' for on-line help, or 446s 'help.start()' for an HTML browser interface to help. 446s Type 'q()' to quit R. 446s 446s > library(survey) 446s Loading required package: grid 446s Loading required package: Matrix 447s Loading required package: survival 447s 447s Attaching package: 'survey' 447s 447s The following object is masked from 'package:graphics': 447s 447s dotchart 447s 447s > 447s > data(api) 447s > dclus1 <- svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 447s > rclus1 <- as.svrepdesign(dclus1) 447s > 447s > ## population marginal totals for each stratum 447s > pop.types <- data.frame(stype=c("E","H","M"), Freq=c(4421,755,1018)) 447s > pop.schwide <- data.frame(sch.wide=c("No","Yes"), Freq=c(1072,5122)) 447s > 447s > rclus1r <- rake(rclus1, list(~stype,~sch.wide), list(pop.types, pop.schwide)) 447s > 447s > svymean(~api00, rclus1r) 447s mean SE 447s api00 641.23 26.873 447s > svytotal(~enroll, rclus1r) 447s total SE 447s enroll 3647300 463511 447s > 447s > ff<-~stype+sch.wide 447s > poptotals<-colSums(model.matrix(ff,model.frame(ff,apipop))) 447s > rclus1g<-calibrate(rclus1, ~stype+sch.wide, poptotals,calfun="raking") 447s > 447s > svymean(~api00,rclus1g) 447s mean SE 447s api00 641.23 26.874 447s > svytotal(~enroll,rclus1g) 447s total SE 447s enroll 3647280 463582 447s > 447s > summary(weights(rclus1g)/weights(rclus1r)) 447s V1 V2 V3 V4 V5 V6 447s Min. :1 Min. :1 Min. :1 Min. :1 Min. :1 Min. :1 447s 1st Qu.:1 1st Qu.:1 1st Qu.:1 1st Qu.:1 1st Qu.:1 1st Qu.:1 447s Median :1 Median :1 Median :1 Median :1 Median :1 Median :1 447s Mean :1 Mean :1 Mean :1 Mean :1 Mean :1 Mean :1 447s 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 447s Max. :1 Max. :1 Max. :1 Max. :1 Max. :1 Max. :1 447s NA's :11 NA's :4 NA's :2 NA's :13 NA's :2 NA's :4 447s V7 V8 V9 V10 V11 447s Min. :1 Min. :1 Min. :1 Min. :1 Min. :1 447s 1st Qu.:1 1st Qu.:1 1st Qu.:1 1st Qu.:1 1st Qu.:1 447s Median :1 Median :1 Median :1 Median :1 Median :1 447s Mean :1 Mean :1 Mean :1 Mean :1 Mean :1 447s 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 447s Max. :1 Max. :1 Max. :1 Max. :1 Max. :1 447s NA's :4 NA's :16 NA's :9 NA's :34 NA's :21 447s V12 V13 V14 V15 447s Min. :0.9997 Min. :1 Min. :1 Min. :1 447s 1st Qu.:1.0001 1st Qu.:1 1st Qu.:1 1st Qu.:1 447s Median :1.0001 Median :1 Median :1 Median :1 447s Mean :1.0000 Mean :1 Mean :1 Mean :1 447s 3rd Qu.:1.0001 3rd Qu.:1 3rd Qu.:1 3rd Qu.:1 447s Max. :1.0002 Max. :1 Max. :1 Max. :1 447s NA's :37 NA's :13 NA's :1 NA's :12 447s > 447s > 447s > ## Do it for a design without replicate weights 447s > dclus1r<-rake(dclus1, list(~stype,~sch.wide), list(pop.types, pop.schwide)) 447s > 447s > svymean(~api00, dclus1r) 447s mean SE 447s api00 641.23 23.704 447s > svytotal(~enroll, dclus1r) 447s total SE 447s enroll 3647300 400603 447s > 447s > dclus1g<-calibrate(dclus1, ~stype+sch.wide, poptotals,calfun="raking") 447s > 447s > svymean(~api00,dclus1g) 447s mean SE 447s api00 641.23 23.704 447s > svytotal(~enroll,dclus1g) 447s total SE 447s enroll 3647280 400603 447s > 447s > summary(weights(dclus1g)/weights(dclus1r)) 447s Min. 1st Qu. Median Mean 3rd Qu. Max. 447s 1 1 1 1 1 1 447s > 447s > 447s > 447s > ## Example of raking with partial joint distributions 447s > pop.table <- xtabs(~stype+sch.wide,apipop) 447s > pop.imp<-data.frame(comp.imp=c("No","Yes"),Freq=c(1712,4482)) 447s > dclus1r2<-rake(dclus1, list(~stype+sch.wide, ~comp.imp), 447s + list(pop.table, pop.imp)) 447s > svymean(~api00, dclus1r2) 447s mean SE 447s api00 642.62 22.732 447s > 447s > ff1 <-~stype*sch.wide+comp.imp 447s > 447s > poptotals1<-colSums(model.matrix(ff1,model.frame(ff1,apipop))) 447s > dclus1g2<-calibrate(dclus1, ~stype*sch.wide+comp.imp, poptotals1, calfun="raking") 447s > 447s > svymean(~api00, dclus1g2) 447s mean SE 447s api00 642.61 22.731 447s > 447s > summary(weights(dclus1r2)/weights(dclus1g2)) 447s Min. 1st Qu. Median Mean 3rd Qu. Max. 447s 0.999 1.000 1.000 1.000 1.000 1.002 447s > 447s BEGIN TEST raowuboot.R 447s 447s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 447s Copyright (C) 2024 The R Foundation for Statistical Computing 447s Platform: arm-unknown-linux-gnueabihf (32-bit) 447s 447s R is free software and comes with ABSOLUTELY NO WARRANTY. 447s You are welcome to redistribute it under certain conditions. 447s Type 'license()' or 'licence()' for distribution details. 447s 447s R is a collaborative project with many contributors. 447s Type 'contributors()' for more information and 447s 'citation()' on how to cite R or R packages in publications. 447s 447s Type 'demo()' for some demos, 'help()' for on-line help, or 447s 'help.start()' for an HTML browser interface to help. 447s Type 'q()' to quit R. 447s 447s > ## regression test for bug reported by Richard Valliant 447s > library(survey) 447s Loading required package: grid 447s Loading required package: Matrix 448s Loading required package: survival 449s 449s Attaching package: 'survey' 449s 449s The following object is masked from 'package:graphics': 449s 449s dotchart 449s 449s > s<-subbootweights(c(1,1),1:2, 50) 449s > stopifnot(all(s$repweights$weights %in% c(0,2))) 449s > 449s BEGIN TEST regTermTest-missing.R 449s 449s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 449s Copyright (C) 2024 The R Foundation for Statistical Computing 449s Platform: arm-unknown-linux-gnueabihf (32-bit) 449s 449s R is free software and comes with ABSOLUTELY NO WARRANTY. 449s You are welcome to redistribute it under certain conditions. 449s Type 'license()' or 'licence()' for distribution details. 449s 449s R is a collaborative project with many contributors. 449s Type 'contributors()' for more information and 449s 'citation()' on how to cite R or R packages in publications. 449s 449s Type 'demo()' for some demos, 'help()' for on-line help, or 449s 'help.start()' for an HTML browser interface to help. 449s Type 'q()' to quit R. 449s 449s > library(survey) 449s Loading required package: grid 449s Loading required package: Matrix 450s Loading required package: survival 450s > data(nhanes) 450s 450s Attaching package: 'survey' 450s 450s The following object is masked from 'package:graphics': 450s 450s dotchart 450s 450s > design <- svydesign(id=~SDMVPSU, strata=~SDMVSTRA, weights=~WTMEC2YR, nest=TRUE,data=nhanes) 450s > 450s > a<-svyglm(formula = I(race == 1) ~ HI_CHOL + agecat + RIAGENDR, design = subset(design,!is.na(HI_CHOL)), family=quasibinomial) 450s > b<-svyglm(formula = I(race == 1) ~ HI_CHOL + agecat + RIAGENDR, design =design , family=quasibinomial) 450s > 450s > ta<-regTermTest(a, ~HI_CHOL) 450s > tb<-regTermTest(b, ~HI_CHOL) 450s > 450s > stopifnot(isTRUE(all.equal(ta$chisq, tb$chisq))) 450s > stopifnot(isTRUE(all.equal(ta$lambda, tb$lambda))) 450s > 450s BEGIN TEST regpredict.R 450s 450s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 450s Copyright (C) 2024 The R Foundation for Statistical Computing 450s Platform: arm-unknown-linux-gnueabihf (32-bit) 450s 450s R is free software and comes with ABSOLUTELY NO WARRANTY. 450s You are welcome to redistribute it under certain conditions. 450s Type 'license()' or 'licence()' for distribution details. 450s 450s R is a collaborative project with many contributors. 450s Type 'contributors()' for more information and 450s 'citation()' on how to cite R or R packages in publications. 