0s autopkgtest [01:10:18]: starting date and time: 2024-03-23 01:10:18+0000
  0s autopkgtest [01:10:18]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [01:10:18]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1it9ntnk/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade r-cran-git2r --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 glibc/2.39-0ubuntu6 libgit2/1.7.2+ds-1ubuntu2' -- lxd -r lxd-armhf-10.145.243.181 lxd-armhf-10.145.243.181:autopkgtest/ubuntu/noble/armhf
 28s autopkgtest [01:10:46]: testbed dpkg architecture: armhf
 29s autopkgtest [01:10:47]: testbed apt version: 2.7.12
 29s autopkgtest [01:10:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 36s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 37s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3979 kB]
 37s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 37s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [498 kB]
 37s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB]
 37s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [641 kB]
 37s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B]
 37s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B]
 37s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B]
 37s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4077 kB]
 37s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B]
 37s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [49.1 kB]
 37s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B]
 40s Fetched 9437 kB in 2s (5377 kB/s)
 40s Reading package lists...
 49s tee: /proc/self/fd/2: Permission denied
 70s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
 70s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
 70s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
 70s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
 72s Reading package lists...
 72s Reading package lists...
 72s Building dependency tree...
 72s Reading state information...
 73s Calculating upgrade...
 73s The following packages were automatically installed and are no longer required:
 73s   linux-headers-6.8.0-11 python3-lib2to3
 73s Use 'apt autoremove' to remove them.
 73s The following packages will be REMOVED:
 73s   libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1
 73s   libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11
 73s   libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2
 73s   libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0
 73s   libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic python3-distutils
 73s The following NEW packages will be installed:
 73s   libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64
 73s   libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
 73s   libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64
 73s   libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64
 73s   libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64
 73s   libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20
 73s   linux-headers-6.8.0-20-generic xdg-user-dirs
 73s The following packages have been kept back:
 73s   multipath-tools
 73s The following packages will be upgraded:
 73s   apparmor apt apt-utils bind9-dnsutils bind9-host bind9-libs binutils
 73s   binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils bsdutils
 73s   btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon
 73s   dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base
 73s   dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp
 73s   fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0
 73s   gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv
 73s   groff-base ibverbs-providers inetutils-telnet info initramfs-tools
 73s   initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd
 73s   kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils
 73s   libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
 73s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
 73s   libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libbsd0 libc-bin libc6
 73s   libcap-ng0 libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3
 73s   libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7
 73s   libexpat1 libfdisk1 libfido2-1 libftdi1-2 libfwupd2 libgcc-s1
 73s   libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0
 73s   libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0
 73s   libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0
 73s   libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc
 73s   libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2
 73s   libnss-systemd libpam-modules libpam-modules-bin libpam-runtime
 73s   libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0
 73s   libpolkit-gobject-1-0 libprotobuf-c1 libpython3-stdlib libpython3.11-minimal
 73s   libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqmi-glib5
 73s   libqmi-proxy libqrtr-glib0 librtmp1 libsasl2-2 libsasl2-modules
 73s   libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2
 73s   libsframe1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssh-4 libstdc++6
 73s   libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl
 73s   libtirpc-common libudev1 libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1
 73s   libxml2 libxmlb2 libxmuu1 linux-headers-generic locales logsave lshw lsof
 73s   man-db mount mtr-tiny netplan-generator netplan.io openssh-client
 73s   openssh-server openssh-sftp-server openssl parted perl perl-base
 73s   perl-modules-5.38 pinentry-curses plymouth plymouth-theme-ubuntu-text psmisc
 73s   python-apt-common python3 python3-apt python3-cryptography python3-dbus
 73s   python3-gdbm python3-gi python3-lib2to3 python3-minimal python3-netplan
 73s   python3-pkg-resources python3-pyrsistent python3-setuptools
 73s   python3-typing-extensions python3-yaml python3.11 python3.11-minimal
 73s   python3.12 python3.12-minimal readline-common rsync shared-mime-info sudo
 73s   systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd tcpdump
 73s   telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 usb.ids
 73s   util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g
 74s 234 upgraded, 32 newly installed, 31 to remove and 1 not upgraded.
 74s Need to get 106 MB of archives.
 74s After this operation, 84.4 MB of additional disk space will be used.
