0s autopkgtest [12:18:00]: starting date and time: 2024-03-26 12:18:00+0000
  0s autopkgtest [12:18:00]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [12:18:00]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.52my27dp/out --timeout-copy=6000 --setup-commands 'dhclient || true; ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade r-cran-matrixstats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- lxd -r lxd-armhf-10.44.124.215 lxd-armhf-10.44.124.215:autopkgtest/ubuntu/noble/armhf
 43s autopkgtest [12:18:43]: testbed dpkg architecture: armhf
 45s autopkgtest [12:18:45]: testbed apt version: 2.7.12
 45s autopkgtest [12:18:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 47s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 48s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
 48s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4019 kB]
 48s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B]
 48s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB]
 48s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [669 kB]
 48s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B]
 48s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B]
 48s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B]
 48s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4075 kB]
 48s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B]
 48s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [49.1 kB]
 48s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B]
 56s Fetched 9502 kB in 3s (3716 kB/s)
 56s Reading package lists...
 62s Get:1 http://ports.ubuntu.com/ubuntu-ports noble-proposed InRelease [117 kB]
 62s Get:2 http://ports.ubuntu.com/ubuntu-ports noble-proposed/main armhf Packages [669 kB]
 62s Get:3 http://ports.ubuntu.com/ubuntu-ports noble-proposed/main armhf c-n-f Metadata [2492 B]
 62s Get:4 http://ports.ubuntu.com/ubuntu-ports noble-proposed/universe armhf Packages [4073 kB]
 63s Get:5 http://ports.ubuntu.com/ubuntu-ports noble-proposed/universe armhf c-n-f Metadata [7776 B]
 63s Get:6 http://ports.ubuntu.com/ubuntu-ports noble-proposed/restricted armhf Packages [1372 B]
 63s Get:7 http://ports.ubuntu.com/ubuntu-ports noble-proposed/restricted armhf c-n-f Metadata [116 B]
 63s Get:8 http://ports.ubuntu.com/ubuntu-ports noble-proposed/multiverse armhf Packages [49.1 kB]
 63s Get:9 http://ports.ubuntu.com/ubuntu-ports noble-proposed/multiverse armhf c-n-f Metadata [116 B]
 69s Fetched 4919 kB in 2s (2750 kB/s)
 69s Reading package lists...
 77s sh: 1: dhclient: not found
 78s tee: /proc/self/fd/2: Permission denied
106s Hit:1 http://ports.ubuntu.com/ubuntu-ports noble-proposed InRelease
106s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
106s Hit:3 http://ports.ubuntu.com/ubuntu-ports noble InRelease
106s Hit:4 http://ftpmaster.internal/ubuntu noble-updates InRelease
106s Hit:5 http://ports.ubuntu.com/ubuntu-ports noble-updates InRelease
106s Hit:6 http://ftpmaster.internal/ubuntu noble-security InRelease
106s Hit:7 http://ports.ubuntu.com/ubuntu-ports noble-backports InRelease
106s Hit:8 http://ftpmaster.internal/ubuntu noble-proposed InRelease
106s Hit:9 http://ports.ubuntu.com/ubuntu-ports noble-security InRelease
109s Reading package lists...
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
111s Calculating upgrade...
112s The following packages were automatically installed and are no longer required:
112s   linux-headers-6.8.0-11 python3-distutils python3-lib2to3
112s Use 'apt autoremove' to remove them.
113s The following packages will be REMOVED:
113s   libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1
113s   libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11
113s   libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2
113s   libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0
113s   libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic
113s The following NEW packages will be installed:
113s   libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64
113s   libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
113s   libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64
113s   libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64
113s   libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64
113s   libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20
113s   linux-headers-6.8.0-20-generic xdg-user-dirs
113s The following packages have been kept back:
113s   multipath-tools
113s The following packages will be upgraded:
113s   apparmor apt apt-utils base-files bind9-dnsutils bind9-host bind9-libs
113s   binutils binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils
113s   bsdutils btrfs-progs cloud-init coreutils cryptsetup-bin curl dbus dbus-bin
113s   dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session
113s   debianutils dhcpcd-base dirmngr dmsetup dpkg dpkg-dev e2fsprogs
113s   e2fsprogs-l10n eject fdisk file fonts-ubuntu-console ftp fwupd gawk
113s   gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg
113s   gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv
113s   groff-base ibverbs-providers inetutils-telnet info initramfs-tools
113s   initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd
113s   kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils
113s   libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
113s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
113s   libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libbsd0 libc-bin libc6
113s   libcap-ng0 libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3
113s   libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7
113s   libexpat1 libfdisk1 libfido2-1 libftdi1-2 libfwupd2 libgcc-s1
113s   libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0
113s   libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0
113s   libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0
113s   libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc
113s   libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2
113s   libnss-systemd libpam-modules libpam-modules-bin libpam-runtime
113s   libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0
113s   libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib
113s   libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal
113s   libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1
113s   libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1
113s   libsemanage-common libsemanage2 libsframe1 libslang2 libsmartcols1
113s   libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared libsystemd0
113s   libtext-charwidth-perl libtext-iconv-perl libtirpc-common libudev1
113s   libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1
113s   linux-headers-generic locales logsave lshw lsof man-db motd-news-config
113s   mount mtr-tiny netplan-generator netplan.io openssh-client openssh-server
113s   openssh-sftp-server openssl parted perl perl-base perl-modules-5.38
113s   pinentry-curses plymouth plymouth-theme-ubuntu-text procps psmisc
113s   python-apt-common python3 python3-apt python3-cryptography python3-dbus
113s   python3-distutils python3-gdbm python3-gi python3-lib2to3 python3-markupsafe
113s   python3-minimal python3-netplan python3-pkg-resources python3-pyrsistent
113s   python3-setuptools python3-typing-extensions python3-yaml python3.11
113s   python3.11-minimal python3.12 python3.12-minimal readline-common rsync
113s   rsyslog shared-mime-info sudo systemd systemd-dev systemd-resolved
113s   systemd-sysv systemd-timesyncd tcpdump telnet tnftp ubuntu-minimal
113s   ubuntu-pro-client ubuntu-pro-client-l10n ubuntu-standard udev udisks2
113s   usb.ids util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g
114s 246 upgraded, 32 newly installed, 30 to remove and 1 not upgraded.
114s Need to get 109 MB of archives.
114s After this operation, 85.0 MB of additional disk space will be used.
114s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf motd-news-config all 13ubuntu8 [5098 B]
114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB]
114s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB]
114s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB]
114s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.39-0ubuntu6 [2827 kB]
114s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-files armhf 13ubuntu8 [73.9 kB]
114s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB]
114s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB]
115s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB]
115s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB]
115s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB]
115s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB]
115s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB]
115s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB]
115s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB]
115s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB]
115s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB]
115s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB]
115s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB]
115s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB]
115s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB]
115s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B]
115s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB]
115s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB]
115s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB]
115s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB]
115s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB]
115s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB]
115s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB]
115s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB]
116s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB]
116s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB]
116s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB]
116s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB]
116s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB]
116s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB]
116s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB]
116s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB]
116s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB]
116s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB]
116s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB]
116s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB]
116s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-minimal armhf 1.536build1 [10.7 kB]
116s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B]
116s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB]
116s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB]
116s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB]
116s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB]
116s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B]
116s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB]
116s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB]
116s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB]
116s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB]
116s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB]
116s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-2 [4350 kB]
117s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.2 [19.4 kB]
117s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.2 [216 kB]
117s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB]
117s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB]
117s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB]
117s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB]
117s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB]
117s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B]
117s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB]
117s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB]
117s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
118s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu1.1 [17.1 kB]
118s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB]
118s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB]
118s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B]
118s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB]
119s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB]
119s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB]
119s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB]
119s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB]
119s Get:76 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B]
119s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB]
120s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB]
120s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB]
120s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB]
120s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB]
120s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB]
120s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4 [129 kB]
120s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB]
120s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB]
120s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB]
120s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB]
120s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB]
120s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.7 [162 kB]
120s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB]
120s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB]
120s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB]
120s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB]
120s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB]
121s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB]
121s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu8 [290 kB]
121s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-2 [123 kB]
121s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
121s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB]
121s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB]
121s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu2 [137 kB]
121s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB]
122s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB]
122s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB]
122s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB]
122s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB]
122s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB]
122s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB]
122s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB]
123s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB]
123s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB]
125s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB]
125s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B]
125s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB]
125s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB]
126s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB]
126s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB]
126s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB]
126s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB]
126s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB]
126s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB]
126s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB]
126s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB]
126s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB]
126s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B]
126s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB]
126s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB]
126s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB]
127s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB]
127s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB]
127s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB]
127s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB]
127s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB]
127s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB]
127s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB]
127s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB]
127s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB]
127s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB]
127s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB]
127s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB]
127s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB]
127s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB]
127s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB]
127s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB]
127s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4 [56.4 kB]
127s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB]
127s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.7 [19.8 kB]
127s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
127s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
127s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB]
127s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB]
127s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB]
127s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B]
127s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB]
127s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB]
127s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB]
127s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB]
127s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB]
127s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
127s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB]
127s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB]
127s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB]
127s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB]
128s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB]
128s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B]
128s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB]
128s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB]
128s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu1 [119 kB]
128s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-6ubuntu1 [320 kB]
128s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-6ubuntu1 [31.5 kB]
128s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-6ubuntu1 [78.6 kB]
128s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
128s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB]
128s Get:174 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.39-0ubuntu6 [530 kB]
128s Get:175 http://ftpmaster.internal/ubuntu noble/main armhf locales all 2.39-0ubuntu6 [4232 kB]
128s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu2 [49.0 kB]
128s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu2 [700 kB]
128s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu6 [665 kB]
129s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu6 [385 kB]
129s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B]
129s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB]
129s Get:182 http://ftpmaster.internal/ubuntu noble/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB]
129s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB]
129s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB]
129s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB]
129s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B]
129s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB]
129s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB]
129s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB]
129s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB]
129s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B]
129s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB]
129s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB]
129s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB]
129s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B]
129s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB]
129s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B]
129s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB]
129s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB]
129s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB]
129s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB]
129s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB]
129s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB]
130s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB]
130s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB]
130s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB]
130s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB]
130s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB]
130s Get:209 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.17 [88.9 kB]
130s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB]
130s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu8 [219 kB]
130s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu8 [296 kB]
130s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB]
130s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB]
130s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB]
130s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB]
130s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB]
130s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB]
130s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB]
130s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB]
131s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB]
131s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB]
131s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB]
131s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB]
131s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB]
131s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB]
131s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-21ubuntu1 [48.3 kB]
131s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB]
131s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB]
131s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-6ubuntu1 [13.8 kB]
131s Get:231 http://ftpmaster.internal/ubuntu noble/main armhf libbsd0 armhf 0.12.1-1 [36.6 kB]
131s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
131s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB]
131s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsyslog armhf 8.2312.0-3ubuntu7 [460 kB]
131s Get:235 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB]
131s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu6 [62.5 kB]
131s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB]
131s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B]
131s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB]
131s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB]
131s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B]
131s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB]
131s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB]
131s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B]
131s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB]
131s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB]
131s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B]
131s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB]
131s Get:249 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-standard armhf 1.536build1 [10.7 kB]
131s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB]
131s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB]
131s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB]
131s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB]
131s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB]
131s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B]
131s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB]
131s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB]
131s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB]
131s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB]
131s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB]
131s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB]
131s Get:262 http://ftpmaster.internal/ubuntu noble/main armhf fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
131s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB]
131s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB]
131s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB]
131s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB]
131s Get:267 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB]
131s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB]
131s Get:269 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB]
131s Get:270 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB]
132s Get:271 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB]
132s Get:272 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-distutils all 3.12.2-3ubuntu1.1 [133 kB]
132s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB]
132s Get:274 http://ftpmaster.internal/ubuntu noble/main armhf python3-markupsafe armhf 2.1.5-1build1 [12.1 kB]
132s Get:275 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB]
132s Get:276 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB]
132s Get:277 http://ftpmaster.internal/ubuntu noble/main armhf cloud-init all 24.1.2-0ubuntu1 [597 kB]
132s Get:278 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB]
152s Preconfiguring packages ...
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153s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ...
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153s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ...
153s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
153s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ...
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153s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ...
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153s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ...
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153s Preparing to unpack .../libc6_2.39-0ubuntu6_armhf.deb ...
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154s Setting up libc6:armhf (2.39-0ubuntu6) ...
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155s Preparing to unpack .../base-files_13ubuntu8_armhf.deb ...
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157s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ...
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157s Preparing to unpack .../openssl_3.0.13-0ubuntu2_armhf.deb ...
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157s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ...
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157s Preparing to unpack .../0-librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ...
157s Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ...
157s Preparing to unpack .../1-python3.12_3.12.2-4build3_armhf.deb ...
157s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ...
158s Preparing to unpack .../2-libexpat1_2.6.1-2_armhf.deb ...
158s Unpacking libexpat1:armhf (2.6.1-2) over (2.6.0-1) ...
158s Preparing to unpack .../3-python3.12-minimal_3.12.2-4build3_armhf.deb ...
158s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ...
158s Preparing to unpack .../4-libpython3.12-stdlib_3.12.2-4build3_armhf.deb ...
158s Unpacking libpython3.12-stdlib:armhf (3.12.2-4build3) over (3.12.2-1) ...
158s Preparing to unpack .../5-libpython3.12-minimal_3.12.2-4build3_armhf.deb ...
158s Unpacking libpython3.12-minimal:armhf (3.12.2-4build3) over (3.12.2-1) ...
158s Preparing to unpack .../6-parted_3.6-3.1build2_armhf.deb ...
159s Unpacking parted (3.6-3.1build2) over (3.6-3) ...
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159s Removing libparted2:armhf (3.6-3) ...
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159s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_armhf.deb ...
159s Unpacking libblkid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
159s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ...
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159s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ...
159s Unpacking libselinux1:armhf (3.5-2ubuntu1) over (3.5-2build1) ...
159s Setting up libselinux1:armhf (3.5-2ubuntu1) ...
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159s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ...
159s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
159s Preparing to unpack .../systemd-timesyncd_255.4-1ubuntu5_armhf.deb ...
159s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
159s Preparing to unpack .../dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ...
159s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
159s Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ...
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159s Setting up libaudit-common (1:3.1.2-2.1) ...
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159s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ...
159s Unpacking libcap-ng0:armhf (0.8.4-2build1) over (0.8.4-2) ...
160s Setting up libcap-ng0:armhf (0.8.4-2build1) ...
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160s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_armhf.deb ...
160s Unpacking libaudit1:armhf (1:3.1.2-2.1) over (1:3.1.2-2) ...
160s Setting up libaudit1:armhf (1:3.1.2-2.1) ...
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160s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ...
160s Unpacking libpam0g:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
160s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ...
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160s Preparing to unpack .../liblzma5_5.6.0-0.2_armhf.deb ...
160s Unpacking liblzma5:armhf (5.6.0-0.2) over (5.4.5-0.3) ...
160s Setting up liblzma5:armhf (5.6.0-0.2) ...
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160s Preparing to unpack .../0-libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ...
160s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
160s Preparing to unpack .../1-libudisks2-0_2.10.1-6_armhf.deb ...
160s Unpacking libudisks2-0:armhf (2.10.1-6) over (2.10.1-1ubuntu2) ...
161s Preparing to unpack .../2-udisks2_2.10.1-6_armhf.deb ...
161s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ...
161s Preparing to unpack .../3-shared-mime-info_2.4-1build1_armhf.deb ...
161s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ...
161s Preparing to unpack .../4-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ...
161s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
161s Preparing to unpack .../5-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ...
161s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
161s Preparing to unpack .../6-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ...
161s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
161s Preparing to unpack .../7-python3-gi_3.47.0-3build1_armhf.deb ...
162s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ...
162s Preparing to unpack .../8-python3-dbus_1.3.2-5build2_armhf.deb ...
162s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ...
162s dpkg: libgpgme11:armhf: dependency problems, but removing anyway as you requested:
162s  libvolume-key1:armhf depends on libgpgme11 (>= 1.4.1).
162s  libjcat1:armhf depends on libgpgme11 (>= 1.2.0).
162s 
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162s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ...
162s Selecting previously unselected package libgpgme11t64:armhf.
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162s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ...
162s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
162s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_armhf.deb ...
162s Unpacking libvolume-key1:armhf (0.3.12-7build1) over (0.3.12-5build2) ...
162s Selecting previously unselected package libnetplan1:armhf.
162s Preparing to unpack .../02-libnetplan1_1.0-1_armhf.deb ...
162s Unpacking libnetplan1:armhf (1.0-1) ...
162s Preparing to unpack .../03-python3-netplan_1.0-1_armhf.deb ...
162s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ...
162s Preparing to unpack .../04-netplan-generator_1.0-1_armhf.deb ...
162s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
162s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ...
162s Preparing to unpack .../05-initramfs-tools-bin_0.142ubuntu23_armhf.deb ...
162s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ...
163s Preparing to unpack .../06-initramfs-tools-core_0.142ubuntu23_all.deb ...
163s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ...
163s Preparing to unpack .../07-ubuntu-minimal_1.536build1_armhf.deb ...
163s Unpacking ubuntu-minimal (1.536build1) over (1.536) ...
163s Preparing to unpack .../08-initramfs-tools_0.142ubuntu23_all.deb ...
163s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ...
163s Preparing to unpack .../09-netplan.io_1.0-1_armhf.deb ...
163s Unpacking netplan.io (1.0-1) over (0.107.1-3) ...
163s Preparing to unpack .../10-libxmlb2_0.3.15-1build1_armhf.deb ...
163s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ...
163s Preparing to unpack .../11-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ...
163s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ...
163s Preparing to unpack .../12-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ...
163s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ...
163s Preparing to unpack .../13-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ...
163s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ...
163s Preparing to unpack .../14-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ...
163s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ...
163s Preparing to unpack .../15-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ...
163s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ...
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163s Removing libnetplan0:armhf (0.107.1-3) ...
163s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested:
163s  libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0).
163s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
163s  libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56).
163s  libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3).
163s  libjcat1:armhf depends on libglib2.0-0 (>= 2.75.3).
163s  libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3).
163s  libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0).
163s  libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0).
163s  libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-utils3:armhf depends on libglib2.0-0 (>= 2.75.3).
163s  libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2).
163s  fwupd depends on libglib2.0-0 (>= 2.79.0).
163s  bolt depends on libglib2.0-0 (>= 2.56.0).
163s 
163s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ...
164s Selecting previously unselected package libglib2.0-0t64:armhf.
164s (Reading database ... 
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164s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ...
164s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
164s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm'
164s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
164s Preparing to unpack .../libjcat1_0.2.0-2build2_armhf.deb ...
164s Unpacking libjcat1:armhf (0.2.0-2build2) over (0.2.0-2) ...
186s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested:
186s  fwupd depends on libarchive13 (>= 3.2.1).
186s 
186s (Reading database ... 
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186s Removing libarchive13:armhf (3.7.2-1ubuntu2) ...
186s Selecting previously unselected package libarchive13t64:armhf.
186s (Reading database ... 
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186s Preparing to unpack .../00-libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ...
186s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
186s Preparing to unpack .../01-fwupd_1.9.15-2_armhf.deb ...
186s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ...
187s Preparing to unpack .../02-ubuntu-pro-client-l10n_31.2.2_armhf.deb ...
187s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ...
187s Preparing to unpack .../03-ubuntu-pro-client_31.2.2_armhf.deb ...
187s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ...
187s Preparing to unpack .../04-python3.11_3.11.8-1build4_armhf.deb ...
187s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ...
187s Preparing to unpack .../05-python3.11-minimal_3.11.8-1build4_armhf.deb ...
187s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ...
188s Preparing to unpack .../06-libpython3.11-minimal_3.11.8-1build4_armhf.deb ...
188s Unpacking libpython3.11-minimal:armhf (3.11.8-1build4) over (3.11.8-1) ...
188s Preparing to unpack .../07-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
188s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
188s Preparing to unpack .../08-libtext-iconv-perl_1.7-8build2_armhf.deb ...
188s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ...
188s Preparing to unpack .../09-libtext-charwidth-perl_0.04-11build2_armhf.deb ...
188s Unpacking libtext-charwidth-perl:armhf (0.04-11build2) over (0.04-11build1) ...
188s Preparing to unpack .../10-perl-base_5.38.2-3.2_armhf.deb ...
188s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ...
189s Setting up perl-base (5.38.2-3.2) ...
189s (Reading database ... 
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189s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_armhf.deb ...
189s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ...
189s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ...
189s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
190s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_armhf.deb ...
190s Unpacking python3-gdbm:armhf (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
190s Preparing to unpack .../man-db_2.12.0-3build4_armhf.deb ...
190s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ...
190s dpkg: libgdbm-compat4:armhf: dependency problems, but removing anyway as you requested:
190s  libperl5.38:armhf depends on libgdbm-compat4 (>= 1.18-3).
190s 
190s (Reading database ... 
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190s Removing libgdbm-compat4:armhf (1.23-5) ...
190s dpkg: libgdbm6:armhf: dependency problems, but removing anyway as you requested:
190s  libperl5.38:armhf depends on libgdbm6 (>= 1.21).
190s 
190s Removing libgdbm6:armhf (1.23-5) ...
190s Selecting previously unselected package libgdbm6t64:armhf.
190s (Reading database ... 
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190s Preparing to unpack .../libgdbm6t64_1.23-5.1_armhf.deb ...
190s Unpacking libgdbm6t64:armhf (1.23-5.1) ...
190s Selecting previously unselected package libgdbm-compat4t64:armhf.
190s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ...
190s Unpacking libgdbm-compat4t64:armhf (1.23-5.1) ...
191s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested:
191s  perl depends on libperl5.38 (= 5.38.2-3).
191s 
191s (Reading database ... 
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191s Removing libperl5.38:armhf (5.38.2-3) ...
191s Selecting previously unselected package libperl5.38t64:armhf.
191s (Reading database ... 
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191s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ...
191s Unpacking libperl5.38t64:armhf (5.38.2-3.2) ...
191s Preparing to unpack .../perl_5.38.2-3.2_armhf.deb ...
191s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ...
191s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested:
191s  libpython3.11-stdlib:armhf depends on libdb5.3.
191s  libpam-modules:armhf depends on libdb5.3.
191s  iproute2 depends on libdb5.3.
191s  apt-utils depends on libdb5.3.
191s 
191s (Reading database ... 
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191s Removing libdb5.3:armhf (5.3.28+dfsg2-4) ...
192s Selecting previously unselected package libdb5.3t64:armhf.
192s (Reading database ... 
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192s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ...
192s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
192s Preparing to unpack .../libpython3.11-stdlib_3.11.8-1build4_armhf.deb ...
192s Unpacking libpython3.11-stdlib:armhf (3.11.8-1build4) over (3.11.8-1) ...
192s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ...
192s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
192s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested:
192s  gpgv depends on libnpth0 (>= 0.90).
192s  gpgsm depends on libnpth0 (>= 0.90).
192s  gpg-agent depends on libnpth0 (>= 0.90).
192s  gpg depends on libnpth0 (>= 0.90).
192s  dirmngr depends on libnpth0 (>= 0.90).
192s 
192s (Reading database ... 
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192s Removing libnpth0:armhf (1.6-3build2) ...
192s Selecting previously unselected package libnpth0t64:armhf.
192s (Reading database ... 
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192s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ...
192s Unpacking libnpth0t64:armhf (1.6-3.1) ...
192s Setting up libnpth0t64:armhf (1.6-3.1) ...
192s (Reading database ... 
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192s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ...
192s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
193s Setting up gpgv (2.4.4-2ubuntu15) ...
193s (Reading database ... 
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193s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ...
193s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
193s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ...
193s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
193s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ...
193s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
193s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ...
193s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
193s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ...
193s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
193s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested:
193s  gpgconf depends on libreadline8 (>= 6.0).
193s  gawk depends on libreadline8 (>= 6.0).
193s  fdisk depends on libreadline8 (>= 6.0).
193s 
193s (Reading database ... 
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193s Removing libreadline8:armhf (8.2-3) ...
193s Selecting previously unselected package libreadline8t64:armhf.
193s (Reading database ... 
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193s Preparing to unpack .../libreadline8t64_8.2-4_armhf.deb ...
193s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
193s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
193s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
193s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
193s Unpacking libreadline8t64:armhf (8.2-4) ...
193s Setting up libreadline8t64:armhf (8.2-4) ...
193s (Reading database ... 
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193s Preparing to unpack .../0-gawk_1%3a5.2.1-2build2_armhf.deb ...
193s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ...
193s Preparing to unpack .../1-fdisk_2.39.3-9ubuntu2_armhf.deb ...
193s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
194s Preparing to unpack .../2-gpgconf_2.4.4-2ubuntu15_armhf.deb ...
194s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
194s Preparing to unpack .../3-dirmngr_2.4.4-2ubuntu15_armhf.deb ...
194s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
194s Preparing to unpack .../4-gnupg_2.4.4-2ubuntu15_all.deb ...
194s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
194s Preparing to unpack .../5-python3-apt_2.7.7_armhf.deb ...
194s Unpacking python3-apt (2.7.7) over (2.7.6) ...
194s Preparing to unpack .../6-apt-utils_2.7.14_armhf.deb ...
194s Unpacking apt-utils (2.7.14) over (2.7.12) ...
194s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested:
194s  apt depends on libapt-pkg6.0 (>= 2.7.12).
194s 
194s (Reading database ... 
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194s Removing libapt-pkg6.0:armhf (2.7.12) ...
194s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested:
194s  libhogweed6:armhf depends on libnettle8.
194s  libgnutls30:armhf depends on libnettle8 (>= 3.9~).
194s  libcurl3-gnutls:armhf depends on libnettle8.
194s 
194s Removing libnettle8:armhf (3.9.1-2) ...
194s Selecting previously unselected package libapt-pkg6.0t64:armhf.
194s (Reading database ... 
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194s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ...
194s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ...
194s Setting up libapt-pkg6.0t64:armhf (2.7.14) ...
195s Selecting previously unselected package libnettle8t64:armhf.
195s (Reading database ... 
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195s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ...
195s Unpacking libnettle8t64:armhf (3.9.1-2.2) ...
195s Setting up libnettle8t64:armhf (3.9.1-2.2) ...
195s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested:
195s  libgnutls30:armhf depends on libhogweed6 (>= 3.6).
195s 
195s (Reading database ... 
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195s Removing libhogweed6:armhf (3.9.1-2) ...
195s Selecting previously unselected package libhogweed6t64:armhf.
195s (Reading database ... 
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195s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ...
195s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ...
195s Setting up libhogweed6t64:armhf (3.9.1-2.2) ...
195s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested:
195s  libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2).
195s  apt depends on libgnutls30 (>= 3.8.1).
195s 
195s (Reading database ... 
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195s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ...
195s Selecting previously unselected package libgnutls30t64:armhf.
195s (Reading database ... 
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195s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ...
195s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
195s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
195s (Reading database ... 
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195s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ...
195s Unpacking apt (2.7.14) over (2.7.12) ...
196s Setting up apt (2.7.14) ...
197s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested:
197s  libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0).
197s 
197s (Reading database ... 
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197s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ...
197s Selecting previously unselected package libcurl3t64-gnutls:armhf.
197s (Reading database ... 
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197s Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu8_armhf.deb ...
197s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ...
197s Preparing to unpack .../libfwupd2_1.9.15-2_armhf.deb ...
197s Unpacking libfwupd2:armhf (1.9.15-2) over (1.9.14-1) ...
197s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested:
197s  wget depends on libpsl5 (>= 0.16.0).
197s  libcurl4:armhf depends on libpsl5 (>= 0.16.0).
197s 
197s (Reading database ... 
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197s Removing libpsl5:armhf (0.21.2-1build1) ...
197s Selecting previously unselected package libpsl5t64:armhf.
197s (Reading database ... 
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197s Preparing to unpack .../libpsl5t64_0.21.2-1.1_armhf.deb ...
197s Unpacking libpsl5t64:armhf (0.21.2-1.1) ...
197s Preparing to unpack .../wget_1.21.4-1ubuntu2_armhf.deb ...
197s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ...
197s Preparing to unpack .../tnftp_20230507-2build1_armhf.deb ...
197s Unpacking tnftp (20230507-2build1) over (20230507-2) ...
197s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested:
197s  tcpdump depends on libpcap0.8 (>= 1.9.1).
197s 
197s (Reading database ... 
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198s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ...
198s Selecting previously unselected package libpcap0.8t64:armhf.
198s (Reading database ... 
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198s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu2_armhf.deb ...
198s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ...
198s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ...
198s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ...
198s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ...
198s Unpacking libsystemd-shared:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
198s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ...
198s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
198s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ...
198s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ...
198s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ...
198s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ...
198s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ...
198s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ...
198s Preparing to unpack .../07-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
198s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
199s Preparing to unpack .../08-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ...
199s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
199s Preparing to unpack .../09-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
219s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
219s Selecting previously unselected package linux-headers-6.8.0-20.
220s Preparing to unpack .../10-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ...
220s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ...
228s Selecting previously unselected package linux-headers-6.8.0-20-generic.
228s Preparing to unpack .../11-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ...
228s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
232s Preparing to unpack .../12-linux-headers-generic_6.8.0-20.20+1_armhf.deb ...
232s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
232s (Reading database ... 
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232s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ...
233s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested:
233s  systemd depends on libssl3 (>= 3.0.0).
233s  libssh-4:armhf depends on libssl3 (>= 3.0.0).
233s  libsasl2-modules:armhf depends on libssl3 (>= 3.0.0).
233s  libsasl2-2:armhf depends on libssl3 (>= 3.0.0).
233s  libnvme1 depends on libssl3 (>= 3.0.0).
233s  libkrb5-3:armhf depends on libssl3 (>= 3.0.0).
233s  libkmod2:armhf depends on libssl3 (>= 3.0.0).
233s  libfido2-1:armhf depends on libssl3 (>= 3.0.0).
233s  libcurl4:armhf depends on libssl3 (>= 3.0.0).
233s  libcryptsetup12:armhf depends on libssl3 (>= 3.0.0).
233s  kmod depends on libssl3 (>= 3.0.0).
233s  dhcpcd-base depends on libssl3 (>= 3.0.0).
233s  bind9-libs:armhf depends on libssl3 (>= 3.0.0).
233s 
233s Removing libssl3:armhf (3.0.10-1ubuntu4) ...
233s Selecting previously unselected package libssl3t64:armhf.
233s (Reading database ... 
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233s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ...
233s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ...
233s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ...
233s (Reading database ... 
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233s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ...
233s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
234s Setting up libudev1:armhf (255.4-1ubuntu5) ...
234s (Reading database ... 
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234s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ...
234s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
235s Preparing to unpack .../udev_255.4-1ubuntu5_armhf.deb ...
235s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
235s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ...
235s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
235s Setting up libsystemd0:armhf (255.4-1ubuntu5) ...
235s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ...
235s Setting up systemd-dev (255.4-1ubuntu5) ...
235s Setting up systemd (255.4-1ubuntu5) ...
260s (Reading database ... 
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260s Preparing to unpack .../systemd-sysv_255.4-1ubuntu5_armhf.deb ...
260s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
260s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ...
260s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
260s Preparing to unpack .../libpam-systemd_255.4-1ubuntu5_armhf.deb ...
260s Unpacking libpam-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
260s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_armhf.deb ...
260s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
260s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ...
260s pam_namespace.service is a disabled or a static unit not running, not starting it.
261s (Reading database ... 
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261s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_armhf.deb ...
261s Unpacking libpam-modules:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
261s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ...
261s Installing new version of config file /etc/security/namespace.init ...
261s (Reading database ... 
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261s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ...
261s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
261s Setting up libpam-runtime (1.5.3-5ubuntu3) ...
262s (Reading database ... 
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262s Preparing to unpack .../0-dbus-user-session_1.14.10-4ubuntu2_armhf.deb ...
262s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
262s Preparing to unpack .../1-libapparmor1_4.0.0-beta3-0ubuntu2_armhf.deb ...
262s Unpacking libapparmor1:armhf (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
262s Preparing to unpack .../2-dbus-bin_1.14.10-4ubuntu2_armhf.deb ...
262s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
262s Preparing to unpack .../3-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ...
262s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
262s Preparing to unpack .../4-dbus_1.14.10-4ubuntu2_armhf.deb ...
262s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
262s Preparing to unpack .../5-dbus-daemon_1.14.10-4ubuntu2_armhf.deb ...
262s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
262s Preparing to unpack .../6-libdbus-1-3_1.14.10-4ubuntu2_armhf.deb ...
262s Unpacking libdbus-1-3:armhf (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
262s Preparing to unpack .../7-kmod_31+20240202-2ubuntu4_armhf.deb ...
262s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ...
263s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty
263s Preparing to unpack .../8-libkmod2_31+20240202-2ubuntu4_armhf.deb ...
263s Unpacking libkmod2:armhf (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ...
263s Preparing to unpack .../9-libmount1_2.39.3-9ubuntu2_armhf.deb ...
263s Unpacking libmount1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
263s Setting up libmount1:armhf (2.39.3-9ubuntu2) ...
263s (Reading database ... 
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263s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_armhf.deb ...
263s Unpacking libseccomp2:armhf (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ...
263s Setting up libseccomp2:armhf (2.5.5-1ubuntu2) ...
263s (Reading database ... 
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263s Preparing to unpack .../libuuid1_2.39.3-9ubuntu2_armhf.deb ...
263s Unpacking libuuid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
263s Setting up libuuid1:armhf (2.39.3-9ubuntu2) ...
263s (Reading database ... 
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263s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ...
263s Unpacking libcryptsetup12:armhf (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
263s Preparing to unpack .../1-libfdisk1_2.39.3-9ubuntu2_armhf.deb ...
263s Unpacking libfdisk1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
264s Preparing to unpack .../2-mount_2.39.3-9ubuntu2_armhf.deb ...
264s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
264s Preparing to unpack .../3-libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_armhf.deb ...
264s Unpacking libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
264s Selecting previously unselected package libparted2t64:armhf.
264s Preparing to unpack .../4-libparted2t64_3.6-3.1build2_armhf.deb ...
264s Unpacking libparted2t64:armhf (3.6-3.1build2) ...
264s Preparing to unpack .../5-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ...
264s Unpacking libsqlite3-0:armhf (3.45.1-1ubuntu1) over (3.45.1-1) ...
264s Preparing to unpack .../6-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ...
264s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ...
264s Preparing to unpack .../7-libsmartcols1_2.39.3-9ubuntu2_armhf.deb ...
264s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
264s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ...
264s (Reading database ... 
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264s Preparing to unpack .../0-readline-common_8.2-4_all.deb ...
264s Unpacking readline-common (8.2-4) over (8.2-3) ...
264s Preparing to unpack .../1-python3-yaml_6.0.1-2build1_armhf.deb ...
265s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ...
265s Preparing to unpack .../2-python-apt-common_2.7.7_all.deb ...
265s Unpacking python-apt-common (2.7.7) over (2.7.6) ...
265s Preparing to unpack .../3-python3-setuptools_68.1.2-2ubuntu1_all.deb ...
265s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ...
265s Preparing to unpack .../4-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ...
266s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ...
266s Preparing to unpack .../5-dpkg_1.22.6ubuntu4_armhf.deb ...
266s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
266s Setting up dpkg (1.22.6ubuntu4) ...
267s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ...
267s Setting up libexpat1:armhf (2.6.1-2) ...
267s Setting up python3.12-minimal (3.12.2-4build3) ...
269s (Reading database ... 
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269s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ...
269s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
269s Setting up python3-minimal (3.12.2-0ubuntu1) ...
270s (Reading database ... 
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270s Preparing to unpack .../00-python3_3.12.2-0ubuntu1_armhf.deb ...
270s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
270s Preparing to unpack .../01-libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ...
270s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
270s Preparing to unpack .../02-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ...
270s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
270s Preparing to unpack .../03-groff-base_1.23.0-3build1_armhf.deb ...
270s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ...
270s Preparing to unpack .../04-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
270s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
270s Preparing to unpack .../05-libblockdev-utils3_3.1.0-1build1_armhf.deb ...
270s Unpacking libblockdev-utils3:armhf (3.1.0-1build1) over (3.1.0-1) ...
271s Preparing to unpack .../06-libblockdev-crypto3_3.1.0-1build1_armhf.deb ...
271s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ...
271s Preparing to unpack .../07-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
271s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
271s Preparing to unpack .../08-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ...
271s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ...
271s Preparing to unpack .../09-eject_2.39.3-9ubuntu2_armhf.deb ...
271s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
271s Preparing to unpack .../10-libbpf1_1%3a1.3.0-2build1_armhf.deb ...
271s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ...
271s Preparing to unpack .../11-iproute2_6.1.0-1ubuntu5_armhf.deb ...
271s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ...
271s (Reading database ... 
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271s Removing libelf1:armhf (0.190-1) ...
271s Selecting previously unselected package libelf1t64:armhf.
272s (Reading database ... 
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272s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ...
272s Unpacking libelf1t64:armhf (0.190-1.1build2) ...
272s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
272s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
272s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ...
272s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ...
272s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ...
272s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ...
272s (Reading database ... 
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272s Removing libtirpc3:armhf (1.3.4+ds-1build1) ...
272s (Reading database ... 
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272s Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-6ubuntu1_armhf.deb ...
272s Unpacking libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
272s Preparing to unpack .../1-libkrb5-3_1.20.1-6ubuntu1_armhf.deb ...
272s Unpacking libkrb5-3:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
272s Preparing to unpack .../2-libkrb5support0_1.20.1-6ubuntu1_armhf.deb ...
272s Unpacking libkrb5support0:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
272s Preparing to unpack .../3-libk5crypto3_1.20.1-6ubuntu1_armhf.deb ...
272s Unpacking libk5crypto3:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
273s Preparing to unpack .../4-libcom-err2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
273s Unpacking libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
273s Selecting previously unselected package libtirpc3t64:armhf.
273s Preparing to unpack .../5-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ...
273s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64'
273s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
273s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ...
273s Preparing to unpack .../6-libc-bin_2.39-0ubuntu6_armhf.deb ...
273s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
273s Setting up libc-bin (2.39-0ubuntu6) ...
273s (Reading database ... 
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273s Preparing to unpack .../0-locales_2.39-0ubuntu6_all.deb ...
273s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
274s Preparing to unpack .../1-libproc2-0_2%3a4.0.4-4ubuntu2_armhf.deb ...
274s Unpacking libproc2-0:armhf (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ...
274s Preparing to unpack .../2-procps_2%3a4.0.4-4ubuntu2_armhf.deb ...
274s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ...
275s Preparing to unpack .../3-vim-tiny_2%3a9.1.0016-1ubuntu6_armhf.deb ...
275s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ...
275s Preparing to unpack .../4-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ...
275s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ...
275s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ...
275s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
275s Preparing to unpack .../6-libblockdev-fs3_3.1.0-1build1_armhf.deb ...
275s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ...
275s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested:
275s  btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27).
275s 
275s (Reading database ... 
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275s Removing libreiserfscore0 (1:3.6.27-7) ...
275s Selecting previously unselected package libreiserfscore0t64.
275s (Reading database ... 
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275s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ...
275s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ...
275s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ...
275s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ...
275s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested:
275s  e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1).
275s 
276s (Reading database ... 
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276s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ...
276s Selecting previously unselected package libext2fs2t64:armhf.
276s (Reading database ... 
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276s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
276s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64'
276s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
276s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64'
276s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
276s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
276s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ...
276s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
276s (Reading database ... 
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276s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
276s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
276s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ...
276s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ...
276s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ...
276s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ...
276s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ...
276s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ...
276s (Reading database ... 
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276s Removing libnvme1 (1.8-2) ...
277s Selecting previously unselected package libnvme1t64.
277s (Reading database ... 
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277s Preparing to unpack .../00-libnvme1t64_1.8-3_armhf.deb ...
277s Unpacking libnvme1t64 (1.8-3) ...
277s Preparing to unpack .../01-libblockdev-part3_3.1.0-1build1_armhf.deb ...
277s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ...
277s Preparing to unpack .../02-libblockdev-swap3_3.1.0-1build1_armhf.deb ...
277s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ...
277s Preparing to unpack .../03-libblockdev3_3.1.0-1build1_armhf.deb ...
277s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ...
277s Preparing to unpack .../04-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ...
277s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ...
277s Preparing to unpack .../05-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ...
277s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ...
277s Preparing to unpack .../06-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ...
277s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ...
277s Preparing to unpack .../07-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ...
277s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ...
277s Preparing to unpack .../08-libjson-glib-1.0-common_1.8.0-2build1_all.deb ...
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277s Preparing to unpack .../09-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ...
277s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ...
278s Preparing to unpack .../10-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ...
278s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ...
278s Preparing to unpack .../11-libgusb2_0.4.8-1build1_armhf.deb ...
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278s Preparing to unpack .../12-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ...
278s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ...
278s Preparing to unpack .../13-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ...
278s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ...
278s Preparing to unpack .../14-libbrotli1_1.1.0-2build1_armhf.deb ...
278s Unpacking libbrotli1:armhf (1.1.0-2build1) over (1.1.0-2) ...
278s Preparing to unpack .../15-libnghttp2-14_1.59.0-1build1_armhf.deb ...
278s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ...
278s Preparing to unpack .../16-libssh-4_0.10.6-2build1_armhf.deb ...
278s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ...
278s Preparing to unpack .../17-libibverbs1_50.0-2build1_armhf.deb ...
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278s Preparing to unpack .../18-libfido2-1_1.14.0-1build1_armhf.deb ...
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278s Preparing to unpack .../19-coreutils_9.4-3ubuntu3_armhf.deb ...
278s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ...
279s Setting up coreutils (9.4-3ubuntu3) ...
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279s Preparing to unpack .../debianutils_5.17_armhf.deb ...
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279s Setting up debianutils (5.17) ...
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279s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ...
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280s Setting up util-linux (2.39.3-9ubuntu2) ...
281s fstrim.service is a disabled or a static unit not running, not starting it.
281s (Reading database ... 
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281s Removing libatm1:armhf (1:2.5.1-5) ...
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281s Preparing to unpack .../curl_8.5.0-2ubuntu8_armhf.deb ...
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282s Removing libcurl4:armhf (8.5.0-2ubuntu2) ...
282s Selecting previously unselected package libcurl4t64:armhf.
282s (Reading database ... 
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282s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_armhf.deb ...
282s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu8) ...
282s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ...
282s Unpacking file (1:5.45-3) over (1:5.45-2) ...
282s (Reading database ... 
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282s Removing libmagic1:armhf (1:5.45-2) ...
282s (Reading database ... 
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282s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ...
282s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ...
282s Selecting previously unselected package libmagic1t64:armhf.
282s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ...
282s Unpacking libmagic1t64:armhf (1:5.45-3) ...
282s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ...
282s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
283s (Reading database ... 
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283s Removing libpng16-16:armhf (1.6.43-1) ...
283s Selecting previously unselected package libpng16-16t64:armhf.
283s (Reading database ... 
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283s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ...
283s Unpacking libpng16-16t64:armhf (1.6.43-3) ...
283s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ...
283s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
283s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ...
283s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
283s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ...
283s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
283s (Reading database ... 
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283s Removing libuv1:armhf (1.48.0-1) ...
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283s (Reading database ... 
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283s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ...
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283s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ...
283s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
284s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ...
284s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ...
284s Setting up libdebconfclient0:armhf (0.271ubuntu2) ...
284s (Reading database ... 
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284s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ...
284s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ...
284s Setting up libsemanage-common (3.5-1build4) ...
284s (Reading database ... 
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284s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ...
284s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ...
284s Setting up libsemanage2:armhf (3.5-1build4) ...
284s (Reading database ... 
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284s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ...
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284s Setting up install-info (7.1-3build1) ...
284s (Reading database ... 
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284s Preparing to unpack .../00-gcc-13-base_13.2.0-21ubuntu1_armhf.deb ...
284s Unpacking gcc-13-base:armhf (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ...
285s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
285s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
285s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ...
285s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
285s Preparing to unpack .../03-krb5-locales_1.20.1-6ubuntu1_all.deb ...
285s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
285s Preparing to unpack .../04-libbsd0_0.12.1-1_armhf.deb ...
285s Unpacking libbsd0:armhf (0.12.1-1) over (0.11.8-1) ...
285s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
285s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
285s Preparing to unpack .../06-libslang2_2.3.3-3build1_armhf.deb ...
285s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ...
285s Preparing to unpack .../07-rsyslog_8.2312.0-3ubuntu7_armhf.deb ...
285s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ...
285s Selecting previously unselected package xdg-user-dirs.
285s Preparing to unpack .../08-xdg-user-dirs_0.18-1_armhf.deb ...
285s Unpacking xdg-user-dirs (0.18-1) ...
285s Preparing to unpack .../09-xxd_2%3a9.1.0016-1ubuntu6_armhf.deb ...
285s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ...
285s Preparing to unpack .../10-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ...
287s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
287s Preparing to unpack .../11-ftp_20230507-2build1_all.deb ...
287s Unpacking ftp (20230507-2build1) over (20230507-2) ...
287s Preparing to unpack .../12-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ...
287s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ...
288s Preparing to unpack .../13-info_7.1-3build1_armhf.deb ...
288s Unpacking info (7.1-3build1) over (7.1-3) ...
288s Preparing to unpack .../14-libxmuu1_2%3a1.1.3-3build1_armhf.deb ...
288s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ...
288s Preparing to unpack .../15-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ...
288s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ...
288s Preparing to unpack .../16-mtr-tiny_0.95-1.1build1_armhf.deb ...
288s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ...
288s Preparing to unpack .../17-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ...
288s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
288s Preparing to unpack .../18-plymouth_24.004.60-1ubuntu6_armhf.deb ...
288s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
288s Preparing to unpack .../19-psmisc_23.7-1_armhf.deb ...
288s Unpacking psmisc (23.7-1) over (23.6-2) ...
288s Preparing to unpack .../20-telnet_0.17+2.5-3ubuntu3_all.deb ...
288s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ...
288s Preparing to unpack .../21-xz-utils_5.6.0-0.2_armhf.deb ...
288s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ...
289s Preparing to unpack .../22-ubuntu-standard_1.536build1_armhf.deb ...
289s Unpacking ubuntu-standard (1.536build1) over (1.536) ...
289s Preparing to unpack .../23-usb.ids_2024.03.18-1_all.deb ...
289s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ...
289s Preparing to unpack .../24-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ...
289s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
289s Preparing to unpack .../25-libctf0_2.42-4ubuntu1_armhf.deb ...
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289s Preparing to unpack .../26-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ...
289s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
289s Preparing to unpack .../27-libbinutils_2.42-4ubuntu1_armhf.deb ...
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289s Preparing to unpack .../28-binutils_2.42-4ubuntu1_armhf.deb ...
289s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
289s Preparing to unpack .../29-binutils-common_2.42-4ubuntu1_armhf.deb ...
289s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
289s Preparing to unpack .../30-libsframe1_2.42-4ubuntu1_armhf.deb ...
289s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
289s Preparing to unpack .../31-bolt_0.9.6-2build1_armhf.deb ...
289s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ...
289s Preparing to unpack .../32-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ...
289s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
290s Preparing to unpack .../33-dpkg-dev_1.22.6ubuntu4_all.deb ...
290s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
290s Preparing to unpack .../34-libdpkg-perl_1.22.6ubuntu4_all.deb ...
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300s Preparing to unpack .../35-fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
300s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
300s Preparing to unpack .../36-gnupg-l10n_2.4.4-2ubuntu15_all.deb ...
300s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
301s Preparing to unpack .../37-ibverbs-providers_50.0-2build1_armhf.deb ...
301s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ...
301s Preparing to unpack .../38-jq_1.7.1-3_armhf.deb ...
301s Unpacking jq (1.7.1-3) over (1.7.1-2) ...
301s Preparing to unpack .../39-libjq1_1.7.1-3_armhf.deb ...
301s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ...
301s Selecting previously unselected package libatm1t64:armhf.
301s Preparing to unpack .../40-libatm1t64_1%3a2.5.1-5.1_armhf.deb ...
301s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ...
301s Preparing to unpack .../41-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ...
301s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ...
301s Preparing to unpack .../42-libftdi1-2_1.5-6build4_armhf.deb ...
301s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ...
301s Preparing to unpack .../43-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ...
301s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
301s Preparing to unpack .../44-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
301s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
301s Preparing to unpack .../45-python3-distutils_3.12.2-3ubuntu1.1_all.deb ...
301s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
301s Preparing to unpack .../46-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ...
302s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
302s Preparing to unpack .../47-python3-markupsafe_2.1.5-1build1_armhf.deb ...
302s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
302s Preparing to unpack .../48-python3-pyrsistent_0.20.0-1build1_armhf.deb ...
302s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ...
302s Preparing to unpack .../49-python3-typing-extensions_4.10.0-1_all.deb ...
302s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ...
303s Preparing to unpack .../50-cloud-init_24.1.2-0ubuntu1_all.deb ...
303s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
304s Preparing to unpack .../51-kpartx_0.9.4-5ubuntu6_armhf.deb ...
304s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ...
304s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
304s Setting up pinentry-curses (1.2.1-3ubuntu4) ...
304s Setting up motd-news-config (13ubuntu8) ...
304s Setting up libtext-iconv-perl:armhf (1.7-8build2) ...
304s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ...
304s Setting up libibverbs1:armhf (50.0-2build1) ...
304s Setting up systemd-sysv (255.4-1ubuntu5) ...
304s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ...
304s Setting up libatm1t64:armhf (1:2.5.1-5.1) ...
304s Setting up libgdbm6t64:armhf (1.23-5.1) ...
304s Setting up bsdextrautils (2.39.3-9ubuntu2) ...
304s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ...
304s Setting up xdg-user-dirs (0.18-1) ...
304s Setting up ibverbs-providers:armhf (50.0-2build1) ...
304s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ...
304s Setting up libmagic-mgc (1:5.45-3) ...
304s Setting up gawk (1:5.2.1-2build2) ...
304s Setting up psmisc (23.7-1) ...
304s Setting up libjq1:armhf (1.7.1-3) ...
304s Setting up libtirpc-common (1.3.4+ds-1.1) ...
304s Setting up libbrotli1:armhf (1.1.0-2build1) ...
304s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ...
304s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ...
304s Setting up libuv1t64:armhf (1.48.0-1.1) ...
304s Setting up libmagic1t64:armhf (1:5.45-3) ...
304s Setting up rsyslog (8.2312.0-3ubuntu7) ...
304s info: The user `syslog' is already a member of `adm'.
305s apparmor_parser: Unable to replace "rsyslogd".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
305s 
306s Setting up binutils-common:armhf (2.42-4ubuntu1) ...
306s Setting up libpsl5t64:armhf (0.21.2-1.1) ...
306s Setting up libnghttp2-14:armhf (1.59.0-1build1) ...
306s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ...
306s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ...
306s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ...
306s Setting up krb5-locales (1.20.1-6ubuntu1) ...
306s Setting up file (1:5.45-3) ...
306s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ...
306s Setting up locales (2.39-0ubuntu6) ...
308s Generating locales (this might take a while)...
313s   en_US.UTF-8... done
313s Generation complete.
313s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ...
313s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ...
313s Setting up xxd (2:9.1.0016-1ubuntu6) ...
313s Setting up libsframe1:armhf (2.42-4ubuntu1) ...
313s Setting up libelf1t64:armhf (0.190-1.1build2) ...
313s Setting up libkrb5support0:armhf (1.20.1-6ubuntu1) ...
313s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
313s Setting up eject (2.39.3-9ubuntu2) ...
313s Setting up apparmor (4.0.0-beta3-0ubuntu2) ...
313s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
313s Installing new version of config file /etc/apparmor.d/abstractions/crypto ...
313s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ...
314s Installing new version of config file /etc/apparmor.d/abstractions/openssl ...
314s Installing new version of config file /etc/apparmor.d/code ...
314s Installing new version of config file /etc/apparmor.d/firefox ...
314s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
314s 
314s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
314s 
314s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
314s 
316s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory
316s Reloading AppArmor profiles 
316s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Unable to replace "busybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "nautilus".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "toybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
316s 
316s Error: At least one profile failed to load
316s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
316s No schema files found: doing nothing.
316s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
316s Setting up vim-common (2:9.1.0016-1ubuntu6) ...
340s Setting up gcc-13-base:armhf (13.2.0-21ubuntu1) ...
340s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ...
340s Setting up libslang2:armhf (2.3.3-3build1) ...
340s Setting up libnvme1t64 (1.8-3) ...
340s Setting up mtr-tiny (0.95-1.1build1) ...
340s Setting up gnupg-l10n (2.4.4-2ubuntu15) ...
340s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ...
340s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ...
340s Setting up xz-utils (5.6.0-0.2) ...
340s Setting up perl-modules-5.38 (5.38.2-3.2) ...
340s Setting up libproc2-0:armhf (2:4.0.4-4ubuntu2) ...
340s Setting up libpng16-16t64:armhf (1.6.43-3) ...
340s Setting up systemd-timesyncd (255.4-1ubuntu5) ...
341s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ...
341s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ...
341s Setting up usb.ids (2024.03.18-1) ...
341s Setting up sudo (1.9.15p5-3ubuntu3) ...
341s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ...
341s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ...
341s Setting up libk5crypto3:armhf (1.20.1-6ubuntu1) ...
341s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ...
341s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ...
341s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
341s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ...
341s Setting up python-apt-common (2.7.7) ...
341s Setting up mount (2.39.3-9ubuntu2) ...
341s Setting up dmsetup (2:1.02.185-3ubuntu2) ...
341s Setting up uuid-runtime (2.39.3-9ubuntu2) ...
342s uuidd.service is a disabled or a static unit not running, not starting it.
343s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ...
343s Setting up groff-base (1.23.0-3build1) ...
343s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ...
343s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ...
343s Setting up jq (1.7.1-3) ...
343s Setting up procps (2:4.0.4-4ubuntu2) ...
343s Setting up gpgconf (2.4.4-2ubuntu15) ...
343s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ...
343s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ...
343s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ...
343s Setting up libjson-glib-1.0-common (1.8.0-2build1) ...
343s Setting up libkrb5-3:armhf (1.20.1-6ubuntu1) ...
343s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ...
343s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ...
343s Setting up libperl5.38t64:armhf (5.38.2-3.2) ...
343s Setting up tnftp (20230507-2build1) ...
343s Setting up libbinutils:armhf (2.42-4ubuntu1) ...
343s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ...
343s Setting up libfido2-1:armhf (1.14.0-1build1) ...
343s Setting up openssl (3.0.13-0ubuntu2) ...
343s Setting up libbsd0:armhf (0.12.1-1) ...
343s Setting up readline-common (8.2-4) ...
343s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ...
343s Setting up libxmuu1:armhf (2:1.1.3-3build1) ...
343s Setting up dbus-bin (1.14.10-4ubuntu2) ...
343s Setting up info (7.1-3build1) ...
343s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ...
343s Setting up gpg (2.4.4-2ubuntu15) ...
343s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ...
343s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ...
343s Setting up libbpf1:armhf (1:1.3.0-2build1) ...
343s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ...
343s Setting up rsync (3.2.7-1build1) ...
345s rsync.service is a disabled or a static unit not running, not starting it.
345s Setting up libudisks2-0:armhf (2.10.1-6) ...
345s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ...
345s Setting up bolt (0.9.6-2build1) ...
345s bolt.service is a disabled or a static unit not running, not starting it.
345s Setting up gnupg-utils (2.4.4-2ubuntu15) ...
345s Setting up initramfs-tools-bin (0.142ubuntu23) ...
345s Setting up libctf0:armhf (2.42-4ubuntu1) ...
345s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ...
345s Setting up python3.11-minimal (3.11.8-1build4) ...
347s Setting up tcpdump (4.99.4-3ubuntu2) ...
348s apparmor_parser: Unable to replace "tcpdump".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
348s 
348s Setting up apt-utils (2.7.14) ...
348s Setting up gpg-agent (2.4.4-2ubuntu15) ...
349s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ...
349s Setting up wget (1.21.4-1ubuntu2) ...
349s Setting up libxmlb2:armhf (0.3.15-1build1) ...
349s Setting up btrfs-progs (6.6.3-1.1build1) ...
349s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ...
349s Setting up python3.12 (3.12.2-4build3) ...
352s Setting up gpgsm (2.4.4-2ubuntu15) ...
352s Setting up inetutils-telnet (2:2.5-3ubuntu3) ...
352s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ...
352s update-initramfs: deferring update (trigger activated)
353s e2scrub_all.service is a disabled or a static unit not running, not starting it.
353s Setting up libparted2t64:armhf (3.6-3.1build2) ...
353s Setting up linux-headers-generic (6.8.0-20.20+1) ...
353s Setting up dbus-daemon (1.14.10-4ubuntu2) ...
353s Setting up libmbim-proxy (1.31.2-0ubuntu2) ...
353s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ...
353s Setting up kmod (31+20240202-2ubuntu4) ...
354s Setting up libnetplan1:armhf (1.0-1) ...
354s Setting up man-db (2.12.0-3build4) ...
354s Updating database of manual pages ...
356s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
356s 
357s man-db.service is a disabled or a static unit not running, not starting it.
357s Setting up fdisk (2.39.3-9ubuntu2) ...
357s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ...
357s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ...
357s Setting up libftdi1-2:armhf (1.5-6build4) ...
357s Setting up perl (5.38.2-3.2) ...
357s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ...
357s Setting up dbus (1.14.10-4ubuntu2) ...
357s A reboot is required to replace the running dbus-daemon.
357s Please reboot the system when convenient.
358s Setting up shared-mime-info (2.4-1build1) ...
359s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ...
359s Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) ...
359s Setting up udev (255.4-1ubuntu5) ...
360s Setting up ftp (20230507-2build1) ...
360s Setting up keyboxd (2.4.4-2ubuntu15) ...
361s Setting up libdpkg-perl (1.22.6ubuntu4) ...
361s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ...
361s Setting up libssh-4:armhf (0.10.6-2build1) ...
361s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ...
361s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ...
361s Setting up kpartx (0.9.4-5ubuntu6) ...
361s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ...
361s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ...
361s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
361s Setting up netplan-generator (1.0-1) ...
361s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
361s Setting up initramfs-tools-core (0.142ubuntu23) ...
361s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ...
361s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
361s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ...
361s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ...
361s Setting up systemd-resolved (255.4-1ubuntu5) ...
362s Setting up python3.11 (3.11.8-1build4) ...
364s Setting up telnet (0.17+2.5-3ubuntu3) ...
364s Setting up initramfs-tools (0.142ubuntu23) ...
364s update-initramfs: deferring update (trigger activated)
364s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ...
364s Setting up libcurl4t64:armhf (8.5.0-2ubuntu8) ...
364s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ...
364s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ...
364s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ...
364s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ...
364s Setting up plymouth (24.004.60-1ubuntu6) ...
365s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
365s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
365s Setting up iproute2 (6.1.0-1ubuntu5) ...
366s Setting up openssh-client (1:9.6p1-3ubuntu11) ...
366s Setting up libgusb2:armhf (0.4.8-1build1) ...
366s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ...
366s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ...
366s Setting up parted (3.6-3.1build2) ...
366s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ...
366s Setting up python3 (3.12.2-0ubuntu1) ...
366s Setting up binutils (2.42-4ubuntu1) ...
366s Setting up python3-markupsafe (2.1.5-1build1) ...
367s Setting up libblockdev3:armhf (3.1.0-1build1) ...
367s Setting up libjcat1:armhf (0.2.0-2build2) ...
367s Setting up dpkg-dev (1.22.6ubuntu4) ...
367s Setting up libblockdev-part3:armhf (3.1.0-1build1) ...
367s Setting up dirmngr (2.4.4-2ubuntu15) ...
367s Setting up dbus-user-session (1.14.10-4ubuntu2) ...
367s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ...
367s update-initramfs: deferring update (trigger activated)
367s Setting up python3-cryptography (41.0.7-4build2) ...
368s Setting up python3-gi (3.47.0-3build1) ...
368s Setting up python3-typing-extensions (4.10.0-1) ...
369s Setting up lsof (4.95.0-1build2) ...
369s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ...
369s Setting up libnsl2:armhf (1.3.0-3build2) ...
369s Setting up gnupg (2.4.4-2ubuntu15) ...
369s Setting up python3-netplan (1.0-1) ...
369s Setting up curl (8.5.0-2ubuntu8) ...
369s Setting up libvolume-key1:armhf (0.3.12-7build1) ...
369s Setting up bind9-host (1:9.18.24-0ubuntu3) ...
369s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ...
370s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
370s Setting up python3-distutils (3.12.2-3ubuntu1.1) ...
371s python3.12: can't get files for byte-compilation
371s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ...
371s Setting up python3-dbus (1.3.2-5build2) ...
371s Setting up python3-setuptools (68.1.2-2ubuntu1) ...
372s Setting up gpg-wks-client (2.4.4-2ubuntu15) ...
372s Setting up openssh-server (1:9.6p1-3ubuntu11) ...
373s Replacing config file /etc/ssh/sshd_config with new version
375s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket.

377s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ...
377s Setting up python3-gdbm:armhf (3.12.2-3ubuntu1.1) ...
377s Setting up python3-apt (2.7.7) ...
378s Setting up libfwupd2:armhf (1.9.15-2) ...
378s Setting up python3-yaml (6.0.1-2build1) ...
378s Setting up libqmi-proxy (1.35.2-0ubuntu1) ...
378s Setting up netplan.io (1.0-1) ...
378s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ...
378s Setting up ubuntu-pro-client (31.2.2) ...
378s apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
378s 
381s Setting up fwupd (1.9.15-2) ...
382s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
382s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
382s fwupd.service is a disabled or a static unit not running, not starting it.
382s Setting up ubuntu-pro-client-l10n (31.2.2) ...
382s Setting up udisks2 (2.10.1-6) ...
382s sda: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/uevent': Permission denied

382s sda1: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/sda1/uevent': Permission denied

382s sda15: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/sda15/uevent': Permission denied

382s sda2: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/sda2/uevent': Permission denied