450s 450s Type 'demo()' for some demos, 'help()' for on-line help, or 450s 'help.start()' for an HTML browser interface to help. 450s Type 'q()' to quit R. 450s 450s > library(survey) 450s Loading required package: grid 450s Loading required package: Matrix 451s Loading required package: survival 452s 452s Attaching package: 'survey' 452s 452s The following object is masked from 'package:graphics': 452s 452s dotchart 452s 452s > data(api) 452s > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 452s > 452s > 452s > ## regression estimator of total, three ways 452s > pop<-data.frame(enroll=sum(apipop$enroll, na.rm=TRUE)) 452s > npop <- sum(!is.na(apipop$enroll)) 452s > 452s > api.reg <- svyglm(api.stu~enroll, design=dstrat) 452s > a <- predict(api.reg, newdata=pop, total=npop) 452s > b <- svytotal(~api.stu, calibrate(dstrat, ~enroll, pop=c(npop, pop$enroll))) 452s > 452s > all.equal(as.vector(coef(a)),as.vector(coef(b))) 452s [1] TRUE 452s > all.equal(as.vector(SE(a)), as.vector(SE(b))) 452s [1] TRUE 452s > if(!is.null(getOption("DEBUG"))){ ## uses 6194x6194 matrix 452s + d <- predict(api.reg, newdata=na.omit(apipop[,"enroll",drop=FALSE])) 452s + all.equal(as.vector(coef(a)), as.vector(sum(coef(d)))) 452s + all.equal(as.vector(SE(a)), as.vector(sqrt(sum(vcov(d))))) 452s + } 452s > 452s > ## classical ratio estimator, four ways. 452s > api.reg2 <- svyglm(api.stu~enroll-1, design=dstrat, 452s + family=quasi(link="identity", var="mu")) 452s > 452s > a <- predict(api.reg2, newdata=pop, total=npop) 452s > b <- svytotal(~api.stu, 452s + calibrate(dstrat, ~enroll-1, pop= pop$enroll, variance=2)) 452s > e <- predict(svyratio(~api.stu, ~enroll, dstrat),total=pop$enroll) 452s > 452s > all.equal(as.vector(coef(a)),as.vector(coef(b))) 452s [1] TRUE 452s > all.equal(as.vector(SE(a)), as.vector(SE(b))) 452s [1] TRUE 452s > all.equal(as.vector(coef(a)),as.vector(e$total)) 452s [1] TRUE 452s > all.equal(as.vector(SE(a)), as.vector(e$se)) 452s [1] TRUE 452s > if(!is.null(getOption("DEBUG"))){## uses 6194x6194 matrix 452s + d <- predict(api.reg2, newdata=na.omit(apipop[,"enroll",drop=FALSE])) 452s + all.equal(as.vector(coef(a)), as.vector(sum(coef(d)))) 452s + all.equal(as.vector(SE(a)), as.vector(sqrt(sum(vcov(d))))) 452s + } 452s > 452s BEGIN TEST rss_scores.R 452s 452s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 452s Copyright (C) 2024 The R Foundation for Statistical Computing 452s Platform: arm-unknown-linux-gnueabihf (32-bit) 452s 452s R is free software and comes with ABSOLUTELY NO WARRANTY. 452s You are welcome to redistribute it under certain conditions. 452s Type 'license()' or 'licence()' for distribution details. 452s 452s R is a collaborative project with many contributors. 452s Type 'contributors()' for more information and 452s 'citation()' on how to cite R or R packages in publications. 452s 452s Type 'demo()' for some demos, 'help()' for on-line help, or 452s 'help.start()' for an HTML browser interface to help. 452s Type 'q()' to quit R. 452s 452s > ## Example from Rao, Scott, and Skinner 1998 Statistica Sinica 452s > library(survey) 452s Loading required package: grid 452s Loading required package: Matrix 453s Loading required package: survival 453s 453s Attaching package: 'survey' 453s 453s The following object is masked from 'package:graphics': 453s 453s dotchart 453s 453s > data(myco) 453s > dmyco<-svydesign(id=~1, strata=~interaction(Age,leprosy),weights=~wt,data=myco) 453s > m_full<-svyglm(leprosy~I((Age+7.5)^-2)+Scar, family=quasibinomial, design=dmyco) 453s > m_null<-svyglm(leprosy~I((Age+7.5)^-2), family=quasibinomial, design=dmyco) 453s > 453s > stopifnot(isTRUE(all.equal(coef(m_null), c(`(Intercept)`=-4.6, `I((Age + 7.5)^-2)`=-427),tol=1e-2))) 453s > 453s > s<-svyscoretest(m_full, ~Scar) 453s > stopifnot(abs(s[1]-10.73)<0.05) 453s > 453s > t<-svyscoretest(m_full,~Scar,method="individual") 453s > stopifnot(abs(coef(t)- -32.61)<0.1) 453s > stopifnot(abs(vcov(t)-99.1)<0.1) 453s > 453s > 453s BEGIN TEST scoping.R 453s 453s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 453s Copyright (C) 2024 The R Foundation for Statistical Computing 453s Platform: arm-unknown-linux-gnueabihf (32-bit) 453s 453s R is free software and comes with ABSOLUTELY NO WARRANTY. 453s You are welcome to redistribute it under certain conditions. 453s Type 'license()' or 'licence()' for distribution details. 453s 453s R is a collaborative project with many contributors. 453s Type 'contributors()' for more information and 453s 'citation()' on how to cite R or R packages in publications. 453s 453s Type 'demo()' for some demos, 'help()' for on-line help, or 453s 'help.start()' for an HTML browser interface to help. 453s Type 'q()' to quit R. 453s 453s > 453s > ## regression test for testing regression 453s > 453s > library(survey) 453s Loading required package: grid 453s Loading required package: Matrix 454s Loading required package: survival 455s 455s Attaching package: 'survey' 455s 455s The following object is masked from 'package:graphics': 455s 455s dotchart 455s 455s > data(api) 455s > 455s > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 455s > 455s > 455s > f<-function(){ 455s + form<-acs.46~stype 455s + svyglm(formula=form, design = dstrat) 455s + } 455s > 455s > g<-function(form){ 455s + svyglm(formula=form, design = dstrat) 455s + } 455s > f() 455s Stratified Independent Sampling design 455s svydesign(id = ~1, strata = ~stype, weights = ~pw, data = apistrat, 455s fpc = ~fpc) 455s 455s Call: svyglm(formula = form, design = dstrat) 455s 455s Coefficients: 455s (Intercept) stypeH stypeM 455s 28.7449 0.7551 0.4022 455s 455s Degrees of Freedom: 133 Total (i.e. Null); 129 Residual 455s (66 observations deleted due to missingness) 455s Null Deviance: 1838 455s Residual Deviance: 1835 AIC: 719.8 455s > g(acs.46~stype) 455s Stratified Independent Sampling design 455s svydesign(id = ~1, strata = ~stype, weights = ~pw, data = apistrat, 455s fpc = ~fpc) 455s 455s Call: svyglm(formula = form, design = dstrat) 455s 455s Coefficients: 455s (Intercept) stypeH stypeM 455s 28.7449 0.7551 0.4022 455s 455s Degrees of Freedom: 133 Total (i.e. Null); 129 Residual 455s (66 observations deleted due to missingness) 455s Null Deviance: 1838 455s Residual Deviance: 1835 AIC: 719.8 455s > 455s > f<-function(){ 455s + form<-Surv(acs.46)~stype 455s + svycoxph(formula=form, design = dstrat) 455s + } 455s > 455s > g<-function(form){ 455s + svycoxph(formula=form, design = dstrat) 455s + } 455s > 455s > f() 455s Call: 455s svycoxph(formula = form, design = dstrat) 455s 455s coef exp(coef) se(coef) robust se z p 455s stypeH -0.6766 0.5083 1.0208 0.6652 -1.017 0.309 455s stypeM -0.2509 0.7781 0.2308 0.2089 -1.201 0.230 455s 455s Likelihood ratio test= on 2 df, p= 455s n= 134, number of events= 134 455s (66 observations deleted due to missingness) 455s > g(Surv(acs.46)~stype) 455s Call: 455s svycoxph(formula = form, design = dstrat) 455s 455s coef exp(coef) se(coef) robust se z p 455s stypeH -0.6766 0.5083 1.0208 0.6652 -1.017 0.309 455s stypeM -0.2509 0.7781 0.2308 0.2089 -1.201 0.230 455s 455s Likelihood ratio test= on 2 df, p= 455s n= 134, number of events= 134 455s (66 observations deleted due to missingness) 455s > 455s > ## check coxph for a single predictor 455s > svycoxph(Surv(acs.46)~api00,design=dstrat) 455s Call: 455s svycoxph(formula = Surv(acs.46) ~ api00, design = dstrat) 455s 455s coef exp(coef) se(coef) robust se z p 455s api00 6.060e-06 1.000e+00 6.244e-04 7.492e-04 0.008 0.994 455s 455s Likelihood ratio test= on 1 df, p= 455s n= 134, number of events= 134 455s (66 observations deleted due to missingness) 455s > 455s BEGIN TEST survcurve.R 455s 455s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 455s Copyright (C) 2024 The R Foundation for Statistical Computing 455s Platform: arm-unknown-linux-gnueabihf (32-bit) 455s 455s R is free software and comes with ABSOLUTELY NO WARRANTY. 455s You are welcome to redistribute it under certain conditions. 455s Type 'license()' or 'licence()' for distribution details. 455s 455s R is a collaborative project with many contributors. 455s Type 'contributors()' for more information and 455s 'citation()' on how to cite R or R packages in publications. 