 74s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB]
 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB]
 74s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB]
 74s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB]
 74s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.39-0ubuntu6 [2827 kB]
 74s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB]
 74s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-5.1ubuntu1 [119 kB]
 74s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-5.1ubuntu1 [321 kB]
 74s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-5.1ubuntu1 [31.4 kB]
 74s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-5.1ubuntu1 [78.6 kB]
 74s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
 74s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB]
 74s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB]
 74s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB]
 74s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB]
 74s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB]
 74s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB]
 74s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB]
 74s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB]
 74s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB]
 74s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB]
 74s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB]
 74s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B]
 74s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB]
 74s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB]
 74s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB]
 74s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB]
 74s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu7 [296 kB]
 74s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu7 [219 kB]
 74s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
 74s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB]
 74s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB]
 74s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu1 [137 kB]
 74s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB]
 74s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB]
 74s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB]
 74s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB]
 75s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB]
 75s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB]
 75s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB]
 75s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB]
 75s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB]
 75s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB]
 75s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB]
 75s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB]
 75s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B]
 75s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB]
 75s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB]
 75s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB]
 75s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB]
 75s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB]
 75s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB]
 75s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB]
 75s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB]
 75s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB]
 75s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB]
 75s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB]
 75s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B]
 75s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB]
 75s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB]
 75s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB]
 75s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB]
 75s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB]
 75s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB]
 75s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB]
 75s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB]
 75s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB]
 75s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB]
 75s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB]
 75s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB]
 75s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB]
 75s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB]
 75s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB]
 75s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB]
 75s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB]
 75s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB]
 75s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB]
 75s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB]
 75s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB]
 75s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB]
 75s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB]
 75s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB]
 75s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB]
 76s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB]
 76s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB]
 76s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB]
 76s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB]
 76s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB]
 76s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B]
 76s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
 76s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB]
 76s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu2 [17.1 kB]
 76s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB]
 76s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB]
 76s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B]
 76s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB]
 76s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB]
 76s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB]
 76s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB]
 76s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB]
 76s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB]
 76s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB]
 76s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB]
 76s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu7 [290 kB]
 76s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB]
 76s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB]
 76s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB]
 77s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB]
 77s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB]
 77s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB]
 77s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB]
 77s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB]
 77s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB]
 77s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB]
 77s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB]
 77s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B]
 77s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB]
 77s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB]
 77s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB]
 77s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB]
 77s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B]
 77s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB]
 77s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB]
 77s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB]
 77s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-1 [123 kB]
 77s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB]
 77s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-1 [4349 kB]
 77s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB]
 77s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB]
 77s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB]
 77s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.1 [19.4 kB]
 77s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.1 [216 kB]
 77s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB]
 77s Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B]
 77s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB]
 77s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB]
 77s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB]
 77s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB]
 77s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB]
 77s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB]
 77s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-3.1build1 [129 kB]
 77s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB]
 77s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB]
 77s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB]
 77s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB]
 77s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB]
 77s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.6build1 [162 kB]
 77s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB]
 77s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB]
 77s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.6build1 [19.8 kB]
 77s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
 77s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
 77s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB]
 77s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB]
 77s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB]
 77s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B]
 77s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB]
 77s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB]
 77s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB]
 77s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-3.1build1 [56.5 kB]
 77s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB]
 77s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB]
 77s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B]
 77s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
 77s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB]
 77s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB]
 77s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB]
 77s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB]
 77s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB]
 77s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB]
 77s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B]
 77s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB]
 77s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB]
 77s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB]
 77s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB]
 77s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B]
 77s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB]
 78s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB]
 78s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB]
 78s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB]
 78s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB]
 78s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB]
 78s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B]
 78s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB]
 78s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB]
 78s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB]
 78s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B]
 78s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB]
 78s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B]
 78s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB]
 78s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB]
 78s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB]
 78s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB]
 78s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB]
 78s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB]
 78s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB]
 78s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB]
 78s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB]
 78s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB]
 78s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB]
 78s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB]
 78s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.39-0ubuntu6 [530 kB]
 78s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB]
 78s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB]
 78s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB]
 78s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB]
 78s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB]
 78s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB]
 78s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB]
 78s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB]
 79s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB]
 79s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB]
 79s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB]
 79s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB]
 79s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB]
 79s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB]
 79s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-19ubuntu1 [47.7 kB]
 79s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB]
 79s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB]
 79s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB]
 79s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-5.1ubuntu1 [13.9 kB]
 79s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbsd0 armhf 0.12.1-1 [36.6 kB]
 79s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
 79s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB]
 79s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf locales all 2.39-0ubuntu6 [4232 kB]
 79s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu5 [665 kB]
 79s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu5 [385 kB]
 79s Get:228 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB]
 79s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu5 [62.4 kB]
 79s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB]
 79s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B]
 79s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB]
 79s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB]
 79s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B]
 79s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB]
 79s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB]
 79s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B]
 79s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB]
 79s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB]
 79s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B]
 79s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB]
 79s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB]
 79s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB]
 79s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB]
 79s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB]
 79s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB]
 79s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B]
 79s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB]
 79s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB]
 79s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB]
 79s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB]
 79s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB]
 79s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB]
 79s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB]
 79s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB]
 79s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB]
 79s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB]
 79s Get:258 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB]
 79s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB]
 79s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB]
 79s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB]
 79s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB]
 79s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu2 [79.3 kB]
 79s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB]
 79s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB]
 79s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB]
 80s Preconfiguring packages ...