382s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied

382s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied

382s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied

382s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied

382s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied

382s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied

382s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied

382s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied

383s Setting up cloud-init (24.1.2-0ubuntu1) ...
386s Setting up ubuntu-minimal (1.536build1) ...
386s Setting up ubuntu-standard (1.536build1) ...
386s Processing triggers for libc-bin (2.39-0ubuntu6) ...
386s Processing triggers for ufw (0.36.2-5) ...
387s Processing triggers for install-info (7.1-3build1) ...
387s Processing triggers for initramfs-tools (0.142ubuntu23) ...
390s Reading package lists...
391s Building dependency tree...
391s Reading state information...
392s The following packages will be REMOVED:
392s   linux-headers-6.8.0-11* python3-distutils* python3-lib2to3*
393s 0 upgraded, 0 newly installed, 3 to remove and 1 not upgraded.
393s After this operation, 86.5 MB disk space will be freed.
393s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 78647 files and directories currently installed.)
393s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ...
395s Removing python3-distutils (3.12.2-3ubuntu1.1) ...
395s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ...
398s autopkgtest [12:24:38]: rebooting testbed after setup commands that affected boot
459s autopkgtest [12:25:39]: testbed running kernel: Linux 5.4.0-173-generic #191-Ubuntu SMP Fri Feb 2 13:54:37 UTC 2024
484s autopkgtest [12:26:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-matrixstats
495s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-matrixstats 1.2.0-1 (dsc) [2230 B]
495s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-matrixstats 1.2.0-1 (tar) [211 kB]
495s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-matrixstats 1.2.0-1 (diff) [4752 B]
495s gpgv: Signature made Mon Jan  8 21:38:59 2024 UTC
495s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
495s gpgv:                issuer "tille@debian.org"
495s gpgv: Can't check signature: No public key
495s dpkg-source: warning: cannot verify inline signature for ./r-cran-matrixstats_1.2.0-1.dsc: no acceptable signature found
496s autopkgtest [12:26:16]: testing package r-cran-matrixstats version 1.2.0-1
498s autopkgtest [12:26:18]: build not needed
501s autopkgtest [12:26:21]: test run-unit-test: preparing testbed
511s Reading package lists...
512s Building dependency tree...
512s Reading state information...
512s Starting pkgProblemResolver with broken count: 0
513s Starting 2 pkgProblemResolver with broken count: 0
513s Done
514s The following additional packages will be installed:
514s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
514s   fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1
514s   libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3
514s   libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap
514s   libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax
514s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
514s   libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
514s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
514s   libxft2 libxrender1 libxss1 libxt6t64 node-normalize.css r-base-core
514s   r-cran-base64enc r-cran-cli r-cran-colorspace r-cran-commonmark
514s   r-cran-digest r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2
514s   r-cran-glue r-cran-gtable r-cran-highr r-cran-isoband r-cran-knitr
514s   r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-magrittr
514s   r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
514s   r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-r.cache
514s   r-cran-r.devices r-cran-r.methodss3 r-cran-r.oo r-cran-r.rsp r-cran-r.utils
514s   r-cran-r6 r-cran-rcolorbrewer r-cran-rlang r-cran-scales r-cran-tibble
514s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun
514s   r-cran-yaml tcl tcl8.6 unzip x11-common xdg-utils zip
514s Suggested packages:
514s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc tk8.6 libjs-html5shiv
514s   elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-kernsmooth
514s   r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
514s   r-cran-dplyr r-cran-png r-cran-jpeg r-cran-rmarkdown r-cran-viridis
514s   r-cran-covr r-cran-magick r-cran-sf r-cran-bit64 r-cran-dbi
514s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-stringi
514s   r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-cairo
514s   r-cran-codetools r-cran-bench r-cran-blob r-cran-brio r-cran-callr
514s   r-cran-crayon r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild
514s   r-cran-pkgload r-cran-purrr r-cran-tidyr tcl-tclreadline
514s Recommended packages:
514s   javascript-common r-recommended r-base-dev r-doc-html r-cran-callr
514s   r-cran-covr r-cran-crayon r-cran-htmltools r-cran-htmlwidgets r-cran-mockery
514s   r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
514s   r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-curl r-cran-xml2
514s   r-cran-unitizer r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj
514s   r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
514s   r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-dbi
514s   r-cran-rsqlite r-cran-waldo r-cran-testit r-cran-bslib r-cran-codetools
514s   r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png
514s   r-cran-reticulate r-cran-rgl r-cran-sass r-cran-tikzdevice r-cran-tinytex
514s   r-cran-webshot node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-rcurl
514s   r-cran-lubridate libjs-remark-slide r-cran-fs r-cran-usethis r-cran-bit64
514s   r-cran-dichromat r-cran-hms r-cran-stringi r-cran-data.table r-cran-mockr
514s   r-cran-formattable r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-mime
514s   r-cran-remotes r-cran-renv r-cran-jsonlite r-cran-runit
514s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
514s   x11-xserver-utils
515s The following NEW packages will be installed:
515s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
515s   fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax libblas3
515s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
515s   libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8
515s   libjpeg8 libjs-bootstrap libjs-highlight.js libjs-jquery
515s   libjs-jquery-datatables libjs-mathjax liblapack3 liblerc4 libpango-1.0-0
515s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
515s   libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
515s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
515s   node-normalize.css r-base-core r-cran-base64enc r-cran-cli r-cran-colorspace
515s   r-cran-commonmark r-cran-digest r-cran-evaluate r-cran-fansi r-cran-farver
515s   r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-isoband
515s   r-cran-knitr r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-magrittr
515s   r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
515s   r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-r.cache
515s   r-cran-r.devices r-cran-r.methodss3 r-cran-r.oo r-cran-r.rsp r-cran-r.utils
515s   r-cran-r6 r-cran-rcolorbrewer r-cran-rlang r-cran-scales r-cran-tibble
515s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun
515s   r-cran-yaml tcl tcl8.6 unzip x11-common xdg-utils zip
515s 0 upgraded, 100 newly installed, 0 to remove and 1 not upgraded.
515s Need to get 80.2 MB/80.2 MB of archives.
515s After this operation, 171 MB of additional disk space will be used.
515s Get:1 /tmp/autopkgtest.5uVHjq/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [756 B]
515s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfreetype6 armhf 2.13.2+dfsg-1build2 [331 kB]
515s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
515s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
515s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu1 [37.4 kB]
515s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu1 [113 kB]
515s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig armhf 2.15.0-1.1ubuntu1 [189 kB]
515s Get:8 http://ftpmaster.internal/ubuntu noble/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
515s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
516s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB]
516s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB]
516s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB]
516s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B]
516s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB]
516s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcairo2 armhf 1.18.0-1ubuntu1 [482 kB]
516s Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libdatrie1 armhf 0.2.13-3 [16.9 kB]
516s Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB]
516s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran5 armhf 14-20240315-1ubuntu1 [312 kB]
516s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240315-1ubuntu1 [125 kB]
516s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libgraphite2-3 armhf 1.3.14-2 [72.7 kB]
516s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libharfbuzz0b armhf 8.3.0-2build1 [446 kB]
516s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB]
516s Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB]
516s Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB]
516s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
516s Get:26 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
516s Get:27 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
516s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
516s Get:29 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
516s Get:30 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB]
516s Get:31 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB]
516s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libthai-data all 0.1.29-2 [158 kB]
516s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libthai0 armhf 0.1.29-2 [15.1 kB]
516s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [206 kB]
516s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [36.4 kB]
516s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [24.9 kB]
516s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB]
516s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libpaper-utils armhf 1.1.29 [8170 B]
516s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsharpyuv0 armhf 1.3.2-0.4build2 [13.6 kB]
516s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB]
516s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [903 kB]
516s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB]
516s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libwebp7 armhf 1.3.2-0.4build2 [183 kB]
516s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu1 [178 kB]
516s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB]
516s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B]
516s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.14-1 [681 kB]
516s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxt6t64 armhf 1:1.2.1-1.2 [145 kB]
516s Get:49 http://ftpmaster.internal/ubuntu noble/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB]
516s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf zip armhf 3.0-13 [162 kB]
516s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf unzip armhf 6.0-28ubuntu3 [163 kB]
516s Get:52 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
516s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-core armhf 4.3.3-2build1 [26.6 MB]
517s Get:54 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB]
517s Get:55 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB]
518s Get:56 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1538 kB]
518s Get:57 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-commonmark armhf 1.9.1-1 [110 kB]
518s Get:58 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-digest armhf 0.6.34-1 [180 kB]
518s Get:59 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-evaluate all 0.23-1 [90.2 kB]
518s Get:60 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
518s Get:61 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-farver armhf 2.1.1-1 [1346 kB]
518s Get:62 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB]
518s Get:63 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rlang armhf 1.1.3-1 [1658 kB]
518s Get:64 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
518s Get:65 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
518s Get:66 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB]
518s Get:67 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mass armhf 7.3-60.0.1-1 [1118 kB]
518s Get:68 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lattice armhf 0.22-5-1 [1341 kB]
518s Get:69 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-nlme armhf 3.1.164-1 [2252 kB]
518s Get:70 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrix armhf 1.6-5-1 [3762 kB]
518s Get:71 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mgcv armhf 1.9-1-1 [3205 kB]
518s Get:72 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB]
518s Get:73 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB]
518s Get:74 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB]
518s Get:75 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
518s Get:76 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB]
518s Get:77 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-scales all 1.3.0-1 [603 kB]
518s Get:78 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB]
518s Get:79 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB]
518s Get:80 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB]
518s Get:81 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
518s Get:82 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
518s Get:83 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tibble armhf 3.2.1+dfsg-2 [415 kB]
518s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-withr all 3.0.0+dfsg-1 [228 kB]
518s Get:85 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
518s Get:86 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-xfun armhf 0.41+dfsg-1 [415 kB]
518s Get:87 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-highr all 0.10+dfsg-1 [38.3 kB]
518s Get:88 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-yaml armhf 2.3.8-1 [99.0 kB]
518s Get:89 http://ftpmaster.internal/ubuntu noble/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
518s Get:90 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-knitr all 1.45+dfsg-1 [917 kB]
518s Get:91 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-markdown all 1.12+dfsg-1 [179 kB]
518s Get:92 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrixstats armhf 1.2.0-1 [478 kB]
518s Get:93 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.methodss3 all 1.8.2-1 [84.0 kB]
518s Get:94 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.oo all 1.26.0-1 [955 kB]
518s Get:95 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.utils all 2.12.3-1 [1386 kB]
518s Get:96 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.cache all 0.16.0-1 [113 kB]
518s Get:97 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.devices all 2.17.2+ds-1 [398 kB]
518s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcl8.6 armhf 8.6.14+dfsg-1 [14.6 kB]
518s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcl armhf 8.6.14 [4016 B]
518s Get:100 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r.rsp all 0.46.0+ds-1 [1412 kB]
520s Preconfiguring packages ...
520s Fetched 80.2 MB in 4s (20.9 MB/s)
520s Selecting previously unselected package libfreetype6:armhf.
520s (Reading database ... 
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(Reading database ... 58436 files and directories currently installed.)
520s Preparing to unpack .../00-libfreetype6_2.13.2+dfsg-1build2_armhf.deb ...
520s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build2) ...
520s Selecting previously unselected package fonts-dejavu-mono.
521s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
521s Unpacking fonts-dejavu-mono (2.37-8) ...
521s Selecting previously unselected package fonts-dejavu-core.
521s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
521s Unpacking fonts-dejavu-core (2.37-8) ...
521s Selecting previously unselected package fontconfig-config.
521s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu1_armhf.deb ...
521s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ...
521s Selecting previously unselected package libfontconfig1:armhf.
521s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu1_armhf.deb ...
521s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
521s Selecting previously unselected package fontconfig.
521s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu1_armhf.deb ...
521s Unpacking fontconfig (2.15.0-1.1ubuntu1) ...
521s Selecting previously unselected package fonts-glyphicons-halflings.
521s Preparing to unpack .../06-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
521s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
521s Selecting previously unselected package fonts-mathjax.
521s Preparing to unpack .../07-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
521s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
522s Selecting previously unselected package libblas3:armhf.
522s Preparing to unpack .../08-libblas3_3.12.0-3_armhf.deb ...
522s Unpacking libblas3:armhf (3.12.0-3) ...
522s Selecting previously unselected package libpixman-1-0:armhf.
522s Preparing to unpack .../09-libpixman-1-0_0.42.2-1_armhf.deb ...
522s Unpacking libpixman-1-0:armhf (0.42.2-1) ...
522s Selecting previously unselected package libxcb-render0:armhf.
522s Preparing to unpack .../10-libxcb-render0_1.15-1_armhf.deb ...
522s Unpacking libxcb-render0:armhf (1.15-1) ...
522s Selecting previously unselected package libxcb-shm0:armhf.
522s Preparing to unpack .../11-libxcb-shm0_1.15-1_armhf.deb ...
522s Unpacking libxcb-shm0:armhf (1.15-1) ...
522s Selecting previously unselected package libxrender1:armhf.
522s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
522s Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
522s Selecting previously unselected package libcairo2:armhf.
522s Preparing to unpack .../13-libcairo2_1.18.0-1ubuntu1_armhf.deb ...
522s Unpacking libcairo2:armhf (1.18.0-1ubuntu1) ...
522s Selecting previously unselected package libdatrie1:armhf.
522s Preparing to unpack .../14-libdatrie1_0.2.13-3_armhf.deb ...
522s Unpacking libdatrie1:armhf (0.2.13-3) ...
522s Selecting previously unselected package libdeflate0:armhf.
522s Preparing to unpack .../15-libdeflate0_1.19-1_armhf.deb ...
522s Unpacking libdeflate0:armhf (1.19-1) ...
522s Selecting previously unselected package libgfortran5:armhf.
522s Preparing to unpack .../16-libgfortran5_14-20240315-1ubuntu1_armhf.deb ...
522s Unpacking libgfortran5:armhf (14-20240315-1ubuntu1) ...
522s Selecting previously unselected package libgomp1:armhf.
522s Preparing to unpack .../17-libgomp1_14-20240315-1ubuntu1_armhf.deb ...
522s Unpacking libgomp1:armhf (14-20240315-1ubuntu1) ...
522s Selecting previously unselected package libgraphite2-3:armhf.
522s Preparing to unpack .../18-libgraphite2-3_1.3.14-2_armhf.deb ...
522s Unpacking libgraphite2-3:armhf (1.3.14-2) ...
522s Selecting previously unselected package libharfbuzz0b:armhf.
522s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2build1_armhf.deb ...
522s Unpacking libharfbuzz0b:armhf (8.3.0-2build1) ...
522s Selecting previously unselected package x11-common.
522s Preparing to unpack .../20-x11-common_1%3a7.7+23ubuntu2_all.deb ...
522s Unpacking x11-common (1:7.7+23ubuntu2) ...
522s Selecting previously unselected package libice6:armhf.
522s Preparing to unpack .../21-libice6_2%3a1.0.10-1build2_armhf.deb ...
522s Unpacking libice6:armhf (2:1.0.10-1build2) ...
522s Selecting previously unselected package libjpeg-turbo8:armhf.
522s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ...
522s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
522s Selecting previously unselected package libjpeg8:armhf.
522s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_armhf.deb ...
522s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
522s Selecting previously unselected package libjs-bootstrap.
522s Preparing to unpack .../24-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
522s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
523s Selecting previously unselected package libjs-highlight.js.
523s Preparing to unpack .../25-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
523s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
523s Selecting previously unselected package libjs-jquery.
523s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
523s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
523s Selecting previously unselected package libjs-jquery-datatables.
523s Preparing to unpack .../27-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
523s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
523s Selecting previously unselected package liblapack3:armhf.
523s Preparing to unpack .../28-liblapack3_3.12.0-3_armhf.deb ...
523s Unpacking liblapack3:armhf (3.12.0-3) ...
523s Selecting previously unselected package liblerc4:armhf.
523s Preparing to unpack .../29-liblerc4_4.0.0+ds-4ubuntu1_armhf.deb ...
523s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu1) ...
523s Selecting previously unselected package libthai-data.
523s Preparing to unpack .../30-libthai-data_0.1.29-2_all.deb ...
523s Unpacking libthai-data (0.1.29-2) ...
523s Selecting previously unselected package libthai0:armhf.
523s Preparing to unpack .../31-libthai0_0.1.29-2_armhf.deb ...
523s Unpacking libthai0:armhf (0.1.29-2) ...
523s Selecting previously unselected package libpango-1.0-0:armhf.
523s Preparing to unpack .../32-libpango-1.0-0_1.52.1+ds-1_armhf.deb ...
523s Unpacking libpango-1.0-0:armhf (1.52.1+ds-1) ...
523s Selecting previously unselected package libpangoft2-1.0-0:armhf.
523s Preparing to unpack .../33-libpangoft2-1.0-0_1.52.1+ds-1_armhf.deb ...
523s Unpacking libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
523s Selecting previously unselected package libpangocairo-1.0-0:armhf.
523s Preparing to unpack .../34-libpangocairo-1.0-0_1.52.1+ds-1_armhf.deb ...
523s Unpacking libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
523s Selecting previously unselected package libpaper1:armhf.
523s Preparing to unpack .../35-libpaper1_1.1.29_armhf.deb ...
523s Unpacking libpaper1:armhf (1.1.29) ...
523s Selecting previously unselected package libpaper-utils.
523s Preparing to unpack .../36-libpaper-utils_1.1.29_armhf.deb ...
523s Unpacking libpaper-utils (1.1.29) ...
523s Selecting previously unselected package libsharpyuv0:armhf.
523s Preparing to unpack .../37-libsharpyuv0_1.3.2-0.4build2_armhf.deb ...
523s Unpacking libsharpyuv0:armhf (1.3.2-0.4build2) ...
523s Selecting previously unselected package libsm6:armhf.
523s Preparing to unpack .../38-libsm6_2%3a1.2.3-1build2_armhf.deb ...
523s Unpacking libsm6:armhf (2:1.2.3-1build2) ...
523s Selecting previously unselected package libtcl8.6:armhf.
524s Preparing to unpack .../39-libtcl8.6_8.6.14+dfsg-1_armhf.deb ...
524s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1) ...
524s Selecting previously unselected package libjbig0:armhf.
524s Preparing to unpack .../40-libjbig0_2.1-6.1ubuntu1_armhf.deb ...
524s Unpacking libjbig0:armhf (2.1-6.1ubuntu1) ...
524s Selecting previously unselected package libwebp7:armhf.
524s Preparing to unpack .../41-libwebp7_1.3.2-0.4build2_armhf.deb ...
524s Unpacking libwebp7:armhf (1.3.2-0.4build2) ...
524s Selecting previously unselected package libtiff6:armhf.
524s Preparing to unpack .../42-libtiff6_4.5.1+git230720-4ubuntu1_armhf.deb ...
524s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
524s Selecting previously unselected package libxft2:armhf.
524s Preparing to unpack .../43-libxft2_2.3.6-1_armhf.deb ...
524s Unpacking libxft2:armhf (2.3.6-1) ...
524s Selecting previously unselected package libxss1:armhf.
524s Preparing to unpack .../44-libxss1_1%3a1.2.3-1build2_armhf.deb ...
524s Unpacking libxss1:armhf (1:1.2.3-1build2) ...
524s Selecting previously unselected package libtk8.6:armhf.
524s Preparing to unpack .../45-libtk8.6_8.6.14-1_armhf.deb ...
524s Unpacking libtk8.6:armhf (8.6.14-1) ...
524s Selecting previously unselected package libxt6t64:armhf.
524s Preparing to unpack .../46-libxt6t64_1%3a1.2.1-1.2_armhf.deb ...
524s Unpacking libxt6t64:armhf (1:1.2.1-1.2) ...
524s Selecting previously unselected package node-normalize.css.
524s Preparing to unpack .../47-node-normalize.css_8.0.1-5_all.deb ...
524s Unpacking node-normalize.css (8.0.1-5) ...
524s Selecting previously unselected package zip.
524s Preparing to unpack .../48-zip_3.0-13_armhf.deb ...
524s Unpacking zip (3.0-13) ...
524s Selecting previously unselected package unzip.
524s Preparing to unpack .../49-unzip_6.0-28ubuntu3_armhf.deb ...
524s Unpacking unzip (6.0-28ubuntu3) ...
524s Selecting previously unselected package xdg-utils.
524s Preparing to unpack .../50-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
524s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
524s Selecting previously unselected package r-base-core.
524s Preparing to unpack .../51-r-base-core_4.3.3-2build1_armhf.deb ...
524s Unpacking r-base-core (4.3.3-2build1) ...
525s Selecting previously unselected package r-cran-base64enc.
525s Preparing to unpack .../52-r-cran-base64enc_0.1-3-3_armhf.deb ...
525s Unpacking r-cran-base64enc (0.1-3-3) ...
525s Selecting previously unselected package r-cran-cli.
525s Preparing to unpack .../53-r-cran-cli_3.6.2-1_armhf.deb ...
525s Unpacking r-cran-cli (3.6.2-1) ...
525s Selecting previously unselected package r-cran-colorspace.
525s Preparing to unpack .../54-r-cran-colorspace_2.1-0+dfsg-1_armhf.deb ...
525s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
525s Selecting previously unselected package r-cran-commonmark.
525s Preparing to unpack .../55-r-cran-commonmark_1.9.1-1_armhf.deb ...
525s Unpacking r-cran-commonmark (1.9.1-1) ...
525s Selecting previously unselected package r-cran-digest.
525s Preparing to unpack .../56-r-cran-digest_0.6.34-1_armhf.deb ...
525s Unpacking r-cran-digest (0.6.34-1) ...
525s Selecting previously unselected package r-cran-evaluate.
526s Preparing to unpack .../57-r-cran-evaluate_0.23-1_all.deb ...
526s Unpacking r-cran-evaluate (0.23-1) ...
526s Selecting previously unselected package r-cran-fansi.
526s Preparing to unpack .../58-r-cran-fansi_1.0.5-1_armhf.deb ...
526s Unpacking r-cran-fansi (1.0.5-1) ...
526s Selecting previously unselected package r-cran-farver.
526s Preparing to unpack .../59-r-cran-farver_2.1.1-1_armhf.deb ...
526s Unpacking r-cran-farver (2.1.1-1) ...
526s Selecting previously unselected package r-cran-glue.
526s Preparing to unpack .../60-r-cran-glue_1.7.0-1_armhf.deb ...
526s Unpacking r-cran-glue (1.7.0-1) ...
526s Selecting previously unselected package r-cran-rlang.
526s Preparing to unpack .../61-r-cran-rlang_1.1.3-1_armhf.deb ...
526s Unpacking r-cran-rlang (1.1.3-1) ...
526s Selecting previously unselected package r-cran-lifecycle.
526s Preparing to unpack .../62-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
526s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
526s Selecting previously unselected package r-cran-gtable.
526s Preparing to unpack .../63-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
526s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
526s Selecting previously unselected package r-cran-isoband.
526s Preparing to unpack .../64-r-cran-isoband_0.2.7-1_armhf.deb ...
526s Unpacking r-cran-isoband (0.2.7-1) ...
526s Selecting previously unselected package r-cran-mass.
526s Preparing to unpack .../65-r-cran-mass_7.3-60.0.1-1_armhf.deb ...
526s Unpacking r-cran-mass (7.3-60.0.1-1) ...
526s Selecting previously unselected package r-cran-lattice.
526s Preparing to unpack .../66-r-cran-lattice_0.22-5-1_armhf.deb ...
526s Unpacking r-cran-lattice (0.22-5-1) ...
526s Selecting previously unselected package r-cran-nlme.
526s Preparing to unpack .../67-r-cran-nlme_3.1.164-1_armhf.deb ...
526s Unpacking r-cran-nlme (3.1.164-1) ...
526s Selecting previously unselected package r-cran-matrix.
526s Preparing to unpack .../68-r-cran-matrix_1.6-5-1_armhf.deb ...
526s Unpacking r-cran-matrix (1.6-5-1) ...
527s Selecting previously unselected package r-cran-mgcv.
527s Preparing to unpack .../69-r-cran-mgcv_1.9-1-1_armhf.deb ...
527s Unpacking r-cran-mgcv (1.9-1-1) ...
527s Selecting previously unselected package r-cran-labeling.
527s Preparing to unpack .../70-r-cran-labeling_0.4.3-1_all.deb ...
527s Unpacking r-cran-labeling (0.4.3-1) ...
527s Selecting previously unselected package r-cran-munsell.
527s Preparing to unpack .../71-r-cran-munsell_0.5.0-2build1_all.deb ...
527s Unpacking r-cran-munsell (0.5.0-2build1) ...
527s Selecting previously unselected package r-cran-r6.
527s Preparing to unpack .../72-r-cran-r6_2.5.1-1_all.deb ...
527s Unpacking r-cran-r6 (2.5.1-1) ...
527s Selecting previously unselected package r-cran-rcolorbrewer.
527s Preparing to unpack .../73-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
527s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
527s Selecting previously unselected package r-cran-viridislite.
527s Preparing to unpack .../74-r-cran-viridislite_0.4.2-2_all.deb ...
527s Unpacking r-cran-viridislite (0.4.2-2) ...
527s Selecting previously unselected package r-cran-scales.
527s Preparing to unpack .../75-r-cran-scales_1.3.0-1_all.deb ...
527s Unpacking r-cran-scales (1.3.0-1) ...
527s Selecting previously unselected package r-cran-magrittr.
527s Preparing to unpack .../76-r-cran-magrittr_2.0.3-1_armhf.deb ...
527s Unpacking r-cran-magrittr (2.0.3-1) ...
527s Selecting previously unselected package r-cran-utf8.
527s Preparing to unpack .../77-r-cran-utf8_1.2.4-1_armhf.deb ...
527s Unpacking r-cran-utf8 (1.2.4-1) ...
527s Selecting previously unselected package r-cran-vctrs.
527s Preparing to unpack .../78-r-cran-vctrs_0.6.5-1_armhf.deb ...
527s Unpacking r-cran-vctrs (0.6.5-1) ...
527s Selecting previously unselected package r-cran-pillar.
527s Preparing to unpack .../79-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
527s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
527s Selecting previously unselected package r-cran-pkgconfig.
528s Preparing to unpack .../80-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
528s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
528s Selecting previously unselected package r-cran-tibble.
528s Preparing to unpack .../81-r-cran-tibble_3.2.1+dfsg-2_armhf.deb ...
528s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
528s Selecting previously unselected package r-cran-withr.
528s Preparing to unpack .../82-r-cran-withr_3.0.0+dfsg-1_all.deb ...
528s Unpacking r-cran-withr (3.0.0+dfsg-1) ...
528s Selecting previously unselected package r-cran-ggplot2.
528s Preparing to unpack .../83-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
528s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
528s Selecting previously unselected package r-cran-xfun.
528s Preparing to unpack .../84-r-cran-xfun_0.41+dfsg-1_armhf.deb ...
528s Unpacking r-cran-xfun (0.41+dfsg-1) ...
528s Selecting previously unselected package r-cran-highr.
528s Preparing to unpack .../85-r-cran-highr_0.10+dfsg-1_all.deb ...
528s Unpacking r-cran-highr (0.10+dfsg-1) ...
528s Selecting previously unselected package r-cran-yaml.
528s Preparing to unpack .../86-r-cran-yaml_2.3.8-1_armhf.deb ...
528s Unpacking r-cran-yaml (2.3.8-1) ...
528s Selecting previously unselected package libjs-mathjax.
528s Preparing to unpack .../87-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
528s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
530s Selecting previously unselected package r-cran-knitr.
530s Preparing to unpack .../88-r-cran-knitr_1.45+dfsg-1_all.deb ...
530s Unpacking r-cran-knitr (1.45+dfsg-1) ...
530s Selecting previously unselected package r-cran-markdown.
530s Preparing to unpack .../89-r-cran-markdown_1.12+dfsg-1_all.deb ...
530s Unpacking r-cran-markdown (1.12+dfsg-1) ...
530s Selecting previously unselected package r-cran-matrixstats.
530s Preparing to unpack .../90-r-cran-matrixstats_1.2.0-1_armhf.deb ...
530s Unpacking r-cran-matrixstats (1.2.0-1) ...
530s Selecting previously unselected package r-cran-r.methodss3.
530s Preparing to unpack .../91-r-cran-r.methodss3_1.8.2-1_all.deb ...
530s Unpacking r-cran-r.methodss3 (1.8.2-1) ...
530s Selecting previously unselected package r-cran-r.oo.
530s Preparing to unpack .../92-r-cran-r.oo_1.26.0-1_all.deb ...
530s Unpacking r-cran-r.oo (1.26.0-1) ...
530s Selecting previously unselected package r-cran-r.utils.
530s Preparing to unpack .../93-r-cran-r.utils_2.12.3-1_all.deb ...
530s Unpacking r-cran-r.utils (2.12.3-1) ...
530s Selecting previously unselected package r-cran-r.cache.
530s Preparing to unpack .../94-r-cran-r.cache_0.16.0-1_all.deb ...
530s Unpacking r-cran-r.cache (0.16.0-1) ...
530s Selecting previously unselected package r-cran-r.devices.
530s Preparing to unpack .../95-r-cran-r.devices_2.17.2+ds-1_all.deb ...
530s Unpacking r-cran-r.devices (2.17.2+ds-1) ...
531s Selecting previously unselected package tcl8.6.
531s Preparing to unpack .../96-tcl8.6_8.6.14+dfsg-1_armhf.deb ...
531s Unpacking tcl8.6 (8.6.14+dfsg-1) ...
531s Selecting previously unselected package tcl.
531s Preparing to unpack .../97-tcl_8.6.14_armhf.deb ...
531s Unpacking tcl (8.6.14) ...
531s Selecting previously unselected package r-cran-r.rsp.
531s Preparing to unpack .../98-r-cran-r.rsp_0.46.0+ds-1_all.deb ...
531s Unpacking r-cran-r.rsp (0.46.0+ds-1) ...
531s Selecting previously unselected package autopkgtest-satdep.
531s Preparing to unpack .../99-1-autopkgtest-satdep.deb ...
531s Unpacking autopkgtest-satdep (0) ...
531s Setting up libgraphite2-3:armhf (1.3.14-2) ...
531s Setting up libpixman-1-0:armhf (0.42.2-1) ...
531s Setting up libsharpyuv0:armhf (1.3.2-0.4build2) ...
531s Setting up libpaper1:armhf (1.1.29) ...
531s 
531s Creating config file /etc/papersize with new version
531s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
531s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ...
531s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
531s Setting up libxrender1:armhf (1:0.9.10-1.1) ...
531s Setting up libdatrie1:armhf (0.2.13-3) ...
531s Setting up libxcb-render0:armhf (1.15-1) ...
531s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
531s Setting up unzip (6.0-28ubuntu3) ...
531s Setting up x11-common (1:7.7+23ubuntu2) ...
532s Setting up libdeflate0:armhf (1.19-1) ...
532s Setting up libxcb-shm0:armhf (1.15-1) ...
532s Setting up libpaper-utils (1.1.29) ...
532s Setting up libgomp1:armhf (14-20240315-1ubuntu1) ...
532s Setting up libjbig0:armhf (2.1-6.1ubuntu1) ...
532s Setting up zip (3.0-13) ...
532s Setting up libblas3:armhf (3.12.0-3) ...
532s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
532s Setting up libfreetype6:armhf (2.13.2+dfsg-1build2) ...
532s Setting up fonts-dejavu-mono (2.37-8) ...
532s Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ...
532s Setting up fonts-dejavu-core (2.37-8) ...
532s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
532s Setting up libgfortran5:armhf (14-20240315-1ubuntu1) ...
532s Setting up libwebp7:armhf (1.3.2-0.4build2) ...
532s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
532s Setting up libharfbuzz0b:armhf (8.3.0-2build1) ...
532s Setting up libthai-data (0.1.29-2) ...
532s Setting up libxss1:armhf (1:1.2.3-1build2) ...
532s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
532s Setting up node-normalize.css (8.0.1-5) ...
532s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
532s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
532s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
532s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
532s Setting up libice6:armhf (2:1.0.10-1build2) ...
532s Setting up tcl8.6 (8.6.14+dfsg-1) ...
532s Setting up liblapack3:armhf (3.12.0-3) ...
532s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
532s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ...
532s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
532s Setting up libthai0:armhf (0.1.29-2) ...
532s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
532s Setting up tcl (8.6.14) ...
532s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
532s Setting up libsm6:armhf (2:1.2.3-1build2) ...
532s Setting up fontconfig (2.15.0-1.1ubuntu1) ...
535s Regenerating fonts cache... done.
535s Setting up libxft2:armhf (2.3.6-1) ...
535s Setting up libtk8.6:armhf (8.6.14-1) ...
535s Setting up libpango-1.0-0:armhf (1.52.1+ds-1) ...
535s Setting up libcairo2:armhf (1.18.0-1ubuntu1) ...
535s Setting up libxt6t64:armhf (1:1.2.1-1.2) ...
535s Setting up libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
535s Setting up libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
535s Setting up r-base-core (4.3.3-2build1) ...
535s 
535s Creating config file /etc/R/Renviron with new version
535s Setting up r-cran-labeling (0.4.3-1) ...
535s Setting up r-cran-lattice (0.22-5-1) ...
535s Setting up r-cran-nlme (3.1.164-1) ...
535s Setting up r-cran-farver (2.1.1-1) ...
535s Setting up r-cran-viridislite (0.4.2-2) ...
535s Setting up r-cran-commonmark (1.9.1-1) ...
535s Setting up r-cran-r6 (2.5.1-1) ...
535s Setting up r-cran-magrittr (2.0.3-1) ...
535s Setting up r-cran-rlang (1.1.3-1) ...
535s Setting up r-cran-matrixstats (1.2.0-1) ...
535s Setting up r-cran-xfun (0.41+dfsg-1) ...
535s Setting up r-cran-withr (3.0.0+dfsg-1) ...
535s Setting up r-cran-base64enc (0.1-3-3) ...
535s Setting up r-cran-digest (0.6.34-1) ...
535s Setting up r-cran-yaml (2.3.8-1) ...
535s Setting up r-cran-evaluate (0.23-1) ...
535s Setting up r-cran-highr (0.10+dfsg-1) ...
535s Setting up r-cran-fansi (1.0.5-1) ...
535s Setting up r-cran-mass (7.3-60.0.1-1) ...
535s Setting up r-cran-glue (1.7.0-1) ...
535s Setting up r-cran-cli (3.6.2-1) ...
535s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
535s Setting up r-cran-r.methodss3 (1.8.2-1) ...
535s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
535s Setting up r-cran-utf8 (1.2.4-1) ...
535s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
535s Setting up r-cran-markdown (1.12+dfsg-1) ...
535s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
535s Setting up r-cran-isoband (0.2.7-1) ...
535s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
535s Setting up r-cran-matrix (1.6-5-1) ...
535s Setting up r-cran-knitr (1.45+dfsg-1) ...
535s Setting up r-cran-mgcv (1.9-1-1) ...
535s Setting up r-cran-vctrs (0.6.5-1) ...
535s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
535s Setting up r-cran-munsell (0.5.0-2build1) ...
535s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
535s Setting up r-cran-r.oo (1.26.0-1) ...
535s Setting up r-cran-scales (1.3.0-1) ...
535s Setting up r-cran-r.utils (2.12.3-1) ...
535s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
535s Setting up r-cran-r.devices (2.17.2+ds-1) ...
535s Setting up r-cran-r.cache (0.16.0-1) ...
535s Setting up r-cran-r.rsp (0.46.0+ds-1) ...
535s Setting up autopkgtest-satdep (0) ...
535s Processing triggers for man-db (2.12.0-3build4) ...
536s Processing triggers for install-info (7.1-3build1) ...
536s Processing triggers for libc-bin (2.39-0ubuntu6) ...
611s (Reading database ... 69462 files and directories currently installed.)
611s Removing autopkgtest-satdep (0) ...
616s autopkgtest [12:28:16]: test run-unit-test: [-----------------------
619s 
619s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
619s Copyright (C) 2024 The R Foundation for Statistical Computing
619s Platform: arm-unknown-linux-gnueabihf (32-bit)
619s 
619s R is free software and comes with ABSOLUTELY NO WARRANTY.
619s You are welcome to redistribute it under certain conditions.
619s Type 'license()' or 'licence()' for distribution details.
619s 
619s R is a collaborative project with many contributors.
619s Type 'contributors()' for more information and
619s 'citation()' on how to cite R or R packages in publications.
619s 
619s Type 'demo()' for some demos, 'help()' for on-line help, or
619s 'help.start()' for an HTML browser interface to help.
619s Type 'q()' to quit R.
619s 
619s > library("matrixStats")
619s > 
619s > allocArray_R <- function(nrow, ncol, value = NA) {
619s +   array(data = value, dim = dim)
619s + }
619s > 
619s > values <- list(
619s +   -1L, 0L, +1L, NA_integer_, .Machine$integer.max,
619s +   -1, 0, +1, NA_real_, NaN, -Inf, +Inf,
619s +   .Machine$double.xmin, .Machine$double.xmax,
619s +   .Machine$double.eps, .Machine$double.neg.eps,
619s +   FALSE, TRUE, NA
619s + )
619s > 
619s > dim <- c(2L, 4L, 3L)
619s > for (value in values) {
619s +   x0 <- allocArray_R(dim, value = value)
619s +   x <- allocArray(dim, value = value)
619s +   if (!identical(x, x0)) {
619s +     str(list(dim = dim, value = value, x = x, x0 = x0))
619s +     stopifnot(identical(x, x0))
619s +   }
619s + }
619s > 
619s 
619s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
619s Copyright (C) 2024 The R Foundation for Statistical Computing
619s Platform: arm-unknown-linux-gnueabihf (32-bit)
619s 
619s R is free software and comes with ABSOLUTELY NO WARRANTY.
619s You are welcome to redistribute it under certain conditions.
619s Type 'license()' or 'licence()' for distribution details.
619s 
619s R is a collaborative project with many contributors.
619s Type 'contributors()' for more information and
619s 'citation()' on how to cite R or R packages in publications.
619s 
619s Type 'demo()' for some demos, 'help()' for on-line help, or
619s 'help.start()' for an HTML browser interface to help.
619s Type 'q()' to quit R.
619s 
619s > library("matrixStats")
619s > 
619s > allocMatrix_R <- function(nrow, ncol, value = NA) {
619s +   matrix(data = value, nrow = nrow, ncol = ncol)
619s + }
619s > 
619s > values <- list(
619s +   -1L, 0L, +1L, NA_integer_, .Machine$integer.max,
619s +   -1, 0, +1, NA_real_, NaN, -Inf, +Inf,
619s +   .Machine$double.xmin, .Machine$double.xmax,
619s +   .Machine$double.eps, .Machine$double.neg.eps,
619s +   FALSE, TRUE, NA
619s + )
619s > 
619s > nrow <- 2L
619s > ncol <- 3L
619s > for (value in values) {
619s +   x0 <- allocMatrix_R(nrow, ncol, value = value)
619s +   x <- allocMatrix(nrow, ncol, value = value)
619s +   if (!identical(x, x0)) {
619s +     str(list(nrow = nrow, ncol = ncol, value = value, x = x, x0 = x0))
619s +     stopifnot(identical(x, x0))
619s +   }
619s + }
619s > 
620s 
620s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
620s Copyright (C) 2024 The R Foundation for Statistical Computing
620s Platform: arm-unknown-linux-gnueabihf (32-bit)
620s 
620s R is free software and comes with ABSOLUTELY NO WARRANTY.
620s You are welcome to redistribute it under certain conditions.
620s Type 'license()' or 'licence()' for distribution details.
620s 
620s R is a collaborative project with many contributors.
620s Type 'contributors()' for more information and
620s 'citation()' on how to cite R or R packages in publications.
620s 
620s Type 'demo()' for some demos, 'help()' for on-line help, or
620s 'help.start()' for an HTML browser interface to help.
620s Type 'q()' to quit R.
620s 
620s > library("matrixStats")
620s > 
620s > allocVector_R <- function(length, value = NA) {
620s +   x <- vector(mode = typeof(value), length = length)
620s +   if (!is.finite(value) || value != 0) x[] <- value
620s +   x
620s + }
620s > 
620s > values <- list(
620s +   -1L, 0L, +1L, NA_integer_, .Machine$integer.max,
620s +   -1, 0, +1, NA_real_, NaN, -Inf, +Inf,
620s +   .Machine$double.xmin, .Machine$double.xmax,
620s +   .Machine$double.eps, .Machine$double.neg.eps,
620s +   FALSE, TRUE, NA
620s + )
620s > 
620s > n <- 10L
620s > for (value in values) {
620s +   x0 <- allocVector_R(n, value = value)
620s +   x <- allocVector(n, value = value)
620s +   if (!identical(x, x0)) {
620s +     str(list(n = n, value = value, x = x, x0 = x0))
620s +     stopifnot(identical(x, x0))
620s +   }
620s + }
620s > 
620s 
620s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
620s Copyright (C) 2024 The R Foundation for Statistical Computing
620s Platform: arm-unknown-linux-gnueabihf (32-bit)
620s 
620s R is free software and comes with ABSOLUTELY NO WARRANTY.
620s You are welcome to redistribute it under certain conditions.
620s Type 'license()' or 'licence()' for distribution details.
620s 
620s R is a collaborative project with many contributors.
620s Type 'contributors()' for more information and
620s 'citation()' on how to cite R or R packages in publications.
620s 
620s Type 'demo()' for some demos, 'help()' for on-line help, or
620s 'help.start()' for an HTML browser interface to help.
620s Type 'q()' to quit R.
620s 
620s > library("matrixStats")
620s > 
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > # Setup
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > data <- data.frame(
620s +   logical   = c(TRUE, FALSE, TRUE),
620s +   integer   = 1:3,
620s +   double    = seq(from = 1.0, to = 3.0, by = 1.0),
620s +   complex   = seq(from = 1.0, to = 3.0, by = 1.0) + 1.0i,
620s +   character = letters[1:3],
620s +   stringsAsFactors = FALSE
620s + )
620s > 
620s > modes <- names(data)
620s > 
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > # Special cases
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > cat("NULL...\n")
620s NULL...
620s > stopifnot(identical(anyMissing(NULL), FALSE))
620s > cat("NULL...done\n")
620s NULL...done
620s > 
620s > cat("raw...\n")
620s raw...
620s > stopifnot(identical(anyMissing(as.raw(0:2)), FALSE))
620s > cat("raw...done\n")
620s raw...done
620s > 
620s > cat("list(NULL)...\n")
620s list(NULL)...
620s > stopifnot(identical(anyMissing(list(NULL)), FALSE))
620s > cat("list(NULL)...done\n")
620s list(NULL)...done
620s > 
620s > 
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > # Scalars, vectors, and matrices of various modes
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > for (mode in modes) {
620s +   cat(sprintf("Mode: %s...\n", mode))
620s +   values <- data[[mode]]
620s + 
620s +   # Scalars
620s +   cat(" scalar\n")
620s +   x <- values[1L]
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), FALSE))
620s +   is.na(x) <- TRUE
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), TRUE))
620s + 
620s +   # Vectors
620s +   cat(" vector\n")
620s +   x <- values
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), FALSE))
620s +   is.na(x)[2L] <- TRUE
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), TRUE))
620s + 
620s +   # Matrices
620s +   cat(" matrix\n")
620s +   x <- matrix(c(values, values), ncol = 2L)
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), FALSE))
620s +   is.na(x)[2L] <- TRUE
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), TRUE))
620s + 
620s +   cat(sprintf("Mode: %s...done\n", mode))
620s + } # for (mode ...)
620s Mode: logical...
620s  scalar
620s [1] TRUE
620s [1] NA
620s  vector
620s [1]  TRUE FALSE  TRUE
620s [1] TRUE   NA TRUE
620s  matrix
620s       [,1]  [,2]
620s [1,]  TRUE  TRUE
620s [2,] FALSE FALSE
620s [3,]  TRUE  TRUE
620s      [,1]  [,2]
620s [1,] TRUE  TRUE
620s [2,]   NA FALSE
620s [3,] TRUE  TRUE
620s Mode: logical...done
620s Mode: integer...
620s  scalar
620s [1] 1
620s [1] NA
620s  vector
620s [1] 1 2 3
620s [1]  1 NA  3
620s  matrix
620s      [,1] [,2]
620s [1,]    1    1
620s [2,]    2    2
620s [3,]    3    3
620s      [,1] [,2]
620s [1,]    1    1
620s [2,]   NA    2
620s [3,]    3    3
620s Mode: integer...done
620s Mode: double...
620s  scalar
620s [1] 1
620s [1] NA
620s  vector
620s [1] 1 2 3
620s [1]  1 NA  3
620s  matrix
620s      [,1] [,2]
620s [1,]    1    1
620s [2,]    2    2
620s [3,]    3    3
620s      [,1] [,2]
620s [1,]    1    1
620s [2,]   NA    2
620s [3,]    3    3
620s Mode: double...done
620s Mode: complex...
620s  scalar
620s [1] 1+1i
620s [1] NA
620s  vector
620s [1] 1+1i 2+1i 3+1i
620s [1] 1+1i   NA 3+1i
620s  matrix
620s      [,1] [,2]
620s [1,] 1+1i 1+1i
620s [2,] 2+1i 2+1i
620s [3,] 3+1i 3+1i
620s      [,1] [,2]
620s [1,] 1+1i 1+1i
620s [2,]   NA 2+1i
620s [3,] 3+1i 3+1i
620s Mode: complex...done
620s Mode: character...
620s  scalar
620s [1] "a"
620s [1] NA
620s  vector
620s [1] "a" "b" "c"
620s [1] "a" NA  "c"
620s  matrix
620s      [,1] [,2]
620s [1,] "a"  "a" 
620s [2,] "b"  "b" 
620s [3,] "c"  "c" 
620s      [,1] [,2]
620s [1,] "a"  "a" 
620s [2,] NA   "b" 
620s [3,] "c"  "c" 
620s Mode: character...done
620s > 
620s > 
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > # Data frames
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > cat("data.frame...\n")
620s data.frame...
620s > x <- data
620s > stopifnot(identical(anyMissing(x), FALSE))
620s > for (mode in modes) {
620s +   x <- data
620s +   is.na(x[[mode]])[2L] <- TRUE
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), TRUE))
620s + } # for (mode ...)
620s   logical integer double complex character
620s 1    TRUE       1      1    1+1i         a
620s 2      NA       2      2    2+1i         b
620s 3    TRUE       3      3    3+1i         c
620s   logical integer double complex character
620s 1    TRUE       1      1    1+1i         a
620s 2   FALSE      NA      2    2+1i         b
620s 3    TRUE       3      3    3+1i         c
620s   logical integer double complex character
620s 1    TRUE       1      1    1+1i         a
620s 2   FALSE       2     NA    2+1i         b
620s 3    TRUE       3      3    3+1i         c
620s   logical integer double complex character
620s 1    TRUE       1      1    1+1i         a
620s 2   FALSE       2      2      NA         b
620s 3    TRUE       3      3    3+1i         c
620s   logical integer double complex character
620s 1    TRUE       1      1    1+1i         a
620s 2   FALSE       2      2    2+1i      <NA>
620s 3    TRUE       3      3    3+1i         c
620s > cat("data.frame...done\n")
620s data.frame...done
620s > 
620s > 
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > # Lists
620s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
620s > cat("list...\n")
620s list...
620s > x <- as.list(data)
620s > stopifnot(identical(anyMissing(x), FALSE))
620s > for (mode in modes) {
620s +   x <- as.list(data)
620s +   is.na(x[[mode]])[2L] <- TRUE
620s +   print(x)
620s +   stopifnot(identical(anyMissing(x), TRUE))
620s + } # for (mode ...)
620s $logical
620s [1] TRUE   NA TRUE
620s 
620s $integer
620s [1] 1 2 3
620s 
620s $double
620s [1] 1 2 3
620s 
620s $complex
620s [1] 1+1i 2+1i 3+1i
620s 
620s $character
620s [1] "a" "b" "c"
620s 
620s $logical
620s [1]  TRUE FALSE  TRUE
620s 
620s $integer
620s [1]  1 NA  3
620s 
620s $double
620s [1] 1 2 3
620s 
620s $complex
620s [1] 1+1i 2+1i 3+1i
620s 
620s $character
620s [1] "a" "b" "c"
620s 
620s $logical
620s [1]  TRUE FALSE  TRUE
620s 
620s $integer
620s [1] 1 2 3
620s 
620s $double
620s [1]  1 NA  3
620s 
620s $complex
620s [1] 1+1i 2+1i 3+1i
620s 
620s $character
620s [1] "a" "b" "c"
620s 
620s $logical
620s [1]  TRUE FALSE  TRUE
620s 
620s $integer
620s [1] 1 2 3
620s 
620s $double
620s [1] 1 2 3
620s 
620s $complex
620s [1] 1+1i   NA 3+1i
620s 
620s $character
620s [1] "a" "b" "c"
620s 
620s $logical
620s [1]  TRUE FALSE  TRUE
620s 
620s $integer
620s [1] 1 2 3
620s 
620s $double
620s [1] 1 2 3
620s 
620s $complex
620s [1] 1+1i 2+1i 3+1i
620s 
620s $character
620s [1] "a" NA  "c"
620s 
620s > cat("list...done\n")
620s list...done
620s > 
621s 
621s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
621s Copyright (C) 2024 The R Foundation for Statistical Computing
621s Platform: arm-unknown-linux-gnueabihf (32-bit)
621s 
621s R is free software and comes with ABSOLUTELY NO WARRANTY.
621s You are welcome to redistribute it under certain conditions.
621s Type 'license()' or 'licence()' for distribution details.
621s 
621s R is a collaborative project with many contributors.
621s Type 'contributors()' for more information and
621s 'citation()' on how to cite R or R packages in publications.
621s 
621s Type 'demo()' for some demos, 'help()' for on-line help, or
621s 'help.start()' for an HTML browser interface to help.
621s Type 'q()' to quit R.
621s 
621s > library("matrixStats")
621s > 
621s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
621s > # Subsetted tests
621s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
621s > source("utils/validateIndicesFramework.R")
621s > x <- runif(4, min = -3, max = 3)
621s > x[2] <- NA
621s > for (mode in c("integer", "numeric")) {
621s +   storage.mode(x) <- mode
621s +   for (idxs in index_cases) {
621s +     validateIndicesTestVector(x, idxs,
621s +                               ftest = anyMissing, fsure = function(x, ...) {
621s +         anyValue(x, value = NA)
621s +     })
621s +   }
621s + }
621s > 
621s 
621s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
621s Copyright (C) 2024 The R Foundation for Statistical Computing
621s Platform: arm-unknown-linux-gnueabihf (32-bit)
621s 
621s R is free software and comes with ABSOLUTELY NO WARRANTY.
621s You are welcome to redistribute it under certain conditions.
621s Type 'license()' or 'licence()' for distribution details.
621s 
621s R is a collaborative project with many contributors.
621s Type 'contributors()' for more information and
621s 'citation()' on how to cite R or R packages in publications.
621s 
621s Type 'demo()' for some demos, 'help()' for on-line help, or
621s 'help.start()' for an HTML browser interface to help.
621s Type 'q()' to quit R.
621s 
621s > ## 1. Don't test with valgrind
621s > ## 2. Test only R (>= 3.0.2) because of that's what knitr requires
621s > if  (getRversion() >= "3.0.2" && Sys.getenv("_R_CHECK_USE_VALGRIND_") == "") {
621s + 
621s + ## 3. Make sure all suggested packages are installed / can be loaded
621s + pkgs <- c("base64enc", "ggplot2", "knitr", "markdown", "microbenchmark",
621s +           "R.devices", "R.rsp")
621s + if (all(unlist(lapply(pkgs, FUN = requireNamespace)))) {
621s +   html <- matrixStats:::benchmark("binCounts")
621s +   print(html)
621s + }
621s + 
621s + rm(list = "pkgs")
621s + 
621s + }
621s Loading required namespace: base64enc
621s Loading required namespace: ggplot2
623s Loading required namespace: knitr
623s Loading required namespace: markdown
623s Loading required namespace: microbenchmark
623s Failed with error:  ‘there is no package called ‘microbenchmark’’
623s Loading required namespace: R.devices
623s Loading required namespace: R.rsp
623s > 
624s 
624s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
624s Copyright (C) 2024 The R Foundation for Statistical Computing
624s Platform: arm-unknown-linux-gnueabihf (32-bit)
624s 
624s R is free software and comes with ABSOLUTELY NO WARRANTY.
624s You are welcome to redistribute it under certain conditions.
624s Type 'license()' or 'licence()' for distribution details.
624s 
624s R is a collaborative project with many contributors.
624s Type 'contributors()' for more information and
624s 'citation()' on how to cite R or R packages in publications.
624s 
624s Type 'demo()' for some demos, 'help()' for on-line help, or
624s 'help.start()' for an HTML browser interface to help.
624s Type 'q()' to quit R.
624s 
624s > library("matrixStats")
624s > library("stats")
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Local functions
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > binCounts_hist <- function(x, bx, right = FALSE, ...) {
624s +   n0 <- graphics::hist(x, breaks = bx, right = right,
624s +                        include.lowest = TRUE, plot = FALSE)$counts
624s + }
624s > 
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Non-sorted and sorted positions
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > nx <- 1000L  # Number of data points
624s > nb <- 200L   # Number of bins
624s > 
624s > # Uniformely distributed bins
624s > bx <- seq(from = 0, to = 1, length.out = nb + 1L)
624s > bx <- c(-1, bx, 2)
624s > 
624s > # Sample data points
624s > set.seed(0xBEEF)
624s > x <- runif(nx, min = 0, max = 1)
624s > 
624s > for (kk in 1:2) {
624s +   n0 <- binCounts_hist(x, bx = bx)
624s +   n1 <- binCounts(x, bx = bx)
624s +   # Sanity check
624s +   stopifnot(identical(n1, n0))
624s + 
624s +   # Check reversed
624s +   n1r <- rev(binCounts(-x, bx = rev(-bx), right = TRUE))
624s +   stopifnot(identical(n1r, n1))
624s + 
624s +   # Retry with a sorted vector
624s +   x <- sort(x)
624s + } # for (kk in 1:2)
624s > 
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Missing values
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > x <- 1:40
624s > x[20] <- NA_integer_
624s > nx <- length(x)
624s > 
624s > # Bins
624s > bx <- c(0.5, 50.5, 100.5, 150.5, 200.5)
624s > 
624s > y_smooth0 <- binCounts_hist(x, bx = bx)
624s > y_smooth <- binCounts(x, bx = bx)
624s > # Sanity check
624s > stopifnot(all.equal(y_smooth, y_smooth0))
624s > 
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Border cases
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > x <- 1:10
624s > bx <- min(x) - c(10, 1)
624s > y_smooth <- binCounts(x, bx = bx)
624s > stopifnot(all.equal(y_smooth, 0L))
624s > bx <- range(x)
624s > y_smooth <- binCounts(x, bx = bx)
624s > stopifnot(all.equal(y_smooth, length(x) - 1L))
624s > bx <- max(x) + c(1, 10)
624s > y_smooth <- binCounts(x, bx = bx)
624s > stopifnot(all.equal(y_smooth, 0L))
624s > 
624s > # Every second empty
624s > x <- 1:10
624s > bx <- rep(x, each = 2L)
624s > y_smooth <- binCounts(x, bx = bx)
624s > stopifnot(all.equal(y_smooth, rep(c(0L, 1L), length.out = length(bx) - 1L)))
624s > ## NOTE: binCounts_hist() does not give the same last bin count
624s > 
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Exception handling
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Zero bin bounderies (invalid bin definition)
624s > bx <- double(0L)
624s > res <- try(y_smooth <- binCounts(1:10, bx = bx), silent = TRUE)
624s > stopifnot(inherits(res, "try-error"))
624s > 
624s > # One bin boundery (invalid bin definition)
624s > bx <- double(1L)
624s > res <- try(y_smooth <- binCounts(1:10, bx = bx), silent = TRUE)
624s > stopifnot(inherits(res, "try-error"))
624s > 
624s 
624s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
624s Copyright (C) 2024 The R Foundation for Statistical Computing
624s Platform: arm-unknown-linux-gnueabihf (32-bit)
624s 
624s R is free software and comes with ABSOLUTELY NO WARRANTY.
624s You are welcome to redistribute it under certain conditions.
624s Type 'license()' or 'licence()' for distribution details.
624s 
624s R is a collaborative project with many contributors.
624s Type 'contributors()' for more information and
624s 'citation()' on how to cite R or R packages in publications.
624s 
624s Type 'demo()' for some demos, 'help()' for on-line help, or
624s 'help.start()' for an HTML browser interface to help.
624s Type 'q()' to quit R.
624s 
624s > library("matrixStats")
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Local functions
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > binCounts_hist <- function(x, bx, right = FALSE, ...) {
624s +   n0 <- graphics::hist(x, breaks = bx, right = right,
624s +                        include.lowest = TRUE, plot = FALSE)$counts
624s + }
624s > 
624s > 
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > # Subsetted tests
624s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
624s > source("utils/validateIndicesFramework.R")
624s > x <- runif(6, min = -6, max = 6)
624s > storage.mode(x) <- "integer"
624s > bx <- c(-6, 0, 3, 4, 10)
624s > for (idxs in index_cases) {
624s +   validateIndicesTestVector(x, idxs,
624s +                             ftest = binCounts, fsure = binCounts_hist,
624s +                             bx = bx, right = FALSE)
624s +   validateIndicesTestVector(x, idxs,
624s +                             ftest = binCounts, fsure = binCounts_hist,
624s +                             bx = bx, right = TRUE)
624s + }
625s > 
625s 
625s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
625s Copyright (C) 2024 The R Foundation for Statistical Computing
625s Platform: arm-unknown-linux-gnueabihf (32-bit)
625s 
625s R is free software and comes with ABSOLUTELY NO WARRANTY.
625s You are welcome to redistribute it under certain conditions.
625s Type 'license()' or 'licence()' for distribution details.
625s 
625s R is a collaborative project with many contributors.
625s Type 'contributors()' for more information and
625s 'citation()' on how to cite R or R packages in publications.
625s 
625s Type 'demo()' for some demos, 'help()' for on-line help, or
625s 'help.start()' for an HTML browser interface to help.
625s Type 'q()' to quit R.
625s 
625s > library("matrixStats")
625s > library("stats")
625s > 
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Naive R implementation of binMeans()
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > binMeans0 <- function(y, x, bx, na.rm = TRUE, count = TRUE, right = FALSE) {
625s +   n_smooth <- length(bx) - 1L
625s +   res <- double(n_smooth)
625s +   counts <- rep(NaN, times = n_smooth)
625s + 
625s +   if (na.rm) {
625s +     keep <- !is.na(x) & !is.na(y)
625s +     x <- x[keep]
625s +     y <- y[keep]
625s +   }
625s + 
625s +   # For each bin...
625s +   for (kk in seq_len(n_smooth)) {
625s +     if (right) {
625s +       idxs <- which(bx[kk] <  x & x <= bx[kk + 1L])
625s +     } else {
625s +       idxs <- which(bx[kk] <= x & x <  bx[kk + 1L])
625s +     }
625s +     y_kk <- y[idxs]
625s +     res[kk] <- mean(y_kk)
625s +     counts[kk] <- length(idxs)
625s +   } # for (kk ...)
625s + 
625s +   if (count) attr(res, "count") <- counts
625s +   res
625s + }
625s > 
625s > 
625s > 
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Case #1
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > x <- 1:100
625s > nx <- length(x)
625s > y <- double(nx)
625s > y[1:25] <- 5
625s > y[51:75] <- -5
625s > y <- y + rnorm(nx)
625s > 
625s > # Bins
625s > bx <- c(0.5, 25.5, 50.5, 75.5, 100.5)
625s > 
625s > y_smooth0 <- binMeans0(y, x = x, bx = bx)
625s > y_smooth <- binMeans(y, x = x, bx = bx)
625s > n_smooth <- binCounts(x, bx = bx)
625s > # Sanity check
625s > stopifnot(all.equal(y_smooth, y_smooth0))
625s > stopifnot(all.equal(attr(y_smooth, "count"), n_smooth))
625s > 
625s > y_smooth0r <- rev(binMeans0(y, x = -x, bx = rev(-bx),
625s +                             count = FALSE, right = TRUE))
625s > y_smoothr <- rev(binMeans(y, x = -x, bx = rev(-bx),
625s +                           count = FALSE, right = TRUE))
625s > # Sanity check
625s > stopifnot(all.equal(y_smooth0r, y_smooth0, check.attributes = FALSE))
625s > stopifnot(all.equal(y_smoothr, y_smooth0r))
625s > 
625s > 
625s > # Integer input
625s > y <- as.integer(y)
625s > y_smooth0 <- binMeans0(y, x = x, bx = bx)
625s > y_smooth <- binMeans(y, x = x, bx = bx)
625s > n_smooth <- binCounts(x, bx = bx)
625s > # Sanity check
625s > stopifnot(is.integer(y),
625s +           all.equal(y_smooth, y_smooth0),
625s +           all.equal(attr(y_smooth, "count"), n_smooth))
625s > 
625s > # Logical input
625s > y <- as.logical(y)
625s > y_smooth0 <- binMeans0(y, x = x, bx = bx)
625s > y_smooth <- binMeans(y, x = x, bx = bx)
625s > n_smooth <- binCounts(x, bx = bx)
625s > # Sanity check
625s > stopifnot(is.logical(y),
625s +           all.equal(y_smooth, y_smooth0),
625s +           all.equal(attr(y_smooth, "count"), n_smooth))
625s > 
625s > 
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Case #2
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > nx <- 1e3
625s > x <- runif(nx)
625s > y <- runif(nx)
625s > 
625s > nb <- 10
625s > bx <- do.call(seq, c(as.list(range(x)), length.out = nb))
625s > bx1 <- c(bx[-1], bx[nb] + 1)
625s > 
625s > y_smooth0 <- binMeans0(y, x = x, bx = bx1)
625s > y_smooth <- binMeans(y, x = x, bx = bx1)
625s > n_smooth <- binCounts(x, bx = bx1)
625s > y_smoothr <- rev(binMeans(y, x = -x, bx = rev(-bx1), right = TRUE))
625s > 
625s > # Sanity check
625s > stopifnot(all.equal(y_smooth, y_smooth0))
625s > stopifnot(all.equal(attr(y_smooth, "count"), n_smooth))
625s > stopifnot(all.equal(y_smoothr, y_smooth, check.attributes = FALSE))
625s > 
625s > 
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Empty bins
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > x <- c(6:8, 16:19)
625s > nx <- length(x)
625s > y <- runif(nx)
625s > bx <- c(0, 5, 10, 15, 20, 25)
625s > y_smooth0 <- binMeans0(y, x = x, bx = bx)
625s > y_smooth <- binMeans(y, x = x, bx = bx)
625s > n_smooth <- binCounts(x, bx = bx)
625s > stopifnot(all.equal(attr(y_smooth, "count"), n_smooth))
625s > stopifnot(all.equal(y_smooth, y_smooth0))
625s > 
625s > 
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Missing values
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > x <- 1:100
625s > x[50] <- NA_integer_
625s > nx <- length(x)
625s > y <- double(nx)
625s > y[1:25] <- 5
625s > y[51:75] <- -5
625s > y[82:92] <- NA_real_
625s > y <- y + rnorm(nx)
625s > 
625s > # Bins
625s > bx <- c(0.5, 25.5, 75.5, 82.5, 100.5)
625s > 
625s > y_smooth0 <- binMeans0(y, x = x, bx = bx)
625s > y_smooth <- binMeans(y, x = x, bx = bx)
625s > # Sanity check
625s > stopifnot(all.equal(y_smooth, y_smooth0))
625s > 
625s > 
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Exception handling
625s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
625s > # Zero bin bounderies (invalid bin definition)
625s > bx <- double(0L)
625s > res <- try(y_smooth <- binMeans(x = 1:5, y = 1:5, bx = bx), silent = TRUE)
625s > stopifnot(inherits(res, "try-error"))
625s > 
625s > # One bin boundery (invalid bin definition)
625s > bx <- double(1L)
625s > res <- try(y_smooth <- binMeans(x = 1:5, y = 1:5, bx = bx), silent = TRUE)
625s > stopifnot(inherits(res, "try-error"))
625s > 
625s 
625s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
625s Copyright (C) 2024 The R Foundation for Statistical Computing
625s Platform: arm-unknown-linux-gnueabihf (32-bit)
625s 
625s R is free software and comes with ABSOLUTELY NO WARRANTY.
625s You are welcome to redistribute it under certain conditions.
625s Type 'license()' or 'licence()' for distribution details.
625s 
625s R is a collaborative project with many contributors.
625s Type 'contributors()' for more information and
625s 'citation()' on how to cite R or R packages in publications.
625s 
625s Type 'demo()' for some demos, 'help()' for on-line help, or
625s 'help.start()' for an HTML browser interface to help.
625s Type 'q()' to quit R.
625s 
626s > library("matrixStats")
626s > 
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > # Naive R implementation of binMeans()
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > binMeans0 <- function(y, x, bx, na.rm = TRUE, count = TRUE, right = FALSE) {
626s +   n_smooth <- length(bx) - 1L
626s +   res <- double(n_smooth)
626s +   counts <- rep(NaN, times = n_smooth)
626s + 
626s +   if (na.rm) {
626s +     keep <- !is.na(x) & !is.na(y)
626s +     x <- x[keep]
626s +     y <- y[keep]
626s +   }
626s + 
626s +   # For each bin...
626s +   for (kk in seq_len(n_smooth)) {
626s +     if (right) {
626s +       idxs <- which(bx[kk] <  x & x <= bx[kk + 1L])
626s +     } else {
626s +       idxs <- which(bx[kk] <= x & x <  bx[kk + 1L])
626s +     }
626s +     y_kk <- y[idxs]
626s +     res[kk] <- mean(y_kk)
626s +     counts[kk] <- length(idxs)
626s +   } # for (kk ...)
626s + 
626s +   if (count) attr(res, "count") <- counts
626s +   res
626s + }
626s > 
626s > 
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > # Subsetted tests
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > source("utils/validateIndicesFramework.R")
626s > y <- runif(6, min = -6, max = 6)
626s > x <- runif(6, min = -6, max = 6)
626s > storage.mode(x) <- "integer"
626s > bx <- c(-6, 0, 3, 4, 10)
626s > for (idxs in index_cases) {
626s +   for (na.rm in c(TRUE, FALSE)) {
626s +     validateIndicesTestVector_w(y, x, idxs,
626s +                                 ftest = binMeans, fsure = binMeans0,
626s +                                 bx = bx, na.rm = na.rm,
626s +                                 count = TRUE, right = FALSE)
626s +     validateIndicesTestVector_w(y, x, idxs,
626s +                                 ftest = binMeans, fsure = binMeans0,
626s +                                 bx = bx, na.rm = na.rm,
626s +                                 count = TRUE, right = TRUE)
626s +   }
626s + }
626s > 
626s 
626s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
626s Copyright (C) 2024 The R Foundation for Statistical Computing
626s Platform: arm-unknown-linux-gnueabihf (32-bit)
626s 
626s R is free software and comes with ABSOLUTELY NO WARRANTY.
626s You are welcome to redistribute it under certain conditions.
626s Type 'license()' or 'licence()' for distribution details.
626s 
626s R is a collaborative project with many contributors.
626s Type 'contributors()' for more information and
626s 'citation()' on how to cite R or R packages in publications.
626s 
626s Type 'demo()' for some demos, 'help()' for on-line help, or
626s 'help.start()' for an HTML browser interface to help.
626s Type 'q()' to quit R.
626s 
626s > library("matrixStats")
626s > 
626s > count_R <- function(x, value = TRUE, na.rm = FALSE, ...) {
626s +   if (is.na(value)) {
626s +     counts <- sum(is.na(x))
626s +   } else {
626s +     counts <- sum(x == value, na.rm = na.rm)
626s +   }
626s +   as.integer(counts)
626s + }
626s > 
626s > 
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > # Data type: integer and numeric
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > for (mode in c("integer", "double")) {
626s +   x <- runif(20 * 5, min = -3, max = 3)
626s +   x[sample.int(length(x), size = 7)] <- 0
626s +   storage.mode(x) <- mode
626s + 
626s +   for (na.rm in c(FALSE, TRUE)) {
626s +     # Count zeros
626s +     n0 <- count_R(x, value = 0, na.rm = na.rm)
626s +     n1 <- count(x, value = 0, na.rm = na.rm)
626s +     stopifnot(identical(n1, n0))
626s +     all <- allValue(x, value = 0, na.rm = na.rm)
626s +     any <- anyValue(x, value = 0, na.rm = na.rm)
626s + 
626s +     # Count NAs
626s +     n0 <- count_R(x, value = NA, na.rm = na.rm)
626s +     n1 <- count(x, value = NA, na.rm = na.rm)
626s +     stopifnot(identical(n1, n0))
626s +     all <- allValue(x, value = NA, na.rm = na.rm)
626s +     any <- anyValue(x, value = NA, na.rm = na.rm)
626s + 
626s +     if (mode == "integer") {
626s +       ux <- unique(as.vector(x))
626s +       n0 <- n1 <- integer(length(x))
626s +       for (value in ux) {
626s +         n0 <- n0 + count_R(x, value = value, na.rm = na.rm)
626s +         n1 <- n1 + count(x, value = value, na.rm = na.rm)
626s +         stopifnot(identical(n1, n0))
626s +       }
626s +       stopifnot(all(n0 == ncol(x)))
626s +     } # if (mode == "integer")
626s + 
626s +   } # for (na.rm ...)
626s + } # for (mode ...)
626s > 
626s > # All NAs
626s > na_list <- list(NA_integer_, NA_real_, NaN)
626s > for (na_value in na_list) {
626s +   x <- rep(na_value, times = 10L)
626s +   for (na.rm in c(FALSE, TRUE)) {
626s +     n0 <- count_R(x, na.rm = na.rm)
626s +     n1 <- count(x, na.rm = na.rm)
626s +     stopifnot(identical(n1, n0))
626s + 
626s +     # Count NAs
626s +     n0 <- count_R(x, value = NA, na.rm = na.rm)
626s +     n1 <- count(x, value = NA, na.rm = na.rm)
626s +     stopifnot(identical(n1, n0))
626s +     any <- anyValue(x, value = NA, na.rm = na.rm)
626s +     all <- allValue(x, value = NA, na.rm = na.rm)
626s +     stopifnot(any)
626s +     stopifnot(all)
626s +   }
626s + } # for (na_value ...)
626s > 
626s > 
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > # Data type: logical
626s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
626s > x <- logical(length = 10L)
626s > x[3:7] <- TRUE
626s > 
626s > # Row/column counts
626s > for (na.rm in c(FALSE, TRUE)) {
626s +   n0 <- count_R(x, na.rm = na.rm)
626s +   n1 <- count(x, na.rm = na.rm)
626s +   stopifnot(identical(n1, n0))
626s + 
626s +   n_true <- count(x, value = TRUE, na.rm = na.rm)
626s +   n_false <- count(x, value = FALSE, na.rm = na.rm)
626s +   stopifnot(n_true + n_false == ncol(x))
626s + 
626s +   # Count NAs
626s +   n0 <- count_R(x, value = NA, na.rm = na.rm)
626s +   n1 <- count(x, value = NA, na.rm = na.rm)
626s +   stopifnot(identical(n1, n0))
626s + }
626s > 
627s 
627s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
627s Copyright (C) 2024 The R Foundation for Statistical Computing
627s Platform: arm-unknown-linux-gnueabihf (32-bit)
627s 
627s R is free software and comes with ABSOLUTELY NO WARRANTY.
627s You are welcome to redistribute it under certain conditions.
627s Type 'license()' or 'licence()' for distribution details.
627s 
627s R is a collaborative project with many contributors.
627s Type 'contributors()' for more information and
627s 'citation()' on how to cite R or R packages in publications.
627s 
627s Type 'demo()' for some demos, 'help()' for on-line help, or
627s 'help.start()' for an HTML browser interface to help.
627s Type 'q()' to quit R.
627s 
627s > library("matrixStats")
627s > 
627s > count_R <- function(x, value = TRUE, na.rm = FALSE, ...) {
627s +   if (is.na(value)) {
627s +     counts <- sum(is.na(x))
627s +   } else {
627s +     counts <- sum(x == value, na.rm = na.rm)
627s +   }
627s +   as.integer(counts)
627s + }
627s > 
627s > 
627s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
627s > # Subsetted tests
627s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
627s > source("utils/validateIndicesFramework.R")
627s > x <- runif(6, min = -3, max = 3)
627s > storage.mode(x) <- "integer"
627s > for (idxs in index_cases) {
627s +   validateIndicesTestVector(x, idxs,
627s +                             ftest = count, fsure = count_R,
627s +                             value = 0, na.rm = TRUE)
627s +   validateIndicesTestVector(x, idxs,
627s +                             ftest = count, fsure = count_R,
627s +                             value = 0, na.rm = FALSE)
627s +   validateIndicesTestVector(x, idxs,
627s +                             ftest = count, fsure = count_R,
627s +                             value = NA_integer_)
627s + }
627s > 
627s 
627s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
627s Copyright (C) 2024 The R Foundation for Statistical Computing
627s Platform: arm-unknown-linux-gnueabihf (32-bit)
627s 
627s R is free software and comes with ABSOLUTELY NO WARRANTY.
627s You are welcome to redistribute it under certain conditions.
627s Type 'license()' or 'licence()' for distribution details.
627s 
627s R is a collaborative project with many contributors.
627s Type 'contributors()' for more information and
627s 'citation()' on how to cite R or R packages in publications.
627s 
627s Type 'demo()' for some demos, 'help()' for on-line help, or
627s 'help.start()' for an HTML browser interface to help.
627s Type 'q()' to quit R.
627s 
627s > library("matrixStats")
627s > 
627s > diff2_R <- function(..., useNames = NA){
627s +   res <- diff(...)
627s +   if (is.na(useNames) || !useNames) names(res) <- NULL
627s +   res
627s + }
627s > 
627s > set.seed(0x42)
627s > 
627s > for (mode in c("integer", "double")) {
627s +   x <- rnorm(10, sd = 5)
627s +   storage.mode(x) <- mode
627s +   str(x)
627s + 
627s +   for (has_na in c(FALSE, TRUE)) {
627s +     for (setNames in c(TRUE, FALSE)) {
627s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
627s +         if (has_na) {
627s +           x[sample(1:10, size = 3)] <- NA
627s +         }
627s +         if (setNames) {
627s +           names(x) <- LETTERS[1:10]
627s +         }
627s +         for (l in 1:3) {
627s +           for (d in 1:4) {
627s +             cat(sprintf("%s: NAs = %s, lag = %d, differences = %d, setNames = %d, useNames = %d\n",
627s +                         mode, has_na, l, d, setNames, useNames))
627s +             y0 <- diff2_R(x, lag = l, differences = d, useNames = useNames)
627s +             str(y0)
627s +             y1 <- diff2(x, lag = l, differences = d, useNames = useNames)
627s +             str(y1)
627s +             stopifnot(identical(y1, y0))
627s +           }
627s +         }  
627s +       }
627s +     }
627s +   } # for (has_na ...)
627s + }
627s  int [1:10] 11 1 2 0 -1 -3 -3 6 0 0
627s integer: NAs = FALSE, lag = 1, differences = 1, setNames = 1, useNames = 1
627s  Named int [1:9] -10 1 -2 -1 -2 0 9 -6 0
627s  - attr(*, "names")= chr [1:9] "B" "C" "D" "E" ...
627s  Named int [1:9] -10 1 -2 -1 -2 0 9 -6 0
627s  - attr(*, "names")= chr [1:9] "B" "C" "D" "E" ...
627s integer: NAs = FALSE, lag = 1, differences = 2, setNames = 1, useNames = 1
627s  Named int [1:8] 11 -3 1 -1 2 9 -15 6
627s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
627s  Named int [1:8] 11 -3 1 -1 2 9 -15 6
627s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
627s integer: NAs = FALSE, lag = 1, differences = 3, setNames = 1, useNames = 1
627s  Named int [1:7] -14 4 -2 3 7 -24 21
627s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
627s  Named int [1:7] -14 4 -2 3 7 -24 21
627s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
627s integer: NAs = FALSE, lag = 1, differences = 4, setNames = 1, useNames = 1
627s  Named int [1:6] 18 -6 5 4 -31 45
627s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
627s  Named int [1:6] 18 -6 5 4 -31 45
627s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
627s integer: NAs = FALSE, lag = 2, differences = 1, setNames = 1, useNames = 1
627s  Named int [1:8] -9 -1 -3 -3 -2 9 3 -6
627s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
627s  Named int [1:8] -9 -1 -3 -3 -2 9 3 -6
627s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
627s integer: NAs = FALSE, lag = 2, differences = 2, setNames = 1, useNames = 1
627s  Named int [1:6] 6 -2 1 12 5 -15
627s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
627s  Named int [1:6] 6 -2 1 12 5 -15
627s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
627s integer: NAs = FALSE, lag = 2, differences = 3, setNames = 1, useNames = 1
627s  Named int [1:4] -5 14 4 -27
627s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
627s  Named int [1:4] -5 14 4 -27
627s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
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628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s double: NAs = FALSE, lag = 1, differences = 3, setNames = 1, useNames = 1
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628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s  Named num [1:7] 4.55 -29.39 32.42 -13.29 14.97 ...
628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s double: NAs = FALSE, lag = 1, differences = 4, setNames = 1, useNames = 1
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628s  Named num [1:6] -33.9 61.8 -45.7 28.3 -37 ...
628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s double: NAs = FALSE, lag = 2, differences = 1, setNames = 1, useNames = 1
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628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s double: NAs = FALSE, lag = 2, differences = 2, setNames = 1, useNames = 1
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628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s  Named num [1:6] -1.33 -23.13 -0.96 19.86 14.44 ...
628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s double: NAs = FALSE, lag = 2, differences = 3, setNames = 1, useNames = 1
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628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s  Named num [1:4] 0.368 42.988 15.396 -29.313
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s double: NAs = FALSE, lag = 2, differences = 4, setNames = 1, useNames = 1
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628s  Named num [1:2] 15 -72.3
628s  - attr(*, "names")= chr [1:2] "I" "J"
628s double: NAs = FALSE, lag = 3, differences = 1, setNames = 1, useNames = 1
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628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s double: NAs = FALSE, lag = 3, differences = 2, setNames = 1, useNames = 1
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628s  Named num [1:4] -23.52 7.92 11.38 23.27
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s double: NAs = FALSE, lag = 3, differences = 3, setNames = 1, useNames = 1
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628s  Named num 46.8
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628s  num [1:9] -2.929 0.673 8.826 -12.409 -1.221 ...
628s double: NAs = FALSE, lag = 1, differences = 2, setNames = 1, useNames = 0
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628s  num [1:8] 3.6 8.15 -21.23 11.19 -2.1 ...
628s double: NAs = FALSE, lag = 1, differences = 3, setNames = 1, useNames = 0
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628s  num [1:7] 4.55 -29.39 32.42 -13.29 14.97 ...
628s double: NAs = FALSE, lag = 1, differences = 4, setNames = 1, useNames = 0
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628s  num [1:6] -33.9 61.8 -45.7 28.3 -37 ...
628s double: NAs = FALSE, lag = 2, differences = 1, setNames = 1, useNames = 0
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628s  num [1:8] -2.26 9.5 -3.58 -13.63 -4.54 ...
628s double: NAs = FALSE, lag = 2, differences = 2, setNames = 1, useNames = 0
628s  num [1:6] -1.33 -23.13 -0.96 19.86 14.44 ...
628s  num [1:6] -1.33 -23.13 -0.96 19.86 14.44 ...
628s double: NAs = FALSE, lag = 2, differences = 3, setNames = 1, useNames = 0
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628s  num [1:4] 0.368 42.988 15.396 -29.313
628s double: NAs = FALSE, lag = 2, differences = 4, setNames = 1, useNames = 0
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628s  num [1:2] 15 -72.3
628s double: NAs = FALSE, lag = 3, differences = 1, setNames = 1, useNames = 0
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628s  num [1:7] 6.57 -2.91 -4.81 -16.95 5.01 ...
628s double: NAs = FALSE, lag = 3, differences = 2, setNames = 1, useNames = 0
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628s  num [1:4] -23.52 7.92 11.38 23.27
628s double: NAs = FALSE, lag = 3, differences = 3, setNames = 1, useNames = 0
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628s double: NAs = FALSE, lag = 1, differences = 2, setNames = 0, useNames = 1
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628s double: NAs = FALSE, lag = 1, differences = 3, setNames = 0, useNames = 1
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628s double: NAs = FALSE, lag = 1, differences = 4, setNames = 0, useNames = 1
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628s  Named num [1:6] -33.9 61.8 -45.7 28.3 -37 ...
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628s double: NAs = FALSE, lag = 2, differences = 1, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s double: NAs = FALSE, lag = 2, differences = 2, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s  Named num [1:6] -1.33 -23.13 -0.96 19.86 14.44 ...
628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s double: NAs = FALSE, lag = 2, differences = 3, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s  Named num [1:4] 0.368 42.988 15.396 -29.313
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s double: NAs = FALSE, lag = 2, differences = 4, setNames = 0, useNames = 1
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628s  Named num [1:2] 15 -72.3
628s  - attr(*, "names")= chr [1:2] "I" "J"
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628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s double: NAs = FALSE, lag = 3, differences = 2, setNames = 0, useNames = 1
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628s  Named num [1:4] -23.52 7.92 11.38 23.27
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
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628s  Named num 46.8
628s  - attr(*, "names")= chr "J"
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628s  num [1:9] -2.929 0.673 8.826 -12.409 -1.221 ...
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628s  num [1:8] 3.6 8.15 -21.23 11.19 -2.1 ...
628s double: NAs = FALSE, lag = 1, differences = 3, setNames = 0, useNames = 0
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628s  num [1:7] 4.55 -29.39 32.42 -13.29 14.97 ...
628s double: NAs = FALSE, lag = 1, differences = 4, setNames = 0, useNames = 0
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628s  num [1:6] -33.9 61.8 -45.7 28.3 -37 ...
628s double: NAs = FALSE, lag = 2, differences = 1, setNames = 0, useNames = 0
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628s  num [1:8] -2.26 9.5 -3.58 -13.63 -4.54 ...
628s double: NAs = FALSE, lag = 2, differences = 2, setNames = 0, useNames = 0
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628s  num [1:6] -1.33 -23.13 -0.96 19.86 14.44 ...
628s double: NAs = FALSE, lag = 2, differences = 3, setNames = 0, useNames = 0
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628s  num [1:4] 0.368 42.988 15.396 -29.313
628s double: NAs = FALSE, lag = 2, differences = 4, setNames = 0, useNames = 0
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628s  num [1:2] 15 -72.3
628s double: NAs = FALSE, lag = 3, differences = 1, setNames = 0, useNames = 0
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628s  num [1:7] 6.57 -2.91 -4.81 -16.95 5.01 ...
628s double: NAs = FALSE, lag = 3, differences = 2, setNames = 0, useNames = 0
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628s  num [1:4] -23.52 7.92 11.38 23.27
628s double: NAs = FALSE, lag = 3, differences = 3, setNames = 0, useNames = 0
628s  num 46.8
628s  num 46.8
628s double: NAs = FALSE, lag = 3, differences = 4, setNames = 0, useNames = 0
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628s  Named num [1:9] -2.929 0.673 8.826 NA NA ...
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628s double: NAs = TRUE, lag = 1, differences = 2, setNames = 1, useNames = 1
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628s double: NAs = TRUE, lag = 1, differences = 3, setNames = 1, useNames = 1
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628s  Named num [1:6] NA NA NA NA NA NA
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628s  Named num [1:8] -2.26 9.5 NA NA NA ...
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628s double: NAs = TRUE, lag = 2, differences = 2, setNames = 1, useNames = 1
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628s double: NAs = TRUE, lag = 2, differences = 3, setNames = 1, useNames = 1
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628s  Named num [1:4] NA NA NA NA
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628s  - attr(*, "names")= chr [1:2] "I" "J"
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628s double: NAs = TRUE, lag = 3, differences = 2, setNames = 1, useNames = 1
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628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s double: NAs = TRUE, lag = 3, differences = 3, setNames = 1, useNames = 1
628s  Named num 46.8
628s  - attr(*, "names")= chr "J"
628s  Named num 46.8
628s  - attr(*, "names")= chr "J"
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628s  - attr(*, "names")= chr(0) 
628s  Named num(0) 
628s  - attr(*, "names")= chr(0) 
628s double: NAs = TRUE, lag = 1, differences = 1, setNames = 1, useNames = 0
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628s  num [1:9] NA 0.673 8.826 NA NA ...
628s double: NAs = TRUE, lag = 1, differences = 2, setNames = 1, useNames = 0
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628s  num [1:8] NA 8.15 NA NA NA ...
628s double: NAs = TRUE, lag = 1, differences = 3, setNames = 1, useNames = 0
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628s  num [1:7] NA NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 1, differences = 4, setNames = 1, useNames = 0
628s  num [1:6] NA NA NA NA NA NA
628s  num [1:6] NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 2, differences = 1, setNames = 1, useNames = 0
628s  num [1:8] NA 9.5 NA NA NA ...
628s  num [1:8] NA 9.5 NA NA NA ...
628s double: NAs = TRUE, lag = 2, differences = 2, setNames = 1, useNames = 0
628s  num [1:6] NA NA NA NA NA NA
628s  num [1:6] NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 2, differences = 3, setNames = 1, useNames = 0
628s  num [1:4] NA NA NA NA
628s  num [1:4] NA NA NA NA
628s double: NAs = TRUE, lag = 2, differences = 4, setNames = 1, useNames = 0
628s  num [1:2] NA NA
628s  num [1:2] NA NA
628s double: NAs = TRUE, lag = 3, differences = 1, setNames = 1, useNames = 0
628s  num [1:7] NA NA NA NA NA NA NA
628s  num [1:7] NA NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 3, differences = 2, setNames = 1, useNames = 0
628s  num [1:4] NA NA NA NA
628s  num [1:4] NA NA NA NA
628s double: NAs = TRUE, lag = 3, differences = 3, setNames = 1, useNames = 0
628s  num NA
628s  num NA
628s double: NAs = TRUE, lag = 3, differences = 4, setNames = 1, useNames = 0
628s  num(0) 
628s  num(0) 
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628s  Named num [1:9] NA 0.673 8.826 NA NA ...
628s  - attr(*, "names")= chr [1:9] "B" "C" "D" "E" ...
628s double: NAs = TRUE, lag = 1, differences = 2, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s  Named num [1:8] NA 8.15 NA NA NA ...
628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s double: NAs = TRUE, lag = 1, differences = 3, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s  Named num [1:7] NA NA NA NA NA NA NA
628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s double: NAs = TRUE, lag = 1, differences = 4, setNames = 0, useNames = 1
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628s  Named num [1:6] NA NA NA NA NA NA
628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s double: NAs = TRUE, lag = 2, differences = 1, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s  Named num [1:8] NA 9.5 NA NA NA ...
628s  - attr(*, "names")= chr [1:8] "C" "D" "E" "F" ...
628s double: NAs = TRUE, lag = 2, differences = 2, setNames = 0, useNames = 1
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628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s  Named num [1:6] NA NA NA NA NA NA
628s  - attr(*, "names")= chr [1:6] "E" "F" "G" "H" ...
628s double: NAs = TRUE, lag = 2, differences = 3, setNames = 0, useNames = 1
628s  Named num [1:4] NA NA NA NA
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s  Named num [1:4] NA NA NA NA
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s double: NAs = TRUE, lag = 2, differences = 4, setNames = 0, useNames = 1
628s  Named num [1:2] NA NA
628s  - attr(*, "names")= chr [1:2] "I" "J"
628s  Named num [1:2] NA NA
628s  - attr(*, "names")= chr [1:2] "I" "J"
628s double: NAs = TRUE, lag = 3, differences = 1, setNames = 0, useNames = 1
628s  Named num [1:7] NA NA NA NA NA NA NA
628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s  Named num [1:7] NA NA NA NA NA NA NA
628s  - attr(*, "names")= chr [1:7] "D" "E" "F" "G" ...
628s double: NAs = TRUE, lag = 3, differences = 2, setNames = 0, useNames = 1
628s  Named num [1:4] NA NA NA NA
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s  Named num [1:4] NA NA NA NA
628s  - attr(*, "names")= chr [1:4] "G" "H" "I" "J"
628s double: NAs = TRUE, lag = 3, differences = 3, setNames = 0, useNames = 1
628s  Named num NA
628s  - attr(*, "names")= chr "J"
628s  Named num NA
628s  - attr(*, "names")= chr "J"
628s double: NAs = TRUE, lag = 3, differences = 4, setNames = 0, useNames = 1
628s  Named num(0) 
628s  - attr(*, "names")= chr(0) 
628s  Named num(0) 
628s  - attr(*, "names")= chr(0) 
628s double: NAs = TRUE, lag = 1, differences = 1, setNames = 0, useNames = 0
628s  num [1:9] NA 0.673 8.826 NA NA ...
628s  num [1:9] NA 0.673 8.826 NA NA ...
628s double: NAs = TRUE, lag = 1, differences = 2, setNames = 0, useNames = 0
628s  num [1:8] NA 8.15 NA NA NA ...
628s  num [1:8] NA 8.15 NA NA NA ...
628s double: NAs = TRUE, lag = 1, differences = 3, setNames = 0, useNames = 0
628s  num [1:7] NA NA NA NA NA NA NA
628s  num [1:7] NA NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 1, differences = 4, setNames = 0, useNames = 0
628s  num [1:6] NA NA NA NA NA NA
628s  num [1:6] NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 2, differences = 1, setNames = 0, useNames = 0
628s  num [1:8] NA 9.5 NA NA NA ...
628s  num [1:8] NA 9.5 NA NA NA ...
628s double: NAs = TRUE, lag = 2, differences = 2, setNames = 0, useNames = 0
628s  num [1:6] NA NA NA NA NA NA
628s  num [1:6] NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 2, differences = 3, setNames = 0, useNames = 0
628s  num [1:4] NA NA NA NA
628s  num [1:4] NA NA NA NA
628s double: NAs = TRUE, lag = 2, differences = 4, setNames = 0, useNames = 0
628s  num [1:2] NA NA
628s  num [1:2] NA NA
628s double: NAs = TRUE, lag = 3, differences = 1, setNames = 0, useNames = 0
628s  num [1:7] NA NA NA NA NA NA NA
628s  num [1:7] NA NA NA NA NA NA NA
628s double: NAs = TRUE, lag = 3, differences = 2, setNames = 0, useNames = 0
628s  num [1:4] NA NA NA NA
628s  num [1:4] NA NA NA NA
628s double: NAs = TRUE, lag = 3, differences = 3, setNames = 0, useNames = 0
628s  num NA
628s  num NA
628s double: NAs = TRUE, lag = 3, differences = 4, setNames = 0, useNames = 0
628s  num(0) 
628s  num(0) 
628s > 
628s 
628s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
628s Copyright (C) 2024 The R Foundation for Statistical Computing
628s Platform: arm-unknown-linux-gnueabihf (32-bit)
628s 
628s R is free software and comes with ABSOLUTELY NO WARRANTY.
628s You are welcome to redistribute it under certain conditions.
628s Type 'license()' or 'licence()' for distribution details.
628s 
628s R is a collaborative project with many contributors.
628s Type 'contributors()' for more information and
628s 'citation()' on how to cite R or R packages in publications.
628s 
628s Type 'demo()' for some demos, 'help()' for on-line help, or
628s 'help.start()' for an HTML browser interface to help.
628s Type 'q()' to quit R.
628s 
628s > library("matrixStats")
628s > 
628s > diff2_R <- function(..., useNames=NA){
628s +   res <- diff(...)
628s +   if (is.na(useNames) || !useNames) names(res) <- NULL
628s +   res
628s + }
628s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
628s > # Subsetted tests
628s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
628s > source("utils/validateIndicesFramework.R")
628s > x <- runif(6, min = -6, max = 6)
628s > for (setNames in c(TRUE, FALSE)) {
628s +   if (setNames) names(x) <- LETTERS[1:6]
628s +   else names(x) <- NULL
628s +   for (l in 1:2) {
628s +     for (d in 1:2) {
628s +       for (idxs in index_cases) {
628s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
628s +           validateIndicesTestVector(x, idxs,
628s +                                     ftest = diff2, fsure = diff2_R,
628s +                                     lag = l, differences = d, useNames = useNames)
628s +         }
628s +       }
628s +     }
628s +   }
628s + }
629s > 
629s 
629s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
629s Copyright (C) 2024 The R Foundation for Statistical Computing
629s Platform: arm-unknown-linux-gnueabihf (32-bit)
629s 
629s R is free software and comes with ABSOLUTELY NO WARRANTY.
629s You are welcome to redistribute it under certain conditions.
629s Type 'license()' or 'licence()' for distribution details.
629s 
629s R is a collaborative project with many contributors.
629s Type 'contributors()' for more information and
629s 'citation()' on how to cite R or R packages in publications.
629s 
629s Type 'demo()' for some demos, 'help()' for on-line help, or
629s 'help.start()' for an HTML browser interface to help.
629s Type 'q()' to quit R.
629s 
629s > library("matrixStats")
629s > 
629s > indexByRow_R1 <- function(dim, idxs = NULL, ...) {
629s +   n <- prod(dim)
629s +   x <- matrix(seq_len(n), nrow = dim[2L], ncol = dim[1L], byrow = TRUE)
629s +   if (!is.null(idxs))
629s +     x <- x[idxs]
629s +   as.vector(x)
629s + }
629s > 
629s > 
629s > indexByRow_R2 <- function(dim, idxs = NULL, ...) {
629s +   n <- prod(dim)
629s +   if (is.null(idxs)) {
629s +     x <- matrix(seq_len(n), nrow = dim[2L], ncol = dim[1L], byrow = TRUE)
629s +     as.vector(x)
629s +   } else {
629s +     idxs <- idxs - 1L
629s +     cols <- idxs %/% dim[2L]
629s +     rows <- idxs  %% dim[2L]
629s +     cols + dim[1L] * rows + 1L
629s +   }
629s + }
629s > 
629s > 
629s > dim <- c(5L, 4L)
629s > x <- matrix(NA_integer_, nrow = dim[1L], ncol = dim[2L])
629s > y <- t(x)
629s > idxs_by_cols <- seq_along(x)
629s > 
629s > # Assign by columns
629s > x[idxs_by_cols] <- idxs_by_cols
629s > print(x)
629s      [,1] [,2] [,3] [,4]
629s [1,]    1    6   11   16
629s [2,]    2    7   12   17
629s [3,]    3    8   13   18
629s [4,]    4    9   14   19
629s [5,]    5   10   15   20
629s > 
629s > # Truth
629s > y0 <- t(x)
629s > idxs_by_rows <- as.vector(y0)
629s > 
629s > # Assert
629s > idxs <- indexByRow(dim)
629s > stopifnot(all.equal(idxs, idxs_by_rows))
629s > y <- x
629s > y[idxs_by_rows] <- idxs
629s > print(y)
629s      [,1] [,2] [,3] [,4]
629s [1,]    1    6   11   16
629s [2,]    2    7   12   17
629s [3,]    3    8   13   18
629s [4,]    4    9   14   19
629s [5,]    5   10   15   20
629s > stopifnot(all(as.vector(y) == as.vector(x)))
629s > 
629s > idxs_R1 <- indexByRow_R1(dim)
629s > stopifnot(all.equal(idxs_R1, idxs_by_rows))
629s > 
629s > idxs_R2 <- indexByRow_R2(dim)
629s > stopifnot(all.equal(idxs_R2, idxs_by_rows))
629s > 
629s > # Assert
629s > idxs_by_cols <- seq(from = 1, to = length(x), by = 3L)
629s > idxs_by_rows <- as.vector(t(x)[idxs_by_cols])
629s > 
629s > idxs <- indexByRow(dim, idxs = idxs_by_cols)
629s > stopifnot(all(idxs == idxs_by_rows))
629s > 
629s > idxs_R1 <- indexByRow_R1(dim, idxs = idxs_by_cols)
629s > stopifnot(all(idxs_R1 == idxs_by_rows))
629s > 
629s > idxs_R2 <- indexByRow_R2(dim, idxs = idxs_by_cols)
629s > stopifnot(all(idxs_R2 == idxs_by_rows))
629s > 
629s > 
629s > ## DEFUNCT: Backward compatibility
629s > res <- tryCatch({
629s +   idxs1 <- indexByRow(x)
629s + }, error = identity)
629s > stopifnot(inherits(res, "error"))
629s > 
629s > 
629s > ## Exceptions:
629s > ## Too large matrices are not supported, which happens
629s > ## when prod(dim) > .Machine$integer.max
629s > dim_too_large <- c(.Machine$integer.max, 2L)
629s > res <- tryCatch({
629s +   idxs <- indexByRow(dim_too_large, idxs = 1L)
629s + }, error = identity)
629s > stopifnot(inherits(res, "error"))
629s > 
629s > ## Non-positive indices are not supported
629s > res <- tryCatch({
629s +   idxs <- indexByRow(c(1,1), idxs = 0L)
629s + }, error = identity)
629s > stopifnot(inherits(res, "error"))
629s > 
629s > res <- tryCatch({
629s +   idxs <- indexByRow(c(1,1), idxs = -1L)
629s + }, error = identity)
629s > stopifnot(inherits(res, "error"))
629s > 
629s 
629s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
629s Copyright (C) 2024 The R Foundation for Statistical Computing
629s Platform: arm-unknown-linux-gnueabihf (32-bit)
629s 
629s R is free software and comes with ABSOLUTELY NO WARRANTY.
629s You are welcome to redistribute it under certain conditions.
629s Type 'license()' or 'licence()' for distribution details.
629s 
629s R is a collaborative project with many contributors.
629s Type 'contributors()' for more information and
629s 'citation()' on how to cite R or R packages in publications.
629s 
629s Type 'demo()' for some demos, 'help()' for on-line help, or
629s 'help.start()' for an HTML browser interface to help.
629s Type 'q()' to quit R.
629s 
630s > library("matrixStats")
630s > library("stats")
630s > 
630s > logSumExp_R <- function(lx, na.rm = FALSE) {
630s +   log(sum(exp(lx), na.rm = na.rm))
630s + }
630s > 
630s > ## R-help thread \emph{'[R] Beyond double-precision?'} on May 9, 2009.
630s > 
630s > for (mode in c("integer", "double")) {
630s +   cat("mode: ", mode, "\n", sep = "")
630s + 
630s +   set.seed(1)
630s +   x <- runif(20, min = 1.0, max = 3.0)
630s +   storage.mode(x) <- mode
630s +   str(x)
630s + 
630s +   ## The logarithm of the harmonic mean
630s +   y0 <- log(1 / mean(1 / x))
630s +   print(y0)  ## -1.600885
630s + 
630s +   lx <- log(x)
630s +   y1 <- log(length(x)) - logSumExp(-lx)
630s +   print(y1)  ## [1] -1.600885
630s + 
630s +   # Sanity check
630s +   stopifnot(all.equal(y1, y0))
630s + 
630s +   y2 <- log(length(x)) - logSumExp_R(-lx)
630s +   # Sanity check
630s +   stopifnot(all.equal(y2, y0))
630s + } # for (mode ...)
630s mode: integer
630s  int [1:20] 1 1 2 2 1 2 2 2 2 1 ...
630s [1] 0.3215836
630s [1] 0.3215836
630s mode: double
630s  num [1:20] 1.53 1.74 2.15 2.82 1.4 ...
630s [1] 0.6673156
630s [1] 0.6673156
630s > 
630s > 
630s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
630s > # Missing values
630s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
630s > ## NA values
630s > lx <- c(1, 2, 3)
630s > lx[2] <- NA_real_
630s > y0 <- logSumExp_R(lx, na.rm = FALSE)
630s > y <- logSumExp(lx, na.rm = FALSE)
630s > print(y)
630s [1] NA
630s > stopifnot(identical(y, NA_real_))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > y0 <- logSumExp_R(lx, na.rm = TRUE)
630s > y <- logSumExp(lx, na.rm = TRUE)
630s > print(y)
630s [1] 3.126928
630s > stopifnot(all.equal(y, y0))
630s > 
630s > ## NaN values
630s > lx <- c(1, 2, 3)
630s > lx[2] <- NaN
630s > y0 <- logSumExp_R(lx, na.rm = FALSE)
630s > y <- logSumExp(lx, na.rm = FALSE)
630s > print(y)
630s [1] NA
630s > stopifnot(identical(y, NA_real_))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > y0 <- logSumExp_R(lx, na.rm = TRUE)
630s > y <- logSumExp(lx, na.rm = TRUE)
630s > print(y)
630s [1] 3.126928
630s > stopifnot(all.equal(y, y0))
630s > 
630s > 
630s > 
630s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
630s > # Corner cases
630s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
630s > ## Zero-length vectors
630s > lx <- numeric(0L)
630s > y0 <- logSumExp_R(lx)
630s > y <- logSumExp(lx)
630s > print(y)
630s [1] -Inf
630s > stopifnot(identical(y, -Inf))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > ## Vectors of length one
630s > lx <- 1.0
630s > y0 <- logSumExp_R(lx)
630s > y <- logSumExp(lx)
630s > print(y)
630s [1] 1
630s > stopifnot(identical(y, lx))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > lx <- NA_real_
630s > y0 <- logSumExp_R(lx, na.rm = TRUE)
630s > y <- logSumExp(lx, na.rm = TRUE)
630s > print(y)
630s [1] -Inf
630s > stopifnot(identical(y, -Inf))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > ## All missing values
630s > lx <- c(NA_real_, NA_real_)
630s > y0 <- logSumExp_R(lx, na.rm = TRUE)
630s > y <- logSumExp(lx, na.rm = TRUE)
630s > print(y)
630s [1] -Inf
630s > stopifnot(identical(y, -Inf))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > lx <- c(NA_real_, NA_real_)
630s > y0 <- logSumExp_R(lx, na.rm = FALSE)
630s > y <- logSumExp(lx, na.rm = FALSE)
630s > print(y)
630s [1] NA
630s > stopifnot(identical(y, NA_real_))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > 
630s > ## +Inf values
630s > lx <- c(1, 2, +Inf)
630s > y0 <- logSumExp_R(lx)
630s > y <- logSumExp(lx)
630s > print(y)
630s [1] Inf
630s > stopifnot(identical(y, +Inf))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > ## First element is a missing value, cf. PR #33
630s > lx <- c(NA_real_, 1)
630s > y0 <- logSumExp_R(lx)
630s > print(y0)
630s [1] NA
630s > y <- logSumExp(lx, na.rm = FALSE)
630s > print(y)
630s [1] NA
630s > stopifnot(identical(y, NA_real_))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > y0 <- logSumExp_R(lx, na.rm = TRUE)
630s > print(y0)
630s [1] 1
630s > y <- logSumExp(lx, na.rm = TRUE)
630s > print(y)
630s [1] 1
630s > stopifnot(identical(y, 1))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > ## Multiple -Inf values, cf. issue #84
630s > lx <- c(-Inf, -Inf)
630s > y0 <- logSumExp_R(lx)
630s > y <- logSumExp(lx)
630s > print(y)
630s [1] -Inf
630s > stopifnot(identical(y, -Inf))
630s > stopifnot(all.equal(y, y0))
630s > 
630s > lx <- c(-Inf, 5, -Inf)
630s > y0 <- logSumExp_R(lx)
630s > y <- logSumExp(lx)
630s > print(y)
630s [1] 5
630s > stopifnot(identical(y, 5))
630s > stopifnot(all.equal(y, y0))
630s > 
630s 
630s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
630s Copyright (C) 2024 The R Foundation for Statistical Computing
630s Platform: arm-unknown-linux-gnueabihf (32-bit)
630s 
630s R is free software and comes with ABSOLUTELY NO WARRANTY.
630s You are welcome to redistribute it under certain conditions.
630s Type 'license()' or 'licence()' for distribution details.
630s 
630s R is a collaborative project with many contributors.
630s Type 'contributors()' for more information and
630s 'citation()' on how to cite R or R packages in publications.
630s 
630s Type 'demo()' for some demos, 'help()' for on-line help, or
630s 'help.start()' for an HTML browser interface to help.
630s Type 'q()' to quit R.
630s 
630s > library("matrixStats")
630s > 
630s > logSumExp_R <- function(lx, na.rm = FALSE) {
630s +   log(sum(exp(lx), na.rm = na.rm))
630s + }
630s > 
630s > 
630s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
630s > # Subsetted tests
630s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
630s > source("utils/validateIndicesFramework.R")
630s > x <- runif(6, min = -6, max = 6)
630s > for (idxs in index_cases) {
630s +   validateIndicesTestVector(x, idxs,
630s +                             ftest = logSumExp, fsure = logSumExp_R,
630s +                             na.rm = FALSE)
630s +   validateIndicesTestVector(x, idxs,
630s +                             ftest = logSumExp, fsure = logSumExp_R,
630s +                             na.rm = TRUE)
630s + }
630s > 
630s 
630s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
630s Copyright (C) 2024 The R Foundation for Statistical Computing
630s Platform: arm-unknown-linux-gnueabihf (32-bit)
630s 
630s R is free software and comes with ABSOLUTELY NO WARRANTY.
630s You are welcome to redistribute it under certain conditions.
630s Type 'license()' or 'licence()' for distribution details.
630s 
630s R is a collaborative project with many contributors.
630s Type 'contributors()' for more information and
630s 'citation()' on how to cite R or R packages in publications.
630s 
630s Type 'demo()' for some demos, 'help()' for on-line help, or
630s 'help.start()' for an HTML browser interface to help.
630s Type 'q()' to quit R.
630s 
631s > library("matrixStats")
631s > 
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > # Consistency checks
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > set.seed(1)
631s > 
631s > mean2_R <- function(x, na.rm = FALSE, idxs = NULL) {
631s +   if (is.null(idxs)) {
631s +     mean(x, na.rm = na.rm)
631s +   } else {
631s +     mean(x[idxs], na.rm = na.rm)
631s +   }
631s + } # mean2_R()
631s > 
631s > 
631s > cat("Consistency checks:\n")
631s Consistency checks:
631s > for (kk in 1:20) {
631s +   cat("Random test #", kk, "\n", sep = "")
631s + 
631s +   # Simulate data in a matrix of any shape
631s +   n <- sample(100L, size = 1L)
631s +   x <- rnorm(n, sd = 100)
631s + 
631s +   # Add NAs?
631s +   if ((kk %% 4) %in% c(3, 0)) {
631s +     cat("Adding NAs\n")
631s +     nna <- sample(n, size = 1L)
631s +     na_values <- c(NA_real_, NaN)
631s +     t <- sample(na_values, size = nna, replace = TRUE)
631s +     x[sample(length(x), size = nna)] <- t
631s +   }
631s + 
631s +   # Integer or double?
631s +   if ((kk %% 4) %in% c(2, 0)) {
631s +     cat("Coercing to integers\n")
631s +     storage.mode(x) <- "integer"
631s +   }
631s + 
631s +   na.rm <- sample(c(TRUE, FALSE), size = 1L)
631s + 
631s +   # Sum over all
631s +   y0 <- mean2_R(x, na.rm = na.rm)
631s +   y1 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(all.equal(y1, y0))
631s + 
631s +   # Sum over subset
631s +   nidxs <- sample(n, size = 1L)
631s +   idxs <- sample(n, size = nidxs)
631s +   y0 <- mean2_R(x, na.rm = na.rm, idxs = idxs)
631s +   y1 <- mean2(x, na.rm = na.rm, idxs = idxs)
631s +   stopifnot(all.equal(y1, y0))
631s + 
631s +   if (storage.mode(x) == "integer") {
631s +     storage.mode(x) <- "logical"
631s +     
631s +     y0 <- mean2_R(x, na.rm = na.rm)
631s +     y1 <- mean2(x, na.rm = na.rm)
631s +     stopifnot(all.equal(y1, y0))
631s +     
631s +     y0 <- mean2_R(x, na.rm = na.rm, idxs = idxs)
631s +     y1 <- mean2(x, na.rm = na.rm, idxs = idxs)
631s +     stopifnot(all.equal(y1, y0))
631s +   }
631s + } # for (kk ...)
631s Random test #1
631s Random test #2
631s Coercing to integers
631s Random test #3
631s Adding NAs
631s Random test #4
631s Adding NAs
631s Coercing to integers
631s Random test #5
631s Random test #6
631s Coercing to integers
631s Random test #7
631s Adding NAs
631s Random test #8
631s Adding NAs
631s Coercing to integers
631s Random test #9
631s Random test #10
631s Coercing to integers
631s Random test #11
631s Adding NAs
631s Random test #12
631s Adding NAs
631s Coercing to integers
631s Random test #13
631s Random test #14
631s Coercing to integers
631s Random test #15
631s Adding NAs
631s Random test #16
631s Adding NAs
631s Coercing to integers
631s Random test #17
631s Random test #18
631s Coercing to integers
631s Random test #19
631s Adding NAs
631s Random test #20
631s Adding NAs
631s Coercing to integers
631s > 
631s > 
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > # Special cases
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > for (na.rm in c(FALSE, TRUE)) {
631s +   # Averaging over zero elements (integers)
631s +   x <- integer(0)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   x <- 1:5
631s +   idxs <- integer(0)
631s +   s1 <- mean(x[idxs], na.rm = na.rm)
631s +   s2 <- mean2(x, idxs = idxs, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over NA_integer_:s
631s +   x <- rep(NA_integer_, times = 5L)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   x <- rep(NA_integer_, times = 5L)
631s +   idxs <- 1:3
631s +   s1 <- mean(x[idxs], na.rm = na.rm)
631s +   s2 <- mean2(x, idxs = idxs, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s + 
631s +   # Averaging over zero elements (doubles)
631s +   x <- double(0)
631s +   s1 <- mean(x)
631s +   s2 <- mean2(x)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   x <- as.double(1:10)
631s +   idxs <- integer(0)
631s +   s1 <- mean(x[idxs])
631s +   s2 <- mean2(x, idxs = idxs)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over NA_real_:s
631s +   x <- rep(NA_real_, times = 5L)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   x <- rep(NA_real_, times = 5L)
631s +   idxs <- 1:3
631s +   s1 <- mean(x[idxs], na.rm = na.rm)
631s +   s2 <- mean2(x, idxs = idxs, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over -Inf:s
631s +   x <- rep(-Inf, times = 3L)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over +Inf:s
631s +   x <- rep(+Inf, times = 3L)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over mix of -Inf:s and +Inf:s
631s +   x <- rep(c(-Inf, +Inf), times = 3L)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over mix of -Inf:s and +Inf:s and numerics
631s +   x <- rep(c(-Inf, +Inf, 3.14), times = 2L)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   stopifnot(identical(s1, s2))
631s + 
631s +   # Averaging over mix of NaN, NA, +Inf, and numerics
631s +   x <- c(NaN, NA, +Inf, 3.14)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   if (na.rm) {
631s +     stopifnot(identical(s2, s1))
631s +   } else {
631s +     stopifnot(is.na(s1), is.na(s2))
631s +     ## NOTE, due to compiler optimization, it is not guaranteed that NA is
631s +     ## returned here (as one would expect). NaN might very well be returned,
631s +     ## when both NA and NaN are involved.  This is an accepted feature in R,
631s +     ## which is documented in help("is.nan").  See also
631s +     ## https://stat.ethz.ch/pipermail/r-devel/2017-April/074009.html.
631s +     ## Thus, we cannot guarantee that s1 is identical to s0.
631s +   }
631s + 
631s +   # Averaging over mix of NaN, NA_real_, +Inf, and numerics
631s +   x <- c(NA_real_, NaN, +Inf, 3.14)
631s +   s1 <- mean(x, na.rm = na.rm)
631s +   s2 <- mean2(x, na.rm = na.rm)
631s +   if (na.rm) {
631s +     stopifnot(identical(s2, s1))
631s +   } else {
631s +     stopifnot(is.na(s1), is.na(s2))
631s +     ## NOTE, due to compiler optimization, it is not guaranteed that NA is
631s +     ## returned here (as one would expect). NaN might very well be returned,
631s +     ## when both NA and NaN are involved.  This is an accepted feature in R,
631s +     ## which is documented in help("is.nan").  See also
631s +     ## https://stat.ethz.ch/pipermail/r-devel/2017-April/074009.html.
631s +     ## Thus, we cannot guarantee that s1 is identical to s0.
631s +   }
631s + }
631s > 
631s > 
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > # Argument 'idxs'
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > x <- 1:5
631s > idxs_list <- list(
631s +   integer = 1:3,
631s +   double  = as.double(1:3),