455s 455s Type 'demo()' for some demos, 'help()' for on-line help, or 455s 'help.start()' for an HTML browser interface to help. 455s Type 'q()' to quit R. 455s 455s > library(survey) 455s Loading required package: grid 455s Loading required package: Matrix 456s Loading required package: survival 456s 456s Attaching package: 'survey' 456s 456s The following object is masked from 'package:graphics': 456s 456s dotchart 456s 456s > library(survival) 456s > 456s > pbc2<-rbind(pbc,pbc) 456s > pbc2$id<-rep(1:418,2) 456s > 456s > dpbc1<-svydesign(id=~1, data=pbc) 456s Warning message: 456s In svydesign.default(id = ~1, data = pbc) : 456s No weights or probabilities supplied, assuming equal probability 456s > dpbc2<-svydesign(id=~id, data=pbc2) 456s > 456s > s1<-svykm(Surv(time,status>0)~1, subset(dpbc1, bili>6), se=TRUE) 456s Warning message: 456s In svydesign.default(id = ~id, data = pbc2) : 456s No weights or probabilities supplied, assuming equal probability 456s > s2<-svykm(Surv(time,status>0)~1, subset(dpbc2, bili>6), se=TRUE) 456s > 456s > (c1<-confint(s1,(1:5)*365)) 456s 0.025 0.975 456s 365 0.6446215 0.8594153 456s 730 0.5410938 0.7766848 456s 1095 0.2683127 0.5103356 456s 1460 0.1444731 0.3722001 456s 1825 0.1009672 0.3204713 456s > (c2<-confint(s2,(1:5)*365)) 456s 0.025 0.975 456s 365 0.6446215 0.8594153 456s 730 0.5410938 0.7766848 456s 1095 0.2683127 0.5103356 456s 1460 0.1444731 0.3722001 456s 1825 0.1009672 0.3204713 456s > all.equal(c1, c2) 456s [1] TRUE 456s > 456s > m1<-svycoxph(Surv(time,status>0)~log(bili), design=dpbc1) 456s > m2<-svycoxph(Surv(time,status>0)~log(bili), design=dpbc2) 456s > 456s > d<-data.frame(bili=c(5,10)) 456s > p1<-predict(m1, se=TRUE, newdata=d,type="curve") 457s > p2<-predict(m2, se=TRUE, newdata=d,type="curve") 459s > 459s > (pc1<-confint(p1[[1]],(1:5)*365)) 459s 0.025 0.975 459s 365 0.8410027 0.9266263 459s 730 0.7371114 0.8548312 459s 1095 0.5517779 0.7018583 459s 1460 0.4335073 0.5992819 459s 1825 0.3260899 0.5046241 459s > (pc2<-confint(p2[[1]],(1:5)*365)) 459s 0.025 0.975 459s 365 0.8409490 0.9267054 459s 730 0.7370152 0.8549432 459s 1095 0.5515848 0.7019513 459s 1460 0.4332252 0.5992968 459s 1825 0.3257172 0.5045795 459s > all.equal(pc1, pc2) 459s [1] "Mean relative difference: 0.0002070722" 459s > 459s > (q1<-quantile(p1[[2]])) 459s 0.75 0.5 0.25 459s 489 930 1492 459s > (q2<-quantile(p2[[2]])) 459s 0.75 0.5 0.25 459s 489 930 1492 459s > all.equal(q1,q2) 459s [1] TRUE 459s > 459s BEGIN TEST svyby-strings.R 459s 459s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 459s Copyright (C) 2024 The R Foundation for Statistical Computing 459s Platform: arm-unknown-linux-gnueabihf (32-bit) 459s 459s R is free software and comes with ABSOLUTELY NO WARRANTY. 459s You are welcome to redistribute it under certain conditions. 459s Type 'license()' or 'licence()' for distribution details. 459s 459s R is a collaborative project with many contributors. 459s Type 'contributors()' for more information and 459s 'citation()' on how to cite R or R packages in publications. 459s 459s Type 'demo()' for some demos, 'help()' for on-line help, or 459s 'help.start()' for an HTML browser interface to help. 459s Type 'q()' to quit R. 459s 459s > 459s > ## check that stringsAsFactors fixes the string levels problem 459s > data(api, package = "survey") 459s > des <- survey::svydesign(id = ~dnum, weights = ~pw, data = apiclus1, fpc = ~fpc) 460s > est0 <- 460s + survey::svyby(design=des, formula=~cname, by=~both, FUN=survey::svymean, keep.var=TRUE, stringsAsFactors=TRUE) 460s > 460s > stopifnot(isTRUE(all(dim(est0)==c(2,23)))) 460s > 460s BEGIN TEST svyby_bug.R 460s 460s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 460s Copyright (C) 2024 The R Foundation for Statistical Computing 460s Platform: arm-unknown-linux-gnueabihf (32-bit) 460s 460s R is free software and comes with ABSOLUTELY NO WARRANTY. 460s You are welcome to redistribute it under certain conditions. 460s Type 'license()' or 'licence()' for distribution details. 460s 460s R is a collaborative project with many contributors. 460s Type 'contributors()' for more information and 460s 'citation()' on how to cite R or R packages in publications. 460s 460s Type 'demo()' for some demos, 'help()' for on-line help, or 460s 'help.start()' for an HTML browser interface to help. 460s Type 'q()' to quit R. 460s 460s > library(survey) 460s Loading required package: grid 460s Loading required package: Matrix 461s Loading required package: survival 461s 461s Attaching package: 'survey' 461s 461s The following object is masked from 'package:graphics': 461s 461s dotchart 461s 461s > options(warn=2) 461s > 461s > ## Caused warnings and unhelpful results in 4.1_1 (Guilherme Jacob) 461s > data(api) 462s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 462s > svyby(~api99, ~stype, dclus1, svymean ) 462s stype api99 se 462s E E 607.7917 22.81660 462s H H 595.7143 41.76400 462s M M 608.6000 32.56064 462s > 462s > set.seed(123) 462s > apiclus1$api99[ sample.int( nrow(apiclus1) , 5 ) ] <- NA 462s > dclus1.na <-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 462s > 462s > # subsetting w/ na.rm = FALSE... 462s > svymean( ~api99 , subset( dclus1.na , stype == "E" ) , na.rm = FALSE ) 462s mean SE 462s api99 NA NaN 462s > svymean( ~api99 , subset( dclus1.na , stype == "H" ) , na.rm = FALSE ) 462s mean SE 462s api99 595.71 41.764 462s > svymean( ~api99 , subset( dclus1.na , stype == "M" ) , na.rm = FALSE ) 462s mean SE 462s api99 NA NaN 462s > 462s > # ... looks like this: 462s > svyby(~api99, ~stype, dclus1.na , svymean ) 462s stype api99 se 462s E E NA NaN 462s H H 595.7143 41.764 462s M M NA NaN 462s > 462s > # subsetting w/ na.rm = TRUE... 462s > svymean( ~api99 , subset( dclus1.na , stype == "E" ) , na.rm = TRUE ) 462s mean SE 462s api99 606.53 22.901 462s > svymean( ~api99 , subset( dclus1.na , stype == "H" ) , na.rm = TRUE ) 462s mean SE 462s api99 595.71 41.764 462s > svymean( ~api99 , subset( dclus1.na , stype == "M" ) , na.rm = TRUE ) 462s mean SE 462s api99 613.39 33.224 462s > 462s > # ... looks like this 462s > svyby(~api99, ~stype, dclus1.na , svymean , na.rm = TRUE ) 462s stype api99 se 462s E E 606.5319 22.90084 462s H H 595.7143 41.76400 462s M M 613.3913 33.22358 462s > 462s > # Without missing values, this works: 462s > svyby(~api99, ~stype, dclus1 , svymean , na.rm = TRUE , covmat = TRUE ) 462s stype api99 se 462s E E 607.7917 22.81660 462s H H 595.7143 41.76400 462s M M 608.6000 32.56064 462s > 462s > # ... but this breaks! 462s > svyby(~api99, ~stype, dclus1.na , svymean , na.rm = TRUE , covmat = TRUE ) 462s stype api99 se 462s E E 606.5319 22.90084 462s H H 595.7143 41.76400 462s M M 613.3913 33.22358 462s > 462s > # ... and i don't think this is the expected behavior 462s > svyby( ~api99, ~stype, dclus1.na , svymean , na.rm.all = TRUE , covmat = TRUE ) 462s stype api99 se 462s E E NA NaN 462s H H 595.7143 41.764 462s M M NA NaN 462s > svyby( ~api99, ~stype, dclus1.na , svymean , na.rm.all = TRUE , na.rm = TRUE , covmat = TRUE ) 462s stype api99 se 462s E E 606.5319 22.90084 462s H H 595.7143 41.76400 462s M M 613.3913 33.22358 462s > 462s > 462s > ## Now some more as tests 462s > svyby(~api99, ~stype, dclus1.na , svytotal , na.rm = TRUE , covmat = TRUE ) 462s stype api99 se 462s E E 2894629.0 792809.8 462s H H 282283.9 101492.9 462s M M 477513.4 107555.5 462s > svyby(~api99, ~stype, dclus1.na , svyratio , na.rm = TRUE , denominator=~api00, covmat = TRUE ) 462s stype api99/api00 se.api99/api00 462s E E 0.9367750 0.006365702 462s H H 0.9630485 0.010520785 462s M M 0.9682246 0.009390982 462s > 462s > ff<-function(f,d,...,na.rm=TRUE) svyglm(f,d,...) 462s > svyby(api99~1, ~stype, dclus1.na , ff , na.rm = TRUE , covmat = TRUE ) 462s stype (Intercept) se.(Intercept) 462s E E 606.5319 22.90084 462s H H 595.7143 41.76400 462s M M 613.3913 33.22358 462s > 462s BEGIN TEST svyby_se.R 462s 462s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 462s Copyright (C) 2024 The R Foundation for Statistical Computing 462s Platform: arm-unknown-linux-gnueabihf (32-bit) 462s 462s R is free software and comes with ABSOLUTELY NO WARRANTY. 462s You are welcome to redistribute it under certain conditions. 462s Type 'license()' or 'licence()' for distribution details. 462s 462s R is a collaborative project with many contributors. 462s Type 'contributors()' for more information and 462s 'citation()' on how to cite R or R packages in publications. 462s 462s Type 'demo()' for some demos, 'help()' for on-line help, or 462s 'help.start()' for an HTML browser interface to help. 462s Type 'q()' to quit R. 462s 462s > library(survey) 462s Loading required package: grid 462s Loading required package: Matrix 463s Loading required package: survival 463s 463s Attaching package: 'survey' 463s 463s > data(api) 463s The following object is masked from 'package:graphics': 463s 463s dotchart 463s 463s > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 463s > 463s > a<-svyby(~enroll,~stype,design=dstrat,svytotal,vartype=c("ci","se")) 463s > b<-svyby(~enroll,~stype,design=dstrat,svytotal,vartype=c("se","ci")) 463s > 463s > 463s > stopifnot(all.equal(SE(a),SE(b))) 463s > 463s BEGIN TEST svycontrast.R 463s 463s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 463s Copyright (C) 2024 The R Foundation for Statistical Computing 463s Platform: arm-unknown-linux-gnueabihf (32-bit) 463s 463s R is free software and comes with ABSOLUTELY NO WARRANTY. 463s You are welcome to redistribute it under certain conditions. 