 81s Fetched 106 MB in 6s (18.1 MB/s)
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 81s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ...
 81s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ...
 81s Setting up bsdutils (1:2.39.3-9ubuntu2) ...
 81s (Reading database ... 
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 81s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ...
 81s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
 81s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ...
 81s (Reading database ... 
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(Reading database ... 58619 files and directories currently installed.)
 81s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ...
 81s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
 81s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ...
 81s (Reading database ... 
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 81s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ...
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 81s Preparing to unpack .../libc6_2.39-0ubuntu6_armhf.deb ...
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 83s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ...
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 83s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ...
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 83s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ...
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 83s Setting up liblzma5:armhf (5.6.0-0.2) ...
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 83s Preparing to unpack .../0-kmod_31+20240202-2ubuntu4_armhf.deb ...
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 83s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty
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 83s Preparing to unpack .../4-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ...
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 83s Preparing to unpack .../5-libaudit-common_1%3a3.1.2-2.1_all.deb ...
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 84s Setting up libaudit-common (1:3.1.2-2.1) ...
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 84s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ...
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 84s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ...
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 84s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ...
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 84s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ...
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 84s Setting up libselinux1:armhf (3.5-2ubuntu1) ...
 84s dpkg: libcurl4:armhf: dependency problems, but removing anyway as you requested:
 84s  curl depends on libcurl4 (= 8.5.0-2ubuntu2).
 84s 
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 84s Removing libcurl4:armhf (8.5.0-2ubuntu2) ...
 84s Selecting previously unselected package libcurl4t64:armhf.
 84s (Reading database ... 
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 84s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_armhf.deb ...
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 84s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
 84s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested:
 84s  wget depends on libpsl5 (>= 0.16.0).
 84s  libcurl3-gnutls:armhf depends on libpsl5 (>= 0.16.0).
 84s 
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 84s Removing libpsl5:armhf (0.21.2-1build1) ...
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 84s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested:
 84s  tcpdump depends on libpcap0.8 (>= 1.9.1).
 84s 
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 84s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ...
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 84s (Reading database ... 
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 84s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu1_armhf.deb ...
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 85s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ...
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 85s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ...
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 85s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ...
 85s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ...
 85s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ...
 85s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ...
 85s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_armhf.deb ...
 85s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
 85s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
 85s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 85s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ...
 85s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 85s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
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 85s Selecting previously unselected package linux-headers-6.8.0-20.
 85s Preparing to unpack .../11-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ...
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 88s Selecting previously unselected package linux-headers-6.8.0-20-generic.
 88s Preparing to unpack .../12-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ...
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 90s Preparing to unpack .../13-linux-headers-generic_6.8.0-20.20+1_armhf.deb ...
 90s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
 90s (Reading database ... 
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 90s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ...
 90s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested:
 90s  systemd depends on libssl3 (>= 3.0.0).
 90s  libssh-4:armhf depends on libssl3 (>= 3.0.0).
 90s  libsasl2-modules:armhf depends on libssl3 (>= 3.0.0).
 90s  libsasl2-2:armhf depends on libssl3 (>= 3.0.0).
 90s  libpython3.12-minimal:armhf depends on libssl3 (>= 3.0.0).
 90s  libpython3.11-minimal:armhf depends on libssl3 (>= 3.0.0).
 90s  libnvme1 depends on libssl3 (>= 3.0.0).
 90s  libfido2-1:armhf depends on libssl3 (>= 3.0.0).
 90s  libcryptsetup12:armhf depends on libssl3 (>= 3.0.0).
 90s  dhcpcd-base depends on libssl3 (>= 3.0.0).
 90s  bind9-libs:armhf depends on libssl3 (>= 3.0.0).
 90s 
 90s Removing libssl3:armhf (3.0.10-1ubuntu4) ...
 91s Selecting previously unselected package libssl3t64:armhf.
 91s (Reading database ... 
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 91s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ...
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 91s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ...
 91s (Reading database ... 
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 91s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ...
 91s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 91s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ...
 91s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 91s Setting up libudev1:armhf (255.4-1ubuntu5) ...
 91s (Reading database ... 
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 91s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ...
 91s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
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 92s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 92s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ...
 92s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 93s Setting up libsystemd0:armhf (255.4-1ubuntu5) ...
 93s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ...
 93s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ...
 93s Setting up systemd-dev (255.4-1ubuntu5) ...
 93s Setting up systemd (255.4-1ubuntu5) ...
 93s (Reading database ... 
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 94s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ...
 94s Installing new version of config file /etc/security/namespace.init ...
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 95s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ...
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 95s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ...
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 95s Preparing to unpack .../parted_3.6-3.1build2_armhf.deb ...