631s +   logical = (x <= 3)
631s + )
631s > 
631s > for (idxs in idxs_list) {
631s +   cat("idxs:\n")
631s +   str(idxs)
631s +   s1 <- mean(x[idxs], na.rm = TRUE)
631s +   s2 <- mean2(x, idxs = idxs, na.rm = TRUE)
631s +   stopifnot(identical(s1, s2))
631s + }
631s idxs:
631s  int [1:3] 1 2 3
631s idxs:
631s  num [1:3] 1 2 3
631s idxs:
631s  logi [1:5] TRUE TRUE TRUE FALSE FALSE
631s > 
631s 
631s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
631s Copyright (C) 2024 The R Foundation for Statistical Computing
631s Platform: arm-unknown-linux-gnueabihf (32-bit)
631s 
631s R is free software and comes with ABSOLUTELY NO WARRANTY.
631s You are welcome to redistribute it under certain conditions.
631s Type 'license()' or 'licence()' for distribution details.
631s 
631s R is a collaborative project with many contributors.
631s Type 'contributors()' for more information and
631s 'citation()' on how to cite R or R packages in publications.
631s 
631s Type 'demo()' for some demos, 'help()' for on-line help, or
631s 'help.start()' for an HTML browser interface to help.
631s Type 'q()' to quit R.
631s 
631s > library("matrixStats")
631s > 
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > # Subsetted tests
631s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
631s > source("utils/validateIndicesFramework.R")
631s > x <- runif(6, min = -6, max = 6)
631s > storage.mode(x) <- "integer"
631s > for (idxs in index_cases) {
631s +   validateIndicesTestVector(x, idxs,
631s +                             ftest = mean2, fsure = mean,
631s +                             na.rm = FALSE)
631s +   validateIndicesTestVector(x, idxs,
631s +                             ftest = mean2, fsure = mean,
631s +                             na.rm = TRUE)
631s + }
631s > 
632s 
632s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
632s Copyright (C) 2024 The R Foundation for Statistical Computing
632s Platform: arm-unknown-linux-gnueabihf (32-bit)
632s 
632s R is free software and comes with ABSOLUTELY NO WARRANTY.
632s You are welcome to redistribute it under certain conditions.
632s Type 'license()' or 'licence()' for distribution details.
632s 
632s R is a collaborative project with many contributors.
632s Type 'contributors()' for more information and
632s 'citation()' on how to cite R or R packages in publications.
632s 
632s Type 'demo()' for some demos, 'help()' for on-line help, or
632s 'help.start()' for an HTML browser interface to help.
632s Type 'q()' to quit R.
632s 
632s > library("matrixStats")
632s > 
632s > for (mode in c("integer", "double")) {
632s +   cat("mode: ", mode, "\n", sep = "")
632s + 
632s +   # Empty vector
632s +   x <- 0
632s +   storage.mode(x) <- mode
632s +   y <- prod(x, na.rm = TRUE)
632s +   print(y)
632s +   z <- product(x, na.rm = TRUE)
632s +   print(z)
632s +   stopifnot(all.equal(z, y))
632s + 
632s +   # Test negative values
632s +   x <- c(1, -4, 2)
632s +   storage.mode(x) <- mode
632s +   y <- prod(x, na.rm = TRUE)
632s +   print(y)
632s +   z <- product(x, na.rm = TRUE)
632s +   print(z)
632s +   stopifnot(all.equal(z, y))
632s + 
632s +   # Test missing values
632s +   x <- c(1, NA, NaN, 2)
632s +   storage.mode(x) <- mode
632s +   y <- prod(x, na.rm = TRUE)
632s +   print(y)
632s +   z <- product(x, na.rm = TRUE)
632s +   print(z)
632s +   stopifnot(all.equal(z, y))
632s + 
632s +   x <- c(1, NA, NaN, 2)
632s +   storage.mode(x) <- mode
632s +   y <- prod(x, na.rm = FALSE)
632s +   print(y)
632s +   z <- product(x, na.rm = FALSE)
632s +   print(z)
632s +   stopifnot(all(is.na(z), is.na(y)))
632s + 
632s +   x <- c(1, NaN, 2)
632s +   storage.mode(x) <- mode
632s +   y <- prod(x, na.rm = FALSE)
632s +   print(y)
632s +   stopifnot(is.na(y))
632s +   z <- product(x, na.rm = FALSE)
632s +   print(z)
632s +   stopifnot(is.na(z))
632s + 
632s + } # for (mode ...)
632s mode: integer
632s [1] 0
632s [1] 0
632s [1] -8
632s [1] -8
632s [1] 2
632s [1] 2
632s [1] NA
632s [1] NA
632s [1] NA
632s [1] NA
632s mode: double
632s [1] 0
632s [1] 0
632s [1] -8
632s [1] -8
632s [1] 2
632s [1] 2
632s [1] NA
632s [1] NA
632s [1] NaN
632s [1] NA
632s > 
632s > 
632s > # NAs following 0s
632s > x <- c(0L, NA_integer_)
632s > y <- prod(x, na.rm = FALSE)
632s > print(y)
632s [1] NA
632s > z <- product(x, na.rm = FALSE)
632s > print(z)
632s [1] NA
632s > stopifnot(identical(z, y))
632s > 
632s 
632s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
632s Copyright (C) 2024 The R Foundation for Statistical Computing
632s Platform: arm-unknown-linux-gnueabihf (32-bit)
632s 
632s R is free software and comes with ABSOLUTELY NO WARRANTY.
632s You are welcome to redistribute it under certain conditions.
632s Type 'license()' or 'licence()' for distribution details.
632s 
632s R is a collaborative project with many contributors.
632s Type 'contributors()' for more information and
632s 'citation()' on how to cite R or R packages in publications.
632s 
632s Type 'demo()' for some demos, 'help()' for on-line help, or
632s 'help.start()' for an HTML browser interface to help.
632s Type 'q()' to quit R.
632s 
632s > library("matrixStats")
632s > 
632s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
632s > # Subsetted tests
632s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
632s > source("utils/validateIndicesFramework.R")
632s > x <- runif(6, min = -6, max = 6)
632s > storage.mode(x) <- "integer"
632s > for (idxs in index_cases) {
632s +   validateIndicesTestVector(x, idxs,
632s +                             ftest = product, fsure = prod,
632s +                             na.rm = TRUE)
632s +   validateIndicesTestVector(x, idxs,
632s +                             ftest = product, fsure = prod,
632s +                             na.rm = FALSE)
632s + }
632s > 
633s 
633s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
633s Copyright (C) 2024 The R Foundation for Statistical Computing
633s Platform: arm-unknown-linux-gnueabihf (32-bit)
633s 
633s R is free software and comes with ABSOLUTELY NO WARRANTY.
633s You are welcome to redistribute it under certain conditions.
633s Type 'license()' or 'licence()' for distribution details.
633s 
633s R is a collaborative project with many contributors.
633s Type 'contributors()' for more information and
633s 'citation()' on how to cite R or R packages in publications.
633s 
633s Type 'demo()' for some demos, 'help()' for on-line help, or
633s 'help.start()' for an HTML browser interface to help.
633s Type 'q()' to quit R.
633s 
633s > library("matrixStats")
633s > library("utils")  ## utils::str
633s > 
633s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
633s > # Local functions
633s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
633s > psortKM_R <- function(x, k, m) {
633s +   x <- sort(x)
633s +   x[(k - m + 1):k]
633s + }
633s > 
633s > psortKM_R2 <- function(x, k, m) {
633s +   partial <- (k - m + 1):k
633s +   x <- sort.int(x, partial = partial)
633s +   x[partial]
633s + }
633s > 
633s > 
633s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
633s > # Consistency checks
633s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
633s > set.seed(1)
633s > 
633s > cat("Consistency checks:\n")
633s Consistency checks:
633s > x <- 1:30
633s > x[18:20] <- 20
633s > y <- sample(x)
633s > cat("x:\n")
633s x:
633s > str(x)
633s  num [1:30] 1 2 3 4 5 6 7 8 9 10 ...
633s > cat("sample(x):\n")
633s sample(x):
633s > str(y)
633s  num [1:30] 25 4 7 1 2 23 11 14 20 20 ...
633s > 
633s > for (k in c(1L, 2L, 20L, 21L, length(x))) {
633s +   for (m in 1:min(5L, k)) {
633s +     px0 <- psortKM_R(x, k = k, m = m)
633s +     px0b <- psortKM_R2(x, k = k, m = m)
633s +     stopifnot(identical(px0b, px0))
633s +     px1 <- matrixStats:::.psortKM(x, k = k, m = m)
633s +     cat(sprintf(".psortKM(x, k = %d, m = %d):\n", k, m))
633s +     print(px1)
633s +     stopifnot(identical(px1, px0))
633s + 
633s +     py0 <- psortKM_R(y, k = k, m = m)
633s +     py0b <- psortKM_R2(y, k = k, m = m)
633s +     stopifnot(identical(py0b, py0))
633s +     py1 <- matrixStats:::.psortKM(y, k = k, m = m)
633s +     cat(sprintf(".psortKM(y, k = %d, m = %d):\n", k, m))
633s +     print(py1)
633s +     stopifnot(identical(py1, py0))
633s +     stopifnot(identical(py1, px1))
633s +   } # for (m ...)
633s + } # for (k ...)
633s .psortKM(x, k = 1, m = 1):
633s [1] 1
633s .psortKM(y, k = 1, m = 1):
633s [1] 1
633s .psortKM(x, k = 2, m = 1):
633s [1] 2
633s .psortKM(y, k = 2, m = 1):
633s [1] 2
633s .psortKM(x, k = 2, m = 2):
633s [1] 1 2
633s .psortKM(y, k = 2, m = 2):
633s [1] 1 2
633s .psortKM(x, k = 20, m = 1):
633s [1] 20
633s .psortKM(y, k = 20, m = 1):
633s [1] 20
633s .psortKM(x, k = 20, m = 2):
633s [1] 20 20
633s .psortKM(y, k = 20, m = 2):
633s [1] 20 20
633s .psortKM(x, k = 20, m = 3):
633s [1] 20 20 20
633s .psortKM(y, k = 20, m = 3):
633s [1] 20 20 20
633s .psortKM(x, k = 20, m = 4):
633s [1] 17 20 20 20
633s .psortKM(y, k = 20, m = 4):
633s [1] 17 20 20 20
633s .psortKM(x, k = 20, m = 5):
633s [1] 16 17 20 20 20
633s .psortKM(y, k = 20, m = 5):
633s [1] 16 17 20 20 20
633s .psortKM(x, k = 21, m = 1):
633s [1] 21
633s .psortKM(y, k = 21, m = 1):
633s [1] 21
633s .psortKM(x, k = 21, m = 2):
633s [1] 20 21
633s .psortKM(y, k = 21, m = 2):
633s [1] 20 21
633s .psortKM(x, k = 21, m = 3):
633s [1] 20 20 21
633s .psortKM(y, k = 21, m = 3):
633s [1] 20 20 21
633s .psortKM(x, k = 21, m = 4):
633s [1] 20 20 20 21
633s .psortKM(y, k = 21, m = 4):
633s [1] 20 20 20 21
633s .psortKM(x, k = 21, m = 5):
633s [1] 17 20 20 20 21
633s .psortKM(y, k = 21, m = 5):
633s [1] 17 20 20 20 21
633s .psortKM(x, k = 30, m = 1):
633s [1] 30
633s .psortKM(y, k = 30, m = 1):
633s [1] 30
633s .psortKM(x, k = 30, m = 2):
633s [1] 29 30
633s .psortKM(y, k = 30, m = 2):
633s [1] 29 30
633s .psortKM(x, k = 30, m = 3):
633s [1] 28 29 30
633s .psortKM(y, k = 30, m = 3):
633s [1] 28 29 30
633s .psortKM(x, k = 30, m = 4):
633s [1] 27 28 29 30
633s .psortKM(y, k = 30, m = 4):
633s [1] 27 28 29 30
633s .psortKM(x, k = 30, m = 5):
633s [1] 26 27 28 29 30
633s .psortKM(y, k = 30, m = 5):
633s [1] 26 27 28 29 30
633s > 
633s 
633s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
633s Copyright (C) 2024 The R Foundation for Statistical Computing
633s Platform: arm-unknown-linux-gnueabihf (32-bit)
633s 
633s R is free software and comes with ABSOLUTELY NO WARRANTY.
633s You are welcome to redistribute it under certain conditions.
633s Type 'license()' or 'licence()' for distribution details.
633s 
633s R is a collaborative project with many contributors.
633s Type 'contributors()' for more information and
633s 'citation()' on how to cite R or R packages in publications.
633s 
633s Type 'demo()' for some demos, 'help()' for on-line help, or
633s 'help.start()' for an HTML browser interface to help.
633s Type 'q()' to quit R.
633s 
633s > library("matrixStats")
633s > 
633s > rowAlls_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
633s +   if (is.na(value)) {
633s +     res <- apply(is.na(x), MARGIN = 1L, FUN = all, na.rm = na.rm)
633s +   } else {
633s +     y <- x == value
633s +     
633s +     # Preserve dimnames attribute
633s +     dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0)
633s +     if (!isTRUE(all.equal(dim(y), dim))) {
633s +       dim(y) <- dim
633s +       dimnames(y) <- dimnames(x)
633s +     }
633s +     
633s +     res <- apply(y, MARGIN = 1L, FUN = all, na.rm = na.rm)
633s +   }
633s +   if (is.na(useNames) || !useNames) names(res) <- NULL
633s +   res
633s + }
633s > 
633s > rowAnys_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
633s +   if (is.na(value)) {
633s +     res <- apply(is.na(x), MARGIN = 1L, FUN = any, na.rm = na.rm)
633s +   } else {
633s +     y <- x == value
633s +     
633s +     # Preserve dimnames attribute
633s +     dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0)
633s +     if (!isTRUE(all.equal(dim(y), dim))) {
633s +       dim(y) <- dim
633s +       dimnames(y) <- dimnames(x)
633s +     }
633s +     
633s +     res <- apply(y, MARGIN = 1L, FUN = any, na.rm = na.rm)
633s +   }
633s +   if (is.na(useNames) || !useNames) names(res) <- NULL
633s +   res
633s + }
633s > 
633s > rowAnyMissings_R <- function(x, ..., useNames = NA) {
633s +   res <- apply(x, MARGIN = 1L, FUN = anyMissing)
633s +   if (is.na(useNames) || !useNames) names(res) <- NULL
633s +   res
633s + }
633s > 
633s > 
633s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
633s > # Data type: logical
633s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
633s > x <- matrix(FALSE, nrow = 10L, ncol = 4L)
633s > x[7:8, 2:3] <- TRUE
633s > x[1:3, ] <- TRUE
633s > x[, 1] <- TRUE
633s > x[4, ] <- FALSE
633s > x[, 4] <- FALSE
633s > x[2, ] <- FALSE
633s > x[3, ] <- TRUE
633s > 
633s > # To check names attribute
633s > dimnames <- list(letters[1:10], LETTERS[1:4])
633s > 
633s > for (kk in 1:3) {
633s +   if (kk == 2) {
633s +     x[2, 2] <- NA
633s +   } else if (kk == 3) {
633s +     x[, 2] <- NA
633s +     x[2, ] <- NA
633s +   }
633s + 
633s +   # Test with and without dimnames on x
633s +   for (setDimnames in c(TRUE, FALSE)) {
633s +     dimnames(x) <- if (setDimnames) dimnames else NULL
633s + 
633s +     for (na.rm in c(FALSE, TRUE)) {
633s +       # Check names attribute
633s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
633s +         m0 <- rowAlls_R(x, na.rm = na.rm, useNames = useNames)
633s +         m1 <- rowAlls(x, na.rm = na.rm, useNames = useNames)
633s +         m2 <- colAlls(t(x), na.rm = na.rm, useNames = useNames)
633s +         str(list("all()", m0 = m0, m1 = m1, m2 = m2))
633s +         stopifnot(identical(m1, m0))
633s +         stopifnot(identical(m2, m0))        
633s + 
633s +         m0 <- rowAnys_R(x, na.rm = na.rm, useNames = useNames)
633s +         m1 <- rowAnys(x, na.rm = na.rm, useNames = useNames)
633s +         m2 <- colAnys(t(x), na.rm = na.rm, useNames = useNames)
633s +         str(list("any()", m0 = m0, m1 = m1, m2 = m2))
633s +         stopifnot(identical(m1, m0))
633s +         stopifnot(identical(m2, m0))
633s +         
633s +         m0 <- rowAnyMissings_R(x, useNames = useNames)
633s +         m1 <- rowAnyMissings(x, useNames = useNames)
633s +         m2 <- colAnyMissings(t(x), useNames = useNames)
633s +         str(list("anyMissing()", m0 = m0, m1 = m1, m2 = m2))
633s +         stopifnot(identical(m1, m0))
633s +         stopifnot(identical(m2, m0))
633s +       }
633s +     }
633s +   }
633s + } # for (kk ...)
634s List of 4
634s  $   : chr "all()"
634s  $ m0: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: Named logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: Named logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: Named logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: Named logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: Named logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE NA TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE FALSE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE FALSE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: Named logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: Named logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: Named logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: Named logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: Named logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m1: Named logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s  $ m2: Named logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s   ..- attr(*, "names")= chr [1:10] "a" "b" "c" "d" ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE NA NA FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE NA TRUE NA TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s List of 4
634s  $   : chr "all()"
634s  $ m0: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s  $ m1: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s  $ m2: logi [1:10] FALSE TRUE TRUE FALSE FALSE FALSE ...
634s List of 4
634s  $   : chr "any()"
634s  $ m0: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE FALSE TRUE FALSE TRUE TRUE ...
634s List of 4
634s  $   : chr "anyMissing()"
634s  $ m0: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m1: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s  $ m2: logi [1:10] TRUE TRUE TRUE TRUE TRUE TRUE ...
634s > 
634s > 
634s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
634s > # Data type: integer
634s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
634s > x <- matrix(rep(1:6, length.out = 4 * 5), nrow = 4L, ncol = 5L)
634s > x[2, ] <- 7L
634s > x[3, 1] <- 7L
634s > x[2:3, 3:4] <- NA_integer_
634s > 
634s > # To check names attribute
634s > dimnames <- list(letters[1:4], LETTERS[1:5])
634s > 
634s > # Row/column counts
634s > value <- 7L
634s > 
634s > # Test with and without dimnames on x
634s > for (setDimnames in c(TRUE, FALSE)) {
634s +   dimnames(x) <- if (setDimnames) dimnames else NULL
634s +   for (na.rm in c(FALSE, TRUE)) {
634s +     # Check names attribute
634s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
634s +       r0 <- rowAlls_R(x, value = value, na.rm = na.rm, useNames = useNames)
634s +       r1 <- rowAlls(x, value = value, na.rm = na.rm, useNames = useNames)
634s +       r2 <- colAlls(t(x), value = value, na.rm = na.rm, useNames = useNames)
634s +       stopifnot(identical(r1, r0))
634s +       stopifnot(identical(r2, r1))
634s +       if (!is.na(useNames) && !useNames && !setDimnames) {
634s +         for (rr in seq_len(nrow(x))) {
634s +           c <- allValue(x[rr, ], value = value, na.rm = na.rm)
634s +           stopifnot(identical(c, r1[rr]))
634s +           c <- allValue(x[rr, ], value = value, na.rm = na.rm)
634s +           stopifnot(identical(c, r1[rr]))
634s +         }
634s +       }
634s + 
634s +       r0 <- rowAnys_R(x, value = value, na.rm = na.rm, useNames = useNames)
634s +       r1 <- rowAnys(x, value = value, na.rm = na.rm, useNames = useNames)
634s +       r2 <- colAnys(t(x), value = value, na.rm = na.rm, useNames = useNames)
634s +       stopifnot(identical(r1, r0))
634s +       stopifnot(identical(r2, r1))        
634s +       if (!is.na(useNames) && !useNames && !setDimnames) {
634s +         for (rr in seq_len(nrow(x))) {
634s +           c <- anyValue(x[rr, ], value = value, na.rm = na.rm)
634s +           stopifnot(identical(c, r1[rr]))
634s +           c <- anyValue(x[rr, ], value = value, na.rm = na.rm)
634s +           stopifnot(identical(c, r1[rr]))
634s +         }
634s +       }
634s +     }
634s +   }
634s + }
634s > 
634s > 
634s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
634s > # rowAlls(x) et al. on numeric 'x' with logical 'value'
634s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
634s > x <- matrix(0, nrow = 4L, ncol = 5L)
634s > x[2:4, 2] <- (1:3) / 4
634s > x[2, 2:4] <- (1:3) / 4
634s > x[3:4, 3] <- (3:4) / 4
634s > x[3, 3:4] <- (3:4) / 4
634s > x[1:4, 5] <- (1:4) / 5
634s > x[4, 4] <- NA_real_
634s > 
634s > # To check names attribute
634s > dimnames <- list(letters[1:4], LETTERS[1:5])
634s > 
634s > for (value in c(TRUE, FALSE)) {
634s +   for (na.rm in c(FALSE, TRUE)) {
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 1L, FUN = function(e) any(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- rowAnys(x, na.rm = na.rm, value = value)
634s +     stopifnot(identical(y, y0))
634s +     # Check names attribute
634s +     dimnames(x) <- dimnames
634s +     y <- rowAnys(x, na.rm = na.rm, value = value, useNames = FALSE)
634s +     stopifnot(all.equal(y, y0))
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 1L, FUN = function(e) any(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- rowAnys(x, na.rm = na.rm, value = value, useNames = TRUE)
634s +     stopifnot(all.equal(y, y0))
634s +     dimnames(x) <- NULL
634s +   
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 2L, FUN = function(e) any(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- colAnys(x, na.rm = na.rm, value = value)
634s +     stopifnot(identical(y, y0))
634s +     # Check names attribute
634s +     dimnames(x) <- dimnames
634s +     y <- colAnys(x, na.rm = na.rm, value = value, useNames = FALSE)
634s +     stopifnot(all.equal(y, y0))
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 2L, FUN = function(e) any(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- colAnys(x, na.rm = na.rm, value = value, useNames = TRUE)
634s +     stopifnot(all.equal(y, y0))
634s +     dimnames(x) <- NULL
634s +   
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 1L, FUN = function(e) all(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- rowAlls(x, na.rm = na.rm, value = value)
634s +     stopifnot(identical(y, y0))
634s +     # Check names attribute
634s +     dimnames(x) <- dimnames
634s +     y <- rowAlls(x, na.rm = na.rm, value = value, useNames = FALSE)
634s +     stopifnot(all.equal(y, y0))  
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 1L, FUN = function(e) all(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- rowAlls(x, na.rm = na.rm, value = value, useNames = TRUE)
634s +     stopifnot(all.equal(y, y0))    
634s +     dimnames(x) <- NULL
634s +   
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 2L, FUN = function(e) all(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- colAlls(x, na.rm = na.rm, value = value)
634s +     stopifnot(identical(y, y0))
634s +     print(y0)
634s +     # Check names attribute
634s +     dimnames(x) <- dimnames
634s +     y <- colAlls(x, na.rm = na.rm, value = value, useNames = FALSE)
634s +     stopifnot(all.equal(y, y0))     
634s +     y0 <- suppressWarnings(apply(x, MARGIN = 2L, FUN = function(e) all(as.logical(e) == value, na.rm = na.rm)))
634s +     y <- colAlls(x, na.rm = na.rm, value = value, useNames = TRUE)
634s +     stopifnot(all.equal(y, y0))     
634s +     dimnames(x) <- NULL
634s +   } ## for (na.rm ...)
634s + } ## for(value ...)
634s [1] FALSE FALSE FALSE FALSE  TRUE
634s [1] FALSE FALSE FALSE FALSE  TRUE
634s [1]  TRUE FALSE FALSE FALSE FALSE
634s [1]  TRUE FALSE FALSE FALSE FALSE
634s > 
634s > 
634s > 
634s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
634s > # Data type: character (not sure if this should be supported)
634s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
634s > all_R <- function(x, value = TRUE, ...) {
634s +   if (is.na(value)) {
634s +     all(is.na(x), ...)
634s +   } else {
634s +     all(x == value, ...)
634s +   }
634s + }
634s > 
634s > any_R <- function(x, value = TRUE, ...) {
634s +   if (is.na(value)) {
634s +     any(is.na(x), ...)
634s +   } else {
634s +     any(x == value, ...)
634s +   }
634s + }
634s > 
634s > x <- matrix(rep(letters, length.out = 10 * 5), nrow = 10L, ncol = 5L)
634s > x[2, ] <- "g"
634s > x[2:4, 3:4] <- NA_character_
634s > 
634s > # To check names attribute
634s > dimnames <- list(letters[1:10], LETTERS[1:5])
634s > 
634s > # Test with and without dimnames on x
634s > for (setDimnames in c(TRUE, FALSE)) {
634s +   dimnames(x) <- if (setDimnames) dimnames else NULL
634s + 
634s +   # Row/column counts
634s +   for (value in c("g", NA_character_)) {
634s +     for (na.rm in c(FALSE, TRUE)) {
634s +       # Check names attribute
634s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
634s +         r0 <- rowAlls_R(x, value = value, na.rm = na.rm, useNames = useNames)
634s +         r1 <- rowAlls(x, value = value, na.rm = na.rm, useNames = useNames)
634s +         r2 <- colAlls(t(x), value = value, na.rm = na.rm, useNames = useNames)
634s +         stopifnot(identical(r1, r0))
634s +         stopifnot(identical(r2, r1))
634s +         if (!is.na(useNames) && !useNames && !setDimnames) {
634s +           for (rr in seq_len(nrow(x))) {
634s +             c0 <- all_R(x[rr, ], value, na.rm = na.rm)
634s +             c <- allValue(x[rr, ], value = value, na.rm = na.rm)
634s +             stopifnot(identical(c, r1[rr]))
634s +             stopifnot(identical(c, c0))
634s +           }
634s +         }
634s +         
634s +         r0 <- rowAnys_R(x, value = value, na.rm = na.rm, useNames = useNames)
634s +         r1 <- rowAnys(x, value = value, na.rm = na.rm, useNames = useNames)
634s +         r2 <- colAnys(t(x), value = value, na.rm = na.rm, useNames = useNames)
634s +         stopifnot(identical(r1, r0))
634s +         stopifnot(identical(r2, r1))        
634s +         if (!is.na(useNames) && !useNames && !setDimnames) {
634s +           for (rr in seq_len(nrow(x))) {
634s +             c0 <- any_R(x[rr, ], value, na.rm = na.rm)
634s +             c <- anyValue(x[rr, ], value = value, na.rm = na.rm)
634s +             stopifnot(identical(c, c0))
634s +             stopifnot(identical(c, r1[rr]))
634s +           }
634s +         }
634s +       }
634s +     }
634s +   }
634s + }
635s > 
635s > 
635s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
635s > # NA 0 test
635s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
635s > x <- matrix(0, nrow = 3L, ncol = 3L)
635s > x[1, ] <- c(NA_real_, NA_real_, 0)
635s > x[3, ] <- c(1, 0, 1)
635s > 
635s > dimnames <- list(letters[1:3], LETTERS[1:3])
635s > 
635s > # Test with and without dimnames on x
635s > for (setDimnames in c(TRUE, FALSE)) {
635s +   dimnames(x) <- if (setDimnames) dimnames else NULL
635s +   # Check names attribute
635s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
635s +     r0 <- rowAnys_R(x, value = 0, useNames = useNames)
635s +     r1 <- rowAnys(x, value = 0, useNames = useNames)
635s +     stopifnot(identical(r0, r1))
635s +   }
635s + }
635s > 
635s 
635s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
635s Copyright (C) 2024 The R Foundation for Statistical Computing
635s Platform: arm-unknown-linux-gnueabihf (32-bit)
635s 
635s R is free software and comes with ABSOLUTELY NO WARRANTY.
635s You are welcome to redistribute it under certain conditions.
635s Type 'license()' or 'licence()' for distribution details.
635s 
635s R is a collaborative project with many contributors.
635s Type 'contributors()' for more information and
635s 'citation()' on how to cite R or R packages in publications.
635s 
635s Type 'demo()' for some demos, 'help()' for on-line help, or
635s 'help.start()' for an HTML browser interface to help.
635s Type 'q()' to quit R.
635s 
635s > library("matrixStats")
635s > 
635s > rowAlls_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
635s +   if (is.na(value)) {
635s +     res <- apply(is.na(x), MARGIN = 1L, FUN = all, na.rm = na.rm)
635s +   } else {
635s +     y <- x == value
635s +     
635s +     # Preserve dimnames attribute
635s +     dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0)
635s +     if (!isTRUE(all.equal(dim(y), dim))) {
635s +       dim(y) <- dim
635s +       dimnames(y) <- dimnames(x)
635s +     }
635s +     
635s +     res <- apply(y, MARGIN = 1L, FUN = all, na.rm = na.rm)
635s +   }
635s +   if (is.na(useNames) || !useNames) names(res) <- NULL
635s +   res
635s + }
635s > 
635s > rowAnys_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
635s +   if (is.na(value)) {
635s +     res <- apply(is.na(x), MARGIN = 1L, FUN = any, na.rm = na.rm)
635s +   } else {
635s +     y <- x == value
635s +     
635s +     # Preserve dimnames attribute
635s +     dim <- dim(x) # for 0xN and Mx0 cases; needed in R (< 3.4.0)
635s +     if (!isTRUE(all.equal(dim(y), dim))) {
635s +       dim(y) <- dim
635s +       dimnames(y) <- dimnames(x)
635s +     }
635s +     
635s +     res <- apply(y, MARGIN = 1L, FUN = any, na.rm = na.rm)
635s +   }
635s +   if (is.na(useNames) || !useNames) names(res) <- NULL
635s +   res
635s + }
635s > 
635s > rowAnyMissings_R <- function(x, ..., useNames = NA) {
635s +   res <- apply(x, MARGIN = 1L, FUN = anyMissing)
635s +   if (is.na(useNames) || !useNames) names(res) <- NULL
635s +   res
635s + }
635s > 
635s > 
635s > all_R <- function(x, value = TRUE, ...) {
635s +   if (is.na(value)) {
635s +     all(is.na(x), ...)
635s +   } else {
635s +     all(x == value, ...)
635s +   }
635s + }
635s > 
635s > any_R <- function(x, value = TRUE, ...) {
635s +   if (is.na(value)) {
635s +     any(is.na(x), ...)
635s +   } else {
635s +     any(x == value, ...)
635s +   }
635s + }
635s > 
635s > 
635s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
635s > # Subsetted tests
635s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
635s > source("utils/validateIndicesFramework.R")
635s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
635s > storage.mode(x) <- "integer"
635s > x[2:3, ] <- NA_integer_
635s > x[2, 1] <- 0L
635s > x[4:5, ] <- 0L
635s > x[4, 6] <- NA_integer_
635s > 
635s > # To check names attribute
635s > dimnames <- list(letters[1:6], LETTERS[1:6])
635s > 
635s > # Test with and without dimnames on x
635s > for (setDimnames in c(TRUE, FALSE)) {
635s +   if (setDimnames) dimnames(x) <- dimnames
635s +   else dimnames(x) <- NULL
635s +   
635s +   count <- 0L
635s +   for (rows in index_cases) {
635s +     for (cols in index_cases) {
635s +       count <- count + 1L
635s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
635s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
635s +       useNames <- useNames[count %% length(useNames) + 1]
635s +       
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAlls, fsure = rowAlls_R,
635s +                                 value = 0, na.rm = TRUE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAlls, fsure = rowAlls_R,
635s +                                 value = 0, na.rm = FALSE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAlls, fsure = rowAlls_R,
635s +                                 value = NA_integer_, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAlls, fsure = rowAlls_R,
635s +                                 value = 0, na.rm = TRUE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAlls, fsure = rowAlls_R,
635s +                                 value = 0, na.rm = FALSE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAlls, fsure = rowAlls_R,
635s +                                 value = NA_integer_, useNames = useNames)
635s +   
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAnys, fsure = rowAnys_R,
635s +                                 value = 0, na.rm = TRUE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAnys, fsure = rowAnys_R,
635s +                                 value = 0, na.rm = FALSE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAnys, fsure = rowAnys_R,
635s +                                 value = NA_integer_, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAnys, fsure = rowAnys_R,
635s +                                 value = 0, na.rm = TRUE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAnys, fsure = rowAnys_R,
635s +                                 value = 0, na.rm = FALSE, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAnys, fsure = rowAnys_R,
635s +                                 value = NA_integer_, useNames = useNames)
635s +   
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 ftest = rowAnyMissings,
635s +                                 fsure = rowAnyMissings_R, useNames = useNames)
635s +       validateIndicesTestMatrix(x, rows, cols,
635s +                                 fcoltest = colAnyMissings,
635s +                                 fsure = rowAnyMissings_R, useNames = useNames)
635s +     }
635s +   }
635s + }
640s > 
640s > for (rr in seq_len(nrow(x))) {
640s +   for (idxs in index_cases) {
640s +     validateIndicesTestVector(x[rr, ], idxs,
640s +                               ftest = allValue, fsure = all_R,
640s +                               value = 0, na.rm = TRUE)
640s +     validateIndicesTestVector(x[rr, ], idxs,
640s +                               ftest = allValue, fsure = all_R,
640s +                               value = 0, na.rm = FALSE)
640s +     validateIndicesTestVector(x[rr, ], idxs,
640s +                               ftest = allValue, fsure = all_R,
640s +                               value = NA_integer_)
640s + 
640s +     validateIndicesTestVector(x[rr, ], idxs,
640s +                               ftest = anyValue, fsure = any_R,
640s +                               value = 0, na.rm = TRUE)
640s +     validateIndicesTestVector(x[rr, ], idxs,
640s +                               ftest = anyValue, fsure = any_R,
640s +                               value = 0, na.rm = FALSE)
640s +     validateIndicesTestVector(x[rr, ], idxs,
641s +                               ftest = anyValue, fsure = any_R,
641s +                               value = NA_integer_)
641s +   }
641s + }
641s > 
641s > 
641s > storage.mode(x) <- "character"
641s > # Test with and without dimnames on x
641s > for (setDimnames in c(TRUE, FALSE)) {
641s +   if (setDimnames) dimnames(x) <- dimnames
641s +   else dimnames(x) <- NULL
641s +   for (rows in index_cases) {
641s +     for (cols in index_cases) {
641s +       # Check names attribute
641s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAlls, fsure = rowAlls_R,
641s +                                   value = "0", na.rm = TRUE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAlls, fsure = rowAlls_R,
641s +                                   value = "0", na.rm = FALSE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAlls, fsure = rowAlls_R,
641s +                                   value = NA_character_, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAlls, fsure = rowAlls_R,
641s +                                   value = "0", na.rm = TRUE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAlls, fsure = rowAlls_R,
641s +                                   value = "0", na.rm = FALSE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAlls, fsure = rowAlls_R,
641s +                                   value = NA_character_, useNames = useNames)
641s +     
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAnys, fsure = rowAnys_R,
641s +                                   value = "0", na.rm = TRUE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAnys, fsure = rowAnys_R,
641s +                                   value = "0", na.rm = FALSE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAnys, fsure = rowAnys_R,
641s +                                   value = NA_character_, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAnys, fsure = rowAnys_R,
641s +                                   value = "0", na.rm = TRUE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAnys, fsure = rowAnys_R,
641s +                                   value = "0", na.rm = FALSE, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAnys, fsure = rowAnys_R,
641s +                                   value = NA_character_, useNames = useNames)
641s +     
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   ftest = rowAnyMissings,
641s +                                   fsure = rowAnyMissings_R, useNames = useNames)
641s +         validateIndicesTestMatrix(x, rows, cols,
641s +                                   fcoltest = colAnyMissings,
641s +                                   fsure = rowAnyMissings_R, useNames = useNames)        
641s +       }
641s +     }
641s +   }
641s + }
652s > 
652s > for (rr in seq_len(nrow(x))) {
652s +   for (idxs in index_cases) {
652s +     validateIndicesTestVector(x[rr, ], idxs,
652s +                               ftest = allValue, fsure = all_R,
652s +                               value = "0", na.rm = TRUE)
652s +     validateIndicesTestVector(x[rr, ], idxs,
652s +                               ftest = allValue, fsure = all_R,
652s +                               value = "0", na.rm = FALSE)
652s +     validateIndicesTestVector(x[rr, ], idxs,
652s +                               ftest = allValue, fsure = all_R,
652s +                               value = NA_integer_)
652s + 
652s +     validateIndicesTestVector(x[rr, ], idxs,
652s +                               ftest = anyValue, fsure = any_R,
652s +                               value = "0", na.rm = TRUE)
652s +     validateIndicesTestVector(x[rr, ], idxs,
652s +                               ftest = anyValue, fsure = any_R,
652s +                               value = "0", na.rm = FALSE)
652s +     validateIndicesTestVector(x[rr, ], idxs,
652s +                               ftest = anyValue, fsure = any_R,
652s +                               value = NA_integer_)
652s +   }
652s + }
652s > 
652s 
652s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
652s Copyright (C) 2024 The R Foundation for Statistical Computing
652s Platform: arm-unknown-linux-gnueabihf (32-bit)
652s 
652s R is free software and comes with ABSOLUTELY NO WARRANTY.
652s You are welcome to redistribute it under certain conditions.
652s Type 'license()' or 'licence()' for distribution details.
652s 
652s R is a collaborative project with many contributors.
652s Type 'contributors()' for more information and
652s 'citation()' on how to cite R or R packages in publications.
652s 
652s Type 'demo()' for some demos, 'help()' for on-line help, or
652s 'help.start()' for an HTML browser interface to help.
652s Type 'q()' to quit R.
652s 
653s > library("matrixStats")
653s > 
653s > X <- matrix(rnorm(20 * 6), nrow = 20, ncol = 6)
653s > rownames(X) <- LETTERS[1:nrow(X)]
653s > colnames(X) <- letters[1:ncol(X)]
653s > print(X)
653s             a           b           c           d           e           f
653s A -1.79170711 -0.98661383  1.18473009  0.35849440 -0.62986141 -1.78129233
653s B -0.74966407  0.61835556 -1.14936237  2.09780801  2.82184851  0.33953206
653s C -0.01972905 -0.29005237 -0.01187071  0.54560613 -1.03589739  0.98297478
653s D -0.59975070 -0.90658747 -0.10023441  1.25437572 -1.77766954 -1.18164394
653s E  0.45594086  1.65701876  0.79346232  1.45260402 -0.34231384 -0.34527291
653s F  0.74161609  0.15256554  0.41374124 -0.02239349  1.04059557  0.46515158
653s G  0.83520654  0.34048388  0.11010578 -0.04574982  0.30198086 -1.33863156
653s H -1.33051460  0.45029746  0.88578966  0.45991710 -0.94278795  1.24454097
653s I  1.81038841  1.27554324  2.51390545  0.92362613 -0.41104712 -0.94322193
653s J  0.12304333 -1.18665525 -0.80449805 -0.15461011  0.09633266  0.48620826
653s K -0.19939515  0.64767274  0.37370465 -0.05526828 -0.68363276 -0.05896629
653s L -0.99665453  0.06218061  2.21197397  0.30698212 -0.16132590  0.27135351
653s M -1.35424940  0.59640381  1.96442213  0.21422870  1.34095849 -0.96198140
653s N  0.13190974 -0.35817750  0.84870954  2.10113424 -0.57439134 -0.96478243
653s O -0.46078270  0.81546675 -0.69817306 -1.01513259 -0.76307035 -1.08110432
653s P -0.62263012  0.13920505 -0.89584990  0.07331917  1.52731309 -0.06998974
653s Q  0.27262772 -1.31930835 -0.63454277  0.75472877 -0.13568338 -0.65517690
653s R  0.09803998 -0.68620626 -1.28060339 -0.68060870 -0.58855704 -0.26218196
653s S  0.33559881 -1.12258955 -1.09285869  1.23047515  0.81317120 -0.04827536
653s T -0.78827179  0.43325860  0.14596932  1.23375671 -0.73262050 -0.41318859
653s > 
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # Apply rowMeans() for 3 sets of 2 columns
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > nbr_of_sets <- 3L
653s > S <- matrix(1:ncol(X), ncol = nbr_of_sets)
653s > colnames(S) <- sprintf("s%d", 1:nbr_of_sets)
653s > print(S)
653s      s1 s2 s3
653s [1,]  1  3  5
653s [2,]  2  4  6
653s > 
653s > Z <- rowAvgsPerColSet(X, S = S)
653s > print(Z)
653s            s1          s2          s3
653s A -1.38916047  0.77161224 -1.20557687
653s B -0.06565425  0.47422282  1.58069029
653s C -0.15489071  0.26686771 -0.02646131
653s D -0.75316909  0.57707066 -1.47965674
653s E  1.05647981  1.12303317 -0.34379337
653s F  0.44709082  0.19567387  0.75287358
653s G  0.58784521  0.03217798 -0.51832535
653s H -0.44010857  0.67285338  0.15087651
653s I  1.54296582  1.71876579 -0.67713452
653s J -0.53180596 -0.47955408  0.29127046
653s K  0.22413880  0.15921819 -0.37129953
653s L -0.46723696  1.25947804  0.05501381
653s M -0.37892279  1.08932542  0.18948855
653s N -0.11313388  1.47492189 -0.76958689
653s O  0.17734202 -0.85665283 -0.92208734
653s P -0.24171254 -0.41126537  0.72866167
653s Q -0.52334031  0.06009300 -0.39543014
653s R -0.29408314 -0.98060605 -0.42536950
653s S -0.39349537  0.06880823  0.38244792
653s T -0.17750659  0.68986302 -0.57290454
653s > 
653s > # Validation
653s > Z0 <- cbind(s1 = rowMeans(X[, 1:2]), s2 = rowMeans(X[, 3:4]),
653s +             s3 = rowMeans(X[, 5:6]))
653s > stopifnot(identical(drop(Z), Z0))
653s > 
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # Apply colMeans() for 5 sets of 4 rows
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > nbr_of_sets <- 5L
653s > S <- matrix(1:nrow(X), ncol = nbr_of_sets)
653s > colnames(S) <- sprintf("s%d", 1:nbr_of_sets)
653s > print(S)
653s      s1 s2 s3 s4 s5
653s [1,]  1  5  9 13 17
653s [2,]  2  6 10 14 18
653s [3,]  3  7 11 15 19
653s [4,]  4  8 12 16 20
653s > 
653s > Z <- colAvgsPerRowSet(X, S = S)
653s > print(Z)
653s              a          b           c         d           e           f
653s s1 -0.79021273 -0.3912245 -0.01918435 1.0640711 -0.15539496 -0.41010736
653s s2  0.17556222  0.6500914  0.55077475 0.4610945  0.01436866  0.00644702
653s s3  0.18434552  0.1996853  1.07377150 0.2551825 -0.28991828 -0.06115661
653s s4 -0.57643812  0.2982245  0.30477718 0.3433874  0.38270247 -0.76946447
653s s5 -0.02050132 -0.6737114 -0.71550888 0.6345880 -0.16092243 -0.34470570
653s > 
653s > # Validation
653s > Z0 <- rbind(s1 = colMeans(X[1:4, ]), s2 = colMeans(X[5:8, ]),
653s +             s3 = colMeans(X[9:12, ]), s4 = colMeans(X[13:16, ]),
653s +             s5 = colMeans(X[17:20, ]))
653s > stopifnot(identical(drop(Z), Z0))
653s > 
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # When there is only one "complete" set
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > nbr_of_sets <- 1L
653s > S <- matrix(1:ncol(X), ncol = nbr_of_sets)
653s > colnames(S) <- sprintf("s%d", 1:nbr_of_sets)
653s > print(S)
653s      s1
653s [1,]  1
653s [2,]  2
653s [3,]  3
653s [4,]  4
653s [5,]  5
653s [6,]  6
653s > 
653s > Z <- rowAvgsPerColSet(X, S = S, FUN = rowMeans)
653s > print(Z)
653s             s1
653s A -0.607708366
653s B  0.663086284
653s C  0.028505232
653s D -0.551918389
653s E  0.611906536
653s F  0.465212756
653s G  0.033899279
653s H  0.127873773
653s I  0.861532364
653s J -0.240029859
653s K  0.004019153
653s L  0.282418297
653s M  0.299963722
653s N  0.197400374
653s O -0.533799381
653s P  0.025227924
653s Q -0.286225818
653s R -0.566686228
653s S  0.019253593
653s T -0.020182707
653s > 
653s > Z0 <- rowMeans(X)
653s > stopifnot(identical(drop(Z), Z0))
653s > 
653s > 
653s > nbr_of_sets <- 1L
653s > S <- matrix(1:nrow(X), ncol = nbr_of_sets)
653s > colnames(S) <- sprintf("s%d", 1:nbr_of_sets)
653s > print(S)
653s       s1
653s  [1,]  1
653s  [2,]  2
653s  [3,]  3
653s  [4,]  4
653s  [5,]  5
653s  [6,]  6
653s  [7,]  7
653s  [8,]  8
653s  [9,]  9
653s [10,] 10
653s [11,] 11
653s [12,] 12
653s [13,] 13
653s [14,] 14
653s [15,] 15
653s [16,] 16
653s [17,] 17
653s [18,] 18
653s [19,] 19
653s [20,] 20
653s > 
653s > Z <- colAvgsPerRowSet(X, S = S, FUN = colMeans)
653s > print(Z)
653s             a          b        c         d           e          f
653s s1 -0.2054489 0.01661307 0.238926 0.5516647 -0.04183291 -0.3157974
653s > 
653s > Z0 <- colMeans(X)
653s > stopifnot(identical(drop(Z), Z0))
653s > 
653s > 
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # Use weights
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > nbr_of_sets <- 3L
653s > S <- matrix(1:ncol(X), ncol = nbr_of_sets)
653s > colnames(S) <- sprintf("s%d", 1:nbr_of_sets)
653s > print(S)
653s      s1 s2 s3
653s [1,]  1  3  5
653s [2,]  2  4  6
653s > 
653s > W <- matrix(runif(length(X)), nrow = nrow(X), ncol = ncol(X))
653s > Z1 <- rowAvgsPerColSet(X, W = W, S = S, FUN = rowWeightedMeans)
653s > print(Z1)
653s            s1          s2          s3
653s A -1.38916047  0.77161224 -1.20557687
653s B -0.06565425  0.47422282  1.58069029
653s C -0.15489071  0.26686771 -0.02646131
653s D -0.75316909  0.57707066 -1.47965674
653s E  1.05647981  1.12303317 -0.34379337
653s F  0.44709082  0.19567387  0.75287358
653s G  0.58784521  0.03217798 -0.51832535
653s H -0.44010857  0.67285338  0.15087651
653s I  1.54296582  1.71876579 -0.67713452
653s J -0.53180596 -0.47955408  0.29127046
653s K  0.22413880  0.15921819 -0.37129953
653s L -0.46723696  1.25947804  0.05501381
653s M -0.37892279  1.08932542  0.18948855
653s N -0.11313388  1.47492189 -0.76958689
653s O  0.17734202 -0.85665283 -0.92208734
653s P -0.24171254 -0.41126537  0.72866167
653s Q -0.52334031  0.06009300 -0.39543014
653s R -0.29408314 -0.98060605 -0.42536950
653s S -0.39349537  0.06880823  0.38244792
653s T -0.17750659  0.68986302 -0.57290454
653s > Z2 <- colAvgsPerRowSet(X, W = W, S = S, FUN = colWeightedMeans)
653s > print(Z2)
653s             a          b           c         d          e           f
653s s1 -1.2706856 -0.1841291  0.01768386 1.2281512  1.0959936 -0.72088014
653s s2 -0.3097399 -0.5983199 -0.05605256 0.8999909 -1.4067835 -0.09933458
653s s3  0.5987785  0.9047921  0.60360178 0.7151053  0.3491409  0.05993934
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # Result should always be a matrix, including when nrow(X) <= 1
653s > # (https://github.com/HenrikBengtsson/matrixStats/issues/108)
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > X <- matrix(1:3, nrow = 1L, ncol = 3L)
653s > S <- matrix(1, nrow = 1L, ncol = 1L)
653s > Z1 <- rowAvgsPerColSet(X, S = S)
653s > stopifnot(is.matrix(Z1))
653s > Z2 <- rowAvgsPerColSet(X, S = S, rows = 0)
653s > stopifnot(is.matrix(Z2))
653s > 
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # Works with many, one or zero columns / rows
653s > # (https://github.com/HenrikBengtsson/matrixStats/issues/172)
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > S <- cbind(1:2, 3:4, 5:6)
653s > X <- matrix(rnorm(2 * 6), nrow = 6, ncol = 2)
653s > Z2 <- colAvgsPerRowSet(X, S = S, FUN = colSums2)
653s > Z2_ref <- rbind(colSums2(X[S[,1], ,drop=FALSE]),
653s +                 colSums2(X[S[,2], ,drop=FALSE]),
653s +                 colSums2(X[S[,3], ,drop=FALSE]))
653s > stopifnot(identical(Z2, Z2_ref))
653s > X <- matrix(rnorm(6), nrow = 6, ncol = 1)
653s > Z1 <- colAvgsPerRowSet(X, S = S, FUN = colSums2)
653s > Z1_ref <- rbind(colSums2(X[S[,1], ,drop=FALSE]),
653s +                 colSums2(X[S[,2], ,drop=FALSE]),
653s +                 colSums2(X[S[,3], ,drop=FALSE]))
653s > stopifnot(identical(Z1, Z1_ref))
653s > X <- matrix(numeric(0), nrow = 6, ncol = 0)
653s > Z0 <- colAvgsPerRowSet(X, S = S, FUN = colSums2)
653s > Z0_ref <- matrix(numeric(0), nrow = ncol(S), ncol = 0)
653s > stopifnot(identical(Z0, unname(Z0_ref)))
653s > 
653s > 
653s > S <- rbind(1:4, 5:8)
653s > X <- matrix(rnorm(n = 2 * 8), nrow = 2, ncol = 8)
653s > Z2 <- rowAvgsPerColSet(X, S = S, FUN = rowMeans2)
653s > Z2_ref <- cbind(rowMeans2(X[,S[,1],drop=FALSE]),
653s +                 rowMeans2(X[,S[,2],drop=FALSE]),
653s +                 rowMeans2(X[,S[,3],drop=FALSE]),
653s +                 rowMeans2(X[,S[,4],drop=FALSE]))
653s > stopifnot(identical(Z2, Z2_ref))
653s > X <- matrix(rnorm(n = 8), nrow = 1, ncol = 8)
653s > Z1 <- rowAvgsPerColSet(X, S = S, FUN = rowMeans2)
653s > Z1_ref <- cbind(rowMeans2(X[,S[,1],drop=FALSE]),
653s +                 rowMeans2(X[,S[,2],drop=FALSE]),
653s +                 rowMeans2(X[,S[,3],drop=FALSE]),
653s +                 rowMeans2(X[,S[,4],drop=FALSE]))
653s > stopifnot(identical(Z1, Z1_ref))
653s > X <- matrix(numeric(0), nrow = 0, ncol = 8)
653s > Z0 <- rowAvgsPerColSet(X, S = S, FUN = rowMeans2)
653s > Z0_ref <- matrix(numeric(0), nrow = 0, ncol = ncol(S))
653s > stopifnot(identical(Z0, Z0_ref))
653s > 
653s 
653s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
653s Copyright (C) 2024 The R Foundation for Statistical Computing
653s Platform: arm-unknown-linux-gnueabihf (32-bit)
653s 
653s R is free software and comes with ABSOLUTELY NO WARRANTY.
653s You are welcome to redistribute it under certain conditions.
653s Type 'license()' or 'licence()' for distribution details.
653s 
653s R is a collaborative project with many contributors.
653s Type 'contributors()' for more information and
653s 'citation()' on how to cite R or R packages in publications.
653s 
653s Type 'demo()' for some demos, 'help()' for on-line help, or
653s 'help.start()' for an HTML browser interface to help.
653s Type 'q()' to quit R.
653s 
653s > library("matrixStats")
653s > 
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > # Subsetted tests
653s > # - - - - - - - - - - - - - - - - - - - - - - - - - -
653s > source("utils/validateIndicesFramework.R")
653s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
653s > #W <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
653s > for (rows in index_cases) {
653s +   for (cols in index_cases) {
653s +     if (is.null(rows)) {
653s +       rows <- seq_len(nrow(x))
653s +       rows_finite <- rows
653s +     } else {
653s +       rows_finite <- rows[is.finite(rows)]
653s +     }
653s + 
653s +     if (is.null(cols)) {
653s +       cols <- seq_len(ncol(x))
653s +       cols_finite <- cols
653s +     } else {
653s +       cols_finite <- cols[is.finite(cols)]
653s +     }
653s + 
653s +     suppressWarnings({
653s +       actual <- tryCatch({
653s +         rowAvgsPerColSet(x, rows = rows, S = matrix(cols, ncol = 1),
653s +                          FUN = rowMeans)
653s +       }, error = function(c) "error")
653s +       expect <- tryCatch({
653s +         rowMeans(x[rows, cols_finite, drop = FALSE], na.rm = TRUE)
653s +       }, error = function(c) "error")
653s +     })
653s +     stopifnot(all.equal(as.vector(actual), expect))
653s + 
653s +     suppressWarnings({
653s +       actual <- tryCatch({
653s +         colAvgsPerRowSet(x, cols = cols, S = matrix(rows, ncol = 1),
653s +                          FUN = colMeans)
653s +       }, error = function(c) "error")
653s +       expect <- tryCatch({
653s +         colMeans(x[rows_finite, cols, drop = FALSE], na.rm = TRUE)
653s +       }, error = function(c) "error")
653s +     })
653s +     stopifnot(all.equal(as.vector(actual), expect))
653s +   }
653s + }
654s > 
654s 
654s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
654s Copyright (C) 2024 The R Foundation for Statistical Computing
654s Platform: arm-unknown-linux-gnueabihf (32-bit)
654s 
654s R is free software and comes with ABSOLUTELY NO WARRANTY.
654s You are welcome to redistribute it under certain conditions.
654s Type 'license()' or 'licence()' for distribution details.
654s 
654s R is a collaborative project with many contributors.
654s Type 'contributors()' for more information and
654s 'citation()' on how to cite R or R packages in publications.
654s 
654s Type 'demo()' for some demos, 'help()' for on-line help, or
654s 'help.start()' for an HTML browser interface to help.
654s Type 'q()' to quit R.
654s 
654s > library("matrixStats")
654s > 
654s > x <- matrix(1:27, ncol = 3)
654s > 
654s > # To check names attribute
654s > dimnames <- list(letters[1:9], LETTERS[1:3])
654s > 
654s > rowCollapse_R <- function(x, idxs, ..., useNames = NA) {
654s +   res <- x[, idxs]
654s +   # Preserve names attribute?
654s +   if (is.na(useNames) || !useNames) names(res) <- NULL
654s +   res
654s + }
654s > 
654s > idxs <- 1L
654s > # Test with and without dimnames on x
654s > for (setDimnames in c(TRUE, FALSE)) {
654s +   if (setDimnames) dimnames(x) <- dimnames
654s +   else dimnames(x) <- NULL
654s +   # Check names attribute
654s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
654s +     y_truth <- rowCollapse_R(x, idxs, useNames = useNames)
654s +     y <- rowCollapse(x, idxs, useNames = useNames)
654s +     stopifnot(identical(y, y_truth))
654s +     y2 <- colCollapse(t(x), idxs, useNames = useNames)
654s +     stopifnot(identical(y2, y))
654s +   }
654s + }
654s > 
654s > idxs <- 2L
654s > # Test with and without dimnames on x
654s > for (setDimnames in c(TRUE, FALSE)) {
654s +   if (setDimnames) dimnames(x) <- dimnames
654s +   else dimnames(x) <- NULL
654s +   # Check names attribute
654s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
654s +     y_truth <- rowCollapse_R(x, idxs, useNames = useNames)
654s +     y <- rowCollapse(x, idxs, useNames = useNames)
654s +     stopifnot(identical(y, y_truth))
654s +     y2 <- colCollapse(t(x), idxs, useNames = useNames)
654s +     stopifnot(identical(y2, y))
654s +   }
654s + }
654s > 
654s > 
654s > rowCollapse_R <- function(x, idxs, ..., useNames = NA) {
654s +   res <- c(x[1:5, 1], x[6:9, 3])
654s +   # Preserve names attribute?
654s +   if (is.na(useNames) || !useNames) names(res) <- NULL
654s +   res
654s + }
654s > 
654s > idxs <- c(1, 1, 1, 1, 1, 3, 3, 3, 3)
654s > # Test with and without dimnames on x
654s > for (setDimnames in c(TRUE, FALSE)) {
654s +   if (setDimnames) dimnames(x) <- dimnames
654s +   else dimnames(x) <- NULL
654s +   # Check names attribute
654s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
654s +     y_truth <- rowCollapse_R(x, idxs, useNames = useNames)
654s +     y <- rowCollapse(x, idxs, useNames = useNames)
654s +     stopifnot(identical(y, y_truth))
654s +     y2 <- colCollapse(t(x), idxs, useNames = useNames)
654s +     stopifnot(identical(y2, y))
654s +   }
654s + }
654s > 
654s > 
654s > rowCollapse_R <- function(x, idxs, ..., useNames = NA) {
654s +   res <- c(x[1, 1], x[2, 2], x[3, 3], x[4, 1], x[5, 2],
654s +            x[6, 3], x[7, 1], x[8, 2], x[9, 3])
654s +   # Preserve names attribute?
654s +   if (isTRUE(useNames)) {
654s +     names <- rownames(x)
654s +     if (!is.null(names)) names(res) <- names
654s +   }
654s +   res
654s + }
654s > 
654s > idxs <- 1:3
654s > # Test with and without dimnames on x
654s > for (setDimnames in c(TRUE, FALSE)) {
654s +   if (setDimnames) dimnames(x) <- dimnames
654s +   else dimnames(x) <- NULL
654s +   # Check names attribute
654s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
654s +     y_truth <- rowCollapse_R(x, idxs, useNames = useNames)
654s +     y <- rowCollapse(x, idxs, useNames = useNames)
654s +     stopifnot(identical(y, y_truth))
654s +     y2 <- colCollapse(t(x), idxs, useNames = useNames)
654s +     stopifnot(identical(y2, y))
654s +   }
654s + }
654s > 
654s 
654s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
654s Copyright (C) 2024 The R Foundation for Statistical Computing
654s Platform: arm-unknown-linux-gnueabihf (32-bit)
654s 
654s R is free software and comes with ABSOLUTELY NO WARRANTY.
654s You are welcome to redistribute it under certain conditions.
654s Type 'license()' or 'licence()' for distribution details.
654s 
654s R is a collaborative project with many contributors.
654s Type 'contributors()' for more information and
654s 'citation()' on how to cite R or R packages in publications.
654s 
654s Type 'demo()' for some demos, 'help()' for on-line help, or
654s 'help.start()' for an HTML browser interface to help.
654s Type 'q()' to quit R.
654s 
655s > library("matrixStats")
655s > 
655s > rowCollapse_R <- function(x, idxs, ..., useNames = NA) {
655s +   ans <- c()
655s +   storage.mode(ans) <- storage.mode(x)
655s +   for (ii in seq_len(length(idxs))) {
655s +     ans[ii] <- x[ii, idxs[ii]]
655s +   }
655s +   
655s +   # Preserve names attribute
655s +   if (isTRUE(useNames)) {
655s +     names <- rownames(x)
655s +     if (!is.null(names)) names(ans) <- names
655s +   }
655s + 
655s +   ans
655s + }
655s > 
655s > 
655s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
655s > # Subsetted tests
655s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
655s > source("utils/validateIndicesFramework.R")
655s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
655s > storage.mode(x) <- "integer"
655s > 
655s > # To check names attribute
655s > dimnames <- list(letters[1:6], LETTERS[1:6])
655s > 
655s > for (rows in index_cases) {
655s +   if (is.null(rows)) rows <- seq_len(nrow(x))
655s + 
655s +   for (idxs in list(2L, seq_len(6L))) {
655s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
655s +       suppressWarnings({
655s +         actual <- tryCatch(rowCollapse(x, idxs, rows = rows, useNames = useNames),
655s +                            error = function(c) "error")
655s +         expect <- tryCatch({
655s +           idxs_0 <- rep(idxs, length.out = nrow(x))[rows]
655s +           rowCollapse_R(x[rows, , drop = FALSE], idxs_0, useNames = useNames)
655s +         }, error = function(c) "error")
655s +       })
655s +       stopifnot(all.equal(actual, expect))
655s +     
655s +       suppressWarnings({
655s +         actual <- tryCatch(colCollapse(t(x), idxs, cols = rows, useNames = useNames),
655s +                            error = function(c) "error")
655s +       })
655s +       stopifnot(all.equal(actual, expect))
655s +       
655s +       # Check names attribute
655s +       dimnames(x) <- dimnames
655s +       suppressWarnings({
655s +         actual <- tryCatch(rowCollapse(x, idxs, rows = rows, useNames = useNames),
655s +                            error = function(c) "error")
655s +         expect <- tryCatch({
655s +           idxs_0 <- rep(idxs, length.out = nrow(x))[rows]
655s +           rowCollapse_R(x[rows, , drop = FALSE], idxs_0, useNames = useNames)
655s +         }, error = function(c) "error")
655s +       })
655s +       stopifnot(all.equal(actual, expect))
655s +       
655s +       suppressWarnings({
655s +         actual <- tryCatch(colCollapse(t(x), idxs, cols = rows, useNames = useNames),
655s +                            error = function(c) "error")
655s +       })
655s +       stopifnot(all.equal(actual, expect))
655s +       
655s +       dimnames(x) <- NULL
655s +     }
655s +   }
655s + }
655s > 
655s 
655s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
655s Copyright (C) 2024 The R Foundation for Statistical Computing
655s Platform: arm-unknown-linux-gnueabihf (32-bit)
655s 
655s R is free software and comes with ABSOLUTELY NO WARRANTY.
655s You are welcome to redistribute it under certain conditions.
655s Type 'license()' or 'licence()' for distribution details.
655s 
655s R is a collaborative project with many contributors.
655s Type 'contributors()' for more information and
655s 'citation()' on how to cite R or R packages in publications.
655s 
655s Type 'demo()' for some demos, 'help()' for on-line help, or
655s 'help.start()' for an HTML browser interface to help.
655s Type 'q()' to quit R.
655s 
655s > library("matrixStats")
655s > 
655s > rowCounts_R <- function(x, value = TRUE, na.rm = FALSE, ...) {
655s +   if (is.na(value)) {
655s +     counts <- apply(x, MARGIN = 1L, FUN = function(x)
655s +       sum(is.na(x))
655s +     )
655s +   } else {
655s +     counts <- apply(x, MARGIN = 1L, FUN = function(x)
655s +       sum(x == value, na.rm = na.rm)
655s +     )
655s +   }
655s +   # Preserve names attribute
655s +   names <- names(counts)  
655s +   counts <- as.integer(counts)
655s +   if (isTRUE(useNames) && !is.null(names)) names(counts) <- names
655s +   counts
655s + }
655s > 
655s > 
655s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
655s > # Data type: integer and numeric
655s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
655s > for (mode in c("integer", "double")) {
655s +   x <- matrix(runif(10 * 5, min = -3, max = 3), nrow = 10L, ncol = 5L)
655s +   x[sample.int(length(x), size = 7L)] <- 0
655s +   storage.mode(x) <- mode
655s +   
655s +   dimnames = list(letters[1:10], LETTERS[1:5])
655s +   
655s +   # Test with and without dimnames on x
655s +   for (setDimnames in c(TRUE, FALSE)) {
655s +     if (setDimnames) dimnames(x) <- dimnames
655s +     else dimnames(x) <- NULL    
655s +     for (na.rm in c(FALSE, TRUE)) {
655s +       # Check names attribute
655s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
655s +         # Count zeros
655s +         r0 <- rowCounts_R(x, value = 0, na.rm = na.rm, useNames = useNames)
655s +         r1 <- rowCounts(x, value = 0, na.rm = na.rm, useNames = useNames)
655s +         r2 <- colCounts(t(x), value = 0, na.rm = na.rm, useNames = useNames)
655s +         stopifnot(identical(r1, r0))
655s +         stopifnot(identical(r2, r0))
655s +         
655s +         # Count NAs
655s +         r0 <- rowCounts_R(x, value = NA, na.rm = na.rm, useNames = useNames)
655s +         r1 <- rowCounts(x, value = NA, na.rm = na.rm, useNames = useNames)
655s +         r2 <- colCounts(t(x), value = NA, na.rm = na.rm, useNames = useNames)
655s +         stopifnot(identical(r1, r0))
655s +         stopifnot(identical(r2, r0))
655s +         
655s +         if (mode == "integer") {
655s +           ux <- unique(as.vector(x))
655s +           r0 <- r1 <- r2 <- integer(nrow(x))
655s +           for (value in ux) {
655s +             r0 <- r0 + rowCounts_R(x, value = value, na.rm = na.rm, useNames = useNames)
655s +             r1 <- r1 + rowCounts(x, value = value, na.rm = na.rm, useNames = useNames)
655s +             r2 <- r2 + colCounts(t(x), value = value, na.rm = na.rm, useNames = useNames)
655s +             stopifnot(identical(r1, r0))
655s +             stopifnot(identical(r2, r0))
655s +           }
655s +           stopifnot(all(r0 == ncol(x)))
655s +         } # if (mode == "integer")
655s +       } # for (useNames ...)
655s +     } # for (na.rm ...)
655s +   } # for (setDimnames ...)
655s + } # for (mode ...)
656s > 
656s > 
656s > # All NAs
656s > na_list <- list(NA_integer_, NA_real_, NaN)
656s > for (na_value in na_list) {
656s +   x <- matrix(na_value, nrow = 10L, ncol = 5L)
656s +   # Test with and without dimnames on x
656s +   for (setDimnames in c(TRUE, FALSE)) {
656s +     if (setDimnames) dimnames(x) <- dimnames
656s +     else dimnames(x) <- NULL    
656s +     for (na.rm in c(FALSE, TRUE)) {
656s +       # Check names attribute
656s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
656s +         r0 <- rowCounts_R(x, na.rm = na.rm, useNames = useNames)
656s +         r1 <- rowCounts(x, na.rm = na.rm, useNames = useNames)
656s +         r2 <- colCounts(t(x), na.rm = na.rm, useNames = useNames)
656s +         stopifnot(identical(r1, r0))
656s +         stopifnot(identical(r2, r0))
656s +         
656s +         # Count NAs
656s +         r0 <- rowCounts_R(x, value = NA, na.rm = na.rm, useNames = useNames)
656s +         r1 <- rowCounts(x, value = NA, na.rm = na.rm, useNames = useNames)
656s +         r2 <- colCounts(t(x), value = NA, na.rm = na.rm, useNames = useNames)
656s +         stopifnot(all(r0 == ncol(x)))
656s +         stopifnot(identical(r1, r0))
656s +         stopifnot(identical(r2, r0))
656s +       }
656s +     }
656s +   }
656s + } # for (na_value ...)
656s > 
656s > 
656s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
656s > # Data type: logical
656s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
656s > x <- matrix(FALSE, nrow = 10L, ncol = 4L)
656s > x[7:8, 2:3] <- TRUE
656s > x[1:3, ] <- TRUE
656s > x[, 1] <- TRUE
656s > x[4, ] <- FALSE
656s > x[, 4] <- FALSE
656s > x[2, ] <- FALSE
656s > x[3, ] <- TRUE
656s > 
656s > # To check names attribute
656s > dimnames <- list(letters[1:10], LETTERS[1:4])
656s > 
656s > # Test with and without dimnames on x
656s > for (setDimnames in c(TRUE, FALSE)) {
656s +   if (setDimnames) dimnames(x) <- dimnames
656s +   else dimnames(x) <- NULL
656s +   # Row/column counts
656s +   for (na.rm in c(FALSE, TRUE)) {
656s +     # Check names attribute
656s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
656s +       r0 <- rowCounts_R(x, na.rm = na.rm, useNames = useNames)
656s +       r1 <- rowCounts(x, na.rm = na.rm, useNames = useNames)
656s +       r2 <- colCounts(t(x), na.rm = na.rm, useNames = useNames)
656s +       stopifnot(identical(r1, r0))
656s +       stopifnot(identical(r2, r0))
656s +       
656s +       r_true <- rowCounts(x, value = TRUE, na.rm = na.rm, useNames = useNames)
656s +       r_false <- rowCounts(x, value = FALSE, na.rm = na.rm, useNames = useNames)
656s +       stopifnot(r_true + r_false == ncol(x))
656s +       
656s +       c_true <- colCounts(x, value = TRUE, na.rm = na.rm, useNames = useNames)
656s +       c_false <- colCounts(x, value = FALSE, na.rm = na.rm, useNames = useNames)
656s +       stopifnot(c_true + c_false == nrow(x))
656s +       
656s +       # Count NAs
656s +       r0 <- rowCounts_R(x, value = NA, na.rm = na.rm, useNames = useNames)
656s +       r1 <- rowCounts(x, value = NA, na.rm = na.rm, useNames = useNames)
656s +       r2 <- colCounts(t(x), value = NA, na.rm = na.rm, useNames = useNames)
656s +       stopifnot(identical(r1, r0))
656s +       stopifnot(identical(r2, r0))
656s +     }
656s +   }
656s + }
656s > 
656s > 
656s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
656s > # Data type: character (not sure if this should be supported)
656s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
656s > x <- matrix(rep(letters, length.out = 10 * 5), nrow = 10L, ncol = 5L)
656s > x[2:3, 3:4] <- NA_character_
656s > 
656s > # Row/column counts
656s > for (na.rm in c(FALSE, TRUE)) {
656s +   for (value in c("g", NA_character_)) {
656s +     r0 <- rowCounts_R(x, value = value, na.rm = na.rm)
656s +     r1 <- rowCounts(x, value = value, na.rm = na.rm)
656s +     r2 <- colCounts(t(x), value = value, na.rm = na.rm)
656s +     stopifnot(identical(r1, r0))
656s +     stopifnot(identical(r2, r0))
656s + 
656s +     c <- count(x[1, ], value = value, na.rm = na.rm)
656s +     stopifnot(identical(c, r1[1]))
656s + 
656s +     c <- count(x[2, ], value = value, na.rm = na.rm)
656s +     stopifnot(identical(c, r1[2]))
656s +   }
656s + }
656s > 
656s > # NA row
656s > x <- matrix(0, nrow = 2L, ncol = 2L)
656s > x[1, ] <- NA_integer_
656s > 
656s > dimnames <- list(letters[1:2], LETTERS[1:2])
656s > 
656s > # Test with and without dimnames on x
656s > for (setDimnames in c(TRUE, FALSE)) {
656s +   if (setDimnames) dimnames(x) <- dimnames
656s +   else dimnames(x) <- NULL    
656s +   # Check names attribute
656s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
656s +     r0 <- rowCounts(x, value = 0, useNames = useNames)
656s +     r1 <- rowCounts_R(x, value = 0, useNames = useNames)
656s +     stopifnot(identical(r0, r1))
656s +   }
656s + }
656s > 
656s 
656s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
656s Copyright (C) 2024 The R Foundation for Statistical Computing
656s Platform: arm-unknown-linux-gnueabihf (32-bit)
656s 
656s R is free software and comes with ABSOLUTELY NO WARRANTY.
656s You are welcome to redistribute it under certain conditions.
656s Type 'license()' or 'licence()' for distribution details.
656s 
656s R is a collaborative project with many contributors.
656s Type 'contributors()' for more information and
656s 'citation()' on how to cite R or R packages in publications.
656s 
656s Type 'demo()' for some demos, 'help()' for on-line help, or
656s 'help.start()' for an HTML browser interface to help.
656s Type 'q()' to quit R.
656s 
656s > library("matrixStats")
656s > 
656s > rowCounts_R <- function(x, value = TRUE, na.rm = FALSE, ..., useNames = NA) {
656s +   if (is.na(value)) {
656s +     counts <- apply(x, MARGIN = 1L, FUN = function(x)
656s +       sum(is.na(x))
656s +     )
656s +   } else {
656s +     counts <- apply(x, MARGIN = 1L, FUN = function(x)
656s +       sum(x == value, na.rm = na.rm)
656s +     )
656s +   }
656s +   # Preserve names attribute
656s +   names <- names(counts)  
656s +   counts <- as.integer(counts)
656s +   if (isTRUE(useNames) && !is.null(names)) names(counts) <- names
656s +   counts
656s + } # rowCounts_R()
656s > 
656s > 
656s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
656s > # Subsetted tests
656s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
656s > source("utils/validateIndicesFramework.R")
656s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
656s > x[2:3, 3:4] <- NA_real_
656s > storage.mode(x) <- "integer"
656s > 
656s > # To check names attribute
656s > dimnames <- list(letters[1:6], LETTERS[1:6])
656s > 
656s > # Test with and without dimnames on x
656s > for (setDimnames in c(TRUE, FALSE)) {
656s +   if (setDimnames) dimnames(x) <- dimnames
656s +   else dimnames(x) <- NULL
656s +   for (rows in index_cases) {
656s +     for (cols in index_cases) {
656s +       # Check names attribute
656s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
656s +         validateIndicesTestMatrix(x, rows, cols,
656s +                                   ftest = rowCounts, fsure = rowCounts_R,
656s +                                   value = 0, na.rm = TRUE, useNames = useNames)
656s +         validateIndicesTestMatrix(x, rows, cols,
656s +                                   fcoltest = colCounts, fsure = rowCounts_R,
656s +                                   value = 0, na.rm = TRUE, useNames = useNames)
656s +         for (value in c(0, NA_integer_)) {
656s +           validateIndicesTestMatrix(x, rows, cols,
656s +                                     ftest = rowCounts, fsure = rowCounts_R,
656s +                                     value = value, useNames = useNames)
656s +           validateIndicesTestMatrix(x, rows, cols,
656s +                                     fcoltest = colCounts, fsure = rowCounts_R,
656s +                                     value = value, useNames = useNames)
656s +         }
656s +       }
656s +     }
656s +   }
656s + }
661s > 
661s > x <- matrix(rep(letters, length.out = 6 * 6), nrow = 6, ncol = 6)
661s > x[2:3, 3:4] <- NA_character_
661s > # Test with and without dimnames on x
661s > for (setDimnames in c(TRUE, FALSE)) {
661s +   if (setDimnames) dimnames(x) <- dimnames
661s +   else dimnames(x) <- NULL
661s +   
661s +   count <- 0L
661s +   for (rows in index_cases) {
661s +     for (cols in index_cases) {
661s +       count <- count + 1L
661s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
661s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
661s +       useNames <- useNames[count %% length(useNames) + 1]
661s +       
661s +       validateIndicesTestMatrix(x, rows, cols,
661s +                                 ftest = rowCounts, fsure = rowCounts_R,
661s +                                 value = "g", na.rm = TRUE, useNames = useNames)
661s +       validateIndicesTestMatrix(x, rows, cols,
661s +                                 fcoltest = colCounts, fsure = rowCounts_R,
661s +                                 value = "g", na.rm = TRUE, useNames = useNames)
661s +       for (value in c("g", NA_character_)) {
661s +         validateIndicesTestMatrix(x, rows, cols,
661s +                                   ftest = rowCounts, fsure = rowCounts_R,
661s +                                   value = value, useNames = useNames)
661s +         validateIndicesTestMatrix(x, rows, cols,
661s +                                   fcoltest = colCounts, fsure = rowCounts_R,
661s +                                   value = value, useNames = useNames)
661s +       }
661s +     }
661s +   }
661s + }
664s > 
664s 
664s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
664s Copyright (C) 2024 The R Foundation for Statistical Computing
664s Platform: arm-unknown-linux-gnueabihf (32-bit)
664s 
664s R is free software and comes with ABSOLUTELY NO WARRANTY.
664s You are welcome to redistribute it under certain conditions.
664s Type 'license()' or 'licence()' for distribution details.
664s 
664s R is a collaborative project with many contributors.
664s Type 'contributors()' for more information and
664s 'citation()' on how to cite R or R packages in publications.
664s 
664s Type 'demo()' for some demos, 'help()' for on-line help, or
664s 'help.start()' for an HTML browser interface to help.
664s Type 'q()' to quit R.
664s 
664s > library("matrixStats")
664s > 
664s > rowCummins_R <- function(x, ..., useNames = NA) {
664s +   suppressWarnings({
664s +     y <- t(apply(x, MARGIN = 1L, FUN = cummin))
664s +   })
664s +  
664s +   # Preserve dimnames attribute?
664s +   dim(y) <- dim(x)
664s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
664s +   y
664s + }
664s > 
664s > rowCummaxs_R <- function(x, ..., useNames = NA) {
664s +   mode <- storage.mode(x)
664s +   # Change mode because a bug is detected on cummax for integer in R-3.2.0
664s +   storage.mode(x) <- "numeric"
664s +   suppressWarnings({
664s +     y <- t(apply(x, MARGIN = 1L, FUN = cummax))
664s +   })
664s +   
664s +   # Preserve dimnames attribute?
664s +   dim(y) <- dim(x)
664s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
664s +   
664s +   y
664s + }
664s > 
664s > 
664s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
664s > # With and without some NAs
664s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
664s > for (mode in c("logical", "integer", "double")) {
664s +   for (add_na in c(FALSE, TRUE)) {
664s +     cat("add_na = ", add_na, "\n", sep = "")
664s + 
664s +     x <- matrix(1:50, nrow = 10L, ncol = 5L)
664s +     diag(x) <- 0
664s +     if (add_na) {
664s +       x[3:7, c(2, 4)] <- NA_real_
664s +     }
664s +     cat("mode: ", mode, "\n", sep = "")
664s +     storage.mode(x) <- mode
664s +     str(x)
664s +     
664s +     # To check dimnames attribute
664s +     dimnames <- list(letters[1:10], LETTERS[1:5])
664s +     
664s +     # Test with and without dimnames on x
664s +     for (setDimnames in c(TRUE, FALSE)) {
664s +       if (setDimnames) dimnames(x) <- dimnames
664s +       else dimnames(x) <- NULL    
664s +       # Check names attribute
664s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
664s +         # Row/column ranges
664s +         r0 <- rowCummins_R(x, useNames = useNames)
664s +         r1 <- rowCummins(x, useNames = useNames)
664s +         r2 <- t(colCummins(t(x), useNames = useNames))
664s +         stopifnot(all.equal(r1, r2))
664s +         stopifnot(all.equal(r1, r0))
664s +         stopifnot(all.equal(r2, r0))
664s + 
664s +         r0 <- rowCummaxs_R(x, useNames = useNames)
664s +         r1 <- rowCummaxs(x, useNames = useNames)
664s +         r2 <- t(colCummaxs(t(x), useNames = useNames))
664s +         stopifnot(all.equal(r1, r2))
664s +         stopifnot(all.equal(r1, r0))
664s +         stopifnot(all.equal(r2, r0))
664s +       } # for (useNames ...)
664s +     } # for (setDimnames ...)
664s +   } # for (add_na ...)
664s + } # for (mode ...)
664s add_na = FALSE
664s mode: logical
664s  logi [1:10, 1:5] FALSE TRUE TRUE TRUE TRUE TRUE ...
664s add_na = TRUE
664s mode: logical
664s  logi [1:10, 1:5] FALSE TRUE TRUE TRUE TRUE TRUE ...
664s add_na = FALSE
664s mode: integer
664s  int [1:10, 1:5] 0 2 3 4 5 6 7 8 9 10 ...
664s add_na = TRUE
664s mode: integer
664s  int [1:10, 1:5] 0 2 3 4 5 6 7 8 9 10 ...
664s add_na = FALSE
664s mode: double
664s  num [1:10, 1:5] 0 2 3 4 5 6 7 8 9 10 ...
664s add_na = TRUE
664s mode: double
664s  num [1:10, 1:5] 0 2 3 4 5 6 7 8 9 10 ...
664s > 
664s > 
664s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
664s > # All NAs
664s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
664s > for (mode in c("logical", "integer", "double")) {
664s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
664s +   cat("mode: ", mode, "\n", sep = "")
664s +   storage.mode(x) <- mode
664s +   str(x)
664s +   
664s +   # Test with and without dimnames on x
664s +   for (setDimnames in c(TRUE, FALSE)) {
664s +     if (setDimnames) dimnames(x) <- dimnames
664s +     else dimnames(x) <- NULL    
664s +     # Check names attribute
664s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
664s +       r0 <- rowCummins_R(x, useNames = useNames)
664s +       r1 <- rowCummins(x, useNames = useNames)
664s +       r2 <- t(colCummins(t(x), useNames = useNames))
664s +       stopifnot(all.equal(r1, r2))
664s +       stopifnot(all.equal(r1, r0))
664s +       stopifnot(all.equal(r2, r0))
664s +       
664s +       r0 <- rowCummaxs_R(x, useNames = useNames)
664s +       r1 <- rowCummaxs(x, useNames = useNames)
664s +       r2 <- t(colCummaxs(t(x), useNames = useNames))
664s +       stopifnot(all.equal(r1, r2))
664s +       stopifnot(all.equal(r1, r0))
664s +       stopifnot(all.equal(r2, r0))
664s +     } # for (useNames ...)
664s +   } # for (setDimnames ...)
664s + } # for (mode ...)
664s mode: logical
664s  logi [1:10, 1:5] NA NA NA NA NA NA ...
664s mode: integer
664s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
665s mode: double
665s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
665s > 
665s > 
665s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
665s > # A 1x1 matrix
665s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
665s > for (mode in c("logical", "integer", "double")) {
665s +   x <- matrix(0, nrow = 1L, ncol = 1L)
665s +   cat("mode: ", mode, "\n", sep = "")
665s +   storage.mode(x) <- mode
665s +   str(x)
665s + 
665s +   # To check dimnames attribute
665s +   dimnames <- list("a", "A")
665s +   
665s +   # Test with and without dimnames on x
665s +   for (setDimnames in c(TRUE, FALSE)) {
665s +     if (setDimnames) dimnames(x) <- dimnames
665s +     else dimnames(x) <- NULL    
665s +     # Check names attribute
665s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
665s +       r0 <- rowCummins_R(x, useNames = useNames)
665s +       r1 <- rowCummins(x, useNames = useNames)
665s +       r2 <- t(colCummins(t(x), useNames = useNames))
665s +       stopifnot(all.equal(r1, r2))
665s +       stopifnot(all.equal(r1, r0))
665s +       stopifnot(all.equal(r2, r0))
665s +       
665s +       r0 <- rowCummaxs_R(x, useNames = useNames)
665s +       r1 <- rowCummaxs(x, useNames = useNames)
665s +       r2 <- t(colCummaxs(t(x), useNames = useNames))
665s +       stopifnot(all.equal(r1, r2))
665s +       stopifnot(all.equal(r1, r0))
665s +       stopifnot(all.equal(r2, r0))
665s +     } # for (useNames ...)
665s +   } # for (setDimnames ...)
665s + } # for (mode ...)
665s mode: logical
665s  logi [1, 1] FALSE
665s mode: integer
665s  int [1, 1] 0
665s mode: double
665s  num [1, 1] 0
665s > 
665s > 
665s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
665s > # Corner cases
665s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
665s > for (mode in c("logical", "integer", "double")) {
665s +   cat("mode: ", mode, "\n", sep = "")
665s +   value <- 0
665s +   storage.mode(value) <- mode
665s +   value0 <- if (mode == "logical") 0L else value
665s + 
665s +   # A 0x0 matrix
665s +   x <- matrix(value, nrow = 0L, ncol = 0L)
665s +   str(x)
665s +   r0 <- matrix(value0, nrow = nrow(x), ncol = ncol(x))
665s +   r1 <- rowCummins(x)
665s +   r2 <- t(colCummins(t(x)))
665s +   stopifnot(all.equal(r1, r2))
665s +   stopifnot(all.equal(r1, r0))
665s +   stopifnot(all.equal(r2, r0))
665s + 
665s +   # A 0xK matrix
665s +   x <- matrix(value, nrow = 0L, ncol = 5L)
665s +   str(x)
665s +   colnames <- LETTERS[1:5]
665s +   # Test with and without dimnames on x
665s +   for (setDimnames in c(TRUE, FALSE)) {
665s +     if (setDimnames) colnames(x) <- colnames
665s +     else dimnames(x) <- NULL
665s +     # Check names attribute
665s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
665s +       r0 <- rowCummins_R(x, useNames = useNames)
665s +       r1 <- rowCummins(x, useNames = useNames)
665s +       r2 <- t(colCummins(t(x), useNames = useNames))
665s +       stopifnot(all.equal(r1, r2))
665s +       stopifnot(all.equal(r1, r0))
665s +       stopifnot(all.equal(r2, r0))
665s +       r0 <- rowCummaxs_R(x, useNames = useNames)
665s +       r1 <- rowCummaxs(x, useNames = useNames)
665s +       r2 <- t(colCummaxs(t(x), useNames = useNames))
665s +       stopifnot(all.equal(r1, r2))
665s +       stopifnot(all.equal(r1, r0))
665s +       stopifnot(all.equal(r2, r0))
665s +     } # for (useNames ...)
665s +   } # for (setDimnames ...)
665s + 
665s +   # A Nx0 matrix
665s +   x <- matrix(value, nrow = 5L, ncol = 0L)
665s +   str(x)
665s +   rownames <- LETTERS[1:5]
665s +   # Test with and without dimnames on x
665s +   for (setDimnames in c(TRUE, FALSE)) {
665s +     if (setDimnames) rownames(x) <- rownames
665s +     else dimnames(x) <- NULL
665s +     # Check names attribute
665s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
665s +       r0 <- rowCummins_R(x, useNames = useNames)
665s +       r1 <- rowCummins(x, useNames = useNames)
665s +       r2 <- t(colCummins(t(x), useNames = useNames))
665s +       stopifnot(all.equal(r1, r2))
665s +       stopifnot(all.equal(r1, r0))
665s +       stopifnot(all.equal(r2, r0))
665s +       
665s +       r0 <- rowCummaxs_R(x, useNames = useNames)
665s +       r1 <- rowCummaxs(x, useNames = useNames)
665s +       r2 <- t(colCummaxs(t(x), useNames = useNames))
665s +       stopifnot(all.equal(r1, r2))
665s +       stopifnot(all.equal(r1, r0))
665s +       stopifnot(all.equal(r2, r0))
665s +     } # for (useNames ...)
665s +   } # for (setDimnames ...)
665s + } # for (mode ...)
665s mode: logical
665s  logi[0 , 0 ] 
665s  logi[0 , 1:5] 
665s  logi[1:5, 0 ] 
665s mode: integer
665s  int[0 , 0 ] 
665s  int[0 , 1:5] 
665s  int[1:5, 0 ] 
665s mode: double
665s  num[0 , 0 ] 
665s  num[0 , 1:5] 
665s  num[1:5, 0 ] 
665s > 
665s 
665s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
665s Copyright (C) 2024 The R Foundation for Statistical Computing
665s Platform: arm-unknown-linux-gnueabihf (32-bit)
665s 
665s R is free software and comes with ABSOLUTELY NO WARRANTY.
665s You are welcome to redistribute it under certain conditions.
665s Type 'license()' or 'licence()' for distribution details.
665s 
665s R is a collaborative project with many contributors.
665s Type 'contributors()' for more information and
665s 'citation()' on how to cite R or R packages in publications.
665s 
665s Type 'demo()' for some demos, 'help()' for on-line help, or
665s 'help.start()' for an HTML browser interface to help.
665s Type 'q()' to quit R.
665s 
665s > library("matrixStats")
665s > 
665s > rowCummins_R <- function(x, ..., useNames = NA) {
665s +   suppressWarnings({
665s +     y <- t(apply(x, MARGIN = 1L, FUN = cummin))
665s +   })
665s +   
665s +   # Preserve dimnames attribute?
665s +   dim(y) <- dim(x)
665s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
665s +   
665s +   y
665s + }
665s > 
665s > rowCummaxs_R <- function(x, ..., useNames = NA) {
665s +   mode <- storage.mode(x)
665s +   # Change mode because a bug is detected on cummax for integer in R-3.2.0
665s +   storage.mode(x) <- "numeric"
665s +   suppressWarnings({
665s +     y <- t(apply(x, MARGIN = 1L, FUN = cummax))
665s +   })
665s +   
665s +   # Preserve dimnames attribute?
665s +   dim(y) <- dim(x)
665s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
665s +   
665s +   storage.mode(y) <- mode
665s +   y
665s + }
665s > 
665s > 
665s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
665s > # Subsetted tests
665s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
665s > source("utils/validateIndicesFramework.R")
665s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
665s > storage.mode(x) <- "integer"
665s > 
665s > # To check dimnames attribute
665s > dimnames <- list(letters[1:6], LETTERS[1:6])
665s > 
665s > # Test with and without dimnames on x
665s > for (setDimnames in c(TRUE, FALSE)) {
665s +   if (setDimnames) dimnames(x) <- dimnames
665s +   else dimnames(x) <- NULL
665s +   for (rows in index_cases) {
665s +     for (cols in index_cases) {
665s +       # Check names attribute
665s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
665s +         validateIndicesTestMatrix(x, rows, cols,
665s +                                   ftest = rowCummins, fsure = rowCummins_R, useNames = useNames,verbose=TRUE)
665s +         validateIndicesTestMatrix(x, rows, cols,
665s +                                   ftest = function(x, rows, cols, ..., useNames) {
665s +           t(colCummins(t(x), rows = cols, cols = rows, useNames = useNames))
665s +         }, fsure = rowCummins_R, useNames = useNames)
665s + 
665s +         validateIndicesTestMatrix(x, rows, cols,
665s +                                   ftest = rowCummaxs, fsure = rowCummaxs_R, useNames = useNames)
665s +         validateIndicesTestMatrix(x, rows, cols,
665s +                                   ftest = function(x, rows, cols, ..., useNames) {
665s +           t(colCummaxs(t(x), rows = cols, cols = rows, useNames = useNames))
665s +         }, fsure = rowCummaxs_R, useNames = useNames)
665s +       }
665s +     }
665s +   }
665s + }
671s > 
671s 
671s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
671s Copyright (C) 2024 The R Foundation for Statistical Computing
671s Platform: arm-unknown-linux-gnueabihf (32-bit)
671s 
671s R is free software and comes with ABSOLUTELY NO WARRANTY.
671s You are welcome to redistribute it under certain conditions.
671s Type 'license()' or 'licence()' for distribution details.
671s 
671s R is a collaborative project with many contributors.
671s Type 'contributors()' for more information and
671s 'citation()' on how to cite R or R packages in publications.
671s 
671s Type 'demo()' for some demos, 'help()' for on-line help, or
671s 'help.start()' for an HTML browser interface to help.
671s Type 'q()' to quit R.
671s 
671s > library("matrixStats")
671s > 
671s > rowCumprods_R <- function(x, ..., useNames = NA) {
671s +   suppressWarnings({
671s +     y <- t(apply(x, MARGIN = 1L, FUN = cumprod))
671s +   })
671s +   
671s +   # Preserve dimnames attribute?
671s +   dim(y) <- dim(x)
671s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
671s +   
671s +   y
671s + }
671s > 
671s > 
671s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
671s > # With and without some NAs
671s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
671s > for (mode in c("logical", "integer", "double")) {
671s +   for (add_na in c(FALSE, TRUE)) {
671s +     cat("add_na = ", add_na, "\n", sep = "")
671s + 
671s +     x <- matrix(1:50, nrow = 10L, ncol = 5L)
671s +     if (add_na) {
671s +       x[3:7, c(2, 4)] <- NA_real_
671s +     }
671s +     cat("mode: ", mode, "\n", sep = "")
671s +     storage.mode(x) <- mode
671s +     str(x)
671s +     
671s +     # To check dimnames attribute
671s +     dimnames <- list(letters[1:10], LETTERS[1:5])
671s +     
671s +     # Test with and without dimnames on x
671s +     for (setDimnames in c(TRUE, FALSE)) {
671s +       if (setDimnames) dimnames(x) <- dimnames
671s +       else dimnames(x) <- NULL    
671s +       # Check names attribute
671s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
671s +         # Row/column ranges
671s +         r0 <- rowCumprods_R(x, useNames = useNames)
671s +         r1 <- rowCumprods(x, useNames = useNames)
671s +         r2 <- t(colCumprods(t(x), useNames = useNames))
671s +         stopifnot(all.equal(r1, r2))
671s +         stopifnot(all.equal(r1, r0))
671s +         stopifnot(all.equal(r2, r0))
671s +       } # for (useNames ...)
671s +     } # for (setDimnames ...)
671s +   } # for (add_na ...)
671s + } # for (mode ...)
671s add_na = FALSE
671s mode: logical
671s  logi [1:10, 1:5] TRUE TRUE TRUE TRUE TRUE TRUE ...
671s add_na = TRUE
671s mode: logical
671s  logi [1:10, 1:5] TRUE TRUE TRUE TRUE TRUE TRUE ...
671s add_na = FALSE
671s mode: integer
671s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
671s add_na = TRUE
671s mode: integer
671s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
671s add_na = FALSE
671s mode: double
671s  num [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
671s add_na = TRUE
671s mode: double
671s  num [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
671s > 
671s > 
671s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
671s > # All NAs
671s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
671s > for (mode in c("logical", "integer", "double")) {
671s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
671s +   cat("mode: ", mode, "\n", sep = "")
671s +   storage.mode(x) <- mode
671s +   str(x)
671s +   
671s +   # Test with and without dimnames on x
671s +   for (setDimnames in c(TRUE, FALSE)) {
671s +     if (setDimnames) dimnames(x) <- dimnames
671s +     else dimnames(x) <- NULL    
671s +     # Check names attribute
671s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
671s +       # Row/column ranges
671s +       r0 <- rowCumprods_R(x, useNames = useNames)
671s +       r1 <- rowCumprods(x, useNames = useNames)
671s +       r2 <- t(colCumprods(t(x), useNames = useNames))
671s +       stopifnot(all.equal(r1, r2))
671s +       stopifnot(all.equal(r1, r0))
671s +       stopifnot(all.equal(r2, r0))
671s +     } # for (useNames ...)
671s +   } # for (setDimnames ...)
671s + } # for (mode ...)
672s mode: logical
672s  logi [1:10, 1:5] NA NA NA NA NA NA ...
672s mode: integer
672s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
672s mode: double
672s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
672s > 
672s > 
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > # A 1x1 matrix
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > for (mode in c("logical", "integer", "double")) {
672s +   x <- matrix(0, nrow = 1L, ncol = 1L)
672s +   cat("mode: ", mode, "\n", sep = "")
672s +   storage.mode(x) <- mode
672s +   str(x)
672s +   
672s +   dimnames <- list("a", "A")
672s +   # Test with and without dimnames on x
672s +   for (setDimnames in c(TRUE, FALSE)) {
672s +     if (setDimnames) dimnames(x) <- dimnames
672s +     else dimnames(x) <- NULL    
672s +     # Check names attribute
672s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
672s +       # Row/column ranges
672s +       r0 <- rowCumprods_R(x, useNames = useNames)
672s +       r1 <- rowCumprods(x, useNames = useNames)
672s +       r2 <- t(colCumprods(t(x), useNames = useNames))
672s +       stopifnot(all.equal(r1, r2))
672s +       stopifnot(all.equal(r1, r0))
672s +       stopifnot(all.equal(r2, r0))
672s +     } # for (useNames ...)
672s +   } # for (setDimnames ...)
672s + }
672s mode: logical
672s  logi [1, 1] FALSE
672s mode: integer
672s  int [1, 1] 0
672s mode: double
672s  num [1, 1] 0
672s > 
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > # BUG FIX TEST: Assert zeros don't trump NAs in integer matrices
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > for (mode in c("logical", "integer", "double")) {
672s +   x <- matrix(NA_real_, nrow = 3L, ncol = 2L)
672s +   x[1, 2] <- 0
672s +   x[2, 2] <- 1
672s +   x[3, 1] <- 0
672s +   storage.mode(x) <- mode
672s +   cat("mode: ", mode, "\n", sep = "")
672s +   str(x)
672s +   
672s +   dimnames <- list(letters[1:3], LETTERS[1:2])
672s +   # Test with and without dimnames on x
672s +   for (setDimnames in c(TRUE, FALSE)) {
672s +     if (setDimnames) dimnames(x) <- dimnames
672s +     else dimnames(x) <- NULL    
672s +     # Check names attribute
672s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
672s +       # Row/column ranges
672s +       r0 <- rowCumprods_R(x, useNames = useNames)
672s +       r1 <- rowCumprods(x, useNames = useNames)
672s +       r2 <- t(colCumprods(t(x), useNames = useNames))
672s +       stopifnot(all.equal(r1, r2))
672s +       stopifnot(all.equal(r1, r0))
672s +       stopifnot(all.equal(r2, r0))
672s +     } # for (useNames ...)
672s +   } # for (setDimnames ...)
672s + }
672s mode: logical
672s  logi [1:3, 1:2] NA NA FALSE FALSE TRUE NA
672s mode: integer
672s  int [1:3, 1:2] NA NA 0 0 1 NA
672s mode: double
672s  num [1:3, 1:2] NA NA 0 0 1 NA
672s > 
672s > 
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > # Corner cases
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > for (mode in c("logical", "integer", "double")) {
672s +   cat("mode: ", mode, "\n", sep = "")
672s +   value <- 0
672s +   storage.mode(value) <- mode
672s +   if (mode == "logical") value2 <- 0L
672s + 
672s +   # A 0x0 matrix
672s +   x <- matrix(value, nrow = 0L, ncol = 0L)
672s +   str(x)
672s +   r0 <- matrix(value2, nrow = nrow(x), ncol = ncol(x))
672s +   r1 <- rowCumprods(x)
672s +   r2 <- t(colCumprods(t(x)))
672s +   stopifnot(all.equal(r1, r2))
672s +   stopifnot(all.equal(r1, r0))
672s +   stopifnot(all.equal(r2, r0))
672s + 
672s +   # A 0xK matrix
672s +   x <- matrix(value, nrow = 0L, ncol = 5L)
672s +   str(x)
672s +   colnames <- LETTERS[1:5]
672s +   # Test with and without dimnames on x
672s +   for (setDimnames in c(TRUE, FALSE)) {
672s +     if (setDimnames) colnames(x) <- colnames
672s +     else dimnames(x) <- NULL
672s +     # Check names attribute
672s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
672s +       r0 <- rowCumprods_R(x, useNames = useNames)
672s +       r1 <- rowCumprods(x, useNames = useNames)
672s +       r2 <- t(rowCumprods(t(x), useNames = useNames))
672s +       stopifnot(all.equal(r1, r2))
672s +       stopifnot(all.equal(r1, r0))
672s +       stopifnot(all.equal(r2, r0))
672s +     } # for (useNames ...)
672s +   } # for (setDimnames ...)
672s + 
672s +   # A Nx0 matrix
672s +   x <- matrix(value, nrow = 5L, ncol = 0L)
672s +   str(x)
672s +   rownames <- LETTERS[1:5]
672s +   # Test with and without dimnames on x
672s +   for (setDimnames in c(TRUE, FALSE)) {
672s +     if (setDimnames) rownames(x) <- rownames
672s +     else dimnames(x) <- NULL
672s +     # Check names attribute
672s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
672s +       r0 <- rowCumprods_R(x, useNames = useNames)
672s +       r1 <- rowCumprods(x, useNames = useNames)
672s +       r2 <- t(rowCumprods(t(x), useNames = useNames))
672s +       stopifnot(all.equal(r1, r2))
672s +       stopifnot(all.equal(r1, r0))
672s +       stopifnot(all.equal(r2, r0))
672s +     } # for (useNames ...)
672s +   } # for (setDimnames ...)
672s + } # for (mode ...)
672s mode: logical
672s  logi[0 , 0 ] 
672s  logi[0 , 1:5] 
672s  logi[1:5, 0 ] 
672s mode: integer
672s  int[0 , 0 ] 
672s  int[0 , 1:5] 
672s  int[1:5, 0 ] 
672s mode: double
672s  num[0 , 0 ] 
672s  num[0 , 1:5] 
672s  num[1:5, 0 ] 
672s > 
672s 
672s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
672s Copyright (C) 2024 The R Foundation for Statistical Computing
672s Platform: arm-unknown-linux-gnueabihf (32-bit)
672s 
672s R is free software and comes with ABSOLUTELY NO WARRANTY.
672s You are welcome to redistribute it under certain conditions.
672s Type 'license()' or 'licence()' for distribution details.
672s 
672s R is a collaborative project with many contributors.
672s Type 'contributors()' for more information and
672s 'citation()' on how to cite R or R packages in publications.
672s 
672s Type 'demo()' for some demos, 'help()' for on-line help, or
672s 'help.start()' for an HTML browser interface to help.
672s Type 'q()' to quit R.
672s 
672s > library("matrixStats")
672s > 
672s > rowCumprods_R <- function(x, ..., useNames = NA) {
672s +   suppressWarnings({
672s +     y <- t(apply(x, MARGIN = 1L, FUN = cumprod))
672s +   })
672s + 
672s +   # Preserve dimnames attribute?
672s +   dim(y) <- dim(x)
672s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
672s +   
672s +   y
672s + }
672s > 
672s > 
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > # Subsetted tests
672s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
672s > source("utils/validateIndicesFramework.R")
672s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
672s > storage.mode(x) <- "integer"
672s > 
672s > # To check dimnames attribute
672s > dimnames <- list(letters[1:6], LETTERS[1:6])
672s > 
672s > # Test with and without dimnames on x
672s > for (setDimnames in c(TRUE, FALSE)) {
672s +   if (setDimnames) dimnames(x) <- dimnames
672s +   else dimnames(x) <- NULL
672s +   for (rows in index_cases) {
672s +     for (cols in index_cases) {
672s +       # Check names attribute
672s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
672s +         validateIndicesTestMatrix(x, rows, cols,
672s +                                   ftest = rowCumprods, fsure = rowCumprods_R, useNames = useNames)
672s +         validateIndicesTestMatrix(x, rows, cols,
672s +                                   ftest = function(x, rows, cols, ..., useNames) {
672s +           t(colCumprods(t(x), rows = cols, cols = rows, useNames = useNames))
672s +         }, fsure = rowCumprods_R, useNames = useNames)
672s +       }
672s +     }
672s +   }
672s + }
675s > 
675s 
675s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
675s Copyright (C) 2024 The R Foundation for Statistical Computing
675s Platform: arm-unknown-linux-gnueabihf (32-bit)
675s 
675s R is free software and comes with ABSOLUTELY NO WARRANTY.
675s You are welcome to redistribute it under certain conditions.
675s Type 'license()' or 'licence()' for distribution details.
675s 
675s R is a collaborative project with many contributors.
675s Type 'contributors()' for more information and
675s 'citation()' on how to cite R or R packages in publications.
675s 
675s Type 'demo()' for some demos, 'help()' for on-line help, or
675s 'help.start()' for an HTML browser interface to help.
675s Type 'q()' to quit R.
675s 
676s > library("matrixStats")
676s > 
676s > rowCumsums_R <- function(x, ..., useNames = NA) {
676s +   suppressWarnings({
676s +     y <- t(apply(x, MARGIN = 1L, FUN = cumsum))
676s +   })
676s +   
676s +   # Preserve dimnames attribute?
676s +   dim(y) <- dim(x)
676s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
676s +   
676s +   y
676s + }
676s > 
676s > 
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > # With and without some NAs
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > dimnames <- list(letters[1:10], LETTERS[1:5]) # to check dimnames attribute
676s > for (mode in c("logical", "integer", "double")) {
676s +   for (add_na in c(FALSE, TRUE)) {
676s +     cat("add_na = ", add_na, "\n", sep = "")
676s + 
676s +     x <- matrix(1:50, nrow = 10L, ncol = 5L)
676s +     if (add_na) {
676s +       x[3:7, c(2, 4)] <- NA_real_
676s +     }
676s +     cat("mode: ", mode, "\n", sep = "")
676s +     storage.mode(x) <- mode
676s +     str(x)
676s +     
676s +     # Test with and without dimnames on x
676s +     for (setDimnames in c(TRUE, FALSE)) {
676s +       if (setDimnames) dimnames(x) <- dimnames
676s +       else dimnames(x) <- NULL    
676s +       # Check names attribute
676s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
676s +         # Row/column ranges
676s +         r0 <- rowCumsums_R(x, useNames = useNames)
676s +         r1 <- rowCumsums(x, useNames = useNames)
676s +         r2 <- t(colCumsums(t(x), useNames = useNames))
676s +         stopifnot(all.equal(r1, r2))
676s +         stopifnot(all.equal(r1, r0))
676s +         stopifnot(all.equal(r2, r0))
676s +       } # for (useNames ...)
676s +     } # for (setDimnames ...)
676s +   } # for (add_na ...)
676s + }
676s add_na = FALSE
676s mode: logical
676s  logi [1:10, 1:5] TRUE TRUE TRUE TRUE TRUE TRUE ...
676s add_na = TRUE
676s mode: logical
676s  logi [1:10, 1:5] TRUE TRUE TRUE TRUE TRUE TRUE ...
676s add_na = FALSE
676s mode: integer
676s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
676s add_na = TRUE
676s mode: integer
676s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
676s add_na = FALSE
676s mode: double
676s  num [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
676s add_na = TRUE
676s mode: double
676s  num [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
676s > 
676s > 
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > # All NAs
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > for (mode in c("logical", "integer", "double")) {
676s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
676s +   cat("mode: ", mode, "\n", sep = "")
676s +   storage.mode(x) <- mode
676s +   str(x)
676s +   
676s +   # Test with and without dimnames on x
676s +   for (setDimnames in c(TRUE, FALSE)) {
676s +     if (setDimnames) dimnames(x) <- dimnames
676s +     else dimnames(x) <- NULL    
676s +     # Check names attribute
676s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
676s +       # Row/column ranges
676s +       r0 <- rowCumsums_R(x, useNames = useNames)
676s +       r1 <- rowCumsums(x, useNames = useNames)
676s +       r2 <- t(colCumsums(t(x), useNames = useNames))
676s +       stopifnot(all.equal(r1, r2))
676s +       stopifnot(all.equal(r1, r0))
676s +       stopifnot(all.equal(r2, r0))
676s +     } # for (useNames ...)
676s +   } # for (setDimnames ...)
676s + } # for (mode ...)
676s mode: logical
676s  logi [1:10, 1:5] NA NA NA NA NA NA ...
676s mode: integer
676s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
676s mode: double
676s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
676s > 
676s > 
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > # A 1x1 matrix
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > dimnames <- list("a", "A") # to check dimnames attribute
676s > for (mode in c("logical", "integer", "double")) {
676s +   x <- matrix(0, nrow = 1L, ncol = 1L)
676s +   cat("mode: ", mode, "\n", sep = "")
676s +   storage.mode(x) <- mode
676s +   str(x)
676s + 
676s +   r0 <- rowCumsums_R(x)
676s +   r1 <- rowCumsums(x)
676s +   r2 <- t(colCumsums(t(x)))
676s +   stopifnot(all.equal(r1, r2))
676s +   stopifnot(all.equal(r1, r0))
676s +   stopifnot(all.equal(r2, r0))
676s +   
676s +   # Check dimnames attribute
676s +   dimnames(x) <- dimnames
676s +   # r0 <- rowCumsums_R(x)
676s +   # > r0
676s +   #        a
676s +   #   [1,] 0
676s +   r1 <- rowCumsums(x, useNames = TRUE)
676s +   r2 <- t(colCumsums(t(x), useNames = TRUE))
676s +   stopifnot(identical(dimnames(r1), dimnames))
676s +   stopifnot(identical(dimnames(r2), dimnames))    
676s +   dimnames(x) <- NULL
676s + }
676s mode: logical
676s  logi [1, 1] FALSE
676s mode: integer
676s  int [1, 1] 0
676s mode: double
676s  num [1, 1] 0
676s > 
676s > 
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > # Corner cases
676s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
676s > names <- LETTERS[1:5] # to check dimnames attribute
676s > for (mode in c("logical", "integer", "double")) {
676s +   cat("mode: ", mode, "\n", sep = "")
676s +   value <- 0
676s +   storage.mode(value) <- mode
676s +   value2 <- value
676s +   if (mode == "logical") value2 <- 0L
676s +   
676s +   # A 0x0 matrix
676s +   x <- matrix(value, nrow = 0L, ncol = 0L)
676s +   str(x)
676s +   r0 <- matrix(value2, nrow = nrow(x), ncol = ncol(x))
676s +   r1 <- rowCumsums(x)
676s +   r2 <- t(colCumsums(t(x)))
676s +   stopifnot(all.equal(r1, r2))
676s +   stopifnot(all.equal(r1, r0))
676s +   stopifnot(all.equal(r2, r0))
676s + 
676s +   # A 0xK matrix
676s +   x <- matrix(value, nrow = 0L, ncol = 5L)
676s +   str(x)
676s +   colnames <- LETTERS[1:5]
676s +   # Test with and without dimnames on x
676s +   for (setDimnames in c(TRUE, FALSE)) {
676s +     if (setDimnames) colnames(x) <- colnames
676s +     else dimnames(x) <- NULL
676s +     # Check names attribute
676s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
676s +       r0 <- rowCumsums_R(x, useNames = useNames)
676s +       r1 <- rowCumsums(x, useNames = useNames)
676s +       r2 <- t(rowCumsums(t(x), useNames = useNames))
676s +       stopifnot(all.equal(r1, r2))
676s +       stopifnot(all.equal(r1, r0))
676s +       stopifnot(all.equal(r2, r0))
676s +     } # for (useNames ...)
676s +   } # for (setDimnames ...)
676s + 
676s +   # A Nx0 matrix
676s +   x <- matrix(value, nrow = 5L, ncol = 0L)
676s +   str(x)
676s +   rownames <- LETTERS[1:5]
676s +   # Test with and without dimnames on x
676s +   for (setDimnames in c(TRUE, FALSE)) {
676s +     if (setDimnames) rownames(x) <- rownames
676s +     else dimnames(x) <- NULL
676s +     # Check names attribute
676s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
676s +       r0 <- rowCumsums_R(x, useNames = useNames)
676s +       r1 <- rowCumsums(x, useNames = useNames)
676s +       r2 <- t(rowCumsums(t(x), useNames = useNames))
676s +       stopifnot(all.equal(r1, r2))
676s +       stopifnot(all.equal(r1, r0))
676s +       stopifnot(all.equal(r2, r0))
676s +     } # for (useNames ...)
676s +   } # for (setDimnames ...)
676s + } # for (mode ...)
676s mode: logical
676s  logi[0 , 0 ] 
676s  logi[0 , 1:5] 
676s  logi[1:5, 0 ] 
676s mode: integer
676s  int[0 , 0 ] 
676s  int[0 , 1:5] 
676s  int[1:5, 0 ] 
676s mode: double
676s  num[0 , 0 ] 
676s  num[0 , 1:5] 
676s  num[1:5, 0 ] 
676s > 
676s 
676s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
676s Copyright (C) 2024 The R Foundation for Statistical Computing
676s Platform: arm-unknown-linux-gnueabihf (32-bit)
676s 
676s R is free software and comes with ABSOLUTELY NO WARRANTY.
676s You are welcome to redistribute it under certain conditions.
676s Type 'license()' or 'licence()' for distribution details.
676s 
676s R is a collaborative project with many contributors.
676s Type 'contributors()' for more information and
676s 'citation()' on how to cite R or R packages in publications.
676s 
676s Type 'demo()' for some demos, 'help()' for on-line help, or
676s 'help.start()' for an HTML browser interface to help.
676s Type 'q()' to quit R.
676s 
677s > library("matrixStats")
677s > 
677s > rowCumsums_R <- function(x, ..., useNames = NA) {
677s +   suppressWarnings({
677s +     y <- t(apply(x, MARGIN = 1L, FUN = cumsum))
677s +   })
677s +   
677s +   # Preserve dimnames attribute?
677s +   dim(y) <- dim(x)
677s +   dimnames(y) <- if (isTRUE(useNames)) dimnames(x) else NULL
677s + 
677s +   y
677s + }
677s > 
677s > 
677s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
677s > # Subsetted tests
677s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
677s > source("utils/validateIndicesFramework.R")
677s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
677s > storage.mode(x) <- "integer"
677s > 
677s > # To check dimnames attribute
677s > dimnames <- list(letters[1:6], LETTERS[1:6])
677s > 
677s > # Test with and without dimnames on x
677s > for (setDimnames in c(TRUE, FALSE)) {
677s +   if (setDimnames) dimnames(x) <- dimnames
677s +   else dimnames(x) <- NULL
677s +   for (rows in index_cases) {
677s +     for (cols in index_cases) {
677s +       # Check names attribute
677s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
677s +         validateIndicesTestMatrix(x, rows, cols,
677s +                                   ftest = rowCumsums, fsure = rowCumsums_R, useNames = useNames)
677s +         validateIndicesTestMatrix(x, rows, cols,
677s +                                   ftest = function(x, rows, cols, ..., useNames) {
677s +           t(colCumsums(t(x), rows = cols, cols = rows, useNames = useNames))
677s +         }, fsure = rowCumsums_R, useNames = useNames)
677s +       }
677s +     }
677s +   }
677s + }
680s > 
680s 
680s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
680s Copyright (C) 2024 The R Foundation for Statistical Computing
680s Platform: arm-unknown-linux-gnueabihf (32-bit)
680s 
680s R is free software and comes with ABSOLUTELY NO WARRANTY.
680s You are welcome to redistribute it under certain conditions.
680s Type 'license()' or 'licence()' for distribution details.
680s 
680s R is a collaborative project with many contributors.
680s Type 'contributors()' for more information and
680s 'citation()' on how to cite R or R packages in publications.
680s 
680s Type 'demo()' for some demos, 'help()' for on-line help, or
680s 'help.start()' for an HTML browser interface to help.
680s Type 'q()' to quit R.
680s 
680s > library("matrixStats")
680s > 
680s > rowDiffs_R <- function(x, lag = 1L, differences = 1L, ..., useNames = NA) {
680s +   ncol2 <- ncol(x) - lag * differences
680s +   if (ncol2 <= 0) {
680s +     y <- matrix(x[integer(0L)], nrow = nrow(x), ncol = 0L)
680s +     # Preserve names attribute
680s +     if (isTRUE(useNames) && !is.null(rownames(x))) rownames(y) <- rownames(x)
680s +     return(y)
680s +   }
680s +   suppressWarnings({
680s +     y <- apply(x, MARGIN = 1L, FUN = diff, lag = lag, differences = differences)
680s +   })
680s +   y <- t(y)
680s +   
680s +   # Preserve dimnames attribute
680s +   dim(y) <- c(nrow(x), ncol2)
680s +   if (isTRUE(useNames) && !is.null(dimnames(x))) {
680s +     colnames <- colnames(x)
680s +     if (!is.null(colnames)) {
680s +       len <- length(colnames)
680s +       colnames <- colnames[(len - ncol2 + 1):len]
680s +     }
680s +     dimnames(y) <- list(rownames(x), colnames)      
680s +   }
680s +   else dimnames(y) <- NULL
680s +   
680s +   y
680s + }
680s > 
680s > 
680s > set.seed(0x42)
680s > 
680s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
680s > # With and without some NAs
680s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
680s > for (mode in c("integer", "double")) {
680s +   cat("mode: ", mode, "\n", sep = "")
680s + 
680s +   for (add_na in c(FALSE, TRUE)) {
680s +     cat("add_na = ", add_na, "\n", sep = "")
680s + 
680s +     x <- matrix(sample(10 * 8) + 0.1, nrow = 10L, ncol = 8L)
680s +     if (add_na) {
680s +       x[3:7, c(2, 4)] <- NA_real_
680s +     }
680s +     storage.mode(x) <- mode
680s +     str(x)
680s +     
680s +     dimnames <- list(letters[1:10], LETTERS[1:8])
680s + 
680s +     # Test with and without dimnames on x
680s +     for (setDimnames in c(TRUE, FALSE)) {
680s +       if (setDimnames) dimnames(x) <- dimnames
680s +       else dimnames(x) <- NULL
680s +       # Check dimnames attribute
680s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
680s +         for (lag in 1:4) {
680s +           for (differences in 1:3) {
680s +             cat(sprintf("mode: %s, lag = %d, differences = %d\n",
680s +                         mode, lag, differences))
680s +             # Row/column ranges
680s +             r0 <- rowDiffs_R(x, lag = lag, differences = differences, useNames = useNames)
680s +             r1 <- rowDiffs(x, lag = lag, differences = differences, useNames = useNames)
680s +             r2 <- t(colDiffs(t(x), lag = lag, differences = differences, useNames = useNames))
680s +             stopifnot(all.equal(r1, r0))
680s +             stopifnot(all.equal(r2, r0))
680s +             stopifnot(all.equal(r1, r2))
680s +           }
680s +         }
680s +       } # for (useNames ...)
680s +     } # for (setDimnames ...)
680s +   } # for (add_na ...)
680s + } # for (mode ...)
680s mode: integer
680s add_na = FALSE
680s  int [1:10, 1:8] 68 26 29 47 48 10 1 38 16 40 ...
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s add_na = TRUE
680s  int [1:10, 1:8] 80 71 7 52 79 22 31 10 29 63 ...
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: integer, lag = 1, differences = 1
680s mode: integer, lag = 1, differences = 2
680s mode: integer, lag = 1, differences = 3
680s mode: integer, lag = 2, differences = 1
680s mode: integer, lag = 2, differences = 2
680s mode: integer, lag = 2, differences = 3
680s mode: integer, lag = 3, differences = 1
680s mode: integer, lag = 3, differences = 2
680s mode: integer, lag = 3, differences = 3
680s mode: integer, lag = 4, differences = 1
680s mode: integer, lag = 4, differences = 2
680s mode: integer, lag = 4, differences = 3
680s mode: double
680s add_na = FALSE
680s  num [1:10, 1:8] 36.1 15.1 27.1 63.1 62.1 58.1 28.1 19.1 41.1 3.1 ...
680s mode: double, lag = 1, differences = 1
680s mode: double, lag = 1, differences = 2
680s mode: double, lag = 1, differences = 3
680s mode: double, lag = 2, differences = 1
680s mode: double, lag = 2, differences = 2
680s mode: double, lag = 2, differences = 3
680s mode: double, lag = 3, differences = 1
680s mode: double, lag = 3, differences = 2
680s mode: double, lag = 3, differences = 3
680s mode: double, lag = 4, differences = 1
680s mode: double, lag = 4, differences = 2
680s mode: double, lag = 4, differences = 3
680s mode: double, lag = 1, differences = 1
680s mode: double, lag = 1, differences = 2
680s mode: double, lag = 1, differences = 3
680s mode: double, lag = 2, differences = 1
680s mode: double, lag = 2, differences = 2
680s mode: double, lag = 2, differences = 3
680s mode: double, lag = 3, differences = 1
680s mode: double, lag = 3, differences = 2
680s mode: double, lag = 3, differences = 3
680s mode: double, lag = 4, differences = 1
680s mode: double, lag = 4, differences = 2
680s mode: double, lag = 4, differences = 3
680s mode: double, lag = 1, differences = 1
680s mode: double, lag = 1, differences = 2
680s mode: double, lag = 1, differences = 3
680s mode: double, lag = 2, differences = 1
680s mode: double, lag = 2, differences = 2
680s mode: double, lag = 2, differences = 3
680s mode: double, lag = 3, differences = 1
680s mode: double, lag = 3, differences = 2
680s mode: double, lag = 3, differences = 3
680s mode: double, lag = 4, differences = 1
680s mode: double, lag = 4, differences = 2
680s mode: double, lag = 4, differences = 3
680s mode: double, lag = 1, differences = 1
680s mode: double, lag = 1, differences = 2
680s mode: double, lag = 1, differences = 3
680s mode: double, lag = 2, differences = 1
680s mode: double, lag = 2, differences = 2
680s mode: double, lag = 2, differences = 3
680s mode: double, lag = 3, differences = 1
680s mode: double, lag = 3, differences = 2
680s mode: double, lag = 3, differences = 3
680s mode: double, lag = 4, differences = 1
680s mode: double, lag = 4, differences = 2
680s mode: double, lag = 4, differences = 3
680s add_na = TRUE
680s  num [1:10, 1:8] 67.1 80.1 45.1 8.1 39.1 66.1 27.1 71.1 47.1 46.1 ...
680s mode: double, lag = 1, differences = 1
680s mode: double, lag = 1, differences = 2