463s Type 'license()' or 'licence()' for distribution details. 463s 463s R is a collaborative project with many contributors. 463s Type 'contributors()' for more information and 463s 'citation()' on how to cite R or R packages in publications. 463s 463s Type 'demo()' for some demos, 'help()' for on-line help, or 463s 'help.start()' for an HTML browser interface to help. 463s Type 'q()' to quit R. 463s 463s > library(survey) 463s Loading required package: grid 463s Loading required package: Matrix 464s Loading required package: survival 465s 465s Attaching package: 'survey' 465s 465s The following object is masked from 'package:graphics': 465s 465s dotchart 465s 465s > data(api) 465s > dclus2<-svydesign(id=~dnum+snum, weights=~pw, data=apiclus2) 465s > rclus2<-as.svrepdesign(dclus2) 465s > model<-svyglm(formula = api00 ~ ell + meals + mobility, design = rclus2) 465s > svycontrast(model, c(ell=1,meals=0)) 465s contrast SE 465s contrast -2.0592 1.6177 465s > a<-svycontrast(model, c(0,1,0,0)) 465s > 465s > model2<-svyglm(formula = api00 ~ ell + meals + mobility, design = rclus2,return.replicates=TRUE) 465s > svycontrast(model2, c(ell=1,meals=0)) 465s contrast SE 465s contrast -2.0592 1.6177 465s > a2<-svycontrast(model2, c(0,1,0,0)) 465s > stopifnot(!is.null(a2$replicates)) 465s > 465s BEGIN TEST svyivreg-var.R 465s 465s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 465s Copyright (C) 2024 The R Foundation for Statistical Computing 465s Platform: arm-unknown-linux-gnueabihf (32-bit) 465s 465s R is free software and comes with ABSOLUTELY NO WARRANTY. 465s You are welcome to redistribute it under certain conditions. 465s Type 'license()' or 'licence()' for distribution details. 465s 465s R is a collaborative project with many contributors. 465s Type 'contributors()' for more information and 465s 'citation()' on how to cite R or R packages in publications. 465s 465s Type 'demo()' for some demos, 'help()' for on-line help, or 465s 'help.start()' for an HTML browser interface to help. 465s Type 'q()' to quit R. 465s 465s > 465s > library(survey) 465s Loading required package: grid 465s Loading required package: Matrix 466s Loading required package: survival 466s 466s Attaching package: 'survey' 466s 466s The following object is masked from 'package:graphics': 466s 466s dotchart 466s 466s > data(api) 466s > dstrat<-svydesign(id=~1,strata=~stype, weights=~pw, data=apistrat, fpc=~fpc) 466s > a<-summary(svyglm(api00~ell+meals+mobility, design=dstrat)) 466s > b<- summary(svyivreg(api00~ell+meals+mobility, design=dstrat)) 466s > stopifnot(isTRUE(all.equal(a$cov.scaled, b$vcov))) 466s > 466s BEGIN TEST svyivreg.R 466s 466s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 466s Copyright (C) 2024 The R Foundation for Statistical Computing 466s Platform: arm-unknown-linux-gnueabihf (32-bit) 466s 466s R is free software and comes with ABSOLUTELY NO WARRANTY. 466s You are welcome to redistribute it under certain conditions. 466s Type 'license()' or 'licence()' for distribution details. 466s 466s R is a collaborative project with many contributors. 466s Type 'contributors()' for more information and 466s 'citation()' on how to cite R or R packages in publications. 466s 466s Type 'demo()' for some demos, 'help()' for on-line help, or 466s 'help.start()' for an HTML browser interface to help. 466s Type 'q()' to quit R. 466s 467s > library(survey) 467s Loading required package: grid 467s Loading required package: Matrix 468s Loading required package: survival 468s 468s Attaching package: 'survey' 468s 468s The following object is masked from 'package:graphics': 468s 468s dotchart 468s 468s > library(AER) 468s Loading required package: car 468s Loading required package: carData 468s Loading required package: lmtest 468s Loading required package: zoo 468s 468s Attaching package: 'zoo' 468s 468s The following objects are masked from 'package:base': 468s 468s as.Date, as.Date.numeric 468s 468s Loading required package: sandwich 468s > 468s > load("cigsw.rda") 468s > 468s > des<-svydesign(id=~1, weights=~wt, data=cigsw) 468s > m<-svyivreg(log(packs) ~ log(rprice) + log(rincome) | log(rincome) + tdiff + I(tax/cpi), design=des) 468s > 468s > all.equal(as.vector(coef(m)), c(10.42009 , -1.588135, 0.6140887),tolerance=1e-6) 468s [1] TRUE 468s > all.equal(as.vector(SE(m)), c( 1.047699, .3394232, .3614382 ),tolerance=1e-6) 468s [1] TRUE 468s > 468s BEGIN TEST svyolr-rake-subset.R 468s 468s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 468s Copyright (C) 2024 The R Foundation for Statistical Computing 468s Platform: arm-unknown-linux-gnueabihf (32-bit) 468s 468s R is free software and comes with ABSOLUTELY NO WARRANTY. 468s You are welcome to redistribute it under certain conditions. 468s Type 'license()' or 'licence()' for distribution details. 468s 468s R is a collaborative project with many contributors. 468s Type 'contributors()' for more information and 468s 'citation()' on how to cite R or R packages in publications. 468s 468s Type 'demo()' for some demos, 'help()' for on-line help, or 468s 'help.start()' for an HTML browser interface to help. 468s Type 'q()' to quit R. 468s 468s > library(survey) 468s Loading required package: grid 468s Loading required package: Matrix 470s Loading required package: survival 470s > data(api) 470s 470s Attaching package: 'survey' 470s 470s The following object is masked from 'package:graphics': 470s 470s dotchart 470s 470s Loading required package: grid 470s Loading required package: Matrix 470s > dclus1 <- svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 470s > 470s > dclus1<-update(dclus1, mealcat=cut(meals,c(0,25,50,75,100))) 470s > 470s > ## population marginal totals for each stratum 470s > pop.types <- data.frame(stype=c("E","H","M"), Freq=c(4421,755,1018)) 470s > pop.schwide <- data.frame(sch.wide=c("No","Yes"), Freq=c(1072,5122)) 470s > 470s > 470s > ## rake with the population totals 470s > dclus1r<-rake(dclus1, list(~stype,~sch.wide), list(pop.types, pop.schwide)) 470s > 470s > # works 470s > m <- svyolr(mealcat~avg.ed+mobility+stype, design=dclus1) 470s > 470s > # fails in 4.1 (should work because svyolr's default na.action is na.omit) 470s > m2 <- svyolr(mealcat~avg.ed+mobility+stype, design=dclus1r) 470s > 470s > # fails in 4.1 (should work because NA values are subsetted out) 470s > m3 <- svyolr(mealcat~avg.ed+mobility+stype, design=subset( dclus1r , !is.na( avg.ed ) ) ) 470s > 470s BEGIN TEST svyolr.R 470s 470s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 470s Copyright (C) 2024 The R Foundation for Statistical Computing 470s Platform: arm-unknown-linux-gnueabihf (32-bit) 470s 470s R is free software and comes with ABSOLUTELY NO WARRANTY. 470s You are welcome to redistribute it under certain conditions. 470s Type 'license()' or 'licence()' for distribution details. 470s 470s R is a collaborative project with many contributors. 470s Type 'contributors()' for more information and 470s 'citation()' on how to cite R or R packages in publications. 470s 470s Type 'demo()' for some demos, 'help()' for on-line help, or 470s 'help.start()' for an HTML browser interface to help. 470s Type 'q()' to quit R. 470s 470s > library(survey) 471s Loading required package: survival 471s 471s Attaching package: 'survey' 471s 471s The following object is masked from 'package:graphics': 471s 471s dotchart 471s 471s > 471s > ################################################################################ 471s > # Example from svyolr: runs OK 471s > data(api) 471s > dclus1<-svydesign(id=~dnum, weights=~pw, data=apiclus1, fpc=~fpc) 471s > dclus1<-update(dclus1, mealcat=cut(meals,c(0,25,50,75,100))) 471s > 471s > m<-svyolr(mealcat~avg.ed+mobility+stype, design=dclus1) 471s > m 471s Call: 471s svyolr(mealcat ~ avg.ed + mobility + stype, design = dclus1) 471s 471s Coefficients: 471s avg.ed mobility stypeH stypeM 471s -2.6999217 0.0325042 -1.7574715 -0.6191463 471s 471s Intercepts: 471s (0,25]|(25,50] (25,50]|(50,75] (50,75]|(75,100] 471s -8.857919 -6.586464 -4.924938 471s > 471s > ## Use regTermTest for testing multiple parameters 471s > test<-regTermTest(m, ~avg.ed+stype, method="LRT") 471s > ################################################################################ 471s > 471s > ################################################################################ 471s > # If we wrap everything into a function: error b/c