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 97s Preparing to unpack .../05-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
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 97s Preparing to unpack .../06-python3.11_3.11.8-1build4_armhf.deb ...
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 97s Preparing to unpack .../09-libpython3.11-minimal_3.11.8-1build4_armhf.deb ...
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 98s Preparing to unpack .../10-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ...
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 98s Preparing to unpack .../11-libtext-iconv-perl_1.7-8build2_armhf.deb ...
 98s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ...
 98s Preparing to unpack .../12-libtext-charwidth-perl_0.04-11build2_armhf.deb ...
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 98s Preparing to unpack .../13-perl-modules-5.38_5.38.2-3.2_all.deb ...
 98s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
 99s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested:
 99s  perl depends on libperl5.38 (= 5.38.2-3).
 99s 
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 99s Removing libperl5.38:armhf (5.38.2-3) ...
 99s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested:
 99s  iproute2 depends on libdb5.3.
 99s  apt-utils depends on libdb5.3.
 99s 
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 99s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ...
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 99s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu2_armhf.deb ...
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 99s Removing libgdbm-compat4:armhf (1.23-5) ...
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100s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ...
100s Unpacking libgdbm-compat4t64:armhf (1.23-5.1) ...
100s Selecting previously unselected package libperl5.38t64:armhf.
100s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ...
100s Unpacking libperl5.38t64:armhf (5.38.2-3.2) ...
100s Preparing to unpack .../perl_5.38.2-3.2_armhf.deb ...
100s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ...
101s Preparing to unpack .../perl-base_5.38.2-3.2_armhf.deb ...
101s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ...
101s Setting up perl-base (5.38.2-3.2) ...
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101s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_armhf.deb ...
101s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ...
101s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested:
101s  libhogweed6:armhf depends on libnettle8.
101s  libgnutls30:armhf depends on libnettle8 (>= 3.9~).
101s  libcurl3-gnutls:armhf depends on libnettle8.
101s  libarchive13:armhf depends on libnettle8.
101s 
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101s Removing libnettle8:armhf (3.9.1-2) ...
101s Selecting previously unselected package libnettle8t64:armhf.
101s (Reading database ... 
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101s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ...
101s Unpacking libnettle8t64:armhf (3.9.1-2.2) ...
101s Setting up libnettle8t64:armhf (3.9.1-2.2) ...
101s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested:
101s  libgnutls30:armhf depends on libhogweed6 (>= 3.6).
101s 
101s (Reading database ... 
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101s Removing libhogweed6:armhf (3.9.1-2) ...
101s Selecting previously unselected package libhogweed6t64:armhf.
101s (Reading database ... 
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101s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ...
101s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ...
101s Setting up libhogweed6t64:armhf (3.9.1-2.2) ...
101s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested:
101s  libldap2:armhf depends on libgnutls30 (>= 3.8.2).
101s  libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2).
101s  fwupd depends on libgnutls30 (>= 3.7.3).
101s  dirmngr depends on libgnutls30 (>= 3.8.1).
101s  apt depends on libgnutls30 (>= 3.8.1).
101s 
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101s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ...
101s Selecting previously unselected package libgnutls30t64:armhf.
102s (Reading database ... 
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102s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ...
102s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
102s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
102s (Reading database ... 
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102s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ...
102s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
102s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested:
102s  libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0).
102s  fwupd depends on libcurl3-gnutls (>= 7.63.0).
102s 
102s (Reading database ... 
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102s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ...
102s Selecting previously unselected package libcurl3t64-gnutls:armhf.
102s (Reading database ... 
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102s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu7_armhf.deb ...
102s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ...
102s Preparing to unpack .../01-shared-mime-info_2.4-1build1_armhf.deb ...
102s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ...
102s Preparing to unpack .../02-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ...
102s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
102s Preparing to unpack .../03-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ...
102s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
102s Preparing to unpack .../04-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ...
102s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
102s Preparing to unpack .../05-python3-gi_3.47.0-3build1_armhf.deb ...
102s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ...
102s Preparing to unpack .../06-python3-dbus_1.3.2-5build2_armhf.deb ...
103s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ...
103s Selecting previously unselected package libnetplan1:armhf.
103s Preparing to unpack .../07-libnetplan1_1.0-1_armhf.deb ...
103s Unpacking libnetplan1:armhf (1.0-1) ...
103s Preparing to unpack .../08-python3-netplan_1.0-1_armhf.deb ...
103s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ...
103s Preparing to unpack .../09-netplan-generator_1.0-1_armhf.deb ...
103s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
103s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ...
103s Preparing to unpack .../10-initramfs-tools-bin_0.142ubuntu23_armhf.deb ...
103s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ...
103s Preparing to unpack .../11-initramfs-tools-core_0.142ubuntu23_all.deb ...
103s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ...
103s Preparing to unpack .../12-initramfs-tools_0.142ubuntu23_all.deb ...