680s mode: double, lag = 1, differences = 3
680s mode: double, lag = 2, differences = 1
680s mode: double, lag = 2, differences = 2
680s mode: double, lag = 2, differences = 3
680s mode: double, lag = 3, differences = 1
680s mode: double, lag = 3, differences = 2
680s mode: double, lag = 3, differences = 3
680s mode: double, lag = 4, differences = 1
680s mode: double, lag = 4, differences = 2
680s mode: double, lag = 4, differences = 3
680s mode: double, lag = 1, differences = 1
680s mode: double, lag = 1, differences = 2
680s mode: double, lag = 1, differences = 3
680s mode: double, lag = 2, differences = 1
680s mode: double, lag = 2, differences = 2
680s mode: double, lag = 2, differences = 3
680s mode: double, lag = 3, differences = 1
680s mode: double, lag = 3, differences = 2
680s mode: double, lag = 3, differences = 3
680s mode: double, lag = 4, differences = 1
680s mode: double, lag = 4, differences = 2
680s mode: double, lag = 4, differences = 3
680s mode: double, lag = 1, differences = 1
681s mode: double, lag = 1, differences = 2
681s mode: double, lag = 1, differences = 3
681s mode: double, lag = 2, differences = 1
681s mode: double, lag = 2, differences = 2
681s mode: double, lag = 2, differences = 3
681s mode: double, lag = 3, differences = 1
681s mode: double, lag = 3, differences = 2
681s mode: double, lag = 3, differences = 3
681s mode: double, lag = 4, differences = 1
681s mode: double, lag = 4, differences = 2
681s mode: double, lag = 4, differences = 3
681s mode: double, lag = 1, differences = 1
681s mode: double, lag = 1, differences = 2
681s mode: double, lag = 1, differences = 3
681s mode: double, lag = 2, differences = 1
681s mode: double, lag = 2, differences = 2
681s mode: double, lag = 2, differences = 3
681s mode: double, lag = 3, differences = 1
681s mode: double, lag = 3, differences = 2
681s mode: double, lag = 3, differences = 3
681s mode: double, lag = 4, differences = 1
681s mode: double, lag = 4, differences = 2
681s mode: double, lag = 4, differences = 3
681s > 
681s > 
681s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
681s > # All NAs
681s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
681s > for (mode in c("integer", "double")) {
681s +   cat("mode: ", mode, "\n", sep = "")
681s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
681s +   storage.mode(x) <- mode
681s +   str(x)
681s +   
681s +   dimnames <- list(letters[1:10], LETTERS[1:5])
681s +   
681s +   # Test with and without dimnames on x
681s +   for (setDimnames in c(TRUE, FALSE)) {
681s +     if (setDimnames) dimnames(x) <- dimnames
681s +     else dimnames(x) <- NULL
681s +     # Check dimnames attribute
681s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
681s +       r0 <- rowDiffs_R(x, useNames = useNames)
681s +       r1 <- rowDiffs(x, useNames = useNames)
681s +       r2 <- t(colDiffs(t(x), useNames = useNames))
681s +       stopifnot(all.equal(r1, r0))
681s +       stopifnot(all.equal(r2, r0))
681s +       stopifnot(all.equal(r1, r2))
681s +     } # for (useNames ...)
681s +   } # for (setDimnames ...)
681s + } # for (mode ...)
681s mode: integer
681s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
681s mode: double
681s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
681s > 
681s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
681s > # A 1x1 matrix
681s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
681s > x <- matrix(0, nrow = 1L, ncol = 1L)
681s > dimnames <- list("a", "A")
681s > # Test with and without dimnames on x
681s > for (setDimnames in c(TRUE, FALSE)) {
681s +   if (setDimnames) dimnames(x) <- dimnames
681s +   else dimnames(x) <- NULL
681s +   # Check dimnames attribute
681s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
681s +     r0 <- rowDiffs_R(x, useNames = useNames)
681s +     r1 <- rowDiffs(x, useNames = useNames)
681s +     r2 <- t(colDiffs(t(x), useNames = useNames))
681s +     stopifnot(all.equal(r1, r0))
681s +     stopifnot(all.equal(r2, r0))
681s +     stopifnot(all.equal(r1, r2))
681s +   } # for (useNames ...)
681s + } # for (setDimnames ...)
681s > 
681s 
681s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
681s Copyright (C) 2024 The R Foundation for Statistical Computing
681s Platform: arm-unknown-linux-gnueabihf (32-bit)
681s 
681s R is free software and comes with ABSOLUTELY NO WARRANTY.
681s You are welcome to redistribute it under certain conditions.
681s Type 'license()' or 'licence()' for distribution details.
681s 
681s R is a collaborative project with many contributors.
681s Type 'contributors()' for more information and
681s 'citation()' on how to cite R or R packages in publications.
681s 
681s Type 'demo()' for some demos, 'help()' for on-line help, or
681s 'help.start()' for an HTML browser interface to help.
681s Type 'q()' to quit R.
681s 
681s > library("matrixStats")
681s > 
681s > rowDiffs_R <- function(x, lag = 1L, differences = 1L, ..., useNames = NA) {
681s +   ncol2 <- ncol(x) - lag * differences
681s +   if (ncol2 <= 0) {
681s +     y <- matrix(x[integer(0L)], nrow = nrow(x), ncol = 0L)
681s +     # Preserve names attribute
681s +     if (isTRUE(useNames) && !is.null(rownames(x))) rownames(y) <- rownames(x)
681s +     return(y)
681s +   }
681s +   suppressWarnings({
681s +     y <- apply(x, MARGIN = 1L, FUN = diff, lag = lag, differences = differences)
681s +   })
681s +   y <- t(y)
681s +   
681s +   # Preserve dimnames attribute
681s +   dim(y) <- c(nrow(x), ncol2)
681s +   if (isTRUE(useNames) && !is.null(dimnames(x))) {
681s +     colnames <- colnames(x)
681s +     if (!is.null(colnames)) {
681s +       len <- length(colnames)
681s +       colnames <- colnames[(len - ncol2 + 1):len]
681s +     }
681s +     dimnames(y) <- list(rownames(x), colnames)      
681s +   }
681s +   else dimnames(y) <- NULL
681s +   
681s +   y
681s + }
681s > 
681s > 
681s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
681s > # Subsetted tests
681s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
681s > source("utils/validateIndicesFramework.R")
681s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
681s > storage.mode(x) <- "integer"
681s > 
681s > # To check dimnames attribute
681s > dimnames <- list(letters[1:6], LETTERS[1:6])
681s > 
681s > # Test with and without dimnames on x
681s > for (setDimnames in c(TRUE, FALSE)) {
681s +   if (setDimnames) dimnames(x) <- dimnames
681s +   else dimnames(x) <- NULL
681s + 
681s +   count <- 0L
681s +   for (rows in index_cases) {
681s +     for (cols in index_cases) {
681s +       count <- count + 1L
681s +       for (lag in 1:2) {
681s +         for (differences in 1:3) {
681s +           # Check dimnames attribute
681s +           useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
681s +           useNames <- useNames[count %% length(useNames) + 1]
681s +           validateIndicesTestMatrix(x, rows, cols,
681s +                                     ftest = rowDiffs, fsure = rowDiffs_R,
681s +                                     lag = lag, differences = differences, useNames = useNames)
681s +           validateIndicesTestMatrix(x, rows, cols,
681s +                                     ftest = function(x, rows, cols, ..., useNames) {
681s +             t(colDiffs(t(x), rows = cols, cols = rows, ..., useNames = useNames))
681s +                                     }, fsure = rowDiffs_R,
681s +                                     lag = lag, differences = differences, useNames = useNames)
681s +         }
681s +       }
681s +     }
681s +   }
681s + }
689s > 
689s 
689s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
689s Copyright (C) 2024 The R Foundation for Statistical Computing
689s Platform: arm-unknown-linux-gnueabihf (32-bit)
689s 
689s R is free software and comes with ABSOLUTELY NO WARRANTY.
689s You are welcome to redistribute it under certain conditions.
689s Type 'license()' or 'licence()' for distribution details.
689s 
689s R is a collaborative project with many contributors.
689s Type 'contributors()' for more information and
689s 'citation()' on how to cite R or R packages in publications.
689s 
689s Type 'demo()' for some demos, 'help()' for on-line help, or
689s 'help.start()' for an HTML browser interface to help.
689s Type 'q()' to quit R.
689s 
690s > library("matrixStats")
690s > 
690s > rowIQRs_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
690s +   quantile_na <- function(x, ..., na.rm = FALSE) {
690s +     if (!na.rm && anyMissing(x))
690s +       return(c(NA_real_, NA_real_))
690s +     quantile(x, ..., na.rm = na.rm)
690s +   }
690s +   q <- apply(x, MARGIN = 1L, FUN = quantile_na,
690s +              probs = c(0.25, 0.75), na.rm = na.rm)
690s +   rownames(q) <- NULL # Not needed anymore
690s +   
690s +   # Preserve names attribute
690s +   dim(q) <- c(2L, nrow(x))
690s +   colnames(q) <- if (isTRUE(useNames)) rownames(x) else NULL
690s +   
690s +   q[2L, , drop = TRUE] - q[1L, , drop = TRUE]
690s + }
690s > 
690s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
690s > # Test with multiple quantiles
690s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
690s > for (mode in c("integer", "double")) {
690s +   cat("mode: ", mode, "\n", sep = "")
690s +   x <- matrix(1:100 + 0.1, nrow = 10, ncol = 10)
690s +   storage.mode(x) <- mode
690s +   str(x)
690s +   
690s +   # To check names attribute
690s +   dimnames <- list(letters[1:10], LETTERS[1:10])
690s + 
690s +   for (add_na in c(FALSE, TRUE)) {
690s +     if (add_na) {
690s +       x[3:5, 6:9] <- NA
690s +     }
690s +     # Test with and without dimnames on x
690s +     for (setDimnames in c(TRUE, FALSE)) {
690s +       if (setDimnames) dimnames(x) <- dimnames
690s +       else dimnames(x) <- NULL
690s +       for (na.rm in c(FALSE, TRUE)) {
690s +         # Check names attribute
690s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
690s +           probs <- c(0, 0.5, 1)
690s +           q0 <- rowIQRs_R(x, na.rm = na.rm, useNames = useNames)
690s +           print(q0)
690s +           q1 <- rowIQRs(x, na.rm = na.rm, useNames = useNames)
690s +           print(q1)
690s +           stopifnot(all.equal(q1, q0))
690s +           q2 <- colIQRs(t(x), na.rm = na.rm, useNames = useNames)
690s +           stopifnot(all.equal(q2, q0))
690s +           
690s +           q <- iqr(x[3, ], na.rm = na.rm)
690s +           print(q)
690s +         } # for (useNames ...)
690s +       } # for (na.rm ...)
690s +     } # for (setDimnames ...)
690s +   } # for (add_na ...)
690s + } # for (mode ...)
690s mode: integer
690s  int [1:10, 1:10] 1 2 3 4 5 6 7 8 9 10 ...
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 NA NA NA 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 NA NA NA 45 45 45 45 45 
690s [1] NA
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s [1] NA
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 25 25 25 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 25 25 25 45 45 45 45 45 
690s [1] 25
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s [1] 25
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s [1] NA
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s [1] NA
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s [1] 25
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s [1] 25
690s mode: double
690s  num [1:10, 1:10] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 45 45 45 45 45 45 45 45 
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s  [1] 45 45 45 45 45 45 45 45 45 45
690s [1] 45
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 NA NA NA 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 NA NA NA 45 45 45 45 45 
690s [1] NA
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s [1] NA
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 25 25 25 45 45 45 45 45 
690s  a  b  c  d  e  f  g  h  i  j 
690s 45 45 25 25 25 45 45 45 45 45 
690s [1] 25
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s [1] 25
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s [1] NA
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s  [1] 45 45 NA NA NA 45 45 45 45 45
690s [1] NA
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s [1] 25
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s  [1] 45 45 25 25 25 45 45 45 45 45
690s [1] 25
690s > 
690s > 
690s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
690s > # Test corner cases
690s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
690s > for (mode in c("integer", "double")) {
690s +   cat("mode: ", mode, "\n", sep = "")
690s +   # Empty vectors
690s +   x <- integer(0L)
690s +   storage.mode(x) <- mode
690s +   str(x)
690s +   q <- iqr(x)
690s +   print(q)
690s +   stopifnot(identical(q, NA_real_))
690s + 
690s +   # Scalar
690s +   x <- 1L
690s +   storage.mode(x) <- mode
690s +   str(x)
690s +   q <- iqr(x)
690s +   str(q)
690s +   stopifnot(identical(q, 0))
690s + }
690s mode: integer
690s  int(0) 
690s [1] NA
690s  int 1
690s  num 0
690s mode: double
690s  num(0) 
690s [1] NA
690s  num 1
690s  num 0
690s > 
690s > 
690s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
690s > # Single row matrices
690s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
690s > x <- matrix(1, nrow = 1L, ncol = 2L)
690s > dimnames <- list("a",  LETTERS[1:2])
690s > # Test with and without dimnames on x
690s > for (setDimnames in c(TRUE, FALSE)) {
690s +   if (setDimnames) dimnames(x) <- dimnames
690s +   else dimnames(x) <- NULL
690s +   # Check names attribute
690s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
690s +     q0 <- rowIQRs_R(x, useNames = useNames)
690s +     q1 <- rowIQRs(x, useNames = useNames)
690s +     q2 <- colIQRs(t(x), useNames = useNames)
690s +     stopifnot(all.equal(q0, q1))
690s +     stopifnot(all.equal(q0, q2))
690s +   }
690s + }
690s > 
690s > x <- matrix(1, nrow = 2L, ncol = 1L)
690s > q <- colIQRs(x)
690s > stopifnot(identical(q, 0))
690s > 
690s 
690s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
690s Copyright (C) 2024 The R Foundation for Statistical Computing
690s Platform: arm-unknown-linux-gnueabihf (32-bit)
690s 
690s R is free software and comes with ABSOLUTELY NO WARRANTY.
690s You are welcome to redistribute it under certain conditions.
690s Type 'license()' or 'licence()' for distribution details.
690s 
690s R is a collaborative project with many contributors.
690s Type 'contributors()' for more information and
690s 'citation()' on how to cite R or R packages in publications.
690s 
690s Type 'demo()' for some demos, 'help()' for on-line help, or
690s 'help.start()' for an HTML browser interface to help.
690s Type 'q()' to quit R.
690s 
691s > library("matrixStats")
691s > 
691s > rowIQRs_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
691s +   quantile_na <- function(x, ..., na.rm = FALSE) {
691s +     if (!na.rm && anyMissing(x))
691s +       return(c(NA_real_, NA_real_))
691s +     quantile(x, ..., na.rm = na.rm)
691s +   }
691s +   q <- apply(x, MARGIN = 1L, FUN = quantile_na,
691s +              probs = c(0.25, 0.75), na.rm = na.rm)
691s +   rownames(q) <- NULL # Not needed anymore
691s +   
691s +   # Preserve names attribute
691s +   dim(q) <- c(2L, nrow(x))
691s +   colnames(q) <- if (isTRUE(useNames)) rownames(x) else NULL
691s +   
691s +   q[2L, , drop = TRUE] - q[1L, , drop = TRUE]
691s + }
691s > 
691s > 
691s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
691s > # Subsetted tests
691s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
691s > source("utils/validateIndicesFramework.R")
691s > x <- runif(6, min = -6, max = 6)
691s > for (idxs in index_cases) {
691s +   for (na.rm in c(TRUE, FALSE)) {
691s +     validateIndicesTestVector(x, idxs, ftest = iqr, fsure = function(x, na.rm) {
691s +       dim(x) <- c(1L, length(x))
691s +       rowIQRs_R(x, na.rm = na.rm)
691s +     }, na.rm = na.rm)
691s +   }
691s + }
691s > 
691s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
691s > 
691s > # To check names attribute
691s > dimnames <- list(letters[1:6], LETTERS[1:6])
691s > 
691s > # Test with and without dimnames on x
691s > for (setDimnames in c(TRUE, FALSE)) {
691s +   if (setDimnames) dimnames(x) <- dimnames
691s +   else dimnames(x) <- NULL
691s +   
691s +   count <- 0L
691s +   for (rows in index_cases) {
691s +     for (cols in index_cases) {
691s +       count <- count + 1L
691s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
691s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
691s +       useNames <- useNames[count %% length(useNames) + 1]
691s +       
691s +       validateIndicesTestMatrix(x, rows, cols,
691s +                                 ftest = rowIQRs, fsure = rowIQRs_R,
691s +                                 na.rm = na.rm, useNames = useNames)
691s +       validateIndicesTestMatrix(x, rows, cols,
691s +                                 fcoltest = colIQRs, fsure = rowIQRs_R,
691s +                                 na.rm = na.rm, useNames = useNames)
691s +     }
691s +   }
691s + }
694s > 
694s 
694s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
694s Copyright (C) 2024 The R Foundation for Statistical Computing
694s Platform: arm-unknown-linux-gnueabihf (32-bit)
694s 
694s R is free software and comes with ABSOLUTELY NO WARRANTY.
694s You are welcome to redistribute it under certain conditions.
694s Type 'license()' or 'licence()' for distribution details.
694s 
694s R is a collaborative project with many contributors.
694s Type 'contributors()' for more information and
694s 'citation()' on how to cite R or R packages in publications.
694s 
694s Type 'demo()' for some demos, 'help()' for on-line help, or
694s 'help.start()' for an HTML browser interface to help.
694s Type 'q()' to quit R.
694s 
694s > # Test inspired by the harmonic mean example in R-help
694s > # thread '[R] Beyond double-precision?' on May 9, 2009.
694s > 
694s > library("matrixStats")
694s > library("stats")
694s > 
694s > logSumExp0 <- function(lx) {
694s +   idx_max <- which.max(lx)
694s +   log1p(sum(exp(lx[-idx_max] - lx[idx_max]))) + lx[idx_max]
694s + }
694s > 
694s > n <- 200L
694s > set.seed(1)
694s > 
694s > for (mode in c("integer", "double")) {
694s +   cat("mode: ", mode, "\n", sep = "")
694s +   x <- matrix(runif(n, min = 1.0, max = 3.0), nrow = 20L)
694s +   storage.mode(x) <- mode
694s +   str(x)
694s + 
694s +   # The logarithm of the harmonic mean by rows
694s +   y_h <- log(1 / rowMeans(1 / x))
694s +   str(y_h)
694s + 
694s +   lx_neg <- -log(x)
694s + 
694s +   y0 <- log(ncol(x)) - apply(lx_neg, MARGIN = 1L, FUN = logSumExp0)
694s +   stopifnot(all.equal(y0, y_h))
694s + 
694s +   y1 <- log(ncol(x)) - apply(lx_neg, MARGIN = 1L, FUN = logSumExp)
694s +   stopifnot(all.equal(y1, y0))
694s + 
694s +   y2 <- log(ncol(x)) - rowLogSumExps(lx_neg)
694s +   stopifnot(all.equal(y2, y0))
694s + 
694s +   y3 <- log(ncol(x)) - colLogSumExps(t(lx_neg))
694s +   stopifnot(all.equal(y3, y0))
694s + 
694s + 
694s +   # The logarithm of the harmonic mean by columns
694s +   y_h <- log(1 / colMeans(1 / x))
694s +   str(y_h)
694s + 
694s +   y0 <- log(nrow(x)) - apply(lx_neg, MARGIN = 2L, FUN = logSumExp0)
694s +   stopifnot(all.equal(y0, y_h))
694s + 
694s +   y1 <- log(nrow(x)) - apply(lx_neg, MARGIN = 2L, FUN = logSumExp)
694s +   stopifnot(all.equal(y1, y0))
694s + 
694s +   y2 <- log(nrow(x)) - colLogSumExps(lx_neg)
694s +   stopifnot(all.equal(y2, y0))
694s + 
694s +   y3 <- log(nrow(x)) - rowLogSumExps(t(lx_neg))
694s +   stopifnot(all.equal(y3, y0))
694s + 
694s +   # Testing names
694s +   rownames(lx_neg) <- seq_len(nrow(x))
694s +   colnames(lx_neg) <- seq_len(ncol(x))
694s +   y2 <- rowLogSumExps(lx_neg, useNames = TRUE)
694s +   stopifnot(identical(names(y2), rownames(lx_neg)))
694s +   y3 <- colLogSumExps(t(lx_neg), useNames = TRUE)
694s +   stopifnot(identical(names(y3), rownames(lx_neg)))
694s + } # for (mode ...)
695s mode: integer
695s  int [1:20, 1:10] 1 1 2 2 1 2 2 2 2 1 ...
695s  num [1:20] 0.357 0.223 0.223 0.288 0.511 ...
695s  num [1:10] 0.322 0.223 0.322 0.255 0.255 ...
695s mode: double
695s  num [1:20, 1:10] 1.54 1.44 2.03 1.54 1.36 ...
695s  num [1:20] 0.526 0.466 0.734 0.638 0.604 ...
695s  num [1:10] 0.627 0.582 0.617 0.474 0.418 ...
695s > 
695s > 
695s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
695s > # Corner cases
695s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
695s > ## Zero-size matrices
695s > lx <- matrix(numeric(0L), nrow = 0L, ncol = 0L)
695s > y <- rowLogSumExps(lx)
695s > print(y)
695s numeric(0)
695s > stopifnot(length(y) == nrow(lx))
695s > 
695s > y <- colLogSumExps(lx)
695s > print(y)
695s numeric(0)
695s > stopifnot(length(y) == ncol(lx))
695s > 
695s > ## Zero-height matrices
695s > lx <- matrix(numeric(0L), nrow = 0L, ncol = 5L)
695s > y <- rowLogSumExps(lx)
695s > print(y)
695s numeric(0)
695s > stopifnot(length(y) == nrow(lx))
695s > 
695s > y <- colLogSumExps(lx)
695s > print(y)
695s [1] -Inf -Inf -Inf -Inf -Inf
695s > stopifnot(length(y) == ncol(lx))
695s > stopifnot(all(y == -Inf))
695s > 
695s > ## Zero-width matrices
695s > lx <- matrix(numeric(0L), nrow = 5L, ncol = 0L)
695s > y <- colLogSumExps(lx)
695s > print(y)
695s numeric(0)
695s > stopifnot(length(y) == ncol(lx))
695s > 
695s > y <- rowLogSumExps(lx)
695s > print(y)
695s [1] -Inf -Inf -Inf -Inf -Inf
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(all(y == -Inf))
695s > 
695s > 
695s > ## Matrices with one element
695s > lx <- matrix(1.0, nrow = 1L, ncol = 1L)
695s > y <- rowLogSumExps(lx)
695s > print(y)
695s [1] 1
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(all(y == lx))
695s > 
695s > y <- colLogSumExps(lx)
695s > print(y)
695s [1] 1
695s > stopifnot(length(y) == ncol(lx))
695s > stopifnot(all(y == lx))
695s > 
695s > ## All missing values
695s > lx <- matrix(NA_real_, nrow = 1L, ncol = 1L)
695s > y <- rowLogSumExps(lx, na.rm = TRUE)
695s > print(y)
695s [1] -Inf
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(identical(y, -Inf))
695s > 
695s > lx <- matrix(NA_real_, nrow = 1L, ncol = 1L)
695s > y <- colLogSumExps(lx, na.rm = TRUE)
695s > print(y)
695s [1] -Inf
695s > stopifnot(length(y) == ncol(lx))
695s > stopifnot(identical(y, -Inf))
695s > 
695s > lx <- matrix(NA_real_, nrow = 2L, ncol = 2L)
695s > y <- rowLogSumExps(lx, na.rm = TRUE)
695s > print(y)
695s [1] -Inf -Inf
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(all(y == -Inf))
695s > 
695s > y <- rowLogSumExps(lx, na.rm = FALSE)
695s > print(y)
695s [1] NA NA
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(all(is.na(y) & !is.nan(y)))
695s > 
695s > lx <- matrix(NA_real_, nrow = 2L, ncol = 2L)
695s > y <- colLogSumExps(lx, na.rm = TRUE)
695s > print(y)
695s [1] -Inf -Inf
695s > stopifnot(length(y) == ncol(lx))
695s > stopifnot(all(y == -Inf))
695s > 
695s > y <- colLogSumExps(lx, na.rm = FALSE)
695s > print(y)
695s [1] NA NA
695s > stopifnot(length(y) == ncol(lx))
695s > stopifnot(all(is.na(y) & !is.nan(y)))
695s > 
695s > ## +Inf values
695s > lx <- matrix(c(1, 2, +Inf), nrow = 3L, ncol = 2L)
695s > y <- colLogSumExps(lx, na.rm = TRUE)
695s > print(y)
695s [1] Inf Inf
695s > stopifnot(length(y) == ncol(lx))
695s > stopifnot(all(y == +Inf))
695s > 
695s > ## multiple -Inf values
695s > lx <- matrix(c(-Inf, -Inf), nrow = 2L, ncol = 3L)
695s > y <- rowLogSumExps(lx)
695s > print(y)
695s [1] -Inf -Inf
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(all(y == -Inf))
695s > 
695s > lx <- matrix(c(-Inf, 5, -Inf), nrow = 2L, ncol = 3L, byrow = TRUE)
695s > y <- rowLogSumExps(lx)
695s > print(y)
695s [1] 5 5
695s > stopifnot(length(y) == nrow(lx))
695s > stopifnot(all(y == 5))
695s > 
695s > ## Bug report #104 (https://github.com/HenrikBengtsson/matrixStats/issues/104)
695s > ## (This would core dump on Windows)
695s > x <- matrix(0.0, nrow = 2L, ncol = 32762L)
695s > y <- colLogSumExps(x)
695s > str(y)
695s  num [1:32762] 0.693 0.693 0.693 0.693 0.693 ...
695s > 
695s > ## Bug report #120 (https://github.com/HenrikBengtsson/matrixStats/issues/120)
695s > ## (This would error if x had rownames/colnames and non-NULL rows/cols were
695s > ## used)
695s > x <- matrix(runif(6), nrow = 2L, ncol = 3L,
695s +             dimnames = list(c("A", "B"), c("a", "b", "c")))
695s > y <- colLogSumExps(x, cols = 3:1, useNames = TRUE)
695s > stopifnot(names(y) == c("c", "b", "a"))
695s > y <- rowLogSumExps(x, rows = 2, useNames = TRUE)
695s > stopifnot(names(y) == "B")
695s > 
695s > 
695s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
695s > # Check names attributes
695s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
695s > 
695s > ## Create isFALSE() if running on an old version of R
695s > if (!exists("isFALSE", mode="function")) {
695s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
695s + }
695s > 
695s > rowLogSumExps_R <- function(x, ..., useNames = NA) {
695s +   res <- apply(x, MARGIN = 1L, FUN = function(rx, ...) {
695s +     log(sum(exp(rx), ...))
695s +   }, ...)
695s +   if (isFALSE(useNames)) names(res) <- NULL
695s +   res
695s + }
695s > 
695s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6L, ncol = 6L)
695s > 
695s > # To check names attribute
695s > dimnames <- list(letters[1:6], LETTERS[1:6])
695s > 
695s > # Test with and without dimnames on x
695s > for (setDimnames in c(TRUE, FALSE)) {
695s +   if (setDimnames) dimnames(x) <- dimnames
695s +   else dimnames(x) <- NULL
695s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
695s +     y0 <- rowLogSumExps_R(x, useNames = useNames)
695s +     y1 <- rowLogSumExps(x, useNames = useNames)
695s +     y2 <- colLogSumExps(t(x), useNames = useNames)
695s +     stopifnot(all.equal(y1, y0))
695s +     stopifnot(all.equal(y2, y0))
695s +   }
695s + }
695s > 
695s 
695s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
695s Copyright (C) 2024 The R Foundation for Statistical Computing
695s Platform: arm-unknown-linux-gnueabihf (32-bit)
695s 
695s R is free software and comes with ABSOLUTELY NO WARRANTY.
695s You are welcome to redistribute it under certain conditions.
695s Type 'license()' or 'licence()' for distribution details.
695s 
695s R is a collaborative project with many contributors.
695s Type 'contributors()' for more information and
695s 'citation()' on how to cite R or R packages in publications.
695s 
695s Type 'demo()' for some demos, 'help()' for on-line help, or
695s 'help.start()' for an HTML browser interface to help.
695s Type 'q()' to quit R.
695s 
695s > library("matrixStats")
695s > 
695s > ## Create isFALSE() if running on an old version of R
695s > if (!exists("isFALSE", mode="function")) {
695s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
695s + }
695s > 
695s > rowLogSumExps_R <- function(x, ..., useNames = NA) {
695s +   res <- apply(x, MARGIN = 1L, FUN = function(rx, ...) {
695s +     log(sum(exp(rx), ...))
695s +   }, ...)
695s +   if (isFALSE(useNames)) names(res) <- NULL
695s +   res
695s + }
695s > 
695s > 
695s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
695s > # Subsetted tests
695s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
695s > source("utils/validateIndicesFramework.R")
695s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
695s > 
695s > # To check names attribute
695s > dimnames <- list(letters[1:6], LETTERS[1:6])
695s > 
695s > # Test with and without dimnames on x
695s > for (setDimnames in c(TRUE, FALSE)) {
695s +   if (setDimnames) dimnames(x) <- dimnames
695s +   else dimnames(x) <- NULL
695s +   for (rows in index_cases) {
695s +     for (cols in index_cases) {
695s +       for (na.rm in c(TRUE, FALSE)) {
695s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
695s +           validateIndicesTestMatrix(x, rows, cols,
695s +                                     ftest = rowLogSumExps,
695s +                                     fsure = rowLogSumExps_R,
695s +                                     na.rm = na.rm, useNames = useNames)
695s +           validateIndicesTestMatrix(x, rows, cols,
695s +                                     fcoltest = colLogSumExps,
695s +                                     fsure = rowLogSumExps_R,
695s +                                     na.rm = na.rm, useNames = useNames)
695s +         }
695s +       }
695s +     }
695s +   }
695s + }
698s > 
698s 
698s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
698s Copyright (C) 2024 The R Foundation for Statistical Computing
698s Platform: arm-unknown-linux-gnueabihf (32-bit)
698s 
698s R is free software and comes with ABSOLUTELY NO WARRANTY.
698s You are welcome to redistribute it under certain conditions.
698s Type 'license()' or 'licence()' for distribution details.
698s 
698s R is a collaborative project with many contributors.
698s Type 'contributors()' for more information and
698s 'citation()' on how to cite R or R packages in publications.
698s 
698s Type 'demo()' for some demos, 'help()' for on-line help, or
698s 'help.start()' for an HTML browser interface to help.
698s Type 'q()' to quit R.
698s 
698s > library("matrixStats")
698s > 
698s > ## Always allow testing of the 'center' argument (as long as it's not defunct)
698s > options(matrixStats.center.onUse = "ignore")
698s > 
698s > rowMads_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
698s +   suppressWarnings({
698s +     res <- apply(x, MARGIN = 1L, FUN = mad, na.rm = na.rm)
698s +   })
698s +   if (is.na(useNames) || !useNames) names(res) <- NULL
698s +   res
698s + }
698s > 
698s > colMads_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
698s +   suppressWarnings({
698s +     res <- apply(x, MARGIN = 2L, FUN = mad, na.rm = na.rm)
698s +   })
698s +   if (is.na(useNames) || !useNames) names(res) <- NULL
698s +   res
698s + }
698s > 
698s > rowMads_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
698s +   center <- rowMedians(x, cols = cols, na.rm = na.rm, useNames = FALSE)
698s +   rowMads(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
698s + }
698s > 
698s > colMads_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
698s +   center <- colMedians(x, rows = rows, na.rm = na.rm, useNames = FALSE)
698s +   colMads(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
698s + }
698s > 
698s > 
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > # A 3x3 matrix (no ties)
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > for (mode in c("integer", "double")) {
698s +   x <- matrix(c(1, 2, 3, 2, 3, 4, 3, 4, 5) + 0.1, nrow = 3, ncol = 3)
698s +   cat("mode: ", mode, "\n", sep = "")
698s +   storage.mode(x) <- mode
698s +   str(x)
698s +   
698s +   # To check name attribute
698s +   dimnames <- list(letters[1:3], LETTERS[1:3])
698s +   
698s +   # Test with and without dimnames on x
698s +   for (setDimnames in c(TRUE, FALSE)) {
698s +     if (setDimnames) dimnames(x) <- dimnames
698s +     else dimnames(x) <- NULL
698s +     tx <- t(x)
698s +     # Check names attribute
698s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
698s +       cat("rowMads():\n")
698s +       center <- rowMedians(x, na.rm = TRUE, useNames = useNames)
698s +       r0 <- rowMads_R(x, na.rm = TRUE, useNames = useNames)
698s +       r1 <- rowMads(x, na.rm = TRUE, useNames = useNames)
698s +       r1b <- rowMads_center(x, na.rm = TRUE, useNames = useNames)
698s +       r1c <- rowMads(x, center = center, na.rm = TRUE, useNames = useNames)
698s +       r2 <- colMads(tx, na.rm = TRUE, useNames = useNames)
698s +       r2b <- colMads_center(tx, na.rm = TRUE, useNames = useNames)
698s +       stopifnot(all.equal(r1, r2))
698s +       stopifnot(all.equal(r1, r0))
698s +       stopifnot(all.equal(r1b, r1))
698s +       stopifnot(all.equal(r1c, r1))
698s +       stopifnot(all.equal(r2, r0))
698s +       stopifnot(all.equal(r2b, r2))
698s +       
698s +       cat("colMads():\n")
698s +       center <- colMedians(x, na.rm = TRUE, useNames = useNames)
698s +       r0 <- colMads_R(x, na.rm = TRUE, useNames = useNames)
698s +       r1 <- colMads(x, na.rm = TRUE, useNames = useNames)
698s +       r1b <- colMads_center(x, na.rm = TRUE, useNames = useNames)
698s +       r1c <- colMads(x, center = center, na.rm = TRUE, useNames = useNames)
698s +       r2 <- rowMads(tx, na.rm = TRUE, useNames = useNames)
698s +       r2b <- rowMads_center(tx, na.rm = TRUE, useNames = useNames)
698s +       stopifnot(all.equal(r1, r2))
698s +       stopifnot(all.equal(r1, r0))
698s +       stopifnot(all.equal(r1b, r1))
698s +       stopifnot(all.equal(r1c, r1))
698s +       stopifnot(all.equal(r2, r0))
698s +       stopifnot(all.equal(r2b, r2))
698s +     }
698s +   }
698s + }
698s mode: integer
698s  int [1:3, 1:3] 1 2 3 2 3 4 3 4 5
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s mode: double
698s  num [1:3, 1:3] 1.1 2.1 3.1 2.1 3.1 4.1 3.1 4.1 5.1
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s > 
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > # Ties: a 4x4 matrix
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > for (mode in c("integer", "double")) {
698s +   x <- matrix(c(1:4, 2:5, 3:6, 4:7) + 0.1, nrow = 4, ncol = 4)
698s +   cat("mode: ", mode, "\n", sep = "")
698s +   storage.mode(x) <- mode
698s +   str(x)
698s +   tx <- t(x)
698s +   
698s +   # To check name attribute
698s +   dimnames <- list(letters[1:4], LETTERS[1:4])
698s +   
698s +   # Test with and without dimnames on x
698s +   for (setDimnames in c(TRUE, FALSE)) {
698s +     if (setDimnames) dimnames(x) <- dimnames
698s +     else dimnames(x) <- NULL
698s +     tx <- t(x)
698s +     # Check names attribute
698s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
698s +       cat("rowMads():\n")
698s +       r0 <- rowMads_R(x, na.rm = TRUE, useNames = useNames)
698s +       r1 <- rowMads(x, na.rm = TRUE, useNames = useNames)
698s +       r2 <- colMads(tx, na.rm = TRUE, useNames = useNames)
698s +       stopifnot(all.equal(r1, r2))
698s +       stopifnot(all.equal(r1, r0))
698s +       stopifnot(all.equal(r2, r0))
698s +       
698s +       cat("colMads():\n")
698s +       r0 <- colMads_R(x, na.rm = TRUE, useNames = useNames)
698s +       r1 <- colMads(x, na.rm = TRUE, useNames = useNames)
698s +       r2 <- rowMads(tx, na.rm = TRUE, useNames = useNames)
698s +       stopifnot(all.equal(r1, r2))
698s +       stopifnot(all.equal(r1, r0))
698s +       stopifnot(all.equal(r2, r0))
698s +     }
698s +   }
698s + }
698s mode: integer
698s  int [1:4, 1:4] 1 2 3 4 2 3 4 5 3 4 ...
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s mode: double
698s  num [1:4, 1:4] 1.1 2.1 3.1 4.1 2.1 3.1 4.1 5.1 3.1 4.1 ...
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s > tx <- NULL
698s > 
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > # No ties: a 3x3 matrix with an NA value
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > for (mode in c("integer", "double")) {
698s +   x <- matrix(c(1, 2, 3, 2, 3, 4, 3, 4, 5) + 0.1, nrow = 3, ncol = 3)
698s +   x[2, 2] <- NA_real_
698s + 
698s +   cat("mode: ", mode, "\n", sep = "")
698s +   storage.mode(x) <- mode
698s +   str(x)
698s +   tx <- t(x)
698s +   
698s +   # To check name attribute
698s +   dimnames <- list(letters[1:3], LETTERS[1:3])
698s +   
698s +   # Test with and without dimnames on x
698s +   for (setDimnames in c(TRUE, FALSE)) {
698s +     if (setDimnames) dimnames(x) <- dimnames
698s +     else dimnames(x) <- NULL
698s +     tx <- t(x)
698s +     # Check names attribute
698s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
698s +       cat("rowMads():\n")
698s +       r0 <- rowMads_R(x, na.rm = TRUE, useNames = useNames)
698s +       r1 <- rowMads(x, na.rm = TRUE, useNames = useNames)
698s +       r2 <- colMads(tx, na.rm = TRUE, useNames = useNames)
698s +       stopifnot(all.equal(r1, r2))
698s +       stopifnot(all.equal(r1, r0))
698s +       stopifnot(all.equal(r2, r0))
698s +       
698s +       cat("colMads():\n")
698s +       r0 <- colMads_R(x, na.rm = TRUE, useNames = useNames)
698s +       r1 <- colMads(x, na.rm = TRUE, useNames = useNames)
698s +       r2 <- rowMads(tx, na.rm = TRUE, useNames = useNames)
698s +       stopifnot(all.equal(r1, r2))
698s +       stopifnot(all.equal(r1, r0))
698s +       stopifnot(all.equal(r2, r0))
698s +     }
698s +   }
698s + }
698s mode: integer
698s  int [1:3, 1:3] 1 2 3 2 NA 4 3 4 5
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s mode: double
698s  num [1:3, 1:3] 1.1 2.1 3.1 2.1 NA 4.1 3.1 4.1 5.1
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s rowMads():
698s colMads():
698s > tx <- NULL
698s > 
698s > 
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > # With and without some NAs
698s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
698s > for (add_na in c(FALSE, TRUE)) {
698s +   cat("add_na = ", add_na, "\n", sep = "")
698s + 
698s +   x <- matrix(1:50, nrow = 10L, ncol = 5L)
698s +   if (add_na) {
698s +     x[3:7, c(2, 4)] <- NA_real_
698s +   }
698s +   
698s +   # To check name attribute
698s +   dimnames <- list(letters[1:10], LETTERS[1:5])
698s +   
698s +   # Test with and without dimnames on x
698s +   for (setDimnames in c(TRUE, FALSE)) {
698s +     if (setDimnames) dimnames(x) <- dimnames
698s +     else dimnames(x) <- NULL
698s +     tx <- t(x)
698s +     # Row/column ranges
698s +     for (na.rm in c(FALSE, TRUE)) {
698s +       # Check names attribute
698s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
698s +       cat("na.rm = ", na.rm, "\n", sep = "")
698s +         cat("rowMads():\n")
698s +         center <- rowMedians(x, na.rm = na.rm, useNames = useNames)
698s +         r0 <- rowMads_R(x, na.rm = na.rm, useNames = useNames)
698s +         r1 <- rowMads(x, na.rm = na.rm, useNames = useNames)
698s +         r2 <- rowMads(x, center = center, na.rm = na.rm, useNames = useNames)
698s +         r3 <- colMads(tx, na.rm = na.rm, useNames = useNames)
698s +         stopifnot(all.equal(r1, r0))
698s +         stopifnot(all.equal(r2, r0))
698s +         stopifnot(all.equal(r2, r1))
698s +         stopifnot(all.equal(r3, r0))
698s +         stopifnot(all.equal(r3, r1))
698s +         stopifnot(all.equal(r3, r2))
698s +         
698s +         cat("colMads():\n")
698s +         center <- colMedians(x, na.rm = na.rm, useNames = useNames)
698s +         r0 <- colMads_R(x, na.rm = na.rm, useNames = useNames)
698s +         r1 <- colMads(x, na.rm = na.rm, useNames = useNames)
698s +         r2 <- colMads(x, center = center, na.rm = na.rm, useNames = useNames)
698s +         r3 <- rowMads(tx, na.rm = na.rm, useNames = useNames)
698s +         stopifnot(all.equal(r1, r0))
698s +         stopifnot(all.equal(r2, r0))
698s +         stopifnot(all.equal(r2, r1))
698s +         stopifnot(all.equal(r3, r0))
698s +         stopifnot(all.equal(r3, r1))
698s +         stopifnot(all.equal(r3, r2))
698s +       }
698s +     }
698s +   }
698s +   tx <- NULL
698s + } # for (add_na ...)
699s add_na = FALSE
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s add_na = TRUE
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = FALSE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s na.rm = TRUE
699s rowMads():
699s colMads():
699s > 
699s > 
699s > 
699s > 
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > # All NAs
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
699s > # Test with and without dimnames on x
699s > for (setDimnames in c(TRUE, FALSE)) {
699s +   if (setDimnames) dimnames(x) <- dimnames
699s +   else dimnames(x) <- NULL
699s +   tx <- t(x)
699s +   # Row/column ranges
699s +   for (na.rm in c(FALSE, TRUE)) {
699s +     # Check names attribute
699s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
699s +       cat("na.rm = ", na.rm, "\n", sep = "")
699s +       r0 <- rowMads_R(x, na.rm = na.rm, useNames = useNames)
699s +       if (na.rm) r0[is.na(r0)] <- NaN
699s +       r1 <- rowMads(x, na.rm = na.rm, useNames = useNames)
699s +       r2 <- colMads(tx, na.rm = na.rm, useNames = useNames)
699s +       stopifnot(all.equal(r1, r0))
699s +       stopifnot(all.equal(r2, r0))
699s +       stopifnot(all.equal(r1, r2))
699s +     }
699s +   }
699s + }
699s na.rm = FALSE
699s na.rm = FALSE
699s na.rm = TRUE
699s na.rm = TRUE
699s na.rm = FALSE
699s na.rm = FALSE
699s na.rm = TRUE
699s na.rm = TRUE
699s > tx <- NULL
699s > 
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > # A 1x1 matrix
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > x <- matrix(0, nrow = 1L, ncol = 1L)
699s > dimnames <- list("a", "A")
699s > # Test with and without dimnames on x
699s > for (setDimnames in c(TRUE, FALSE)) {
699s +   if (setDimnames) dimnames(x) <- dimnames
699s +   else dimnames(x) <- NULL
699s +   tx <- t(x)
699s +   # Row/column ranges
699s +   for (na.rm in c(FALSE, TRUE)) {
699s +     # Check names attribute
699s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
699s +       cat("na.rm = ", na.rm, "\n", sep = "")
699s +       r0 <- rowMads_R(x, na.rm = na.rm, useNames = useNames)
699s +       r1 <- rowMads(x, na.rm = na.rm, useNames = useNames)
699s +       r2 <- colMads(tx, na.rm = na.rm, useNames = useNames)
699s +       stopifnot(all.equal(r1, r0))
699s +       stopifnot(all.equal(r2, r0))
699s +       stopifnot(all.equal(r1, r2))
699s +     }
699s +   }
699s + }
699s na.rm = FALSE
699s na.rm = FALSE
699s na.rm = TRUE
699s na.rm = TRUE
699s na.rm = FALSE
699s na.rm = FALSE
699s na.rm = TRUE
699s na.rm = TRUE
699s > 
699s > 
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > # A 0x0 matrix
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > x <- matrix(double(0), nrow = 0, ncol = 0)
699s > tx <- t(x)
699s > for (na.rm in c(FALSE, TRUE)) {
699s +   cat("na.rm = ", na.rm, "\n", sep = "")
699s +   r0 <- rowMads_R(x, na.rm = na.rm)
699s +   r1 <- rowMads(x, na.rm = na.rm)
699s +   r2 <- colMads(tx, na.rm = na.rm)
699s +   stopifnot(all.equal(r1, r2))
699s +   stopifnot(all.equal(r1, r0))
699s +   stopifnot(all.equal(r2, r0))
699s + }
699s na.rm = FALSE
699s na.rm = TRUE
699s > 
699s 
699s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
699s Copyright (C) 2024 The R Foundation for Statistical Computing
699s Platform: arm-unknown-linux-gnueabihf (32-bit)
699s 
699s R is free software and comes with ABSOLUTELY NO WARRANTY.
699s You are welcome to redistribute it under certain conditions.
699s Type 'license()' or 'licence()' for distribution details.
699s 
699s R is a collaborative project with many contributors.
699s Type 'contributors()' for more information and
699s 'citation()' on how to cite R or R packages in publications.
699s 
699s Type 'demo()' for some demos, 'help()' for on-line help, or
699s 'help.start()' for an HTML browser interface to help.
699s Type 'q()' to quit R.
699s 
699s > library("matrixStats")
699s > 
699s > ## Always allow testing of the 'center' argument (as long as it's not defunct)
699s > options(matrixStats.center.onUse = "ignore")
699s > 
699s > rowMads_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
699s +   suppressWarnings({
699s +     res <- apply(x, MARGIN = 1L, FUN = mad, na.rm = na.rm)
699s +   })
699s +   if (is.na(useNames) || !useNames) names(res) <- NULL
699s +   res
699s + }
699s > 
699s > colMads_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
699s +   suppressWarnings({
699s +     res <- apply(x, MARGIN = 2L, FUN = mad, na.rm = na.rm)
699s +   })
699s +   if (is.na(useNames) || !useNames) names(res) <- NULL
699s +   res
699s + }
699s > 
699s > rowMads_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
699s +   center <- rowMedians(x, cols = cols, na.rm = na.rm, useNames = FALSE)
699s +   rowMads(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
699s + }
699s > 
699s > colMads_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
699s +   center <- colMedians(x, rows = rows, na.rm = na.rm, useNames = FALSE)
699s +   colMads(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
699s + }
699s > 
699s > 
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > # Subsetted tests
699s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
699s > source("utils/validateIndicesFramework.R")
699s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
699s > storage.mode(x) <- "integer"
699s > 
699s > # To check names attribute
699s > dimnames <- list(letters[1:6], LETTERS[1:6])
699s > 
699s > # Test with and without dimnames on x
699s > for (setDimnames in c(TRUE, FALSE)) {
699s +   if (setDimnames) dimnames(x) <- dimnames
699s +   else dimnames(x) <- NULL
699s + 
699s +   count <- 0L
699s +   for (rows in index_cases) {
699s +     for (cols in index_cases) {
699s +       count <- count + 1L
699s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
699s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
699s +       useNames <- useNames[count %% length(useNames) + 1]
699s +       
699s +       validateIndicesTestMatrix(x, rows, cols,
699s +                                 ftest = rowMads, fsure = rowMads_R,
699s +                                 na.rm = na.rm, useNames = useNames)
699s +       validateIndicesTestMatrix(x, rows, cols,
699s +                                 ftest = rowMads_center, fsure = rowMads_R,
699s +                                 na.rm = na.rm, useNames = useNames)
699s + 
699s +       validateIndicesTestMatrix(x, rows, cols,
699s +                                 fcoltest = colMads, fsure = rowMads_R,
699s +                                 na.rm = na.rm, useNames = useNames)
699s +       validateIndicesTestMatrix(x, rows, cols,
699s +                                 fcoltest = colMads_center, fsure = rowMads_R,
699s +                                 na.rm = na.rm, useNames = useNames)
699s +     }
699s +   }
699s + }
702s > 
702s 
702s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
702s Copyright (C) 2024 The R Foundation for Statistical Computing
702s Platform: arm-unknown-linux-gnueabihf (32-bit)
702s 
702s R is free software and comes with ABSOLUTELY NO WARRANTY.
702s You are welcome to redistribute it under certain conditions.
702s Type 'license()' or 'licence()' for distribution details.
702s 
702s R is a collaborative project with many contributors.
702s Type 'contributors()' for more information and
702s 'citation()' on how to cite R or R packages in publications.
702s 
702s Type 'demo()' for some demos, 'help()' for on-line help, or
702s 'help.start()' for an HTML browser interface to help.
702s Type 'q()' to quit R.
702s 
703s > library("matrixStats")
703s > 
703s > rowMeans_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
703s +   res <- rowMeans(x, na.rm = na.rm)
703s +   if (is.na(useNames) || !useNames) names(res) <- NULL
703s +   res
703s + }
703s > 
703s > colMeans_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
703s +   res <- colMeans(x, na.rm = na.rm)
703s +   if (is.na(useNames) || !useNames) names(res) <- NULL
703s +   res
703s + }
703s > 
703s > for (mode in c("integer", "logical", "double")) {
703s +   x <- matrix(-4:4, nrow = 3, ncol = 3)
703s +   storage.mode(x) <- mode
703s +   if (mode == "double") x <- x + 0.1
703s +   
703s +   # To check names attribute
703s +   dimnames <- list(letters[1:3], LETTERS[1:3])
703s +   
703s +   # Test with and without dimnames on x
703s +   for (setDimnames in c(TRUE, FALSE)) {
703s +     if (setDimnames) dimnames(x) <- dimnames
703s +     else dimnames(x) <- NULL
703s +     # Check names attribute
703s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +       y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +       y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +       stopifnot(all.equal(y1, y0))
703s +       
703s +       y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +       y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +       stopifnot(all.equal(y1, y0))
703s +     }
703s +   }
703s + }
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: Single-element matrix
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: Single-element matrix:\n")
703s Special case: Single-element matrix:
703s > for (mode in c("integer", "logical", "double")) {
703s +   x <- matrix(1, nrow = 1, ncol = 1)
703s +   storage.mode(x) <- mode
703s +   
703s +   # To check names attribute
703s +   dimnames <- list("a", "A")
703s +   
703s +   # Test with and without dimnames on x
703s +   for (setDimnames in c(TRUE, FALSE)) {
703s +     if (setDimnames) dimnames(x) <- dimnames
703s +     else dimnames(x) <- NULL
703s +     # Check names attribute
703s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +       y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +       y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +       stopifnot(all.equal(y1, y0))
703s +       
703s +       y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +       y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +       stopifnot(all.equal(y1, y0))
703s +     }
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: Empty matrix
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: Empty matrix:\n")
703s Special case: Empty matrix:
703s > for (mode in c("integer", "logical", "double")) {
703s +   x <- matrix(integer(0), nrow = 0, ncol = 0)
703s +   storage.mode(x) <- mode
703s + 
703s +   y0 <- rowMeans(x, na.rm = FALSE)
703s +   y1 <- rowMeans2(x, na.rm = FALSE)
703s +   stopifnot(all.equal(y1, y0))
703s + 
703s +   y0 <- colMeans(x, na.rm = FALSE)
703s +   y1 <- colMeans2(x, na.rm = FALSE)
703s +   stopifnot(all.equal(y1, y0))
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: All NAs
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: All NAs:\n")
703s Special case: All NAs:
703s > for (mode in c("integer", "logical", "double")) {
703s +   x <- matrix(NA_integer_, nrow = 3, ncol = 3)
703s +   storage.mode(x) <- mode
703s +   
703s +   # To check names attribute
703s +   dimnames <- list(letters[1:3], LETTERS[1:3])
703s +   
703s +   # Test with and without dimnames on x
703s +   for (setDimnames in c(TRUE, FALSE)) {
703s +     if (setDimnames) dimnames(x) <- dimnames
703s +     else dimnames(x) <- NULL
703s +     # Check names attribute
703s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +       y0 <- rowMeans_R(x, na.rm = TRUE, useNames = useNames)
703s +       y1 <- rowMeans2(x, na.rm = TRUE, useNames = useNames)
703s +       stopifnot(all.equal(y1, y0))
703s +       
703s +       y0 <- colMeans_R(x, na.rm = TRUE, useNames = useNames)
703s +       y1 <- colMeans2(x, na.rm = TRUE, useNames = useNames)
703s +       stopifnot(all.equal(y1, y0))
703s +     }
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: All NaNs
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: All NaNs:\n")
703s Special case: All NaNs:
703s > x <- matrix(NA_real_, nrow = 3, ncol = 3)
703s > 
703s > # Test with and without dimnames on x
703s > for (setDimnames in c(TRUE, FALSE)) {
703s +   if (setDimnames) dimnames(x) <- dimnames
703s +   else dimnames(x) <- NULL
703s +   # Check names attribute
703s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +     y0 <- rowMeans_R(x, na.rm = TRUE, useNames = useNames)
703s +     y1 <- rowMeans2(x, na.rm = TRUE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +     
703s +     y0 <- colMeans_R(x, na.rm = TRUE, useNames = useNames)
703s +     y1 <- colMeans2(x, na.rm = TRUE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: All Infs
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: All Infs:\n")
703s Special case: All Infs:
703s > x <- matrix(Inf, nrow = 3, ncol = 3)
703s > 
703s > # Test with and without dimnames on x
703s > for (setDimnames in c(TRUE, FALSE)) {
703s +   if (setDimnames) dimnames(x) <- dimnames
703s +   else dimnames(x) <- NULL
703s +   # Check names attribute
703s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +     y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +     
703s +     y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: All -Infs
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: All -Infs:\n")
703s Special case: All -Infs:
703s > x <- matrix(-Inf, nrow = 3, ncol = 3)
703s > 
703s > # Test with and without dimnames on x
703s > for (setDimnames in c(TRUE, FALSE)) {
703s +   if (setDimnames) dimnames(x) <- dimnames
703s +   else dimnames(x) <- NULL
703s +   # Check names attribute
703s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +     y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +     
703s +     y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: Infs and -Infs
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: Infs and -Infs:\n")
703s Special case: Infs and -Infs:
703s > x <- matrix(c(-Inf, +Inf), nrow = 4, ncol = 4)
703s > 
703s > # To check names attribute
703s > dimnames <- list(letters[1:4], LETTERS[1:4])
703s > 
703s > # Test with and without dimnames on x
703s > for (setDimnames in c(TRUE, FALSE)) {
703s +   if (setDimnames) dimnames(x) <- dimnames
703s +   else dimnames(x) <- NULL
703s +   # Check names attribute
703s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +     y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +     
703s +     y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: NaNs and NAs
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: NaNs and NAs:\n")
703s Special case: NaNs and NAs:
703s > x <- matrix(c(NaN, NA_real_), nrow = 4, ncol = 4)
703s > 
703s > # Test with and without dimnames on x
703s > for (setDimnames in c(TRUE, FALSE)) {
703s +   if (setDimnames) dimnames(x) <- dimnames
703s +   else dimnames(x) <- NULL
703s +   # Check names attribute
703s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +     y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     str(y0)
703s +     stopifnot(all(is.na(y0)), length(unique(y0)) >= 1L)
703s +     y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     str(y1)
703s +     stopifnot(all(is.na(y1)), length(unique(y1)) >= 1L)
703s +     stopifnot(all.equal(y1, y0))
703s +     
703s +     y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all(is.na(y0)), length(unique(y0)) == 1L)
703s +     y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all(is.na(y1)), length(unique(y1)) == 1L)
703s +     stopifnot(all.equal(y1, y0))
703s +   }
703s + }
703s  Named num [1:4] NaN NA NaN NA
703s  - attr(*, "names")= chr [1:4] "a" "b" "c" "d"
703s  Named num [1:4] NaN NA NaN NA
703s  - attr(*, "names")= chr [1:4] "a" "b" "c" "d"
703s  num [1:4] NaN NA NaN NA
703s  num [1:4] NaN NA NaN NA
703s  num [1:4] NaN NA NaN NA
703s  num [1:4] NaN NA NaN NA
703s  num [1:4] NaN NA NaN NA
703s  num [1:4] NaN NA NaN NA
703s > ## NOTE, due to compiler optimization, it is not guaranteed that NA is
703s > ## returned here (as one would expect). NaN might very well be returned,
703s > ## when both NA and NaN are involved.  This is an accepted feature in R,
703s > ## which is documented in help("is.nan").  See also
703s > ## https://stat.ethz.ch/pipermail/r-devel/2017-April/074009.html.
703s > ## Thus, we cannot guarantee that y1 is identical to y0.
703s > 
703s > 
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Special case: Integer overflow with ties
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > cat("Special case: Integer overflow with ties:\n")
703s Special case: Integer overflow with ties:
703s > x <- matrix(.Machine$integer.max, nrow = 4, ncol = 4)
703s > 
703s > # Test with and without dimnames on x
703s > for (setDimnames in c(TRUE, FALSE)) {
703s +   if (setDimnames) dimnames(x) <- dimnames
703s +   else dimnames(x) <- NULL
703s +   # Check names attribute
703s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
703s +     y0 <- rowMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- rowMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +     
703s +     y0 <- colMeans_R(x, na.rm = FALSE, useNames = useNames)
703s +     y1 <- colMeans2(x, na.rm = FALSE, useNames = useNames)
703s +     stopifnot(all.equal(y1, y0))
703s +   }
703s + }
703s > 
703s > 
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > # Consistency checks
703s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
703s > set.seed(1)
703s > 
703s > cat("Consistency checks:\n")
703s Consistency checks:
703s > n_sims <- if (Sys.getenv("_R_CHECK_USE_VALGRIND_") != "") 4L else 20L
703s > for (kk in seq_len(n_sims)) {
703s +   cat("Random test #", kk, "\n", sep = "")
703s + 
703s +   # Simulate data in a matrix of any shape
703s +   dim <- sample(50:200, size = 2)
703s +   n <- prod(dim)
703s +   x <- rnorm(n, sd = 100)
703s +   dim(x) <- dim
703s + 
703s +   # Add NAs?
703s +   if ((kk %% 4) %in% c(3, 0)) {
703s +     cat("Adding NAs\n")
703s +     nna <- sample(n, size = 1)
703s +     na_values <- c(NA_real_, NaN)
703s +     t <- sample(na_values, size = nna, replace = TRUE)
703s +     x[sample(length(x), size = nna)] <- t
703s +   }
703s + 
703s +   # Mode?
703s +   modes <- "double"
703s +   if ((kk %% 4) %in% c(2, 0)) {
703s +     modes <- c("integer", "logical")
703s +   }
703s + 
703s +   for (mode in modes) {
703s +     if (mode != "double") {
703s +       cat(sprintf("Coercing from %s to %s\n", storage.mode(x), mode))
703s +       storage.mode(x) <- mode
703s +     }
703s + 
703s +     na.rm <- sample(c(TRUE, FALSE), size = 1)
703s +   
703s +     # rowMeans2():
703s +     y0 <- rowMeans(x, na.rm = na.rm)
703s +     y1 <- rowMeans2(x, na.rm = na.rm)
703s +     stopifnot(all.equal(y1, y0))
703s +     y2 <- colMeans2(t(x), na.rm = na.rm)
703s +     stopifnot(all.equal(y2, y0))
703s +   
703s +     # colMeans2():
703s +     y0 <- colMeans(x, na.rm = na.rm)
703s +     y1 <- colMeans2(x, na.rm = na.rm)
703s +     stopifnot(all.equal(y1, y0))
703s +     y2 <- rowMeans2(t(x), na.rm = na.rm)
703s +     stopifnot(all.equal(y2, y0))
703s +   }
703s + } # for (kk ...)
703s Random test #1
703s Random test #2
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #3
703s Adding NAs
703s Random test #4
703s Adding NAs
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #5
703s Random test #6
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #7
703s Adding NAs
703s Random test #8
703s Adding NAs
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #9
703s Random test #10
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #11
703s Adding NAs
703s Random test #12
703s Adding NAs
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #13
703s Random test #14
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #15
703s Adding NAs
703s Random test #16
703s Adding NAs
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #17
703s Random test #18
703s Coercing from double to integer
703s Coercing from integer to logical
703s Random test #19
703s Adding NAs
703s Random test #20
703s Adding NAs
703s Coercing from double to integer
703s Coercing from integer to logical
703s > 
704s 
704s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
704s Copyright (C) 2024 The R Foundation for Statistical Computing
704s Platform: arm-unknown-linux-gnueabihf (32-bit)
704s 
704s R is free software and comes with ABSOLUTELY NO WARRANTY.
704s You are welcome to redistribute it under certain conditions.
704s Type 'license()' or 'licence()' for distribution details.
704s 
704s R is a collaborative project with many contributors.
704s Type 'contributors()' for more information and
704s 'citation()' on how to cite R or R packages in publications.
704s 
704s Type 'demo()' for some demos, 'help()' for on-line help, or
704s 'help.start()' for an HTML browser interface to help.
704s Type 'q()' to quit R.
704s 
704s > library("matrixStats")
704s > 
704s > rowMeans_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
704s +   res <- rowMeans(x, na.rm = na.rm)
704s +   if (is.na(useNames) || !useNames) names(res) <- NULL
704s +   res
704s + }
704s > 
704s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
704s > # Subsetted tests
704s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
704s > source("utils/validateIndicesFramework.R")
704s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
704s > storage.mode(x) <- "integer"
704s > 
704s > # To check names attribute
704s > dimnames <- list(letters[1:6], LETTERS[1:6])
704s > 
704s > # Test with and without dimnames on x
704s > for (setDimnames in c(TRUE, FALSE)) {
704s +   if (setDimnames) dimnames(x) <- dimnames
704s +   else dimnames(x) <- NULL
704s +   
704s +   count <- 0L
704s +   for (rows in index_cases) {
704s +     for (cols in index_cases) {
704s +       count <- count + 1L
704s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
704s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
704s +       useNames <- useNames[count %% length(useNames) + 1]
704s +       
704s +       validateIndicesTestMatrix(x, rows, cols,
704s +                                 ftest = rowMeans2, fsure = rowMeans_R,
704s +                                 na.rm = na.rm, useNames = useNames)
704s +       validateIndicesTestMatrix(x, rows, cols,
704s +                                 fcoltest = colMeans2, fsure = rowMeans_R,
704s +                                 na.rm = na.rm, useNames = useNames)
704s +     }
704s +   }
704s + }
705s > 
705s 
705s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
705s Copyright (C) 2024 The R Foundation for Statistical Computing
705s Platform: arm-unknown-linux-gnueabihf (32-bit)
705s 
705s R is free software and comes with ABSOLUTELY NO WARRANTY.
705s You are welcome to redistribute it under certain conditions.
705s Type 'license()' or 'licence()' for distribution details.
705s 
705s R is a collaborative project with many contributors.
705s Type 'contributors()' for more information and
705s 'citation()' on how to cite R or R packages in publications.
705s 
705s Type 'demo()' for some demos, 'help()' for on-line help, or
705s 'help.start()' for an HTML browser interface to help.
705s Type 'q()' to quit R.
705s 
705s > library("matrixStats")
705s > 
705s > rowMedians_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
705s +   res <- apply(x, MARGIN = 1L, FUN = median, na.rm = na.rm)
705s +   if (is.na(useNames) || !useNames) names(res) <- NULL
705s +   res
705s + }
705s > 
705s > colMedians_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
705s +   res <- apply(x, MARGIN = 2L, FUN = median, na.rm = na.rm)
705s +   if (is.na(useNames) || !useNames) names(res) <- NULL
705s +   res
705s + }
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: Non-ties
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: Non-ties:\n")
705s Special case: Non-ties:
705s > for (mode in c("integer", "double")) {
705s +   x <- matrix(1:9 + 0.1, nrow = 3, ncol = 3)
705s +   storage.mode(x) <- mode
705s +   
705s +   # To check names attribute
705s +   dimnames <- list(letters[1:3], LETTERS[1:3])
705s +   
705s +   # Test with and without dimnames on x
705s +   for (setDimnames in c(TRUE, FALSE)) {
705s +     if (setDimnames) dimnames(x) <- dimnames
705s +     else dimnames(x) <- NULL
705s +     # Check names attribute
705s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +       y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +       y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +       
705s +       y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +       y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +     }
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: Ties
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: Ties:\n")
705s Special case: Ties:
705s > for (mode in c("integer", "double")) {
705s +   x <- matrix(1:16 + 0.1, nrow = 4, ncol = 4)
705s +   storage.mode(x) <- mode
705s +   
705s +   # To check names attribute
705s +   dimnames <- list(letters[1:4], LETTERS[1:4])
705s + 
705s +   # Test with and without dimnames on x
705s +   for (setDimnames in c(TRUE, FALSE)) {
705s +     if (setDimnames) dimnames(x) <- dimnames
705s +     else dimnames(x) <- NULL
705s +     # Check names attribute
705s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +       y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +       y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +       
705s +       y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +       y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +     }
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: Single-element matrix
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: Single-element matrix:\n")
705s Special case: Single-element matrix:
705s > for (mode in c("integer", "double")) {
705s +   x <- matrix(1, nrow = 1, ncol = 1)
705s +   storage.mode(x) <- mode
705s +   
705s +   # To check names attribute
705s +   dimnames <- list("a", "A")
705s + 
705s +   # Test with and without dimnames on x
705s +   for (setDimnames in c(TRUE, FALSE)) {
705s +     if (setDimnames) dimnames(x) <- dimnames
705s +     else dimnames(x) <- NULL
705s +     # Check names attribute
705s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +       y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +       y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +       
705s +       y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +       y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +     }
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: Empty matrix
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: Empty matrix:\n")
705s Special case: Empty matrix:
705s > for (mode in c("integer", "double")) {
705s +   x <- matrix(integer(0), nrow = 0, ncol = 0)
705s +   storage.mode(x) <- mode
705s + 
705s +   y0 <- rowMedians_R(x, na.rm = FALSE)
705s +   y1 <- rowMedians(x, na.rm = FALSE)
705s +   stopifnot(all.equal(y1, y0))
705s + 
705s +   y0 <- colMedians_R(x, na.rm = FALSE)
705s +   y1 <- colMedians(x, na.rm = FALSE)
705s +   stopifnot(all.equal(y1, y0))
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: All NAs
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: All NAs:\n")
705s Special case: All NAs:
705s > for (mode in c("integer", "double")) {
705s +   x <- matrix(NA_integer_, nrow = 3, ncol = 3)
705s +   storage.mode(x) <- mode
705s +   
705s +   # To check names attribute
705s +   dimnames <- list(letters[1:3], LETTERS[1:3])
705s + 
705s +   # Test with and without dimnames on x
705s +   for (setDimnames in c(TRUE, FALSE)) {
705s +     if (setDimnames) dimnames(x) <- dimnames
705s +     else dimnames(x) <- NULL
705s +     # Check names attribute
705s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +       y0 <- rowMedians_R(x, na.rm = TRUE, useNames = useNames)
705s +       y1 <- rowMedians(x, na.rm = TRUE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +       
705s +       y0 <- colMedians_R(x, na.rm = TRUE, useNames = useNames)
705s +       y1 <- colMedians(x, na.rm = TRUE, useNames = useNames)
705s +       stopifnot(all.equal(y1, y0))
705s +     }
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: All NaNs
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: All NaNs:\n")
705s Special case: All NaNs:
705s > x <- matrix(NA_real_, nrow = 3, ncol = 3)
705s > 
705s > # Test with and without dimnames on x
705s > for (setDimnames in c(TRUE, FALSE)) {
705s +   if (setDimnames) dimnames(x) <- dimnames
705s +   else dimnames(x) <- NULL
705s +   # Check names attribute
705s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +     y0 <- rowMedians_R(x, na.rm = TRUE, useNames = useNames)
705s +     y1 <- rowMedians(x, na.rm = TRUE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +     
705s +     y0 <- colMedians_R(x, na.rm = TRUE, useNames = useNames)
705s +     y1 <- colMedians(x, na.rm = TRUE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: All Infs
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: All Infs:\n")
705s Special case: All Infs:
705s > x <- matrix(Inf, nrow = 3, ncol = 3)
705s > 
705s > # Test with and without dimnames on x
705s > for (setDimnames in c(TRUE, FALSE)) {
705s +   if (setDimnames) dimnames(x) <- dimnames
705s +   else dimnames(x) <- NULL
705s +   # Check names attribute
705s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +     y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +     
705s +     y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: All -Infs
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: All -Infs:\n")
705s Special case: All -Infs:
705s > x <- matrix(-Inf, nrow = 3, ncol = 3)
705s > 
705s > # Test with and without dimnames on x
705s > for (setDimnames in c(TRUE, FALSE)) {
705s +   if (setDimnames) dimnames(x) <- dimnames
705s +   else dimnames(x) <- NULL
705s +   # Check names attribute
705s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +     y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +     
705s +     y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: Infs and -Infs
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: Infs and -Infs:\n")
705s Special case: Infs and -Infs:
705s > x <- matrix(c(-Inf, +Inf), nrow = 4, ncol = 4)
705s > 
705s > # To check names attribute
705s > dimnames <- list(letters[1:4], LETTERS[1:4])
705s > 
705s > # Test with and without dimnames on x
705s > for (setDimnames in c(TRUE, FALSE)) {
705s +   if (setDimnames) dimnames(x) <- dimnames
705s +   else dimnames(x) <- NULL
705s +   # Check names attribute
705s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +     y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +     
705s +     y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Special case: Integer overflow with ties
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > cat("Special case: Integer overflow with ties:\n")
705s Special case: Integer overflow with ties:
705s > x <- matrix(.Machine$integer.max, nrow = 4, ncol = 4)
705s > 
705s > # Test with and without dimnames on x
705s > for (setDimnames in c(TRUE, FALSE)) {
705s +   if (setDimnames) dimnames(x) <- dimnames
705s +   else dimnames(x) <- NULL
705s +   # Check names attribute
705s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
705s +     y0 <- rowMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- rowMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +     
705s +     y0 <- colMedians_R(x, na.rm = FALSE, useNames = useNames)
705s +     y1 <- colMedians(x, na.rm = FALSE, useNames = useNames)
705s +     stopifnot(all.equal(y1, y0))
705s +   }
705s + }
705s > 
705s > 
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > # Consistency checks
705s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
705s > set.seed(1)
705s > 
705s > cat("Consistency checks:\n")
705s Consistency checks:
705s > n_sims <- if (Sys.getenv("_R_CHECK_USE_VALGRIND_") != "") 4L else 20L
705s > for (kk in seq_len(n_sims)) {
705s +   cat("Random test #", kk, "\n", sep = "")
705s + 
705s +   # Simulate data in a matrix of any shape
705s +   dim <- sample(50:200, size = 2)
705s +   n <- prod(dim)
705s +   x <- rnorm(n, sd = 100)
705s +   dim(x) <- dim
705s + 
705s +   # Add NAs?
705s +   if ((kk %% 4) %in% c(3, 0)) {
705s +     cat("Adding NAs\n")
705s +     nna <- sample(n, size = 1)
705s +     na_values <- c(NA_real_, NaN)
705s +     t <- sample(na_values, size = nna, replace = TRUE)
705s +     x[sample(length(x), size = nna)] <- t
705s +   }
705s + 
705s +   # Integer or double?
705s +   if ((kk %% 4) %in% c(2, 0)) {
705s +     cat("Coercing to integers\n")
705s +     storage.mode(x) <- "integer"
705s +   }
705s + 
705s +   na.rm <- sample(c(TRUE, FALSE), size = 1)
705s + 
705s +   # rowMedians():
705s +   y0 <- rowMedians_R(x, na.rm = na.rm)
705s +   y1 <- rowMedians(x, na.rm = na.rm)
705s +   stopifnot(all.equal(y1, y0))
705s +   y2 <- colMedians(t(x), na.rm = na.rm)
705s +   stopifnot(all.equal(y2, y0))
705s + 
705s +   # colMedians():
705s +   y0 <- colMedians_R(x, na.rm = na.rm)
705s +   y1 <- colMedians(x, na.rm = na.rm)
705s +   stopifnot(all.equal(y1, y0))
705s +   y2 <- rowMedians(t(x), na.rm = na.rm)
705s +   stopifnot(all.equal(y2, y0))
705s + } # for (kk ...)
705s Random test #1
705s Random test #2
705s Coercing to integers
705s Random test #3
705s Adding NAs
706s Random test #4
706s Adding NAs
706s Coercing to integers
706s Random test #5
706s Random test #6
706s Coercing to integers
706s Random test #7
706s Adding NAs
706s Random test #8
706s Adding NAs
706s Coercing to integers
706s Random test #9
706s Random test #10
706s Coercing to integers
706s Random test #11
706s Adding NAs
706s Random test #12
706s Adding NAs
706s Coercing to integers
706s Random test #13
706s Random test #14
706s Coercing to integers
706s Random test #15
706s Adding NAs
706s Random test #16
706s Adding NAs
706s Coercing to integers
706s Random test #17
706s Random test #18
706s Coercing to integers
706s Random test #19
706s Adding NAs
706s Random test #20
706s Adding NAs
706s Coercing to integers
706s > 
706s 
706s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
706s Copyright (C) 2024 The R Foundation for Statistical Computing
706s Platform: arm-unknown-linux-gnueabihf (32-bit)
706s 
706s R is free software and comes with ABSOLUTELY NO WARRANTY.
706s You are welcome to redistribute it under certain conditions.
706s Type 'license()' or 'licence()' for distribution details.
706s 
706s R is a collaborative project with many contributors.
706s Type 'contributors()' for more information and
706s 'citation()' on how to cite R or R packages in publications.
706s 
706s Type 'demo()' for some demos, 'help()' for on-line help, or
706s 'help.start()' for an HTML browser interface to help.
706s Type 'q()' to quit R.
706s 
707s > library("matrixStats")
707s > 
707s > rowMedians_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
707s +   res <- apply(x, MARGIN = 1L, FUN = median, na.rm = na.rm)
707s +   if (is.na(useNames) || !useNames) names(res) <- NULL
707s +   res
707s + }
707s > 
707s > colMedians_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
707s +   res <- apply(x, MARGIN = 2L, FUN = median, na.rm = na.rm)
707s +   if (is.na(useNames) || !useNames) names(res) <- NULL
707s +   res
707s + }
707s > 
707s > 
707s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
707s > # Subsetted tests
707s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
707s > source("utils/validateIndicesFramework.R")
707s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
707s > storage.mode(x) <- "integer"
707s > 
707s > # To check names attribute
707s > dimnames <- list(letters[1:6], LETTERS[1:6])
707s > 
707s > # Test with and without dimnames on x
707s > for (setDimnames in c(TRUE, FALSE)) {
707s +   if (setDimnames) dimnames(x) <- dimnames
707s +   else dimnames(x) <- NULL
707s + 
707s +   count <- 0L
707s +   for (rows in index_cases) {
707s +     for (cols in index_cases) {
707s +       count <- count + 1L
707s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
707s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
707s +       useNames <- useNames[count %% length(useNames) + 1]
707s +       
707s +       validateIndicesTestMatrix(x, rows, cols,
707s +                                 ftest = rowMedians, fsure = rowMedians_R,
707s +                                 na.rm = na.rm, useNames = useNames)
707s +       validateIndicesTestMatrix(x, rows, cols,
707s +                                 fcoltest = colMedians, fsure = rowMedians_R,
707s +                                 na.rm = na.rm, useNames = useNames)
707s +     }
707s +   }
707s + }
708s > 
708s 
708s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
708s Copyright (C) 2024 The R Foundation for Statistical Computing
708s Platform: arm-unknown-linux-gnueabihf (32-bit)
708s 
708s R is free software and comes with ABSOLUTELY NO WARRANTY.
708s You are welcome to redistribute it under certain conditions.
708s Type 'license()' or 'licence()' for distribution details.
708s 
708s R is a collaborative project with many contributors.
708s Type 'contributors()' for more information and
708s 'citation()' on how to cite R or R packages in publications.
708s 
708s Type 'demo()' for some demos, 'help()' for on-line help, or
708s 'help.start()' for an HTML browser interface to help.
708s Type 'q()' to quit R.
708s 
708s > library("matrixStats")
708s > library("stats")
708s > 
708s > asWhich <- function(probs, max) {
708s +   idx <- as.integer(round(probs * max))
708s +   if (idx < 1L) {
708s +     idx <- 1L
708s +   } else if (idx > max) {
708s +     idx <- max
708s +   }
708s +   idx
708s + } # asWhich()
708s > 
708s > rowOrderStats_R <- function(x, probs, ..., useNames = NA) {
708s +   ans <- apply(x, MARGIN = 1L, FUN = quantile, probs = probs, type = 3L)
708s +   
708s +   # Remove Attributes
708s +   if (is.na(useNames) || !useNames || length(ans) == 0L) attributes(ans) <- NULL
708s +   ans
708s + } # rowOrderStats_R()
708s > 
708s > 
708s > set.seed(1)
708s > 
708s > 
708s > # Simulate data in a matrix of any shape
708s > nrow <- 60L
708s > ncol <- 30L
708s > x <- rnorm(nrow * ncol)
708s > dim(x) <- c(nrow, ncol)
708s > probs <- 0.3
708s > which <- asWhich(probs, max = ncol)
708s > 
708s > y0 <- rowOrderStats_R(x, probs = probs)
708s > y1 <- rowOrderStats(x, which = which)
708s > stopifnot(all.equal(y1, y0))
708s > y2 <- colOrderStats(t(x), which = which)
708s > stopifnot(all.equal(y2, y0))
708s > 
708s > 
708s > 
708s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
708s > # Consistency checks
708s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
708s > for (mode in c("integer", "double")) {
708s +   cat("Consistency checks without NAs:\n")
708s +   for (kk in 1:3) {
708s +     cat("Random test #", kk, "\n", sep = "")
708s + 
708s +     # Simulate data in a matrix of any shape
708s +     nrow <- sample(20L, size = 1L)
708s +     ncol <- sample(20L, size = 1L)
708s +     x <- rnorm(nrow * ncol)
708s +     dim(x) <- c(nrow, ncol)
708s + 
708s +     cat("mode: ", mode, "\n", sep = "")
708s +     storage.mode(x) <- mode
708s +     str(x)
708s + 
708s +     probs <- runif(1)
708s +     which <- asWhich(probs, max = ncol)
708s + 
708s +     y0 <- rowOrderStats_R(x, probs = probs)
708s +     y1 <- rowOrderStats(x, which = which)
708s +     stopifnot(all.equal(y1, y0))
708s +     y2 <- colOrderStats(t(x), which = which)
708s +     stopifnot(all.equal(y2, y0))
708s +   } # for (kk in ...)
708s + } # for (mode ...)
708s Consistency checks without NAs:
708s Random test #1
708s mode: integer
708s  int [1:14, 1:6] 0 0 1 0 2 -1 1 0 0 0 ...
708s Random test #2
708s mode: integer
708s  int [1:8, 1:13] 0 0 1 -2 0 0 0 0 1 0 ...
708s Random test #3
708s mode: integer
708s  int [1:20, 1:17] 0 0 0 0 1 0 1 0 0 -1 ...
708s Consistency checks without NAs:
708s Random test #1
708s mode: double
708s  num [1:9, 1:5] -1.4286 -0.00386 -0.70456 -0.29242 -0.49607 ...
708s Random test #2
708s mode: double
708s  num [1:11, 1:20] -0.796 0.482 -0.952 0.5 1.242 ...
708s Random test #3
708s mode: double
708s  num [1:7, 1:18] 1.553 -2.405 0.167 -0.403 -1.746 ...
708s > 
708s > 
708s > # Check names attribute
708s > x <- matrix(1:9 + 0.1, nrow = 3L, ncol = 3L)
708s > 
708s > probs <- runif(1)
708s > which <- asWhich(probs, max = ncol(x))
708s > 
708s > dimnames <- list(letters[1:3], LETTERS[1:3])
708s > 
708s > # Test with and without dimnames on x
708s > for (setDimnames in c(TRUE, FALSE)) {
708s +   if (setDimnames) dimnames(x) <- dimnames
708s +   else dimnames(x) <- NULL
708s +   # Check names attribute
708s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
708s +     y0 <- rowOrderStats_R(x, probs = probs, useNames = useNames)
708s +     y1 <- rowOrderStats(x, which = which, useNames = useNames)
708s +     stopifnot(all.equal(y1, y0))
708s +     y2 <- colOrderStats(t(x), which = which, useNames = useNames)
708s +     stopifnot(all.equal(y2, y0))    
708s +   }
708s + }
708s > 
709s 
709s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
709s Copyright (C) 2024 The R Foundation for Statistical Computing
709s Platform: arm-unknown-linux-gnueabihf (32-bit)
709s 
709s R is free software and comes with ABSOLUTELY NO WARRANTY.
709s You are welcome to redistribute it under certain conditions.
709s Type 'license()' or 'licence()' for distribution details.
709s 
709s R is a collaborative project with many contributors.
709s Type 'contributors()' for more information and
709s 'citation()' on how to cite R or R packages in publications.
709s 
709s Type 'demo()' for some demos, 'help()' for on-line help, or
709s 'help.start()' for an HTML browser interface to help.
709s Type 'q()' to quit R.
709s 
709s > library("matrixStats")
709s > 
709s > rowOrderStats_R <- function(x, probs, ..., useNames = NA) {
709s +   ans <- apply(x, MARGIN = 1L, FUN = quantile, probs = probs, type = 3L)
709s + 
709s +   # Remove Attributes
709s +   if (is.na(useNames) || !useNames || length(ans) == 0L) attributes(ans) <- NULL
709s +   ans
709s + } # rowOrderStats_R()
709s > 
709s > 
709s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
709s > # Subsetted tests
709s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
709s > source("utils/validateIndicesFramework.R")
709s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
709s > storage.mode(x) <- "integer"
709s > 
709s > # To check names attribute
709s > dimnames <- list(letters[1:6], LETTERS[1:6])
709s > 
709s > probs <- 0.3
709s > # Test with and without dimnames on x
709s > for (setDimnames in c(TRUE, FALSE)) {
709s +   if (setDimnames) dimnames(x) <- dimnames
709s +   else dimnames(x) <- NULL
709s +   for (rows in index_cases) {
709s +     for (cols in index_cases) {
709s +       # Check names attribute
709s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
709s +         if (is.null(cols)) which <- round(probs * ncol(x))
709s +         else {
709s +           xxrows <- rows
709s +           suppressWarnings({
709s +             xx <- tryCatch(x[, cols, drop = FALSE], error = function(c) "error")
709s +             if (identical(xx, "error")) which <- 0L
709s +             else which <- round(probs * ncol(xx))
709s +           })
709s +         }
709s +         if (which == 0L) next
709s +     
709s +         validateIndicesTestMatrix(x, rows, cols,
709s +                                   ftest = rowOrderStats, fsure = rowOrderStats_R,
709s +                                   which = which, probs = probs, useNames = useNames)
709s +         validateIndicesTestMatrix(x, rows, cols,
709s +                                   fcoltest = colOrderStats, fsure = rowOrderStats_R,
709s +                                   which = which, probs = probs, useNames = useNames)
709s +       }
709s +     }
709s +   }
709s + }
712s > 
712s 
712s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
712s Copyright (C) 2024 The R Foundation for Statistical Computing
712s Platform: arm-unknown-linux-gnueabihf (32-bit)
712s 
712s R is free software and comes with ABSOLUTELY NO WARRANTY.
712s You are welcome to redistribute it under certain conditions.
712s Type 'license()' or 'licence()' for distribution details.
712s 
712s R is a collaborative project with many contributors.
712s Type 'contributors()' for more information and
712s 'citation()' on how to cite R or R packages in publications.
712s 
712s Type 'demo()' for some demos, 'help()' for on-line help, or
712s 'help.start()' for an HTML browser interface to help.
712s Type 'q()' to quit R.
712s 
712s > library("matrixStats")
712s > 
712s > rowProds_R <- function(x, FUN = prod, na.rm = FALSE, ..., useNames = NA) {
712s +   res <- apply(x, MARGIN = 1L, FUN = FUN, na.rm = na.rm)
712s +   if (is.na(useNames) || !useNames) names(res) <- NULL
712s +   res
712s + }
712s > 
712s > all.equal.na <- function(target, current, ...) {
712s +   # Computations involving NaN may return NaN or NA, cf. ?is.nan
712s +   current[is.nan(current)] <- NA_real_
712s +   target[is.nan(target)] <- NA_real_
712s +   all.equal(target, current, ...)
712s + }
712s > 
712s > for (mode in c("integer", "double")) {
712s +   # Missing values
712s +   x <- matrix(c(1, NA, NaN, 1, 1, 0, 1, 0), nrow = 4, ncol = 2)
712s +   cat("mode: ", mode, "\n", sep = "")
712s +   storage.mode(x) <- mode
712s +   str(x)
712s +   
712s +   # To check names attribute
712s +   dimnames <- list(letters[1:4], LETTERS[1:2])
712s +   
712s +   # Test with and without dimnames on x
712s +   for (setDimnames in c(TRUE, FALSE)) {
712s +     if (setDimnames) dimnames(x) <- dimnames
712s +     else dimnames(x) <- NULL
712s +     # Check names attribute
712s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
712s +       y0 <- rowProds_R(x, na.rm = TRUE, useNames = useNames)
712s +       print(y0)
712s +       y1 <- rowProds(x, na.rm = TRUE, useNames = useNames)
712s +       print(y1)
712s +       y2 <- colProds(t(x), na.rm = TRUE, useNames = useNames)
712s +       print(y2)
712s +       stopifnot(all.equal(y1, y0))
712s +       stopifnot(all.equal(y2, y1))
712s +       
712s +       # Missing values
712s +       y0 <- rowProds_R(x, na.rm = FALSE, useNames = useNames)
712s +       print(y0)
712s +       y1 <- rowProds(x, na.rm = FALSE, useNames = useNames)
712s +       print(y1)
712s +       y2 <- colProds(t(x), na.rm = FALSE, useNames = useNames)
712s +       print(y2)
712s +       stopifnot(all.equal(y1, y0))
712s +       stopifnot(all.equal(y2, y1))
712s +       
712s +       # "Empty" rows
712s +       y0 <- rowProds_R(x[integer(0), , drop = FALSE], na.rm = FALSE, useNames = useNames)
712s +       print(y0)
712s +       y1 <- rowProds(x[integer(0), , drop = FALSE], na.rm = FALSE, useNames = useNames)
712s +       print(y1)
712s +       y2 <- colProds(t(x[integer(0), , drop = FALSE]), na.rm = FALSE, useNames = useNames)
712s +       print(y2)
712s +       stopifnot(all.equal.na(y1, y0))
712s +       stopifnot(all.equal(y2, y1))
712s +       stopifnot(length(y1) == 0L)
712s +       
712s +       # Using product()
712s +       y1 <- rowProds(x, method = "expSumLog", na.rm = FALSE, useNames = useNames)
712s +       print(y1)
712s +       y2 <- colProds(t(x), method = "expSumLog", na.rm = FALSE, useNames = useNames)
712s +       print(y2)
712s +       stopifnot(all.equal(y2, y1))
712s +     }
712s +   }
712s + } # for (mode ...)
712s mode: integer
712s  int [1:4, 1:2] 1 NA NA 1 1 0 1 0
712s a b c d 
712s 1 0 1 0 
712s a b c d 
712s 1 0 1 0 
712s a b c d 
712s 1 0 1 0 
712s  a  b  c  d 
712s  1 NA NA  0 
712s  a  b  c  d 
712s  1 NA NA  0 
712s  a  b  c  d 
712s  1 NA NA  0 
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s  a  b  c  d 
712s  1 NA NA  0 
712s  a  b  c  d 
712s  1 NA NA  0 
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s mode: double
712s  num [1:4, 1:2] 1 NA NaN 1 1 0 1 0
712s a b c d 
712s 1 0 1 0 
712s a b c d 
712s 1 0 1 0 
712s a b c d 
712s 1 0 1 0 
712s   a   b   c   d 
712s   1  NA NaN   0 
712s   a   b   c   d 
712s   1  NA NaN   0 
712s   a   b   c   d 
712s   1  NA NaN   0 
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s  a  b  c  d 
712s  1 NA NA  0 
712s  a  b  c  d 
712s  1 NA NA  0 
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1]   1  NA NaN   0
712s [1]   1  NA NaN   0
712s [1]   1  NA NaN   0
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1]   1  NA NaN   0
712s [1]   1  NA NaN   0
712s [1]   1  NA NaN   0
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1] 1 0 1 0
712s [1]   1  NA NaN   0
712s [1]   1  NA NaN   0
712s [1]   1  NA NaN   0
712s numeric(0)
712s numeric(0)
712s numeric(0)
712s [1]  1 NA NA  0
712s [1]  1 NA NA  0
712s > 
712s > 
712s > # Bug report 2012-06-25
712s > x <- matrix(c(1, 1, 1, 1, 1, 0, 1, 0), nrow = 4, ncol = 2)
712s > y0 <- rowProds_R(x)
712s > print(y0)
712s [1] 1 0 1 0
712s > y1 <- rowProds(x)
712s > print(y1)
712s [1] 1 0 1 0
712s > y2 <- colProds(t(x))
712s > print(y2)
712s [1] 1 0 1 0
712s > stopifnot(all.equal.na(y1, y0))
712s > stopifnot(all.equal.na(y1, x[, 1] * x[, 2]))
712s > stopifnot(all.equal.na(y2, y1))
712s > # Check names attribute
712s > dimnames(x) <- dimnames
712s > y0 <- rowProds_R(x, useNames = TRUE)
712s > print(y0)
712s a b c d 
712s 1 0 1 0 
712s > y1 <- rowProds(x, useNames = TRUE)
712s > print(y1)
712s a b c d 
712s 1 0 1 0 
712s > y2 <- colProds(t(x), useNames = TRUE)
712s > print(y2)
712s a b c d 
712s 1 0 1 0 
712s > stopifnot(all.equal.na(y1, y0))
712s > stopifnot(all.equal.na(y1, x[, 1] * x[, 2]))
712s > stopifnot(all.equal.na(y2, y1))
712s > 
712s > # Bug report 2014-03-25 ("all rows contains a zero")
712s > x <- matrix(c(0, 1, 1, 0), nrow = 2, ncol = 2)
712s > # To check names attribute
712s > dimnames <- list(letters[1:2], LETTERS[1:2])
712s > y0 <- rowProds_R(x)
712s > print(y0)
712s [1] 0 0
712s > y1 <- rowProds(x)
712s > print(y1)
712s [1] 0 0
712s > y2 <- colProds(t(x))
712s > print(y2)
712s [1] 0 0
712s > stopifnot(all.equal.na(y1, y0))
712s > stopifnot(all.equal.na(y1, c(0, 0)))
712s > stopifnot(all.equal.na(y2, y1))
712s > # Check names attribute
712s > dimnames(x) <- dimnames
712s > y0 <- rowProds_R(x, useNames = TRUE)
712s > print(y0)
712s a b 
712s 0 0 
712s > y1 <- rowProds(x, useNames = TRUE)
712s > print(y1)
712s a b 
712s 0 0 
712s > y2 <- colProds(t(x), useNames = TRUE)
712s > print(y2)
712s a b 
712s 0 0 
712s > stopifnot(all.equal.na(y1, y0))
712s > stopifnot(all.equal.na(y2, y1))
712s > 
712s 
712s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
712s Copyright (C) 2024 The R Foundation for Statistical Computing
712s Platform: arm-unknown-linux-gnueabihf (32-bit)
712s 
712s R is free software and comes with ABSOLUTELY NO WARRANTY.
712s You are welcome to redistribute it under certain conditions.
712s Type 'license()' or 'licence()' for distribution details.
712s 
712s R is a collaborative project with many contributors.
712s Type 'contributors()' for more information and
712s 'citation()' on how to cite R or R packages in publications.
712s 
712s Type 'demo()' for some demos, 'help()' for on-line help, or
712s 'help.start()' for an HTML browser interface to help.
712s Type 'q()' to quit R.
712s 
713s > library("matrixStats")
713s > 
713s > rowProds_R <- function(x, FUN = prod, na.rm = FALSE, ..., useNames = NA) {
713s +   res <- apply(x, MARGIN = 1L, FUN = FUN, na.rm = na.rm)
713s +   if (is.na(useNames) || !useNames) names(res) <- NULL
713s +   res
713s + }
713s > 
713s > 
713s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
713s > # Subsetted tests
713s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
713s > source("utils/validateIndicesFramework.R")
713s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
713s > storage.mode(x) <- "integer"
713s > 
713s > # To check names attribute
713s > dimnames <- list(letters[1:6], LETTERS[1:6])
713s > 
713s > # Test with and without dimnames on x
713s > for (setDimnames in c(TRUE, FALSE)) {
713s +   if (setDimnames) dimnames(x) <- dimnames
713s +   else dimnames(x) <- NULL
713s +   for (rows in index_cases) {
713s +     for (cols in index_cases) {
713s +       for (na.rm in c(TRUE, FALSE)) {
713s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
713s +           validateIndicesTestMatrix(x, rows, cols,
713s +                                     ftest = rowProds, fsure = rowProds_R,
713s +                                     method = "expSumLog",
713s +                                     FUN = product, na.rm = na.rm, useNames = useNames)
713s +           validateIndicesTestMatrix(x, rows, cols,
713s +                                     fcoltest = colProds, fsure = rowProds_R,
713s +                                     method = "expSumLog",
713s +                                     FUN = product, na.rm = na.rm, useNames = useNames)
713s +         }
713s +       }
713s +     }
713s +   }
713s + }
716s > 
716s 
716s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
716s Copyright (C) 2024 The R Foundation for Statistical Computing
716s Platform: arm-unknown-linux-gnueabihf (32-bit)
716s 
716s R is free software and comes with ABSOLUTELY NO WARRANTY.
716s You are welcome to redistribute it under certain conditions.
716s Type 'license()' or 'licence()' for distribution details.
716s 
716s R is a collaborative project with many contributors.
716s Type 'contributors()' for more information and
716s 'citation()' on how to cite R or R packages in publications.
716s 
716s Type 'demo()' for some demos, 'help()' for on-line help, or
716s 'help.start()' for an HTML browser interface to help.
716s Type 'q()' to quit R.
716s 
716s > library("matrixStats")
716s > 
716s > ## Create isFALSE() if running on an old version of R
716s > if (!exists("isFALSE", mode="function")) {
716s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
716s + }
716s > 
716s > rowQuantiles_R <- function(x, probs = c(0, 0.25, 0.50, 0.75, 1), na.rm = FALSE, drop = TRUE, type = 7L, ..., useNames = NA) {
716s +   q <- apply(x, MARGIN = 1L, FUN = function(x, probs, na.rm) {
716s +     if (!na.rm && any(is.na(x))) {
716s +       na_value <- NA_real_
716s +       if (type != 7L) storage.mode(na_value) <- storage.mode(x)
716s +       rep(na_value, times = length(probs))
716s +     } else {
716s +       as.vector(quantile(x, probs = probs, na.rm = na.rm, type = type, names = FALSE, ...))
716s +     }
716s +   }, probs = probs, na.rm = na.rm)
716s + 
716s +   if (!is.null(dim(q))) q <- t(q)
716s +   else dim(q) <- c(nrow(x), length(probs))
716s + 
716s +   colnames(q) <- matrixStats:::quantile_probs_names(probs)
716s +   rownames(q) <- rownames(x)
716s +   if (isFALSE(useNames)) dimnames(q) <- NULL
716s + 
716s +   if (drop) q <- drop(q)
716s +   q
716s + }
716s > 
716s > 
716s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
716s > # Test with multiple quantiles
716s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
716s > for (mode in c("logical", "integer", "double")) {
716s +   cat("mode: ", mode, "\n", sep = "")
716s +   x <- matrix(1:40 + 0.1, nrow = 8, ncol = 5)
716s +   storage.mode(x) <- mode
716s +   dimnames <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
716s +   str(x)
716s + 
716s +   probs <- c(0, 0.5, 1)
716s +   # Test with and without dimnames on x
716s +   for (setDimnames in c(TRUE, FALSE)) {
716s +     if (setDimnames) dimnames(x) <- dimnames
716s +     else dimnames(x) <- NULL    
716s +     # Check names attribute
716s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
716s +       q0 <- rowQuantiles_R(x, probs = probs, useNames = useNames)
716s +       print(q0)
716s +       q1 <- rowQuantiles(x, probs = probs, useNames = useNames)
716s +       print(q1)
716s +       ## FIXME: Workaround for R (< 3.0.0)
716s +       if (getRversion() < "3.0.0" && mode == "logical") storage.mode(q1) <- storage.mode(q0)
716s +       stopifnot(all.equal(q1, q0))
716s +       q2 <- colQuantiles(t(x), probs = probs, useNames = useNames)
716s +       ## FIXME: Workaround for R (< 3.0.0)
716s +       if (getRversion() < "3.0.0" && mode == "logical") storage.mode(q2) <- storage.mode(q0)
716s +       stopifnot(all.equal(q2, q0))      
716s +     }
716s +   }
716s + } # for (mode ...)
716s mode: logical
716s  logi [1:8, 1:5] TRUE TRUE TRUE TRUE TRUE TRUE ...
716s   0% 50% 100%
716s a  1   1    1
716s b  1   1    1
716s c  1   1    1
716s d  1   1    1
716s e  1   1    1
716s f  1   1    1
716s g  1   1    1
716s h  1   1    1
716s   0% 50% 100%
716s a  1   1    1
716s b  1   1    1
716s c  1   1    1
716s d  1   1    1
716s e  1   1    1
716s f  1   1    1
716s g  1   1    1
716s h  1   1    1
717s      [,1] [,2] [,3]
717s [1,]    1    1    1
717s [2,]    1    1    1
717s [3,]    1    1    1
717s [4,]    1    1    1
717s [5,]    1    1    1
717s [6,]    1    1    1
717s [7,]    1    1    1
717s [8,]    1    1    1
717s      [,1] [,2] [,3]
717s [1,]    1    1    1
717s [2,]    1    1    1
717s [3,]    1    1    1
717s [4,]    1    1    1
717s [5,]    1    1    1
717s [6,]    1    1    1
717s [7,]    1    1    1
717s [8,]    1    1    1
717s      0% 50% 100%
717s [1,]  1   1    1
717s [2,]  1   1    1
717s [3,]  1   1    1
717s [4,]  1   1    1
717s [5,]  1   1    1
717s [6,]  1   1    1
717s [7,]  1   1    1
717s [8,]  1   1    1
717s      0% 50% 100%
717s [1,]  1   1    1
717s [2,]  1   1    1
717s [3,]  1   1    1
717s [4,]  1   1    1
717s [5,]  1   1    1
717s [6,]  1   1    1
717s [7,]  1   1    1
717s [8,]  1   1    1
717s      [,1] [,2] [,3]
717s [1,]    1    1    1
717s [2,]    1    1    1
717s [3,]    1    1    1
717s [4,]    1    1    1
717s [5,]    1    1    1
717s [6,]    1    1    1
717s [7,]    1    1    1
717s [8,]    1    1    1
717s      [,1] [,2] [,3]
717s [1,]    1    1    1
717s [2,]    1    1    1
717s [3,]    1    1    1
717s [4,]    1    1    1
717s [5,]    1    1    1
717s [6,]    1    1    1
717s [7,]    1    1    1
717s [8,]    1    1    1
717s mode: integer
717s  int [1:8, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
717s   0% 50% 100%
717s a  1  17   33
717s b  2  18   34
717s c  3  19   35
717s d  4  20   36
717s e  5  21   37
717s f  6  22   38
717s g  7  23   39
717s h  8  24   40
717s   0% 50% 100%
717s a  1  17   33
717s b  2  18   34
717s c  3  19   35
717s d  4  20   36
717s e  5  21   37
717s f  6  22   38
717s g  7  23   39
717s h  8  24   40
717s      [,1] [,2] [,3]
717s [1,]    1   17   33
717s [2,]    2   18   34
717s [3,]    3   19   35
717s [4,]    4   20   36
717s [5,]    5   21   37
717s [6,]    6   22   38
717s [7,]    7   23   39
717s [8,]    8   24   40
717s      [,1] [,2] [,3]
717s [1,]    1   17   33
717s [2,]    2   18   34
717s [3,]    3   19   35
717s [4,]    4   20   36
717s [5,]    5   21   37
717s [6,]    6   22   38
717s [7,]    7   23   39
717s [8,]    8   24   40
717s      0% 50% 100%
717s [1,]  1  17   33
717s [2,]  2  18   34
717s [3,]  3  19   35
717s [4,]  4  20   36
717s [5,]  5  21   37
717s [6,]  6  22   38
717s [7,]  7  23   39
717s [8,]  8  24   40
717s      0% 50% 100%
717s [1,]  1  17   33
717s [2,]  2  18   34
717s [3,]  3  19   35
717s [4,]  4  20   36
717s [5,]  5  21   37
717s [6,]  6  22   38
717s [7,]  7  23   39
717s [8,]  8  24   40
717s      [,1] [,2] [,3]
717s [1,]    1   17   33
717s [2,]    2   18   34
717s [3,]    3   19   35
717s [4,]    4   20   36
717s [5,]    5   21   37
717s [6,]    6   22   38
717s [7,]    7   23   39
717s [8,]    8   24   40
717s      [,1] [,2] [,3]
717s [1,]    1   17   33
717s [2,]    2   18   34
717s [3,]    3   19   35
717s [4,]    4   20   36
717s [5,]    5   21   37
717s [6,]    6   22   38
717s [7,]    7   23   39
717s [8,]    8   24   40
717s mode: double
717s  num [1:8, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
717s    0%  50% 100%
717s a 1.1 17.1 33.1
717s b 2.1 18.1 34.1
717s c 3.1 19.1 35.1
717s d 4.1 20.1 36.1
717s e 5.1 21.1 37.1
717s f 6.1 22.1 38.1
717s g 7.1 23.1 39.1
717s h 8.1 24.1 40.1
717s    0%  50% 100%
717s a 1.1 17.1 33.1
717s b 2.1 18.1 34.1
717s c 3.1 19.1 35.1
717s d 4.1 20.1 36.1
717s e 5.1 21.1 37.1
717s f 6.1 22.1 38.1
717s g 7.1 23.1 39.1
717s h 8.1 24.1 40.1
717s      [,1] [,2] [,3]
717s [1,]  1.1 17.1 33.1
717s [2,]  2.1 18.1 34.1
717s [3,]  3.1 19.1 35.1
717s [4,]  4.1 20.1 36.1
717s [5,]  5.1 21.1 37.1
717s [6,]  6.1 22.1 38.1
717s [7,]  7.1 23.1 39.1
717s [8,]  8.1 24.1 40.1
717s      [,1] [,2] [,3]
717s [1,]  1.1 17.1 33.1
717s [2,]  2.1 18.1 34.1
717s [3,]  3.1 19.1 35.1
717s [4,]  4.1 20.1 36.1
717s [5,]  5.1 21.1 37.1
717s [6,]  6.1 22.1 38.1
717s [7,]  7.1 23.1 39.1
717s [8,]  8.1 24.1 40.1
717s       0%  50% 100%
717s [1,] 1.1 17.1 33.1
717s [2,] 2.1 18.1 34.1
717s [3,] 3.1 19.1 35.1
717s [4,] 4.1 20.1 36.1
717s [5,] 5.1 21.1 37.1
717s [6,] 6.1 22.1 38.1
717s [7,] 7.1 23.1 39.1
717s [8,] 8.1 24.1 40.1
717s       0%  50% 100%
717s [1,] 1.1 17.1 33.1
717s [2,] 2.1 18.1 34.1
717s [3,] 3.1 19.1 35.1
717s [4,] 4.1 20.1 36.1
717s [5,] 5.1 21.1 37.1
717s [6,] 6.1 22.1 38.1
717s [7,] 7.1 23.1 39.1
717s [8,] 8.1 24.1 40.1
717s      [,1] [,2] [,3]
717s [1,]  1.1 17.1 33.1
717s [2,]  2.1 18.1 34.1
717s [3,]  3.1 19.1 35.1
717s [4,]  4.1 20.1 36.1
717s [5,]  5.1 21.1 37.1
717s [6,]  6.1 22.1 38.1
717s [7,]  7.1 23.1 39.1
717s [8,]  8.1 24.1 40.1
717s      [,1] [,2] [,3]
717s [1,]  1.1 17.1 33.1
717s [2,]  2.1 18.1 34.1
717s [3,]  3.1 19.1 35.1
717s [4,]  4.1 20.1 36.1
717s [5,]  5.1 21.1 37.1
717s [6,]  6.1 22.1 38.1
717s [7,]  7.1 23.1 39.1
717s [8,]  8.1 24.1 40.1
717s > 
717s > 
717s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
717s > # Test with a single quantile
717s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
717s > for (mode in c("logical", "integer", "double")) {
717s +   cat("mode: ", mode, "\n", sep = "")
717s +   x <- matrix(1:40, nrow = 8, ncol = 5)
717s +   storage.mode(x) <- mode
717s +   dimnames <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
717s +   str(x)
717s + 
717s +   probs <- c(0.5)
717s +   # Test with and without dimnames on x
717s +   for (setDimnames in c(TRUE, FALSE)) {
717s +     if (setDimnames) dimnames(x) <- dimnames
717s +     else dimnames(x) <- NULL    
717s +     # Check names attribute
717s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
717s +       q0 <- rowQuantiles_R(x, probs = probs, useNames = useNames)
717s +       print(q0)
717s +       q1 <- rowQuantiles(x, probs = probs, useNames = useNames)
717s +       ## FIXME: Workaround for R (< 3.0.0)
717s +       if (getRversion() < "3.0.0" && mode == "logical") storage.mode(q1) <- storage.mode(q0)
717s +       print(q1)
717s +       stopifnot(all.equal(q1, q0))
717s +       q2 <- colQuantiles(t(x), probs = probs, useNames = useNames)
717s +       ## FIXME: Workaround for R (< 3.0.0)
717s +       if (getRversion() < "3.0.0" && mode == "logical") storage.mode(q2) <- storage.mode(q0)
717s +       stopifnot(all.equal(q2, q0))      
717s +     }
717s +   }
717s + } # for (mode ...)
717s mode: logical
717s  logi [1:8, 1:5] TRUE TRUE TRUE TRUE TRUE TRUE ...
717s a b c d e f g h 
717s 1 1 1 1 1 1 1 1 
717s a b c d e f g h 
717s 1 1 1 1 1 1 1 1 
717s [1] 1 1 1 1 1 1 1 1
717s [1] 1 1 1 1 1 1 1 1
717s [1] 1 1 1 1 1 1 1 1
717s [1] 1 1 1 1 1 1 1 1
717s [1] 1 1 1 1 1 1 1 1
717s [1] 1 1 1 1 1 1 1 1
717s mode: integer
717s  int [1:8, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
717s  a  b  c  d  e  f  g  h 
717s 17 18 19 20 21 22 23 24 
717s  a  b  c  d  e  f  g  h 
717s 17 18 19 20 21 22 23 24 
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s mode: double
717s  num [1:8, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
717s  a  b  c  d  e  f  g  h 
717s 17 18 19 20 21 22 23 24 
717s  a  b  c  d  e  f  g  h 
717s 17 18 19 20 21 22 23 24 
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s [1] 17 18 19 20 21 22 23 24
717s > 
717s > 
717s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
717s > # Consistency checks
717s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
717s > set.seed(1)
717s > 
717s > probs <- seq(from = 0, to = 1, by = 0.25)
717s > 
717s > cat("Consistency checks:\n")
717s Consistency checks:
717s > n_sims <- if (Sys.getenv("_R_CHECK_USE_VALGRIND_") != "") 6L else 24L
717s > for (kk in seq_len(n_sims)) {
717s +   cat("Random test #", kk, "\n", sep = "")
717s + 
717s +   # Simulate data in a matrix of any shape
717s +   dim <- sample(20:60, size = 2L)
717s +   n <- prod(dim)
717s +   x <- rnorm(n, sd = 100)
717s +   dim(x) <- dim
717s +   dimnames <- lapply(dim(x), FUN = function(n) rep(letters, length.out = n))
717s + 
717s +   # Add NAs?
717s +   has_na <- ((kk %% 2) == 0L)
717s +   if (has_na) {
717s +     cat("Adding NAs\n")
717s +     nna <- sample(n, size = 1)
717s +     na_values <- c(NA_real_, NaN)
717s +     t <- sample(na_values, size = nna, replace = TRUE)
717s +     x[sample(length(x), size = nna)] <- t
717s +   }
717s + 
717s +   # Logical, integer, or double?
717s +   mode <- "numeric"
717s +   if ((kk %% 6) %in% 1:2) {
717s +     cat("Coercing to logical\n")
717s +     mode <- "logical"
717s +   } else if ((kk %% 6) %in% 3:4) {
717s +     cat("Coercing to integers\n")
717s +     mode <- "integer"
717s +   }
717s +   storage.mode(x) <- mode
717s +   
717s +   str(x)
717s + 
717s +   # rowQuantiles():
717s +   for (type in 1:9) {
717s +     cat(sprintf("type=%d, has_na=%s:\n", type, has_na))
717s +     # Test with and without dimnames on x
717s +     for (setDimnames in c(TRUE, FALSE)) {
717s +       if (setDimnames) dimnames(x) <- dimnames
717s +       else dimnames(x) <- NULL    
717s +       # Check names attribute
717s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
717s +         q0 <- rowQuantiles_R(x, probs = probs, na.rm = has_na, type = type, useNames = useNames)
717s +         q1 <- rowQuantiles(x, probs = probs, na.rm = has_na, type = type, useNames = useNames)
717s +         ## FIXME: Workaround for R (< 3.0.0)
717s +         if (getRversion() < "3.0.0" && mode == "logical" && !has_na && type == 7L) storage.mode(q1) <- storage.mode(q0)
717s +         stopifnot(all.equal(q1, q0))
717s +         q2 <- colQuantiles(t(x), probs = probs, na.rm = has_na, type = type, useNames = useNames)
717s +         ## FIXME: Workaround for R (< 3.0.0)
717s +         if (getRversion() < "3.0.0" && mode == "logical" && !has_na && type == 7L) storage.mode(q2) <- storage.mode(q0)
717s +         stopifnot(all.equal(q2, q0))
717s +       }
717s +     }
717s +   }
717s + } # for (kk ...)
717s Random test #1
717s Coercing to logical
717s  logi [1:23, 1:58] TRUE TRUE TRUE TRUE TRUE TRUE ...
717s type=1, has_na=FALSE:
717s type=2, has_na=FALSE:
717s type=3, has_na=FALSE:
717s type=4, has_na=FALSE:
717s type=5, has_na=FALSE:
717s type=6, has_na=FALSE:
717s type=7, has_na=FALSE:
717s type=8, has_na=FALSE:
717s type=9, has_na=FALSE:
718s Random test #2
718s Adding NAs
718s Coercing to logical
718s  logi [1:58, 1:33] TRUE TRUE TRUE TRUE TRUE NA ...
718s type=1, has_na=TRUE:
718s type=2, has_na=TRUE:
718s type=3, has_na=TRUE:
718s type=4, has_na=TRUE:
718s type=5, has_na=TRUE:
719s type=6, has_na=TRUE:
719s type=7, has_na=TRUE:
719s type=8, has_na=TRUE:
719s type=9, has_na=TRUE:
719s Random test #3
719s Coercing to integers
719s  int [1:28, 1:60] 119 -164 115 -129 209 -175 2 -32 120 -28 ...
719s type=1, has_na=FALSE:
719s type=2, has_na=FALSE:
719s type=3, has_na=FALSE:
720s type=4, has_na=FALSE:
720s type=5, has_na=FALSE:
720s type=6, has_na=FALSE:
720s type=7, has_na=FALSE:
720s type=8, has_na=FALSE:
720s type=9, has_na=FALSE:
720s Random test #4
720s Adding NAs
720s Coercing to integers
720s  int [1:54, 1:35] 147 11 116 -50 NA -69 132 NA 114 NA ...
720s type=1, has_na=TRUE:
720s type=2, has_na=TRUE:
721s type=3, has_na=TRUE:
721s type=4, has_na=TRUE:
721s type=5, has_na=TRUE:
721s type=6, has_na=TRUE:
721s type=7, has_na=TRUE:
721s type=8, has_na=TRUE:
722s type=9, has_na=TRUE:
722s Random test #5
722s  num [1:39, 1:53] 5.94 -27.16 -30.78 173 126.05 ...
722s type=1, has_na=FALSE:
722s type=2, has_na=FALSE:
722s type=3, has_na=FALSE:
722s type=4, has_na=FALSE:
722s type=5, has_na=FALSE:
722s type=6, has_na=FALSE:
723s type=7, has_na=FALSE:
723s type=8, has_na=FALSE:
723s type=9, has_na=FALSE:
723s Random test #6
723s Adding NAs
723s  num [1:46, 1:22] 197 -107 15 148 -110 ...
723s type=1, has_na=TRUE:
723s type=2, has_na=TRUE:
723s type=3, has_na=TRUE:
723s type=4, has_na=TRUE:
724s type=5, has_na=TRUE:
724s type=6, has_na=TRUE:
724s type=7, has_na=TRUE:
724s type=8, has_na=TRUE:
724s type=9, has_na=TRUE:
724s Random test #7
724s Coercing to logical
724s  logi [1:21, 1:51] TRUE TRUE TRUE TRUE TRUE TRUE ...
724s type=1, has_na=FALSE:
724s type=2, has_na=FALSE:
724s type=3, has_na=FALSE:
725s type=4, has_na=FALSE:
725s type=5, has_na=FALSE:
725s type=6, has_na=FALSE:
725s type=7, has_na=FALSE:
725s type=8, has_na=FALSE:
725s type=9, has_na=FALSE:
725s Random test #8
725s Adding NAs
725s Coercing to logical
725s  logi [1:33, 1:53] NA NA TRUE TRUE TRUE TRUE ...
725s type=1, has_na=TRUE:
725s type=2, has_na=TRUE:
725s type=3, has_na=TRUE:
725s type=4, has_na=TRUE:
725s type=5, has_na=TRUE:
726s type=6, has_na=TRUE:
726s type=7, has_na=TRUE:
726s type=8, has_na=TRUE:
726s type=9, has_na=TRUE:
726s Random test #9
726s Coercing to integers
726s  int [1:53, 1:24] -73 10 -73 -5 44 -107 -100 95 58 -50 ...
726s type=1, has_na=FALSE:
726s type=2, has_na=FALSE:
726s type=3, has_na=FALSE:
726s type=4, has_na=FALSE:
727s type=5, has_na=FALSE:
727s type=6, has_na=FALSE:
727s type=7, has_na=FALSE:
727s type=8, has_na=FALSE:
727s type=9, has_na=FALSE:
727s Random test #10
727s Adding NAs
727s Coercing to integers
727s  int [1:44, 1:20] NA -140 NA -57 -252 NA NA 20 NA NA ...
727s type=1, has_na=TRUE:
728s type=2, has_na=TRUE:
728s type=3, has_na=TRUE:
728s type=4, has_na=TRUE:
728s type=5, has_na=TRUE:
728s type=6, has_na=TRUE:
728s type=7, has_na=TRUE:
728s type=8, has_na=TRUE:
729s type=9, has_na=TRUE:
729s Random test #11
729s  num [1:54, 1:23] -160.87 74.13 196.08 7.27 4.92 ...
729s type=1, has_na=FALSE:
729s type=2, has_na=FALSE:
729s type=3, has_na=FALSE:
729s type=4, has_na=FALSE:
729s type=5, has_na=FALSE:
730s type=6, has_na=FALSE:
730s type=7, has_na=FALSE:
730s type=8, has_na=FALSE:
730s type=9, has_na=FALSE:
730s Random test #12
730s Adding NAs
730s  num [1:59, 1:27] -139.2 -86.3 NA -40.7 NA ...
730s type=1, has_na=TRUE:
730s type=2, has_na=TRUE:
731s type=3, has_na=TRUE:
731s type=4, has_na=TRUE:
731s type=5, has_na=TRUE:
731s type=6, has_na=TRUE:
731s type=7, has_na=TRUE:
732s type=8, has_na=TRUE:
732s type=9, has_na=TRUE:
732s Random test #13
732s Coercing to logical
732s  logi [1:53, 1:60] TRUE TRUE TRUE TRUE TRUE TRUE ...
732s type=1, has_na=FALSE:
732s type=2, has_na=FALSE:
732s type=3, has_na=FALSE:
733s type=4, has_na=FALSE:
733s type=5, has_na=FALSE:
733s type=6, has_na=FALSE:
733s type=7, has_na=FALSE:
733s type=8, has_na=FALSE:
733s type=9, has_na=FALSE:
733s Random test #14
733s Adding NAs
733s Coercing to logical
733s  logi [1:22, 1:57] TRUE TRUE TRUE TRUE TRUE TRUE ...
733s type=1, has_na=TRUE:
734s type=2, has_na=TRUE:
734s type=3, has_na=TRUE:
734s type=4, has_na=TRUE:
734s type=5, has_na=TRUE:
734s type=6, has_na=TRUE:
734s type=7, has_na=TRUE:
734s type=8, has_na=TRUE:
734s type=9, has_na=TRUE:
734s Random test #15
734s Coercing to integers
734s  int [1:20, 1:34] 78 -41 183 190 -71 37 0 -4 -86 27 ...
734s type=1, has_na=FALSE:
734s type=2, has_na=FALSE:
734s type=3, has_na=FALSE:
734s type=4, has_na=FALSE:
734s type=5, has_na=FALSE:
735s type=6, has_na=FALSE:
735s type=7, has_na=FALSE:
735s type=8, has_na=FALSE:
735s type=9, has_na=FALSE:
735s Random test #16
735s Adding NAs
735s Coercing to integers
735s  int [1:42, 1:37] NA 12 -15 41 -28 17 NA -74 NA NA ...
735s type=1, has_na=TRUE:
735s type=2, has_na=TRUE:
735s type=3, has_na=TRUE:
735s type=4, has_na=TRUE:
735s type=5, has_na=TRUE:
736s type=6, has_na=TRUE:
736s type=7, has_na=TRUE:
736s type=8, has_na=TRUE:
736s type=9, has_na=TRUE:
736s Random test #17
736s  num [1:42, 1:29] -50.51 -6.51 -117.59 135.58 226.87 ...
736s type=1, has_na=FALSE:
736s type=2, has_na=FALSE:
736s type=3, has_na=FALSE:
737s type=4, has_na=FALSE:
737s type=5, has_na=FALSE:
737s type=6, has_na=FALSE:
737s type=7, has_na=FALSE:
737s type=8, has_na=FALSE:
737s type=9, has_na=FALSE:
737s Random test #18
737s Adding NAs
737s  num [1:57, 1:39] 223 156.8 -44.6 -127.5 -147.7 ...
737s type=1, has_na=TRUE:
738s type=2, has_na=TRUE:
738s type=3, has_na=TRUE:
738s type=4, has_na=TRUE:
738s type=5, has_na=TRUE:
738s type=6, has_na=TRUE:
739s type=7, has_na=TRUE:
739s type=8, has_na=TRUE:
739s type=9, has_na=TRUE:
739s Random test #19
739s Coercing to logical
739s  logi [1:52, 1:57] TRUE TRUE TRUE TRUE TRUE TRUE ...
739s type=1, has_na=FALSE:
739s type=2, has_na=FALSE:
740s type=3, has_na=FALSE:
740s type=4, has_na=FALSE:
740s type=5, has_na=FALSE:
740s type=6, has_na=FALSE:
740s type=7, has_na=FALSE:
740s type=8, has_na=FALSE:
741s type=9, has_na=FALSE:
741s Random test #20
741s Adding NAs
741s Coercing to logical
741s  logi [1:25, 1:48] NA TRUE NA NA NA NA ...
741s type=1, has_na=TRUE:
741s type=2, has_na=TRUE:
741s type=3, has_na=TRUE:
741s type=4, has_na=TRUE:
741s type=5, has_na=TRUE:
741s type=6, has_na=TRUE:
741s type=7, has_na=TRUE:
741s type=8, has_na=TRUE:
742s type=9, has_na=TRUE:
742s Random test #21
742s Coercing to integers
742s  int [1:53, 1:27] 3 -30 203 -49 19 -45 -138 28 46 -44 ...
742s type=1, has_na=FALSE:
742s type=2, has_na=FALSE:
742s type=3, has_na=FALSE:
742s type=4, has_na=FALSE:
742s type=5, has_na=FALSE:
743s type=6, has_na=FALSE:
743s type=7, has_na=FALSE:
743s type=8, has_na=FALSE:
743s type=9, has_na=FALSE:
743s Random test #22
743s Adding NAs
743s Coercing to integers
743s  int [1:48, 1:36] -131 NA NA -201 45 -17 NA 57 NA NA ...
743s type=1, has_na=TRUE:
743s type=2, has_na=TRUE:
743s type=3, has_na=TRUE:
744s type=4, has_na=TRUE:
744s type=5, has_na=TRUE:
744s type=6, has_na=TRUE:
744s type=7, has_na=TRUE:
744s type=8, has_na=TRUE:
744s type=9, has_na=TRUE:
745s Random test #23
745s  num [1:23, 1:43] -99.2 -68.8 -86.7 -104.2 48 ...
745s type=1, has_na=FALSE:
745s type=2, has_na=FALSE:
745s type=3, has_na=FALSE:
745s type=4, has_na=FALSE:
745s type=5, has_na=FALSE:
745s type=6, has_na=FALSE:
745s type=7, has_na=FALSE:
745s type=8, has_na=FALSE:
745s type=9, has_na=FALSE:
745s Random test #24
745s Adding NAs
745s  num [1:53, 1:29] NaN -67.6 10.8 -88.4 130.1 ...
745s type=1, has_na=TRUE:
745s type=2, has_na=TRUE:
746s type=3, has_na=TRUE:
746s type=4, has_na=TRUE:
746s type=5, has_na=TRUE:
746s type=6, has_na=TRUE:
746s type=7, has_na=TRUE:
747s type=8, has_na=TRUE:
747s type=9, has_na=TRUE:
747s > 
747s > 
747s > 
747s > for (mode in c("logical", "integer", "double")) {
747s +   naValue <- NA_real_
747s +   storage.mode(naValue) <- mode
747s + 
747s +   someValue <- 1
747s +   storage.mode(someValue) <- mode
747s + 
747s +   for (type in 1:9) {
747s +     # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
747s +     # All NA