it looks for design variable 471s > # dclus1 in .GlobalEnv 471s > 471s > foo <- function(x){ 471s + dclus1<-svydesign(id=~dnum, weights=~pw, data=x, fpc=~fpc) 471s + dclus1<-update(dclus1, mealcat=cut(meals,c(0,25,50,75,100))) 471s + 471s + m<-svyolr(mealcat~avg.ed+mobility+stype, design=dclus1) 471s + ## Use regTermTest for testing multiple parameters 471s + regTermTest(m, ~avg.ed+stype, method="LRT") 471s + } 471s > 471s > # OK 471s > foo(apiclus1) 471s Working (Rao-Scott+F) LRT for avg.ed stype 471s in svyolr(formula = mealcat ~ avg.ed + mobility + stype, design = dclus1) 471s Working 2logLR = 0.6580304 p= 0.73257 471s (scale factors: 2.7 0.22 0.11 ); denominator df= 10 471s > 471s > # Clean-up everything but apiclus1 and foo 471s > rm(list = setdiff(ls(),c('apiclus1','foo','test'))) 471s > 471s > # Error 471s > test2<-foo(apiclus1) 471s > ################################################################################ 471s > all.equal(test,test2) 471s [1] TRUE 471s > 471s > 471s BEGIN TEST toy_example_for_postStratify.R 471s 471s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 471s Copyright (C) 2024 The R Foundation for Statistical Computing 471s Platform: arm-unknown-linux-gnueabihf (32-bit) 471s 471s R is free software and comes with ABSOLUTELY NO WARRANTY. 471s You are welcome to redistribute it under certain conditions. 471s Type 'license()' or 'licence()' for distribution details. 471s 471s R is a collaborative project with many contributors. 471s Type 'contributors()' for more information and 471s 'citation()' on how to cite R or R packages in publications. 471s 471s Type 'demo()' for some demos, 'help()' for on-line help, or 471s 'help.start()' for an HTML browser interface to help. 471s Type 'q()' to quit R. 471s 471s > library(survey) 471s Loading required package: grid 471s Loading required package: Matrix 472s Loading required package: survival 472s 472s Attaching package: 'survey' 472s 472s The following object is masked from 'package:graphics': 472s 472s dotchart 472s 472s > 472s > # Dummy data for testing nonresponse adjustments 472s > toy <- data.frame(id = 1:10, 472s + dummy = 1, 472s + class = c(rep("A", 5), rep("B", 5)), 472s + responded = c(rep(TRUE, 8), FALSE, FALSE), 472s + weight = rep(100, 10)) 472s > 472s > # With jackknife replicate weights 472s > toy_repweights <- matrix(rep(1000/9, 100), nrow = 10) 472s > diag(toy_repweights) <- rep(0, 10) 472s > 472s > # Scramble up which person is in which jackknife group 472s > toy_repweights <- toy_repweights[sample(1:10, size = 10), ] 472s > 472s > toy_design <- svrepdesign(variables = toy[, 1:4], 472s + weights = toy$weight, 472s + repweights = toy_repweights, 472s + type = "JK1", 472s + scale = 0.9) 472s > 472s > # Get the sum of the weights for the full sample 472s > poptotals <- as.data.frame(svyby(formula = ~dummy, 472s + by = ~class, 472s + design = toy_design, 472s + FUN = survey::svytotal)) 472s > 472s > poptotals$Freq <- poptotals$dummy 472s > poptotals$dummy <- NULL 472s > poptotals$se <- NULL 472s > 472s > # Adjust the weights of the responding sample to match to the full sample 472s > adjusted <- postStratify(design = subset(toy_design, responded), 472s + strata = ~class, 472s + population = poptotals) 472s > 472s > # This works for the weights... 472s > svyby(formula = ~dummy, 472s + by = ~class, 472s + design = adjusted, 472s + FUN = survey::svytotal) 472s class dummy se 472s A A 500 0 472s B B 500 0 472s > 472s > # ...and some, but not all, the replicate weights 472s > stopifnot(all.equal(colSums(toy_design$repweights), colSums(adjusted$repweights))) 472s > 472s > 472s > 472s BEGIN TEST twophase.R 472s 472s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 472s Copyright (C) 2024 The R Foundation for Statistical Computing 472s Platform: arm-unknown-linux-gnueabihf (32-bit) 472s 472s R is free software and comes with ABSOLUTELY NO WARRANTY. 472s You are welcome to redistribute it under certain conditions. 472s Type 'license()' or 'licence()' for distribution details. 472s 472s R is a collaborative project with many contributors. 472s Type 'contributors()' for more information and 472s 'citation()' on how to cite R or R packages in publications. 472s 472s Type 'demo()' for some demos, 'help()' for on-line help, or 472s 'help.start()' for an HTML browser interface to help. 472s Type 'q()' to quit R. 472s 473s > library(survey) 473s Loading required package: grid 473s Loading required package: Matrix 475s Loading required package: survival 475s > 475s > ## two-phase simple random sampling. 475s > data(pbc, package="survival") 475s > pbc$id<-1:nrow(pbc) 475s > pbc$randomized<-with(pbc, !is.na(trt) & trt>-9) 475s > (d2pbc<-twophase(id=list(~id,~id), data=pbc, subset=~I(!randomized))) 475s Two-phase sparse-matrix design: 475s twophase2(id = id, strata = strata, probs = probs, fpc = fpc, 475s subset = subset, data = data) 475s Phase 1: 475s Independent Sampling design (with replacement) 475s svydesign(ids = ~id) 475s Phase 2: 475s Independent Sampling design 475s svydesign(ids = ~id, fpc = `*phase1*`) 475s > m<-svymean(~bili, d2pbc) 475s > all.equal(as.vector(coef(m)),with(pbc, mean(bili[!randomized]))) 475s [1] TRUE 475s > all.equal(as.vector(SE(m)), 475s + with(pbc, sd(bili[!randomized])/sqrt(sum(!randomized))), 475s + tolerance=0.002) 475s [1] TRUE 475s > 475s > ## two-stage sampling as two-phase 475s > data(mu284) 475s > ii<-with(mu284, c(1:15, rep(1:5,n2[1:5]-3))) 475s > mu284.1<-mu284[ii,] 475s > mu284.1$id<-1:nrow(mu284.1) 475s > mu284.1$sub<-rep(c(TRUE,FALSE),c(15,34-15)) 475s > dmu284<-svydesign(id=~id1+id2,fpc=~n1+n2, data=mu284) 475s > ## first phase cluster sample, second phase stratified within cluster 475s > (d2mu284<-twophase(id=list(~id1,~id),strata=list(NULL,~id1), 475s + fpc=list(~n1,NULL),data=mu284.1,subset=~sub,method="approx")) 475s Two-phase design: twophase(id = list(~id1, ~id), strata = list(NULL, ~id1), fpc = list(~n1, 475s NULL), data = mu284.1, subset = ~sub, method = "approx") 475s Phase 1: 475s 1 - level Cluster Sampling design 475s With (5) clusters. 475s svydesign(ids = ~id1, fpc = ~n1) 475s Phase 2: 475s Stratified Independent Sampling design 475s svydesign(ids = ~id, strata = ~id1, fpc = `*phase1*`) 475s > (d22mu284<-twophase(id=list(~id1,~id),strata=list(NULL,~id1), 475s + fpc=list(~n1,NULL),data=mu284.1,subset=~sub,method="full")) 475s Two-phase sparse-matrix design: 475s twophase2(id = id, strata = strata, probs = probs, fpc = fpc, 475s subset = subset, data = data) 475s Phase 1: 475s 1 - level Cluster Sampling design 475s With (5) clusters. 475s svydesign(ids = ~id1, fpc = ~n1) 475s Phase 2: 475s Stratified Independent Sampling design 475s svydesign(ids = ~id, strata = ~id1, fpc = `*phase1*`) 475s > summary(d2mu284) 475s Two-phase design: twophase(id = list(~id1, ~id), strata = list(NULL, ~id1), fpc = list(~n1, 475s NULL), data = mu284.1, subset = ~sub, method = "approx") 475s Phase 1: 475s 1 - level Cluster Sampling design 475s With (5) clusters. 475s svydesign(ids = ~id1, fpc = ~n1) 475s Probabilities: 475s Min. 1st Qu. Median Mean 3rd Qu. Max. 475s 0.1 0.1 0.1 0.1 0.1 0.1 475s Population size (PSUs): 50 475s Phase 2: 475s Stratified Independent Sampling design 475s svydesign(ids = ~id, strata = ~id1, fpc = `*phase1*`) 475s Probabilities: 475s Min. 1st Qu. Median Mean 3rd Qu. Max. 475s 0.3333 0.3750 0.4286 0.4674 0.6000 0.6000 475s Stratum Sizes: 475s 19 31 45 47 50 475s obs 3 3 3 3 3 475s design.PSU 3 3 3 3 3 475s actual.PSU 3 3 3 3 3 475s Population stratum sizes (PSUs): 475s 19 31 45 47 50 475s 5 7 8 5 9 475s Data variables: 475s [1] "id1" "n1" "id2" "y1" "n2" "id" "sub" 475s > t1<-svytotal(~y1, dmu284) 475s > t2<-svytotal(~y1, d2mu284) 475s > t22<-svytotal(~y1,d22mu284) 475s > m1<-svymean(~y1, dmu284) 475s > m2<-svymean(~y1, d2mu284) 475s > m22<-svymean(~y1, d22mu284) 475s > all.equal(coef(t1),coef(t2)) 475s [1] TRUE 475s > all.equal(coef(t1),coef(t22)) 475s [1] TRUE 475s > all.equal(coef(m1),coef(m2)) 475s [1] TRUE 475s > all.equal(coef(m1),coef(m22)) 475s [1] TRUE 475s > all.equal(as.vector(SE(m1)),as.vector(SE(m2))) 475s [1] TRUE 475s > all.equal(as.vector(SE(m1)),as.vector(SE(m22))) 475s [1] TRUE 475s > all.equal(as.vector(SE(t1)),as.vector(SE(t2))) 475s [1] TRUE 475s > all.equal(as.vector(SE(t1)),as.vector(SE(t22))) 475s [1] TRUE 475s > 475s > ## case-cohort design 475s > ##this example