103s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ...
103s Preparing to unpack .../13-netplan.io_1.0-1_armhf.deb ...
103s Unpacking netplan.io (1.0-1) over (0.107.1-3) ...
103s Preparing to unpack .../14-libxmlb2_0.3.15-1build1_armhf.deb ...
103s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ...
103s Preparing to unpack .../15-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ...
103s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ...
103s Preparing to unpack .../16-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ...
103s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ...
103s Preparing to unpack .../17-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ...
103s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ...
103s Preparing to unpack .../18-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ...
103s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ...
103s Preparing to unpack .../19-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ...
103s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ...
103s (Reading database ... 
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103s Removing libnetplan0:armhf (0.107.1-3) ...
103s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested:
103s  libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0).
103s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
103s  libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56).
103s  libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3).
103s  libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3).
103s  libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0).
103s  libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0).
103s  libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2).
103s  fwupd depends on libglib2.0-0 (>= 2.79.0).
103s  bolt depends on libglib2.0-0 (>= 2.56.0).
103s 
103s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ...
103s Selecting previously unselected package libglib2.0-0t64:armhf.
103s (Reading database ... 
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103s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ...
103s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
103s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm'
103s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
103s Preparing to unpack .../libfwupd2_1.9.15-1_armhf.deb ...
103s Unpacking libfwupd2:armhf (1.9.15-1) over (1.9.14-1) ...
103s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested:
103s  fwupd depends on libarchive13 (>= 3.2.1).
103s 
103s (Reading database ... 
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103s Removing libarchive13:armhf (3.7.2-1ubuntu2) ...
104s Selecting previously unselected package libarchive13t64:armhf.
104s (Reading database ... 
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104s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ...
104s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
104s Preparing to unpack .../fwupd_1.9.15-1_armhf.deb ...
104s Unpacking fwupd (1.9.15-1) over (1.9.14-1) ...
104s Preparing to unpack .../apt-utils_2.7.14_armhf.deb ...
104s Unpacking apt-utils (2.7.14) over (2.7.12) ...
104s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested:
104s  ubuntu-pro-client depends on libapt-pkg6.0 (>= 1.9~).
104s  python3-apt depends on libapt-pkg6.0 (>= 2.7.11).
104s  apt depends on libapt-pkg6.0 (>= 2.7.12).
104s 
104s (Reading database ... 
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104s Removing libapt-pkg6.0:armhf (2.7.12) ...
104s Selecting previously unselected package libapt-pkg6.0t64:armhf.
104s (Reading database ... 
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104s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ...
104s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ...
104s Setting up libapt-pkg6.0t64:armhf (2.7.14) ...
104s (Reading database ... 
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104s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ...
104s Unpacking apt (2.7.14) over (2.7.12) ...
104s Setting up apt (2.7.14) ...
105s (Reading database ... 
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105s Preparing to unpack .../ubuntu-pro-client-l10n_31.2.1_armhf.deb ...
105s Unpacking ubuntu-pro-client-l10n (31.2.1) over (31.1) ...
105s Preparing to unpack .../ubuntu-pro-client_31.2.1_armhf.deb ...
105s Unpacking ubuntu-pro-client (31.2.1) over (31.1) ...
105s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ...
105s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
105s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested:
105s  gpgv depends on libnpth0 (>= 0.90).
105s  gpgsm depends on libnpth0 (>= 0.90).
105s  gpg-agent depends on libnpth0 (>= 0.90).
105s  gpg depends on libnpth0 (>= 0.90).
105s  dirmngr depends on libnpth0 (>= 0.90).
105s 
105s (Reading database ... 
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105s Removing libnpth0:armhf (1.6-3build2) ...
105s Selecting previously unselected package libnpth0t64:armhf.
105s (Reading database ... 
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105s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ...
105s Unpacking libnpth0t64:armhf (1.6-3.1) ...
105s Setting up libnpth0t64:armhf (1.6-3.1) ...
105s (Reading database ... 
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105s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ...
105s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
105s Setting up gpgv (2.4.4-2ubuntu15) ...
106s (Reading database ... 
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106s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested:
106s  gpgconf depends on libreadline8 (>= 6.0).
106s  gawk depends on libreadline8 (>= 6.0).
106s  fdisk depends on libreadline8 (>= 6.0).
106s 
106s (Reading database ... 
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106s Removing libreadline8:armhf (8.2-3) ...
106s Selecting previously unselected package libreadline8t64:armhf.
106s (Reading database ... 
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106s Preparing to unpack .../libreadline8t64_8.2-3.1build1_armhf.deb ...
106s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
106s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
106s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
106s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
106s Unpacking libreadline8t64:armhf (8.2-3.1build1) ...
106s Setting up libreadline8t64:armhf (8.2-3.1build1) ...
106s (Reading database ... 