747s +     # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
747s +     x <- matrix(naValue, nrow = 3L, ncol = 4L)
747s +     dimnames <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
747s +     # Test with and without dimnames on x
747s +     for (setDimnames in c(TRUE, FALSE)) {
747s +       if (setDimnames) dimnames(x) <- dimnames
747s +       else dimnames(x) <- NULL    
747s +       # Check names attribute
747s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
747s +         qr0 <- rowQuantiles_R(x, type = type, useNames = useNames)
747s +         
747s +         qr <- rowQuantiles(x, type = type, useNames = useNames)
747s +         stopifnot(identical(qr, qr0))
747s +         
747s +         # x <- matrix(naValue, nrow = 4L, ncol = 3L)
747s +         qc <- colQuantiles(t(x), type = type, useNames = useNames)
747s +         
747s +         stopifnot(identical(qc, qr))
747s +       }
747s +     }
747s + 
747s + 
747s +     # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
747s +     # Empty matrices
747s +     # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
747s +     probs <- c(0, 0.25, 0.75, 1)
747s +     x <- matrix(naValue, nrow = 0L, ncol = 0L)
747s +     dimnames(x) <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
747s +     q <- rowQuantiles(x, probs = probs, type = type, useNames = TRUE)
747s +     stopifnot(identical(dim(q), c(nrow(x), length(probs))))
747s +     q <- colQuantiles(x, probs = probs, type = type, useNames = TRUE)
747s +     stopifnot(identical(dim(q), c(ncol(x), length(probs))))
747s +     
747s +     x <- matrix(naValue, nrow = 2L, ncol = 0L)
747s +     dimnames(x) <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
747s +     q <- rowQuantiles(x, probs = probs, type = type, useNames = TRUE)
747s +     stopifnot(identical(dim(q), c(nrow(x), length(probs))))
747s +     
747s +     x <- matrix(naValue, nrow = 0L, ncol = 2L)
747s +     dimnames(x) <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
747s +     q <- colQuantiles(x, probs = probs, type = type, useNames = TRUE)
747s +     stopifnot(identical(dim(q), c(ncol(x), length(probs))))
747s + 
747s + 
747s +     # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
747s +     # Single column matrices
747s +     # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
747s +     probs <- c(0, 0.25, 0.75, 1)
747s +     x <- matrix(someValue, nrow = 2L, ncol = 1L)
747s +     dimnames(x) <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
747s +     qr <- rowQuantiles(x, probs = probs, type = type, useNames = TRUE)
747s +     print(qr)
747s +     
747s +     x <- matrix(someValue, nrow = 1L, ncol = 2L)
747s +     dimnames(x) <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
747s +     qc <- colQuantiles(x, probs = probs, type = type, useNames = TRUE)
747s +     print(qc)
747s +     
747s +     stopifnot(identical(qc, qr))
747s +   }
747s + }
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s   0% 25% 75% 100%
747s a  1   1   1    1
747s b  1   1   1    1
747s > 
747s 
747s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
747s Copyright (C) 2024 The R Foundation for Statistical Computing
747s Platform: arm-unknown-linux-gnueabihf (32-bit)
747s 
747s R is free software and comes with ABSOLUTELY NO WARRANTY.
747s You are welcome to redistribute it under certain conditions.
747s Type 'license()' or 'licence()' for distribution details.
747s 
747s R is a collaborative project with many contributors.
747s Type 'contributors()' for more information and
747s 'citation()' on how to cite R or R packages in publications.
747s 
747s Type 'demo()' for some demos, 'help()' for on-line help, or
747s 'help.start()' for an HTML browser interface to help.
747s Type 'q()' to quit R.
747s 
748s > library("matrixStats")
748s > 
748s > ## Create isFALSE() if running on an old version of R
748s > if (!exists("isFALSE", mode="function")) {
748s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
748s + }
748s > 
748s > rowQuantiles_R <- function(x, probs, na.rm = FALSE, drop = TRUE, ..., useNames = NA) {
748s +   q <- apply(x, MARGIN = 1L, FUN = function(x, probs, na.rm) {
748s +     if (!na.rm && any(is.na(x))) {
748s +       na_value <- NA_real_
748s +       storage.mode(na_value) <- storage.mode(x)
748s +       rep(na_value, times = length(probs))
748s + 
748s +     } else {
748s +       as.vector(quantile(x, probs = probs, na.rm = na.rm, names = FALSE, ...))
748s +     }
748s +   }, probs = probs, na.rm = na.rm)
748s + 
748s +   if (!is.null(dim(q))) q <- t(q)
748s +   else dim(q) <- c(nrow(x), length(probs))
748s + 
748s +   colnames(q) <- matrixStats:::quantile_probs_names(probs)
748s +   rownames(q) <- rownames(x)
748s +   if (isFALSE(useNames)) dimnames(q) <- NULL
748s + 
748s +   if (drop) q <- drop(q)
748s +   q
748s + }
748s > 
748s > 
748s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
748s > # Subsetted tests
748s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
748s > source("utils/validateIndicesFramework.R")
748s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
748s > dimnames <- lapply(dim(x), FUN = function(n) letters[seq_len(n)])
748s > probs <- c(0, 0.25, 0.75, 1)
748s > # Test with and without dimnames on x
748s > for (setDimnames in c(TRUE, FALSE)) {
748s +   if (setDimnames) dimnames(x) <- dimnames
748s +   else dimnames(x) <- NULL
748s +   
748s +   count <- 0L
748s +   for (rows in index_cases) {
748s +     for (cols in index_cases) {
748s +       count <- count + 1L
748s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
748s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
748s +       useNames <- useNames[count %% length(useNames) + 1]
748s + 
748s +       validateIndicesTestMatrix(x, rows, cols,
748s +                                 ftest = rowQuantiles, fsure = rowQuantiles_R,
748s +                                 probs = probs, na.rm = na.rm, drop = FALSE, useNames = useNames)
748s +       validateIndicesTestMatrix(x, rows, cols,
748s +                                 fcoltest = colQuantiles, fsure = rowQuantiles_R,
748s +                                 probs = probs, na.rm = na.rm, drop = FALSE, useNames = useNames)
748s +     }
748s +   }
748s + }
751s > 
751s > 
751s 
751s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
751s Copyright (C) 2024 The R Foundation for Statistical Computing
751s Platform: arm-unknown-linux-gnueabihf (32-bit)
751s 
751s R is free software and comes with ABSOLUTELY NO WARRANTY.
751s You are welcome to redistribute it under certain conditions.
751s Type 'license()' or 'licence()' for distribution details.
751s 
751s R is a collaborative project with many contributors.
751s Type 'contributors()' for more information and
751s 'citation()' on how to cite R or R packages in publications.
751s 
751s Type 'demo()' for some demos, 'help()' for on-line help, or
751s 'help.start()' for an HTML browser interface to help.
751s Type 'q()' to quit R.
751s 
751s > library("matrixStats")
751s > 
751s > rowMins_R <- function(x, ..., useNames = NA) {
751s +   suppressWarnings({
751s +     res <- apply(x, MARGIN = 1L, FUN = min, ...)
751s +   })
751s +   if (is.na(useNames) || !useNames) names(res) <- NULL
751s +   res
751s + } # rowMins_R()
751s > 
751s > rowMaxs_R <- function(x, ..., useNames = NA) {
751s +   suppressWarnings({
751s +     res <- apply(x, MARGIN = 1L, FUN = max, ...)
751s +   })
751s +   if (is.na(useNames) || !useNames) names(res) <- NULL
751s +   res
751s + } # rowMaxs_R()
751s > 
751s > rowRanges_R <- function(x, ..., useNames = NA) {
751s +   suppressWarnings({
751s +     ans <- t(apply(x, MARGIN = 1L, FUN = range, ...))
751s +   })
751s +   
751s +   # Preserve rownames attribute
751s +   dim <- c(dim(x)[1], 2L)
751s +   if (!isTRUE(all.equal(dim(ans), dim))) {
751s +     dim(ans) <- dim
751s +     rownames <- rownames(x)
751s +     if (!is.null(dimnames)) rownames(ans) <- rownames
751s +   }
751s +   if (is.na(useNames) || !useNames) dimnames(ans) <- NULL
751s +   ans
751s + } # rowRanges_R()
751s > 
751s > 
751s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
751s > # With and without some NAs
751s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
751s > for (mode in c("integer", "double")) {
751s +   cat("mode: ", mode, "\n", sep = "")
751s + 
751s +   for (add_na in c(FALSE, TRUE)) {
751s +     cat("add_na = ", add_na, "\n", sep = "")
751s + 
751s +     x <- matrix(1:50 + 0.1, nrow = 10L, ncol = 5L)
751s +     if (add_na) {
751s +       x[3:7, c(2, 4)] <- NA_real_
751s +     }
751s +     storage.mode(x) <- mode
751s +     str(x)
751s +     
751s +     # To check names attribute
751s +     dimnames <- list(letters[1:10], LETTERS[1:5])
751s +     
751s +     # Test with and without dimnames on x
751s +     for (setDimnames in c(TRUE, FALSE)) {
751s +       if (setDimnames) dimnames(x) <- dimnames
751s +       else dimnames(x) <- NULL
751s +       # Row/column extremes
751s +       for (na.rm in c(FALSE, TRUE)) {
751s +         # Check names attribute
751s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
751s +           cat("na.rm = ", na.rm, "\n", sep = "")
751s +           
751s +           # Ranges
751s +           cat("range:\n")
751s +           r0 <- rowRanges_R(x, na.rm = na.rm, useNames = useNames)
751s +           r1 <- rowRanges(x, na.rm = na.rm, useNames = useNames)
751s +           r2 <- colRanges(t(x), na.rm = na.rm, useNames = useNames)
751s +           stopifnot(all.equal(r1, r2))
751s +           stopifnot(all.equal(r1, r0))
751s +           
751s +           # Min
751s +           cat("min:\n")
751s +           m0 <- rowMins_R(x, na.rm = na.rm, useNames = useNames)
751s +           m1 <- rowMins(x, na.rm = na.rm, useNames = useNames)
751s +           m2 <- colMins(t(x), na.rm = na.rm, useNames = useNames)
751s +           stopifnot(all.equal(m1, m2))
751s +           stopifnot(all.equal(m1, m0))
751s +           
751s +           # Max
751s +           cat("max:\n")
751s +           m0 <- rowMaxs_R(x, na.rm = na.rm, useNames = useNames)
751s +           m1 <- rowMaxs(x, na.rm = na.rm, useNames = useNames)
751s +           m2 <- colMaxs(t(x), na.rm = na.rm, useNames = useNames)
751s +           stopifnot(all.equal(m1, m2))
751s +           stopifnot(all.equal(m1, m0))
751s +         }
751s +       }
751s +     }
751s +   } # for (add_na ...)
751s + } # for (mode ...)
751s mode: integer
751s add_na = FALSE
751s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s add_na = TRUE
751s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s mode: double
751s add_na = FALSE
751s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s add_na = TRUE
751s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = FALSE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
751s min:
751s max:
751s na.rm = TRUE
751s range:
752s min:
752s max:
752s na.rm = FALSE
752s range:
752s min:
752s max:
752s na.rm = FALSE
752s range:
752s min:
752s max:
752s na.rm = TRUE
752s range:
752s min:
752s max:
752s na.rm = TRUE
752s range:
752s min:
752s max:
752s > 
752s > 
752s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
752s > # All NAs
752s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
752s > for (mode in c("integer", "double")) {
752s +   cat("mode: ", mode, "\n", sep = "")
752s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
752s +   storage.mode(x) <- mode
752s +   str(x)
752s +   
752s +   # Test with and without dimnames on x
752s +   for (setDimnames in c(TRUE, FALSE)) {
752s +     if (setDimnames) dimnames(x) <- dimnames
752s +     else dimnames(x) <- NULL
752s +     for (na.rm in c(FALSE, TRUE)) {
752s +       # Check names attribute
752s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
752s +         cat("na.rm = ", na.rm, "\n", sep = "")
752s +         r0 <- rowRanges_R(x, na.rm = na.rm, useNames = useNames)
752s +         r1 <- rowRanges(x, na.rm = na.rm, useNames = useNames)
752s +         r2 <- colRanges(t(x), na.rm = na.rm, useNames = useNames)
752s +         stopifnot(all.equal(r1, r2))
752s +         stopifnot(all.equal(r1, r0))
752s +       }
752s +     }
752s +   }
752s + } # for (mode ...)
752s mode: integer
752s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
752s na.rm = FALSE
752s na.rm = FALSE
752s na.rm = TRUE
752s na.rm = TRUE
752s na.rm = FALSE
752s na.rm = FALSE
752s na.rm = TRUE
752s na.rm = TRUE
752s mode: double
752s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
752s na.rm = FALSE
752s na.rm = FALSE
752s na.rm = TRUE
752s na.rm = TRUE
752s na.rm = FALSE
752s na.rm = FALSE
752s na.rm = TRUE
752s na.rm = TRUE
752s > 
752s > 
752s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
752s > # Special cases
752s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
752s > # Nx0 matrix
752s > x <- matrix(double(0L), nrow = 5L, ncol = 0L)
752s > r0 <- rowRanges_R(x)
752s > #r1 <- rowRanges(x)
752s > #r_truth <- matrix(c(Inf, -Inf), nrow = nrow(x), ncol = 2L, byrow = TRUE)
752s > #stopifnot(all.equal(r1, r_truth))
752s > 
752s > # 0xN matrix
752s > x <- t(x)
752s > #r1 <- colRanges(x)
752s > #stopifnot(all.equal(r1, r_truth))
752s > 
752s > # Nx1 matrix
752s > x <- matrix(1:5, nrow = 5L, ncol = 1L)
752s > # To check names attribute
752s > dimnames <- list(letters[1:5], "A")
752s > r1 <- rowRanges(x)
752s > r_truth <- matrix(1:5, nrow = nrow(x), ncol = 2L, byrow = FALSE)
752s > stopifnot(all.equal(r1, r_truth))
752s > # Check names attribute
752s > dimnames(x) <- dimnames
752s > r0 <- rowRanges_R(x, useNames = TRUE)
752s > r1 <- rowRanges(x, useNames = TRUE)
752s > stopifnot(all.equal(r1, r0))
752s > dimnames(x) <- NULL
752s > 
752s > # 1xN matrix
752s > x <- t(x)
752s > r1 <- colRanges(x)
752s > stopifnot(all.equal(r1, r_truth))
752s > # Check names attribute
752s > dimnames(x) <- list("a", LETTERS[1:5])
752s > r1 <- colRanges(x, useNames = TRUE)
752s > stopifnot(identical(rownames(r1), colnames(x)))
752s > 
752s > 
752s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
752s > # Additional tests with NA_integer_, NA_real, NaN, -Inf, +Inf
752s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
752s > x <- matrix(1:12, nrow = 4L, ncol = 3L)
752s > 
752s > na_list <- list(
752s +   "integer"       = matrix(1:12, nrow = 4L, ncol = 3L),
752s +   "integer w/ NA" = matrix(NA_integer_, nrow = 4L, ncol = 3L),
752s +   "real"          = matrix(as.double(1:12), nrow = 4L, ncol = 3L),
752s +   "real w/ NA"    = matrix(NA_real_, nrow = 4L, ncol = 3L)
752s + )
752s > 
752s > na <- na_list[["real"]]
752s > na[2, 2] <- NA
752s > na_list[["real + NA cell"]] <- na
752s > 
752s > na <- na_list[["real"]]
752s > na[2, ] <- NA
752s > na_list[["real + NA row"]] <- na
752s > 
752s > na <- na_list[["real"]]
752s > na[2, ] <- NaN
752s > na_list[["real + NaN row"]] <- na
752s > 
752s > na <- na_list[["real"]]
752s > na[2, 2] <- Inf
752s > na_list[["real + Inf cell"]] <- na
752s > 
752s > na <- na_list[["real"]]
752s > na[2, ] <- Inf
752s > na_list[["real + Inf row"]] <- na
752s > 
752s > na <- na_list[["real"]]
752s > na[2, 2] <- NaN
752s > na_list[["real + NaN cell"]] <- na
752s > 
752s > na <- na_list[["real w/ NA"]]
752s > na[2, 2] <- NaN
752s > na_list[["real w/ NA + NaN cell"]] <- na
752s > 
752s > na <- na_list[["real w/ NA"]]
752s > na[2, ] <- NaN
752s > na_list[["real w/ NA + NaN row"]] <- na
752s > 
752s > # To check names attribute
752s > dimnames <- list(letters[1:4], LETTERS[1:3])
752s > 
752s > # Test with and without dimnames on x
752s > for (setDimnames in c(TRUE, FALSE)) {
752s +   if (setDimnames) dimnames(x) <- dimnames
752s +   else dimnames(x) <- NULL
752s +   for (na.rm in c(FALSE, TRUE)) {
752s +     for (name in names(na_list)) {
752s +       # Check names attribute
752s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
752s +         na <- na_list[[name]]
752s +         cat(sprintf("%s (%s) w/ na.rm = %s:\n", name, typeof(na), na.rm))
752s +         print(na)
752s +         
752s +         cat("  min:\n")
752s +         y0 <- rowMins_R(na, na.rm = na.rm, useNames = useNames)
752s +         str(y0)
752s +         y1 <- rowMins(na, na.rm = na.rm, useNames = useNames)
752s +         str(y1)
752s +         stopifnot(all.equal(y1, y0))
752s +         y1c <- colMins(t(na), na.rm = na.rm, useNames = useNames)
752s +         str(y1c)
752s +         stopifnot(all.equal(y1c, y1))
752s +         
752s +         cat("  max:\n")
752s +         y0 <- rowMaxs_R(na, na.rm = na.rm, useNames = useNames)
752s +         str(y0)
752s +         y1 <- rowMaxs(na, na.rm = na.rm, useNames = useNames)
752s +         str(y1)
752s +         stopifnot(all.equal(y1, y0))
752s +         y1c <- colMaxs(t(na), na.rm = na.rm, useNames = useNames)
752s +         str(y1c)
752s +         stopifnot(all.equal(y1c, y1))
752s +         
752s +         cat("  range:\n")
752s +         y0 <- rowRanges_R(na, na.rm = na.rm, useNames = useNames)
752s +         str(y0)
752s +         y1 <- rowRanges(na, na.rm = na.rm, useNames = useNames)
752s +         str(y1)
752s +         stopifnot(all.equal(y1, y0))
752s +         y1c <- colRanges(t(na), na.rm = na.rm, useNames = useNames)
752s +         str(y1c)
752s +         stopifnot(all.equal(y1c, y1))
752s +       }
752s +     } # for (name ...)
752s +   } # for (na.rm ...)
752s + }
752s integer (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer w/ NA (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   max:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   range:
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s integer w/ NA (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   max:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   range:
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real w/ NA (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real w/ NA (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real + NA cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NA cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NA row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NA row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real + Inf cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  Inf   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s real + Inf cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  Inf   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s real + Inf row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  Inf  Inf  Inf
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + Inf row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  Inf  Inf  Inf
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  NaN   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  NaN   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real w/ NA + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA  NaN   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real w/ NA + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA  NaN   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real w/ NA + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]  NaN  NaN  NaN
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   max:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   range:
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s real w/ NA + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]  NaN  NaN  NaN
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   max:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   range:
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s integer (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer w/ NA (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s integer w/ NA (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real w/ NA (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real w/ NA (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real + NA cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real + NA cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real + NA row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NA row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NaN row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NaN row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + Inf cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  Inf   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s real + Inf cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  Inf   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s real + Inf row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  Inf  Inf  Inf
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + Inf row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  Inf  Inf  Inf
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NaN cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  NaN   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real + NaN cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  NaN   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real w/ NA + NaN cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA  NaN   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real w/ NA + NaN cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA  NaN   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real w/ NA + NaN row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]  NaN  NaN  NaN
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real w/ NA + NaN row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]  NaN  NaN  NaN
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s integer (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer w/ NA (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   max:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   range:
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s integer w/ NA (integer) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   max:
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s  int [1:4] NA NA NA NA
752s   range:
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  int [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real w/ NA (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real w/ NA (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real + NA cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NA cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NA row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NA row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s  num [1:4] 1 NA 3 4
752s   max:
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s  num [1:4] 9 NA 11 12
752s   range:
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s  num [1:4, 1:2] 1 NA 3 4 9 NA 11 12
752s real + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real + Inf cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  Inf   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s real + Inf cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  Inf   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s  num [1:4, 1:2] 1 2 3 4 9 ...
752s real + Inf row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  Inf  Inf  Inf
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + Inf row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  Inf  Inf  Inf
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s  num [1:4] 9 Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  NaN   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2  NaN   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s  num [1:4] 1 NaN 3 4
752s   max:
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s  num [1:4] 9 NaN 11 12
752s   range:
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s  num [1:4, 1:2] 1 NaN 3 4 9 NaN 11 12
752s real w/ NA + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA  NaN   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real w/ NA + NaN cell (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA  NaN   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   max:
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s  num [1:4] NA NA NA NA
752s   range:
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s  num [1:4, 1:2] NA NA NA NA NA NA NA NA
752s real w/ NA + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]  NaN  NaN  NaN
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   max:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   range:
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s real w/ NA + NaN row (double) w/ na.rm = FALSE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]  NaN  NaN  NaN
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   max:
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s  num [1:4] NA NaN NA NA
752s   range:
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s  num [1:4, 1:2] NA NaN NA NA NA NaN NA NA
752s integer (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s  int [1:4] 1 2 3 4
752s   max:
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s  int [1:4] 9 10 11 12
752s   range:
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  int [1:4, 1:2] 1 2 3 4 9 10 11 12
752s integer w/ NA (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s integer w/ NA (integer) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2    6   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real w/ NA (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real w/ NA (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]   NA   NA   NA
752s [2,]   NA   NA   NA
752s [3,]   NA   NA   NA
752s [4,]   NA   NA   NA
752s   min:
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s  num [1:4] Inf Inf Inf Inf
752s   max:
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s  num [1:4] -Inf -Inf -Inf -Inf
752s   range:
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
752s real + NA cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real + NA cell (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]    2   NA   10
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s  num [1:4] 1 2 3 4
752s   max:
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s  num [1:4] 9 10 11 12
752s   range:
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
752s real + NA row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NA row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]   NA   NA   NA
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s  num [1:4] 9 -Inf 11 12
752s   range:
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s  num [1:4, 1:2] 1 Inf 3 4 9 ...
752s real + NaN row (double) w/ na.rm = TRUE:
752s      [,1] [,2] [,3]
752s [1,]    1    5    9
752s [2,]  NaN  NaN  NaN
752s [3,]    3    7   11
752s [4,]    4    8   12
752s   min:
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s  num [1:4] 1 Inf 3 4
752s   max:
753s  num [1:4] 9 -Inf 11 12
753s  num [1:4] 9 -Inf 11 12
753s  num [1:4] 9 -Inf 11 12
753s   range:
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s real + NaN row (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]  NaN  NaN  NaN
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 Inf 3 4
753s  num [1:4] 1 Inf 3 4
753s  num [1:4] 1 Inf 3 4
753s   max:
753s  num [1:4] 9 -Inf 11 12
753s  num [1:4] 9 -Inf 11 12
753s  num [1:4] 9 -Inf 11 12
753s   range:
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s real + Inf cell (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]    2  Inf   10
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s   max:
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s   range:
753s  num [1:4, 1:2] 1 2 3 4 9 ...
753s  num [1:4, 1:2] 1 2 3 4 9 ...
753s  num [1:4, 1:2] 1 2 3 4 9 ...
753s real + Inf cell (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]    2  Inf   10
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s   max:
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s   range:
753s  num [1:4, 1:2] 1 2 3 4 9 ...
753s  num [1:4, 1:2] 1 2 3 4 9 ...
753s  num [1:4, 1:2] 1 2 3 4 9 ...
753s real + Inf row (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]  Inf  Inf  Inf
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 Inf 3 4
753s  num [1:4] 1 Inf 3 4
753s  num [1:4] 1 Inf 3 4
753s   max:
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s   range:
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s real + Inf row (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]  Inf  Inf  Inf
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 Inf 3 4
753s  num [1:4] 1 Inf 3 4
753s  num [1:4] 1 Inf 3 4
753s   max:
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s  num [1:4] 9 Inf 11 12
753s   range:
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s  num [1:4, 1:2] 1 Inf 3 4 9 ...
753s real + NaN cell (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]    2  NaN   10
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s   max:
753s  num [1:4] 9 10 11 12
753s  num [1:4] 9 10 11 12
753s  num [1:4] 9 10 11 12
753s   range:
753s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
753s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
753s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
753s real + NaN cell (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]    1    5    9
753s [2,]    2  NaN   10
753s [3,]    3    7   11
753s [4,]    4    8   12
753s   min:
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s  num [1:4] 1 2 3 4
753s   max:
753s  num [1:4] 9 10 11 12
753s  num [1:4] 9 10 11 12
753s  num [1:4] 9 10 11 12
753s   range:
753s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
753s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
753s  num [1:4, 1:2] 1 2 3 4 9 10 11 12
753s real w/ NA + NaN cell (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]   NA   NA   NA
753s [2,]   NA  NaN   NA
753s [3,]   NA   NA   NA
753s [4,]   NA   NA   NA
753s   min:
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s   max:
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s   range:
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s real w/ NA + NaN cell (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]   NA   NA   NA
753s [2,]   NA  NaN   NA
753s [3,]   NA   NA   NA
753s [4,]   NA   NA   NA
753s   min:
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s   max:
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s   range:
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s real w/ NA + NaN row (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]   NA   NA   NA
753s [2,]  NaN  NaN  NaN
753s [3,]   NA   NA   NA
753s [4,]   NA   NA   NA
753s   min:
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s   max:
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s   range:
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s real w/ NA + NaN row (double) w/ na.rm = TRUE:
753s      [,1] [,2] [,3]
753s [1,]   NA   NA   NA
753s [2,]  NaN  NaN  NaN
753s [3,]   NA   NA   NA
753s [4,]   NA   NA   NA
753s   min:
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s  num [1:4] Inf Inf Inf Inf
753s   max:
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s  num [1:4] -Inf -Inf -Inf -Inf
753s   range:
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s  num [1:4, 1:2] Inf Inf Inf Inf -Inf ...
753s > 
753s 
753s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
753s Copyright (C) 2024 The R Foundation for Statistical Computing
753s Platform: arm-unknown-linux-gnueabihf (32-bit)
753s 
753s R is free software and comes with ABSOLUTELY NO WARRANTY.
753s You are welcome to redistribute it under certain conditions.
753s Type 'license()' or 'licence()' for distribution details.
753s 
753s R is a collaborative project with many contributors.
753s Type 'contributors()' for more information and
753s 'citation()' on how to cite R or R packages in publications.
753s 
753s Type 'demo()' for some demos, 'help()' for on-line help, or
753s 'help.start()' for an HTML browser interface to help.
753s Type 'q()' to quit R.
753s 
766s > library("matrixStats")
766s > 
766s > rowMins_R <- function(x, ..., useNames = NA) {
766s +   suppressWarnings({
766s +     res <- apply(x, MARGIN = 1L, FUN = min, ...)
766s +   })
766s +   if (is.na(useNames) || !useNames) names(res) <- NULL
766s +   res
766s + } # rowMins_R()
766s > 
766s > rowMaxs_R <- function(x, ..., useNames = NA) {
766s +   suppressWarnings({
766s +     res <- apply(x, MARGIN = 1L, FUN = max, ...)
766s +   })
766s +   if (is.na(useNames) || !useNames) names(res) <- NULL
766s +   res
766s + } # rowMaxs_R()
766s > 
766s > rowRanges_R <- function(x, ..., useNames = NA) {
766s +   suppressWarnings({
766s +     ans <- t(apply(x, MARGIN = 1L, FUN = range, ...))
766s +   })
766s + 
766s +   # Preserve rownames attribute
766s +   dim <- c(dim(x)[1], 2L)
766s +   if (!isTRUE(all.equal(dim(ans), dim))) {
766s +     dim(ans) <- dim
766s +     rownames <- rownames(x)
766s +     if (!is.null(dimnames)) rownames(ans) <- rownames
766s +   }
766s +   if (is.na(useNames) || !useNames) dimnames(ans) <- NULL
766s +   ans
766s + } # rowRanges_R()
766s > 
766s > 
766s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
766s > # Subsetted tests
766s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
766s > source("utils/validateIndicesFramework.R")
766s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
766s > storage.mode(x) <- "integer"
766s > 
766s > # To check rownames/names attributes
766s > dimnames <- list(letters[1:6], LETTERS[1:6])
766s > 
766s > # Test with and without dimnames on x
766s > for (setDimnames in c(TRUE, FALSE)) {
766s +   if (setDimnames) dimnames(x) <- dimnames
766s +   else dimnames(x) <- NULL
766s +   
766s +   count <- 0L
766s +   for (rows in index_cases) {
766s +     for (cols in index_cases) {
766s +       count <- count + 1L
766s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
766s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
766s +       useNames <- useNames[count %% length(useNames) + 1]
766s + 
766s +       validateIndicesTestMatrix(x, rows, cols,
766s +                                 ftest = rowRanges, fsure = rowRanges_R,
766s +                                 na.rm = na.rm, useNames = useNames)
766s +       validateIndicesTestMatrix(x, rows, cols,
766s +                                 ftest = rowMins, fsure = rowMins_R,
766s +                                 na.rm = na.rm, useNames = useNames)
766s +       validateIndicesTestMatrix(x, rows, cols,
766s +                                 ftest = rowMaxs, fsure = rowMaxs_R,
766s +                                 na.rm = na.rm, useNames = useNames)
766s + 
766s +       validateIndicesTestMatrix(x, rows, cols,
766s +                                 fcoltest = colRanges, fsure = rowRanges_R,
766s +                                 na.rm = na.rm, useNames = useNames)
766s +       validateIndicesTestMatrix(x, rows, cols,
766s +                                 fcoltest = colMins, fsure = rowMins_R,
766s +                                 na.rm = na.rm, useNames = useNames)
766s +       validateIndicesTestMatrix(x, rows, cols,
766s +                                 fcoltest = colMaxs, fsure = rowMaxs_R,
766s +                                 na.rm = na.rm, useNames = useNames)
766s +     }
766s +   }
766s + }
769s > 
770s 
770s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
770s Copyright (C) 2024 The R Foundation for Statistical Computing
770s Platform: arm-unknown-linux-gnueabihf (32-bit)
770s 
770s R is free software and comes with ABSOLUTELY NO WARRANTY.
770s You are welcome to redistribute it under certain conditions.
770s Type 'license()' or 'licence()' for distribution details.
770s 
770s R is a collaborative project with many contributors.
770s Type 'contributors()' for more information and
770s 'citation()' on how to cite R or R packages in publications.
770s 
770s Type 'demo()' for some demos, 'help()' for on-line help, or
770s 'help.start()' for an HTML browser interface to help.
770s Type 'q()' to quit R.
770s 
770s > library("matrixStats")
770s > 
770s > dense_rank <- function(x) match(x, table = sort(unique(x)))
770s > 
770s > rowRanks_R <- function(x, ties.method, ..., useNames = NA) {
770s +   if (ties.method == "dense") {
770s +     res <- t(apply(x, MARGIN = 1L, FUN = dense_rank))
770s +   } else {
770s +     res <- t(apply(x, MARGIN = 1L, FUN = rank, na.last = "keep", ties.method = ties.method))
770s +   }
770s +   
770s +   # Preserve dimnames attribute?
770s +   dim(res) <- dim(x)
770s +   dimnames(res) <- if (isTRUE(useNames)) dimnames(x) else NULL
770s +   
770s +   res
770s + }
770s > 
770s > colRanks_R <- function(x, ties.method, preserveShape = FALSE, ..., useNames = NA) {
770s +   if (ties.method == "dense") {
770s +     res <- t(apply(x, MARGIN = 2L, FUN = dense_rank))
770s +   } else {
770s +     res <- t(apply(x, MARGIN = 2L, FUN = rank, na.last = "keep", ties.method = ties.method))
770s +   }
770s +   
770s +   # Preserve dimnames attribute?
770s +   tx <- t(x)
770s +   dim(res) <- dim(tx)
770s +   dimnames(res) <- if (isTRUE(useNames)) dimnames(tx) else NULL
770s +   
770s +   if (preserveShape) res <- t(res)
770s +   res
770s + }
770s > 
770s > set.seed(1)
770s > 
770s > cat("Consistency checks:\n")
770s Consistency checks:
770s > xs <- vector("list", length = 4L)
770s > for (kk in 1:4) {
770s +   
770s +   # Simulate data in a matrix of any shape
770s +   dim <- sample(40:80, size = 2L)
770s +   n <- prod(dim)
770s +   x <- rnorm(n, sd = 10)
770s +   dim(x) <- dim
770s +   
770s +   # Add NAs?
770s +   if ((kk %% 4) %in% c(3, 0)) {
770s +     cat("Adding NAs\n")
770s +     nna <- sample(n, size = 1L)
770s +     x[sample(length(x), size = nna)] <- NA_real_
770s +   }
770s +   
770s +   # Integer or double?
770s +   if ((kk %% 4) %in% c(2, 0)) {
770s +     cat("Coercing to integers\n")
770s +     storage.mode(x) <- "integer"
770s +   }
770s + 
770s +   xs[[kk]] <- x
770s + } # for (kk ...)
770s Coercing to integers
770s Adding NAs
770s Adding NAs
770s Coercing to integers
770s > str(xs)
770s List of 4
770s  $ : num [1:43, 1:78] 13.3 12.72 4.15 -15.4 -9.29 ...
770s  $ : int [1:46, 1:61] 2 11 -16 -5 19 5 26 -13 1 -9 ...
770s  $ : num [1:42, 1:47] NA -22.3 NA NA NA ...
770s  $ : int [1:42, 1:78] NA NA NA NA NA NA NA NA NA NA ...
770s > 
770s > for (kk in 1:4) {
770s +   cat("Random test #", kk, "\n", sep = "")
770s +   x <- xs[[kk]]
770s +   tx <- t(x)
770s +   
770s +   for (ties in c("max", "min", "average", "first", "last", "dense")) {
770s +     cat(sprintf("ties.method = %s\n", ties))
770s +     # rowRanks():
770s +     y1 <- matrixStats::rowRanks(x, ties.method = ties)
770s +     if (ties != "last" || getRversion() >= "3.3.0") {
770s +       y2 <- rowRanks_R(x, ties.method = ties)
770s +       stopifnot(identical(y1, y2))
770s +     }
770s +     
770s +     y3 <- matrixStats::colRanks(tx, ties.method = ties)
770s +     stopifnot(identical(y1, y3))
770s +     
770s +     # colRanks():
770s +     y1 <- matrixStats::colRanks(x, ties.method = ties)
770s +     if (ties != "last" || getRversion() >= "3.3.0") {
770s +       y2 <- colRanks_R(x, ties.method = ties)
770s +       stopifnot(identical(y1, y2))
770s +     }
770s +     
770s +     y3 <- matrixStats::rowRanks(tx, ties.method = ties)
770s +     stopifnot(identical(y1, y3))
770s +   }
770s + } # for (kk ...)
770s Random test #1
770s ties.method = max
770s ties.method = min
770s ties.method = average
770s ties.method = first
770s ties.method = last
770s ties.method = dense
770s Random test #2
770s ties.method = max
770s ties.method = min
770s ties.method = average
770s ties.method = first
770s ties.method = last
770s ties.method = dense
770s Random test #3
770s ties.method = max
770s ties.method = min
770s ties.method = average
770s ties.method = first
770s ties.method = last
770s ties.method = dense
770s Random test #4
770s ties.method = max
770s ties.method = min
770s ties.method = average
770s ties.method = first
770s ties.method = last
770s ties.method = dense
770s > 
770s > # Note, below we know ties.method %in% c("min", "max", "average") is correct
770s > 
770s > cat("Consistency checks for random:\n")
770s Consistency checks for random:
770s > tolerance <- 0.1
770s > nsamples <- 10000
770s > for (kk in 1:4) {
770s +   cat("Random test #", kk, "\n", sep = "")
770s +   x <- xs[[kk]]
770s +   tx <- t(x)
770s + 
770s +   for (ties in c("random")) {
770s +     cat(sprintf("ties.method = %s\n", ties))
770s +     
770s +     ## rowRanks():
770s +     y0 <- rowRanks_R(x, ties.method = ties)
770s +     y1 <- matrixStats::rowRanks(x, ties.method = ties)
770s +     
770s +     ## Assert symmetric rank differences
770s +     d <- y1 - y0
770s +     stopifnot(all(rowSums(d) == 0, na.rm = TRUE))
770s +     
770s +     ## Assert within [min, max]
770s +     y2min <- matrixStats::rowRanks(x, ties.method = "min")
770s +     y2max <- matrixStats::rowRanks(x, ties.method = "max")
770s +     stopifnot(all(y1 >= y2min, na.rm = TRUE) && all(y1 <= y2max, na.rm = TRUE))
770s +     ## Assert near average
770s +     y1list <- replicate(nsamples, matrixStats::rowRanks(x, ties.method = ties), simplify = FALSE)
770s +     y1mean <- Reduce(`+`, y1list) / nsamples
770s +     y2avg <- matrixStats::rowRanks(x, ties.method = "average")
770s +     stopifnot(all(abs(y1mean - y2avg) < tolerance, na.rm = TRUE))
770s + 
770s +     ## colRanks():
770s +     y0 <- colRanks_R(x, ties.method = ties)
770s +     y1 <- matrixStats::colRanks(x, ties.method = ties)
770s + 
770s +     ## Assert symmetric rank differences
770s +     d <- y1 - y0
770s +     stopifnot(all(rowSums(d) == 0, na.rm = TRUE))
770s + 
770s +     ## Assert within [min, max]
770s +     y2min <- matrixStats::colRanks(x, ties.method = "min")
770s +     y2max <- matrixStats::colRanks(x, ties.method = "max")
770s +     stopifnot(all(y1 >= y2min, na.rm = TRUE) && all(y1 <= y2max, na.rm = TRUE))
770s +     y1list <- replicate(nsamples, matrixStats::colRanks(x, ties.method = ties), simplify = FALSE)
770s +     y1mean <- Reduce(`+`, y1list) / nsamples
770s +     ## Assert near average
770s +     y2avg <- matrixStats::colRanks(x, ties.method = "average")
770s +     stopifnot(all(abs(y1mean - y2avg) < tolerance, na.rm = TRUE))
770s +   }
770s + } # for (kk ...)
771s Random test #1
771s ties.method = random
778s Random test #2
778s ties.method = random
783s Random test #3
783s ties.method = random
785s Random test #4
785s ties.method = random
787s > 
787s > 
787s > ## Exception handling
787s > x <- matrix(1:12, nrow = 3L, ncol = 4L)
787s > y <- try(rowRanks(x, ties.method = "unknown"), silent = TRUE)
787s > stopifnot(inherits(y, "try-error"))
787s > 
787s > y <- try(colRanks(x, ties.method = "unknown"), silent = TRUE)
787s > stopifnot(inherits(y, "try-error"))
787s > 
787s > dimnames <- list(letters[1:3], LETTERS[1:4])
787s > for (mode in c("integer", "double")){
787s +   storage.mode(x) <- mode
787s +   # Test with and without dimnames on x
787s +   for (setDimnames in c(TRUE, FALSE)) {
787s +     if (setDimnames) dimnames(x) <- dimnames
787s +     else dimnames(x) <- NULL
787s +     # Check names attribute
787s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
787s +       for (ties in c("max", "min", "average", "first", "last", "dense", "random")) {
787s +         cat(sprintf("ties.method = %s\n", ties))
787s +         # rowRanks():
787s +         y1 <- matrixStats::rowRanks(x, ties.method = ties, useNames = useNames)
787s +         if (ties != "last" || getRversion() >= "3.3.0") {
787s +           y2 <- rowRanks_R(x, ties.method = ties, useNames = useNames)
787s +           stopifnot(identical(y1, y2))
787s +         }
787s +         
787s +         y3 <- matrixStats::colRanks(t(x), ties.method = ties, useNames = useNames)
787s +         stopifnot(identical(y1, y3))
787s +         
787s +         # colRanks():
787s +         y1 <- matrixStats::colRanks(x, ties.method = ties, useNames = useNames)
787s +         if (ties != "last" || getRversion() >= "3.3.0") {
787s +           y2 <- colRanks_R(x, ties.method = ties, useNames = useNames)
787s +           stopifnot(identical(y1, y2))
787s +         }
787s +         
787s +         y3 <- matrixStats::rowRanks(t(x), ties.method = ties, useNames = useNames)
787s +         stopifnot(identical(y1, y3))
787s +         
787s +         # Check preserveShape
787s +         y1 <- matrixStats::colRanks(x, ties.method = ties, preserveShape = TRUE, useNames = useNames)
787s +         if (ties != "last" || getRversion() >= "3.3.0") {
787s +           y2 <- colRanks_R(x, ties.method = ties, preserveShape = TRUE, useNames = useNames)
787s +           stopifnot(identical(y1, y2))
787s +         }
787s +       }
787s +     }
787s +   }
787s + }
787s ties.method = max
787s ties.method = min
787s ties.method = average
787s ties.method = first
787s ties.method = last
787s ties.method = dense
787s ties.method = random
787s ties.method = max
787s ties.method = min
787s ties.method = average
787s ties.method = first
787s ties.method = last
787s ties.method = dense
787s ties.method = random
787s ties.method = max
787s ties.method = min
787s ties.method = average
787s ties.method = first
788s ties.method = last
788s ties.method = dense
788s ties.method = random
788s ties.method = max
788s ties.method = min
788s ties.method = average
788s ties.method = first
788s ties.method = last
788s ties.method = dense
788s ties.method = random
788s ties.method = max
788s ties.method = min
788s ties.method = average
788s ties.method = first
788s ties.method = last
788s ties.method = dense
788s ties.method = random
788s ties.method = max
788s ties.method = min
788s ties.method = average
788s ties.method = first
788s ties.method = last
788s ties.method = dense
788s ties.method = random
788s ties.method = max
788s ties.method = min
788s ties.method = average
788s ties.method = first
788s ties.method = last
788s ties.method = dense
788s ties.method = random
788s ties.method = max
788s ties.method = min
788s ties.method = average
788s ties.method = first
788s ties.method = last
788s ties.method = dense
788s ties.method = random
788s > 
788s 
788s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
788s Copyright (C) 2024 The R Foundation for Statistical Computing
788s Platform: arm-unknown-linux-gnueabihf (32-bit)
788s 
788s R is free software and comes with ABSOLUTELY NO WARRANTY.
788s You are welcome to redistribute it under certain conditions.
788s Type 'license()' or 'licence()' for distribution details.
788s 
788s R is a collaborative project with many contributors.
788s Type 'contributors()' for more information and
788s 'citation()' on how to cite R or R packages in publications.
788s 
788s Type 'demo()' for some demos, 'help()' for on-line help, or
788s 'help.start()' for an HTML browser interface to help.
788s Type 'q()' to quit R.
788s 
788s > library("matrixStats")
788s > 
788s > rowRanks_R <- function(x, ties.method = "average", ..., useNames = NA) {
788s +   ans <- t(apply(x, MARGIN = 1L, FUN = rank, na.last = "keep",
788s +                  ties.method = ties.method))
788s +   
788s +   # Preserve dimnames attribute?
788s +   dim(ans) <- dim(x)
788s +   dimnames(ans) <- if (isTRUE(useNames)) dimnames(x) else NULL
788s + 
788s +   ans
788s + }
788s > 
788s > colRanks_R <- function(x, ties.method, preserveShape = FALSE, ..., useNames = NA) {
788s +   ans <- t(apply(x, MARGIN = 2L, FUN = rank, na.last = "keep", ties.method = ties.method))
788s +   
788s +   # Preserve dimnames attribute?
788s +   tx <- t(x)
788s +   dim(ans) <- dim(tx)
788s +   dimnames(ans) <- if (isTRUE(useNames)) dimnames(tx) else NULL
788s +   
788s +   if (preserveShape) ans <- t(ans)
788s +   ans
788s + }
788s > 
788s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
788s > # Subsetted tests
788s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
788s > source("utils/validateIndicesFramework.R")
788s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
788s > storage.mode(x) <- "integer"
788s > 
788s > # To check dimnames attribute
788s > dimnames <- list(letters[1:6], LETTERS[1:6])
788s > 
788s > colRanks_R_t <- function(x, rows, cols, ..., useNames = NA) {
788s +   t(colRanks(t(x), rows = cols, cols = rows, preserveShape = TRUE, ..., useNames = useNames))
788s + }
788s > 
788s > # Test with and without dimnames on x
788s > for (setDimnames in c(TRUE, FALSE)) {
788s +   if (setDimnames) dimnames(x) <- dimnames
788s +   else dimnames(x) <- NULL
788s + 
788s +   count <- 0L
788s +   for (rows in index_cases) {
788s +     for (cols in index_cases) {
788s +       count <- count + 1L
788s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
788s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
788s +       useNames <- useNames[count %% length(useNames) + 1]
788s + 
788s +       validateIndicesTestMatrix(x, rows, cols,
788s +                                 ftest = rowRanks, fsure = rowRanks_R,
788s +                                 ties.method = "average", useNames = useNames)
788s +       
788s +       validateIndicesTestMatrix(x, rows, cols,
788s +                                 ftest = colRanks_R_t, fsure = rowRanks_R,
788s +                                 ties.method = "average", useNames = useNames)
788s +       
788s +       for (perserveShape in c(TRUE, FALSE)) {
788s +         validateIndicesTestMatrix(x, rows, cols,
788s +                                   ftest = colRanks, fsure = colRanks_R,
788s +                                   ties.method = "average", perserveShape = perserveShape,
788s +                                   useNames = useNames)          
788s +       }
788s +     }
788s +   }
788s + }
791s > 
792s 
792s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
792s Copyright (C) 2024 The R Foundation for Statistical Computing
792s Platform: arm-unknown-linux-gnueabihf (32-bit)
792s 
792s R is free software and comes with ABSOLUTELY NO WARRANTY.
792s You are welcome to redistribute it under certain conditions.
792s Type 'license()' or 'licence()' for distribution details.
792s 
792s R is a collaborative project with many contributors.
792s Type 'contributors()' for more information and
792s 'citation()' on how to cite R or R packages in publications.
792s 
792s Type 'demo()' for some demos, 'help()' for on-line help, or
792s 'help.start()' for an HTML browser interface to help.
792s Type 'q()' to quit R.
792s 
792s > library("matrixStats")
792s > 
792s > ## Always allow testing of the 'center' argument (as long as it's not defunct)
792s > options(matrixStats.center.onUse = "ignore")
792s > 
792s > ## Create isFALSE() if running on an old version of R
792s > if (!exists("isFALSE", mode="function")) {
792s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
792s + }
792s > 
792s > rowSds_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
792s +   suppressWarnings({
792s +     sigma <- apply(x, MARGIN = 1L, FUN = sd, na.rm = na.rm)
792s +   })
792s +   stopifnot(!any(is.infinite(sigma)))
792s +   
792s +   # Keep naming support consistency same as rowSds()
792s +   if (is.null(center) || ncol(x) <= 1L) {
792s +     if (is.na(useNames) || isFALSE(useNames)) names(sigma) <- NULL
792s +   }
792s +   else if (isFALSE(useNames)) names(sigma) <- NULL
792s +   sigma
792s + }
792s > 
792s > colSds_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
792s +   suppressWarnings({
792s +     sigma <- apply(x, MARGIN = 2L, FUN = sd, na.rm = na.rm)
792s +   })
792s +   stopifnot(!any(is.infinite(sigma)))
792s +   
792s +   # Keep naming support consistency same as colSds()
792s +   if (is.null(center) || nrow(x) <= 1L) {
792s +     if (is.na(useNames) || isFALSE(useNames)) names(sigma) <- NULL
792s +   }
792s +   if (isFALSE(useNames)) names(sigma) <- NULL
792s +   sigma
792s + }
792s > 
792s > 
792s > rowSds_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
792s +   center <- rowWeightedMeans(x, cols = cols, na.rm = na.rm, useNames = FALSE)
792s +   sigma <- rowSds(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
792s +   stopifnot(!any(is.infinite(sigma)))
792s +   sigma
792s + }
792s > 
792s > colSds_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
792s +   center <- colWeightedMeans(x, rows = rows, na.rm = na.rm, useNames = FALSE)
792s +   sigma <- colSds(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
792s +   stopifnot(!any(is.infinite(sigma)))
792s +   sigma
792s + }
792s > 
792s > 
792s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
792s > # With and without some NAs
792s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
792s > for (mode in c("integer", "double")) {
792s +   for (add_na in c(FALSE, TRUE)) {
792s +     cat("add_na = ", add_na, "\n", sep = "")
792s + 
792s +     x <- matrix(1:50 + 0.1, nrow = 10L, ncol = 5L)
792s +     if (add_na) {
792s +       x[3:7, c(2, 4)] <- NA_real_
792s +     }
792s +     cat("mode: ", mode, "\n", sep = "")
792s +     storage.mode(x) <- mode
792s +     str(x)
792s +     
792s +     # To check names attribute
792s +     dimnames <- list(letters[1:10], LETTERS[1:5])
792s +     
792s +     # Test with and without dimnames on x
792s +     for (setDimnames in c(TRUE, FALSE)) {
792s +       if (setDimnames) dimnames(x) <- dimnames
792s +       else dimnames(x) <- NULL
792s +       # Row/column ranges
792s +       for (na.rm in c(FALSE, TRUE)) {
792s +         # Check names attribute
792s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
792s +           r0 <- rowSds_R(x, na.rm = na.rm, useNames = useNames)
792s +           r1 <- rowSds(x, na.rm = na.rm, useNames = useNames)
792s +           r1b <- rowSds_center(x, na.rm = na.rm, useNames = useNames)
792s +           r2 <- colSds(t(x), na.rm = na.rm, useNames = useNames)
792s +           r2b <- colSds_center(t(x), na.rm = na.rm, useNames = useNames)
792s +           stopifnot(all.equal(r1, r2))
792s +           stopifnot(all.equal(r1, r0))
792s +           stopifnot(all.equal(r2, r0))
792s +           stopifnot(all.equal(r1b, r2b))
792s +           stopifnot(
792s +             !any(is.infinite(r1)),
792s +             !any(is.infinite(r2)),
792s +             !any(is.infinite(r1b)),
792s +             !any(is.infinite(r2b))
792s +           )
792s +         }
792s +       }
792s +     }
792s +   } # for (add_na ...)
792s + }
792s add_na = FALSE
792s mode: integer
792s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
792s add_na = TRUE
792s mode: integer
792s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
792s add_na = FALSE
792s mode: double
792s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
792s add_na = TRUE
792s mode: double
792s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
792s > 
792s > 
792s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
792s > # All NAs
792s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
792s > for (mode in c("integer", "double")) {
792s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
792s +   cat("mode: ", mode, "\n", sep = "")
792s +   storage.mode(x) <- mode
792s +   str(x)
792s +   
792s +   # Test with and without dimnames on x
792s +   for (setDimnames in c(TRUE, FALSE)) {
792s +     if (setDimnames) dimnames(x) <- dimnames
792s +     else dimnames(x) <- NULL
792s +     # Row/column ranges
792s +     for (na.rm in c(FALSE, TRUE)) {
792s +       # Check names attribute
792s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
792s +         r0 <- rowSds_R(x, na.rm = na.rm, useNames = useNames)
792s +         r1 <- rowSds(x, na.rm = na.rm, useNames = useNames)
792s +         r1b <- rowSds_center(x, na.rm = na.rm, useNames = useNames)
792s +         r2 <- colSds(t(x), na.rm = na.rm, useNames = useNames)
792s +         r2b <- colSds_center(t(x), na.rm = na.rm, useNames = useNames)
792s +         stopifnot(all.equal(r1, r2))
792s +         stopifnot(all.equal(r1, r0))
792s +         stopifnot(all.equal(r2, r0))
792s +         stopifnot(all.equal(r1b, r2b))
792s +         stopifnot(
792s +           !any(is.infinite(r1)),
792s +           !any(is.infinite(r2)),
792s +           !any(is.infinite(r1b)),
792s +           !any(is.infinite(r2b))
792s +         )
792s +       }
792s +     }
792s +   }
792s + }
792s mode: integer
792s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
792s mode: double
792s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
792s > 
792s > 
792s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
792s > # A 1x1 matrix
792s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
792s > x <- matrix(0, nrow = 1L, ncol = 1L)
792s > dimnames <- list("a", "A")
792s > for (na.rm in c(FALSE, TRUE)) {
792s +   cat("na.rm = ", na.rm, "\n", sep = "")
792s +   
792s +   # Test with and without dimnames on x
792s +   for (setDimnames in c(TRUE, FALSE)) {
792s +     if (setDimnames) dimnames(x) <- dimnames
792s +     else dimnames(x) <- NULL
792s +     # Row/column ranges
792s +     for (na.rm in c(FALSE, TRUE)) {
792s +       # Check names attribute
792s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
792s +         r0 <- rowSds_R(x, na.rm = na.rm, useNames = useNames)
792s +         r1 <- rowSds(x, na.rm = na.rm, useNames = useNames)
792s +         r1b <- rowSds_center(x, na.rm = na.rm, useNames = useNames)
792s +         r2 <- colSds(t(x), na.rm = na.rm, useNames = useNames)
792s +         r2b <- colSds_center(t(x), na.rm = na.rm, useNames = useNames)
792s +         stopifnot(all.equal(r1, r2))
792s +         stopifnot(all.equal(r1, r0))
792s +         stopifnot(all.equal(r2, r0))
792s +         stopifnot(all.equal(r1b, r2b))
792s +         stopifnot(
792s +           !any(is.infinite(r1)),
792s +           !any(is.infinite(r2)),
792s +           !any(is.infinite(r1b)),
792s +           !any(is.infinite(r2b))
792s +         )
792s +       }
792s +     }
792s +   }
792s + }
792s na.rm = FALSE
792s na.rm = TRUE
792s > 
792s 
792s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
792s Copyright (C) 2024 The R Foundation for Statistical Computing
792s Platform: arm-unknown-linux-gnueabihf (32-bit)
792s 
792s R is free software and comes with ABSOLUTELY NO WARRANTY.
792s You are welcome to redistribute it under certain conditions.
792s Type 'license()' or 'licence()' for distribution details.
792s 
792s R is a collaborative project with many contributors.
792s Type 'contributors()' for more information and
792s 'citation()' on how to cite R or R packages in publications.
792s 
792s Type 'demo()' for some demos, 'help()' for on-line help, or
792s 'help.start()' for an HTML browser interface to help.
792s Type 'q()' to quit R.
792s 
796s > library("matrixStats")
796s > 
796s > ## Always allow testing of the 'center' argument (as long as it's not defunct)
796s > options(matrixStats.center.onUse = "ignore")
796s > 
796s > ## Create isFALSE() if running on an old version of R
796s > if (!exists("isFALSE", mode="function")) {
796s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
796s + }
796s > 
796s > rowSds_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
796s +   suppressWarnings({
796s +     sigma <- apply(x, MARGIN = 1L, FUN = sd, na.rm = na.rm)
796s +   })
796s +   stopifnot(!any(is.infinite(sigma)))
796s +   
796s +   # Keep naming support consistency same as rowSds()
796s +   if (is.null(center) || ncol(x) <= 1L) {
796s +     if (is.na(useNames) || isFALSE(useNames)) names(sigma) <- NULL
796s +   }
796s +   else if (isFALSE(useNames)) names(sigma) <- NULL
796s +   sigma
796s + }
796s > 
796s > colSds_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
796s +   suppressWarnings({
796s +     sigma <- apply(x, MARGIN = 2L, FUN = sd, na.rm = na.rm)
796s +   })
796s +   stopifnot(!any(is.infinite(sigma)))
796s +   
796s +   # Keep naming support consistency same as colSds()
796s +   if (is.null(center) || nrow(x) <= 1L) {
796s +     if (is.na(useNames) || isFALSE(useNames)) names(sigma) <- NULL
796s +   }
796s +   else if (isFALSE(useNames)) names(sigma) <- NULL
796s +   sigma
796s + }
796s > 
796s > 
796s > rowSds_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
796s +   center <- rowWeightedMeans(x, cols = cols, na.rm = na.rm, useNames = FALSE)
796s +   sigma <- rowSds(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
796s +   stopifnot(!any(is.infinite(sigma)))
796s +   sigma
796s + }
796s > 
796s > colSds_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
796s +   center <- colWeightedMeans(x, rows = rows, na.rm = na.rm, useNames = FALSE)
796s +   sigma <- colSds(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
796s +   stopifnot(!any(is.infinite(sigma)))
796s +   sigma
796s + }
796s > 
796s > 
796s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
796s > # Subsetted tests
796s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
796s > source("utils/validateIndicesFramework.R")
796s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
796s > storage.mode(x) <- "integer"
796s > 
796s > # To check names attribute
796s > dimnames <- list(letters[1:6], LETTERS[1:6])
796s > 
796s > # Test with and without dimnames on x
796s > for (setDimnames in c(TRUE, FALSE)) {
796s +   if (setDimnames) dimnames(x) <- dimnames
796s +   else dimnames(x) <- NULL
796s + 
796s +   count <- 0L
796s +   for (rows in index_cases) {
796s +     for (cols in index_cases) {
796s +       count <- count + 1L
796s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
796s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
796s +       useNames <- useNames[count %% length(useNames) + 1]
796s +       
796s +       validateIndicesTestMatrix(x, rows, cols,
796s +                                 ftest = rowSds, fsure = rowSds_R,
796s +                                 na.rm = na.rm, useNames = useNames)
796s +       validateIndicesTestMatrix(x, rows, cols,
796s +                                 ftest = rowSds_center, fsure = rowSds_R,
796s +                                 na.rm = na.rm, center = TRUE, useNames = useNames)
796s + 
796s +       validateIndicesTestMatrix(x, rows, cols,
796s +                                 fcoltest = colSds, fsure = rowSds_R,
796s +                                 na.rm = na.rm, useNames = useNames)
796s +       validateIndicesTestMatrix(x, rows, cols,
796s +                                 fcoltest = colSds_center, fsure = rowSds_R,
796s +                                 na.rm = na.rm, center = TRUE, useNames = useNames)
796s +     }
796s +   }
796s + }
799s > 
799s 
799s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
799s Copyright (C) 2024 The R Foundation for Statistical Computing
799s Platform: arm-unknown-linux-gnueabihf (32-bit)
799s 
799s R is free software and comes with ABSOLUTELY NO WARRANTY.
799s You are welcome to redistribute it under certain conditions.
799s Type 'license()' or 'licence()' for distribution details.
799s 
799s R is a collaborative project with many contributors.
799s Type 'contributors()' for more information and
799s 'citation()' on how to cite R or R packages in publications.
799s 
799s Type 'demo()' for some demos, 'help()' for on-line help, or
799s 'help.start()' for an HTML browser interface to help.
799s Type 'q()' to quit R.
799s 
799s > library("matrixStats")
799s > 
799s > rowSums2_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
799s +   ## FIXME: sum() may overflow for integers, whereas
799s +   ## base::rowSums() doesn't.  What should rowSums2() do?
799s +   ## apply(x, MARGIN = 1L, FUN = sum, na.rm = na.rm)
799s +   res <- rowSums(x, na.rm = na.rm)
799s +   if (is.na(useNames) || !useNames) names(res) <- NULL
799s +   res
799s + }
799s > 
799s > colSums2_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
799s +   ## FIXME: sum() may overflow for integers, whereas
799s +   ## base::colSums() doesn't.  What should colSums2() do?
799s +   ## apply(x, MARGIN = 2L, FUN = sum, na.rm = na.rm)
799s +   res <- colSums(x, na.rm = na.rm)
799s +   if (is.na(useNames) || !useNames) names(res) <- NULL
799s +   res
799s + }
799s > 
799s > for (mode in c("integer", "logical", "double")) {
799s +   x <- matrix(-4:4, nrow = 3, ncol = 3)
799s +   storage.mode(x) <- mode
799s +   if (mode == "double") x <- x + 0.1
799s +   
799s +   # To check names attribute
799s +   dimnames <- list(letters[1:3], LETTERS[1:3])
799s +   
799s +   # Test with and without dimnames on x
799s +   for (setDimnames in c(TRUE, FALSE)) {
799s +     if (setDimnames) dimnames(x) <- dimnames
799s +     else dimnames(x) <- NULL
799s +     # Check names attribute
799s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
799s +       y0 <- rowSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +       y1 <- rowSums2(x, na.rm = FALSE, useNames = useNames)
799s +       stopifnot(all.equal(y1, y0))
799s +       
799s +       y0 <- colSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +       y1 <- colSums2(x, na.rm = FALSE, useNames = useNames)
799s +       stopifnot(all.equal(y1, y0))
799s +     }
799s +   }
799s + }
799s > 
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > # Special case: Single-element matrix
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > cat("Special case: Single-element matrix:\n")
799s Special case: Single-element matrix:
799s > for (mode in c("integer", "logical", "double")) {
799s +   x <- matrix(1, nrow = 1, ncol = 1)
799s +   storage.mode(x) <- mode
799s +   
799s +   # To check names attribute
799s +   dimnames <- list("a", "A")
799s +   
799s +   # Test with and without dimnames on x
799s +   for (setDimnames in c(TRUE, FALSE)) {
799s +     if (setDimnames) dimnames(x) <- dimnames
799s +     else dimnames(x) <- NULL
799s +     # Check names attribute
799s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
799s +       y0 <- rowSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +       y1 <- rowSums2(x, na.rm = FALSE, useNames = useNames)
799s +       stopifnot(all.equal(y1, y0))
799s +       
799s +       y0 <- colSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +       y1 <- colSums2(x, na.rm = FALSE, useNames = useNames)
799s +       stopifnot(all.equal(y1, y0))
799s +     }
799s +   }
799s + }
799s > 
799s > 
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > # Special case: Empty matrix
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > cat("Special case: Empty matrix:\n")
799s Special case: Empty matrix:
799s > for (mode in c("integer", "logical", "double")) {
799s +   x <- matrix(integer(0), nrow = 0, ncol = 0)
799s +   storage.mode(x) <- mode
799s + 
799s +   y0 <- rowSums2_R(x, na.rm = FALSE)
799s +   y1 <- rowSums2(x, na.rm = FALSE)
799s +   stopifnot(all.equal(y1, y0))
799s + 
799s +   y0 <- colSums2_R(x, na.rm = FALSE)
799s +   y1 <- colSums2(x, na.rm = FALSE)
799s +   stopifnot(all.equal(y1, y0))
799s + }
799s > 
799s > 
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > # Special case: All NAs
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > cat("Special case: All NAs:\n")
799s Special case: All NAs:
799s > for (mode in c("integer", "logical", "double")) {
799s +   x <- matrix(NA_integer_, nrow = 3, ncol = 3)
799s +   storage.mode(x) <- mode
799s +   
799s +   # To check names attribute
799s +   dimnames <- list(letters[1:3], LETTERS[1:3])
799s +   
799s +   # Test with and without dimnames on x
799s +   for (setDimnames in c(TRUE, FALSE)) {
799s +     if (setDimnames) dimnames(x) <- dimnames
799s +     else dimnames(x) <- NULL
799s +     # Check names attribute
799s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
799s +       y0 <- rowSums2_R(x, na.rm = TRUE, useNames = useNames)
799s +       y1 <- rowSums2(x, na.rm = TRUE, useNames = useNames)
799s +       stopifnot(all.equal(y1, y0))
799s +       
799s +       y0 <- colSums2_R(x, na.rm = TRUE, useNames = useNames)
799s +       y1 <- colSums2(x, na.rm = TRUE, useNames = useNames)
799s +       stopifnot(all.equal(y1, y0))
799s +     }
799s +   }
799s + }
799s > 
799s > 
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > # Special case: All NaNs
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > cat("Special case: All NaNs:\n")
799s Special case: All NaNs:
799s > x <- matrix(NA_real_, nrow = 3, ncol = 3)
799s > 
799s > # Test with and without dimnames on x
799s > for (setDimnames in c(TRUE, FALSE)) {
799s +   if (setDimnames) dimnames(x) <- dimnames
799s +   else dimnames(x) <- NULL
799s +   # Check names attribute
799s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
799s +     y0 <- rowSums2_R(x, na.rm = TRUE, useNames = useNames)
799s +     y1 <- rowSums2(x, na.rm = TRUE, useNames = useNames)
799s +     stopifnot(all.equal(y1, y0))
799s +     
799s +     y0 <- colSums2_R(x, na.rm = TRUE, useNames = useNames)
799s +     y1 <- colSums2(x, na.rm = TRUE, useNames = useNames)
799s +     stopifnot(all.equal(y1, y0))
799s +   }
799s + }
799s > 
799s > 
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > # Special case: All Infs
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > cat("Special case: All Infs:\n")
799s Special case: All Infs:
799s > x <- matrix(Inf, nrow = 3, ncol = 3)
799s > 
799s > # Test with and without dimnames on x
799s > for (setDimnames in c(TRUE, FALSE)) {
799s +   if (setDimnames) dimnames(x) <- dimnames
799s +   else dimnames(x) <- NULL
799s +   # Check names attribute
799s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
799s +     y0 <- rowSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +     y1 <- rowSums2(x, na.rm = FALSE, useNames = useNames)
799s +     stopifnot(all.equal(y1, y0))
799s +     
799s +     y0 <- colSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +     y1 <- colSums2(x, na.rm = FALSE, useNames = useNames)
799s +     stopifnot(all.equal(y1, y0))
799s +   }
799s + }
799s > 
799s > 
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > # Special case: All -Infs
799s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
799s > cat("Special case: All -Infs:\n")
799s Special case: All -Infs:
799s > x <- matrix(-Inf, nrow = 3, ncol = 3)
799s > 
799s > # Test with and without dimnames on x
799s > for (setDimnames in c(TRUE, FALSE)) {
799s +   if (setDimnames) dimnames(x) <- dimnames
799s +   else dimnames(x) <- NULL
799s +   # Check names attribute
799s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
799s +     y0 <- rowSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +     y1 <- rowSums2(x, na.rm = FALSE, useNames = useNames)
799s +     stopifnot(all.equal(y1, y0))
799s +     
799s +     y0 <- colSums2_R(x, na.rm = FALSE, useNames = useNames)
799s +     y1 <- colSums2(x, na.rm = FALSE, useNames = useNames)
799s +     stopifnot(all.equal(y1, y0))
799s +   }
799s + }
800s > 
800s > 
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > # Special case: Infs and -Infs
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > cat("Special case: Infs and -Infs:\n")
800s Special case: Infs and -Infs:
800s > x <- matrix(c(-Inf, +Inf), nrow = 4, ncol = 4)
800s > 
800s > # To check names attribute
800s > dimnames <- list(letters[1:4], LETTERS[1:4])
800s > 
800s > # Test with and without dimnames on x
800s > for (setDimnames in c(TRUE, FALSE)) {
800s +   if (setDimnames) dimnames(x) <- dimnames
800s +   else dimnames(x) <- NULL
800s +   # Check names attribute
800s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
800s +     y0 <- rowSums2_R(x, na.rm = FALSE, useNames = useNames)
800s +     y1 <- rowSums2(x, na.rm = FALSE, useNames = useNames)
800s +     stopifnot(all.equal(y1, y0))
800s +     
800s +     y0 <- colSums2_R(x, na.rm = FALSE, useNames = useNames)
800s +     y1 <- colSums2(x, na.rm = FALSE, useNames = useNames)
800s +     stopifnot(all.equal(y1, y0))
800s +   }
800s + }
800s > 
800s > 
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > # Special case: NaNs and NAs
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > cat("Special case: Infs and -Infs:\n")
800s Special case: Infs and -Infs:
800s > x <- matrix(c(NaN, NA_real_), nrow = 4, ncol = 4)
800s > 
800s > y0 <- rowSums(x, na.rm = FALSE)
800s > str(y0)
800s  num [1:4] NaN NA NaN NA
800s > stopifnot(all(is.na(y0)), length(unique(y0)) >= 1L)
800s > y1 <- rowSums2(x, na.rm = FALSE)
800s > str(y0)
800s  num [1:4] NaN NA NaN NA
800s > stopifnot(all(is.na(y1)), length(unique(y1)) >= 1L)
800s > stopifnot(all.equal(y1, y0))
800s > 
800s > y0 <- colSums(x, na.rm = FALSE)
800s > stopifnot(all(is.na(y0)), length(unique(y0)) == 1L)
800s > y1 <- colSums2(x, na.rm = FALSE)
800s > stopifnot(all(is.na(y1)), length(unique(y1)) == 1L)
800s > ## NOTE, due to compiler optimization, it is not guaranteed that NA is
800s > ## returned here (as one would expect). NaN might very well be returned,
800s > ## when both NA and NaN are involved.  This is an accepted feature in R,
800s > ## which is documented in help("is.nan").  See also
800s > ## https://stat.ethz.ch/pipermail/r-devel/2017-April/074009.html.
800s > ## Thus, we cannot guarantee that y1 is identical to y0.
800s > 
800s > 
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > # Special case: Integer overflow with ties
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > cat("Special case: Integer overflow with ties:\n")
800s Special case: Integer overflow with ties:
800s > x <- matrix(.Machine$integer.max, nrow = 4, ncol = 4)
800s > 
800s > # Test with and without dimnames on x
800s > for (setDimnames in c(TRUE, FALSE)) {
800s +   if (setDimnames) dimnames(x) <- dimnames
800s +   else dimnames(x) <- NULL
800s +   # Check names attribute
800s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
800s +     y0 <- rowSums2_R(x, na.rm = FALSE, useNames = useNames)
800s +     y1 <- rowSums2(x, na.rm = FALSE, useNames = useNames)
800s +     stopifnot(all.equal(y1, y0))
800s +     
800s +     y0 <- colSums2_R(x, na.rm = FALSE, useNames = useNames)
800s +     y1 <- colSums2(x, na.rm = FALSE, useNames = useNames)
800s +     stopifnot(all.equal(y1, y0))
800s +   }
800s + }
800s > 
800s > 
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > # Consistency checks
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > set.seed(1)
800s > 
800s > cat("Consistency checks:\n")
800s Consistency checks:
800s > n_sims <- if (Sys.getenv("_R_CHECK_USE_VALGRIND_") != "") 4L else 20L
800s > for (kk in seq_len(n_sims)) {
800s +   cat("Random test #", kk, "\n", sep = "")
800s + 
800s +   # Simulate data in a matrix of any shape
800s +   dim <- sample(50:200, size = 2)
800s +   n <- prod(dim)
800s +   x <- rnorm(n, sd = 100)
800s +   dim(x) <- dim
800s + 
800s +   # Add NAs?
800s +   if ((kk %% 4) %in% c(3, 0)) {
800s +     cat("Adding NAs\n")
800s +     nna <- sample(n, size = 1)
800s +     na_values <- c(NA_real_, NaN)
800s +     t <- sample(na_values, size = nna, replace = TRUE)
800s +     x[sample(length(x), size = nna)] <- t
800s +   }
800s + 
800s +   # Mode?
800s +   modes <- "double"
800s +   if ((kk %% 4) %in% c(2, 0)) {
800s +     modes <- c("integer", "logical")
800s +   }
800s + 
800s +   for (mode in modes) {
800s +     if (mode != "double") {
800s +       cat(sprintf("Coercing from %s to %s\n", storage.mode(x), mode))
800s +       storage.mode(x) <- mode
800s +     }
800s + 
800s +     na.rm <- sample(c(TRUE, FALSE), size = 1)
800s +   
800s +     # rowSums2():
800s +     y0 <- rowSums2_R(x, na.rm = na.rm)
800s +     y1 <- rowSums2(x, na.rm = na.rm)
800s +     stopifnot(all.equal(y1, y0))
800s +     y2 <- colSums2(t(x), na.rm = na.rm)
800s +     stopifnot(all.equal(y2, y0))
800s +   
800s +     # colSums2():
800s +     y0 <- colSums2_R(x, na.rm = na.rm)
800s +     y1 <- colSums2(x, na.rm = na.rm)
800s +     stopifnot(all.equal(y1, y0))
800s +     y2 <- rowSums2(t(x), na.rm = na.rm)
800s +     stopifnot(all.equal(y2, y0))
800s +   }
800s + } # for (kk ...)
800s Random test #1
800s Random test #2
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #3
800s Adding NAs
800s Random test #4
800s Adding NAs
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #5
800s Random test #6
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #7
800s Adding NAs
800s Random test #8
800s Adding NAs
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #9
800s Random test #10
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #11
800s Adding NAs
800s Random test #12
800s Adding NAs
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #13
800s Random test #14
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #15
800s Adding NAs
800s Random test #16
800s Adding NAs
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #17
800s Random test #18
800s Coercing from double to integer
800s Coercing from integer to logical
800s Random test #19
800s Adding NAs
800s Random test #20
800s Adding NAs
800s Coercing from double to integer
800s Coercing from integer to logical
800s > 
800s 
800s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
800s Copyright (C) 2024 The R Foundation for Statistical Computing
800s Platform: arm-unknown-linux-gnueabihf (32-bit)
800s 
800s R is free software and comes with ABSOLUTELY NO WARRANTY.
800s You are welcome to redistribute it under certain conditions.
800s Type 'license()' or 'licence()' for distribution details.
800s 
800s R is a collaborative project with many contributors.
800s Type 'contributors()' for more information and
800s 'citation()' on how to cite R or R packages in publications.
800s 
800s Type 'demo()' for some demos, 'help()' for on-line help, or
800s 'help.start()' for an HTML browser interface to help.
800s Type 'q()' to quit R.
800s 
800s > library("matrixStats")
800s > 
800s > rowSums2_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
800s +   ## FIXME: sum() may overflow for integers, whereas
800s +   ## base::rowSums() doesn't.  What should rowSums2() do?
800s +   ## apply(x, MARGIN = 1L, FUN = sum, na.rm = na.rm)
800s +   res <- rowSums(x, na.rm = na.rm)
800s +   if (is.na(useNames) || !useNames) names(res) <- NULL
800s +   res
800s + }
800s > 
800s > colSums2_R <- function(x, na.rm = FALSE, ..., useNames = NA) {
800s +   ## FIXME: sum() may overflow for integers, whereas
800s +   ## base::colSums() doesn't.  What should colSums2() do?
800s +   ## apply(x, MARGIN = 2L, FUN = sum, na.rm = na.rm)
800s +   res <- colSums(x, na.rm = na.rm)
800s +   if (is.na(useNames) || !useNames) names(res) <- NULL
800s +   res
800s + }
800s > 
800s > 
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > # Subsetted tests
800s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
800s > source("utils/validateIndicesFramework.R")
800s > x <- matrix(runif(6 * 6, min = -3, max = 3), nrow = 6, ncol = 6)
800s > storage.mode(x) <- "integer"
800s > 
800s > # To check names attribute
800s > dimnames <- list(letters[1:6], LETTERS[1:6])
800s > 
800s > # Test with and without dimnames on x
800s > for (setDimnames in c(TRUE, FALSE)) {
800s +   if (setDimnames) dimnames(x) <- dimnames
800s +   else dimnames(x) <- NULL
800s +   for (rows in index_cases) {
800s +     for (cols in index_cases) {
800s +       for (na.rm in c(TRUE, FALSE)) {
800s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
800s +           validateIndicesTestMatrix(x, rows, cols,
800s +                                     ftest = rowSums2, fsure = rowSums2_R,
800s +                                     na.rm = na.rm, useNames = useNames)
800s +           validateIndicesTestMatrix(x, rows, cols,
800s +                                     fcoltest = colSums2, fsure = rowSums2_R,
800s +                                     na.rm = na.rm, useNames = useNames)
800s +         }
800s +       }
800s +     }
800s +   }
800s + }
803s > 
803s 
803s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
803s Copyright (C) 2024 The R Foundation for Statistical Computing
803s Platform: arm-unknown-linux-gnueabihf (32-bit)
803s 
803s R is free software and comes with ABSOLUTELY NO WARRANTY.
803s You are welcome to redistribute it under certain conditions.
803s Type 'license()' or 'licence()' for distribution details.
803s 
803s R is a collaborative project with many contributors.
803s Type 'contributors()' for more information and
803s 'citation()' on how to cite R or R packages in publications.
803s 
803s Type 'demo()' for some demos, 'help()' for on-line help, or
803s 'help.start()' for an HTML browser interface to help.
803s Type 'q()' to quit R.
803s 
803s > library("matrixStats")
803s > 
803s > nrow <- 6L
803s > ncol <- 5L
803s > data <- matrix(0:4, nrow = nrow, ncol = ncol)
803s > 
803s > # To check names attribute
803s > dimnames <- list(letters[1:6], LETTERS[1:5])
803s > 
803s > modes <- c("integer", "logical", "raw")
803s > for (mode in modes) {
803s +   cat(sprintf("Mode: %s...\n", mode))
803s + 
803s +   x <- data
803s +   if (mode == "logical") x <- x - 2L
803s +   if (mode != "raw") x[c(2,5,7)] <- NA_integer_
803s +   storage.mode(x) <- mode
803s +   print(x)
803s + 
803s +   unique_values <- unique(as.vector(x))
803s +   nbr_of_unique_values <- length(unique_values)
803s + 
803s +   y <- rowTabulates(x)
803s +   print(y)
803s +   stopifnot(
803s +     identical(dim(y), c(nrow, nbr_of_unique_values)),
803s +     all(y >= 0)
803s +   )
803s +   if (mode != "raw") {
803s +     y0 <- t(table(x, row(x), useNA = "always")[, seq_len(nrow(x))])
803s +     stopifnot(all(y == y0))
803s +   }
803s +   # Check names attribute
803s +   dimnames(x) <- dimnames
803s +   y1 <- rowTabulates(x, useNames = FALSE)
803s +   stopifnot(all.equal(y1, y))
803s +   if (!matrixStats:::isUseNamesNADefunct()) {
803s +     y2 <- rowTabulates(x, useNames = NA)
803s +     stopifnot(all.equal(y2, y))
803s +   }
803s +   y <- rowTabulates(x, useNames = TRUE)
803s +   stopifnot(identical(rownames(y), rownames(x)))
803s +   dimnames(x) <- NULL
803s + 
803s +   y <- colTabulates(x)
803s +   print(y)
803s +   stopifnot(
803s +     identical(dim(y), c(ncol, nbr_of_unique_values)),
803s +     all(y >= 0)
803s +   )
803s +   if (mode != "raw") {
803s +     y0 <- t(table(x, col(x), useNA = "always")[, seq_len(ncol(x))])
803s +     stopifnot(all(y == y0))
803s +   }
803s +   # Check names attribute
803s +   dimnames(x) <- dimnames
803s +   y1 <- colTabulates(x, useNames = FALSE)
803s +   stopifnot(all.equal(y1, y))
803s +   if (!matrixStats:::isUseNamesNADefunct()) {
803s +     y2 <- colTabulates(x, useNames = NA)
803s +     stopifnot(all.equal(y2, y))
803s +   }
803s +   y <- colTabulates(x, useNames = TRUE)
803s +   stopifnot(identical(rownames(y), colnames(x)))
803s +   dimnames(x) <- NULL
803s + 
803s +   # Count only certain values
803s +   if (mode == "integer") {
803s +     subset <- c(0:2, NA_integer_)
803s +   } else if (mode == "logical") {
803s +     subset <- c(TRUE, FALSE, NA)
803s +   } else {
803s +     subset <- c(0:2)
803s +   }
803s +   y <- rowTabulates(x, values = subset)
803s +   print(y)
803s +   stopifnot(identical(dim(y), c(nrow, length(subset))))
803s +   # Check names attribute
803s +   dimnames(x) <- dimnames
803s +   y1 <- rowTabulates(x, values = subset, useNames = FALSE)
803s +   stopifnot(all.equal(y1, y))
803s +   if (!matrixStats:::isUseNamesNADefunct()) {
803s +     y2 <- rowTabulates(x, values = subset, useNames = NA)
803s +     stopifnot(all.equal(y2, y))
803s +   }  
803s +   y <- rowTabulates(x, values = subset, useNames = TRUE)
803s +   stopifnot(identical(rownames(y), rownames(x)))
803s +   dimnames(x) <- NULL
803s + 
803s +   y <- colTabulates(x, values = subset)
803s +   print(y)
803s +   stopifnot(identical(dim(y), c(ncol, length(subset))))
803s +   # Check names attribute
803s +   dimnames(x) <- dimnames
803s +   y1 <- colTabulates(x, values = subset, useNames = FALSE)
803s +   stopifnot(all.equal(y1, y))
803s +   if (!matrixStats:::isUseNamesNADefunct()) {
803s +     y2 <- colTabulates(x, values = subset, useNames = NA)
803s +     stopifnot(all.equal(y2, y))
803s +   }
803s +   y <- colTabulates(x, values = subset, useNames = TRUE)
803s +   stopifnot(identical(rownames(y), colnames(x)))
803s +   dimnames(x) <- NULL
803s + 
803s +   # Raw
803s +   if (mode %in% c("integer", "raw")) {
803s +     subset <- c(0:2)
803s +     
803s +     y <- rowTabulates(x, values = as.raw(subset))
803s +     print(y)
803s +     stopifnot(identical(dim(y), c(nrow, length(subset))))
803s +     # Check names attribute
803s +     dimnames(x) <- dimnames
803s +     y1 <- rowTabulates(x, values = as.raw(subset), useNames = FALSE)
803s +     stopifnot(all.equal(y1, y))
803s +     if (!matrixStats:::isUseNamesNADefunct()) {
803s +       y2 <- rowTabulates(x, values = as.raw(subset), useNames = NA)
803s +       stopifnot(all.equal(y2, y))
803s +     }
803s +     y3 <- rowTabulates(x, values = as.raw(subset), useNames = TRUE)
803s +     stopifnot(identical(rownames(y3), rownames(x)))
803s +     dimnames(x) <- NULL
803s +     
803s +     y2 <- colTabulates(t(x), values = as.raw(subset))
803s +     print(y2)
803s +     stopifnot(
803s +       identical(dim(y2), c(nrow, length(subset))),
803s +       identical(y2, y)
803s +     )
803s +     # Check names attribute
803s +     dimnames(x) <- dimnames
803s +     y1 <- colTabulates(t(x), values = as.raw(subset), useNames = FALSE)
803s +     stopifnot(all.equal(y1, y))
803s +     if (!matrixStats:::isUseNamesNADefunct()) {
803s +       y2 <- colTabulates(t(x), values = as.raw(subset), useNames = NA)
803s +       stopifnot(all.equal(y2, y))
803s +     }
803s +     y <- colTabulates(t(x), values = as.raw(subset), useNames = TRUE)
803s +     stopifnot(identical(rownames(y), colnames(t(x))))
803s +     dimnames(x) <- NULL
803s +   }
803s + 
803s +   cat(sprintf("Mode: %s...done\n", mode))
803s + } # for (mode ...)
804s Mode: integer...
804s      [,1] [,2] [,3] [,4] [,5]
804s [1,]    0   NA    2    3    4
804s [2,]   NA    2    3    4    0
804s [3,]    2    3    4    0    1
804s [4,]    3    4    0    1    2
804s [5,]   NA    0    1    2    3
804s [6,]    0    1    2    3    4
804s      0 1 2 3 4 <NA>
804s [1,] 1 0 1 1 1    1
804s [2,] 1 0 1 1 1    1
804s [3,] 1 1 1 1 1    0
804s [4,] 1 1 1 1 1    0
804s [5,] 1 1 1 1 0    1
804s [6,] 1 1 1 1 1    0
804s      0 1 2 3 4 <NA>
804s [1,] 2 0 1 1 0    2
804s [2,] 1 1 1 1 1    1
804s [3,] 1 1 2 1 1    0
804s [4,] 1 1 1 2 1    0
804s [5,] 1 1 1 1 2    0
804s      0 1 2 <NA>
804s [1,] 1 0 1    1
804s [2,] 1 0 1    1
804s [3,] 1 1 1    0
804s [4,] 1 1 1    0
804s [5,] 1 1 1    1
804s [6,] 1 1 1    0
804s      0 1 2 <NA>
804s [1,] 2 0 1    2
804s [2,] 1 1 1    1
804s [3,] 1 1 2    0
804s [4,] 1 1 1    0
804s [5,] 1 1 1    0
804s      0x0 0x1 0x2
804s [1,]   1   0   1
804s [2,]   1   0   1
804s [3,]   1   1   1
804s [4,]   1   1   1
804s [5,]   1   1   1
804s [6,]   1   1   1
804s      0x0 0x1 0x2
804s [1,]   1   0   1
804s [2,]   1   0   1
804s [3,]   1   1   1
804s [4,]   1   1   1
804s [5,]   1   1   1
804s [6,]   1   1   1
804s Mode: integer...done
804s Mode: logical...
804s       [,1]  [,2]  [,3]  [,4]  [,5]
804s [1,]  TRUE    NA FALSE  TRUE  TRUE
804s [2,]    NA FALSE  TRUE  TRUE  TRUE
804s [3,] FALSE  TRUE  TRUE  TRUE  TRUE
804s [4,]  TRUE  TRUE  TRUE  TRUE FALSE
804s [5,]    NA  TRUE  TRUE FALSE  TRUE
804s [6,]  TRUE  TRUE FALSE  TRUE  TRUE
804s      FALSE TRUE <NA>
804s [1,]     1    3    1
804s [2,]     1    3    1
804s [3,]     1    4    0
804s [4,]     1    4    0
804s [5,]     1    3    1
804s [6,]     1    4    0
804s      FALSE TRUE <NA>
804s [1,]     1    3    2
804s [2,]     1    4    1
804s [3,]     2    4    0
804s [4,]     1    5    0
804s [5,]     1    5    0
804s      TRUE FALSE <NA>
804s [1,]    3     1    1
804s [2,]    3     1    1
804s [3,]    4     1    0
804s [4,]    4     1    0
804s [5,]    3     1    1
804s [6,]    4     1    0
804s      TRUE FALSE <NA>
804s [1,]    3     1    2
804s [2,]    4     1    1
804s [3,]    4     2    0
804s [4,]    5     1    0
804s [5,]    5     1    0
804s Mode: logical...done
804s Mode: raw...
804s      [,1] [,2] [,3] [,4] [,5]
804s [1,]   00   01   02   03   04
804s [2,]   01   02   03   04   00
804s [3,]   02   03   04   00   01
804s [4,]   03   04   00   01   02
804s [5,]   04   00   01   02   03
804s [6,]   00   01   02   03   04
804s      0x0 0x1 0x2 0x3 0x4
804s [1,]   1   1   1   1   1
804s [2,]   1   1   1   1   1
804s [3,]   1   1   1   1   1
804s [4,]   1   1   1   1   1
804s [5,]   1   1   1   1   1
804s [6,]   1   1   1   1   1
804s      0x0 0x1 0x2 0x3 0x4
804s [1,]   2   1   1   1   1
804s [2,]   1   2   1   1   1
804s [3,]   1   1   2   1   1
804s [4,]   1   1   1   2   1
804s [5,]   1   1   1   1   2
804s      0 1 2
804s [1,] 1 1 1
804s [2,] 1 1 1
804s [3,] 1 1 1
804s [4,] 1 1 1
804s [5,] 1 1 1
804s [6,] 1 1 1
804s      0 1 2
804s [1,] 2 1 1
804s [2,] 1 2 1
804s [3,] 1 1 2
804s [4,] 1 1 1
804s [5,] 1 1 1
804s      0x0 0x1 0x2
804s [1,]   1   1   1
804s [2,]   1   1   1
804s [3,]   1   1   1
804s [4,]   1   1   1
804s [5,]   1   1   1
804s [6,]   1   1   1
804s      0x0 0x1 0x2
804s [1,]   1   1   1
804s [2,]   1   1   1
804s [3,]   1   1   1
804s [4,]   1   1   1
804s [5,]   1   1   1
804s [6,]   1   1   1
804s Mode: raw...done
804s > 
804s 
804s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
804s Copyright (C) 2024 The R Foundation for Statistical Computing
804s Platform: arm-unknown-linux-gnueabihf (32-bit)
804s 
804s R is free software and comes with ABSOLUTELY NO WARRANTY.
804s You are welcome to redistribute it under certain conditions.
804s Type 'license()' or 'licence()' for distribution details.
804s 
804s R is a collaborative project with many contributors.
804s Type 'contributors()' for more information and
804s 'citation()' on how to cite R or R packages in publications.
804s 
804s Type 'demo()' for some demos, 'help()' for on-line help, or
804s 'help.start()' for an HTML browser interface to help.
804s Type 'q()' to quit R.
804s 
804s > library("matrixStats")
804s > 
804s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
804s > # Subsetted tests
804s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
804s > source("utils/validateIndicesFramework.R")
804s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
804s > storage.mode(x) <- "integer"
804s > 
804s > # To check names attribute
804s > dimnames <- list(letters[1:6], LETTERS[1:6])
804s > 
804s > # Test with and without dimnames on x
804s > for (setDimnames in c(TRUE, FALSE)) {
804s +   if (setDimnames) dimnames(x) <- dimnames
804s +   else dimnames(x) <- NULL
804s +   
804s +   count <- 0L
804s +   for (rows in index_cases) {
804s +     for (cols in index_cases) {
804s +       count <- count + 1L
804s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
804s +       useNames <- useNames[count %% length(useNames) + 1]
804s +       
804s +       validateIndicesTestMatrix(x, rows, cols,
804s +                                 ftest = rowTabulates, fsure = rowTabulates, useNames = useNames)
804s +       validateIndicesTestMatrix(x, rows, cols,
804s +                                 ftest = rowTabulates, fsure = rowTabulates,
804s +                                 values = 1:3, useNames = useNames)
804s +   
804s +       validateIndicesTestMatrix(x, rows, cols,
804s +                                 ftest = colTabulates, fsure = colTabulates, useNames = useNames)
804s +       validateIndicesTestMatrix(x, rows, cols,
804s +                                 ftest = colTabulates, fsure = colTabulates,
804s +                                 values = 1:3, useNames = useNames)
804s +     }
804s +   }
804s + }
808s > 
808s 
808s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
808s Copyright (C) 2024 The R Foundation for Statistical Computing
808s Platform: arm-unknown-linux-gnueabihf (32-bit)
808s 
808s R is free software and comes with ABSOLUTELY NO WARRANTY.
808s You are welcome to redistribute it under certain conditions.
808s Type 'license()' or 'licence()' for distribution details.
808s 
808s R is a collaborative project with many contributors.
808s Type 'contributors()' for more information and
808s 'citation()' on how to cite R or R packages in publications.
808s 
808s Type 'demo()' for some demos, 'help()' for on-line help, or
808s 'help.start()' for an HTML browser interface to help.
808s Type 'q()' to quit R.
808s 
809s > library("matrixStats")
809s > 
809s > fcns <- list(
809s +   rowVarDiffs = list(rowVarDiffs, colVarDiffs),
809s +   rowSdDiffs  = list(rowSdDiffs, colSdDiffs),
809s +   rowMadDiffs = list(rowMadDiffs, colMadDiffs),
809s +   rowIQRDiffs = list(rowIQRDiffs, colIQRDiffs)
809s + )
809s > 
809s > for (fcn in names(fcns)) {
809s +   cat(sprintf("%s()...\n", fcn))
809s +   row_fcn <- fcns[[fcn]][[1L]]
809s +   col_fcn <- fcns[[fcn]][[2L]]
809s + 
809s +   # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
809s +   # With and without some NAs
809s +   # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
809s +   for (mode in c("integer", "double")) {
809s +     for (add_na in c(FALSE, TRUE)) {
809s +       cat("add_na = ", add_na, "\n", sep = "")
809s + 
809s +       x <- matrix(1:50 + 0.1, nrow = 10L, ncol = 5L)
809s +       if (add_na) {
809s +         x[3:7, c(2, 4)] <- NA_real_
809s +       }
809s +       cat("mode: ", mode, "\n", sep = "")
809s +       storage.mode(x) <- mode
809s +       str(x)
809s +       
809s +       # To check names attribute
809s +       dimnames <- list(letters[1:10], LETTERS[1:5])
809s + 
809s +       # Test with and without dimnames on x
809s +       for (setDimnames in c(TRUE, FALSE)) {
809s +         if (setDimnames) dimnames(x) <- dimnames
809s +         else dimnames(x) <- NULL
809s +         # Row/column ranges
809s +         for (na.rm in c(FALSE, TRUE)) {
809s +           # Check names attribute
809s +           for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
809s +             cat("na.rm = ", na.rm, "\n", sep = "")
809s +             r1 <- row_fcn(x, na.rm = na.rm, useNames = useNames)
809s +             r2 <- col_fcn(t(x), na.rm = na.rm, useNames = useNames)
809s +             stopifnot(all.equal(r1, r2))
809s +           }
809s +         }
809s +       }
809s +     } # for (add_na ...)
809s +   }
809s + 
809s + 
809s +   # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
809s +   # All NAs
809s +   # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
809s +   for (mode in c("integer", "double")) {
809s +     x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
809s +     cat("mode: ", mode, "\n", sep = "")
809s +     storage.mode(x) <- mode
809s +     str(x)
809s + 
809s +     # Test with and without dimnames on x
809s +     for (setDimnames in c(TRUE, FALSE)) {
809s +       if (setDimnames) dimnames(x) <- dimnames
809s +       else dimnames(x) <- NULL
809s +       # Row/column ranges
809s +       for (na.rm in c(FALSE, TRUE)) {
809s +         # Check names attribute
809s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
809s +           cat("na.rm = ", na.rm, "\n", sep = "")
809s +           r1 <- row_fcn(x, na.rm = na.rm, useNames = useNames)
809s +           r2 <- col_fcn(t(x), na.rm = na.rm, useNames = useNames)
809s +           stopifnot(all.equal(r1, r2))
809s +         }
809s +       }
809s +     }
809s +   }
809s + 
809s + 
809s +   # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
809s +   # A 1x1 matrix
809s +   # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
809s +   x <- matrix(0, nrow = 1L, ncol = 1L)
809s +   dimnames <- list("a", "A")
809s +   # Test with and without dimnames on x
809s +   for (setDimnames in c(TRUE, FALSE)) {
809s +     if (setDimnames) dimnames(x) <- dimnames
809s +     else dimnames(x) <- NULL
809s +     # Row/column ranges
809s +     for (na.rm in c(FALSE, TRUE)) {
809s +       # Check names attribute
809s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
809s +         cat("na.rm = ", na.rm, "\n", sep = "")
809s +         r1 <- row_fcn(x, na.rm = na.rm, useNames = useNames)
809s +         r2 <- col_fcn(t(x), na.rm = na.rm, useNames = useNames)
809s +         stopifnot(all.equal(r1, r2))
809s +       }
809s +     }
809s +   }
809s + 
809s +   cat(sprintf("%s()...DONE\n", fcn))
809s + } # for (fcn ...)
809s rowVarDiffs()...
809s add_na = FALSE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = FALSE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: integer
809s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: double
809s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s rowVarDiffs()...DONE
809s rowSdDiffs()...
809s add_na = FALSE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = FALSE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: integer
809s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: double
809s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s rowSdDiffs()...DONE
809s rowMadDiffs()...
809s add_na = FALSE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = FALSE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: integer
809s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: double
809s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s rowMadDiffs()...DONE
809s rowIQRDiffs()...
809s add_na = FALSE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: integer
809s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = FALSE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s add_na = TRUE
809s mode: double
809s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: integer
809s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s mode: double
809s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s na.rm = FALSE
809s na.rm = FALSE
809s na.rm = TRUE
809s na.rm = TRUE
809s rowIQRDiffs()...DONE
809s > 
810s 
810s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
810s Copyright (C) 2024 The R Foundation for Statistical Computing
810s Platform: arm-unknown-linux-gnueabihf (32-bit)
810s 
810s R is free software and comes with ABSOLUTELY NO WARRANTY.
810s You are welcome to redistribute it under certain conditions.
810s Type 'license()' or 'licence()' for distribution details.
810s 
810s R is a collaborative project with many contributors.
810s Type 'contributors()' for more information and
810s 'citation()' on how to cite R or R packages in publications.
810s 
810s Type 'demo()' for some demos, 'help()' for on-line help, or
810s 'help.start()' for an HTML browser interface to help.
810s Type 'q()' to quit R.
810s 
810s > library("matrixStats")
810s > 
810s > fcns <- list(
810s +   madDiff = c(rowMadDiffs, colMadDiffs),
810s +   iqrDiff = c(rowIQRDiffs, colIQRDiffs)
810s + )
810s > 
810s > 
810s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
810s > # Subsetted tests
810s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
810s > source("utils/validateIndicesFramework.R")
810s > # To check names attribute
810s > dimnames <- list(letters[1:6], LETTERS[1:6])
810s > trim <- runif(1, min = 0, max = 0.5)
810s > for (fcn in names(fcns)) {
810s +   cat(sprintf("subsetted tests on %s()...\n", fcn))
810s +   row_fcn <- fcns[[fcn]][[1L]]
810s +   col_fcn <- fcns[[fcn]][[2L]]
810s + 
810s +   for (mode in c("numeric", "integer")) {
810s +     x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6L, ncol = 6L)
810s +     storage.mode(x) <- mode
810s +     if (mode == "numeric") x[1:2, 3:4] <- Inf
810s + 
810s +     # Test with and without dimnames on x
810s +     for (setDimnames in c(TRUE, FALSE)) {
810s +       if (setDimnames) dimnames(x) <- dimnames
810s +       else dimnames(x) <- NULL
810s +       
810s +       count <- 0L
810s +       for (diff in 1:2) {
810s +         for (rows in index_cases) {
810s +           for (cols in index_cases) {
810s +             count <- count + 1L
810s +             na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
810s +             useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
810s +             useNames <- useNames[count %% length(useNames) + 1]
810s +             validateIndicesTestMatrix(x, rows, cols,
810s +                                       ftest = row_fcn, fsure = row_fcn,
810s +                                       na.rm = na.rm, diff = diff, trim = trim, useNames = useNames)
810s +             validateIndicesTestMatrix(x, rows, cols,
810s +                                       fcoltest = col_fcn, fsure = row_fcn,
810s +                                       na.rm = na.rm, diff = diff, trim = trim, useNames = useNames)
810s +           }
810s +         }
810s +       }
810s +     }
810s +   }
810s +   cat(sprintf("%s()...DONE\n", fcn))
810s + }
810s subsetted tests on madDiff()...
818s madDiff()...DONE
818s subsetted tests on iqrDiff()...
825s iqrDiff()...DONE
825s > 
825s 
825s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
825s Copyright (C) 2024 The R Foundation for Statistical Computing
825s Platform: arm-unknown-linux-gnueabihf (32-bit)
825s 
825s R is free software and comes with ABSOLUTELY NO WARRANTY.
825s You are welcome to redistribute it under certain conditions.
825s Type 'license()' or 'licence()' for distribution details.
825s 
825s R is a collaborative project with many contributors.
825s Type 'contributors()' for more information and
825s 'citation()' on how to cite R or R packages in publications.
825s 
825s Type 'demo()' for some demos, 'help()' for on-line help, or
825s 'help.start()' for an HTML browser interface to help.
825s Type 'q()' to quit R.
825s 
825s > library("matrixStats")
825s > 
825s > fcns <- list(
825s +   varDiff  = c(rowVarDiffs, colVarDiffs),
825s +   sdDiff   = c(rowSdDiffs, colSdDiffs)
825s + )
825s > 
825s > 
825s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
825s > # Subsetted tests
825s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
825s > source("utils/validateIndicesFramework.R")
825s > # To check names attribute
825s > dimnames <- list(letters[1:6], LETTERS[1:6])
825s > trim <- runif(1, min = 0, max = 0.5)
825s > for (fcn in names(fcns)) {
825s +   cat(sprintf("subsetted tests on %s()...\n", fcn))
825s +   row_fcn <- fcns[[fcn]][[1L]]
825s +   col_fcn <- fcns[[fcn]][[2L]]
825s + 
825s +   for (mode in c("numeric", "integer")) {
825s +     x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6L, ncol = 6L)
825s +     storage.mode(x) <- mode
825s +     if (mode == "numeric") x[1:2, 3:4] <- Inf
825s +   
825s +     # Test with and without dimnames on x
825s +     for (setDimnames in c(TRUE, FALSE)) {
825s +       if (setDimnames) dimnames(x) <- dimnames
825s +       else dimnames(x) <- NULL
825s + 
825s +       count <- 0L
825s +       for (diff in 1:2) {
825s +         for (rows in index_cases) {
825s +           for (cols in index_cases) {
825s +             count <- count + 1L
825s +             na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
825s +             useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
825s +             useNames <- useNames[count %% length(useNames) + 1]
825s +             
825s +             validateIndicesTestMatrix(x, rows, cols,
825s +                                       ftest = row_fcn, fsure = row_fcn,
825s +                                       na.rm = na.rm, diff = diff, trim = trim, useNames = useNames)
825s +             validateIndicesTestMatrix(x, rows, cols,
825s +                                       fcoltest = col_fcn, fsure = row_fcn,
825s +                                       na.rm = na.rm, diff = diff, trim = trim, useNames = useNames)
825s +           }
825s +         }
825s +       }
825s +     }
825s +   }
825s +   cat(sprintf("%s()...DONE\n", fcn))
825s + }
826s subsetted tests on varDiff()...
831s varDiff()...DONE
831s subsetted tests on sdDiff()...
836s sdDiff()...DONE
836s > 
836s 
836s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
836s Copyright (C) 2024 The R Foundation for Statistical Computing
836s Platform: arm-unknown-linux-gnueabihf (32-bit)
836s 
836s R is free software and comes with ABSOLUTELY NO WARRANTY.
836s You are welcome to redistribute it under certain conditions.
836s Type 'license()' or 'licence()' for distribution details.
836s 
836s R is a collaborative project with many contributors.
836s Type 'contributors()' for more information and
836s 'citation()' on how to cite R or R packages in publications.
836s 
836s Type 'demo()' for some demos, 'help()' for on-line help, or
836s 'help.start()' for an HTML browser interface to help.
836s Type 'q()' to quit R.
836s 
836s > library("matrixStats")
836s > 
836s > ## Always allow testing of the 'center' argument (as long as it's not defunct)
836s > options(matrixStats.center.onUse = "ignore")
836s > options(matrixStats.vars.formula.freq = Inf)
836s > 
836s > ## Create isFALSE() if running on an old version of R
836s > if (!exists("isFALSE", mode="function")) {
836s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
836s + }
836s > 
836s > rowVars_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
836s +   suppressWarnings({
836s +     res <- apply(x, MARGIN = 1L, FUN = var, na.rm = na.rm)
836s +   })
836s +   stopifnot(!any(is.infinite(res)))
836s +   
836s +   # Keep naming support consistency same as rowVars()
836s +   if (is.null(center) || ncol(x) <= 1L) {
836s +     if (is.na(useNames) || isFALSE(useNames)) names(res) <- NULL
836s +   }
836s +   else if (isFALSE(useNames)) names(res) <- NULL
836s +   res
836s + }
836s > 
836s > colVars_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
836s +   suppressWarnings({
836s +     res <- apply(x, MARGIN = 2L, FUN = var, na.rm = na.rm)
836s +   })
836s +   stopifnot(!any(is.infinite(res)))
836s +   
836s +   # Keep naming support consistency same as colVars()
836s +   if (is.null(center) || ncol(x) <= 1L) {
836s +     if (is.na(useNames) || isFALSE(useNames)) names(res) <- NULL
836s +   }
836s +   else if (isFALSE(useNames)) names(res) <- NULL
836s +   res
836s + }
836s > 
836s > 
836s > rowVars_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
836s +   center <- rowWeightedMeans(x, cols = cols, na.rm = na.rm, useNames = FALSE)
836s +   res <- rowVars(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
836s +   stopifnot(!any(is.infinite(res)))
836s +   res
836s + }
836s > 
836s > colVars_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
836s +   center <- colWeightedMeans(x, rows = rows, na.rm = na.rm, useNames = FALSE)
836s +   res <- colVars(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
836s +   stopifnot(!any(is.infinite(res)))
836s +   res
836s + }
836s > 
836s > rowVars_center_naive <- function(x, rows = NULL, cols = NULL, center = NULL, na.rm = FALSE, ..., useNames = NA) {
836s +   x <- sweep(x, MARGIN = 1, STATS = as.array(center), FUN = "-")
836s +   x[is.infinite(center), ] <- NaN
836s +   res <- rowVars(x, rows = rows, cols = cols, center = rep(0, times = nrow(x)), na.rm = na.rm, useNames = useNames)
836s +   stopifnot(!any(is.infinite(res)))
836s +   res
836s + }
836s > 
836s > colVars_center_naive <- function(x, rows = NULL, cols = NULL, center = NULL, na.rm = FALSE, ..., useNames = NA) {
836s +   x <- sweep(x, MARGIN = 2, STATS = as.array(center), FUN = "-")
836s +   x[, is.infinite(center)] <- NaN
836s +   res <- colVars(x, rows = rows, cols = cols, center = rep(0, times = ncol(x)), na.rm = na.rm, useNames = useNames)
836s +   stopifnot(!any(is.infinite(res)))
836s +   res
836s + }
836s > 
836s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
836s > # With and without some NAs or Infs
836s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
836s > for (mode in c("integer", "double")) {
836s +   if (mode == "integer") {
836s +     specials <- c(0L, NA_integer_)
836s +     delta <- 0L
836s +   } else {
836s +     specials <- c(0, NA_real_, Inf)
836s +     delta <- 0.1
836s +   }
836s +   
836s +   for (special in specials) {
836s +     cat("special = ", special, "\n", sep = "")
836s +     x <- matrix(1:50 + delta, nrow = 10L, ncol = 5L)
836s +     x[3:7, c(2, 4)] <- special
836s +     cat("mode: ", mode, "\n", sep = "")
836s +     str(x)
836s +     stopifnot(storage.mode(x) == mode)
836s +     
836s +     # To check names attribute
836s +     dimnames <- list(letters[1:10], LETTERS[1:5])
836s +     
836s +     # Test with and without dimnames on x
836s +     for (setDimnames in c(TRUE, FALSE)) {
836s +       if (setDimnames) dimnames(x) <- dimnames
836s +       else dimnames(x) <- NULL
836s +       # Row/column variance
836s +       for (na.rm in c(FALSE, TRUE)) {
836s +         # Check names attribute
836s +         for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
836s +           cat("na.rm = ", na.rm, "\n", sep = "")
836s +           center <- rowMeans(x, na.rm = na.rm)
836s +           
836s +           r0 <- rowVars_R(x, na.rm = na.rm, useNames = useNames)
836s +           r1 <- rowVars(x, na.rm = na.rm, useNames = useNames)
836s +           r1b <- rowVars_center(x, na.rm = na.rm, useNames = useNames)
836s +           r1c <- rowVars(x, center = center, na.rm = na.rm, useNames = useNames)
836s +           
836s +           tx <- t(x)
836s +           r2 <- colVars(tx, na.rm = na.rm, useNames = useNames)
836s +           r2b <- colVars_center(tx, na.rm = na.rm, useNames = useNames)
836s +           r2c <- colVars(tx, center = center, na.rm = na.rm, useNames = useNames)
836s +           tx <- NULL
836s +           
836s +           stopifnot(all.equal(r1, r2))
836s +           stopifnot(all.equal(r1, r0))
836s +           stopifnot(all.equal(r1b, r1c))
836s +           stopifnot(all.equal(r2, r0))
836s +           stopifnot(all.equal(r2b, r2c))
836s +           
836s +           center <- colMeans(x, na.rm = na.rm)
836s + 
836s +           r3 <- colVars(x, center = center, na.rm = na.rm, useNames = useNames)
836s +           r3b <- colVars_center_naive(x, center = center, na.rm = na.rm, useNames = useNames)
836s +           r3c <- rowVars(t(x), center = center, na.rm = na.rm, useNames = useNames)
836s +           r3d <- rowVars_center_naive(t(x), center = center, na.rm = na.rm, useNames = useNames)
836s +           stopifnot(all.equal(r3b, r3))
836s +           stopifnot(all.equal(r3c, r3))
836s +           stopifnot(all.equal(r3d, r3))
836s +           
836s +           stopifnot(
836s +             !any(is.infinite(r0)),
836s +             !any(is.infinite(r1)),
836s +             !any(is.infinite(r2)),
836s +             !any(is.infinite(r3)),
836s +             !any(is.infinite(r1b)),
836s +             !any(is.infinite(r1c)),
836s +             !any(is.infinite(r2b)),
836s +             !any(is.infinite(r2c)),
836s +             !any(is.infinite(r3b)),
836s +             !any(is.infinite(r3c)),
836s +             !any(is.infinite(r3d))
836s +           )
836s +         }
836s +       }
836s +     }
836s +   } # for (special ...)
836s + }
836s special = 0
836s mode: integer
836s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s special = NA
836s mode: integer
836s  int [1:10, 1:5] 1 2 3 4 5 6 7 8 9 10 ...
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s special = 0
836s mode: double
836s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s special = NA
836s mode: double
836s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s special = Inf
836s mode: double
836s  num [1:10, 1:5] 1.1 2.1 3.1 4.1 5.1 6.1 7.1 8.1 9.1 10.1 ...
836s na.rm = FALSE
836s na.rm = FALSE
836s na.rm = TRUE
836s na.rm = TRUE
836s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s > 
837s > 
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > # All NAs
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > for (mode in c("integer", "double")) {
837s +   x <- matrix(NA_real_, nrow = 10L, ncol = 5L)
837s +   cat("mode: ", mode, "\n", sep = "")
837s +   storage.mode(x) <- mode
837s +   str(x)
837s +   
837s +   # Test with and without dimnames on x
837s +   for (setDimnames in c(TRUE, FALSE)) {
837s +     if (setDimnames) dimnames(x) <- dimnames
837s +     else dimnames(x) <- NULL
837s +     # Row/column variance
837s +     for (na.rm in c(FALSE, TRUE)) {
837s +       # Check names attribute
837s +       for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
837s +         cat("na.rm = ", na.rm, "\n", sep = "")
837s +         
837s +         r0 <- rowVars_R(x, na.rm = na.rm, useNames = useNames)
837s +         r1 <- rowVars(x, na.rm = na.rm, useNames = useNames)
837s +         r1b <- rowVars_center(x, na.rm = na.rm, useNames = useNames)
837s +         r2 <- colVars(t(x), na.rm = na.rm, useNames = useNames)
837s +         r2b <- colVars_center(t(x), na.rm = na.rm, useNames = useNames)
837s +         stopifnot(all.equal(r1, r2))
837s +         stopifnot(all.equal(r1, r0))
837s +         stopifnot(all.equal(r2, r0))
837s +         stopifnot(all.equal(r1b, r2b))
837s +         stopifnot(
837s +           !any(is.infinite(r0)),
837s +           !any(is.infinite(r1)),
837s +           !any(is.infinite(r2)),
837s +           !any(is.infinite(r1b)),
837s +           !any(is.infinite(r2b))
837s +         )
837s +       }
837s +     }
837s +   }
837s + }
837s mode: integer
837s  int [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
837s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s mode: double
837s  num [1:10, 1:5] NA NA NA NA NA NA NA NA NA NA ...
837s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s > 
837s > 
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > # A 1x1 matrix
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > x <- matrix(0, nrow = 1L, ncol = 1L)
837s > dimnames <- list("a", "A")
837s > # Test with and without dimnames on x
837s > for (setDimnames in c(TRUE, FALSE)) {
837s +   if (setDimnames) dimnames(x) <- dimnames
837s +   else dimnames(x) <- NULL
837s +   # Row/column variance
837s +   for (na.rm in c(FALSE, TRUE)) {
837s +     # Check names attribute
837s +     for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