requires R 2.3.1 or later for cch and data. 475s > library("survival") 475s > data(nwtco, package="survival") 475s > ## unstratified, equivalent to Lin & Ying (1993) 475s > print(dcchs<-twophase(id=list(~seqno,~seqno), strata=list(NULL,~rel), 475s + subset=~I(in.subcohort | rel), data=nwtco)) 475s 475s Attaching package: 'survey' 475s 475s The following object is masked from 'package:graphics': 475s 475s dotchart 475s 475s Two-phase sparse-matrix design: 475s twophase2(id = id, strata = strata, probs = probs, fpc = fpc, 475s subset = subset, data = data) 475s Phase 1: 475s Independent Sampling design (with replacement) 475s svydesign(ids = ~seqno) 475s Phase 2: 475s Stratified Independent Sampling design 475s svydesign(ids = ~seqno, strata = ~rel, fpc = `*phase1*`) 475s > cch1<-svycoxph(Surv(edrel,rel)~factor(stage)+factor(histol)+I(age/12), 475s + design=dcchs) 475s > dcchs2<-twophase(id=list(~seqno,~seqno), strata=list(NULL,~rel), 475s + subset=~I(in.subcohort | rel), data=nwtco,method="approx") 475s > cch1.2<-svycoxph(Surv(edrel,rel)~factor(stage)+factor(histol)+I(age/12), 475s + design=dcchs) 475s > all.equal(coef(cch1),coef(cch1.2)) 475s [1] TRUE 475s > all.equal(SE(cch1),SE(cch1.2)) 475s [1] TRUE 475s > ## Using survival::cch 475s > subcoh <- nwtco$in.subcohort 475s > selccoh <- with(nwtco, rel==1|subcoh==1) 475s > ccoh.data <- nwtco[selccoh,] 475s > ccoh.data$subcohort <- subcoh[selccoh] 475s > cch2<-cch(Surv(edrel, rel) ~ factor(stage) + factor(histol) + I(age/12), 475s + data =ccoh.data, subcoh = ~subcohort, id=~seqno, 475s + cohort.size=4028, method="LinYing", robust=TRUE) 475s > 475s > print(all.equal(as.vector(coef(cch1)),as.vector(coef(cch2)))) 475s [1] TRUE 475s > ## cch has smaller variances by a factor of 1.0005 because 475s > ## there is a (n/(n-1)) in the survey phase1 varianace 475s > print(all.equal(as.vector(SE(cch1)), as.vector(SE(cch2)),tolerance=0.0006)) 475s [1] TRUE 475s > 475s > 475s > ## bug report from Takahiro Tsuchiya for version 3.4 475s > ## We used to not match Sarndal exactly, because our old phase-one 475s > ## estimator had a small bias for finite populations 475s > rei<-read.table(tmp<-textConnection( 475s + " id N n.a h n.ah n.h sub y 475s + 1 1 300 20 1 12 5 TRUE 1 475s + 2 2 300 20 1 12 5 TRUE 2 475s + 3 3 300 20 1 12 5 TRUE 3 475s + 4 4 300 20 1 12 5 TRUE 4 475s + 5 5 300 20 1 12 5 TRUE 5 475s + 6 6 300 20 1 12 5 FALSE NA 475s + 7 7 300 20 1 12 5 FALSE NA 475s + 8 8 300 20 1 12 5 FALSE NA 475s + 9 9 300 20 1 12 5 FALSE NA 475s + 10 10 300 20 1 12 5 FALSE NA 475s + 11 11 300 20 1 12 5 FALSE NA 475s + 12 12 300 20 1 12 5 FALSE NA 475s + 13 13 300 20 2 8 3 TRUE 6 475s + 14 14 300 20 2 8 3 TRUE 7 475s + 15 15 300 20 2 8 3 TRUE 8 475s + 16 16 300 20 2 8 3 FALSE NA 475s + 17 17 300 20 2 8 3 FALSE NA 475s + 18 18 300 20 2 8 3 FALSE NA 475s + 19 19 300 20 2 8 3 FALSE NA 475s + 20 20 300 20 2 8 3 FALSE NA 475s + "), header=TRUE) 475s > close(tmp) 475s > 475s > des.rei <- twophase(id=list(~id,~id), strata=list(NULL,~h), 475s + fpc=list(~N,NULL), subset=~sub, data=rei, method="approx") 475s > tot<- svytotal(~y, des.rei) 475s > des.rei2 <- twophase(id=list(~id,~id), strata=list(NULL,~h), 475s + fpc=list(~N,NULL), subset=~sub, data=rei) 475s > tot2<- svytotal(~y, des.rei2) 475s > 475s > ## based on Sarndal et al (9.4.14) 475s > rei$w.ah <- rei$n.ah / rei$n.a 475s > a.rei <- aggregate(rei, by=list(rei$h), mean, na.rm=TRUE) 475s > a.rei$S.ysh <- tapply(rei$y, rei$h, var, na.rm=TRUE) 475s > a.rei$y.u <- sum(a.rei$w.ah * a.rei$y) 475s > V <- with(a.rei, sum(N * (N-1) * ((n.ah-1)/(n.a-1) - (n.h-1)/(N-1)) * w.ah * S.ysh / n.h)) 475s > V <- V + with(a.rei, sum(N * (N-n.a) * w.ah * (y - y.u)^2 / (n.a-1))) 475s > 475s > a.rei$f.h<-with(a.rei, n.h/n.ah) 475s > Vphase2<-with(a.rei, sum(N*N*w.ah^2* ((1-f.h)/n.h) *S.ysh)) 475s > 475s > a.rei$f<-with(a.rei, n.a/N) 475s > a.rei$delta.h<-with(a.rei, (1/n.h)*(n.a-n.ah)/(n.a-1)) 475s > Vphase1<-with(a.rei, sum(N*N*((1-f)/n.a)*( w.ah*(1-delta.h)*S.ysh+ ((n.a)/(n.a-1))*w.ah*(y-y.u)^2))) 475s > 475s > V 475s [1] 36522.63 475s > Vphase1 475s [1] 24072.63 475s > Vphase2 475s [1] 12450 475s > vcov(tot) 475s y 475s y 35911.05 475s attr(,"phases") 475s attr(,"phases")$phase1 475s [,1] 475s [1,] 23461.05 475s 475s attr(,"phases")$phase2 475s y 475s y 12450 475s 475s > vcov(tot2) 475s [,1] 475s [1,] 36522.63 475s attr(,"phases") 475s attr(,"phases")$phase1 475s [,1] 475s [1,] 24072.63 475s 475s attr(,"phases")$phase2 475s [,1] 475s [1,] 12450 475s 475s > ## phase 2 identical 475s > all.equal(Vphase2,drop(attr(vcov(tot),"phases")$phase2)) 475s [1] TRUE 475s > all.equal(Vphase2,drop(attr(vcov(tot2),"phases")$phase2)) 475s [1] TRUE 475s > ## phase 1 differs by 2.6% for old twophase estimator 475s > Vphase1/attr(vcov(tot),"phases")$phase1 475s [,1] 475s [1,] 1.026068 475s > all.equal(Vphase1,as.vector(attr(vcov(tot2),"phases")$phase1)) 475s [1] TRUE 475s > 475s > 475s autopkgtest [12:50:53]: test run-unit-test: -----------------------] 479s run-unit-test PASS 479s autopkgtest [12:50:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 483s autopkgtest [12:51:01]: test pkg-r-autopkgtest: preparing testbed 494s Reading package lists... 495s Building dependency tree... 495s Reading state information... 495s Starting pkgProblemResolver with broken count: 0 495s Starting 2 pkgProblemResolver with broken count: 0 495s Done 496s The following additional packages will be installed: 496s build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf 496s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-13 g++-13-arm-linux-gnueabihf 496s g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf 496s gcc-arm-linux-gnueabihf gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf 496s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libatomic1 libblas-dev 496s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 496s libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 496s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 496s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 496s libreadline-dev libstdc++-13-dev libubsan1 linux-libc-dev pkg-config 496s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-hexbin rpcsvc-proto 496s zlib1g-dev 496s Suggested packages: 496s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 496s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 496s gdb-arm-linux-gnueabihf gfortran-doc gfortran-13-doc libcoarrays-dev 496s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 496s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 496s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 496s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-affy 496s r-bioc-biobase r-bioc-limma 496s Recommended packages: 496s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 496s The following NEW packages will be installed: 496s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf 496s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-13 g++-13-arm-linux-gnueabihf 496s g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf 496s gcc-arm-linux-gnueabihf gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf 496s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libatomic1 libblas-dev 496s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 496s libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 496s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 496s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 496s libreadline-dev libstdc++-13-dev libubsan1 linux-libc-dev pkg-config 496s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-hexbin rpcsvc-proto 496s zlib1g-dev 496s 0 upgraded, 57 newly installed, 0 to remove and 1 not upgraded. 496s Need to get 76.0 MB/76.0 MB of archives. 