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106s Preparing to unpack .../00-gawk_1%3a5.2.1-2build2_armhf.deb ...
106s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ...
106s Preparing to unpack .../01-fdisk_2.39.3-9ubuntu2_armhf.deb ...
106s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
106s Preparing to unpack .../02-gpgconf_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../03-dirmngr_2.4.4-2ubuntu15_armhf.deb ...
106s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../04-gnupg_2.4.4-2ubuntu15_all.deb ...
106s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
106s Preparing to unpack .../05-python3-apt_2.7.6build1_armhf.deb ...
106s Unpacking python3-apt (2.7.6build1) over (2.7.6) ...
107s Preparing to unpack .../06-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ...
107s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ...
107s Preparing to unpack .../07-python3-yaml_6.0.1-2build1_armhf.deb ...
107s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ...
107s Preparing to unpack .../08-python-apt-common_2.7.6build1_all.deb ...
107s Unpacking python-apt-common (2.7.6build1) over (2.7.6) ...
107s Preparing to unpack .../09-python3-setuptools_68.1.2-2ubuntu1_all.deb ...
107s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ...
107s Preparing to unpack .../10-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ...
107s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ...
107s Preparing to unpack .../11-dpkg_1.22.6ubuntu4_armhf.deb ...
107s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
108s Setting up dpkg (1.22.6ubuntu4) ...
108s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ...
108s Setting up libexpat1:armhf (2.6.1-2) ...
108s Setting up python3.12-minimal (3.12.2-4build3) ...
109s (Reading database ... 
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109s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ...
109s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
109s Setting up python3-minimal (3.12.2-0ubuntu1) ...
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109s Preparing to unpack .../python3_3.12.2-0ubuntu1_armhf.deb ...
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110s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ...
110s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
110s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_armhf.deb ...
110s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
110s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ...
110s (Reading database ... 
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110s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ...
110s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
110s Preparing to unpack .../1-groff-base_1.23.0-3build1_armhf.deb ...
110s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ...
110s Preparing to unpack .../2-readline-common_8.2-3.1build1_all.deb ...
110s Unpacking readline-common (8.2-3.1build1) over (8.2-3) ...
110s Selecting previously unselected package libgpgme11t64:armhf.
110s Preparing to unpack .../3-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ...
110s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
110s Preparing to unpack .../4-libblockdev-crypto3_3.1.0-1build1_armhf.deb ...
110s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ...
110s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ...
110s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
110s Preparing to unpack .../6-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
110s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
110s Preparing to unpack .../7-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ...
110s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ...
110s Preparing to unpack .../8-libblockdev-fs3_3.1.0-1build1_armhf.deb ...
110s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ...
110s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested:
110s  btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27).
110s 
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110s Removing libreiserfscore0 (1:3.6.27-7) ...
110s Selecting previously unselected package libreiserfscore0t64.
110s (Reading database ... 
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110s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ...
110s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ...
110s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ...
110s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ...
110s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested:
110s  e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1).
110s 
110s (Reading database ... 
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110s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ...
110s Selecting previously unselected package libext2fs2t64:armhf.
110s (Reading database ... 
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110s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
110s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64'
110s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
110s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64'
110s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
110s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
110s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ...
110s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
111s (Reading database ... 
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111s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
111s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
111s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s (Reading database ... 
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111s Removing libnvme1 (1.8-2) ...
111s Selecting previously unselected package libnvme1t64.
111s (Reading database ... 
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111s Preparing to unpack .../0-libnvme1t64_1.8-3_armhf.deb ...
111s Unpacking libnvme1t64 (1.8-3) ...
111s Preparing to unpack .../1-libblockdev-part3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s Preparing to unpack .../2-libblockdev-swap3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s Preparing to unpack .../3-libblockdev3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s Preparing to unpack .../4-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ...
111s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ...
111s Preparing to unpack .../5-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ...
111s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ...
111s Preparing to unpack .../6-libbpf1_1%3a1.3.0-2build1_armhf.deb ...
111s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ...
111s Preparing to unpack .../7-iproute2_6.1.0-1ubuntu5_armhf.deb ...
111s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ...
112s (Reading database ... 
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112s Removing libelf1:armhf (0.190-1) ...
112s Selecting previously unselected package libelf1t64:armhf.
112s (Reading database ... 
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112s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ...
112s Unpacking libelf1t64:armhf (0.190-1.1build2) ...
112s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
112s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
112s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ...
112s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ...
112s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ...
112s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ...
112s (Reading database ... 
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112s Removing libtirpc3:armhf (1.3.4+ds-1build1) ...
112s Selecting previously unselected package libtirpc3t64:armhf.
112s (Reading database ... 
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112s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ...
112s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64'
112s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
112s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ...
112s Preparing to unpack .../01-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ...
112s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ...
112s Preparing to unpack .../02-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ...
112s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ...
112s Preparing to unpack .../03-libjson-glib-1.0-common_1.8.0-2build1_all.deb ...