837s +       cat("na.rm = ", na.rm, "\n", sep = "")
837s +       
837s +       r0 <- rowVars_R(x, na.rm = na.rm, useNames = useNames)
837s +       r1 <- rowVars(x, na.rm = na.rm, useNames = useNames)
837s +       r1b <- rowVars_center(x, na.rm = na.rm, useNames = useNames)
837s +       r2 <- colVars(t(x), na.rm = na.rm, useNames = useNames)
837s +       r2b <- colVars_center(t(x), na.rm = na.rm, useNames = useNames)
837s +       stopifnot(all.equal(r1, r2))
837s +       stopifnot(all.equal(r1, r0))
837s +       stopifnot(all.equal(r2, r0))
837s +       stopifnot(all.equal(r1b, r2b))
837s +       stopifnot(
837s +         !any(is.infinite(r0)),
837s +         !any(is.infinite(r1)),
837s +         !any(is.infinite(r2)),
837s +         !any(is.infinite(r1b)),
837s +         !any(is.infinite(r2b))
837s +       )
837s +     }
837s +   }
837s + }
837s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s na.rm = FALSE
837s na.rm = FALSE
837s na.rm = TRUE
837s na.rm = TRUE
837s > 
837s > 
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > # center and .dim
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > m <- matrix(1:12, nrow = 3L, ncol = 4L)
837s > a <- array(m, dim = c(3, 2, 2))
837s > stopifnot(prod(dim(a)) == prod(dim(m)))
837s > 
837s > y0 <- rowVars(m, dim. = dim(m))
837s > print(y0)
837s [1] 15 15 15
837s > y1 <- rowVars(a, dim. = dim(m))
837s > print(y1)
837s [1] 15 15 15
837s > stopifnot(identical(y1, y0))
837s > stopifnot(
837s +   !any(is.infinite(y0)),
837s +   !any(is.infinite(y1))
837s + )
837s > 
837s > mu <- rowMeans(m)
837s > y0 <- rowVars(m, center = mu, dim. = dim(m))
837s > print(y0)
837s [1] 15 15 15
837s > y1 <- rowVars(a, center = mu, dim. = dim(m))
837s > print(y1)
837s [1] 15 15 15
837s > stopifnot(identical(y1, y0))
837s > stopifnot(
837s +   !any(is.infinite(y0)),
837s +   !any(is.infinite(y1))
837s + )
837s > 
837s > 
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > # Corner cases
837s > # https://github.com/HenrikBengtsson/matrixStats/issues/195
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > x <- matrix(c(1,2,3,4), nrow = 2L, ncol = 2L)
837s > x[1,1] <- NA_real_
837s > x[1,2] <- Inf
837s > 
837s > center <- colMeans2(x, na.rm = TRUE)
837s > y <- colVars(x, center = center, na.rm = TRUE)
837s > stopifnot(!any(is.infinite(y)))
837s > 
837s > x <- t(x)
837s > center <- rowMeans2(x, na.rm = TRUE)
837s > y <- rowVars(x, center = center, na.rm = TRUE)
837s > stopifnot(!any(is.infinite(y)))
837s > 
837s 
837s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
837s Copyright (C) 2024 The R Foundation for Statistical Computing
837s Platform: arm-unknown-linux-gnueabihf (32-bit)
837s 
837s R is free software and comes with ABSOLUTELY NO WARRANTY.
837s You are welcome to redistribute it under certain conditions.
837s Type 'license()' or 'licence()' for distribution details.
837s 
837s R is a collaborative project with many contributors.
837s Type 'contributors()' for more information and
837s 'citation()' on how to cite R or R packages in publications.
837s 
837s Type 'demo()' for some demos, 'help()' for on-line help, or
837s 'help.start()' for an HTML browser interface to help.
837s Type 'q()' to quit R.
837s 
837s > library("matrixStats")
837s > 
837s > ## Always allow testing of the 'center' argument (as long as it's not defunct)
837s > options(matrixStats.center.onUse = "ignore")
837s > 
837s > ## Create isFALSE() if running on an old version of R
837s > if (!exists("isFALSE", mode="function")) {
837s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
837s + }
837s > 
837s > rowVars_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
837s +   suppressWarnings({
837s +     res <- apply(x, MARGIN = 1L, FUN = var, na.rm = na.rm)
837s +   })
837s +   stopifnot(!any(is.infinite(res)))
837s +   
837s +   # Keep naming support consistency same as rowVars()
837s +   if (is.null(center) || ncol(x) <= 1L) {
837s +     if (is.na(useNames) || isFALSE(useNames)) names(res) <- NULL
837s +   }
837s +   else if (isFALSE(useNames)) names(res) <- NULL
837s +   res
837s + }
837s > 
837s > colVars_R <- function(x, na.rm = FALSE, center = NULL, ..., useNames = NA) {
837s +   suppressWarnings({
837s +     res <- apply(x, MARGIN = 2L, FUN = var, na.rm = na.rm)
837s +   })
837s +   stopifnot(!any(is.infinite(res)))
837s +   
837s +   # Keep naming support consistency same as colVars()
837s +   if (is.null(center) || nrow(x) <= 1L) {
837s +     if (is.na(useNames) || isFALSE(useNames)) names(res) <- NULL
837s +   }
837s +   else if (isFALSE(useNames)) names(res) <- NULL
837s +   res
837s + }
837s > 
837s > 
837s > rowVars_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
837s +   center <- rowWeightedMeans(x, cols = cols, na.rm = na.rm, useNames = FALSE)
837s +   res <- rowVars(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
837s +   stopifnot(!any(is.infinite(res)))
837s +   res
837s + }
837s > 
837s > colVars_center <- function(x, rows = NULL, cols = NULL, na.rm = FALSE, ..., useNames = NA) {
837s +   center <- colWeightedMeans(x, rows = rows, na.rm = na.rm, useNames = FALSE)
837s +   res <- colVars(x, rows = rows, cols = cols, center = center, na.rm = na.rm, useNames = useNames)
837s +   stopifnot(!any(is.infinite(res)))
837s +   res
837s + }
837s > 
837s > 
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > # Subsetted tests
837s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
837s > source("utils/validateIndicesFramework.R")
837s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
837s > storage.mode(x) <- "integer"
837s > 
837s > # To check names attribute
837s > dimnames <- list(letters[1:6], LETTERS[1:6])
837s > 
837s > # Test with and without dimnames on x
837s > for (setDimnames in c(TRUE, FALSE)) {
837s +   if (setDimnames) dimnames(x) <- dimnames
837s +   else dimnames(x) <- NULL
837s + 
837s +   count <- 0L
837s +   for (rows in index_cases) {
837s +     for (cols in index_cases) {
837s +       count <- count + 1L
837s +       na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
837s +       useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
837s +       useNames <- useNames[count %% length(useNames) + 1]
837s +       
837s +       validateIndicesTestMatrix(x, rows, cols,
837s +                                 ftest = rowVars, fsure = rowVars_R,
837s +                                 na.rm = na.rm, useNames = useNames)
837s +       validateIndicesTestMatrix(x, rows, cols,
837s +                                 ftest = rowVars_center, fsure = rowVars_R,
837s +                                 na.rm = na.rm, center = TRUE, useNames = useNames)
837s + 
837s +       validateIndicesTestMatrix(x, rows, cols,
837s +                                 fcoltest = colVars, fsure = rowVars_R,
837s +                                 na.rm = na.rm, useNames = useNames)
837s +       validateIndicesTestMatrix(x, rows, cols,
837s +                                 fcoltest = colVars_center, fsure = rowVars_R,
837s +                                 na.rm = na.rm, center = TRUE, useNames = useNames)
837s +     }
837s +   }
837s + }
840s > 
840s 
840s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
840s Copyright (C) 2024 The R Foundation for Statistical Computing
840s Platform: arm-unknown-linux-gnueabihf (32-bit)
840s 
840s R is free software and comes with ABSOLUTELY NO WARRANTY.
840s You are welcome to redistribute it under certain conditions.
840s Type 'license()' or 'licence()' for distribution details.
840s 
840s R is a collaborative project with many contributors.
840s Type 'contributors()' for more information and
840s 'citation()' on how to cite R or R packages in publications.
840s 
840s Type 'demo()' for some demos, 'help()' for on-line help, or
840s 'help.start()' for an HTML browser interface to help.
840s Type 'q()' to quit R.
840s 
840s > library("matrixStats")
840s > 
840s > ## Create isFALSE() if running on an old version of R
840s > if (!exists("isFALSE", mode="function")) {
840s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
840s + }
840s > 
840s > rowWeightedMeans_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
840s +   res <- apply(x, MARGIN = 1L, FUN = weighted.mean, w = w, na.rm = na.rm, ...)
840s +   
840s +   # Keep naming support consistency same as rowWeightedMeans()
840s +   idxs <- which(is.na(w) | w != 0)
840s +   nw <- length(idxs)
840s +   if (na.rm) na.rm <- anyMissing(x)
840s +   if ((!is.null(w) && nw == 0L) || isFALSE(na.rm)) {
840s +     if (is.na(useNames) || !useNames) names(res) <- NULL
840s +   }
840s +   else if (isFALSE(useNames)) names(res) <- NULL
840s +   
840s +   res
840s + }
840s > 
840s > colWeightedMeans_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
840s +   res <- apply(x, MARGIN = 2L, FUN = weighted.mean, w = w, na.rm = na.rm, ...)
840s +   
840s +   # Keep naming support consistency same as colWeightedMeans()
840s +   idxs <- which(is.na(w) | w != 0)
840s +   nw <- length(idxs)
840s +   if (!is.null(w) && nw == 0L) {
840s +     if (is.na(useNames) || !useNames) names(res) <- NULL
840s +   }
840s +   else if (isFALSE(useNames)) names(res) <- NULL
840s +   
840s +   res
840s + }
840s > 
840s > set.seed(1)
840s > 
840s > x <- matrix(rnorm(20), nrow = 5, ncol = 4)
840s > print(x)
840s            [,1]       [,2]       [,3]        [,4]
840s [1,] -0.6264538 -0.8204684  1.5117812 -0.04493361
840s [2,]  0.1836433  0.4874291  0.3898432 -0.01619026
840s [3,] -0.8356286  0.7383247 -0.6212406  0.94383621
840s [4,]  1.5952808  0.5757814 -2.2146999  0.82122120
840s [5,]  0.3295078 -0.3053884  1.1249309  0.59390132
840s > 
840s > # To check names attribute
840s > dimnames <- list(letters[1:5], LETTERS[1:4])
840s > 
840s > # Non-weighted row averages
840s > x_est0 <- rowMeans(x)
840s > x_est1 <- rowWeightedMeans(x)
840s > print(x_est1)
840s [1] 0.004981341 0.261181337 0.056322931 0.194395865 0.435737906
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x))
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Check names attribute
840s > dimnames(x) <- dimnames
840s > x_est1 <- rowWeightedMeans(x, useNames = FALSE)
840s > x_est2 <- colWeightedMeans(t(x), useNames = FALSE)
840s > stopifnot(all.equal(x_est1, x_est0))
840s > stopifnot(all.equal(x_est2, x_est0))
840s > x_est0 <- rowMeans(x)
840s > x_est1 <- rowWeightedMeans(x, useNames = TRUE)
840s > x_est2 <- colWeightedMeans(t(x), useNames = TRUE)
840s > stopifnot(all.equal(x_est1, x_est0))
840s > stopifnot(all.equal(x_est2, x_est0))
840s > dimnames(x) <- NULL
840s > 
840s > 
840s > # Weighted row averages (uniform weights)
840s > w <- rep(2.5, times = ncol(x))
840s > x_est0 <- rowMeans(x)
840s > x_est1 <- rowWeightedMeans(x, w = w)
840s > print(x_est1)
840s [1] 0.004981341 0.261181337 0.056322931 0.194395865 0.435737906
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x), w = w)
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > # Weighted row averages (excluding some columns)
840s > w <- c(1, 1, 0, 1)
840s > x_est0 <- rowMeans(x[, (w == 1), drop = FALSE])
840s > x_est1 <- rowWeightedMeans(x, w = w)
840s > print(x_est1)
840s [1] -0.4972853  0.2182940  0.2821774  0.9974278  0.2060069
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x), w = w)
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > # Weighted row averages (excluding some columns)
840s > w <- c(0, 1, 0, 0)
840s > x_est0 <- rowMeans(x[, (w == 1), drop = FALSE])
840s > x_est1 <- rowWeightedMeans(x, w = w)
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x), w = w)
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > # Weighted row averages (all zero weights)
840s > w <- c(0, 0, 0, 0)
840s > x_est0 <- rowMeans(x[, (w == 1), drop = FALSE])
840s > x_est1 <- rowWeightedMeans(x, w = w)
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x), w = w)
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > # Weighted averages by rows and columns
840s > w <- 1:4
840s > x_est1 <- rowWeightedMeans(x, w = w)
840s > print(x_est1)
840s [1]  0.20882185  0.22632701  0.25526439 -0.06123714  0.54691290
840s > x_est2 <- colWeightedMeans(t(x), w = w)
840s > stopifnot(all.equal(x_est2, x_est1))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > x[sample(length(x), size = 0.3 * length(x))] <- NA
840s > print(x)
840s            [,1]      [,2]       [,3]        [,4]
840s [1,] -0.6264538        NA  1.5117812 -0.04493361
840s [2,]  0.1836433        NA         NA -0.01619026
840s [3,] -0.8356286 0.7383247 -0.6212406  0.94383621
840s [4,]  1.5952808        NA -2.2146999  0.82122120
840s [5,]  0.3295078        NA         NA  0.59390132
840s > 
840s > # Non-weighted row averages with missing values
840s > x_est0 <- rowMeans(x, na.rm = TRUE)
840s > x_est1 <- rowWeightedMeans(x, na.rm = TRUE)
840s > print(x_est1)
840s [1] 0.28013125 0.08372653 0.05632293 0.06726737 0.46170455
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x), na.rm = TRUE)
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Check names attribute
840s > dimnames(x) <- dimnames
840s > x_est1 <- rowWeightedMeans(x, na.rm = TRUE, useNames = FALSE)
840s > x_est2 <- colWeightedMeans(t(x), na.rm = TRUE, useNames = FALSE)
840s > stopifnot(all.equal(x_est1, x_est0))
840s > stopifnot(all.equal(x_est2, x_est0))
840s > x_est0 <- rowMeans(x, na.rm = TRUE)
840s > x_est1 <- rowWeightedMeans(x, na.rm = TRUE, useNames = TRUE)
840s > x_est2 <- colWeightedMeans(t(x), na.rm = TRUE, useNames = TRUE)
840s > stopifnot(all.equal(x_est1, x_est0))
840s > stopifnot(all.equal(x_est2, x_est0))
840s > dimnames(x) <- NULL
840s > 
840s > 
840s > # Weighted row averages with missing values
840s > x_est0 <- apply(x, MARGIN = 1L, FUN = weighted.mean, w = w, na.rm = TRUE)
840s > print(x_est0)
840s [1]  0.46614441  0.02377645  0.25526439 -0.22049176  0.54102261
840s > x_est1 <- rowWeightedMeans(x, w = w, na.rm = TRUE)
840s > print(x_est1)
840s [1]  0.46614441  0.02377645  0.25526439 -0.22049176  0.54102261
840s > stopifnot(all.equal(x_est1, x_est0))
840s > x_est2 <- colWeightedMeans(t(x), w = w, na.rm = TRUE)
840s > stopifnot(all.equal(x_est2, x_est0))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, na.rm = TRUE, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, na.rm = TRUE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, na.rm = TRUE, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, na.rm = TRUE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > # Weighted averages by rows and columns
840s > w <- 1:4
840s > x_est1 <- rowWeightedMeans(x, w = w, na.rm = TRUE)
840s > x_est2 <- colWeightedMeans(t(x), w = w, na.rm = TRUE)
840s > stopifnot(all.equal(x_est2, x_est1))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, na.rm = TRUE, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, na.rm = TRUE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, na.rm = TRUE, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, na.rm = TRUE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > 
840s > # w contains missing value
840s > w[1] <- NA_integer_
840s > x_est1 <- rowWeightedMeans(x, w = w, na.rm = TRUE)
840s > x_est2 <- colWeightedMeans(t(x), w = w, na.rm = TRUE)
840s > stopifnot(all.equal(x_est2, x_est1))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, na.rm = TRUE, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, na.rm = TRUE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, na.rm = TRUE, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, na.rm = TRUE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s > x_est1 <- rowWeightedMeans(x, w = w, na.rm = FALSE)
840s > x_est2 <- colWeightedMeans(t(x), w = w, na.rm = FALSE)
840s > stopifnot(all.equal(x_est2, x_est1))
840s > # Test with and without dimnames on x
840s > for (setDimnames in c(TRUE, FALSE)) {
840s +   if (setDimnames) dimnames(x) <- dimnames
840s +   else dimnames(x) <- NULL    
840s +   # Check names attribute
840s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
840s +     x_est0 <- rowWeightedMeans_R(x, w = w, na.rm = FALSE, useNames = useNames)
840s +     x_est1 <- rowWeightedMeans(x, w = w, na.rm = FALSE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +     x_est0 <- colWeightedMeans_R(t(x), w = w, na.rm = FALSE, useNames = useNames)
840s +     x_est1 <- colWeightedMeans(t(x), w = w, na.rm = FALSE, useNames = useNames)
840s +     stopifnot(all.equal(x_est1, x_est0))
840s +   }
840s + }
840s > 
840s 
840s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
840s Copyright (C) 2024 The R Foundation for Statistical Computing
840s Platform: arm-unknown-linux-gnueabihf (32-bit)
840s 
840s R is free software and comes with ABSOLUTELY NO WARRANTY.
840s You are welcome to redistribute it under certain conditions.
840s Type 'license()' or 'licence()' for distribution details.
840s 
840s R is a collaborative project with many contributors.
840s Type 'contributors()' for more information and
840s 'citation()' on how to cite R or R packages in publications.
840s 
840s Type 'demo()' for some demos, 'help()' for on-line help, or
840s 'help.start()' for an HTML browser interface to help.
840s Type 'q()' to quit R.
840s 
841s > library("matrixStats")
841s > 
841s > ## Create isFALSE() if running on an old version of R
841s > if (!exists("isFALSE", mode="function")) {
841s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
841s + }
841s > 
841s > rowWeightedMeans_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
841s +   res <- apply(x, MARGIN = 1L, FUN = weighted.mean, w = w, na.rm = na.rm, ...)
841s +   
841s +   # Keep naming support consistency same as rowWeightedMeans()
841s +   idxs <- which(is.na(w) | w != 0)
841s +   nw <- length(idxs)
841s +   if (na.rm) na.rm <- anyMissing(x)
841s +   if ((!is.null(w) && nw == 0L) || isFALSE(na.rm)) {
841s +     if (is.na(useNames) || !useNames) names(res) <- NULL
841s +   }
841s +   else if (isFALSE(useNames)) names(res) <- NULL
841s +   
841s +   res
841s + }
841s > 
841s > colWeightedMeans_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
841s +   res <- apply(x, MARGIN = 1L, FUN = weighted.mean, w = w, na.rm = na.rm, ...)
841s +   
841s +   # Keep naming support consistency same as colWeightedMeans()
841s +   idxs <- which(is.na(w) | w != 0)
841s +   nw <- length(idxs)
841s +   if (!is.null(w) && nw == 0L) {
841s +     if (is.na(useNames) || !useNames) names(res) <- NULL
841s +   }
841s +   else if (isFALSE(useNames)) names(res) <- NULL
841s +   
841s +   res
841s + }
841s > 
841s > 
841s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
841s > # Subsetted tests
841s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
841s > source("utils/validateIndicesFramework.R")
841s > # To check names attribute
841s > dimnames <- list(letters[1:6], LETTERS[1:6])
841s > for (mode in c("numeric", "integer", "logical")) {
841s +   x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
841s +   w <- runif(6, min = 0, max = 6)
841s +   storage.mode(x) <- mode
841s +   storage.mode(w) <- if (mode == "logical") "integer" else mode
841s +   if (mode == "numeric") w[1] <- Inf
841s + 
841s +   # Test with and without dimnames on x
841s +   for (setDimnames in c(TRUE, FALSE)) {
841s +     if (setDimnames) dimnames(x) <- dimnames
841s +     else dimnames(x) <- NULL
841s + 
841s +     count <- 0L
841s +     for (rows in index_cases) {
841s +       for (cols in index_cases) {
841s +         count <- count + 1L
841s +         na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
841s +         useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
841s +         useNames <- useNames[count %% length(useNames) + 1]
841s + 
841s +         validateIndicesTestMatrix_w(x, w, rows, cols, 
841s +                                     ftest = rowWeightedMeans, fsure = rowWeightedMeans_R,
841s +                                     na.rm = na.rm, useNames = useNames)
841s +         validateIndicesTestMatrix_w(x, w, rows, cols,
841s +                                     fcoltest = colWeightedMeans, fsure = colWeightedMeans_R,
841s +                                     na.rm = na.rm, useNames = useNames)
841s +       }
841s +     }
841s +   }
841s + }
844s > 
844s 
844s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
844s Copyright (C) 2024 The R Foundation for Statistical Computing
844s Platform: arm-unknown-linux-gnueabihf (32-bit)
844s 
844s R is free software and comes with ABSOLUTELY NO WARRANTY.
844s You are welcome to redistribute it under certain conditions.
844s Type 'license()' or 'licence()' for distribution details.
844s 
844s R is a collaborative project with many contributors.
844s Type 'contributors()' for more information and
844s 'citation()' on how to cite R or R packages in publications.
844s 
844s Type 'demo()' for some demos, 'help()' for on-line help, or
844s 'help.start()' for an HTML browser interface to help.
844s Type 'q()' to quit R.
844s 
844s > library("matrixStats")
844s > 
844s > ## Create isFALSE() if running on an old version of R
844s > if (!exists("isFALSE", mode="function")) {
844s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
844s + }
844s > 
844s > rowWeightedMedians_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
844s +   res <- apply(x, MARGIN = 1L, FUN = weightedMedian, w = w, na.rm = na.rm, ...)
844s +   
844s +   # Keep naming support consistency same as rowWeightedMedians()
844s +   if (!is.null(w)) {
844s +     if (isFALSE(useNames)) names(res) <- NULL
844s +   }
844s +   else if (is.na(useNames) || !useNames) names(res) <- NULL
844s +   
844s +   res
844s + }
844s > 
844s > colWeightedMedians_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
844s +   res <- apply(x, MARGIN = 2L, FUN = weightedMedian, w = w, na.rm = na.rm, ...)
844s +   
844s +   # Keep naming support consistency same as colWeightedMedians()
844s +   if (!is.null(w)) {
844s +     if (isFALSE(useNames)) names(res) <- NULL
844s +   }
844s +   else if (is.na(useNames) || !useNames) names(res) <- NULL
844s +   
844s +   res
844s + }
844s > 
844s > set.seed(1)
844s > 
844s > x <- matrix(rnorm(20), nrow = 5, ncol = 4)
844s > print(x)
844s            [,1]       [,2]       [,3]        [,4]
844s [1,] -0.6264538 -0.8204684  1.5117812 -0.04493361
844s [2,]  0.1836433  0.4874291  0.3898432 -0.01619026
844s [3,] -0.8356286  0.7383247 -0.6212406  0.94383621
844s [4,]  1.5952808  0.5757814 -2.2146999  0.82122120
844s [5,]  0.3295078 -0.3053884  1.1249309  0.59390132
844s > 
844s > # To check names attribute
844s > dimnames <- list(letters[1:5], LETTERS[1:4])
844s > 
844s > # Non-weighted row medians
844s > x_est0 <- rowMedians(x)
844s > x_est1 <- rowWeightedMedians(x)
844s > stopifnot(all.equal(x_est1, x_est0))
844s > x_est2 <- colWeightedMedians(t(x))
844s > stopifnot(all.equal(x_est2, x_est0))
844s > # Test with and without dimnames on x
844s > for (setDimnames in c(TRUE, FALSE)) {
844s +   if (setDimnames) dimnames(x) <- dimnames
844s +   else dimnames(x) <- NULL
844s +   # Check names attribute
844s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
844s +     x_est0 <- rowMedians(x, useNames = useNames)
844s +     x_est1 <- rowWeightedMedians(x, useNames = useNames)
844s +     x_est2 <- colWeightedMedians(t(x), useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +     stopifnot(all.equal(x_est2, x_est0))
844s +   }
844s + }
844s > 
844s > 
844s > # Weighted row medians (uniform weights)
844s > w <- rep(2.5, times = ncol(x))
844s > x_est0 <- rowMedians(x)
844s > x_est1 <- rowWeightedMedians(x, w = w)
844s > stopifnot(all.equal(x_est1, x_est0))
844s > x_est2 <- colWeightedMedians(t(x), w = w)
844s > stopifnot(all.equal(x_est2, x_est0))
844s > # Test with and without dimnames on x
844s > for (setDimnames in c(TRUE, FALSE)) {
844s +   if (setDimnames) dimnames(x) <- dimnames
844s +   else dimnames(x) <- NULL    
844s +   # Check names attribute
844s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
844s +     x_est0 <- rowWeightedMedians_R(x, w = w, useNames = useNames)
844s +     x_est1 <- rowWeightedMedians(x, w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +     x_est0 <- colWeightedMedians_R(t(x), w = w, useNames = useNames)
844s +     x_est1 <- colWeightedMedians(t(x), w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +   }
844s + }
844s > 
844s > 
844s > # Weighted row medians (excluding some columns)
844s > w <- c(1, 1, 0, 1)
844s > x_est0 <- rowMedians(x[, (w == 1), drop = FALSE])
844s > x_est1 <- rowWeightedMedians(x, w = w)
844s > stopifnot(all.equal(x_est1, x_est0))
844s > x_est2 <- colWeightedMedians(t(x), w = w)
844s > stopifnot(all.equal(x_est2, x_est0))
844s > # Test with and without dimnames on x
844s > for (setDimnames in c(TRUE, FALSE)) {
844s +   if (setDimnames) dimnames(x) <- dimnames
844s +   else dimnames(x) <- NULL    
844s +   # Check names attribute
844s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
844s +     x_est0 <- rowWeightedMedians_R(x, w = w, useNames = useNames)
844s +     x_est1 <- rowWeightedMedians(x, w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +     x_est0 <- colWeightedMedians_R(t(x), w = w, useNames = useNames)
844s +     x_est1 <- colWeightedMedians(t(x), w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +   }
844s + }
844s > 
844s > # Weighted row medians (excluding some columns)
844s > w <- c(0, 1, 0, 0)
844s > x_est0 <- rowMedians(x[, (w == 1), drop = FALSE])
844s > x_est1 <- rowWeightedMedians(x, w = w)
844s > stopifnot(all.equal(x_est1, x_est0))
844s > x_est2 <- colWeightedMedians(t(x), w = w)
844s > stopifnot(all.equal(x_est2, x_est0))
844s > # Test with and without dimnames on x
844s > for (setDimnames in c(TRUE, FALSE)) {
844s +   if (setDimnames) dimnames(x) <- dimnames
844s +   else dimnames(x) <- NULL    
844s +   # Check names attribute
844s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
844s +     x_est0 <- rowWeightedMedians_R(x, w = w, useNames = useNames)
844s +     x_est1 <- rowWeightedMedians(x, w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +     x_est0 <- colWeightedMedians_R(t(x), w = w, useNames = useNames)
844s +     x_est1 <- colWeightedMedians(t(x), w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +   }
844s + }
844s > 
844s > # Weighted row medians (all zero weights)
844s > w <- c(0, 0, 0, 0)
844s > x_est0 <- rowMedians(x[, (w == 1), drop = FALSE])
844s > x_est1 <- rowWeightedMedians(x, w = w)
844s > stopifnot(all.equal(x_est1, x_est0))
844s > x_est2 <- colWeightedMedians(t(x), w = w)
844s > stopifnot(all.equal(x_est2, x_est0))
844s > # Test with and without dimnames on x
844s > for (setDimnames in c(TRUE, FALSE)) {
844s +   if (setDimnames) dimnames(x) <- dimnames
844s +   else dimnames(x) <- NULL    
844s +   # Check names attribute
844s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
844s +     x_est0 <- rowWeightedMedians_R(x, w = w, useNames = useNames)
844s +     x_est1 <- rowWeightedMedians(x, w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +     x_est0 <- colWeightedMedians_R(t(x), w = w, useNames = useNames)
844s +     x_est1 <- colWeightedMedians(t(x), w = w, useNames = useNames)
844s +     stopifnot(all.equal(x_est1, x_est0))
844s +   }
844s + }
845s > 
845s > # Weighted medians by rows and columns
845s > w <- 1:4
845s > x_est1 <- rowWeightedMedians(x, w = w)
845s > x_est2 <- colWeightedMedians(t(x), w = w)
845s > stopifnot(all.equal(x_est2, x_est1))
845s > # Test with and without dimnames on x
845s > for (setDimnames in c(TRUE, FALSE)) {
845s +   if (setDimnames) dimnames(x) <- dimnames
845s +   else dimnames(x) <- NULL    
845s +   # Check names attribute
845s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
845s +     x_est0 <- rowWeightedMedians_R(x, w = w, useNames = useNames)
845s +     x_est1 <- rowWeightedMedians(x, w = w, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +     x_est0 <- colWeightedMedians_R(t(x), w = w, useNames = useNames)
845s +     x_est1 <- colWeightedMedians(t(x), w = w, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +   }
845s + }
845s > 
845s > 
845s > # Weighted row medians with missing values
845s > x_est0 <- apply(x, MARGIN = 1L, FUN = weightedMedian, w = w, na.rm = TRUE)
845s > print(x_est0)
845s [1] -0.04493361  0.23519330  0.73832471  0.65759463  0.59390132
845s > x_est1 <- rowWeightedMedians(x, w = w, na.rm = TRUE)
845s > print(x_est1)
845s [1] -0.04493361  0.23519330  0.73832471  0.65759463  0.59390132
845s > stopifnot(all.equal(x_est1, x_est0))
845s > x_est2 <- colWeightedMedians(t(x), w = w)
845s > stopifnot(all.equal(x_est2, x_est0))
845s > # Test with and without dimnames on x
845s > for (setDimnames in c(TRUE, FALSE)) {
845s +   if (setDimnames) dimnames(x) <- dimnames
845s +   else dimnames(x) <- NULL    
845s +   # Check names attribute
845s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
845s +     x_est0 <- rowWeightedMedians_R(x, w = w, na.rm = TRUE, useNames = useNames)
845s +     x_est1 <- rowWeightedMedians(x, w = w, na.rm = TRUE, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +     x_est0 <- colWeightedMedians_R(t(x), w = w, na.rm = TRUE, useNames = useNames)
845s +     x_est1 <- colWeightedMedians(t(x), w = w, na.rm = TRUE, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +   }
845s + }
845s > 
845s > # Weighted medians by rows and columns
845s > w <- 1:4
845s > x_est1 <- rowWeightedMedians(x, w = w, na.rm = TRUE)
845s > x_est2 <- colWeightedMedians(t(x), w = w, na.rm = TRUE)
845s > stopifnot(all.equal(x_est2, x_est1))
845s > # Test with and without dimnames on x
845s > for (setDimnames in c(TRUE, FALSE)) {
845s +   if (setDimnames) dimnames(x) <- dimnames
845s +   else dimnames(x) <- NULL    
845s +   # Check names attribute
845s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
845s +     x_est0 <- rowWeightedMedians_R(x, w = w, na.rm = TRUE, useNames = useNames)
845s +     x_est1 <- rowWeightedMedians(x, w = w, na.rm = TRUE, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +     x_est0 <- colWeightedMedians_R(t(x), w = w, na.rm = TRUE, useNames = useNames)
845s +     x_est1 <- colWeightedMedians(t(x), w = w, na.rm = TRUE, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +   }
845s + }
845s > 
845s > 
845s > # Inf weight
845s > x <- matrix(1:2, nrow = 1, ncol = 2)
845s > w <- c(7, Inf)
845s > x_est1 <- rowWeightedMedians(x, w = w)
845s > x_est2 <- colWeightedMedians(t(x), w = w)
845s > stopifnot(identical(2, x_est1))
845s > stopifnot(identical(2, x_est2))
845s > # Test with and without dimnames on x
845s > dimnames <- list("a", LETTERS[1:2])
845s > for (setDimnames in c(TRUE, FALSE)) {
845s +   if (setDimnames) dimnames(x) <- dimnames
845s +   else dimnames(x) <- NULL    
845s +   # Check names attribute
845s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
845s +     x_est0 <- rowWeightedMedians_R(x, w = w, useNames = useNames)
845s +     x_est1 <- rowWeightedMedians(x, w = w, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +     x_est0 <- colWeightedMedians_R(t(x), w = w, useNames = useNames)
845s +     x_est1 <- colWeightedMedians(t(x), w = w, useNames = useNames)
845s +     stopifnot(all.equal(x_est1, x_est0))
845s +   }
845s + }
845s > 
845s 
845s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
845s Copyright (C) 2024 The R Foundation for Statistical Computing
845s Platform: arm-unknown-linux-gnueabihf (32-bit)
845s 
845s R is free software and comes with ABSOLUTELY NO WARRANTY.
845s You are welcome to redistribute it under certain conditions.
845s Type 'license()' or 'licence()' for distribution details.
845s 
845s R is a collaborative project with many contributors.
845s Type 'contributors()' for more information and
845s 'citation()' on how to cite R or R packages in publications.
845s 
845s Type 'demo()' for some demos, 'help()' for on-line help, or
845s 'help.start()' for an HTML browser interface to help.
845s Type 'q()' to quit R.
845s 
845s > library("matrixStats")
845s > 
845s > ## Create isFALSE() if running on an old version of R
845s > if (!exists("isFALSE", mode="function")) {
845s +   isFALSE <- function(x) is.logical(x) && length(x) == 1L && !is.na(x) && !x
845s + }
845s > 
845s > rowWeightedMedians_R <- function(x, w, na.rm = FALSE, ..., useNames = NA) {
845s +   res <- apply(x, MARGIN = 1L, FUN = weightedMedian, w = w, na.rm = na.rm, ...)
845s +   
845s +   # Keep naming support consistency same as rowWeightedMedians()
845s +   if (!is.null(w)) {
845s +     if (isFALSE(useNames)) names(res) <- NULL
845s +   }
845s +   else if (is.na(useNames) || !useNames) names(res) <- NULL
845s +   
845s +   res
845s + }
845s > 
845s > 
845s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
845s > # Subsetted tests
845s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
845s > source("utils/validateIndicesFramework.R")
845s > # To check names attribute
845s > dimnames <- list(letters[1:6], LETTERS[1:6])
845s > for (mode in c("numeric", "integer", "logical")) {
845s +   x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
845s +   w <- runif(6, min = 0, max = 6)
845s +   storage.mode(x) <- mode
845s +   storage.mode(w) <- if (mode == "logical") "integer" else mode
845s +   if (mode == "numeric") w[1] <- Inf
845s + 
845s +   # Test with and without dimnames on x
845s +   for (setDimnames in c(TRUE, FALSE)) {
845s +     if (setDimnames) dimnames(x) <- dimnames
845s +     else dimnames(x) <- NULL
845s + 
845s +     count <- 0L
845s +     for (rows in index_cases) {
845s +       for (cols in index_cases) {
845s +         count <- count + 1L
845s +         na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
845s +         useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
845s +         useNames <- useNames[count %% length(useNames) + 1]
845s + 
845s +         validateIndicesTestMatrix_w(x, w, rows, cols,
845s +                                     ftest = rowWeightedMedians,
845s +                                     fsure = rowWeightedMedians_R,
845s +                                     na.rm = na.rm, useNames = useNames)
845s +         validateIndicesTestMatrix_w(x, w, rows, cols,
845s +                                     fcoltest = colWeightedMedians,
845s +                                     fsure = rowWeightedMedians_R,
845s +                                     na.rm = na.rm, useNames = useNames)
845s +       }
845s +     }
845s +   }
845s + }
856s > Doubles:
856s Integers:
857s Warning in sum2(x[1:2]) :
857s   Integer overflow. Use sum2(..., mode = "double") to avoid this.
857s Warning in sum2(x, mode = "integer") :
857s   sum2(x, mode = "integer") called with typeof(x) == "double"; did you mean to use as.integer(sum2(x))?
866s 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > 
866s > set.seed(1)
866s > 
866s > x <- matrix(rnorm(20), nrow = 5L, ncol = 4L)
866s > print(x)
866s            [,1]       [,2]       [,3]        [,4]
866s [1,] -0.6264538 -0.8204684  1.5117812 -0.04493361
866s [2,]  0.1836433  0.4874291  0.3898432 -0.01619026
866s [3,] -0.8356286  0.7383247 -0.6212406  0.94383621
866s [4,]  1.5952808  0.5757814 -2.2146999  0.82122120
866s [5,]  0.3295078 -0.3053884  1.1249309  0.59390132
866s > 
866s > # To check names attribute
866s > dimnames <- list(letters[1:5], LETTERS[1:4])
866s > 
866s > # Weighted row variances (uniform weights - all w = 1)
866s > # Non-weighted row variances
866s > x_est0 <- rowVars(x)
866s > w <- rep(1, times = ncol(x))
866s > x_est1 <- rowWeightedVars(x, w = w)
866s > print(x_est1)
866s [1] 1.11767161 0.05022969 0.83582537 2.76819528 0.35351857
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedVars(t(x), w = w)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = FALSE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowVars(x, useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedVars(x, w = w, useNames = NA)
866s +   x_est2 <- colWeightedVars(t(x), w = w, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = TRUE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > 
866s > # Weighted row variances (uniform weights - all w = 3)
866s > x3 <- cbind(x, x, x)
866s > x_est0 <- rowVars(x3)
866s > w <- rep(3, times = ncol(x))
866s > x_est1 <- rowWeightedVars(x, w = w)
866s > print(x_est1)
866s [1] 0.91445859 0.04109702 0.68385712 2.26488705 0.28924246
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedVars(t(x), w = w)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = FALSE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x3 <- cbind(x, x, x)
866s > x_est0 <- rowVars(x3, useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedVars(x, w = w, useNames = NA)
866s +   x_est2 <- colWeightedVars(t(x), w = w, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = TRUE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > 
866s > # Weighted row variances (excluding some columns)
866s > w <- c(1, 1, 0, 1)
866s > x_est0 <- rowVars(x[, (w == 1), drop = FALSE])
866s > x_est1 <- rowWeightedVars(x, w = w)
866s > print(x_est1)
866s [1] 0.16287693 0.06430861 0.94767651 0.28313135 0.21361984
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedVars(t(x), w = w)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = FALSE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowVars(x[, (w == 1), drop = FALSE], useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedVars(x, w = w, useNames = NA)
866s +   x_est2 <- colWeightedVars(t(x), w = w, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = TRUE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > 
866s > # Weighted row variances (excluding some columns)
866s > w <- c(0, 1, 0, 0)
866s > x_est0 <- rowVars(x[, (w == 1), drop = FALSE])
866s > x_est1 <- rowWeightedVars(x, w = w)
866s > #stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedVars(t(x), w = w)
866s > stopifnot(all.equal(x_est2, x_est1))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = FALSE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowVars(x[, (w == 1), drop = FALSE], useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedVars(x, w = w, useNames = NA)
866s +   x_est2 <- colWeightedVars(t(x), w = w, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = TRUE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > 
866s > # Weighted row variances (all zero weights)
866s > w <- c(0, 0, 0, 0)
866s > x_est0 <- rowVars(x[, (w == 1), drop = FALSE])
866s > x_est1 <- rowWeightedVars(x, w = w)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedVars(t(x), w = w)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = FALSE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowVars(x[, (w == 1), drop = FALSE], useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedVars(x, w = w, useNames = NA)
866s +   x_est2 <- colWeightedVars(t(x), w = w, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }
866s > x_est1 <- rowWeightedVars(x, w = w, useNames = TRUE)
866s > x_est2 <- colWeightedVars(t(x), w = w, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > # Weighted variances by rows and columns
866s > w <- 1:4
866s > # Test with and without dimnames on x
866s > for (setDimnames in c(TRUE, FALSE)) {
866s +   if (setDimnames) dimnames(x) <- dimnames
866s +   else dimnames(x) <- NULL    
866s +   # Check names attribute
866s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
866s +     x_est1 <- rowWeightedVars(x, w = w, useNames = useNames)
866s +     print(x_est1)
866s +     x_est2 <- colWeightedVars(t(x), w = w, useNames = useNames)
866s +     stopifnot(all.equal(x_est2, x_est1))
866s +   }
866s + }
866s          a          b          c          d          e 
866s 0.90747094 0.05040463 0.65089440 2.28697479 0.27902734 
866s [1] 0.90747094 0.05040463 0.65089440 2.28697479 0.27902734
866s [1] 0.90747094 0.05040463 0.65089440 2.28697479 0.27902734
866s [1] 0.90747094 0.05040463 0.65089440 2.28697479 0.27902734
866s > 
866s > 
866s > x[sample(length(x), size = 0.3 * length(x))] <- NA
866s > print(x)
866s            [,1]      [,2]       [,3]        [,4]
866s [1,] -0.6264538        NA  1.5117812 -0.04493361
866s [2,]  0.1836433        NA         NA -0.01619026
866s [3,] -0.8356286 0.7383247 -0.6212406  0.94383621
866s [4,]  1.5952808        NA -2.2146999  0.82122120
866s [5,]  0.3295078        NA         NA  0.59390132
866s > 
866s > # Non-weighted row variances with missing values
866s > x_est0 <- rowVars(x, na.rm = TRUE)
866s > x_est1 <- rowWeightedVars(x, w = rep(1, times = ncol(x)), na.rm = TRUE)
866s > print(x_est1)
866s [1] 1.22226258 0.01996673 0.83582537 4.05532299 0.03495197
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedVars(t(x), w = rep(1, times = ncol(x)), na.rm = TRUE)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedVars(x, w = rep(1, times = ncol(x)), na.rm = TRUE, useNames = FALSE)
866s > x_est2 <- colWeightedVars(t(x), w = rep(1, times = ncol(x)), na.rm = TRUE, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowVars(x, na.rm = TRUE, useNames = TRUE)
866s > x_est1 <- rowWeightedVars(x, w = rep(1, times = ncol(x)), na.rm = TRUE, useNames = TRUE)
866s > x_est2 <- colWeightedVars(t(x), w = rep(1, times = ncol(x)), na.rm = TRUE, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > 
866s > # Weighted row variances with missing values
866s > # Test with and without dimnames on x
866s > for (setDimnames in c(TRUE, FALSE)) {
866s +   if (setDimnames) dimnames(x) <- dimnames
866s +   else dimnames(x) <- NULL    
866s +   # Check names attribute
866s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
866s +     x_est1 <- rowWeightedVars(x, w = w, na.rm = TRUE, useNames = useNames)
866s +     print(x_est1)
866s +     x_est2 <- colWeightedVars(t(x), w = w, na.rm = TRUE, useNames = useNames)
866s +     stopifnot(all.equal(x_est2, x_est1))
866s +   }
866s + }
866s           a           b           c           d           e 
866s 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790 
866s [1] 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790
866s [1] 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790
866s [1] 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790
866s > 
866s > 
866s > # Weighted variances by rows and columns
866s > w <- 1:4
866s > # Test with and without dimnames on x
866s > for (setDimnames in c(TRUE, FALSE)) {
866s +   if (setDimnames) dimnames(x) <- dimnames
866s +   else dimnames(x) <- NULL    
866s +   # Check names attribute
866s +   for (useNames in c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)) {
866s +     x_est1 <- rowWeightedVars(x, w = w, na.rm = TRUE, useNames = useNames)
866s +     print(x_est1)
866s +     x_est2 <- colWeightedVars(t(x), w = w, na.rm = TRUE, useNames = useNames)
866s +     stopifnot(all.equal(x_est2, x_est1))
866s +   }
866s + }
866s           a           b           c           d           e 
866s 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790 
866s [1] 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790
866s [1] 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790
866s [1] 0.788377504 0.007986693 0.650894398 2.795470241 0.013980790
866s > 
866s > 
866s > # Weighted row standard deviation (excluding some columns)
866s > w <- c(1, 1, 0, 1)
866s > ## FIXME: rowVars()/rowSds() needs na.rm = FALSE (wrong default)
866s > x_est0 <- rowSds(x[, (w == 1), drop = FALSE], na.rm = FALSE)
866s > x_est1 <- rowWeightedSds(x, w = w)
866s > print(x_est1)
866s [1]        NA        NA 0.9734868        NA        NA
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedSds(t(x), w = w, na.rm = FALSE)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedSds(x, w = w, na.rm = FALSE, useNames = FALSE)
866s > x_est2 <- colWeightedSds(t(x), w = w, na.rm = FALSE, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowSds(x[, (w == 1), drop = FALSE], na.rm = FALSE, useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedSds(x, w = w, na.rm = FALSE, useNames = NA)
866s +   x_est2 <- colWeightedSds(t(x), w = w, na.rm = FALSE, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }  
866s > x_est1 <- rowWeightedSds(x, w = w, na.rm = FALSE, useNames = TRUE)
866s > x_est2 <- colWeightedSds(t(x), w = w, na.rm = FALSE, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s > 
866s > # Weighted row MADs (excluding some columns)
866s > w <- c(1, 1, 0, 1)
866s > x_est0 <- rowMads(x[, (w == 1), drop = FALSE])
866s > x_est1 <- rowWeightedMads(x, w = w)
866s > print(x_est1)
866s [1]        NA        NA 0.3046914        NA        NA
866s > stopifnot(all.equal(x_est1, x_est0))
866s > x_est2 <- colWeightedMads(t(x), w = w)
866s > stopifnot(all.equal(x_est2, x_est0))
866s > # Check names attribute
866s > dimnames(x) <- dimnames
866s > x_est1 <- rowWeightedMads(x, w = w, useNames = FALSE)
866s > x_est2 <- colWeightedMads(t(x), w = w, useNames = FALSE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > x_est0 <- rowMads(x[, (w == 1), drop = FALSE], useNames = TRUE)
866s > if (!matrixStats:::isUseNamesNADefunct()) {
866s +   x_est1 <- rowWeightedMads(x, w = w, useNames = NA)
866s +   x_est2 <- colWeightedMads(t(x), w = w, useNames = NA)
866s +   stopifnot(all.equal(x_est1, x_est0))
866s +   stopifnot(all.equal(x_est2, x_est0))
866s + }
866s > x_est1 <- rowWeightedMads(x, w = w, useNames = TRUE)
866s > x_est2 <- colWeightedMads(t(x), w = w, useNames = TRUE)
866s > stopifnot(all.equal(x_est1, x_est0))
866s > stopifnot(all.equal(x_est2, x_est0))
866s > dimnames(x) <- NULL
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > 
866s > fcns <- list(
866s +   weightedVar = c(rowWeightedVars, colWeightedVars),
866s +   weightedSd = c(rowWeightedSds, colWeightedSds),
866s +   weightedMad = c(rowWeightedMads, colWeightedMads)
866s + )
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Subsetted tests
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > source("utils/validateIndicesFramework.R")
866s > # To check names attribute
866s > dimnames <- list(letters[1:6], LETTERS[1:6])
866s > for (fcn in names(fcns)) {
866s +   cat(sprintf("subsetted tests on matrix %s()...\n", fcn))
866s +   row_fcn <- fcns[[fcn]][[1]]
866s +   col_fcn <- fcns[[fcn]][[2]]
866s + 
866s +   for (mode in c("numeric", "integer")) {
866s +     x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
866s +     w <- runif(6, min = 0, max = 6)
866s +     storage.mode(x) <- mode
866s +     storage.mode(w) <- mode
866s +     if (mode == "numeric") w[1] <- Inf
866s + 
866s +     # Test with and without dimnames on x
866s +     for (setDimnames in c(TRUE, FALSE)) {
866s +       if (setDimnames) dimnames(x) <- dimnames
866s +       else dimnames(x) <- NULL
866s + 
866s +       count <- 0L
866s +       for (rows in index_cases) {
866s +         for (cols in index_cases) {
866s +           count <- count + 1L
866s +           na.rm <- c(TRUE, FALSE)[count %% 2 + 1]
866s +           useNames <- c(if (!matrixStats:::isUseNamesNADefunct()) NA, TRUE, FALSE)
866s +           useNames <- useNames[count %% length(useNames) + 1]
866s + 
866s +           validateIndicesTestMatrix_w(x, w, rows, cols,
866s +                                       ftest = row_fcn, fsure = row_fcn,
866s +                                       na.rm = na.rm, useNames = useNames)
866s +           validateIndicesTestMatrix_w(x, w, rows, cols,
866s +                                       fcoltest = col_fcn, fsure = row_fcn,
866s +                                       na.rm = na.rm, useNames = useNames)
866s +         }
866s +       }
866s +     }
866s +   }
866s +   cat(sprintf("%s()...DONE\n", fcn))
866s + }
866s subsetted tests on matrix weightedVar()...
866s weightedVar()...DONE
866s subsetted tests on matrix weightedSd()...
866s weightedSd()...DONE
866s subsetted tests on matrix weightedMad()...
866s weightedMad()...DONE
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > 
866s > signTabulate0 <- function(x, ...) {
866s +   nneg <- sum(x < 0, na.rm = TRUE)
866s +   nzero <- sum(x == 0, na.rm = TRUE)
866s +   npos <- sum(x > 0, na.rm = TRUE)
866s +   nna <- sum(is.na(x))
866s +   nneginf <- sum(is.infinite(x) & x < 0, na.rm = TRUE)
866s +   nposinf <- sum(is.infinite(x) & x > 0, na.rm = TRUE)
866s +   res <- c(nneg, nzero, npos, nna, nneginf, nposinf)
866s +   res <- as.double(res)
866s +   names(res) <- c("-1", "0", "+1", "NA", "-Inf", "+Inf")
866s +   if (is.integer(x)) res <- res[1:4]
866s +   res
866s + } # signTabulate0()
866s > 
866s > 
866s > # Simulate data
866s > set.seed(0xBEEF)
866s > n <- 100L
866s > x <- runif(n)
866s > x[sample(n, size = 0.1 * n)] <- 0
866s > x[sample(n, size = 0.1 * n)] <- NA_real_
866s > x[sample(n, size = 0.1 * n)] <- -Inf
866s > x[sample(n, size = 0.1 * n)] <- +Inf
866s > 
866s > # Doubles
866s > message("Doubles:")
866s > counts0 <- signTabulate0(x)
866s > print(counts0)
866s   -1    0   +1   NA -Inf +Inf 
866s    9    7   77    7    9   10 
866s > counts1 <- signTabulate(x)
866s > print(counts1)
866s   -1    0   +1   NA -Inf +Inf 
866s    9    7   77    7    9   10 
866s > stopifnot(identical(counts1, counts0))
866s > 
866s > # Integers
866s > message("Integers:")
866s > x <- suppressWarnings(as.integer(x))
866s > counts0 <- signTabulate0(x)
866s > print(counts0)
866s -1  0 +1 NA 
866s  0 74  0 26 
866s > counts1 <- signTabulate(x)
866s > print(counts1)
866s -1  0 +1 NA 
866s  0 74  0 26 
866s > stopifnot(identical(counts1, counts0))
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > 
866s > signTabulate0 <- function(x, ...) {
866s +   nneg <- sum(x < 0, na.rm = TRUE)
866s +   nzero <- sum(x == 0, na.rm = TRUE)
866s +   npos <- sum(x > 0, na.rm = TRUE)
866s +   nna <- sum(is.na(x))
866s +   nneginf <- sum(is.infinite(x) & x < 0, na.rm = TRUE)
866s +   nposinf <- sum(is.infinite(x) & x > 0, na.rm = TRUE)
866s +   res <- c(nneg, nzero, npos, nna, nneginf, nposinf)
866s +   res <- as.double(res)
866s +   names(res) <- c("-1", "0", "+1", "NA", "-Inf", "+Inf")
866s +   if (is.integer(x)) res <- res[1:4]
866s +   res
866s + } # signTabulate0()
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Subsetted tests
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > source("utils/validateIndicesFramework.R")
866s > x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6, ncol = 6)
866s > x[2:3, 4:5] <- +Inf
866s > x[4:5, 1:2] <- -Inf
866s > for (idxs in index_cases) {
866s +   validateIndicesTestVector(x, idxs,
866s +                             ftest = signTabulate, fsure = signTabulate0)
866s + }
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > options(warn = 1)
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Consistency checks
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > set.seed(1)
866s > 
866s > sum2_R <- function(x, na.rm = FALSE, idxs = NULL) {
866s +   if (is.null(idxs)) {
866s +     sum(x, na.rm = na.rm)
866s +   } else {
866s +     sum(x[idxs], na.rm = na.rm)
866s +   }
866s + } # sum2_R()
866s > 
866s > 
866s > cat("Consistency checks:\n")
866s Consistency checks:
866s > for (kk in 1:20) {
866s +   cat("Random test #", kk, "\n", sep = "")
866s + 
866s +   # Simulate data in a matrix of any shape
866s +   n <- sample(1e3, size = 1L)
866s +   x <- rnorm(n, sd = 100)
866s + 
866s +   # Add NAs?
866s +   if ((kk %% 4) %in% c(3, 0)) {
866s +     cat("Adding NAs\n")
866s +     nna <- sample(n, size = 1L)
866s +     na_values <- c(NA_real_, NaN)
866s +     t <- sample(na_values, size = nna, replace = TRUE)
866s +     x[sample(length(x), size = nna)] <- t
866s +   }
866s + 
866s +   # Integer or double?
866s +   if ((kk %% 4) %in% c(2, 0)) {
866s +     cat("Coercing to integers\n")
866s +     storage.mode(x) <- "integer"
866s +   }
866s + 
866s +   na.rm <- sample(c(TRUE, FALSE), size = 1L)
866s + 
866s +   # Sum over all
866s +   y0 <- sum2_R(x, na.rm = na.rm)
866s +   y1 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(all.equal(y1, y0))
866s + 
866s +   # Sum over subset
866s +   nidxs <- sample(n, size = 1L)
866s +   idxs <- sample(n, size = nidxs)
866s +   y0 <- sum2_R(x, na.rm = na.rm, idxs = idxs)
866s +   y1 <- sum2(x, na.rm = na.rm, idxs = idxs)
866s +   stopifnot(all.equal(y1, y0))
866s + 
866s +   if (storage.mode(x) == "integer") {
866s +     storage.mode(x) <- "logical"
866s +     
866s +     y0 <- sum2_R(x, na.rm = na.rm)
866s +     y1 <- sum2(x, na.rm = na.rm)
866s +     stopifnot(all.equal(y1, y0))
866s +     
866s +     y0 <- sum2_R(x, na.rm = na.rm, idxs = idxs)
866s +     y1 <- sum2(x, na.rm = na.rm, idxs = idxs)
866s +     stopifnot(all.equal(y1, y0))
866s +   }
866s + } # for (kk ...)
866s Random test #1
866s Random test #2
866s Coercing to integers
866s Random test #3
866s Adding NAs
866s Random test #4
866s Adding NAs
866s Coercing to integers
866s Random test #5
866s Random test #6
866s Coercing to integers
866s Random test #7
866s Adding NAs
866s Random test #8
866s Adding NAs
866s Coercing to integers
866s Random test #9
866s Random test #10
866s Coercing to integers
866s Random test #11
866s Adding NAs
866s Random test #12
866s Adding NAs
866s Coercing to integers
866s Random test #13
866s Random test #14
866s Coercing to integers
866s Random test #15
866s Adding NAs
866s Random test #16
866s Adding NAs
866s Coercing to integers
866s Random test #17
866s Random test #18
866s Coercing to integers
866s Random test #19
866s Adding NAs
866s Random test #20
866s Adding NAs
866s Coercing to integers
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # All missing values
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > for (n in 0:2) {
866s +   for (na.rm in c(FALSE, TRUE)) {
866s +     x <- rep(NA_real_, times = n)
866s +     y0 <- sum(x, na.rm = na.rm)
866s +     y <- sum2(x, na.rm = na.rm)
866s +     stopifnot(all.equal(y, y0))
866s + 
866s +     x <- rep(NA_integer_, times = n)
866s +     y0 <- sum(x, na.rm = na.rm)
866s +     y <- sum2(x, na.rm = na.rm)
866s +     stopifnot(all.equal(y, y0))
866s +     
866s +     x <- rep(NA, times = n)
866s +     y0 <- sum(x, na.rm = na.rm)
866s +     y <- sum2(x, na.rm = na.rm)
866s +     stopifnot(all.equal(y, y0))
866s +   }
866s + }
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Special cases
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > for (na.rm in c(FALSE, TRUE)) {
866s +   # Summing over zero elements (integers)
866s +   x <- integer(0)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(identical(s1, s2))
866s + 
866s +   x <- 1:10
866s +   idxs <- integer(0)
866s +   s1 <- sum(x[idxs], na.rm = na.rm)
866s +   s2 <- sum2(x, idxs = idxs, na.rm = na.rm)
866s +   stopifnot(identical(s1, s2))
866s + 
866s +   # Summing over NA_integer_:s
866s +   x <- rep(NA_integer_, times = 10L)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(identical(s1, s2))
866s + 
866s +   x <- rep(NA_integer_, times = 10L)
866s +   idxs <- 1:5
866s +   s1 <- sum(x[idxs], na.rm = na.rm)
866s +   s2 <- sum2(x, idxs = idxs, na.rm = na.rm)
866s +   stopifnot(identical(s1, s2))
866s + 
866s + 
866s +   # Summing over zero elements (doubles)
866s +   x <- double(0)
866s +   s1 <- sum(x)
866s +   s2 <- sum2(x)
866s +   stopifnot(
866s +     identical(s1, 0),
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   x <- as.double(1:10)
866s +   idxs <- integer(0)
866s +   s1 <- sum(x[idxs])
866s +   s2 <- sum2(x, idxs = idxs)
866s +   stopifnot(
866s +     identical(s1, 0),
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   # Summing over NA_real_:s
866s +   x <- rep(NA_real_, times = 10L)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(
866s +     !na.rm || s1 == 0,
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   x <- rep(NA_real_, times = 10L)
866s +   idxs <- 1:5
866s +   s1 <- sum(x[idxs], na.rm = na.rm)
866s +   s2 <- sum2(x, idxs = idxs, na.rm = na.rm)
866s +   stopifnot(
866s +     !na.rm || s1 == 0,
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   # Summing over -Inf:s
866s +   x <- rep(-Inf, times = 3L)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(
866s +     is.infinite(s1) && s1 < 0,
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   # Summing over +Inf:s
866s +   x <- rep(+Inf, times = 3L)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(identical(s1, s2))
866s +   stopifnot(
866s +     is.infinite(s1) && s1 > 0,
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   # Summing over mix of -Inf:s and +Inf:s
866s +   x <- rep(c(-Inf, +Inf), times = 3L)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(
866s +     is.nan(s1),
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   # Summing over mix of -Inf:s and +Inf:s and numerics
866s +   x <- rep(c(-Inf, +Inf, 3.14), times = 2L)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   stopifnot(
866s +     is.nan(s1),
866s +     identical(s1, s2)
866s +   )
866s + 
866s +   # Summing over mix of NaN, NA, +Inf, and numerics
866s +   x <- c(NaN, NA, +Inf, 3.14)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   if (na.rm) {
866s +     stopifnot(
866s +       is.infinite(s1) && s1 > 0,
866s +       identical(s2, s1)
866s +     )
866s +   } else {
866s +     stopifnot(is.na(s1), is.na(s2))
866s +     ## NOTE, due to compiler optimization, it is not guaranteed that NA is
866s +     ## returned here (as one would expect). NaN might very well be returned,
866s +     ## when both NA and NaN are involved.  This is an accepted feature in R,
866s +     ## which is documented in help("is.nan").  See also
866s +     ## https://stat.ethz.ch/pipermail/r-devel/2017-April/074009.html.
866s +     ## Thus, we cannot guarantee that s1 is identical to s0.
866s +   }
866s + 
866s +   # Summing over mix of NaN, NA, +Inf, and numerics
866s +   x <- c(NA, NaN, +Inf, 3.14)
866s +   s1 <- sum(x, na.rm = na.rm)
866s +   s2 <- sum2(x, na.rm = na.rm)
866s +   if (na.rm) {
866s +     stopifnot(
866s +       is.infinite(s1) && s1 > 0,
866s +       identical(s2, s1)
866s +     )
866s +   } else {
866s +     stopifnot(is.na(s1), is.na(s2))
866s +     ## NOTE, due to compiler optimization, it is not guaranteed that NA is
866s +     ## returned here (as one would expect). NaN might very well be returned,
866s +     ## when both NA and NaN are involved.  This is an accepted feature in R,
866s +     ## which is documented in help("is.nan").  See also
866s +     ## https://stat.ethz.ch/pipermail/r-devel/2017-April/074009.html.
866s +     ## Thus, we cannot guarantee that s1 is identical to s0.
866s +   }
866s + }
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Summing of large integers
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > x <- c(.Machine$integer.max, 1L, -.Machine$integer.max)
866s > 
866s > # Total gives integer overflow
866s > s1 <- sum(x[1:2])                        # NA_integer_ w/ warning
866s > s2 <- sum2(x[1:2])                       # NA_integer_ w/ warning
866s > stopifnot(
866s +   getRversion() >= "3.5.0" || identical(s1, NA_integer_),
866s +   identical(s2, NA_integer_)
866s + )
866s > 
866s > ## Assert above warning
866s > res <- tryCatch({
866s +   s2 <- sum2(x[1:2])
866s + }, warning = identity)
866s > stopifnot(inherits(res, "warning"))
866s > 
866s > 
866s > # Total gives integer overflow (coerce to numeric)
866s > s1 <- sum(as.numeric(x[1:2]))            # 2147483648
866s > s2 <- sum2(as.numeric(x[1:2]))           # 2147483648
866s > s3 <- sum2(x[1:2], mode = "double")      # 2147483648
866s > stopifnot(
866s +   identical(s1, 2147483648),
866s +   identical(s1, s2),
866s +   identical(s1, s3)
866s + )
866s > 
866s > # Cumulative sum would give integer overflow but not the total
866s > s1 <- sum(x)                              # 1L
866s > s2 <- sum2(x)                             # 1L
866s > stopifnot(
866s +   identical(s1, 1L),
866s +   identical(s1, s2)
866s + )
866s > 
866s > # Input is double but coersing result to integer
866s > x <- c(1, 2, 3.1)
866s > s1 <- sum2(x)
866s > s2 <- sum2(x, mode = "integer")
866s > stopifnot(
866s +   identical(as.integer(s1), s2)
866s + )
866s > 
866s > ## Assert above warning
866s > res <- tryCatch({
866s +   s2 <- sum2(x, mode = "integer")
866s + }, warning = identity)
866s > stopifnot(inherits(res, "warning"))
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Summing of large doubles
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > ## Double overflow
866s > x <- rep(.Machine$double.xmax, times = 2L)
866s > y0 <- sum(x)
866s > print(y0)
866s [1] Inf
866s > y <- sum2(x)
866s > print(y)
866s [1] Inf
866s > stopifnot(
866s +   is.infinite(y) && y > 0,
866s +   identical(y, y0)
866s + )
866s > 
866s > x <- rep(-.Machine$double.xmax, times = 2L)
866s > y0 <- sum(x)
866s > print(y0)
866s [1] -Inf
866s > y <- sum2(x)
866s > print(y)
866s [1] -Inf
866s > stopifnot(
866s +   is.infinite(y) && y < 0,
866s +   identical(y, y0)
866s + )
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Argument 'idxs'
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > x <- 1:10
866s > idxs_list <- list(
866s +   integer = 1:5,
866s +   double = as.double(1:5),
866s +   logical = (x <= 5)
866s + )
866s > 
866s > for (idxs in idxs_list) {
866s +   cat("idxs:\n")
866s +   str(idxs)
866s +   s1 <- sum(x[idxs], na.rm = TRUE)
866s +   s2 <- sum2(x, idxs = idxs, na.rm = TRUE)
866s +   stopifnot(identical(s1, s2))
866s + }
866s idxs:
866s  int [1:5] 1 2 3 4 5
866s idxs:
866s  num [1:5] 1 2 3 4 5
866s idxs:
866s  logi [1:10] TRUE TRUE TRUE TRUE TRUE FALSE ...
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Subsetted tests
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > source("utils/validateIndicesFramework.R")
866s > x <- runif(6, min = -6, max = 6)
866s > storage.mode(x) <- "integer"
866s > for (idxs in index_cases) {
866s +   validateIndicesTestVector(x, idxs,
866s +                             ftest = sum2, fsure = sum,
866s +                             na.rm = FALSE)
866s +   validateIndicesTestVector(x, idxs,
866s +                             ftest = sum2, fsure = sum,
866s +                             na.rm = TRUE)
866s + }
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library(matrixStats)
866s > source("utils/validateIndicesFramework.R")
866s > 
866s > oopts <- options(matrixStats.validateIndices = "ignore")
866s > 
866s > ftest <- function(x, idxs) validateIndices(idxs, length(x))
866s > 
866s > x <- 1:6
866s > for (idxs in index_cases) {
866s +   for (mode in c("integer", "numeric", "logical")) {
866s +     if (!is.null(idxs)) {
866s +       suppressWarnings({storage.mode(idxs) <- mode})
866s +     }
866s +     validateIndicesTestVector(x, idxs, ftest = ftest, fsure = identity)
866s +   }
866s + }
866s > 
866s > ftest <- function(x, idxs) validateIndices(idxs, length(x))
866s > 
866s > for (idxs in index_error_cases) {
866s +   validateIndicesTestVector(x, idxs, ftest = ftest, fsure = identity)
866s + }
866s > 
866s > 
866s > ftest <- function(x, rows, cols) {
866s +   vr <- validateIndices(rows, dim(x)[1], FALSE)
866s +   vc <- validateIndices(cols, dim(x)[2], FALSE)
866s + 
866s +   stopifnot(all((vr > 0 & vr <= dim(x)[1]) | is.na(vr)))
866s +   stopifnot(all((vc > 0 & vc <= dim(x)[2]) | is.na(vc)))
866s +   suppressWarnings(x <- x[vr, vc, drop = FALSE])
866s +   x
866s + }
866s > 
866s > x <- matrix(1:36, nrow = 6, ncol = 6)
866s > for (rows in index_cases) {
866s +   for (cols in index_cases) {
866s +     validateIndicesTestMatrix(x, rows, cols, ftest = ftest, fsure = identity)
866s +   }
866s + }
866s > 
866s > # Testing for 64-bit builds (64 bits = 8 bytes)
866s > if (.Machine$sizeof.pointer == 8L) {
866s +   validateIndices(c(1.25*2^40, 3, 1*2^38, 1, 1.4*2^39), maxIdx = 1*2^41)
866s + }
866s > 
866s > options(oopts)
866s > 
866s 
866s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: arm-unknown-linux-gnueabihf (32-bit)
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library("matrixStats")
866s > 
866s > set.seed(1)
866s > x <- rnorm(1e4)
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Variance estimators
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > sigma2_a <- var(x)
866s > cat(sprintf("var(x) = %g\n", sigma2_a))
866s var(x) = 1.02487
866s > 
866s > sigma2_b <- varDiff(x)
866s > cat(sprintf("varDiff(x) = %g\n", sigma2_b))
866s varDiff(x) = 1.01224
866s > 
866s > d <- abs(sigma2_b - sigma2_a)
866s > cat(sprintf("Absolute difference = %g\n", d))
866s Absolute difference = 0.0126268
866s > stopifnot(d < 0.02)
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Standard deviation estimators
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > sigma_a <- sd(x)
866s > cat(sprintf("sd(x) = %g\n", sigma_a))
866s sd(x) = 1.01236
866s > 
866s > sigma_b <- sdDiff(x)
866s > cat(sprintf("sdDiff(x) = %g\n", sigma_b))
866s sdDiff(x) = 1.0061
866s > 
866s > d <- abs(sigma_b - sigma_a)
866s > cat(sprintf("Absolute difference = %g\n", d))
866s Absolute difference = 0.00625567
866s > stopifnot(d < 0.01)
866s > 
866s > # Sanity checks
866s > stopifnot(abs(sigma2_a - sigma_a ^ 2) < 1e-9)
866s > stopifnot(abs(sigma2_b - sigma_b ^ 2) < 1e-9)
866s > 
866s > 
866s > sigma_a2 <- mad(x)
866s > cat(sprintf("mad(x) = %g\n", sigma_a2))
866s mad(x) = 0.998376
866s > 
866s > sigma_b2 <- madDiff(x)
866s > cat(sprintf("madDiff(x) = %g\n", sigma_b2))
866s madDiff(x) = 1.02513
866s > 
866s > d <- abs(sigma_b2 - sigma_a2)
866s > cat(sprintf("Absolute difference = %g\n", d))
866s Absolute difference = 0.0267497
866s > stopifnot(d < 0.05)
866s > 
866s > 
866s > sigma_a3 <- IQR(x)
866s > cat(sprintf("IQR(x) = %g\n", sigma_a3))
866s IQR(x) = 1.35105
866s > 
866s > sigma_b3 <- iqrDiff(x)
866s > cat(sprintf("iqrDiff(x) = %g\n", sigma_b3))
866s iqrDiff(x) = 1.37797
866s > 
866s > d <- abs(sigma_b3 - sigma_a3)
866s > cat(sprintf("Absolute difference = %g\n", d))
866s Absolute difference = 0.0269152
866s > stopifnot(d < 0.05)
866s > 
866s > 
866s > 
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > # Trimmed estimators
866s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
866s > y <- x
866s > outliers <- sample(length(x), size = 0.1 * length(x))
866s > y[outliers] <- 100 * y[outliers]
866s > 
866s > sigma_ao <- sd(y[-outliers])
866s > cat(sprintf("sd(y) = %g\n", sigma_ao))
866s sd(y) = 1.01166
866s > 
866s > sigma_bo <- sdDiff(y[-outliers])
866s > cat(sprintf("sdDiff(y) = %g\n", sigma_bo))
866s sdDiff(y) = 1.00743
866s > 
866s > d <- abs(sigma_b - sigma_a)
866s > cat(sprintf("Absolute difference = %g\n", d))
866s Absolute difference = 0.00625567
866s > stopifnot(d < 0.01)
866s > 
866s > sigma_bot <- sdDiff(y, trim = 0.05)
866s > cat(sprintf("sdDiff(y, trim = 0.05) = %g\n", sigma_bot))
866s sdDiff(y, trim = 0.05) = 7.74327
866s > 
866s > d <- abs(sigma_bot - sigma_a)
866s > cat(sprintf("Absolute difference = %g\n", d))
866s Absolute difference = 6.73091
866s > #stopifnot(d < 1e-3)
866s > 
866s > sigma_cot <- madDiff(y, trim = 0.05)
866s > cat(sprintf("madDiff(y, trim = 0.05) = %g\n", sigma_cot))
866s madDiff(y, trim = 0.05) = 1.15278
866s > 
866s > sigma_dot <- iqrDiff(y, trim = 0.05)
866s > cat(sprintf("iqrDiff(y, trim = 0.05) = %g\n", sigma_dot))
866s iqrDiff(y, trim = 0.05) = 1.55762
866s > 
866s > 
866s > fcns <- list(
866s +   varDiff = varDiff,
866s +   sdDiff  = sdDiff,
866s +   madDiff = madDiff,
866s +   iqrDiff = iqrDiff
866s + )
866s > 
866s > for (name in names(fcns)) {
866s +   cat(sprintf("%s()...\n", name))
866s +   fcn <- fcns[[name]]
866s + 
866s +   for (mode in c("integer", "double")) {
866s +     cat("mode: ", mode, "", sep = "")
866s +     for (n in 0:3) {
866s +       x <- runif(n, min = -5, max = 5)
866s +       storage.mode(x) <- mode
866s +       str(x)
866s + 
866s +       y <- fcn(x)
866s +       yt <- fcn(x, trim = 0.1)
866s +       str(list("non-trimmed" = y, trimmed = yt))
866s +     } # for (mode ...)
866s +   }
866s + 
866s +   cat(sprintf("%s()...DONE\n", name))
866s + } # for (name ...)
866s varDiff()...
866s mode: integer int(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int -4
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int [1:2] 3 2
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int [1:3] 1 4 -1
866s List of 2
866s  $ non-trimmed: num 16
866s  $ trimmed    : num 16
866s mode: double num(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num -0.794
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num [1:2] 0.897 -3.728
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num [1:3] 2.07 -1.13 1.94
866s List of 2
866s  $ non-trimmed: num 9.83
866s  $ trimmed    : num 9.83
866s varDiff()...DONE
866s sdDiff()...
866s mode: integer int(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int 2
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int [1:2] -4 1
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int [1:3] -2 1 -1
866s List of 2
866s  $ non-trimmed: num 2.5
866s  $ trimmed    : num 2.5
866s mode: double num(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num -3.78
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num [1:2] -2.04 2.38
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num [1:3] 1.42 -2.14 1.14
866s List of 2
866s  $ non-trimmed: num 3.42
866s  $ trimmed    : num 3.42
866s sdDiff()...DONE
866s madDiff()...
866s mode: integer int(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int -1
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int [1:2] -1 4
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int [1:3] -1 0 -3
866s List of 2
866s  $ non-trimmed: num 2.1
866s  $ trimmed    : num 2.1
866s mode: double num(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num -1.13
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num [1:2] -1.7 -1.21
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  num [1:3] -2.39 -0.464 3.086
866s List of 2
866s  $ non-trimmed: num 0.851
866s  $ trimmed    : num 0.851
866s madDiff()...DONE
866s iqrDiff()...
866s mode: integer int(0) 
866s List of 2
866s  $ non-trimmed: num NA
866s  $ trimmed    : num NA
866s  int 3
866s List of 2
866s  $ non-trimmed: num 0
866s  $ trimmed    : num 0
866s  int [1:2] -3 4
866s List of 2
866s  $ non-trimmed: num 0
866s  $ trimmed    : num 0
866s  int [1:3] 0 -2 -2
866s List of 2
866s  $ non-trimmed: num 0.707
866s  $ trimmed    : num 0.707
867s mode: double num(0) 
867s List of 2
867s  $ non-trimmed: num NA
867s  $ trimmed    : num NA
867s  num -4.46
867s List of 2
867s  $ non-trimmed: num 0
867s  $ trimmed    : num 0
867s  num [1:2] 3.67 1.02
867s List of 2
867s  $ non-trimmed: num 0
867s  $ trimmed    : num 0
867s  num [1:3] -0.537 -2.733 2.857
867s List of 2
867s  $ non-trimmed: num 2.75
867s  $ trimmed    : num 2.75
867s iqrDiff()...DONE
867s > 
867s 
867s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
867s Copyright (C) 2024 The R Foundation for Statistical Computing
867s Platform: arm-unknown-linux-gnueabihf (32-bit)
867s 
867s R is free software and comes with ABSOLUTELY NO WARRANTY.
867s You are welcome to redistribute it under certain conditions.
867s Type 'license()' or 'licence()' for distribution details.
867s 
867s R is a collaborative project with many contributors.
867s Type 'contributors()' for more information and
867s 'citation()' on how to cite R or R packages in publications.
867s 
867s Type 'demo()' for some demos, 'help()' for on-line help, or
867s 'help.start()' for an HTML browser interface to help.
867s Type 'q()' to quit R.
867s 
867s > library("matrixStats")
867s > 
867s > fcns <- list(
867s +   varDiff = varDiff,
867s +   sdDiff  = sdDiff,
867s +   madDiff = madDiff,
867s +   iqrDiff = iqrDiff
867s + )
867s > 
867s > 
867s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
867s > # Subsetted tests
867s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
867s > source("utils/validateIndicesFramework.R")
867s > for (name in names(fcns)) {
867s +   cat(sprintf("subsetted tests on %s()...\n", name))
867s +   fcn <- fcns[[name]]
867s + 
867s +   for (mode in c("numeric", "integer")) {
867s +     x <- runif(6, min = -6, max = 6)
867s +     storage.mode(x) <- mode
867s +     trim <- runif(1, min = 0, max = 0.5)
867s +     if (mode == "numeric") x[1] <- Inf
867s + 
867s +     for (diff in 1:2) {
867s +       for (idxs in index_cases) {
867s +         validateIndicesTestVector(x, idxs,
867s +                                   ftest = fcn, fsure = fcn,
867s +                                   na.rm = TRUE, diff = diff, trim = trim)
867s +         validateIndicesTestVector(x, idxs,
867s +                                   ftest = fcn, fsure = fcn,
867s +                                   na.rm = FALSE, diff = diff, trim = trim)
867s +       }
867s +     }
867s +   }
867s +   cat(sprintf("%s()...DONE\n", name))
867s + }
867s subsetted tests on varDiff()...
867s varDiff()...DONE
867s subsetted tests on sdDiff()...
867s sdDiff()...DONE
867s subsetted tests on madDiff()...
867s madDiff()...DONE
867s subsetted tests on iqrDiff()...
867s iqrDiff()...DONE
867s > 
867s 
867s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
867s Copyright (C) 2024 The R Foundation for Statistical Computing
867s Platform: arm-unknown-linux-gnueabihf (32-bit)
867s 
867s R is free software and comes with ABSOLUTELY NO WARRANTY.
867s You are welcome to redistribute it under certain conditions.
867s Type 'license()' or 'licence()' for distribution details.
867s 
867s R is a collaborative project with many contributors.
867s Type 'contributors()' for more information and
867s 'citation()' on how to cite R or R packages in publications.
867s 
867s Type 'demo()' for some demos, 'help()' for on-line help, or
867s 'help.start()' for an HTML browser interface to help.
867s Type 'q()' to quit R.
867s 
868s > library("matrixStats")
868s > 
868s > for (mode in c("logical", "integer", "double")) {
868s +   cat("mode: ", mode, "", sep = "")
868s +   n <- 2L
868s +   x <- runif(n, min = -5, max = 5)
868s +   if (mode == "logical") {
868s +     x <- x > 0
868s +   }
868s +   storage.mode(x) <- mode
868s +   str(x)
868s + 
868s +   cat("All weights are 1\n")
868s +   w <- rep(1, times = n)
868s +   m0 <- weighted.mean(x, w)
868s +   m1 <- weightedMean(x, w)
868s +   str(list(m0 = m0, m1 = m1))
868s +   stopifnot(identical(m1, m0))
868s + 
868s +   cat("First weight is 5\n")
868s +   # Pull the mean towards zero
868s +   w[1] <- 5
868s +   str(w)
868s +   m0 <- weighted.mean(x, w)
868s +   m1 <- weightedMean(x, w)
868s +   str(list(m0 = m0, m1 = m1))
868s +   stopifnot(identical(m1, m0))
868s + 
868s +   cat("All weights are 0\n")
868s +   # All weights set to zero
868s +   w <- rep(0, times = n)
868s +   m0 <- weighted.mean(x, w)
868s +   m1 <- weightedMean(x, w)
868s +   str(list(m0 = m0, m1 = m1))
868s +   stopifnot(identical(m1, m0))
868s + 
868s +   cat("First weight is 8.5\n")
868s +   # Put even more weight on the zero
868s +   w[1] <- 8.5
868s +   m0 <- weighted.mean(x, w)
868s +   m1 <- weightedMean(x, w)
868s +   str(list(m0 = m0, m1 = m1))
868s +   stopifnot(identical(m1, m0))
868s + 
868s +   cat("First weight is Inf\n")
868s +   # All weight on the first value
868s +   w[1] <- Inf
868s +   m0 <- weighted.mean(x, w)
868s +   m1 <- weightedMean(x, w)
868s +   str(list(m0 = m0, m1 = m1))
868s +   stopifnot(identical(m1, m0))
868s + 
868s +   cat("Last weight is Inf\n")
868s +   # All weight on the last value
868s +   w[1] <- 1
868s +   w[n] <- Inf
868s +   m0 <- weighted.mean(x, w)
868s +   m1 <- weightedMean(x, w)
868s +   str(list(m0 = m0, m1 = m1))
868s +   stopifnot(identical(m1, m0))
868s + } # for (mode ...)
868s mode: logical logi [1:2] FALSE TRUE
868s All weights are 1
868s List of 2
868s  $ m0: num 0.5
868s  $ m1: num 0.5
868s First weight is 5
868s  num [1:2] 5 1
868s List of 2
868s  $ m0: num 0.167
868s  $ m1: num 0.167
868s All weights are 0
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s First weight is 8.5
868s List of 2
868s  $ m0: num 0
868s  $ m1: num 0
868s First weight is Inf
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s Last weight is Inf
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s mode: integer int [1:2] 1 0
868s All weights are 1
868s List of 2
868s  $ m0: num 0.5
868s  $ m1: num 0.5
868s First weight is 5
868s  num [1:2] 5 1
868s List of 2
868s  $ m0: num 0.833
868s  $ m1: num 0.833
868s All weights are 0
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s First weight is 8.5
868s List of 2
868s  $ m0: num 1
868s  $ m1: num 1
868s First weight is Inf
868s List of 2
868s *** Testing for missing values
868s  $ m0: num NaN
868s  $ m1: num NaN
868s Last weight is Inf
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s mode: double num [1:2] -2.3027 -0.0166
868s All weights are 1
868s List of 2
868s  $ m0: num -1.16
868s  $ m1: num -1.16
868s First weight is 5
868s  num [1:2] 5 1
868s List of 2
868s  $ m0: num -1.92
868s  $ m1: num -1.92
868s All weights are 0
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s First weight is 8.5
868s List of 2
868s  $ m0: num -2.3
868s  $ m1: num -2.3
868s First weight is Inf
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s Last weight is Inf
868s List of 2
868s  $ m0: num NaN
868s  $ m1: num NaN
868s > 
868s > 
868s > message("*** Testing for missing values")
868s > # NA tests
868s > xs <- list(A = c(1, 2, 3), B = c(NA, 2, 3), C = c(NA, 2, 3))
868s > ws <- list(A = c(1, 1, 1), B = c(NA, 1, 1), C = c(1, NA, 1))
868s > ## NOTE: The (B, B) case with na.rm = TRUE is interesting because
868s > ## even if NAs in 'w' are not dropped by na.rm = TRUE, this one
868s > ## is because 'x' is dropped and therefore that first element
868s > ## is skipped in the computation.  It basically does
868s > ##   keep <- !is.na(x); x <- x[keep]; w <- w[keep]
868s > ## without looking at 'w'.
868s > for (x in xs) {
868s +   for (mode in c("logical", "integer", "double")) {
868s +     storage.mode(x) <- mode
868s +     for (w in ws) {
868s +       for (na.rm in c(FALSE, TRUE)) {
868s +         cat(sprintf("mode: %s, na.rm = %s\n", mode, na.rm))
868s +         str(list(x = x, w = w))
868s +         m0 <- weighted.mean(x, w, na.rm = na.rm)
868s +         m1 <- weightedMean(x, w, na.rm = na.rm)
868s +         str(list(m0 = m0, m1 = m1))
868s +         stopifnot(all.equal(m1, m0))
868s +       }
868s +     }
868s +   }
868s + }
868s mode: logical, na.rm = FALSE
868s List of 2
868s  $ x: logi [1:3] TRUE TRUE TRUE
868s  $ w: num [1:3] 1 1 1
868s List of 2
868s  $ m0: num 1
868s  $ m1: num 1
868s mode: logical, na.rm = TRUE
868s List of 2
868s  $ x: logi [1:3] TRUE TRUE TRUE
868s  $ w: num [1:3] 1 1 1
868s List of 2
868s  $ m0: num 1
868s  $ m1: num 1
868s mode: logical, na.rm = FALSE
868s List of 2
868s  $ x: logi [1:3] TRUE TRUE TRUE
868s  $ w: num [1:3] NA 1 1
868s List of 2
868s  $ m0: num NA
868s  $ m1: num NA
868s mode: logical, na.rm = TRUE
868s List of 2
868s  $ x: logi [1:3] TRUE TRUE TRUE
868s  $ w: num [1:3] NA 1 1
868s List of 2
868s  $ m0: num NA
868s  $ m1: num NA
868s mode: logical, na.rm = FALSE
868s List of 2
868s  $ x: logi [1:3] TRUE TRUE TRUE
868s  $ w: num [1:3] 1 NA 1
868s List of 2
868s  $ m0: num NA
868s  $ m1: num NA
868s mode: logical, na.rm = TRUE
868s List of 2
868s  $ x: logi [1:3] TRUE TRUE TRUE
868s  $ w: num [1:3] 1 NA 1
868s List of 2
868s  $ m0: num NA
868s  $ m1: num NA
868s mode: integer, na.rm = FALSE
868s List of 2
868s  $ x: int [1:3] 1 1 1
868s  $ w: num [1:3] 1 1 1
868s List of 2
868s  $ m0: num 1
869s  $ m1: num 1
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] 1 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] 1 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] 1 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] 1 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] 1 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] 1 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] 1 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] 1 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] 1 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] 1 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] 1 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = FALSE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = TRUE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: logical, na.rm = FALSE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = TRUE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: logical, na.rm = FALSE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = TRUE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = FALSE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = TRUE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: logical, na.rm = FALSE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = TRUE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: logical, na.rm = FALSE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: logical, na.rm = TRUE
869s List of 2
869s  $ x: logi [1:3] NA TRUE TRUE
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: integer, na.rm = FALSE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: integer, na.rm = TRUE
869s List of 2
869s  $ x: int [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] NA 1 1
869s List of 2
869s  $ m0: num 1
869s  $ m1: num 1
869s mode: double, na.rm = FALSE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s mode: double, na.rm = TRUE
869s List of 2
869s  $ x: num [1:3] NA 1 1
869s  $ w: num [1:3] 1 NA 1
869s List of 2
869s  $ m0: num NA
869s  $ m1: num NA
869s > 
869s 
869s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
869s Copyright (C) 2024 The R Foundation for Statistical Computing
869s Platform: arm-unknown-linux-gnueabihf (32-bit)
869s 
869s R is free software and comes with ABSOLUTELY NO WARRANTY.
869s You are welcome to redistribute it under certain conditions.
869s Type 'license()' or 'licence()' for distribution details.
869s 
869s R is a collaborative project with many contributors.
869s Type 'contributors()' for more information and
869s 'citation()' on how to cite R or R packages in publications.
869s 
869s Type 'demo()' for some demos, 'help()' for on-line help, or
869s 'help.start()' for an HTML browser interface to help.
869s Type 'q()' to quit R.
869s 
869s > library("matrixStats")
869s > 
869s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
869s > # Subsetted tests
869s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
869s > source("utils/validateIndicesFramework.R")
869s > for (mode in c("numeric", "integer")) {
869s +   x <- runif(6, min = -6, max = 6)
869s +   w <- runif(6, min = 0, max = 6)
869s +   storage.mode(x) <- mode
869s +   storage.mode(w) <- mode
869s +   if (mode == "numeric") w[1] <- Inf
869s + 
869s +   for (idxs in index_cases) {
869s +     validateIndicesTestVector_w(x, w, idxs,
869s +                                 ftest = weightedMean, fsure = weighted.mean,
869s +                                 na.rm = TRUE, refine = TRUE)
869s +     validateIndicesTestVector_w(x, w, idxs,
869s +                                 ftest = weightedMean, fsure = weighted.mean,
869s +                                 na.rm = FALSE, refine = TRUE)
869s +   }
869s + }
869s > 
870s 
870s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
870s Copyright (C) 2024 The R Foundation for Statistical Computing
870s Platform: arm-unknown-linux-gnueabihf (32-bit)
870s 
870s R is free software and comes with ABSOLUTELY NO WARRANTY.
870s You are welcome to redistribute it under certain conditions.
870s Type 'license()' or 'licence()' for distribution details.
870s 
870s R is a collaborative project with many contributors.
870s Type 'contributors()' for more information and
870s 'citation()' on how to cite R or R packages in publications.
870s 
870s Type 'demo()' for some demos, 'help()' for on-line help, or
870s 'help.start()' for an HTML browser interface to help.
870s Type 'q()' to quit R.
870s 
870s > library("matrixStats")
870s > 
870s > x <- 1:5
870s > y <- weightedMedian(x)
870s > y <- weightedMedian(x, w = c(NA, Inf, NA, Inf, NA), na.rm = TRUE)
870s > print(y)
870s [1] 3
870s > 
870s > y <- weightedMedian(x, w = c(NA, Inf, NA, Inf, NA), na.rm = FALSE)
870s > print(y)
870s [1] NA
870s > stopifnot(is.na(y))
870s > 
870s > x <- 1:10
870s > n <- length(x)
870s > 
870s > y1 <- median(x)                           # 5.5
870s > y2 <- weightedMedian(x)                   # 5.5
870s > stopifnot(all.equal(y1, y2))
870s > 
870s > 
870s > w <- rep(1, times = n)
870s > y1 <- weightedMedian(x, w)                 # 5.5 (default)
870s > y2a <- weightedMedian(x, ties = "weighted")  # 5.5 (default)
870s > y2b <- weightedMedian(x, ties = "min")       # 5
870s > y2c <- weightedMedian(x, ties = "max")       # 6
870s > stopifnot(all.equal(y2a, y1))
870s > 
870s > y3 <- weightedMedian(x, w)                # 5.5 (default)
870s > 
870s > 
870s > # Pull the median towards zero
870s > w[1] <- 5
870s > y1 <- weightedMedian(x, w)                # 3.5
870s > y <- c(rep(0, times = w[1]), x[-1])       # Only possible for integer weights
870s > y2 <- median(y)                           # 3.5
870s > stopifnot(all.equal(y1, y2))
870s > 
870s > # Put even more weight on the zero
870s > w[1] <- 8.5
870s > y <- weightedMedian(x, w)                # 2
870s > 
870s > # All weight on the first value
870s > w[1] <- Inf
870s > y <- weightedMedian(x, w)                # 1
870s > 
870s > # All weight on the last value
870s > w[1] <- 1
870s > w[n] <- Inf
870s > y <- weightedMedian(x, w)                # 10
870s > 
870s > # All weights set to zero
870s > w <- rep(0, times = n)
870s > y <- weightedMedian(x, w)                # NA
870s > 
870s > x <- 1:4
870s > w <- rep(1, times = 4)
870s > for (mode in c("integer", "double")) {
870s +   storage.mode(x) <- mode
870s +   for (ties in c("weighted", "mean", "min", "max")) {
870s +     cat(sprintf("ties = %s\n", ties))
870s +     y <- weightedMedian(x, w, ties = ties)
870s +   }
870s + }
870s ties = weighted
870s ties = mean
870s ties = min
870s ties = max
870s ties = weighted
870s ties = mean
870s ties = min
870s ties = max
870s > 
870s > set.seed(0x42)
870s > 
870s > y <- weightedMedian(x = double(0L))
870s > print(y)
870s [1] NA
870s > stopifnot(length(y) == 1L)
870s > stopifnot(is.na(y))
870s > 
870s > y <- weightedMedian(x = x[1])
870s > print(y)
870s [1] 1
870s > stopifnot(length(y) == 1L)
870s > stopifnot(all.equal(y, x[1]))
870s > 
870s > 
870s > n <- 1e3
870s > x <- runif(n)
870s > w <- runif(n, min = 0, max = 1)
870s > for (mode in c("integer", "double")) {
870s +   storage.mode(x) <- mode
870s +   for (ties in c("weighted", "mean", "min", "max")) {
870s +     y <- weightedMedian(x, w, ties = ties)
870s +     cat(sprintf("mode = %s, ties = %s, result = %g\n", mode, ties, y))
870s +   }
870s + }
870s mode = integer, ties = weighted, result = 0
870s mode = integer, ties = mean, result = 0
870s mode = integer, ties = min, result = 0
870s mode = integer, ties = max, result = 0
870s mode = double, ties = weighted, result = 0
870s mode = double, ties = mean, result = 0
870s mode = double, ties = min, result = 0
870s mode = double, ties = max, result = 0
870s > 
870s > 
870s > # A large vector
870s > n <- 1e5
870s > x <- runif(n)
870s > w <- runif(n, min = 0, max = 1)
870s > y <- weightedMedian(x, w)
870s > 
870s > y <- weightedMedian(x, w, ties = "min")
870s > 
870s > 
870s > # Single Number
870s > xs <- c(1, NA_integer_)
870s > ws <- c(1, NA_integer_)
870s > for (x in xs) {
870s +   for (w in ws) {
870s +     y <- weightedMedian(x = x, w = w)
870s +     if (is.na(w)) z <- NA_real_
870s +     else z <- x[1]
870s +     stopifnot(all.equal(y, z))
870s +   }
870s + }
870s > 
870s > ## Logical
870s > x1 <- c(TRUE, FALSE, TRUE)
870s > w0 <- c(0, 0, 0)
870s > stopifnot(!is.finite(weightedMedian(x1, w0)),
870s +           !is.infinite(weightedMedian(x1, w0)))
870s > 
870s > w1 <- c(1, 1, 1)
870s > stopifnot(weightedMedian(x1, w1) == 1)
870s > 
870s > w2 <- c(1, 2, 3)
870s > stopifnot(weightedMedian(x1, w2) == 1)
870s > 
870s > ### NA
870s > stopifnot(is.na(weightedMedian(c(TRUE, FALSE, NA),
870s +                                c(1, 2, 3))),
870s +           all.equal(weightedMedian(c(TRUE, FALSE, NA),
870s +                                    c(1, 2, 3),
870s +                                    na.rm = TRUE),
870s +                     weightedMedian(c(TRUE, FALSE),
870s +                                    c(1, 2))))
870s > ### Identical to as.integer()
870s > x <- rcauchy(100)
870s > w <- abs(rcauchy(100))
870s > stopifnot(all.equal(weightedMedian(x > 0, w),
870s +                     weightedMedian(as.integer(x > 0), w)))
870s > 
870s > 
870s > 
870s 
870s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
870s Copyright (C) 2024 The R Foundation for Statistical Computing
870s Platform: arm-unknown-linux-gnueabihf (32-bit)
870s 
870s R is free software and comes with ABSOLUTELY NO WARRANTY.
870s You are welcome to redistribute it under certain conditions.
870s Type 'license()' or 'licence()' for distribution details.
870s 
870s R is a collaborative project with many contributors.
870s Type 'contributors()' for more information and
870s 'citation()' on how to cite R or R packages in publications.
870s 
870s Type 'demo()' for some demos, 'help()' for on-line help, or
870s 'help.start()' for an HTML browser interface to help.
870s Type 'q()' to quit R.
870s 
870s > library("matrixStats")
870s > 
870s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
870s > # Subsetted tests
870s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
870s > source("utils/validateIndicesFramework.R")
870s > for (mode in c("numeric", "integer")) {
870s +   x <- runif(6, min = -6, max = 6)
870s +   w <- runif(6, min = 0, max = 6)
870s +   storage.mode(x) <- mode
870s +   storage.mode(w) <- mode
870s +   if (mode == "numeric") w[1] <- Inf
870s + 
870s +   for (idxs in index_cases) {
870s +     validateIndicesTestVector_w(x, w, idxs,
870s +                                 ftest = weightedMedian,
870s +                                 fsure = weightedMedian,
870s +                                 na.rm = TRUE)
870s +     validateIndicesTestVector_w(x, w, idxs,
870s +                                 ftest = weightedMedian,
870s +                                 fsure = weightedMedian,
870s +                                 na.rm = FALSE)
870s + 
870s +     for (ties in c("weighted", "mean", "min", "max")) {
870s +       validateIndicesTestVector_w(x, w, idxs,
870s +                                   ftest = weightedMedian,
870s +                                   fsure = weightedMedian,
870s +                                   na.rm = TRUE, ties = ties)
870s +       validateIndicesTestVector_w(x, w, idxs,
870s +                                   ftest = weightedMedian,
870s +                                   fsure = weightedMedian,
870s +                                   na.rm = FALSE, ties = ties)
870s +     }
870s +   }
870s + }
871s > 
871s 
871s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
871s Copyright (C) 2024 The R Foundation for Statistical Computing
871s Platform: arm-unknown-linux-gnueabihf (32-bit)
871s 
871s R is free software and comes with ABSOLUTELY NO WARRANTY.
871s You are welcome to redistribute it under certain conditions.
871s Type 'license()' or 'licence()' for distribution details.
871s 
871s R is a collaborative project with many contributors.
871s Type 'contributors()' for more information and
871s 'citation()' on how to cite R or R packages in publications.
871s 
871s Type 'demo()' for some demos, 'help()' for on-line help, or
871s 'help.start()' for an HTML browser interface to help.
871s Type 'q()' to quit R.
871s 
871s > library("matrixStats")
871s *** weightedVar() ...
871s > 
871s > weightedVar_R <- function(x, w) {
871s +   mu <- weighted.mean(x, w = w)
871s +   sum(w * (x - mu) ^ 2) / (sum(w) - 1)
871s + }
871s > 
871s > 
871s > n <- 10
871s > x <- as.double(1:n)
871s > 
871s > message("*** weightedVar() ...")
871s > 
871s > message("- Zero elements")
871s > m0 <- var(integer(0))
871s > m1 <- weightedVar(integer(0), w = integer(0))
871s - Zero elements
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0:- One elements
871s - Uniform weights (all w = 1)
871s  num NA
871s  $ m1: int NA
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > 
871s > message("- One elements")
871s > m0 <- var(1)
871s > m1 <- weightedVar(1)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num NA
871s  $ m1: num NA
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > 
871s > message("- Uniform weights (all w = 1)")
871s > m0 <- var(x)
871s > w <- rep(1, times = n)
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num 9.17
871s  $ m1: num 9.17
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > 
871s > message("- Uniform weights (all w = 3)")
871s > m0 <- var(rep(x, each = 3))
871s > w <- rep(3, times = n)
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num 8.53
871s  $ m1: num 8.53
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > 
871s > message("- Uniform weights on the first five elements")
871s - Uniform weights (all w = 3)
871s - Uniform weights on the first five elements
871s > idxs <- 1:5
871s > m0 <- var(x[1:5])
871s > w <- rep(0, times = n)
871s > w[idxs] <- 1
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num 2.5
871s  $ m1: num 2.5
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > 
871s > message("- Uniform weights on every second elements")
871s > idxs <- seq(from = 1, to = n, by = 2)
871s - Uniform weights on every second elements
871s > m0 <- var(x[idxs])
871s > w <- rep(0, times = n)
871s > w[idxs] <- 1
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num 10
871s  $ m1: num 10
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > 
871s > message("- All weights are zero")
871s > idxs <- integer(0L)
871s > m0 <- var(x[idxs])
871s > w <- rep(0, times = n)
871s > w[idxs] <- 1
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num NA
871s  $ m1:- All weights are zero
871s  num NA
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > message("- Infinite weight on first element")
871s > idxs <- 1L
871s > m0 <- var(x[idxs])
871s > w <- rep(0, times = n)
871s > w[idxs] <- Inf
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1))
871s - Infinite weight on first element
871s List of 2
871s  $ m0:- Missing-value weight on first element
871s  num NA
871s  $ m1: num NA
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > message("- Missing-value weight on first element")
871s > idxs <- 1L
871s > w <- rep(1, times = n)
871s > w[idxs] <- NA_real_
871s > m1 <- weightedVar(x, w = w)
871s > str(list(m1 = m1))
871s List of 1
871s  $ m1: num NA
871s > stopifnot(identical(m1, NA_real_))
871s > 
871s > 
871s > message("- Frequency weights")
871s > 
871s > ## From https://en.wikipedia.org/wiki/Weighted_arithmetic_mean
871s > y <-  c(2, 2, 4, 5, 5, 5)
871s > x <- unique(y)
871s > w <- table(y)
871s > stopifnot(names(w) == x)
871s > 
871s > m0 <- weightedVar(x, w = w)
871s > m1 <- var(y)
871s > stopifnot(all.equal(m1, m0))
871s > m2 <- weightedVar(x, w = w)
871s > str(list(m0 = m0, m1 = m1, m2 = m2))
871s List of 3
871s  $ m0: num 2.17
871s  $ m1: num 2.17
871s  $ m2: num 2.17
871s > stopifnot(all.equal(m2, m0))
871s > 
871s > ## From https://github.com/HenrikBengtsson/matrixStats/issues/72
871s > large <- c(21, 8, 26, 1, 15, 33, 12, 25, 0, 84)
871s > years <- c(41706, 9301, 33678, 3082, 27040, 44188, 10049, 30591, 2275, 109831)
871s > 
871s > m0 <- weightedVar(large, w = years)
871s > m1 <- weightedVar(large, w = years)
871s > str(list(m0 = m0, m1 = m1))
871s List of 2
871s  $ m0: num 899
871s  $ m1: num 899
871s > stopifnot(all.equal(m1, m0))
871s > 
871s > message("*** weightedVar() ... DONE")
871s > 
871s - Frequency weights
871s *** weightedVar() ... DONE
871s 
871s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
871s Copyright (C) 2024 The R Foundation for Statistical Computing
871s Platform: arm-unknown-linux-gnueabihf (32-bit)
871s 
871s R is free software and comes with ABSOLUTELY NO WARRANTY.
871s You are welcome to redistribute it under certain conditions.
871s Type 'license()' or 'licence()' for distribution details.
871s 
871s R is a collaborative project with many contributors.
871s Type 'contributors()' for more information and
871s 'citation()' on how to cite R or R packages in publications.
871s 
871s Type 'demo()' for some demos, 'help()' for on-line help, or
871s 'help.start()' for an HTML browser interface to help.
871s Type 'q()' to quit R.
871s 
872s > library("matrixStats")
872s > 
872s > fcns <- list(
872s +   weightedVar = weightedVar,
872s +   weightedSd  = weightedSd,
872s +   weightedMad = weightedMad
872s + )
872s > 
872s > for (name in names(fcns)) {
872s +   cat(sprintf("%s()...\n", name))
872s +   fcn <- fcns[[name]]
872s + 
872s +   for (mode in c("integer", "double")) {
872s +     cat("mode: ", mode, "\n", sep = "")
872s +     n <- 15L
872s +     x <- runif(n, min = -5, max = 5)
872s +     storage.mode(x) <- mode
872s +     str(x)
872s + 
872s +     for (add_na in c(FALSE, TRUE)) {
872s +       cat("add_na: ", add_na, "\n", sep = "")
872s +       if (add_na) {
872s +         x[c(5, 7)] <- NA
872s +       }
872s +       str(x)
872s + 
872s +       for (na.rm in c(FALSE, TRUE)) {
872s +         cat("na.rm: ", na.rm, "\n", sep = "")
872s + 
872s +         cat("Weights are not specified (all are 1)\n")
872s +         m1 <- fcn(x, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("All weights are 1\n")
872s +         w <- rep(1, times = n)
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("First weight is 5\n")
872s +         # Pull the mean towards zero
872s +         w[1] <- 5
872s +         str(w)
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("All weights are 0\n")
872s +         # All weights set to zero
872s +         w <- rep(0, times = n)
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("First weight is 8.5\n")
872s +         # Put even more weight on the zero
872s +         w[1] <- 8.5
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("First weight is Inf\n")
872s +         # All weight on the first value
872s +         w[1] <- Inf
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("Last weight is Inf\n")
872s +         # All weight on the last value
872s +         w[1] <- 1
872s +         w[n] <- Inf
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s + 
872s +         cat("Last weight is NA\n")
872s +         # All weight on the last value
872s +         w[1] <- 1
872s +         w[n] <- NA_real_
872s +         m1 <- fcn(x, w, na.rm = na.rm)
872s +         str(list(m1 = m1))
872s +       } # for (na.rm ...)
872s +     } # for (add_na ...)
872s +   } # for (mode ...)
872s + 
872s +   cat(sprintf("%s()...DONE\n", name))
872s + } # for (name ...)
872s weightedVar()...
872s mode: integer
872s  int [1:15] -3 0 -4 0 0 1 2 1 1 2 ...
872s add_na: FALSE
872s  int [1:15] -3 0 -4 0 0 1 2 1 1 2 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.84
872s All weights are 1
872s List of 1
872s  $ m1: num 3.84
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 4.05
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int NA
872s First weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.84
872s All weights are 1
872s List of 1
872s  $ m1: num 3.84
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 4.05
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int NA
872s First weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s add_na: TRUE
872s  int [1:15] -3 0 -4 0 NA 1 NA 1 1 2 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: int NA
872s All weights are 1
872s List of 1
872s  $ m1: int NA
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: int NA
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int NA
872s First weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.86
872s All weights are 1
872s List of 1
872s  $ m1: num 3.86
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 3.85
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int NA
872s First weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is Inf
872s List of 1
872s  $ m1: int NA
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s mode: double
872s  num [1:15] 3.88 -4.52 2.84 -0.9 1.29 ...
872s add_na: FALSE
872s  num [1:15] 3.88 -4.52 2.84 -0.9 1.29 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 8.93
872s All weights are 1
872s List of 1
872s  $ m1: num 8.93
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 9.48
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 8.93
872s All weights are 1
872s List of 1
872s  $ m1: num 8.93
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 9.48
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s add_na: TRUE
872s  num [1:15] 3.88 -4.52 2.84 -0.9 NA ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num NA
872s All weights are 1
872s List of 1
872s  $ m1: num NA
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num NA
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 9.45
872s All weights are 1
872s List of 1
872s  $ m1: num 9.45
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 10.3
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s weightedVar()...DONE
872s weightedSd()...
872s mode: integer
872s  int [1:15] 2 -1 4 -4 4 3 4 -1 -3 -4 ...
872s add_na: FALSE
872s  int [1:15] 2 -1 4 -4 4 3 4 -1 -3 -4 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 2.91
872s All weights are 1
872s List of 1
872s  $ m1: num 2.91
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.61
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 2.91
872s All weights are 1
872s List of 1
872s  $ m1: num 2.91
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.61
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s add_na: TRUE
872s  int [1:15] 2 -1 4 -4 NA 3 NA -1 -3 -4 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num NA
872s All weights are 1
872s List of 1
872s  $ m1: num NA
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num NA
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 2.81
872s All weights are 1
872s List of 1
872s  $ m1: num 2.81
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.54
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s mode: double
872s  num [1:15] 1.5 -3.56 -2.87 4.97 -2.34 ...
872s add_na: FALSE
872s  num [1:15] 1.5 -3.56 -2.87 4.97 -2.34 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.18
872s All weights are 1
872s List of 1
872s  $ m1: num 3.18
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.88
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.18
872s All weights are 1
872s List of 1
872s  $ m1: num 3.18
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.88
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s add_na: TRUE
872s  num [1:15] 1.5 -3.56 -2.87 4.97 NA ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num NA
872s All weights are 1
872s List of 1
872s  $ m1: num NA
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num NA
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.07
872s All weights are 1
872s List of 1
872s  $ m1: num 3.07
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.7
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num NA
872s First weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is Inf
872s List of 1
872s  $ m1: num NA
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s weightedSd()...DONE
872s weightedMad()...
872s mode: integer
872s  int [1:15] 3 1 1 -4 2 -2 1 1 3 -3 ...
872s add_na: FALSE
872s  int [1:15] 3 1 1 -4 2 -2 1 1 3 -3 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 2.97
872s All weights are 1
872s List of 1
872s  $ m1: num 2.97
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.97
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int 0
872s First weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 2.97
872s All weights are 1
872s List of 1
872s  $ m1: num 2.97
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.97
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int 0
872s First weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s add_na: TRUE
872s  int [1:15] 3 1 1 -4 NA -2 NA 1 3 -3 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num NA
872s All weights are 1
872s List of 1
872s  $ m1: int NA
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: int NA
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int 0
872s First weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 2.97
872s All weights are 1
872s List of 1
872s  $ m1: num 2.97
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.97
872s All weights are 0
872s List of 1
872s  $ m1: int NA
872s First weight is 8.5
872s List of 1
872s  $ m1: int 0
872s First weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is Inf
872s List of 1
872s  $ m1: int 0
872s Last weight is NA
872s List of 1
872s  $ m1: int NA
872s mode: double
872s  num [1:15] 1.846 2.825 -3.917 -4.539 0.774 ...
872s add_na: FALSE
872s  num [1:15] 1.846 2.825 -3.917 -4.539 0.774 ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.49
872s All weights are 1
872s List of 1
872s  $ m1: num 3.49
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 3.04
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num 0
872s First weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.49
872s All weights are 1
872s List of 1
872s  $ m1: num 3.49
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 3.04
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num 0
872s First weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s add_na: TRUE
872s  num [1:15] 1.85 2.83 -3.92 -4.54 NA ...
872s na.rm: FALSE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num NA
872s All weights are 1
872s List of 1
872s  $ m1: num NA
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num NA
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num 0
872s First weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s na.rm: TRUE
872s Weights are not specified (all are 1)
872s List of 1
872s  $ m1: num 3.76
872s All weights are 1
872s List of 1
872s  $ m1: num 3.76
872s First weight is 5
872s  num [1:15] 5 1 1 1 1 1 1 1 1 1 ...
872s List of 1
872s  $ m1: num 2.75
872s All weights are 0
872s List of 1
872s  $ m1: num NA
872s First weight is 8.5
872s List of 1
872s  $ m1: num 0
872s First weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is Inf
872s List of 1
872s  $ m1: num 0
872s Last weight is NA
872s List of 1
872s  $ m1: num NA
872s weightedMad()...DONE
872s > 
872s 
872s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
872s Copyright (C) 2024 The R Foundation for Statistical Computing
872s Platform: arm-unknown-linux-gnueabihf (32-bit)
872s 
872s R is free software and comes with ABSOLUTELY NO WARRANTY.
872s You are welcome to redistribute it under certain conditions.
872s Type 'license()' or 'licence()' for distribution details.
872s 
872s R is a collaborative project with many contributors.
872s Type 'contributors()' for more information and
872s 'citation()' on how to cite R or R packages in publications.
872s 
872s Type 'demo()' for some demos, 'help()' for on-line help, or
872s 'help.start()' for an HTML browser interface to help.
872s Type 'q()' to quit R.
872s 
873s > library("matrixStats")
873s > 
873s > fcns <- list(
873s +   weightedVar = weightedVar,
873s +   weightedSd  = weightedSd,
873s +   weightedMad = weightedMad
873s + )
873s > 
873s > 
873s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
873s > # Subsetted tests
873s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
873s > source("utils/validateIndicesFramework.R")
873s > for (name in names(fcns)) {
873s +   cat(sprintf("subsetted tests on %s()...\n", name))
873s +   fcn <- fcns[[name]]
873s + 
873s +   for (mode in c("numeric", "integer")) {
873s +     x <- runif(6, min = -6, max = 6)
873s +     w <- runif(6, min = 0, max = 6)
873s +     storage.mode(x) <- mode
873s +     storage.mode(w) <- mode
873s +     if (mode == "numeric") w[1] <- Inf
873s + 
873s +     for (idxs in index_cases) {
873s +       validateIndicesTestVector_w(x, w, idxs,
873s +                                   ftest = fcn, fsure = fcn,
873s +                                   na.rm = TRUE)
873s +       validateIndicesTestVector_w(x, w, idxs,
873s +                                   ftest = fcn, fsure = fcn,
873s +                                   na.rm = FALSE)
873s +     }
873s +   }
873s +   cat(sprintf("%s()...DONE\n", name))
873s + }
873s subsetted tests on weightedVar()...
873s weightedVar()...DONE
873s subsetted tests on weightedSd()...
873s weightedSd()...DONE
873s subsetted tests on weightedMad()...
873s weightedMad()...DONE
873s > 
873s 
873s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
873s Copyright (C) 2024 The R Foundation for Statistical Computing
873s Platform: arm-unknown-linux-gnueabihf (32-bit)
873s 
873s R is free software and comes with ABSOLUTELY NO WARRANTY.
873s You are welcome to redistribute it under certain conditions.
873s Type 'license()' or 'licence()' for distribution details.
873s 
873s R is a collaborative project with many contributors.
873s Type 'contributors()' for more information and
873s 'citation()' on how to cite R or R packages in publications.
873s 
873s Type 'demo()' for some demos, 'help()' for on-line help, or
873s 'help.start()' for an HTML browser interface to help.
873s Type 'q()' to quit R.
873s 
873s > library("matrixStats")
873s > 
873s > x_OP_y_R <- function(x, y, OP, na.rm = FALSE) {
873s +   if (na.rm) {
873s +     xnok <- is.na(x)
873s +     ynok <- is.na(y)
873s +     anok <- xnok & ynok
873s +     unit <- switch(OP,
873s +       "+" = 0,
873s +       "-" = NA_real_,
873s +       "*" = 1,
873s +       "/" = NA_real_,
873s +       stop("Unknown 'OP' operator: ", OP)
873s +     )
873s +     x[xnok] <- unit
873s +     y[ynok] <- unit
873s +   }
873s + 
873s +   ans <- switch(OP,
873s +     "+" = x + y,
873s +     "-" = x - y,
873s +     "*" = x * y,
873s +     "/" = x / y,
873s +     stop("Unknown 'OP' operator: ", OP)
873s +   )
873s + 
873s +   if (na.rm) {
873s +     ans[anok] <- NA_real_
873s +   }
873s + 
873s +   ans
873s + } # x_OP_y_R()
873s > 
873s > 
873s > 
873s > t_tx_OP_y_R <- function(x, y, OP, na.rm = FALSE) {
873s +   t(x_OP_y_R(x = t(x), y = y, OP = OP, na.rm = na.rm))
873s + }
873s > 
873s > 
873s > 
873s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
873s > # No missing values
873s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
873s > x <- matrix(1:16, nrow = 4, ncol = 4)
873s > y <- 1:nrow(x)
873s > storage.mode(y) <- storage.mode(x)
873s > 
873s > for (OP in c("+", "-", "*", "/")) {
873s +   for (na.rm in c(FALSE, TRUE)) {
873s +     cat(sprintf("OP = '%s', na.rm = %s\n", OP, na.rm))
873s + 
873s +     a0 <- x_OP_y_R(x, y, OP, na.rm = na.rm)
873s +     a1 <- x_OP_y(x, y, OP, na.rm = na.rm)
873s +     str(a1)
873s +     stopifnot(all.equal(a1, a0))
873s + 
873s +     b0 <- t_tx_OP_y_R(x, y, OP, na.rm = na.rm)
873s +     b1 <- t_tx_OP_y(x, y, OP, na.rm = na.rm)
873s +     str(b1)
873s +     stopifnot(all.equal(b1, b0))
873s +   }
873s + }
873s OP = '+', na.rm = FALSE
873s  int [1:4, 1:4] 2 4 6 8 6 8 10 12 10 12 ...
873s  int [1:4, 1:4] 2 3 4 5 7 8 9 10 12 13 ...
873s OP = '+', na.rm = TRUE
873s  int [1:4, 1:4] 2 4 6 8 6 8 10 12 10 12 ...
873s  int [1:4, 1:4] 2 3 4 5 7 8 9 10 12 13 ...
873s OP = '-', na.rm = FALSE
873s  int [1:4, 1:4] 0 0 0 0 4 4 4 4 8 8 ...
873s  int [1:4, 1:4] 0 1 2 3 3 4 5 6 6 7 ...
873s OP = '-', na.rm = TRUE
873s  int [1:4, 1:4] 0 0 0 0 4 4 4 4 8 8 ...
873s  int [1:4, 1:4] 0 1 2 3 3 4 5 6 6 7 ...
873s OP = '*', na.rm = FALSE
873s  int [1:4, 1:4] 1 4 9 16 5 12 21 32 9 20 ...
873s  int [1:4, 1:4] 1 2 3 4 10 12 14 16 27 30 ...
873s OP = '*', na.rm = TRUE
873s  int [1:4, 1:4] 1 4 9 16 5 12 21 32 9 20 ...
873s  int [1:4, 1:4] 1 2 3 4 10 12 14 16 27 30 ...
873s OP = '/', na.rm = FALSE
873s  num [1:4, 1:4] 1 1 1 1 5 ...
873s  num [1:4, 1:4] 1 2 3 4 2.5 ...
873s OP = '/', na.rm = TRUE
873s  num [1:4, 1:4] 1 1 1 1 5 ...
873s  num [1:4, 1:4] 1 2 3 4 2.5 ...
873s > 
873s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
873s > # Missing values in x, y, or both.
873s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
873s > for (which in c("x", "y", "both")) {
873s +   x <- matrix(1:16, nrow = 4, ncol = 4)
873s +   y <- 1:nrow(x)
873s +   storage.mode(y) <- storage.mode(x)
873s + 
873s +   if (which == "x") {
873s +     x[3:6] <- NA_real_
873s +   } else if (which == "y") {
873s +     y[c(1, 3)] <- NA_real_
873s +   } else if (which == "both") {
873s +     x[3:6] <- NA_real_
873s +     y[c(1, 3)] <- NA_real_
873s +   }
873s + 
873s +   for (OP in c("+", "-", "*", "/")) {
873s +     for (na.rm in c(FALSE, TRUE)) {
873s +       cat(sprintf("OP = '%s', na.rm = %s\n", OP, na.rm))
873s +       a0 <- x_OP_y_R(x, y, OP, na.rm = na.rm)
873s +       a1 <- x_OP_y(x, y, OP, na.rm = na.rm)
873s +       str(a1)
873s +       stopifnot(all.equal(a1, a0))
873s + 
873s +       b0 <- t_tx_OP_y_R(x, y, OP, na.rm = na.rm)
873s +       b1 <- t_tx_OP_y(x, y, OP, na.rm = na.rm)
873s +       str(b1)
873s +       stopifnot(all.equal(b1, b0))
873s +     }
873s +   }
873s + }
873s OP = '+', na.rm = FALSE
873s  num [1:4, 1:4] 2 4 NA NA NA NA 10 12 10 12 ...
873s  num [1:4, 1:4] 2 3 NA NA NA NA 9 10 12 13 ...
873s OP = '+', na.rm = TRUE
873s  num [1:4, 1:4] 2 4 3 4 1 2 10 12 10 12 ...
873s  num [1:4, 1:4] 2 3 1 1 2 2 9 10 12 13 ...
873s OP = '-', na.rm = FALSE
873s  num [1:4, 1:4] 0 0 NA NA NA NA 4 4 8 8 ...
873s  num [1:4, 1:4] 0 1 NA NA NA NA 5 6 6 7 ...
873s OP = '-', na.rm = TRUE
873s  num [1:4, 1:4] 0 0 NA NA NA NA 4 4 8 8 ...
873s  num [1:4, 1:4] 0 1 NA NA NA NA 5 6 6 7 ...
873s OP = '*', na.rm = FALSE
873s  num [1:4, 1:4] 1 4 NA NA NA NA 21 32 9 20 ...
873s  num [1:4, 1:4] 1 2 NA NA NA NA 14 16 27 30 ...
873s OP = '*', na.rm = TRUE