496s After this operation, 234 MB of additional disk space will be used. 496s Get:1 /tmp/autopkgtest.Cwxubq/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [768 B] 496s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu6 [19.1 kB] 496s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-libc-dev armhf 6.8.0-20.20 [1555 kB] 497s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] 497s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu6 [63.7 kB] 497s Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu6 [1351 kB] 497s Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libisl23 armhf 0.26-3 [595 kB] 497s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libmpc3 armhf 1.3.1-1 [46.4 kB] 497s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [8757 kB] 497s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13 armhf 13.2.0-21ubuntu1 [1028 B] 497s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] 497s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] 497s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcc1-0 armhf 14-20240315-1ubuntu1 [39.0 kB] 497s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libatomic1 armhf 14-20240315-1ubuntu1 [7824 B] 497s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libasan8 armhf 14-20240315-1ubuntu1 [2941 kB] 497s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libubsan1 armhf 14-20240315-1ubuntu1 [1152 kB] 497s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-13-dev armhf 13.2.0-21ubuntu1 [899 kB] 497s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [16.8 MB] 498s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13 armhf 13.2.0-21ubuntu1 [450 kB] 498s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] 498s Get:21 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] 498s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++-13-dev armhf 13.2.0-21ubuntu1 [2456 kB] 498s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [9938 kB] 498s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13 armhf 13.2.0-21ubuntu1 [14.5 kB] 498s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] 498s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] 498s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 498s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf dctrl-tools armhf 2.24-3build2 [57.2 kB] 498s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran-13-dev armhf 13.2.0-21ubuntu1 [359 kB] 498s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [9179 kB] 498s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gfortran-13 armhf 13.2.0-21ubuntu1 [10.9 kB] 498s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1024 B] 498s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf gfortran armhf 4:13.2.0-7ubuntu1 [1166 B] 498s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf icu-devtools armhf 74.2-1ubuntu1 [201 kB] 498s Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libblas-dev armhf 3.12.0-3 [132 kB] 498s Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-dev armhf 1.0.8-5ubuntu1 [30.4 kB] 498s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libicu-dev armhf 74.2-1ubuntu1 [11.6 MB] 499s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu1 [263 kB] 499s Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] 499s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] 499s Get:41 http://ftpmaster.internal/ubuntu noble/main armhf liblapack-dev armhf 3.12.0-3 [2177 kB] 499s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libncurses-dev armhf 6.4+20240113-1ubuntu1 [501 kB] 499s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-16-0 armhf 10.42-4ubuntu1 [180 kB] 499s Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-32-0 armhf 10.42-4ubuntu1 [171 kB] 499s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-posix3 armhf 10.42-4ubuntu1 [6096 B] 499s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-dev armhf 10.42-4ubuntu1 [664 kB] 499s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libpkgconf3 armhf 1.8.1-2 [26.3 kB] 499s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu1 [880 kB] 499s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng-dev armhf 1.6.43-3 [248 kB] 499s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline-dev armhf 8.2-4 [153 kB] 499s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf-bin armhf 1.8.1-2 [20.6 kB] 499s Get:52 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf armhf 1.8.1-2 [16.7 kB] 499s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf pkg-config armhf 1.8.1-2 [7170 B] 499s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma-dev armhf 5.6.0-0.2 [166 kB] 499s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-dev all 4.3.3-2build1 [4334 B] 499s Get:56 http://ftpmaster.internal/ubuntu noble/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 499s Get:57 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-hexbin armhf 1.28.3-1 [1576 kB] 499s Fetched 76.0 MB in 3s (28.4 MB/s) 499s Selecting previously unselected package libc-dev-bin. 499s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79751 files and directories currently installed.) 499s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_armhf.deb ... 499s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 499s Selecting previously unselected package linux-libc-dev:armhf. 499s Preparing to unpack .../01-linux-libc-dev_6.8.0-20.20_armhf.deb ... 499s Unpacking linux-libc-dev:armhf (6.8.0-20.20) ... 500s Selecting previously unselected package libcrypt-dev:armhf. 500s Preparing to unpack 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(13.2.0-21ubuntu1) ... 500s Selecting previously unselected package cpp-13. 500s Preparing to unpack .../08-cpp-13_13.2.0-21ubuntu1_armhf.deb ... 500s Unpacking cpp-13 (13.2.0-21ubuntu1) ... 500s Selecting previously unselected package cpp-arm-linux-gnueabihf. 500s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 500s Unpacking cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 500s Selecting previously unselected package cpp. 500s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_armhf.deb ... 500s Unpacking cpp (4:13.2.0-7ubuntu1) ... 500s Selecting previously unselected package libcc1-0:armhf. 500s Preparing to unpack .../11-libcc1-0_14-20240315-1ubuntu1_armhf.deb ... 500s Unpacking libcc1-0:armhf (14-20240315-1ubuntu1) ... 500s Selecting previously unselected package libatomic1:armhf. 500s Preparing to unpack .../12-libatomic1_14-20240315-1ubuntu1_armhf.deb ... 500s Unpacking libatomic1:armhf (14-20240315-1ubuntu1) ... 500s Selecting previously unselected package libasan8:armhf. 500s Preparing to unpack .../13-libasan8_14-20240315-1ubuntu1_armhf.deb ... 500s Unpacking libasan8:armhf (14-20240315-1ubuntu1) ... 500s Selecting previously unselected package libubsan1:armhf. 501s Preparing to unpack .../14-libubsan1_14-20240315-1ubuntu1_armhf.deb ... 501s Unpacking libubsan1:armhf (14-20240315-1ubuntu1) ... 501s Selecting previously unselected package libgcc-13-dev:armhf. 501s Preparing to unpack .../15-libgcc-13-dev_13.2.0-21ubuntu1_armhf.deb ... 501s Unpacking libgcc-13-dev:armhf (13.2.0-21ubuntu1) ... 501s Selecting previously unselected package gcc-13-arm-linux-gnueabihf. 501s Preparing to unpack .../16-gcc-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ... 501s Unpacking gcc-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 501s Selecting previously unselected package gcc-13. 501s Preparing to unpack .../17-gcc-13_13.2.0-21ubuntu1_armhf.deb ... 501s Unpacking gcc-13 (13.2.0-21ubuntu1) ... 501s Selecting previously unselected package gcc-arm-linux-gnueabihf. 501s Preparing to unpack .../18-gcc-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 501s Unpacking gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 501s Selecting previously unselected package gcc. 501s Preparing to unpack .../19-gcc_4%3a13.2.0-7ubuntu1_armhf.deb ... 501s Unpacking gcc (4:13.2.0-7ubuntu1) ... 501s Selecting previously unselected package libstdc++-13-dev:armhf. 501s Preparing to unpack .../20-libstdc++-13-dev_13.2.0-21ubuntu1_armhf.deb ... 501s Unpacking libstdc++-13-dev:armhf (13.2.0-21ubuntu1) ... 501s Selecting previously unselected package g++-13-arm-linux-gnueabihf. 501s Preparing to unpack .../21-g++-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ... 501s Unpacking g++-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 502s Selecting previously unselected package g++-13. 502s Preparing to unpack .../22-g++-13_13.2.0-21ubuntu1_armhf.deb ... 502s Unpacking g++-13 (13.2.0-21ubuntu1) ... 502s Selecting previously unselected package g++-arm-linux-gnueabihf. 502s Preparing to unpack .../23-g++-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 502s Unpacking g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 502s Selecting previously unselected package g++. 502s Preparing to unpack .../24-g++_4%3a13.2.0-7ubuntu1_armhf.deb ... 502s Unpacking g++ (4:13.2.0-7ubuntu1) ... 502s Selecting previously unselected package build-essential. 502s Preparing to unpack .../25-build-essential_12.10ubuntu1_armhf.deb ... 