112s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ...
112s Preparing to unpack .../04-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ...
112s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ...
112s Preparing to unpack .../05-libnghttp2-14_1.59.0-1build1_armhf.deb ...
112s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ...
112s Preparing to unpack .../06-libssh-4_0.10.6-2build1_armhf.deb ...
112s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ...
112s Preparing to unpack .../07-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ...
112s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ...
112s Preparing to unpack .../08-libgusb2_0.4.8-1build1_armhf.deb ...
112s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ...
112s Preparing to unpack .../09-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ...
112s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ...
112s Preparing to unpack .../10-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ...
112s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ...
112s Preparing to unpack .../11-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
112s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
112s Preparing to unpack .../12-libibverbs1_50.0-2build1_armhf.deb ...
112s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ...
113s Preparing to unpack .../13-libfido2-1_1.14.0-1build1_armhf.deb ...
113s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ...
113s Preparing to unpack .../14-coreutils_9.4-3ubuntu3_armhf.deb ...
113s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ...
113s Setting up coreutils (9.4-3ubuntu3) ...
113s (Reading database ... 
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113s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ...
113s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
113s Setting up util-linux (2.39.3-9ubuntu2) ...
114s fstrim.service is a disabled or a static unit not running, not starting it.
114s (Reading database ... 
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114s Preparing to unpack .../libc-bin_2.39-0ubuntu6_armhf.deb ...
114s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
114s Setting up libc-bin (2.39-0ubuntu6) ...
114s (Reading database ... 
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114s Removing libatm1:armhf (1:2.5.1-5) ...
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114s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ...
114s Unpacking file (1:5.45-3) over (1:5.45-2) ...
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115s Removing libmagic1:armhf (1:5.45-2) ...
115s (Reading database ... 
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115s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ...
115s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ...
115s Selecting previously unselected package libmagic1t64:armhf.
115s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ...
115s Unpacking libmagic1t64:armhf (1:5.45-3) ...
115s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ...
115s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
115s (Reading database ... 
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115s Removing libpng16-16:armhf (1.6.43-1) ...
115s Selecting previously unselected package libpng16-16t64:armhf.
115s (Reading database ... 
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115s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ...
115s Unpacking libpng16-16t64:armhf (1.6.43-3) ...
115s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ...
115s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
115s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ...
115s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
115s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ...
115s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
115s (Reading database ... 
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115s Removing libuv1:armhf (1.48.0-1) ...
115s Selecting previously unselected package libuv1t64:armhf.
115s (Reading database ... 
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115s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ...
115s Unpacking libuv1t64:armhf (1.48.0-1.1) ...
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115s Removing python3-distutils (3.11.5-1) ...
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115s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ...
115s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
115s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ...
115s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ...
116s Setting up libdebconfclient0:armhf (0.271ubuntu2) ...
116s (Reading database ... 
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116s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ...
116s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ...
116s Setting up libsemanage-common (3.5-1build4) ...
116s (Reading database ... 
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116s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ...
116s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ...
116s Setting up libsemanage2:armhf (3.5-1build4) ...
116s (Reading database ... 
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116s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ...
116s Unpacking install-info (7.1-3build1) over (7.1-3) ...
116s Setting up install-info (7.1-3build1) ...
116s (Reading database ... 
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116s Preparing to unpack .../00-gcc-13-base_13.2.0-19ubuntu1_armhf.deb ...
116s Unpacking gcc-13-base:armhf (13.2.0-19ubuntu1) over (13.2.0-17ubuntu2) ...
116s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
116s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
116s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ...
116s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
116s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_armhf.deb ...
116s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
116s Preparing to unpack .../04-krb5-locales_1.20.1-5.1ubuntu1_all.deb ...
116s Unpacking krb5-locales (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ...
116s Preparing to unpack .../05-libbsd0_0.12.1-1_armhf.deb ...
116s Unpacking libbsd0:armhf (0.12.1-1) over (0.11.8-1) ...
116s Preparing to unpack .../06-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
116s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
116s Preparing to unpack .../07-libslang2_2.3.3-3build1_armhf.deb ...
116s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ...
116s Preparing to unpack .../08-locales_2.39-0ubuntu6_all.deb ...
116s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
116s Preparing to unpack .../09-vim-tiny_2%3a9.1.0016-1ubuntu5_armhf.deb ...
116s Unpacking vim-tiny (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
116s Preparing to unpack .../10-vim-common_2%3a9.1.0016-1ubuntu5_all.deb ...
116s Unpacking vim-common (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
117s Selecting previously unselected package xdg-user-dirs.
117s Preparing to unpack .../11-xdg-user-dirs_0.18-1_armhf.deb ...
117s Unpacking xdg-user-dirs (0.18-1) ...
117s Preparing to unpack .../12-xxd_2%3a9.1.0016-1ubuntu5_armhf.deb ...