873s  num [1:4, 1:4] 1 4 3 4 1 2 21 32 9 20 ...
873s  num [1:4, 1:4] 1 2 1 1 2 2 14 16 27 30 ...
873s OP = '/', na.rm = FALSE
873s  num [1:4, 1:4] 1 1 NA NA NA ...
873s  num [1:4, 1:4] 1 2 NA NA NA ...
873s OP = '/', na.rm = TRUE
873s  num [1:4, 1:4] 1 1 NA NA NA ...
873s  num [1:4, 1:4] 1 2 NA NA NA ...
873s OP = '+', na.rm = FALSE
873s  num [1:4, 1:4] NA 4 NA 8 NA 8 NA 12 NA 12 ...
873s  num [1:4, 1:4] NA NA NA NA 7 8 9 10 NA NA ...
873s OP = '+', na.rm = TRUE
873s  num [1:4, 1:4] 1 4 3 8 5 8 7 12 9 12 ...
873s  num [1:4, 1:4] 1 2 3 4 7 8 9 10 9 10 ...
873s OP = '-', na.rm = FALSE
873s  num [1:4, 1:4] NA 0 NA 0 NA 4 NA 4 NA 8 ...
873s  num [1:4, 1:4] NA NA NA NA 3 4 5 6 NA NA ...
873s OP = '-', na.rm = TRUE
873s  num [1:4, 1:4] NA 0 NA 0 NA 4 NA 4 NA 8 ...
873s  num [1:4, 1:4] NA NA NA NA 3 4 5 6 NA NA ...
873s OP = '*', na.rm = FALSE
873s  num [1:4, 1:4] NA 4 NA 16 NA 12 NA 32 NA 20 ...
873s  num [1:4, 1:4] NA NA NA NA 10 12 14 16 NA NA ...
873s OP = '*', na.rm = TRUE
873s  num [1:4, 1:4] 1 4 3 16 5 12 7 32 9 20 ...
873s  num [1:4, 1:4] 1 2 3 4 10 12 14 16 9 10 ...
873s OP = '/', na.rm = FALSE
873s  num [1:4, 1:4] NA 1 NA 1 NA 3 NA 2 NA 5 ...
874s  num [1:4, 1:4] NA NA NA NA 2.5 3 3.5 4 NA NA ...
874s OP = '/', na.rm = TRUE
874s  num [1:4, 1:4] NA 1 NA 1 NA 3 NA 2 NA 5 ...
874s  num [1:4, 1:4] NA NA NA NA 2.5 3 3.5 4 NA NA ...
874s OP = '+', na.rm = FALSE
874s  num [1:4, 1:4] NA 4 NA NA NA NA NA 12 NA 12 ...
874s  num [1:4, 1:4] NA NA NA NA NA NA 9 10 NA NA ...
874s OP = '+', na.rm = TRUE
874s  num [1:4, 1:4] 1 4 NA 4 NA 2 7 12 9 12 ...
874s  num [1:4, 1:4] 1 2 NA NA 2 2 9 10 9 10 ...
874s OP = '-', na.rm = FALSE
874s  num [1:4, 1:4] NA 0 NA NA NA NA NA 4 NA 8 ...
874s  num [1:4, 1:4] NA NA NA NA NA NA 5 6 NA NA ...
874s OP = '-', na.rm = TRUE
874s  num [1:4, 1:4] NA 0 NA NA NA NA NA 4 NA 8 ...
874s  num [1:4, 1:4] NA NA NA NA NA NA 5 6 NA NA ...
874s OP = '*', na.rm = FALSE
874s  num [1:4, 1:4] NA 4 NA NA NA NA NA 32 NA 20 ...
874s  num [1:4, 1:4] NA NA NA NA NA NA 14 16 NA NA ...
874s OP = '*', na.rm = TRUE
874s  num [1:4, 1:4] 1 4 NA 4 NA 2 7 32 9 20 ...
874s  num [1:4, 1:4] 1 2 NA NA 2 2 14 16 9 10 ...
874s OP = '/', na.rm = FALSE
874s  num [1:4, 1:4] NA 1 NA NA NA NA NA 2 NA 5 ...
874s  num [1:4, 1:4] NA NA NA NA NA NA 3.5 4 NA NA ...
874s OP = '/', na.rm = TRUE
874s  num [1:4, 1:4] NA 1 NA NA NA NA NA 2 NA 5 ...
874s  num [1:4, 1:4] NA NA NA NA NA NA 3.5 4 NA NA ...
874s > 
874s > 
874s > 
874s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
874s > # Length differences
874s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
874s > x <- matrix(1:8, nrow = 2, ncol = 4)
874s > y <- 1:ncol(x)
874s > storage.mode(y) <- storage.mode(x)
874s > 
874s > for (OP in c("+", "-", "*", "/")) {
874s +   for (na.rm in c(FALSE, TRUE)) {
874s +     cat(sprintf("OP = '%s', na.rm = %s\n", OP, na.rm))
874s + 
874s +     a0 <- x_OP_y_R(x, y, OP, na.rm = na.rm)
874s +     a1 <- x_OP_y(x, y, OP, na.rm = na.rm)
874s +     str(a1)
874s +     stopifnot(all.equal(a1, a0))
874s + 
874s +     b0 <- t_tx_OP_y_R(x, y, OP, na.rm = na.rm)
874s +     b1 <- t_tx_OP_y(x, y, OP, na.rm = na.rm)
874s +     str(b1)
874s +     stopifnot(all.equal(b1, b0))
874s +   }
874s + }
874s OP = '+', na.rm = FALSE
874s  int [1:2, 1:4] 2 4 6 8 6 8 10 12
874s  int [1:2, 1:4] 2 3 5 6 8 9 11 12
874s OP = '+', na.rm = TRUE
874s  int [1:2, 1:4] 2 4 6 8 6 8 10 12
874s  int [1:2, 1:4] 2 3 5 6 8 9 11 12
874s OP = '-', na.rm = FALSE
874s  int [1:2, 1:4] 0 0 0 0 4 4 4 4
874s  int [1:2, 1:4] 0 1 1 2 2 3 3 4
874s OP = '-', na.rm = TRUE
874s  int [1:2, 1:4] 0 0 0 0 4 4 4 4
874s  int [1:2, 1:4] 0 1 1 2 2 3 3 4
874s OP = '*', na.rm = FALSE
874s  int [1:2, 1:4] 1 4 9 16 5 12 21 32
874s  int [1:2, 1:4] 1 2 6 8 15 18 28 32
874s OP = '*', na.rm = TRUE
874s  int [1:2, 1:4] 1 4 9 16 5 12 21 32
874s  int [1:2, 1:4] 1 2 6 8 15 18 28 32
874s OP = '/', na.rm = FALSE
874s  num [1:2, 1:4] 1 1 1 1 5 ...
874s  num [1:2, 1:4] 1 2 1.5 2 1.67 ...
874s OP = '/', na.rm = TRUE
874s  num [1:2, 1:4] 1 1 1 1 5 ...
874s  num [1:2, 1:4] 1 2 1.5 2 1.67 ...
874s > 
874s > 
874s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
874s > # All missing values
874s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
874s > xs <- list(
874s +   A = matrix(1:2, nrow = 2, ncol = 2),
874s +   B = matrix(NA_integer_, nrow = 2, ncol = 2)
874s + )
874s > ys <- list(
874s +   A = 1L,
874s +   B = NA_integer_
874s + )
874s > 
874s > for (x in xs) {
874s +   for (y in ys) {
874s +     for (mode in c("logical", "integer", "double")) {
874s +       storage.mode(x) <- mode
874s +       storage.mode(y) <- mode
874s +       str(list(x = x, y = y))
874s + 
874s +       for (OP in c("+", "-", "*", "/")) {
874s +         for (na.rm in c(FALSE, TRUE)) {
874s +           cat(sprintf("mode = '%s', OP = '%s', na.rm = %s\n", mode, OP, na.rm))
874s +           suppressWarnings({
874s +             z0 <- x_OP_y_R(x, y, OP, na.rm = na.rm)
874s +             z <- x_OP_y(x, y, OP, na.rm = na.rm)
874s +           })
874s +           str(z)
874s +           stopifnot(all.equal(z, z0))
874s +         }
874s +       }
874s +     } # for (mode ...)
874s +   } # for (y ...)
874s + } # for (x ...)
874s List of 2
874s  $ x: logi [1:2, 1:2] TRUE TRUE TRUE TRUE
874s  $ y: logi TRUE
874s mode = 'logical', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] 2 2 2 2
874s mode = 'logical', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] 2 2 2 2
874s mode = 'logical', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] 0 0 0 0
874s mode = 'logical', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] 0 0 0 0
874s mode = 'logical', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s List of 2
874s  $ x: int [1:2, 1:2] 1 1 1 1
874s  $ y: int 1
874s mode = 'integer', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] 2 2 2 2
874s mode = 'integer', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] 2 2 2 2
874s mode = 'integer', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] 0 0 0 0
874s mode = 'integer', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] 0 0 0 0
874s mode = 'integer', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s List of 2
874s  $ x: num [1:2, 1:2] 1 1 1 1
874s  $ y: num 1
874s mode = 'double', OP = '+', na.rm = FALSE
874s  num [1:2, 1:2] 2 2 2 2
874s mode = 'double', OP = '+', na.rm = TRUE
874s  num [1:2, 1:2] 2 2 2 2
874s mode = 'double', OP = '-', na.rm = FALSE
874s  num [1:2, 1:2] 0 0 0 0
874s mode = 'double', OP = '-', na.rm = TRUE
874s  num [1:2, 1:2] 0 0 0 0
874s mode = 'double', OP = '*', na.rm = FALSE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '*', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s List of 2
874s  $ x: logi [1:2, 1:2] TRUE TRUE TRUE TRUE
874s  $ y: logi NA
874s mode = 'logical', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: int [1:2, 1:2] 1 1 1 1
874s  $ y: int NA
874s mode = 'integer', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: num [1:2, 1:2] 1 1 1 1
874s  $ y: num NA
874s mode = 'double', OP = '+', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '+', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '-', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '-', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '*', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '*', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: logi [1:2, 1:2] NA NA NA NA
874s  $ y: logi TRUE
874s mode = 'logical', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'logical', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: int [1:2, 1:2] NA NA NA NA
874s  $ y: int 1
874s mode = 'integer', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] 1 1 1 1
874s mode = 'integer', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: num [1:2, 1:2] NA NA NA NA
874s  $ y: num 1
874s mode = 'double', OP = '+', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '+', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '-', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '-', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '*', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '*', na.rm = TRUE
874s  num [1:2, 1:2] 1 1 1 1
874s mode = 'double', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: logi [1:2, 1:2] NA NA NA NA
874s  $ y: logi NA
874s mode = 'logical', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'logical', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: int [1:2, 1:2] NA NA NA NA
874s  $ y: int NA
874s mode = 'integer', OP = '+', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '+', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '-', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '-', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '*', na.rm = FALSE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '*', na.rm = TRUE
874s  int [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'integer', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s List of 2
874s  $ x: num [1:2, 1:2] NA NA NA NA
874s  $ y: num NA
874s mode = 'double', OP = '+', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '+', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '-', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '-', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '*', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '*', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '/', na.rm = FALSE
874s  num [1:2, 1:2] NA NA NA NA
874s mode = 'double', OP = '/', na.rm = TRUE
874s  num [1:2, 1:2] NA NA NA NA
874s > 
874s 
874s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
874s Copyright (C) 2024 The R Foundation for Statistical Computing
874s Platform: arm-unknown-linux-gnueabihf (32-bit)
874s 
874s R is free software and comes with ABSOLUTELY NO WARRANTY.
874s You are welcome to redistribute it under certain conditions.
874s Type 'license()' or 'licence()' for distribution details.
874s 
874s R is a collaborative project with many contributors.
874s Type 'contributors()' for more information and
874s 'citation()' on how to cite R or R packages in publications.
874s 
874s Type 'demo()' for some demos, 'help()' for on-line help, or
874s 'help.start()' for an HTML browser interface to help.
874s Type 'q()' to quit R.
874s 
874s > library("matrixStats")
874s > 
874s > x_OP_y_R <- function(x, y, OP, na.rm = FALSE) {
874s +   if (na.rm) {
874s +     xnok <- is.na(x)
874s +     ynok <- is.na(y)
874s +     anok <- xnok & ynok
874s +     unit <- switch(OP,
874s +       "+" = 0,
874s +       "-" = NA_real_,
874s +       "*" = 1,
874s +       "/" = NA_real_,
874s +       stop("Unknown 'OP' operator: ", OP)
874s +     )
874s +     x[xnok] <- unit
874s +     y[ynok] <- unit
874s +   }
874s + 
874s +   ans <- switch(OP,
874s +     "+" = x + y,
874s +     "-" = x - y,
874s +     "*" = x * y,
874s +     "/" = x / y,
874s +     stop("Unknown 'OP' operator: ", OP)
874s +   )
874s + 
874s +   if (na.rm) {
874s +     ans[anok] <- NA_real_
874s +   }
874s + 
874s +   ans
874s + } # x_OP_y_R()
874s > 
874s > 
874s > t_tx_OP_y_R <- function(x, y, OP, na.rm = FALSE) {
874s +   t(x_OP_y_R(x = t(x), y = y, OP = OP, na.rm = na.rm))
874s + }
874s > 
874s > 
874s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
874s > # Subsetted tests
874s > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
874s > source("utils/validateIndicesFramework.R")
874s > for (OP in c("+", "-", "*", "/")) {
874s +   for (mode in c("numeric", "integer", "logical")) {
874s +     x <- matrix(runif(6 * 6, min = -6, max = 6), nrow = 6L, ncol = 6L)
874s +     y <- runif(6, min = 0, max = 6)
874s +     storage.mode(x) <- mode
874s +     storage.mode(y) <- mode
874s +     if (mode == "numeric") y[1] <- Inf
874s + 
874s +     for (xrows in index_cases) {
874s +       for (xcols in index_cases) {
874s +         if (is.null(xrows)) xrows <- seq_len(nrow(x))
874s +         if (is.null(xcols)) xcols <- seq_len(ncol(x))
874s + 
874s +         for (yidxs in list(xrows, xcols)) {
874s +           for (na.rm in c(TRUE, FALSE)) {
874s + 
874s +             suppressWarnings({
874s +               actual <- tryCatch(
874s +                 x_OP_y(x, y, OP, xrows = xrows, xcols = xcols, yidxs = yidxs,
874s +                        na.rm = na.rm),
874s +                 error = function(c) "error"
874s +               )
874s + 
874s +               expect <- tryCatch(
874s +                 x_OP_y_R(x[xrows, xcols, drop = FALSE], y[yidxs], OP,
874s +                          na.rm = na.rm),
874s +                 error = function(c) "error"
874s +               )
874s +             })
874s +             stopifnot(all.equal(as.vector(actual), as.vector(expect)))
874s + 
874s +             suppressWarnings({
874s +               actual <- tryCatch(
874s +                 t_tx_OP_y(x, y, OP, xrows = xrows, xcols = xcols, yidxs = yidxs,
874s +                           na.rm = na.rm),
874s +                 error = function(c) "error"
874s +               )
874s + 
874s +               expect <- tryCatch(
874s +                 t_tx_OP_y_R(x[xrows, xcols, drop = FALSE], y[yidxs], OP,
874s +                             na.rm = na.rm),
874s +                 error = function(c) "error"
874s +               )
874s +             })
874s +             stopifnot(all.equal(as.vector(actual), as.vector(expect)))
874s +           }
874s +         }
874s +       }
874s +     }
874s +   }
874s + }
887s > 
887s 
887s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
887s Copyright (C) 2024 The R Foundation for Statistical Computing
887s Platform: arm-unknown-linux-gnueabihf (32-bit)
887s 
887s R is free software and comes with ABSOLUTELY NO WARRANTY.
887s You are welcome to redistribute it under certain conditions.
887s Type 'license()' or 'licence()' for distribution details.
887s 
887s R is a collaborative project with many contributors.
887s Type 'contributors()' for more information and
887s 'citation()' on how to cite R or R packages in publications.
887s 
887s Type 'demo()' for some demos, 'help()' for on-line help, or
887s 'help.start()' for an HTML browser interface to help.
887s Type 'q()' to quit R.
887s 
887s > ## These tests need to be last of all tests, otherwise
887s > ## covr::package_coverage() gives an error.
887s > cat("1. Loading package\n")
887s 1. Loading package
887s > loadNamespace("matrixStats")
887s <environment: namespace:matrixStats>
887s > stopifnot("matrixStats" %in% loadedNamespaces())
887s > 
887s > cat("2. Unloading package\n")
887s 2. Unloading package
887s > unloadNamespace("matrixStats")
887s > stopifnot(!"matrixStats" %in% loadedNamespaces())
887s > 
887s > if (FALSE) {
887s +   ## 'covr' gives "Error in library("matrixStats") :
887s +   ## there is no package called 'matrixStats'" here, cf.
887s +   ## https://travis-ci.org/HenrikBengtsson/matrixStats/builds/48015577
887s + 
887s +   cat("3. Attaching package\n")
887s +   library("matrixStats")
887s +   stopifnot("package:matrixStats" %in% search())
887s + 
887s +   cat("4. Detaching package\n")
887s +   detach("package:matrixStats")
887s +   stopifnot(!"package:matrixStats" %in% search())
887s +   stopifnot("matrixStats" %in% loadedNamespaces())
887s + 
887s +   cat("5. Unloading package\n")
887s +   unloadNamespace("matrixStats")
887s +   stopifnot(!"matrixStats" %in% loadedNamespaces())
887s + 
887s +   cat("6. Attaching package (again)\n")
887s +   library("matrixStats")
887s +   stopifnot("package:matrixStats" %in% search())
887s + 
887s +   cat("7. Detaching package (again)\n")
887s +   detach("package:matrixStats")
887s +   stopifnot(!"package:matrixStats" %in% search())
887s +   stopifnot("matrixStats" %in% loadedNamespaces())
887s + }
887s > 
887s > cat("7. DONE\n")
887s 7. DONE
887s > 
887s autopkgtest [12:32:47]: test run-unit-test: -----------------------]
903s run-unit-test        PASS
903s autopkgtest [12:33:03]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
906s autopkgtest [12:33:06]: test pkg-r-autopkgtest: preparing testbed
956s autopkgtest [12:33:56]: testbed dpkg architecture: armhf
957s autopkgtest [12:33:57]: testbed apt version: 2.7.12
957s autopkgtest [12:33:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup
959s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
960s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4019 kB]
960s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B]
960s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
960s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB]
960s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [669 kB]
960s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B]
960s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B]
960s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B]
960s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4075 kB]
960s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B]
960s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [49.1 kB]
960s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B]
967s Fetched 9502 kB in 2s (3858 kB/s)
968s Reading package lists...
974s Get:1 http://ports.ubuntu.com/ubuntu-ports noble-proposed InRelease [117 kB]
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974s Get:3 http://ports.ubuntu.com/ubuntu-ports noble-proposed/main armhf c-n-f Metadata [2492 B]
974s Get:4 http://ports.ubuntu.com/ubuntu-ports noble-proposed/universe armhf Packages [4075 kB]
974s Get:5 http://ports.ubuntu.com/ubuntu-ports noble-proposed/universe armhf c-n-f Metadata [7776 B]
974s Get:6 http://ports.ubuntu.com/ubuntu-ports noble-proposed/restricted armhf Packages [1372 B]
974s Get:7 http://ports.ubuntu.com/ubuntu-ports noble-proposed/restricted armhf c-n-f Metadata [116 B]
974s Get:8 http://ports.ubuntu.com/ubuntu-ports noble-proposed/multiverse armhf Packages [49.1 kB]
974s Get:9 http://ports.ubuntu.com/ubuntu-ports noble-proposed/multiverse armhf c-n-f Metadata [116 B]
981s Fetched 4922 kB in 2s (2697 kB/s)
981s Reading package lists...
987s sh: 1: dhclient: not found
988s tee: /proc/self/fd/2: Permission denied
1016s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
1016s Hit:2 http://ports.ubuntu.com/ubuntu-ports noble-proposed InRelease
1016s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
1016s Hit:4 http://ports.ubuntu.com/ubuntu-ports noble InRelease
1016s Hit:5 http://ftpmaster.internal/ubuntu noble-security InRelease
1016s Hit:6 http://ports.ubuntu.com/ubuntu-ports noble-updates InRelease
1016s Hit:7 http://ports.ubuntu.com/ubuntu-ports noble-backports InRelease
1016s Hit:8 http://ftpmaster.internal/ubuntu noble-proposed InRelease
1016s Hit:9 http://ports.ubuntu.com/ubuntu-ports noble-security InRelease
1020s Reading package lists...
1020s Reading package lists...
1021s Building dependency tree...
1021s Reading state information...
1023s Calculating upgrade...
1024s The following packages were automatically installed and are no longer required:
1024s   linux-headers-6.8.0-11 python3-distutils python3-lib2to3
1024s Use 'apt autoremove' to remove them.
1025s The following packages will be REMOVED:
1025s   libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1
1025s   libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11
1025s   libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2
1025s   libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0
1025s   libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic
1025s The following NEW packages will be installed:
1025s   libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64
1025s   libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
1025s   libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64
1026s   libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64
1026s   libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64
1026s   libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20
1026s   linux-headers-6.8.0-20-generic xdg-user-dirs
1026s The following packages have been kept back:
1026s   multipath-tools
1026s The following packages will be upgraded:
1026s   apparmor apt apt-utils base-files bind9-dnsutils bind9-host bind9-libs
1026s   binutils binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils
1026s   bsdutils btrfs-progs cloud-init coreutils cryptsetup-bin curl dbus dbus-bin
1026s   dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session
1026s   debianutils dhcpcd-base dirmngr dmsetup dpkg dpkg-dev e2fsprogs
1026s   e2fsprogs-l10n eject fdisk file fonts-ubuntu-console ftp fwupd gawk
1026s   gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg
1026s   gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv
1026s   groff-base ibverbs-providers inetutils-telnet info initramfs-tools
1026s   initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd
1026s   kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils
1026s   libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
1026s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
1026s   libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libbsd0 libc-bin libc6
1026s   libcap-ng0 libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3
1026s   libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7
1026s   libexpat1 libfdisk1 libfido2-1 libftdi1-2 libfwupd2 libgcc-s1
1026s   libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0
1026s   libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0
1026s   libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0
1026s   libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc
1026s   libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2
1026s   libnss-systemd libpam-modules libpam-modules-bin libpam-runtime
1026s   libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0
1026s   libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib
1026s   libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal
1026s   libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1
1026s   libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1
1026s   libsemanage-common libsemanage2 libsframe1 libslang2 libsmartcols1
1026s   libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared libsystemd0
1026s   libtext-charwidth-perl libtext-iconv-perl libtirpc-common libudev1
1026s   libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1
1026s   linux-headers-generic locales logsave lshw lsof man-db motd-news-config
1026s   mount mtr-tiny netplan-generator netplan.io openssh-client openssh-server
1026s   openssh-sftp-server openssl parted perl perl-base perl-modules-5.38
1026s   pinentry-curses plymouth plymouth-theme-ubuntu-text procps psmisc
1026s   python-apt-common python3 python3-apt python3-cryptography python3-dbus
1026s   python3-distutils python3-gdbm python3-gi python3-lib2to3 python3-markupsafe
1026s   python3-minimal python3-netplan python3-pkg-resources python3-pyrsistent
1026s   python3-setuptools python3-typing-extensions python3-yaml python3.11
1026s   python3.11-minimal python3.12 python3.12-minimal readline-common rsync
1026s   rsyslog shared-mime-info sudo systemd systemd-dev systemd-resolved
1026s   systemd-sysv systemd-timesyncd tcpdump telnet tnftp ubuntu-minimal
1026s   ubuntu-pro-client ubuntu-pro-client-l10n ubuntu-standard udev udisks2
1026s   usb.ids util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g
1026s 246 upgraded, 32 newly installed, 30 to remove and 1 not upgraded.
1026s Need to get 109 MB of archives.
1026s After this operation, 85.0 MB of additional disk space will be used.
1026s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf motd-news-config all 13ubuntu8 [5098 B]
1026s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB]
1026s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB]
1026s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB]
1026s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.39-0ubuntu6 [2827 kB]
1026s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-files armhf 13ubuntu8 [73.9 kB]
1026s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB]
1026s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB]
1026s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB]
1026s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB]
1026s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB]
1026s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB]
1026s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB]
1027s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB]
1027s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB]
1027s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB]
1027s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB]
1027s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB]
1027s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB]
1027s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB]
1027s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB]
1027s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B]
1027s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB]
1027s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB]
1027s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB]
1027s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB]
1027s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB]
1027s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB]
1027s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB]
1027s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB]
1027s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB]
1027s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB]
1027s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB]
1027s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB]
1027s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB]
1027s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB]
1027s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB]
1027s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB]
1027s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB]
1027s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB]
1027s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB]
1027s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB]
1027s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-minimal armhf 1.536build1 [10.7 kB]
1027s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B]
1027s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB]
1027s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB]
1027s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB]
1027s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB]
1027s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B]
1027s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB]
1027s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB]
1027s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB]
1027s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB]
1027s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB]
1027s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-2 [4350 kB]
1028s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.2 [19.4 kB]
1028s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.2 [216 kB]
1028s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB]
1028s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB]
1028s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB]
1028s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB]
1028s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB]
1028s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B]
1028s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB]
1028s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB]
1028s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
1028s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu1.1 [17.1 kB]
1028s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB]
1028s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB]
1028s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B]
1028s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB]
1028s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB]
1028s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB]
1028s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB]
1029s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB]
1029s Get:76 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B]
1029s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB]
1029s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB]
1029s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB]
1029s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB]
1029s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB]
1029s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB]
1029s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4 [129 kB]
1029s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB]
1029s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB]
1029s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB]
1029s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB]
1029s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB]
1029s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.7 [162 kB]
1029s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB]
1029s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB]
1029s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB]
1029s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB]
1029s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB]
1029s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB]
1029s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu8 [290 kB]
1029s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-2 [123 kB]
1029s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
1029s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB]
1029s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB]
1029s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu2 [137 kB]
1029s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB]
1030s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB]
1030s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB]
1030s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB]
1030s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB]
1030s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB]
1030s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB]
1030s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB]
1030s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB]
1030s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB]
1031s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB]
1031s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B]
1031s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB]
1031s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB]
1031s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB]
1031s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB]
1031s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB]
1031s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB]
1031s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB]
1031s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB]
1031s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB]
1031s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB]
1031s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB]
1031s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B]
1031s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB]
1031s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB]
1031s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB]
1031s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB]
1031s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB]
1031s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB]
1031s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB]
1031s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB]
1031s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB]
1031s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB]
1031s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB]
1031s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB]
1031s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB]
1031s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB]
1031s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB]
1031s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB]
1031s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB]
1031s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB]
1031s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB]
1031s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4 [56.4 kB]
1031s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB]
1031s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.7 [19.8 kB]
1031s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
1031s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
1031s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB]
1031s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB]
1031s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB]
1031s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B]
1031s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB]
1031s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB]
1031s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB]
1031s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB]
1031s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB]
1031s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
1031s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB]
1031s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB]
1031s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB]
1031s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB]
1031s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB]
1031s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B]
1031s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB]
1031s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB]
1031s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu1 [119 kB]
1031s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-6ubuntu1 [320 kB]
1031s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-6ubuntu1 [31.5 kB]
1032s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-6ubuntu1 [78.6 kB]
1032s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
1032s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB]
1032s Get:174 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.39-0ubuntu6 [530 kB]
1032s Get:175 http://ftpmaster.internal/ubuntu noble/main armhf locales all 2.39-0ubuntu6 [4232 kB]
1032s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu2 [49.0 kB]
1032s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu2 [700 kB]
1032s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu6 [665 kB]
1032s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu6 [385 kB]
1032s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B]
1032s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB]
1032s Get:182 http://ftpmaster.internal/ubuntu noble/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB]
1032s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB]
1032s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB]
1032s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB]
1032s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B]
1032s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB]
1032s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB]
1032s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB]
1032s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB]
1032s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B]
1032s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB]
1032s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB]
1032s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB]
1032s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B]
1032s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB]
1032s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B]
1032s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB]
1032s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB]
1032s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB]
1032s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB]
1032s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB]
1032s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB]
1032s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB]
1032s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB]
1032s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB]
1032s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB]
1032s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB]
1033s Get:209 http://ftpmaster.internal/ubuntu noble/main armhf debianutils armhf 5.17 [88.9 kB]
1033s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB]
1033s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu8 [219 kB]
1033s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu8 [296 kB]
1033s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB]
1033s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB]
1033s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB]
1033s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB]
1033s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB]
1033s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB]
1033s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB]
1033s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB]
1033s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB]
1033s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB]
1033s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB]
1033s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB]
1033s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB]
1033s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB]
1033s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-21ubuntu1 [48.3 kB]
1033s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB]
1033s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB]
1033s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-6ubuntu1 [13.8 kB]
1033s Get:231 http://ftpmaster.internal/ubuntu noble/main armhf libbsd0 armhf 0.12.1-1 [36.6 kB]
1033s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
1033s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB]
1033s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsyslog armhf 8.2312.0-3ubuntu7 [460 kB]
1033s Get:235 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB]
1033s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu6 [62.5 kB]
1033s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB]
1033s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B]
1033s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB]
1033s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB]
1033s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B]
1033s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB]
1033s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB]
1033s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B]
1033s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB]
1033s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB]
1033s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B]
1033s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB]
1033s Get:249 http://ftpmaster.internal/ubuntu noble/main armhf ubuntu-standard armhf 1.536build1 [10.7 kB]
1033s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB]
1033s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB]
1033s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB]
1033s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB]
1033s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB]
1033s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B]
1033s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB]
1033s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB]
1033s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB]
1033s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB]
1033s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB]
1033s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB]
1033s Get:262 http://ftpmaster.internal/ubuntu noble/main armhf fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
1033s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB]
1033s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB]
1033s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB]
1033s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB]
1033s Get:267 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB]
1033s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB]
1033s Get:269 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB]
1033s Get:270 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB]
1033s Get:271 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB]
1033s Get:272 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-distutils all 3.12.2-3ubuntu1.1 [133 kB]
1033s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB]
1033s Get:274 http://ftpmaster.internal/ubuntu noble/main armhf python3-markupsafe armhf 2.1.5-1build1 [12.1 kB]
1033s Get:275 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB]
1033s Get:276 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB]
1033s Get:277 http://ftpmaster.internal/ubuntu noble/main armhf cloud-init all 24.1.2-0ubuntu1 [597 kB]
1033s Get:278 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB]
1037s Preconfiguring packages ...
1037s Fetched 109 MB in 8s (13.7 MB/s)
1037s (Reading database ... 
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(Reading database ... 58620 files and directories currently installed.)
1037s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ...
1037s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ...
1037s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ...
1037s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
1037s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ...
1037s (Reading database ... 
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(Reading database ... 58620 files and directories currently installed.)
1037s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ...
1037s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
1037s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ...
1038s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58620 files and directories currently installed.)
1038s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ...
1038s Unpacking libstdc++6:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
1038s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ...
1038s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58620 files and directories currently installed.)
1038s Preparing to unpack .../libc6_2.39-0ubuntu6_armhf.deb ...
1038s Unpacking libc6:armhf (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
1038s Setting up libc6:armhf (2.39-0ubuntu6) ...
1039s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58620 files and directories currently installed.)
1039s Preparing to unpack .../base-files_13ubuntu8_armhf.deb ...
1039s Unpacking base-files (13ubuntu8) over (13ubuntu7) ...
1039s Setting up base-files (13ubuntu8) ...
1041s motd-news.service is a disabled or a static unit not running, not starting it.
1041s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58620 files and directories currently installed.)
1041s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ...
1041s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ...
1041s Setting up bsdutils (1:2.39.3-9ubuntu2) ...
1041s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58620 files and directories currently installed.)
1041s Preparing to unpack .../openssl_3.0.13-0ubuntu2_armhf.deb ...
1041s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
1041s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ...
1041s Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ...
1041s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ...
1041s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58620 files and directories currently installed.)
1041s Preparing to unpack .../0-librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ...
1041s Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ...
1041s Preparing to unpack .../1-python3.12_3.12.2-4build3_armhf.deb ...
1042s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ...
1042s Preparing to unpack .../2-libexpat1_2.6.1-2_armhf.deb ...
1042s Unpacking libexpat1:armhf (2.6.1-2) over (2.6.0-1) ...
1042s Preparing to unpack .../3-python3.12-minimal_3.12.2-4build3_armhf.deb ...
1042s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ...
1042s Preparing to unpack .../4-libpython3.12-stdlib_3.12.2-4build3_armhf.deb ...
1042s Unpacking libpython3.12-stdlib:armhf (3.12.2-4build3) over (3.12.2-1) ...
1042s Preparing to unpack .../5-libpython3.12-minimal_3.12.2-4build3_armhf.deb ...
1042s Unpacking libpython3.12-minimal:armhf (3.12.2-4build3) over (3.12.2-1) ...
1043s Preparing to unpack .../6-parted_3.6-3.1build2_armhf.deb ...
1043s Unpacking parted (3.6-3.1build2) over (3.6-3) ...
1043s (Reading database ... 
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(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58618 files and directories currently installed.)
1043s Removing libparted2:armhf (3.6-3) ...
1043s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58612 files and directories currently installed.)
1043s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_armhf.deb ...
1043s Unpacking libblkid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1043s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ...
1043s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58612 files and directories currently installed.)
1043s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ...
1043s Unpacking libselinux1:armhf (3.5-2ubuntu1) over (3.5-2build1) ...
1043s Setting up libselinux1:armhf (3.5-2ubuntu1) ...
1043s (Reading database ... 
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(Reading database ... 70%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58612 files and directories currently installed.)
1043s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ...
1043s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1043s Preparing to unpack .../systemd-timesyncd_255.4-1ubuntu5_armhf.deb ...
1043s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1043s Preparing to unpack .../dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ...
1043s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1043s Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ...
1043s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ...
1044s Setting up libaudit-common (1:3.1.2-2.1) ...
1044s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58612 files and directories currently installed.)
1044s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ...
1044s Unpacking libcap-ng0:armhf (0.8.4-2build1) over (0.8.4-2) ...
1044s Setting up libcap-ng0:armhf (0.8.4-2build1) ...
1044s (Reading database ... 
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1044s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_armhf.deb ...
1044s Unpacking libaudit1:armhf (1:3.1.2-2.1) over (1:3.1.2-2) ...
1044s Setting up libaudit1:armhf (1:3.1.2-2.1) ...
1044s (Reading database ... 
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1044s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ...
1044s Unpacking libpam0g:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
1044s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ...
1044s (Reading database ... 
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1044s Preparing to unpack .../liblzma5_5.6.0-0.2_armhf.deb ...
1044s Unpacking liblzma5:armhf (5.6.0-0.2) over (5.4.5-0.3) ...
1044s Setting up liblzma5:armhf (5.6.0-0.2) ...
1045s (Reading database ... 
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1045s Preparing to unpack .../0-libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ...
1045s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
1045s Preparing to unpack .../1-libudisks2-0_2.10.1-6_armhf.deb ...
1045s Unpacking libudisks2-0:armhf (2.10.1-6) over (2.10.1-1ubuntu2) ...
1045s Preparing to unpack .../2-udisks2_2.10.1-6_armhf.deb ...
1045s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ...
1045s Preparing to unpack .../3-shared-mime-info_2.4-1build1_armhf.deb ...
1045s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ...
1045s Preparing to unpack .../4-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ...
1045s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
1045s Preparing to unpack .../5-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ...
1045s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
1045s Preparing to unpack .../6-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ...
1045s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
1045s Preparing to unpack .../7-python3-gi_3.47.0-3build1_armhf.deb ...
1046s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ...
1046s Preparing to unpack .../8-python3-dbus_1.3.2-5build2_armhf.deb ...
1046s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ...
1046s dpkg: libgpgme11:armhf: dependency problems, but removing anyway as you requested:
1046s  libvolume-key1:armhf depends on libgpgme11 (>= 1.4.1).
1046s  libjcat1:armhf depends on libgpgme11 (>= 1.2.0).
1046s 
1046s (Reading database ... 
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1046s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ...
1046s Selecting previously unselected package libgpgme11t64:armhf.
1046s (Reading database ... 
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1046s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ...
1046s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
1046s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_armhf.deb ...
1046s Unpacking libvolume-key1:armhf (0.3.12-7build1) over (0.3.12-5build2) ...
1046s Selecting previously unselected package libnetplan1:armhf.
1046s Preparing to unpack .../02-libnetplan1_1.0-1_armhf.deb ...
1046s Unpacking libnetplan1:armhf (1.0-1) ...
1046s Preparing to unpack .../03-python3-netplan_1.0-1_armhf.deb ...
1046s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ...
1046s Preparing to unpack .../04-netplan-generator_1.0-1_armhf.deb ...
1046s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
1046s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ...
1047s Preparing to unpack .../05-initramfs-tools-bin_0.142ubuntu23_armhf.deb ...
1047s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ...
1047s Preparing to unpack .../06-initramfs-tools-core_0.142ubuntu23_all.deb ...
1047s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ...
1047s Preparing to unpack .../07-ubuntu-minimal_1.536build1_armhf.deb ...
1047s Unpacking ubuntu-minimal (1.536build1) over (1.536) ...
1047s Preparing to unpack .../08-initramfs-tools_0.142ubuntu23_all.deb ...
1047s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ...
1047s Preparing to unpack .../09-netplan.io_1.0-1_armhf.deb ...
1047s Unpacking netplan.io (1.0-1) over (0.107.1-3) ...
1047s Preparing to unpack .../10-libxmlb2_0.3.15-1build1_armhf.deb ...
1047s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ...
1047s Preparing to unpack .../11-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ...
1047s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ...
1047s Preparing to unpack .../12-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ...
1047s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ...
1047s Preparing to unpack .../13-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ...
1047s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ...
1047s Preparing to unpack .../14-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ...
1047s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ...
1047s Preparing to unpack .../15-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ...
1047s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ...
1048s (Reading database ... 
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1048s Removing libnetplan0:armhf (0.107.1-3) ...
1048s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested:
1048s  libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0).
1048s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
1048s  libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56).
1048s  libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3).
1048s  libjcat1:armhf depends on libglib2.0-0 (>= 2.75.3).
1048s  libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3).
1048s  libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0).
1048s  libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0).
1048s  libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-utils3:armhf depends on libglib2.0-0 (>= 2.75.3).
1048s  libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2).
1048s  fwupd depends on libglib2.0-0 (>= 2.79.0).
1048s  bolt depends on libglib2.0-0 (>= 2.56.0).
1048s 
1048s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ...
1048s Selecting previously unselected package libglib2.0-0t64:armhf.
1048s (Reading database ... 
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1048s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ...
1048s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
1048s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm'
1048s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
1048s Preparing to unpack .../libjcat1_0.2.0-2build2_armhf.deb ...
1048s Unpacking libjcat1:armhf (0.2.0-2build2) over (0.2.0-2) ...
1048s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested:
1048s  fwupd depends on libarchive13 (>= 3.2.1).
1048s 
1048s (Reading database ... 
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1048s Removing libarchive13:armhf (3.7.2-1ubuntu2) ...
1048s Selecting previously unselected package libarchive13t64:armhf.
1048s (Reading database ... 
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1048s Preparing to unpack .../00-libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ...
1048s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
1048s Preparing to unpack .../01-fwupd_1.9.15-2_armhf.deb ...
1049s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ...
1049s Preparing to unpack .../02-ubuntu-pro-client-l10n_31.2.2_armhf.deb ...
1049s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ...
1049s Preparing to unpack .../03-ubuntu-pro-client_31.2.2_armhf.deb ...
1049s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ...
1049s Preparing to unpack .../04-python3.11_3.11.8-1build4_armhf.deb ...
1049s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ...
1050s Preparing to unpack .../05-python3.11-minimal_3.11.8-1build4_armhf.deb ...
1050s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ...
1050s Preparing to unpack .../06-libpython3.11-minimal_3.11.8-1build4_armhf.deb ...
1050s Unpacking libpython3.11-minimal:armhf (3.11.8-1build4) over (3.11.8-1) ...
1050s Preparing to unpack .../07-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
1050s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
1050s Preparing to unpack .../08-libtext-iconv-perl_1.7-8build2_armhf.deb ...
1050s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ...
1050s Preparing to unpack .../09-libtext-charwidth-perl_0.04-11build2_armhf.deb ...
1050s Unpacking libtext-charwidth-perl:armhf (0.04-11build2) over (0.04-11build1) ...
1050s Preparing to unpack .../10-perl-base_5.38.2-3.2_armhf.deb ...
1050s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ...
1051s Setting up perl-base (5.38.2-3.2) ...
1051s (Reading database ... 
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1051s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_armhf.deb ...
1051s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ...
1051s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ...
1051s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
1052s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_armhf.deb ...
1052s Unpacking python3-gdbm:armhf (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
1052s Preparing to unpack .../man-db_2.12.0-3build4_armhf.deb ...
1052s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ...
1052s dpkg: libgdbm-compat4:armhf: dependency problems, but removing anyway as you requested:
1052s  libperl5.38:armhf depends on libgdbm-compat4 (>= 1.18-3).
1052s 
1052s (Reading database ... 
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1052s Removing libgdbm-compat4:armhf (1.23-5) ...
1052s dpkg: libgdbm6:armhf: dependency problems, but removing anyway as you requested:
1052s  libperl5.38:armhf depends on libgdbm6 (>= 1.21).
1052s 
1052s Removing libgdbm6:armhf (1.23-5) ...
1052s Selecting previously unselected package libgdbm6t64:armhf.
1052s (Reading database ... 
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1052s Preparing to unpack .../libgdbm6t64_1.23-5.1_armhf.deb ...
1052s Unpacking libgdbm6t64:armhf (1.23-5.1) ...
1052s Selecting previously unselected package libgdbm-compat4t64:armhf.
1052s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ...
1052s Unpacking libgdbm-compat4t64:armhf (1.23-5.1) ...
1053s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested:
1053s  perl depends on libperl5.38 (= 5.38.2-3).
1053s 
1053s (Reading database ... 
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1053s Removing libperl5.38:armhf (5.38.2-3) ...
1053s Selecting previously unselected package libperl5.38t64:armhf.
1053s (Reading database ... 
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1053s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ...
1053s Unpacking libperl5.38t64:armhf (5.38.2-3.2) ...
1053s Preparing to unpack .../perl_5.38.2-3.2_armhf.deb ...
1053s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ...
1053s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested:
1053s  libpython3.11-stdlib:armhf depends on libdb5.3.
1053s  libpam-modules:armhf depends on libdb5.3.
1053s  iproute2 depends on libdb5.3.
1053s  apt-utils depends on libdb5.3.
1053s 
1053s (Reading database ... 
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1053s Removing libdb5.3:armhf (5.3.28+dfsg2-4) ...
1053s Selecting previously unselected package libdb5.3t64:armhf.
1054s (Reading database ... 
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1054s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ...
1054s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
1054s Preparing to unpack .../libpython3.11-stdlib_3.11.8-1build4_armhf.deb ...
1054s Unpacking libpython3.11-stdlib:armhf (3.11.8-1build4) over (3.11.8-1) ...
1054s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ...
1054s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1054s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested:
1054s  gpgv depends on libnpth0 (>= 0.90).
1054s  gpgsm depends on libnpth0 (>= 0.90).
1054s  gpg-agent depends on libnpth0 (>= 0.90).
1054s  gpg depends on libnpth0 (>= 0.90).
1054s  dirmngr depends on libnpth0 (>= 0.90).
1054s 
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1054s Removing libnpth0:armhf (1.6-3build2) ...
1054s Selecting previously unselected package libnpth0t64:armhf.
1054s (Reading database ... 
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1054s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ...
1054s Unpacking libnpth0t64:armhf (1.6-3.1) ...
1054s Setting up libnpth0t64:armhf (1.6-3.1) ...
1054s (Reading database ... 
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1054s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ...
1054s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1054s Setting up gpgv (2.4.4-2ubuntu15) ...
1055s (Reading database ... 
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1055s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ...
1055s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1055s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ...
1055s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1055s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ...
1055s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1055s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ...
1055s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1055s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ...
1055s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1055s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested:
1055s  gpgconf depends on libreadline8 (>= 6.0).
1055s  gawk depends on libreadline8 (>= 6.0).
1055s  fdisk depends on libreadline8 (>= 6.0).
1055s 
1055s (Reading database ... 
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1055s Removing libreadline8:armhf (8.2-3) ...
1055s Selecting previously unselected package libreadline8t64:armhf.
1055s (Reading database ... 
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1055s Preparing to unpack .../libreadline8t64_8.2-4_armhf.deb ...
1055s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
1055s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
1055s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
1055s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
1055s Unpacking libreadline8t64:armhf (8.2-4) ...
1055s Setting up libreadline8t64:armhf (8.2-4) ...
1055s (Reading database ... 
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1055s Preparing to unpack .../0-gawk_1%3a5.2.1-2build2_armhf.deb ...
1055s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ...
1055s Preparing to unpack .../1-fdisk_2.39.3-9ubuntu2_armhf.deb ...
1055s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1055s Preparing to unpack .../2-gpgconf_2.4.4-2ubuntu15_armhf.deb ...
1055s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1056s Preparing to unpack .../3-dirmngr_2.4.4-2ubuntu15_armhf.deb ...
1056s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1056s Preparing to unpack .../4-gnupg_2.4.4-2ubuntu15_all.deb ...
1056s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1056s Preparing to unpack .../5-python3-apt_2.7.7_armhf.deb ...
1056s Unpacking python3-apt (2.7.7) over (2.7.6) ...
1056s Preparing to unpack .../6-apt-utils_2.7.14_armhf.deb ...
1056s Unpacking apt-utils (2.7.14) over (2.7.12) ...
1056s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested:
1056s  apt depends on libapt-pkg6.0 (>= 2.7.12).
1056s 
1056s (Reading database ... 
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1056s Removing libapt-pkg6.0:armhf (2.7.12) ...
1056s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested:
1056s  libhogweed6:armhf depends on libnettle8.
1056s  libgnutls30:armhf depends on libnettle8 (>= 3.9~).
1056s  libcurl3-gnutls:armhf depends on libnettle8.
1056s 
1056s Removing libnettle8:armhf (3.9.1-2) ...
1056s Selecting previously unselected package libapt-pkg6.0t64:armhf.
1056s (Reading database ... 
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1056s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ...
1056s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ...
1056s Setting up libapt-pkg6.0t64:armhf (2.7.14) ...
1056s Selecting previously unselected package libnettle8t64:armhf.
1057s (Reading database ... 
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1057s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ...
1057s Unpacking libnettle8t64:armhf (3.9.1-2.2) ...
1057s Setting up libnettle8t64:armhf (3.9.1-2.2) ...
1057s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested:
1057s  libgnutls30:armhf depends on libhogweed6 (>= 3.6).
1057s 
1057s (Reading database ... 
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1057s Removing libhogweed6:armhf (3.9.1-2) ...
1057s Selecting previously unselected package libhogweed6t64:armhf.
1057s (Reading database ... 
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1057s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ...
1057s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ...
1057s Setting up libhogweed6t64:armhf (3.9.1-2.2) ...
1057s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested:
1057s  libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2).
1057s  apt depends on libgnutls30 (>= 3.8.1).
1057s 
1057s (Reading database ... 
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1057s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ...
1057s Selecting previously unselected package libgnutls30t64:armhf.
1057s (Reading database ... 
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1057s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ...
1057s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
1057s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
1057s (Reading database ... 
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1057s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ...
1057s Unpacking apt (2.7.14) over (2.7.12) ...
1058s Setting up apt (2.7.14) ...
1059s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested:
1059s  libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0).
1059s 
1059s (Reading database ... 
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1059s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ...
1059s Selecting previously unselected package libcurl3t64-gnutls:armhf.
1059s (Reading database ... 
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1059s Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu8_armhf.deb ...
1059s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ...
1059s Preparing to unpack .../libfwupd2_1.9.15-2_armhf.deb ...
1059s Unpacking libfwupd2:armhf (1.9.15-2) over (1.9.14-1) ...
1059s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested:
1059s  wget depends on libpsl5 (>= 0.16.0).
1059s  libcurl4:armhf depends on libpsl5 (>= 0.16.0).
1059s 
1059s (Reading database ... 
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1059s Removing libpsl5:armhf (0.21.2-1build1) ...
1059s Selecting previously unselected package libpsl5t64:armhf.
1059s (Reading database ... 
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1059s Preparing to unpack .../libpsl5t64_0.21.2-1.1_armhf.deb ...
1059s Unpacking libpsl5t64:armhf (0.21.2-1.1) ...
1059s Preparing to unpack .../wget_1.21.4-1ubuntu2_armhf.deb ...
1059s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ...
1059s Preparing to unpack .../tnftp_20230507-2build1_armhf.deb ...
1059s Unpacking tnftp (20230507-2build1) over (20230507-2) ...
1059s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested:
1059s  tcpdump depends on libpcap0.8 (>= 1.9.1).
1059s 
1060s (Reading database ... 
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(Reading database ... 58644 files and directories currently installed.)
1060s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ...
1060s Selecting previously unselected package libpcap0.8t64:armhf.
1060s (Reading database ... 
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1060s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu2_armhf.deb ...
1060s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ...
1060s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ...
1060s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ...
1060s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ...
1060s Unpacking libsystemd-shared:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1060s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ...
1060s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1060s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ...
1060s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ...
1060s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ...
1060s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ...
1060s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ...
1060s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ...
1061s Preparing to unpack .../07-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
1061s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
1061s Preparing to unpack .../08-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ...
1061s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
1061s Preparing to unpack .../09-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
1061s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
1061s Selecting previously unselected package linux-headers-6.8.0-20.
1061s Preparing to unpack .../10-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ...
1061s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ...
1068s Selecting previously unselected package linux-headers-6.8.0-20-generic.
1068s Preparing to unpack .../11-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ...
1068s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
1071s Preparing to unpack .../12-linux-headers-generic_6.8.0-20.20+1_armhf.deb ...
1071s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
1071s (Reading database ... 
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1071s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ...
1073s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested:
1073s  systemd depends on libssl3 (>= 3.0.0).
1073s  libssh-4:armhf depends on libssl3 (>= 3.0.0).
1073s  libsasl2-modules:armhf depends on libssl3 (>= 3.0.0).
1073s  libsasl2-2:armhf depends on libssl3 (>= 3.0.0).
1073s  libnvme1 depends on libssl3 (>= 3.0.0).
1073s  libkrb5-3:armhf depends on libssl3 (>= 3.0.0).
1073s  libkmod2:armhf depends on libssl3 (>= 3.0.0).
1073s  libfido2-1:armhf depends on libssl3 (>= 3.0.0).
1073s  libcurl4:armhf depends on libssl3 (>= 3.0.0).
1073s  libcryptsetup12:armhf depends on libssl3 (>= 3.0.0).
1073s  kmod depends on libssl3 (>= 3.0.0).
1073s  dhcpcd-base depends on libssl3 (>= 3.0.0).
1073s  bind9-libs:armhf depends on libssl3 (>= 3.0.0).
1073s 
1073s Removing libssl3:armhf (3.0.10-1ubuntu4) ...
1073s Selecting previously unselected package libssl3t64:armhf.
1073s (Reading database ... 
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1073s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ...
1073s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ...
1073s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ...
1073s (Reading database ... 
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1073s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ...
1073s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1073s Setting up libudev1:armhf (255.4-1ubuntu5) ...
1073s (Reading database ... 
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1073s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ...
1073s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1074s Preparing to unpack .../udev_255.4-1ubuntu5_armhf.deb ...
1074s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1074s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ...
1074s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1074s Setting up libsystemd0:armhf (255.4-1ubuntu5) ...
1074s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ...
1074s Setting up systemd-dev (255.4-1ubuntu5) ...
1074s Setting up systemd (255.4-1ubuntu5) ...
1075s (Reading database ... 
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1075s Preparing to unpack .../systemd-sysv_255.4-1ubuntu5_armhf.deb ...
1075s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1075s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ...
1075s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1076s Preparing to unpack .../libpam-systemd_255.4-1ubuntu5_armhf.deb ...
1076s Unpacking libpam-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
1076s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_armhf.deb ...
1076s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
1076s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ...
1076s pam_namespace.service is a disabled or a static unit not running, not starting it.
1076s (Reading database ... 
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1076s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_armhf.deb ...
1077s Unpacking libpam-modules:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
1077s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ...
1077s Installing new version of config file /etc/security/namespace.init ...
1077s (Reading database ... 
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1077s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ...
1077s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
1077s Setting up libpam-runtime (1.5.3-5ubuntu3) ...
1077s (Reading database ... 
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1077s Preparing to unpack .../0-dbus-user-session_1.14.10-4ubuntu2_armhf.deb ...
1077s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1077s Preparing to unpack .../1-libapparmor1_4.0.0-beta3-0ubuntu2_armhf.deb ...
1077s Unpacking libapparmor1:armhf (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
1077s Preparing to unpack .../2-dbus-bin_1.14.10-4ubuntu2_armhf.deb ...
1077s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1078s Preparing to unpack .../3-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ...
1078s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1078s Preparing to unpack .../4-dbus_1.14.10-4ubuntu2_armhf.deb ...
1078s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1078s Preparing to unpack .../5-dbus-daemon_1.14.10-4ubuntu2_armhf.deb ...
1078s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1078s Preparing to unpack .../6-libdbus-1-3_1.14.10-4ubuntu2_armhf.deb ...
1078s Unpacking libdbus-1-3:armhf (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
1078s Preparing to unpack .../7-kmod_31+20240202-2ubuntu4_armhf.deb ...
1078s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ...
1078s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty
1078s Preparing to unpack .../8-libkmod2_31+20240202-2ubuntu4_armhf.deb ...
1078s Unpacking libkmod2:armhf (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ...
1078s Preparing to unpack .../9-libmount1_2.39.3-9ubuntu2_armhf.deb ...
1078s Unpacking libmount1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1078s Setting up libmount1:armhf (2.39.3-9ubuntu2) ...
1078s (Reading database ... 
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1078s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_armhf.deb ...
1078s Unpacking libseccomp2:armhf (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ...
1078s Setting up libseccomp2:armhf (2.5.5-1ubuntu2) ...
1078s (Reading database ... 
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1078s Preparing to unpack .../libuuid1_2.39.3-9ubuntu2_armhf.deb ...
1078s Unpacking libuuid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1078s Setting up libuuid1:armhf (2.39.3-9ubuntu2) ...
1078s (Reading database ... 
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1078s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ...
1078s Unpacking libcryptsetup12:armhf (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
1079s Preparing to unpack .../1-libfdisk1_2.39.3-9ubuntu2_armhf.deb ...
1079s Unpacking libfdisk1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1079s Preparing to unpack .../2-mount_2.39.3-9ubuntu2_armhf.deb ...
1079s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1079s Preparing to unpack .../3-libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_armhf.deb ...
1079s Unpacking libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
1079s Selecting previously unselected package libparted2t64:armhf.
1079s Preparing to unpack .../4-libparted2t64_3.6-3.1build2_armhf.deb ...
1079s Unpacking libparted2t64:armhf (3.6-3.1build2) ...
1079s Preparing to unpack .../5-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ...
1079s Unpacking libsqlite3-0:armhf (3.45.1-1ubuntu1) over (3.45.1-1) ...
1079s Preparing to unpack .../6-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ...
1079s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ...
1079s Preparing to unpack .../7-libsmartcols1_2.39.3-9ubuntu2_armhf.deb ...
1079s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1079s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ...
1079s (Reading database ... 
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1079s Preparing to unpack .../0-readline-common_8.2-4_all.deb ...
1079s Unpacking readline-common (8.2-4) over (8.2-3) ...
1079s Preparing to unpack .../1-python3-yaml_6.0.1-2build1_armhf.deb ...
1079s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ...
1079s Preparing to unpack .../2-python-apt-common_2.7.7_all.deb ...
1079s Unpacking python-apt-common (2.7.7) over (2.7.6) ...
1080s Preparing to unpack .../3-python3-setuptools_68.1.2-2ubuntu1_all.deb ...
1080s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ...
1080s Preparing to unpack .../4-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ...
1080s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ...
1080s Preparing to unpack .../5-dpkg_1.22.6ubuntu4_armhf.deb ...
1080s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
1080s Setting up dpkg (1.22.6ubuntu4) ...
1081s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ...
1081s Setting up libexpat1:armhf (2.6.1-2) ...
1081s Setting up python3.12-minimal (3.12.2-4build3) ...
1083s (Reading database ... 
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1083s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ...
1083s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
1083s Setting up python3-minimal (3.12.2-0ubuntu1) ...
1084s (Reading database ... 
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1084s Preparing to unpack .../00-python3_3.12.2-0ubuntu1_armhf.deb ...
1084s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
1084s Preparing to unpack .../01-libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ...
1084s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
1084s Preparing to unpack .../02-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ...
1084s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1084s Preparing to unpack .../03-groff-base_1.23.0-3build1_armhf.deb ...
1084s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ...
1084s Preparing to unpack .../04-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
1084s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
1084s Preparing to unpack .../05-libblockdev-utils3_3.1.0-1build1_armhf.deb ...
1084s Unpacking libblockdev-utils3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1085s Preparing to unpack .../06-libblockdev-crypto3_3.1.0-1build1_armhf.deb ...
1085s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1085s Preparing to unpack .../07-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
1085s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
1085s Preparing to unpack .../08-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ...
1085s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ...
1085s Preparing to unpack .../09-eject_2.39.3-9ubuntu2_armhf.deb ...
1085s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1085s Preparing to unpack .../10-libbpf1_1%3a1.3.0-2build1_armhf.deb ...
1085s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ...
1085s Preparing to unpack .../11-iproute2_6.1.0-1ubuntu5_armhf.deb ...
1085s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ...
1085s (Reading database ... 
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1085s Removing libelf1:armhf (0.190-1) ...
1085s Selecting previously unselected package libelf1t64:armhf.
1085s (Reading database ... 
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1085s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ...
1085s Unpacking libelf1t64:armhf (0.190-1.1build2) ...
1085s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
1085s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
1085s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ...
1085s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ...
1086s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ...
1086s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ...
1086s (Reading database ... 
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1086s Removing libtirpc3:armhf (1.3.4+ds-1build1) ...
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1086s Preparing to unpack .../0-libgssapi-krb5-2_1.20.1-6ubuntu1_armhf.deb ...
1086s Unpacking libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
1086s Preparing to unpack .../1-libkrb5-3_1.20.1-6ubuntu1_armhf.deb ...
1086s Unpacking libkrb5-3:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
1086s Preparing to unpack .../2-libkrb5support0_1.20.1-6ubuntu1_armhf.deb ...
1086s Unpacking libkrb5support0:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
1086s Preparing to unpack .../3-libk5crypto3_1.20.1-6ubuntu1_armhf.deb ...
1086s Unpacking libk5crypto3:armhf (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
1086s Preparing to unpack .../4-libcom-err2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
1086s Unpacking libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
1086s Selecting previously unselected package libtirpc3t64:armhf.
1086s Preparing to unpack .../5-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ...
1086s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64'
1086s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
1086s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ...
1086s Preparing to unpack .../6-libc-bin_2.39-0ubuntu6_armhf.deb ...
1086s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
1086s Setting up libc-bin (2.39-0ubuntu6) ...
1087s (Reading database ... 
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1087s Preparing to unpack .../0-locales_2.39-0ubuntu6_all.deb ...
1087s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
1087s Preparing to unpack .../1-libproc2-0_2%3a4.0.4-4ubuntu2_armhf.deb ...
1087s Unpacking libproc2-0:armhf (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ...
1087s Preparing to unpack .../2-procps_2%3a4.0.4-4ubuntu2_armhf.deb ...
1087s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ...
1087s Preparing to unpack .../3-vim-tiny_2%3a9.1.0016-1ubuntu6_armhf.deb ...
1087s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ...
1088s Preparing to unpack .../4-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ...
1088s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ...
1088s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ...
1088s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
1088s Preparing to unpack .../6-libblockdev-fs3_3.1.0-1build1_armhf.deb ...
1088s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1088s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested:
1088s  btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27).
1088s 
1088s (Reading database ... 
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1088s Removing libreiserfscore0 (1:3.6.27-7) ...
1088s Selecting previously unselected package libreiserfscore0t64.
1088s (Reading database ... 
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1088s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ...
1088s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ...
1088s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ...
1088s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ...
1088s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested:
1088s  e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1).
1088s 
1088s (Reading database ... 
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1088s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ...
1088s Selecting previously unselected package libext2fs2t64:armhf.
1088s (Reading database ... 
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1088s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
1088s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64'
1088s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
1088s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64'
1088s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
1088s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
1089s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ...
1089s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
1089s (Reading database ... 
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1089s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
1089s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
1089s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ...
1089s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1089s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ...
1089s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1089s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ...
1089s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1089s (Reading database ... 
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1089s Removing libnvme1 (1.8-2) ...
1089s Selecting previously unselected package libnvme1t64.
1089s (Reading database ... 
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1089s Preparing to unpack .../00-libnvme1t64_1.8-3_armhf.deb ...
1089s Unpacking libnvme1t64 (1.8-3) ...
1089s Preparing to unpack .../01-libblockdev-part3_3.1.0-1build1_armhf.deb ...
1089s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1089s Preparing to unpack .../02-libblockdev-swap3_3.1.0-1build1_armhf.deb ...
1089s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1089s Preparing to unpack .../03-libblockdev3_3.1.0-1build1_armhf.deb ...
1089s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ...
1089s Preparing to unpack .../04-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ...
1089s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ...
1089s Preparing to unpack .../05-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ...
1089s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ...
1090s Preparing to unpack .../06-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ...
1090s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ...
1090s Preparing to unpack .../07-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ...
1090s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ...
1090s Preparing to unpack .../08-libjson-glib-1.0-common_1.8.0-2build1_all.deb ...
1090s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ...
1090s Preparing to unpack .../09-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ...
1090s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ...
1090s Preparing to unpack .../10-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ...
1090s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ...
1090s Preparing to unpack .../11-libgusb2_0.4.8-1build1_armhf.deb ...
1090s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ...
1090s Preparing to unpack .../12-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ...
1090s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ...
1090s Preparing to unpack .../13-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ...
1090s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ...
1090s Preparing to unpack .../14-libbrotli1_1.1.0-2build1_armhf.deb ...
1090s Unpacking libbrotli1:armhf (1.1.0-2build1) over (1.1.0-2) ...
1090s Preparing to unpack .../15-libnghttp2-14_1.59.0-1build1_armhf.deb ...
1090s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ...
1090s Preparing to unpack .../16-libssh-4_0.10.6-2build1_armhf.deb ...
1090s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ...
1090s Preparing to unpack .../17-libibverbs1_50.0-2build1_armhf.deb ...
1090s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ...
1090s Preparing to unpack .../18-libfido2-1_1.14.0-1build1_armhf.deb ...
1090s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ...
1090s Preparing to unpack .../19-coreutils_9.4-3ubuntu3_armhf.deb ...
1090s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ...
1091s Setting up coreutils (9.4-3ubuntu3) ...
1091s (Reading database ... 
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1091s Preparing to unpack .../debianutils_5.17_armhf.deb ...
1091s Unpacking debianutils (5.17) over (5.16) ...
1091s Setting up debianutils (5.17) ...
1091s (Reading database ... 
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1091s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ...
1091s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1091s Setting up util-linux (2.39.3-9ubuntu2) ...
1093s fstrim.service is a disabled or a static unit not running, not starting it.
1093s (Reading database ... 
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1093s Removing libatm1:armhf (1:2.5.1-5) ...
1093s (Reading database ... 
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1093s Preparing to unpack .../curl_8.5.0-2ubuntu8_armhf.deb ...
1093s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ...
1093s (Reading database ... 
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1093s Removing libcurl4:armhf (8.5.0-2ubuntu2) ...
1093s Selecting previously unselected package libcurl4t64:armhf.
1093s (Reading database ... 
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1093s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_armhf.deb ...
1093s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu8) ...
1093s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ...
1093s Unpacking file (1:5.45-3) over (1:5.45-2) ...
1093s (Reading database ... 
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1093s Removing libmagic1:armhf (1:5.45-2) ...
1094s (Reading database ... 
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1094s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ...
1094s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ...
1094s Selecting previously unselected package libmagic1t64:armhf.
1094s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ...
1094s Unpacking libmagic1t64:armhf (1:5.45-3) ...
1094s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ...
1094s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
1094s (Reading database ... 
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1094s Removing libpng16-16:armhf (1.6.43-1) ...
1094s Selecting previously unselected package libpng16-16t64:armhf.
1094s (Reading database ... 
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1094s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ...
1094s Unpacking libpng16-16t64:armhf (1.6.43-3) ...
1094s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ...
1094s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
1094s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ...
1094s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
1094s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ...
1094s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
1094s (Reading database ... 
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(Reading database ... 78677 files and directories currently installed.)
1094s Removing libuv1:armhf (1.48.0-1) ...
1094s Selecting previously unselected package libuv1t64:armhf.
1095s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78672 files and directories currently installed.)
1095s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ...
1095s Unpacking libuv1t64:armhf (1.48.0-1.1) ...
1095s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ...
1095s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
1095s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ...
1095s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ...
1095s Setting up libdebconfclient0:armhf (0.271ubuntu2) ...
1095s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78678 files and directories currently installed.)
1095s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ...
1095s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ...
1095s Setting up libsemanage-common (3.5-1build4) ...
1095s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78678 files and directories currently installed.)
1095s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ...
1095s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ...
1095s Setting up libsemanage2:armhf (3.5-1build4) ...
1095s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 78678 files and directories currently installed.)
1095s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ...
1095s Unpacking install-info (7.1-3build1) over (7.1-3) ...
1095s Setting up install-info (7.1-3build1) ...
1096s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 78678 files and directories currently installed.)
1096s Preparing to unpack .../00-gcc-13-base_13.2.0-21ubuntu1_armhf.deb ...
1096s Unpacking gcc-13-base:armhf (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ...
1096s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
1096s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
1096s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ...
1096s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
1096s Preparing to unpack .../03-krb5-locales_1.20.1-6ubuntu1_all.deb ...
1096s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ...
1096s Preparing to unpack .../04-libbsd0_0.12.1-1_armhf.deb ...
1096s Unpacking libbsd0:armhf (0.12.1-1) over (0.11.8-1) ...
1096s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
1096s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
1096s Preparing to unpack .../06-libslang2_2.3.3-3build1_armhf.deb ...
1096s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ...
1096s Preparing to unpack .../07-rsyslog_8.2312.0-3ubuntu7_armhf.deb ...
1096s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ...
1096s Selecting previously unselected package xdg-user-dirs.
1096s Preparing to unpack .../08-xdg-user-dirs_0.18-1_armhf.deb ...
1096s Unpacking xdg-user-dirs (0.18-1) ...
1096s Preparing to unpack .../09-xxd_2%3a9.1.0016-1ubuntu6_armhf.deb ...
1096s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ...
1096s Preparing to unpack .../10-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ...
1097s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
1098s Preparing to unpack .../11-ftp_20230507-2build1_all.deb ...
1098s Unpacking ftp (20230507-2build1) over (20230507-2) ...
1098s Preparing to unpack .../12-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ...
1098s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ...
1098s Preparing to unpack .../13-info_7.1-3build1_armhf.deb ...
1098s Unpacking info (7.1-3build1) over (7.1-3) ...
1098s Preparing to unpack .../14-libxmuu1_2%3a1.1.3-3build1_armhf.deb ...
1098s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ...
1098s Preparing to unpack .../15-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ...
1098s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ...
1099s Preparing to unpack .../16-mtr-tiny_0.95-1.1build1_armhf.deb ...
1099s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ...
1099s Preparing to unpack .../17-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ...
1099s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
1099s Preparing to unpack .../18-plymouth_24.004.60-1ubuntu6_armhf.deb ...
1099s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
1099s Preparing to unpack .../19-psmisc_23.7-1_armhf.deb ...
1099s Unpacking psmisc (23.7-1) over (23.6-2) ...
1099s Preparing to unpack .../20-telnet_0.17+2.5-3ubuntu3_all.deb ...
1099s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ...
1099s Preparing to unpack .../21-xz-utils_5.6.0-0.2_armhf.deb ...
1099s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ...
1099s Preparing to unpack .../22-ubuntu-standard_1.536build1_armhf.deb ...
1099s Unpacking ubuntu-standard (1.536build1) over (1.536) ...
1099s Preparing to unpack .../23-usb.ids_2024.03.18-1_all.deb ...
1099s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ...
1099s Preparing to unpack .../24-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ...
1099s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../25-libctf0_2.42-4ubuntu1_armhf.deb ...
1100s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../26-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ...
1100s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../27-libbinutils_2.42-4ubuntu1_armhf.deb ...
1100s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../28-binutils_2.42-4ubuntu1_armhf.deb ...
1100s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../29-binutils-common_2.42-4ubuntu1_armhf.deb ...
1100s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../30-libsframe1_2.42-4ubuntu1_armhf.deb ...
1100s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
1100s Preparing to unpack .../31-bolt_0.9.6-2build1_armhf.deb ...
1100s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ...
1100s Preparing to unpack .../32-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ...
1100s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
1100s Preparing to unpack .../33-dpkg-dev_1.22.6ubuntu4_all.deb ...
1100s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
1101s Preparing to unpack .../34-libdpkg-perl_1.22.6ubuntu4_all.deb ...
1101s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
1101s Preparing to unpack .../35-fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
1101s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
1101s Preparing to unpack .../36-gnupg-l10n_2.4.4-2ubuntu15_all.deb ...
1101s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
1101s Preparing to unpack .../37-ibverbs-providers_50.0-2build1_armhf.deb ...
1101s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ...
1101s Preparing to unpack .../38-jq_1.7.1-3_armhf.deb ...
1101s Unpacking jq (1.7.1-3) over (1.7.1-2) ...
1101s Preparing to unpack .../39-libjq1_1.7.1-3_armhf.deb ...
1101s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ...
1101s Selecting previously unselected package libatm1t64:armhf.
1101s Preparing to unpack .../40-libatm1t64_1%3a2.5.1-5.1_armhf.deb ...
1101s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ...
1101s Preparing to unpack .../41-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ...
1101s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ...
1101s Preparing to unpack .../42-libftdi1-2_1.5-6build4_armhf.deb ...
1101s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ...
1101s Preparing to unpack .../43-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ...
1101s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
1101s Preparing to unpack .../44-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
1101s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
1102s Preparing to unpack .../45-python3-distutils_3.12.2-3ubuntu1.1_all.deb ...
1102s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
1102s Preparing to unpack .../46-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ...
1102s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
1102s Preparing to unpack .../47-python3-markupsafe_2.1.5-1build1_armhf.deb ...
1102s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
1102s Preparing to unpack .../48-python3-pyrsistent_0.20.0-1build1_armhf.deb ...
1102s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ...
1102s Preparing to unpack .../49-python3-typing-extensions_4.10.0-1_all.deb ...
1103s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ...
1103s Preparing to unpack .../50-cloud-init_24.1.2-0ubuntu1_all.deb ...
1103s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
1104s Preparing to unpack .../51-kpartx_0.9.4-5ubuntu6_armhf.deb ...
1104s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ...
1104s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
1104s Setting up pinentry-curses (1.2.1-3ubuntu4) ...
1104s Setting up motd-news-config (13ubuntu8) ...
1104s Setting up libtext-iconv-perl:armhf (1.7-8build2) ...
1104s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ...
1104s Setting up libibverbs1:armhf (50.0-2build1) ...
1104s Setting up systemd-sysv (255.4-1ubuntu5) ...
1104s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ...
1104s Setting up libatm1t64:armhf (1:2.5.1-5.1) ...
1104s Setting up libgdbm6t64:armhf (1.23-5.1) ...
1104s Setting up bsdextrautils (2.39.3-9ubuntu2) ...
1104s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ...
1104s Setting up xdg-user-dirs (0.18-1) ...
1104s Setting up ibverbs-providers:armhf (50.0-2build1) ...
1122s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ...
1122s Setting up libmagic-mgc (1:5.45-3) ...
1122s Setting up gawk (1:5.2.1-2build2) ...
1122s Setting up psmisc (23.7-1) ...
1122s Setting up libjq1:armhf (1.7.1-3) ...
1122s Setting up libtirpc-common (1.3.4+ds-1.1) ...
1122s Setting up libbrotli1:armhf (1.1.0-2build1) ...
1122s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ...
1122s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ...
1122s Setting up libuv1t64:armhf (1.48.0-1.1) ...
1122s Setting up libmagic1t64:armhf (1:5.45-3) ...
1122s Setting up rsyslog (8.2312.0-3ubuntu7) ...
1122s info: The user `syslog' is already a member of `adm'.
1123s apparmor_parser: Unable to replace "rsyslogd".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1123s 
1124s Setting up binutils-common:armhf (2.42-4ubuntu1) ...
1124s Setting up libpsl5t64:armhf (0.21.2-1.1) ...
1124s Setting up libnghttp2-14:armhf (1.59.0-1build1) ...
1124s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ...
1124s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ...
1124s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ...
1124s Setting up krb5-locales (1.20.1-6ubuntu1) ...
1124s Setting up file (1:5.45-3) ...
1124s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ...
1124s Setting up locales (2.39-0ubuntu6) ...
1125s Generating locales (this might take a while)...
1130s   en_US.UTF-8... done
1153s Generation complete.
1153s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ...
1153s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ...
1153s Setting up xxd (2:9.1.0016-1ubuntu6) ...
1153s Setting up libsframe1:armhf (2.42-4ubuntu1) ...
1153s Setting up libelf1t64:armhf (0.190-1.1build2) ...
1153s Setting up libkrb5support0:armhf (1.20.1-6ubuntu1) ...
1153s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
1153s Setting up eject (2.39.3-9ubuntu2) ...
1153s Setting up apparmor (4.0.0-beta3-0ubuntu2) ...
1153s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
1153s Installing new version of config file /etc/apparmor.d/abstractions/crypto ...
1153s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ...
1153s Installing new version of config file /etc/apparmor.d/abstractions/openssl ...
1153s Installing new version of config file /etc/apparmor.d/code ...
1153s Installing new version of config file /etc/apparmor.d/firefox ...
1154s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1154s 
1154s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1154s 
1154s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1154s 
1155s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory
1155s Reloading AppArmor profiles 
1155s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "busybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "nautilus".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "toybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1155s 
1155s Error: At least one profile failed to load
1155s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
1155s No schema files found: doing nothing.
1155s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
1155s Setting up vim-common (2:9.1.0016-1ubuntu6) ...
1155s Setting up gcc-13-base:armhf (13.2.0-21ubuntu1) ...
1155s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ...
1155s Setting up libslang2:armhf (2.3.3-3build1) ...
1155s Setting up libnvme1t64 (1.8-3) ...
1155s Setting up mtr-tiny (0.95-1.1build1) ...
1155s Setting up gnupg-l10n (2.4.4-2ubuntu15) ...
1155s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ...
1155s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ...
1155s Setting up xz-utils (5.6.0-0.2) ...
1155s Setting up perl-modules-5.38 (5.38.2-3.2) ...
1155s Setting up libproc2-0:armhf (2:4.0.4-4ubuntu2) ...
1155s Setting up libpng16-16t64:armhf (1.6.43-3) ...
1155s Setting up systemd-timesyncd (255.4-1ubuntu5) ...
1156s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ...
1156s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ...
1156s Setting up usb.ids (2024.03.18-1) ...
1156s Setting up sudo (1.9.15p5-3ubuntu3) ...
1156s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ...
1156s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ...
1156s Setting up libk5crypto3:armhf (1.20.1-6ubuntu1) ...
1156s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ...
1156s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ...
1156s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
1156s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ...
1156s Setting up python-apt-common (2.7.7) ...
1156s Setting up mount (2.39.3-9ubuntu2) ...
1156s Setting up dmsetup (2:1.02.185-3ubuntu2) ...
1156s Setting up uuid-runtime (2.39.3-9ubuntu2) ...
1158s uuidd.service is a disabled or a static unit not running, not starting it.
1158s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ...
1158s Setting up groff-base (1.23.0-3build1) ...
1158s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ...
1158s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ...
1158s Setting up jq (1.7.1-3) ...
1158s Setting up procps (2:4.0.4-4ubuntu2) ...
1159s Setting up gpgconf (2.4.4-2ubuntu15) ...
1159s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ...
1159s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ...
1159s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ...
1159s Setting up libjson-glib-1.0-common (1.8.0-2build1) ...
1159s Setting up libkrb5-3:armhf (1.20.1-6ubuntu1) ...
1159s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ...
1159s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ...
1159s Setting up libperl5.38t64:armhf (5.38.2-3.2) ...
1159s Setting up tnftp (20230507-2build1) ...
1159s Setting up libbinutils:armhf (2.42-4ubuntu1) ...
1159s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ...
1159s Setting up libfido2-1:armhf (1.14.0-1build1) ...
1159s Setting up openssl (3.0.13-0ubuntu2) ...
1159s Setting up libbsd0:armhf (0.12.1-1) ...
1159s Setting up readline-common (8.2-4) ...
1159s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ...
1159s Setting up libxmuu1:armhf (2:1.1.3-3build1) ...
1159s Setting up dbus-bin (1.14.10-4ubuntu2) ...
1159s Setting up info (7.1-3build1) ...
1159s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ...
1159s Setting up gpg (2.4.4-2ubuntu15) ...
1159s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ...
1159s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ...
1159s Setting up libbpf1:armhf (1:1.3.0-2build1) ...
1159s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ...
1159s Setting up rsync (3.2.7-1build1) ...
1160s rsync.service is a disabled or a static unit not running, not starting it.
1160s Setting up libudisks2-0:armhf (2.10.1-6) ...
1160s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ...
1160s Setting up bolt (0.9.6-2build1) ...
1161s bolt.service is a disabled or a static unit not running, not starting it.
1161s Setting up gnupg-utils (2.4.4-2ubuntu15) ...
1161s Setting up initramfs-tools-bin (0.142ubuntu23) ...
1161s Setting up libctf0:armhf (2.42-4ubuntu1) ...
1161s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ...
1161s Setting up python3.11-minimal (3.11.8-1build4) ...
1163s Setting up tcpdump (4.99.4-3ubuntu2) ...
1163s apparmor_parser: Unable to replace "tcpdump".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1163s 
1163s Setting up apt-utils (2.7.14) ...
1163s Setting up gpg-agent (2.4.4-2ubuntu15) ...
1164s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ...
1164s Setting up wget (1.21.4-1ubuntu2) ...
1164s Setting up libxmlb2:armhf (0.3.15-1build1) ...
1164s Setting up btrfs-progs (6.6.3-1.1build1) ...
1164s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ...
1164s Setting up python3.12 (3.12.2-4build3) ...
1167s Setting up gpgsm (2.4.4-2ubuntu15) ...
1167s Setting up inetutils-telnet (2:2.5-3ubuntu3) ...
1167s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ...
1167s update-initramfs: deferring update (trigger activated)
1168s e2scrub_all.service is a disabled or a static unit not running, not starting it.
1168s Setting up libparted2t64:armhf (3.6-3.1build2) ...
1168s Setting up linux-headers-generic (6.8.0-20.20+1) ...
1168s Setting up dbus-daemon (1.14.10-4ubuntu2) ...
1168s Setting up libmbim-proxy (1.31.2-0ubuntu2) ...
1168s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ...
1168s Setting up kmod (31+20240202-2ubuntu4) ...
1168s Setting up libnetplan1:armhf (1.0-1) ...
1168s Setting up man-db (2.12.0-3build4) ...
1169s Updating database of manual pages ...
1171s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1171s 
1172s man-db.service is a disabled or a static unit not running, not starting it.
1172s Setting up fdisk (2.39.3-9ubuntu2) ...
1172s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ...
1172s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ...
1172s Setting up libftdi1-2:armhf (1.5-6build4) ...
1172s Setting up perl (5.38.2-3.2) ...
1172s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ...
1172s Setting up dbus (1.14.10-4ubuntu2) ...
1172s A reboot is required to replace the running dbus-daemon.
1172s Please reboot the system when convenient.
1172s Setting up shared-mime-info (2.4-1build1) ...
1173s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ...
1173s Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) ...
1173s Setting up udev (255.4-1ubuntu5) ...
1175s Setting up ftp (20230507-2build1) ...
1175s Setting up keyboxd (2.4.4-2ubuntu15) ...
1175s Setting up libdpkg-perl (1.22.6ubuntu4) ...
1175s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ...
1175s Setting up libssh-4:armhf (0.10.6-2build1) ...
1175s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ...
1175s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ...
1175s Setting up kpartx (0.9.4-5ubuntu6) ...
1175s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ...
1175s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ...
1175s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
1175s Setting up netplan-generator (1.0-1) ...
1175s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
1175s Setting up initramfs-tools-core (0.142ubuntu23) ...
1175s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ...
1175s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
1175s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ...
1175s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ...
1175s Setting up systemd-resolved (255.4-1ubuntu5) ...
1177s Setting up python3.11 (3.11.8-1build4) ...
1179s Setting up telnet (0.17+2.5-3ubuntu3) ...
1179s Setting up initramfs-tools (0.142ubuntu23) ...
1179s update-initramfs: deferring update (trigger activated)
1179s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ...
1179s Setting up libcurl4t64:armhf (8.5.0-2ubuntu8) ...
1179s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ...
1179s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ...
1179s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ...
1179s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ...
1179s Setting up plymouth (24.004.60-1ubuntu6) ...
1179s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
1179s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
1180s Setting up iproute2 (6.1.0-1ubuntu5) ...
1180s Setting up openssh-client (1:9.6p1-3ubuntu11) ...
1180s Setting up libgusb2:armhf (0.4.8-1build1) ...
1180s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ...
1180s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ...
1180s Setting up parted (3.6-3.1build2) ...
1180s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ...
1180s Setting up python3 (3.12.2-0ubuntu1) ...
1181s Setting up binutils (2.42-4ubuntu1) ...
1181s Setting up python3-markupsafe (2.1.5-1build1) ...
1181s Setting up libblockdev3:armhf (3.1.0-1build1) ...
1181s Setting up libjcat1:armhf (0.2.0-2build2) ...
1181s Setting up dpkg-dev (1.22.6ubuntu4) ...
1181s Setting up libblockdev-part3:armhf (3.1.0-1build1) ...
1181s Setting up dirmngr (2.4.4-2ubuntu15) ...
1181s Setting up dbus-user-session (1.14.10-4ubuntu2) ...
1181s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ...
1182s update-initramfs: deferring update (trigger activated)
1182s Setting up python3-cryptography (41.0.7-4build2) ...
1182s Setting up python3-gi (3.47.0-3build1) ...
1183s Setting up python3-typing-extensions (4.10.0-1) ...
1183s Setting up lsof (4.95.0-1build2) ...
1183s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ...
1183s Setting up libnsl2:armhf (1.3.0-3build2) ...
1183s Setting up gnupg (2.4.4-2ubuntu15) ...
1183s Setting up python3-netplan (1.0-1) ...
1183s Setting up curl (8.5.0-2ubuntu8) ...
1183s Setting up libvolume-key1:armhf (0.3.12-7build1) ...
1183s Setting up bind9-host (1:9.18.24-0ubuntu3) ...
1183s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ...
1184s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
1184s Setting up python3-distutils (3.12.2-3ubuntu1.1) ...
1185s python3.12: can't get files for byte-compilation
1185s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ...
1185s Setting up python3-dbus (1.3.2-5build2) ...
1185s Setting up python3-setuptools (68.1.2-2ubuntu1) ...
1186s Setting up gpg-wks-client (2.4.4-2ubuntu15) ...
1186s Setting up openssh-server (1:9.6p1-3ubuntu11) ...
1187s Replacing config file /etc/ssh/sshd_config with new version
1189s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket.