502s Unpacking build-essential (12.10ubuntu1) ... 502s Selecting previously unselected package dctrl-tools. 502s Preparing to unpack .../26-dctrl-tools_2.24-3build2_armhf.deb ... 502s Unpacking dctrl-tools (2.24-3build2) ... 502s Selecting previously unselected package libgfortran-13-dev:armhf. 502s Preparing to unpack .../27-libgfortran-13-dev_13.2.0-21ubuntu1_armhf.deb ... 502s Unpacking libgfortran-13-dev:armhf (13.2.0-21ubuntu1) ... 502s Selecting previously unselected package gfortran-13-arm-linux-gnueabihf. 502s Preparing to unpack .../28-gfortran-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ... 502s Unpacking gfortran-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 502s Selecting previously unselected package gfortran-13. 502s Preparing to unpack .../29-gfortran-13_13.2.0-21ubuntu1_armhf.deb ... 502s Unpacking gfortran-13 (13.2.0-21ubuntu1) ... 503s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 503s Preparing to unpack .../30-gfortran-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 503s Unpacking gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 503s Selecting previously unselected package gfortran. 503s Preparing to unpack .../31-gfortran_4%3a13.2.0-7ubuntu1_armhf.deb ... 503s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 503s Selecting previously unselected package icu-devtools. 503s Preparing to unpack .../32-icu-devtools_74.2-1ubuntu1_armhf.deb ... 503s Unpacking icu-devtools (74.2-1ubuntu1) ... 503s Selecting previously unselected package libblas-dev:armhf. 503s Preparing to unpack .../33-libblas-dev_3.12.0-3_armhf.deb ... 503s Unpacking libblas-dev:armhf (3.12.0-3) ... 503s Selecting previously unselected package libbz2-dev:armhf. 503s Preparing to unpack .../34-libbz2-dev_1.0.8-5ubuntu1_armhf.deb ... 503s Unpacking libbz2-dev:armhf (1.0.8-5ubuntu1) ... 503s Selecting previously unselected package libicu-dev:armhf. 503s Preparing to unpack .../35-libicu-dev_74.2-1ubuntu1_armhf.deb ... 503s Unpacking libicu-dev:armhf (74.2-1ubuntu1) ... 503s Selecting previously unselected package libjpeg-turbo8-dev:armhf. 503s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-2ubuntu1_armhf.deb ... 503s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ... 503s Selecting previously unselected package libjpeg8-dev:armhf. 503s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ... 503s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ... 503s Selecting previously unselected package libjpeg-dev:armhf. 503s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ... 503s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 503s Selecting previously unselected package liblapack-dev:armhf. 503s Preparing to unpack .../39-liblapack-dev_3.12.0-3_armhf.deb ... 503s Unpacking liblapack-dev:armhf (3.12.0-3) ... 503s Selecting previously unselected package libncurses-dev:armhf. 503s Preparing to unpack .../40-libncurses-dev_6.4+20240113-1ubuntu1_armhf.deb ... 503s Unpacking libncurses-dev:armhf (6.4+20240113-1ubuntu1) ... 503s Selecting previously unselected package libpcre2-16-0:armhf. 503s Preparing to unpack .../41-libpcre2-16-0_10.42-4ubuntu1_armhf.deb ... 503s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu1) ... 504s Selecting previously unselected package libpcre2-32-0:armhf. 504s Preparing to unpack .../42-libpcre2-32-0_10.42-4ubuntu1_armhf.deb ... 504s Unpacking libpcre2-32-0:armhf (10.42-4ubuntu1) ... 504s Selecting previously unselected package libpcre2-posix3:armhf. 504s Preparing to unpack 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(5.6.0-0.2) ... 504s Setting up libubsan1:armhf (14-20240315-1ubuntu1) ... 504s Setting up libpcre2-posix3:armhf (10.42-4ubuntu1) ... 504s Setting up libcrypt-dev:armhf (1:4.4.36-4) ... 504s Setting up libasan8:armhf (14-20240315-1ubuntu1) ... 504s Setting up libisl23:armhf (0.26-3) ... 504s Setting up libc-dev-bin (2.39-0ubuntu6) ... 504s Setting up libcc1-0:armhf (14-20240315-1ubuntu1) ... 504s Setting up libblas-dev:armhf (3.12.0-3) ... 504s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 504s Setting up dctrl-tools (2.24-3build2) ... 504s Setting up cpp-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 504s Setting up pkgconf:armhf (1.8.1-2) ... 504s Setting up liblapack-dev:armhf (3.12.0-3) ... 504s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 504s Setting up pkg-config:armhf (1.8.1-2) ... 504s Setting up libgcc-13-dev:armhf (13.2.0-21ubuntu1) ... 504s Setting up libc6-dev:armhf (2.39-0ubuntu6) ... 504s Setting up libgfortran-13-dev:armhf (13.2.0-21ubuntu1) ... 504s Setting up libicu-dev:armhf (74.2-1ubuntu1) ... 504s Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 504s Setting up libstdc++-13-dev:armhf (13.2.0-21ubuntu1) ... 504s Setting up libbz2-dev:armhf (1.0.8-5ubuntu1) ... 504s Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ... 504s Setting up libncurses-dev:armhf (6.4+20240113-1ubuntu1) ... 504s Setting up libpcre2-dev:armhf (10.42-4ubuntu1) ... 504s Setting up cpp-13 (13.2.0-21ubuntu1) ... 504s Setting up libreadline-dev:armhf (8.2-4) ... 504s Setting up gcc-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 504s Setting up gcc-13 (13.2.0-21ubuntu1) ... 504s Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu1) ... 504s Setting up cpp (4:13.2.0-7ubuntu1) ... 504s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 504s Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 504s Setting up g++-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 504s Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ... 504s Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 504s Setting up g++-13 (13.2.0-21ubuntu1) ... 504s Setting up libpng-dev:armhf (1.6.43-3) ... 504s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 504s Setting up gcc (4:13.2.0-7ubuntu1) ... 504s Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 504s Setting up gfortran-13 (13.2.0-21ubuntu1) ... 504s Setting up g++ (4:13.2.0-7ubuntu1) ... 504s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 504s Setting up build-essential (12.10ubuntu1) ... 504s Setting up gfortran (4:13.2.0-7ubuntu1) ... 504s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 504s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 504s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 504s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 504s Setting up r-base-dev (4.3.3-2build1) ... 504s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 504s Setting up autopkgtest-satdep (0) ... 504s Processing triggers for man-db (2.12.0-3build4) ... 505s Processing triggers for install-info (7.1-3build1) ... 505s Processing triggers for libc-bin (2.39-0ubuntu6) ... 516s (Reading database ... 83224 files and directories currently installed.) 516s Removing autopkgtest-satdep (0) ... 521s autopkgtest [12:51:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 521s autopkgtest [12:51:39]: test pkg-r-autopkgtest: [----------------------- 523s Test: Try to load the R library survey 523s 523s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 523s Copyright (C) 2024 The R Foundation for Statistical Computing 523s Platform: arm-unknown-linux-gnueabihf (32-bit) 523s 523s R is free software and comes with ABSOLUTELY NO WARRANTY. 523s You are welcome to redistribute it under certain conditions. 523s Type 'license()' or 'licence()' for distribution details. 523s 523s R is a collaborative project with many contributors. 523s Type 'contributors()' for more information and 523s 'citation()' on how to cite R or R packages in publications. 523s 523s Type 'demo()' for some demos, 'help()' for on-line help, or 523s 'help.start()' for an HTML browser interface to help. 523s Type 'q()' to quit R. 523s 524s > library('survey') 524s Loading required package: grid 524s Loading required package: Matrix 525s Loading required package: survival 525s 525s Attaching package: ‘survey’ 525s 525s The following object is masked from ‘package:graphics’: 525s 525s dotchart 525s 525s > 525s > 525s Other tests are currently unsupported! 525s They will be progressively added. 525s autopkgtest [12:51:43]: test pkg-r-autopkgtest: -----------------------] 529s autopkgtest [12:51:47]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 529s pkg-r-autopkgtest PASS 533s autopkgtest [12:51:51]: @@@@@@@@@@@@@@@@@@@@ summary 533s run-unit-test PASS 533s pkg-r-autopkgtest PASS