1209s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ...
1209s Setting up python3-gdbm:armhf (3.12.2-3ubuntu1.1) ...
1209s Setting up python3-apt (2.7.7) ...
1209s Setting up libfwupd2:armhf (1.9.15-2) ...
1209s Setting up python3-yaml (6.0.1-2build1) ...
1209s Setting up libqmi-proxy (1.35.2-0ubuntu1) ...
1209s Setting up netplan.io (1.0-1) ...
1209s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ...
1209s Setting up ubuntu-pro-client (31.2.2) ...
1210s apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
1210s 
1213s Setting up fwupd (1.9.15-2) ...
1213s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
1214s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
1214s fwupd.service is a disabled or a static unit not running, not starting it.
1214s Setting up ubuntu-pro-client-l10n (31.2.2) ...
1214s Setting up udisks2 (2.10.1-6) ...
1214s sda: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/uevent': Permission denied

1214s sda1: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/sda1/uevent': Permission denied

1214s sda15: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/sda15/uevent': Permission denied

1214s sda2: Failed to write 'change' to '/sys/devices/platform/LNRO0005:1f/virtio2/host0/target0:0:0/0:0:0:0/block/sda/sda2/uevent': Permission denied

1214s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied

1214s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied

1214s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied

1214s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied

1214s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied

1214s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied

1214s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied

1214s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied

1215s Setting up cloud-init (24.1.2-0ubuntu1) ...
1218s Setting up ubuntu-minimal (1.536build1) ...
1218s Setting up ubuntu-standard (1.536build1) ...
1218s Processing triggers for libc-bin (2.39-0ubuntu6) ...
1218s Processing triggers for ufw (0.36.2-5) ...
1218s Processing triggers for install-info (7.1-3build1) ...
1218s Processing triggers for initramfs-tools (0.142ubuntu23) ...
1221s Reading package lists...
1222s Building dependency tree...
1222s Reading state information...
1224s The following packages will be REMOVED:
1224s   linux-headers-6.8.0-11* python3-distutils* python3-lib2to3*
1224s 0 upgraded, 0 newly installed, 3 to remove and 1 not upgraded.
1224s After this operation, 86.5 MB disk space will be freed.
1224s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78647 files and directories currently installed.)
1224s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ...
1226s Removing python3-distutils (3.12.2-3ubuntu1.1) ...
1227s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ...
1229s autopkgtest [12:38:29]: rebooting testbed after setup commands that affected boot
1332s Reading package lists...
1332s Building dependency tree...
1332s Reading state information...
1333s Starting pkgProblemResolver with broken count: 0
1333s Starting 2 pkgProblemResolver with broken count: 0
1333s Done
1335s The following additional packages will be installed:
1335s   build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
1335s   cpp-arm-linux-gnueabihf dctrl-tools fontconfig fontconfig-config
1335s   fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax
1335s   g++ g++-13 g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-13
1335s   gcc-13-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gfortran gfortran-13
1335s   gfortran-13-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf icu-devtools
1335s   libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev
1335s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
1335s   libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
1335s   libgraphite2-3 libharfbuzz0b libice6 libicu-dev libisl23 libjbig0
1335s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
1335s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
1335s   libjs-mathjax liblapack-dev liblapack3 liblerc4 liblzma-dev libmpc3
1335s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
1335s   libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
1335s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
1335s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
1335s   libtiff6 libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
1335s   libxrender1 libxss1 libxt6t64 linux-libc-dev node-normalize.css pkg-config
1335s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
1335s   r-cran-base64enc r-cran-cli r-cran-colorspace r-cran-commonmark
1335s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue
1335s   r-cran-gtable r-cran-highr r-cran-isoband r-cran-knitr r-cran-labeling
1335s   r-cran-lattice r-cran-lifecycle r-cran-magrittr r-cran-markdown r-cran-mass
1335s   r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme
1335s   r-cran-pillar r-cran-pkgconfig r-cran-r6 r-cran-rcolorbrewer r-cran-rlang
1335s   r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
1335s   r-cran-withr r-cran-xfun r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils
1335s   zip zlib1g-dev
1335s Suggested packages:
1335s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
1335s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
1335s   gdb-arm-linux-gnueabihf gfortran-doc gfortran-13-doc libcoarrays-dev
1335s   liblapack-doc glibc-doc icu-doc fonts-mathjax-extras fonts-stix
1335s   libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
1335s   tcl8.6 tk8.6 libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib
1335s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
1335s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
1335s   texlive-latex-recommended texlive-latex-extra texinfo r-cran-kernsmooth
1335s   r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
1335s   r-cran-dplyr r-cran-png r-cran-jpeg r-cran-rmarkdown r-cran-viridis
1335s   r-cran-covr r-cran-magick r-cran-sf r-cran-bit64 r-cran-dbi
1335s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-stringi
1335s   r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-bench
1335s   r-cran-blob r-cran-brio r-cran-callr r-cran-crayon r-cran-here r-cran-hms
1335s   r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr
1335s Recommended packages:
1335s   bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools
1335s   r-recommended r-doc-html r-cran-callr r-cran-covr r-cran-crayon
1335s   r-cran-digest r-cran-htmltools r-cran-htmlwidgets r-cran-mockery
1335s   r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
1335s   r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-curl r-cran-xml2
1335s   r-cran-unitizer r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj
1335s   r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
1335s   r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-dbi
1335s   r-cran-rsqlite r-cran-waldo r-cran-testit r-cran-bslib r-cran-codetools
1335s   r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png
1335s   r-cran-reticulate r-cran-rgl r-cran-sass r-cran-tikzdevice r-cran-tinytex
1335s   r-cran-webshot node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-rcurl
1335s   r-cran-r.devices r-cran-r.rsp r-cran-lubridate r-cran-fs r-cran-usethis
1335s   r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi r-cran-data.table
1335s   r-cran-mockr r-cran-formattable r-cran-generics r-cran-pkgdown
1335s   r-cran-zeallot r-cran-mime r-cran-remotes r-cran-renv r-cran-jsonlite
1335s   r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
1335s   x11-utils x11-xserver-utils
1335s The following NEW packages will be installed:
1335s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
1335s   cpp-arm-linux-gnueabihf dctrl-tools fontconfig fontconfig-config
1335s   fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax
1335s   g++ g++-13 g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-13
1335s   gcc-13-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gfortran gfortran-13
1335s   gfortran-13-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf icu-devtools
1335s   libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev
1335s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
1335s   libfreetype6 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
1335s   libgraphite2-3 libharfbuzz0b libice6 libicu-dev libisl23 libjbig0
1335s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
1335s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
1335s   libjs-mathjax liblapack-dev liblapack3 liblerc4 liblzma-dev libmpc3
1335s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
1335s   libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
1335s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
1335s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
1335s   libtiff6 libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
1336s   libxrender1 libxss1 libxt6t64 linux-libc-dev node-normalize.css pkg-config
1336s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
1336s   r-cran-base64enc r-cran-cli r-cran-colorspace r-cran-commonmark
1336s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue
1336s   r-cran-gtable r-cran-highr r-cran-isoband r-cran-knitr r-cran-labeling
1336s   r-cran-lattice r-cran-lifecycle r-cran-magrittr r-cran-markdown r-cran-mass
1336s   r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme
1336s   r-cran-pillar r-cran-pkgconfig r-cran-r6 r-cran-rcolorbrewer r-cran-rlang
1336s   r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite
1336s   r-cran-withr r-cran-xfun r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils
1336s   zip zlib1g-dev
1336s 0 upgraded, 146 newly installed, 0 to remove and 1 not upgraded.
1336s Need to get 150 MB/150 MB of archives.
1336s After this operation, 397 MB of additional disk space will be used.
1336s Get:1 /tmp/autopkgtest.5uVHjq/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [752 B]
1336s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu6 [19.1 kB]
1336s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-libc-dev armhf 6.8.0-20.20 [1555 kB]
1336s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB]
1336s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu6 [63.7 kB]
1336s Get:6 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu6 [1351 kB]
1336s Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libisl23 armhf 0.26-3 [595 kB]
1336s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libmpc3 armhf 1.3.1-1 [46.4 kB]
1336s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [8757 kB]
1337s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13 armhf 13.2.0-21ubuntu1 [1028 B]
1337s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B]
1337s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB]
1337s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcc1-0 armhf 14-20240315-1ubuntu1 [39.0 kB]
1337s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240315-1ubuntu1 [125 kB]
1337s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libatomic1 armhf 14-20240315-1ubuntu1 [7824 B]
1337s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libasan8 armhf 14-20240315-1ubuntu1 [2941 kB]
1337s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libubsan1 armhf 14-20240315-1ubuntu1 [1152 kB]
1337s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-13-dev armhf 13.2.0-21ubuntu1 [899 kB]
1337s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [16.8 MB]
1338s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13 armhf 13.2.0-21ubuntu1 [450 kB]
1338s Get:21 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B]
1338s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B]
1338s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++-13-dev armhf 13.2.0-21ubuntu1 [2456 kB]
1339s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [9938 kB]
1339s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13 armhf 13.2.0-21ubuntu1 [14.5 kB]
1339s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B]
1339s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B]
1339s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf build-essential armhf 12.10ubuntu1 [4928 B]
1339s Get:29 http://ftpmaster.internal/ubuntu noble/main armhf dctrl-tools armhf 2.24-3build2 [57.2 kB]
1339s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfreetype6 armhf 2.13.2+dfsg-1build2 [331 kB]
1339s Get:31 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
1340s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
1340s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu1 [37.4 kB]
1340s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu1 [113 kB]
1340s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig armhf 2.15.0-1.1ubuntu1 [189 kB]
1340s Get:36 http://ftpmaster.internal/ubuntu noble/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
1340s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
1340s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran5 armhf 14-20240315-1ubuntu1 [312 kB]
1340s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran-13-dev armhf 13.2.0-21ubuntu1 [359 kB]
1340s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-21ubuntu1 [9179 kB]
1341s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gfortran-13 armhf 13.2.0-21ubuntu1 [10.9 kB]
1341s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1024 B]
1341s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf gfortran armhf 4:13.2.0-7ubuntu1 [1166 B]
1341s Get:44 http://ftpmaster.internal/ubuntu noble/main armhf icu-devtools armhf 74.2-1ubuntu1 [201 kB]
1341s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB]
1341s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libblas-dev armhf 3.12.0-3 [132 kB]
1341s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-dev armhf 1.0.8-5ubuntu1 [30.4 kB]
1341s Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB]
1341s Get:49 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB]
1341s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B]
1341s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB]
1341s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcairo2 armhf 1.18.0-1ubuntu1 [482 kB]
1341s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libdatrie1 armhf 0.2.13-3 [16.9 kB]
1341s Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB]
1341s Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libgraphite2-3 armhf 1.3.14-2 [72.7 kB]
1341s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libharfbuzz0b armhf 8.3.0-2build1 [446 kB]
1341s Get:57 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB]
1341s Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB]
1341s Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libicu-dev armhf 74.2-1ubuntu1 [11.6 MB]
1342s Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB]
1342s Get:61 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu1 [263 kB]
1342s Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
1342s Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B]
1342s Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B]
1342s Get:65 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
1342s Get:66 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
1342s Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
1342s Get:68 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
1342s Get:69 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB]
1342s Get:70 http://ftpmaster.internal/ubuntu noble/main armhf liblapack-dev armhf 3.12.0-3 [2177 kB]
1342s Get:71 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB]
1342s Get:72 http://ftpmaster.internal/ubuntu noble/main armhf libncurses-dev armhf 6.4+20240113-1ubuntu1 [501 kB]
1342s Get:73 http://ftpmaster.internal/ubuntu noble/main armhf libthai-data all 0.1.29-2 [158 kB]
1342s Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libthai0 armhf 0.1.29-2 [15.1 kB]
1342s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [206 kB]
1343s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [36.4 kB]
1343s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [24.9 kB]
1343s Get:78 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB]
1343s Get:79 http://ftpmaster.internal/ubuntu noble/main armhf libpaper-utils armhf 1.1.29 [8170 B]
1343s Get:80 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-16-0 armhf 10.42-4ubuntu1 [180 kB]
1343s Get:81 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-32-0 armhf 10.42-4ubuntu1 [171 kB]
1343s Get:82 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-posix3 armhf 10.42-4ubuntu1 [6096 B]
1343s Get:83 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-dev armhf 10.42-4ubuntu1 [664 kB]
1343s Get:84 http://ftpmaster.internal/ubuntu noble/main armhf libpkgconf3 armhf 1.8.1-2 [26.3 kB]
1343s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu1 [880 kB]
1343s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng-dev armhf 1.6.43-3 [248 kB]
1343s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline-dev armhf 8.2-4 [153 kB]
1343s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsharpyuv0 armhf 1.3.2-0.4build2 [13.6 kB]
1343s Get:89 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB]
1343s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [903 kB]
1343s Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB]
1343s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libwebp7 armhf 1.3.2-0.4build2 [183 kB]
1343s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu1 [178 kB]
1343s Get:94 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB]
1343s Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B]
1343s Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.14-1 [681 kB]
1343s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxt6t64 armhf 1:1.2.1-1.2 [145 kB]
1343s Get:98 http://ftpmaster.internal/ubuntu noble/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB]
1343s Get:99 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf-bin armhf 1.8.1-2 [20.6 kB]
1343s Get:100 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf armhf 1.8.1-2 [16.7 kB]
1343s Get:101 http://ftpmaster.internal/ubuntu noble/main armhf pkg-config armhf 1.8.1-2 [7170 B]
1343s Get:102 http://ftpmaster.internal/ubuntu noble/main armhf zip armhf 3.0-13 [162 kB]
1343s Get:103 http://ftpmaster.internal/ubuntu noble/main armhf unzip armhf 6.0-28ubuntu3 [163 kB]
1344s Get:104 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
1344s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-core armhf 4.3.3-2build1 [26.6 MB]
1356s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma-dev armhf 5.6.0-0.2 [166 kB]
1356s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-dev all 4.3.3-2build1 [4334 B]
1356s Get:108 http://ftpmaster.internal/ubuntu noble/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1356s Get:109 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB]
1356s Get:110 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB]
1356s Get:111 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1538 kB]
1356s Get:112 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-commonmark armhf 1.9.1-1 [110 kB]
1356s Get:113 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-evaluate all 0.23-1 [90.2 kB]
1356s Get:114 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
1357s Get:115 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-farver armhf 2.1.1-1 [1346 kB]
1357s Get:116 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB]
1357s Get:117 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rlang armhf 1.1.3-1 [1658 kB]
1357s Get:118 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
1357s Get:119 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
1357s Get:120 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB]
1357s Get:121 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mass armhf 7.3-60.0.1-1 [1118 kB]
1358s Get:122 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-lattice armhf 0.22-5-1 [1341 kB]
1358s Get:123 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-nlme armhf 3.1.164-1 [2252 kB]
1358s Get:124 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrix armhf 1.6-5-1 [3762 kB]
1359s Get:125 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-mgcv armhf 1.9-1-1 [3205 kB]
1359s Get:126 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB]
1359s Get:127 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB]
1360s Get:128 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB]
1360s Get:129 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
1360s Get:130 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB]
1360s Get:131 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-scales all 1.3.0-1 [603 kB]
1360s Get:132 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB]
1360s Get:133 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB]
1360s Get:134 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB]
1360s Get:135 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
1360s Get:136 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
1360s Get:137 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-tibble armhf 3.2.1+dfsg-2 [415 kB]
1360s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-cran-withr all 3.0.0+dfsg-1 [228 kB]
1360s Get:139 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
1361s Get:140 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-xfun armhf 0.41+dfsg-1 [415 kB]
1361s Get:141 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-highr all 0.10+dfsg-1 [38.3 kB]
1361s Get:142 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-yaml armhf 2.3.8-1 [99.0 kB]
1361s Get:143 http://ftpmaster.internal/ubuntu noble/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
1362s Get:144 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-knitr all 1.45+dfsg-1 [917 kB]
1362s Get:145 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-markdown all 1.12+dfsg-1 [179 kB]
1362s Get:146 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-matrixstats armhf 1.2.0-1 [478 kB]
1364s Preconfiguring packages ...
1364s Fetched 150 MB in 26s (5703 kB/s)
1364s Selecting previously unselected package libc-dev-bin.
1364s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58436 files and directories currently installed.)
1364s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_armhf.deb ...
1364s Unpacking libc-dev-bin (2.39-0ubuntu6) ...
1364s Selecting previously unselected package linux-libc-dev:armhf.
1364s Preparing to unpack .../001-linux-libc-dev_6.8.0-20.20_armhf.deb ...
1364s Unpacking linux-libc-dev:armhf (6.8.0-20.20) ...
1364s Selecting previously unselected package libcrypt-dev:armhf.
1364s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_armhf.deb ...
1364s Unpacking libcrypt-dev:armhf (1:4.4.36-4) ...
1364s Selecting previously unselected package rpcsvc-proto.
1364s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_armhf.deb ...
1364s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
1364s Selecting previously unselected package libc6-dev:armhf.
1365s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_armhf.deb ...
1365s Unpacking libc6-dev:armhf (2.39-0ubuntu6) ...
1365s Selecting previously unselected package libisl23:armhf.
1365s Preparing to unpack .../005-libisl23_0.26-3_armhf.deb ...
1365s Unpacking libisl23:armhf (0.26-3) ...
1365s Selecting previously unselected package libmpc3:armhf.
1365s Preparing to unpack .../006-libmpc3_1.3.1-1_armhf.deb ...
1365s Unpacking libmpc3:armhf (1.3.1-1) ...
1365s Selecting previously unselected package cpp-13-arm-linux-gnueabihf.
1365s Preparing to unpack .../007-cpp-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ...
1365s Unpacking cpp-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1365s Selecting previously unselected package cpp-13.
1365s Preparing to unpack .../008-cpp-13_13.2.0-21ubuntu1_armhf.deb ...
1365s Unpacking cpp-13 (13.2.0-21ubuntu1) ...
1365s Selecting previously unselected package cpp-arm-linux-gnueabihf.
1365s Preparing to unpack .../009-cpp-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
1365s Unpacking cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1365s Selecting previously unselected package cpp.
1365s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_armhf.deb ...
1365s Unpacking cpp (4:13.2.0-7ubuntu1) ...
1365s Selecting previously unselected package libcc1-0:armhf.
1366s Preparing to unpack .../011-libcc1-0_14-20240315-1ubuntu1_armhf.deb ...
1366s Unpacking libcc1-0:armhf (14-20240315-1ubuntu1) ...
1366s Selecting previously unselected package libgomp1:armhf.
1366s Preparing to unpack .../012-libgomp1_14-20240315-1ubuntu1_armhf.deb ...
1366s Unpacking libgomp1:armhf (14-20240315-1ubuntu1) ...
1366s Selecting previously unselected package libatomic1:armhf.
1366s Preparing to unpack .../013-libatomic1_14-20240315-1ubuntu1_armhf.deb ...
1366s Unpacking libatomic1:armhf (14-20240315-1ubuntu1) ...
1366s Selecting previously unselected package libasan8:armhf.
1366s Preparing to unpack .../014-libasan8_14-20240315-1ubuntu1_armhf.deb ...
1366s Unpacking libasan8:armhf (14-20240315-1ubuntu1) ...
1366s Selecting previously unselected package libubsan1:armhf.
1366s Preparing to unpack .../015-libubsan1_14-20240315-1ubuntu1_armhf.deb ...
1366s Unpacking libubsan1:armhf (14-20240315-1ubuntu1) ...
1366s Selecting previously unselected package libgcc-13-dev:armhf.
1366s Preparing to unpack .../016-libgcc-13-dev_13.2.0-21ubuntu1_armhf.deb ...
1366s Unpacking libgcc-13-dev:armhf (13.2.0-21ubuntu1) ...
1366s Selecting previously unselected package gcc-13-arm-linux-gnueabihf.
1366s Preparing to unpack .../017-gcc-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ...
1366s Unpacking gcc-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1367s Selecting previously unselected package gcc-13.
1367s Preparing to unpack .../018-gcc-13_13.2.0-21ubuntu1_armhf.deb ...
1367s Unpacking gcc-13 (13.2.0-21ubuntu1) ...
1367s Selecting previously unselected package gcc-arm-linux-gnueabihf.
1367s Preparing to unpack .../019-gcc-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
1367s Unpacking gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1367s Selecting previously unselected package gcc.
1367s Preparing to unpack .../020-gcc_4%3a13.2.0-7ubuntu1_armhf.deb ...
1367s Unpacking gcc (4:13.2.0-7ubuntu1) ...
1367s Selecting previously unselected package libstdc++-13-dev:armhf.
1367s Preparing to unpack .../021-libstdc++-13-dev_13.2.0-21ubuntu1_armhf.deb ...
1367s Unpacking libstdc++-13-dev:armhf (13.2.0-21ubuntu1) ...
1367s Selecting previously unselected package g++-13-arm-linux-gnueabihf.
1367s Preparing to unpack .../022-g++-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ...
1367s Unpacking g++-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1368s Selecting previously unselected package g++-13.
1368s Preparing to unpack .../023-g++-13_13.2.0-21ubuntu1_armhf.deb ...
1368s Unpacking g++-13 (13.2.0-21ubuntu1) ...
1368s Selecting previously unselected package g++-arm-linux-gnueabihf.
1368s Preparing to unpack .../024-g++-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
1368s Unpacking g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1368s Selecting previously unselected package g++.
1368s Preparing to unpack .../025-g++_4%3a13.2.0-7ubuntu1_armhf.deb ...
1368s Unpacking g++ (4:13.2.0-7ubuntu1) ...
1368s Selecting previously unselected package build-essential.
1368s Preparing to unpack .../026-build-essential_12.10ubuntu1_armhf.deb ...
1368s Unpacking build-essential (12.10ubuntu1) ...
1368s Selecting previously unselected package dctrl-tools.
1368s Preparing to unpack .../027-dctrl-tools_2.24-3build2_armhf.deb ...
1368s Unpacking dctrl-tools (2.24-3build2) ...
1368s Selecting previously unselected package libfreetype6:armhf.
1368s Preparing to unpack .../028-libfreetype6_2.13.2+dfsg-1build2_armhf.deb ...
1368s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build2) ...
1368s Selecting previously unselected package fonts-dejavu-mono.
1368s Preparing to unpack .../029-fonts-dejavu-mono_2.37-8_all.deb ...
1368s Unpacking fonts-dejavu-mono (2.37-8) ...
1368s Selecting previously unselected package fonts-dejavu-core.
1368s Preparing to unpack .../030-fonts-dejavu-core_2.37-8_all.deb ...
1368s Unpacking fonts-dejavu-core (2.37-8) ...
1368s Selecting previously unselected package fontconfig-config.
1368s Preparing to unpack .../031-fontconfig-config_2.15.0-1.1ubuntu1_armhf.deb ...
1369s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ...
1369s Selecting previously unselected package libfontconfig1:armhf.
1369s Preparing to unpack .../032-libfontconfig1_2.15.0-1.1ubuntu1_armhf.deb ...
1369s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
1369s Selecting previously unselected package fontconfig.
1369s Preparing to unpack .../033-fontconfig_2.15.0-1.1ubuntu1_armhf.deb ...
1369s Unpacking fontconfig (2.15.0-1.1ubuntu1) ...
1369s Selecting previously unselected package fonts-glyphicons-halflings.
1369s Preparing to unpack .../034-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
1369s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
1369s Selecting previously unselected package fonts-mathjax.
1369s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
1369s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
1369s Selecting previously unselected package libgfortran5:armhf.
1369s Preparing to unpack .../036-libgfortran5_14-20240315-1ubuntu1_armhf.deb ...
1369s Unpacking libgfortran5:armhf (14-20240315-1ubuntu1) ...
1369s Selecting previously unselected package libgfortran-13-dev:armhf.
1369s Preparing to unpack .../037-libgfortran-13-dev_13.2.0-21ubuntu1_armhf.deb ...
1369s Unpacking libgfortran-13-dev:armhf (13.2.0-21ubuntu1) ...
1369s Selecting previously unselected package gfortran-13-arm-linux-gnueabihf.
1369s Preparing to unpack .../038-gfortran-13-arm-linux-gnueabihf_13.2.0-21ubuntu1_armhf.deb ...
1369s Unpacking gfortran-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1370s Selecting previously unselected package gfortran-13.
1370s Preparing to unpack .../039-gfortran-13_13.2.0-21ubuntu1_armhf.deb ...
1370s Unpacking gfortran-13 (13.2.0-21ubuntu1) ...
1370s Selecting previously unselected package gfortran-arm-linux-gnueabihf.
1370s Preparing to unpack .../040-gfortran-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
1370s Unpacking gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1370s Selecting previously unselected package gfortran.
1370s Preparing to unpack .../041-gfortran_4%3a13.2.0-7ubuntu1_armhf.deb ...
1370s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
1370s Selecting previously unselected package icu-devtools.
1370s Preparing to unpack .../042-icu-devtools_74.2-1ubuntu1_armhf.deb ...
1370s Unpacking icu-devtools (74.2-1ubuntu1) ...
1370s Selecting previously unselected package libblas3:armhf.
1370s Preparing to unpack .../043-libblas3_3.12.0-3_armhf.deb ...
1370s Unpacking libblas3:armhf (3.12.0-3) ...
1370s Selecting previously unselected package libblas-dev:armhf.
1370s Preparing to unpack .../044-libblas-dev_3.12.0-3_armhf.deb ...
1370s Unpacking libblas-dev:armhf (3.12.0-3) ...
1370s Selecting previously unselected package libbz2-dev:armhf.
1370s Preparing to unpack .../045-libbz2-dev_1.0.8-5ubuntu1_armhf.deb ...
1370s Unpacking libbz2-dev:armhf (1.0.8-5ubuntu1) ...
1370s Selecting previously unselected package libpixman-1-0:armhf.
1370s Preparing to unpack .../046-libpixman-1-0_0.42.2-1_armhf.deb ...
1370s Unpacking libpixman-1-0:armhf (0.42.2-1) ...
1370s Selecting previously unselected package libxcb-render0:armhf.
1370s Preparing to unpack .../047-libxcb-render0_1.15-1_armhf.deb ...
1370s Unpacking libxcb-render0:armhf (1.15-1) ...
1370s Selecting previously unselected package libxcb-shm0:armhf.
1370s Preparing to unpack .../048-libxcb-shm0_1.15-1_armhf.deb ...
1370s Unpacking libxcb-shm0:armhf (1.15-1) ...
1370s Selecting previously unselected package libxrender1:armhf.
1370s Preparing to unpack .../049-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
1370s Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
1370s Selecting previously unselected package libcairo2:armhf.
1370s Preparing to unpack .../050-libcairo2_1.18.0-1ubuntu1_armhf.deb ...
1370s Unpacking libcairo2:armhf (1.18.0-1ubuntu1) ...
1370s Selecting previously unselected package libdatrie1:armhf.
1370s Preparing to unpack .../051-libdatrie1_0.2.13-3_armhf.deb ...
1370s Unpacking libdatrie1:armhf (0.2.13-3) ...
1370s Selecting previously unselected package libdeflate0:armhf.
1370s Preparing to unpack .../052-libdeflate0_1.19-1_armhf.deb ...
1370s Unpacking libdeflate0:armhf (1.19-1) ...
1370s Selecting previously unselected package libgraphite2-3:armhf.
1370s Preparing to unpack .../053-libgraphite2-3_1.3.14-2_armhf.deb ...
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1370s Selecting previously unselected package libharfbuzz0b:armhf.
1371s Preparing to unpack .../054-libharfbuzz0b_8.3.0-2build1_armhf.deb ...
1371s Unpacking libharfbuzz0b:armhf (8.3.0-2build1) ...
1371s Selecting previously unselected package x11-common.
1371s Preparing to unpack .../055-x11-common_1%3a7.7+23ubuntu2_all.deb ...
1371s Unpacking x11-common (1:7.7+23ubuntu2) ...
1371s Selecting previously unselected package libice6:armhf.
1371s Preparing to unpack .../056-libice6_2%3a1.0.10-1build2_armhf.deb ...
1371s Unpacking libice6:armhf (2:1.0.10-1build2) ...
1371s Selecting previously unselected package libicu-dev:armhf.
1371s Preparing to unpack .../057-libicu-dev_74.2-1ubuntu1_armhf.deb ...
1371s Unpacking libicu-dev:armhf (74.2-1ubuntu1) ...
1373s Selecting previously unselected package libjpeg-turbo8:armhf.
1373s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ...
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1373s Preparing to unpack .../059-libjpeg-turbo8-dev_2.1.5-2ubuntu1_armhf.deb ...
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1373s Selecting previously unselected package libjpeg8:armhf.
1373s Preparing to unpack .../060-libjpeg8_8c-2ubuntu11_armhf.deb ...
1373s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
1373s Selecting previously unselected package libjpeg8-dev:armhf.
1373s Preparing to unpack .../061-libjpeg8-dev_8c-2ubuntu11_armhf.deb ...
1373s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ...
1373s Selecting previously unselected package libjpeg-dev:armhf.
1373s Preparing to unpack .../062-libjpeg-dev_8c-2ubuntu11_armhf.deb ...
1373s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ...
1373s Selecting previously unselected package libjs-bootstrap.
1373s Preparing to unpack .../063-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
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1373s Selecting previously unselected package libjs-highlight.js.
1373s Preparing to unpack .../064-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
1373s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
1373s Selecting previously unselected package libjs-jquery.
1373s Preparing to unpack .../065-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
1373s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1373s Selecting previously unselected package libjs-jquery-datatables.
1373s Preparing to unpack .../066-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
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1373s Selecting previously unselected package liblapack3:armhf.
1373s Preparing to unpack .../067-liblapack3_3.12.0-3_armhf.deb ...
1373s Unpacking liblapack3:armhf (3.12.0-3) ...
1373s Selecting previously unselected package liblapack-dev:armhf.
1373s Preparing to unpack .../068-liblapack-dev_3.12.0-3_armhf.deb ...
1373s Unpacking liblapack-dev:armhf (3.12.0-3) ...
1373s Selecting previously unselected package liblerc4:armhf.
1373s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_armhf.deb ...
1373s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu1) ...
1373s Selecting previously unselected package libncurses-dev:armhf.
1373s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_armhf.deb ...
1373s Unpacking libncurses-dev:armhf (6.4+20240113-1ubuntu1) ...
1373s Selecting previously unselected package libthai-data.
1373s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
1373s Unpacking libthai-data (0.1.29-2) ...
1373s Selecting previously unselected package libthai0:armhf.
1373s Preparing to unpack .../072-libthai0_0.1.29-2_armhf.deb ...
1373s Unpacking libthai0:armhf (0.1.29-2) ...
1373s Selecting previously unselected package libpango-1.0-0:armhf.
1373s Preparing to unpack .../073-libpango-1.0-0_1.52.1+ds-1_armhf.deb ...
1373s Unpacking libpango-1.0-0:armhf (1.52.1+ds-1) ...
1373s Selecting previously unselected package libpangoft2-1.0-0:armhf.
1373s Preparing to unpack .../074-libpangoft2-1.0-0_1.52.1+ds-1_armhf.deb ...
1373s Unpacking libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
1373s Selecting previously unselected package libpangocairo-1.0-0:armhf.
1373s Preparing to unpack .../075-libpangocairo-1.0-0_1.52.1+ds-1_armhf.deb ...
1373s Unpacking libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
1373s Selecting previously unselected package libpaper1:armhf.
1373s Preparing to unpack .../076-libpaper1_1.1.29_armhf.deb ...
1373s Unpacking libpaper1:armhf (1.1.29) ...
1373s Selecting previously unselected package libpaper-utils.
1373s Preparing to unpack .../077-libpaper-utils_1.1.29_armhf.deb ...
1373s Unpacking libpaper-utils (1.1.29) ...
1373s Selecting previously unselected package libpcre2-16-0:armhf.
1373s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_armhf.deb ...
1373s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu1) ...
1373s Selecting previously unselected package libpcre2-32-0:armhf.
1373s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_armhf.deb ...
1373s Unpacking libpcre2-32-0:armhf (10.42-4ubuntu1) ...
1373s Selecting previously unselected package libpcre2-posix3:armhf.
1373s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_armhf.deb ...
1373s Unpacking libpcre2-posix3:armhf (10.42-4ubuntu1) ...
1373s Selecting previously unselected package libpcre2-dev:armhf.
1373s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_armhf.deb ...
1373s Unpacking libpcre2-dev:armhf (10.42-4ubuntu1) ...
1373s Selecting previously unselected package libpkgconf3:armhf.
1373s Preparing to unpack .../082-libpkgconf3_1.8.1-2_armhf.deb ...
1373s Unpacking libpkgconf3:armhf (1.8.1-2) ...
1373s Selecting previously unselected package zlib1g-dev:armhf.
1373s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ...
1373s Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu1) ...
1373s Selecting previously unselected package libpng-dev:armhf.
1373s Preparing to unpack .../084-libpng-dev_1.6.43-3_armhf.deb ...
1373s Unpacking libpng-dev:armhf (1.6.43-3) ...
1373s Selecting previously unselected package libreadline-dev:armhf.
1373s Preparing to unpack .../085-libreadline-dev_8.2-4_armhf.deb ...
1373s Unpacking libreadline-dev:armhf (8.2-4) ...
1373s Selecting previously unselected package libsharpyuv0:armhf.
1373s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4build2_armhf.deb ...
1373s Unpacking libsharpyuv0:armhf (1.3.2-0.4build2) ...
1373s Selecting previously unselected package libsm6:armhf.
1373s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_armhf.deb ...
1373s Unpacking libsm6:armhf (2:1.2.3-1build2) ...
1373s Selecting previously unselected package libtcl8.6:armhf.
1374s Preparing to unpack .../088-libtcl8.6_8.6.14+dfsg-1_armhf.deb ...
1374s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1) ...
1374s Selecting previously unselected package libjbig0:armhf.
1374s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_armhf.deb ...
1374s Unpacking libjbig0:armhf (2.1-6.1ubuntu1) ...
1374s Selecting previously unselected package libwebp7:armhf.
1374s Preparing to unpack .../090-libwebp7_1.3.2-0.4build2_armhf.deb ...
1374s Unpacking libwebp7:armhf (1.3.2-0.4build2) ...
1374s Selecting previously unselected package libtiff6:armhf.
1374s Preparing to unpack .../091-libtiff6_4.5.1+git230720-4ubuntu1_armhf.deb ...
1374s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
1374s Selecting previously unselected package libxft2:armhf.
1374s Preparing to unpack .../092-libxft2_2.3.6-1_armhf.deb ...
1374s Unpacking libxft2:armhf (2.3.6-1) ...
1374s Selecting previously unselected package libxss1:armhf.
1374s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_armhf.deb ...
1374s Unpacking libxss1:armhf (1:1.2.3-1build2) ...
1374s Selecting previously unselected package libtk8.6:armhf.
1374s Preparing to unpack .../094-libtk8.6_8.6.14-1_armhf.deb ...
1374s Unpacking libtk8.6:armhf (8.6.14-1) ...
1374s Selecting previously unselected package libxt6t64:armhf.
1374s Preparing to unpack .../095-libxt6t64_1%3a1.2.1-1.2_armhf.deb ...
1374s Unpacking libxt6t64:armhf (1:1.2.1-1.2) ...
1374s Selecting previously unselected package node-normalize.css.
1374s Preparing to unpack .../096-node-normalize.css_8.0.1-5_all.deb ...
1374s Unpacking node-normalize.css (8.0.1-5) ...
1374s Selecting previously unselected package pkgconf-bin.
1374s Preparing to unpack .../097-pkgconf-bin_1.8.1-2_armhf.deb ...
1374s Unpacking pkgconf-bin (1.8.1-2) ...
1374s Selecting previously unselected package pkgconf:armhf.
1374s Preparing to unpack .../098-pkgconf_1.8.1-2_armhf.deb ...
1374s Unpacking pkgconf:armhf (1.8.1-2) ...
1374s Selecting previously unselected package pkg-config:armhf.
1374s Preparing to unpack .../099-pkg-config_1.8.1-2_armhf.deb ...
1374s Unpacking pkg-config:armhf (1.8.1-2) ...
1374s Selecting previously unselected package zip.
1374s Preparing to unpack .../100-zip_3.0-13_armhf.deb ...
1374s Unpacking zip (3.0-13) ...
1375s Selecting previously unselected package unzip.
1375s Preparing to unpack .../101-unzip_6.0-28ubuntu3_armhf.deb ...
1375s Unpacking unzip (6.0-28ubuntu3) ...
1375s Selecting previously unselected package xdg-utils.
1375s Preparing to unpack .../102-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
1375s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
1375s Selecting previously unselected package r-base-core.
1375s Preparing to unpack .../103-r-base-core_4.3.3-2build1_armhf.deb ...
1375s Unpacking r-base-core (4.3.3-2build1) ...
1375s Selecting previously unselected package liblzma-dev:armhf.
1375s Preparing to unpack .../104-liblzma-dev_5.6.0-0.2_armhf.deb ...
1375s Unpacking liblzma-dev:armhf (5.6.0-0.2) ...
1375s Selecting previously unselected package r-base-dev.
1376s Preparing to unpack .../105-r-base-dev_4.3.3-2build1_all.deb ...
1376s Unpacking r-base-dev (4.3.3-2build1) ...
1376s Selecting previously unselected package pkg-r-autopkgtest.
1376s Preparing to unpack .../106-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
1376s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
1376s Selecting previously unselected package r-cran-base64enc.
1376s Preparing to unpack .../107-r-cran-base64enc_0.1-3-3_armhf.deb ...
1376s Unpacking r-cran-base64enc (0.1-3-3) ...
1376s Selecting previously unselected package r-cran-cli.
1376s Preparing to unpack .../108-r-cran-cli_3.6.2-1_armhf.deb ...
1376s Unpacking r-cran-cli (3.6.2-1) ...
1376s Selecting previously unselected package r-cran-colorspace.
1376s Preparing to unpack .../109-r-cran-colorspace_2.1-0+dfsg-1_armhf.deb ...
1376s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
1376s Selecting previously unselected package r-cran-commonmark.
1376s Preparing to unpack .../110-r-cran-commonmark_1.9.1-1_armhf.deb ...
1376s Unpacking r-cran-commonmark (1.9.1-1) ...
1376s Selecting previously unselected package r-cran-evaluate.
1376s Preparing to unpack .../111-r-cran-evaluate_0.23-1_all.deb ...
1376s Unpacking r-cran-evaluate (0.23-1) ...
1376s Selecting previously unselected package r-cran-fansi.
1376s Preparing to unpack .../112-r-cran-fansi_1.0.5-1_armhf.deb ...
1376s Unpacking r-cran-fansi (1.0.5-1) ...
1376s Selecting previously unselected package r-cran-farver.
1376s Preparing to unpack .../113-r-cran-farver_2.1.1-1_armhf.deb ...
1376s Unpacking r-cran-farver (2.1.1-1) ...
1376s Selecting previously unselected package r-cran-glue.
1376s Preparing to unpack .../114-r-cran-glue_1.7.0-1_armhf.deb ...
1376s Unpacking r-cran-glue (1.7.0-1) ...
1376s Selecting previously unselected package r-cran-rlang.
1376s Preparing to unpack .../115-r-cran-rlang_1.1.3-1_armhf.deb ...
1376s Unpacking r-cran-rlang (1.1.3-1) ...
1377s Selecting previously unselected package r-cran-lifecycle.
1377s Preparing to unpack .../116-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
1377s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
1377s Selecting previously unselected package r-cran-gtable.
1377s Preparing to unpack .../117-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
1377s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
1377s Selecting previously unselected package r-cran-isoband.
1377s Preparing to unpack .../118-r-cran-isoband_0.2.7-1_armhf.deb ...
1377s Unpacking r-cran-isoband (0.2.7-1) ...
1377s Selecting previously unselected package r-cran-mass.
1377s Preparing to unpack .../119-r-cran-mass_7.3-60.0.1-1_armhf.deb ...
1377s Unpacking r-cran-mass (7.3-60.0.1-1) ...
1377s Selecting previously unselected package r-cran-lattice.
1377s Preparing to unpack .../120-r-cran-lattice_0.22-5-1_armhf.deb ...
1377s Unpacking r-cran-lattice (0.22-5-1) ...
1377s Selecting previously unselected package r-cran-nlme.
1377s Preparing to unpack .../121-r-cran-nlme_3.1.164-1_armhf.deb ...
1377s Unpacking r-cran-nlme (3.1.164-1) ...
1377s Selecting previously unselected package r-cran-matrix.
1377s Preparing to unpack .../122-r-cran-matrix_1.6-5-1_armhf.deb ...
1377s Unpacking r-cran-matrix (1.6-5-1) ...
1377s Selecting previously unselected package r-cran-mgcv.
1377s Preparing to unpack .../123-r-cran-mgcv_1.9-1-1_armhf.deb ...
1377s Unpacking r-cran-mgcv (1.9-1-1) ...
1377s Selecting previously unselected package r-cran-labeling.
1377s Preparing to unpack .../124-r-cran-labeling_0.4.3-1_all.deb ...
1377s Unpacking r-cran-labeling (0.4.3-1) ...
1377s Selecting previously unselected package r-cran-munsell.
1377s Preparing to unpack .../125-r-cran-munsell_0.5.0-2build1_all.deb ...
1377s Unpacking r-cran-munsell (0.5.0-2build1) ...
1377s Selecting previously unselected package r-cran-r6.
1377s Preparing to unpack .../126-r-cran-r6_2.5.1-1_all.deb ...
1377s Unpacking r-cran-r6 (2.5.1-1) ...
1378s Selecting previously unselected package r-cran-rcolorbrewer.
1378s Preparing to unpack .../127-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
1378s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
1378s Selecting previously unselected package r-cran-viridislite.
1378s Preparing to unpack .../128-r-cran-viridislite_0.4.2-2_all.deb ...
1378s Unpacking r-cran-viridislite (0.4.2-2) ...
1378s Selecting previously unselected package r-cran-scales.
1378s Preparing to unpack .../129-r-cran-scales_1.3.0-1_all.deb ...
1378s Unpacking r-cran-scales (1.3.0-1) ...
1378s Selecting previously unselected package r-cran-magrittr.
1378s Preparing to unpack .../130-r-cran-magrittr_2.0.3-1_armhf.deb ...
1378s Unpacking r-cran-magrittr (2.0.3-1) ...
1378s Selecting previously unselected package r-cran-utf8.
1378s Preparing to unpack .../131-r-cran-utf8_1.2.4-1_armhf.deb ...
1378s Unpacking r-cran-utf8 (1.2.4-1) ...
1378s Selecting previously unselected package r-cran-vctrs.
1378s Preparing to unpack .../132-r-cran-vctrs_0.6.5-1_armhf.deb ...
1378s Unpacking r-cran-vctrs (0.6.5-1) ...
1378s Selecting previously unselected package r-cran-pillar.
1378s Preparing to unpack .../133-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
1378s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
1378s Selecting previously unselected package r-cran-pkgconfig.
1378s Preparing to unpack .../134-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
1378s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
1378s Selecting previously unselected package r-cran-tibble.
1378s Preparing to unpack .../135-r-cran-tibble_3.2.1+dfsg-2_armhf.deb ...
1378s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
1378s Selecting previously unselected package r-cran-withr.
1378s Preparing to unpack .../136-r-cran-withr_3.0.0+dfsg-1_all.deb ...
1378s Unpacking r-cran-withr (3.0.0+dfsg-1) ...
1378s Selecting previously unselected package r-cran-ggplot2.
1379s Preparing to unpack .../137-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
1379s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
1379s Selecting previously unselected package r-cran-xfun.
1379s Preparing to unpack .../138-r-cran-xfun_0.41+dfsg-1_armhf.deb ...
1379s Unpacking r-cran-xfun (0.41+dfsg-1) ...
1379s Selecting previously unselected package r-cran-highr.
1379s Preparing to unpack .../139-r-cran-highr_0.10+dfsg-1_all.deb ...
1379s Unpacking r-cran-highr (0.10+dfsg-1) ...
1379s Selecting previously unselected package r-cran-yaml.
1379s Preparing to unpack .../140-r-cran-yaml_2.3.8-1_armhf.deb ...
1379s Unpacking r-cran-yaml (2.3.8-1) ...
1379s Selecting previously unselected package libjs-mathjax.
1379s Preparing to unpack .../141-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
1379s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
1381s Selecting previously unselected package r-cran-knitr.
1381s Preparing to unpack .../142-r-cran-knitr_1.45+dfsg-1_all.deb ...
1381s Unpacking r-cran-knitr (1.45+dfsg-1) ...
1381s Selecting previously unselected package r-cran-markdown.
1381s Preparing to unpack .../143-r-cran-markdown_1.12+dfsg-1_all.deb ...
1381s Unpacking r-cran-markdown (1.12+dfsg-1) ...
1381s Selecting previously unselected package r-cran-matrixstats.
1381s Preparing to unpack .../144-r-cran-matrixstats_1.2.0-1_armhf.deb ...
1381s Unpacking r-cran-matrixstats (1.2.0-1) ...
1381s Selecting previously unselected package autopkgtest-satdep.
1381s Preparing to unpack .../145-2-autopkgtest-satdep.deb ...
1381s Unpacking autopkgtest-satdep (0) ...
1381s Setting up libgraphite2-3:armhf (1.3.14-2) ...
1381s Setting up libpixman-1-0:armhf (0.42.2-1) ...
1381s Setting up libsharpyuv0:armhf (1.3.2-0.4build2) ...
1381s Setting up libpaper1:armhf (1.1.29) ...
1381s 
1381s Creating config file /etc/papersize with new version
1381s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
1381s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ...
1381s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
1381s Setting up libxrender1:armhf (1:0.9.10-1.1) ...
1381s Setting up libdatrie1:armhf (0.2.13-3) ...
1381s Setting up libxcb-render0:armhf (1.15-1) ...
1381s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
1381s Setting up unzip (6.0-28ubuntu3) ...
1381s Setting up x11-common (1:7.7+23ubuntu2) ...
1382s Setting up libdeflate0:armhf (1.19-1) ...
1382s Setting up linux-libc-dev:armhf (6.8.0-20.20) ...
1382s Setting up libxcb-shm0:armhf (1.15-1) ...
1382s Setting up libpaper-utils (1.1.29) ...
1382s Setting up libgomp1:armhf (14-20240315-1ubuntu1) ...
1382s Setting up libjbig0:armhf (2.1-6.1ubuntu1) ...
1382s Setting up libpcre2-16-0:armhf (10.42-4ubuntu1) ...
1382s Setting up zip (3.0-13) ...
1382s Setting up libpcre2-32-0:armhf (10.42-4ubuntu1) ...
1382s Setting up libblas3:armhf (3.12.0-3) ...
1382s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
1382s Setting up libpkgconf3:armhf (1.8.1-2) ...
1382s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
1382s Setting up libfreetype6:armhf (2.13.2+dfsg-1build2) ...
1382s Setting up fonts-dejavu-mono (2.37-8) ...
1382s Setting up libmpc3:armhf (1.3.1-1) ...
1382s Setting up libatomic1:armhf (14-20240315-1ubuntu1) ...
1382s Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ...
1382s Setting up icu-devtools (74.2-1ubuntu1) ...
1382s Setting up fonts-dejavu-core (2.37-8) ...
1382s Setting up pkgconf-bin (1.8.1-2) ...
1382s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
1382s Setting up libgfortran5:armhf (14-20240315-1ubuntu1) ...
1382s Setting up libwebp7:armhf (1.3.2-0.4build2) ...
1382s Setting up liblzma-dev:armhf (5.6.0-0.2) ...
1382s Setting up libubsan1:armhf (14-20240315-1ubuntu1) ...
1382s Setting up libpcre2-posix3:armhf (10.42-4ubuntu1) ...
1382s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
1382s Setting up libcrypt-dev:armhf (1:4.4.36-4) ...
1382s Setting up libasan8:armhf (14-20240315-1ubuntu1) ...
1382s Setting up libharfbuzz0b:armhf (8.3.0-2build1) ...
1382s Setting up libthai-data (0.1.29-2) ...
1382s Setting up libxss1:armhf (1:1.2.3-1build2) ...
1382s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1382s Setting up libisl23:armhf (0.26-3) ...
1382s Setting up libc-dev-bin (2.39-0ubuntu6) ...
1382s Setting up node-normalize.css (8.0.1-5) ...
1382s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
1382s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
1382s Setting up libcc1-0:armhf (14-20240315-1ubuntu1) ...
1382s Setting up libblas-dev:armhf (3.12.0-3) ...
1382s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
1382s Setting up dctrl-tools (2.24-3build2) ...
1382s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
1382s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
1382s Setting up libice6:armhf (2:1.0.10-1build2) ...
1382s Setting up liblapack3:armhf (3.12.0-3) ...
1382s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
1382s Setting up cpp-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1382s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ...
1383s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
1383s Setting up pkgconf:armhf (1.8.1-2) ...
1383s Setting up libthai0:armhf (0.1.29-2) ...
1383s Setting up liblapack-dev:armhf (3.12.0-3) ...
1383s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
1383s Setting up pkg-config:armhf (1.8.1-2) ...
1383s Setting up libgcc-13-dev:armhf (13.2.0-21ubuntu1) ...
1383s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
1383s Setting up libc6-dev:armhf (2.39-0ubuntu6) ...
1383s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
1383s Setting up libgfortran-13-dev:armhf (13.2.0-21ubuntu1) ...
1383s Setting up libsm6:armhf (2:1.2.3-1build2) ...
1383s Setting up libicu-dev:armhf (74.2-1ubuntu1) ...
1383s Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1383s Setting up libstdc++-13-dev:armhf (13.2.0-21ubuntu1) ...
1383s Setting up libbz2-dev:armhf (1.0.8-5ubuntu1) ...
1383s Setting up fontconfig (2.15.0-1.1ubuntu1) ...
1385s Regenerating fonts cache... done.
1385s Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ...
1385s Setting up libxft2:armhf (2.3.6-1) ...
1385s Setting up libncurses-dev:armhf (6.4+20240113-1ubuntu1) ...
1385s Setting up libpcre2-dev:armhf (10.42-4ubuntu1) ...
1385s Setting up cpp-13 (13.2.0-21ubuntu1) ...
1385s Setting up libtk8.6:armhf (8.6.14-1) ...
1385s Setting up libpango-1.0-0:armhf (1.52.1+ds-1) ...
1385s Setting up libreadline-dev:armhf (8.2-4) ...
1385s Setting up libcairo2:armhf (1.18.0-1ubuntu1) ...
1385s Setting up gcc-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1385s Setting up libxt6t64:armhf (1:1.2.1-1.2) ...
1385s Setting up gcc-13 (13.2.0-21ubuntu1) ...
1385s Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu1) ...
1385s Setting up cpp (4:13.2.0-7ubuntu1) ...
1385s Setting up libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
1385s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ...
1385s Setting up libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
1385s Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1385s Setting up g++-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1385s Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-21ubuntu1) ...
1385s Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1385s Setting up g++-13 (13.2.0-21ubuntu1) ...
1385s Setting up libpng-dev:armhf (1.6.43-3) ...
1385s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ...
1385s Setting up gcc (4:13.2.0-7ubuntu1) ...
1385s Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
1385s Setting up gfortran-13 (13.2.0-21ubuntu1) ...
1385s Setting up r-base-core (4.3.3-2build1) ...
1385s 
1385s Creating config file /etc/R/Renviron with new version
1385s Setting up r-cran-labeling (0.4.3-1) ...
1385s Setting up r-cran-lattice (0.22-5-1) ...
1385s Setting up r-cran-nlme (3.1.164-1) ...
1385s Setting up r-cran-farver (2.1.1-1) ...
1385s Setting up g++ (4:13.2.0-7ubuntu1) ...
1385s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1385s Setting up r-cran-viridislite (0.4.2-2) ...
1385s Setting up build-essential (12.10ubuntu1) ...
1385s Setting up r-cran-commonmark (1.9.1-1) ...
1385s Setting up r-cran-r6 (2.5.1-1) ...
1385s Setting up r-cran-magrittr (2.0.3-1) ...
1385s Setting up r-cran-rlang (1.1.3-1) ...
1385s Setting up r-cran-matrixstats (1.2.0-1) ...
1385s Setting up r-cran-xfun (0.41+dfsg-1) ...
1385s Setting up r-cran-withr (3.0.0+dfsg-1) ...
1385s Setting up r-cran-base64enc (0.1-3-3) ...
1385s Setting up r-cran-yaml (2.3.8-1) ...
1385s Setting up r-cran-evaluate (0.23-1) ...
1385s Setting up r-cran-highr (0.10+dfsg-1) ...
1385s Setting up r-cran-fansi (1.0.5-1) ...
1385s Setting up r-cran-mass (7.3-60.0.1-1) ...
1385s Setting up r-cran-glue (1.7.0-1) ...
1385s Setting up r-cran-cli (3.6.2-1) ...
1385s Setting up gfortran (4:13.2.0-7ubuntu1) ...
1385s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1385s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1385s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1385s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1385s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
1385s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
1385s Setting up r-cran-utf8 (1.2.4-1) ...
1385s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
1385s Setting up r-cran-markdown (1.12+dfsg-1) ...
1385s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
1385s Setting up r-cran-isoband (0.2.7-1) ...
1385s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
1385s Setting up r-cran-matrix (1.6-5-1) ...
1385s Setting up r-cran-knitr (1.45+dfsg-1) ...
1385s Setting up r-cran-mgcv (1.9-1-1) ...
1385s Setting up r-cran-vctrs (0.6.5-1) ...
1385s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
1385s Setting up r-base-dev (4.3.3-2build1) ...
1385s Setting up r-cran-munsell (0.5.0-2build1) ...
1385s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
1385s Setting up r-cran-scales (1.3.0-1) ...
1385s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
1385s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
1385s Setting up autopkgtest-satdep (0) ...
1385s Processing triggers for man-db (2.12.0-3build4) ...
1387s Processing triggers for install-info (7.1-3build1) ...
1387s Processing triggers for libc-bin (2.39-0ubuntu6) ...
1491s (Reading database ... 72245 files and directories currently installed.)
1491s Removing autopkgtest-satdep (0) ...
1525s autopkgtest [12:43:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1525s autopkgtest [12:43:25]: test pkg-r-autopkgtest: [-----------------------
1528s Test: Try to load the R library matrixStats
1528s 
1528s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
1528s Copyright (C) 2024 The R Foundation for Statistical Computing
1528s Platform: arm-unknown-linux-gnueabihf (32-bit)
1528s 
1528s R is free software and comes with ABSOLUTELY NO WARRANTY.
1528s You are welcome to redistribute it under certain conditions.
1528s Type 'license()' or 'licence()' for distribution details.
1528s 
1528s R is a collaborative project with many contributors.
1528s Type 'contributors()' for more information and
1528s 'citation()' on how to cite R or R packages in publications.
1528s 
1528s Type 'demo()' for some demos, 'help()' for on-line help, or
1528s 'help.start()' for an HTML browser interface to help.
1528s Type 'q()' to quit R.
1528s 
1528s > library('matrixStats')
1528s > 
1528s > 
1528s Other tests are currently unsupported!
1528s They will be progressively added.
1529s autopkgtest [12:43:29]: test pkg-r-autopkgtest: -----------------------]
1533s pkg-r-autopkgtest    PASS
1533s autopkgtest [12:43:33]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1536s autopkgtest [12:43:36]: @@@@@@@@@@@@@@@@@@@@ summary
1536s run-unit-test        PASS
1536s pkg-r-autopkgtest    PASS