117s Unpacking xxd (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
117s Preparing to unpack .../13-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ...
117s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
117s Preparing to unpack .../14-ftp_20230507-2build1_all.deb ...
117s Unpacking ftp (20230507-2build1) over (20230507-2) ...
117s Preparing to unpack .../15-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ...
117s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ...
117s Preparing to unpack .../16-info_7.1-3build1_armhf.deb ...
117s Unpacking info (7.1-3build1) over (7.1-3) ...
118s Preparing to unpack .../17-libxmuu1_2%3a1.1.3-3build1_armhf.deb ...
118s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ...
118s Preparing to unpack .../18-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ...
118s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ...
118s Preparing to unpack .../19-mtr-tiny_0.95-1.1build1_armhf.deb ...
118s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ...
118s Preparing to unpack .../20-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ...
118s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
118s Preparing to unpack .../21-plymouth_24.004.60-1ubuntu6_armhf.deb ...
118s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
118s Preparing to unpack .../22-psmisc_23.7-1_armhf.deb ...
118s Unpacking psmisc (23.7-1) over (23.6-2) ...
118s Preparing to unpack .../23-telnet_0.17+2.5-3ubuntu3_all.deb ...
118s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ...
118s Preparing to unpack .../24-usb.ids_2024.03.18-1_all.deb ...
118s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ...
118s Preparing to unpack .../25-xz-utils_5.6.0-0.2_armhf.deb ...
118s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ...
118s Preparing to unpack .../26-libctf0_2.42-4ubuntu1_armhf.deb ...
118s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../27-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ...
118s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../28-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ...
118s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../29-libbinutils_2.42-4ubuntu1_armhf.deb ...
118s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../30-binutils_2.42-4ubuntu1_armhf.deb ...
118s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../31-binutils-common_2.42-4ubuntu1_armhf.deb ...
118s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../32-libsframe1_2.42-4ubuntu1_armhf.deb ...
118s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
118s Preparing to unpack .../33-bolt_0.9.6-2build1_armhf.deb ...
118s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ...
118s Preparing to unpack .../34-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ...
118s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
118s Preparing to unpack .../35-dpkg-dev_1.22.6ubuntu4_all.deb ...
118s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
119s Preparing to unpack .../36-libdpkg-perl_1.22.6ubuntu4_all.deb ...
119s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
119s Preparing to unpack .../37-gnupg-l10n_2.4.4-2ubuntu15_all.deb ...
119s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
119s Preparing to unpack .../38-ibverbs-providers_50.0-2build1_armhf.deb ...
119s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ...
119s Preparing to unpack .../39-jq_1.7.1-3_armhf.deb ...
119s Unpacking jq (1.7.1-3) over (1.7.1-2) ...
119s Preparing to unpack .../40-libjq1_1.7.1-3_armhf.deb ...
119s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ...
119s Selecting previously unselected package libatm1t64:armhf.
119s Preparing to unpack .../41-libatm1t64_1%3a2.5.1-5.1_armhf.deb ...
119s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ...
119s Preparing to unpack .../42-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ...
119s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ...
119s Preparing to unpack .../43-libftdi1-2_1.5-6build4_armhf.deb ...
119s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ...
119s Preparing to unpack .../44-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ...
119s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
119s Preparing to unpack .../45-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
119s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
119s Preparing to unpack .../46-python3-lib2to3_3.12.2-3ubuntu2_all.deb ...
119s Unpacking python3-lib2to3 (3.12.2-3ubuntu2) over (3.11.5-1) ...
119s Preparing to unpack .../47-python3-pyrsistent_0.20.0-1build1_armhf.deb ...
119s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ...
119s Preparing to unpack .../48-python3-typing-extensions_4.10.0-1_all.deb ...
119s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ...
119s Preparing to unpack .../49-kpartx_0.9.4-5ubuntu6_armhf.deb ...
119s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ...
119s Setting up pinentry-curses (1.2.1-3ubuntu4) ...
119s Setting up libtext-iconv-perl:armhf (1.7-8build2) ...
119s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ...
119s Setting up libibverbs1:armhf (50.0-2build1) ...
119s Setting up systemd-sysv (255.4-1ubuntu5) ...
119s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ...
119s Setting up libatm1t64:armhf (1:2.5.1-5.1) ...
119s Setting up libgdbm6t64:armhf (1.23-5.1) ...
119s Setting up bsdextrautils (2.39.3-9ubuntu2) ...
119s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ...
119s Setting up xdg-user-dirs (0.18-1) ...
119s Setting up ibverbs-providers:armhf (50.0-2build1) ...
119s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ...
119s Setting up libmagic-mgc (1:5.45-3) ...
119s Setting up gawk (1:5.2.1-2build2) ...
119s Setting up psmisc (23.7-1) ...
119s Setting up libjq1:armhf (1.7.1-3) ...
119s Setting up libtirpc-common (1.3.4+ds-1.1) ...
119s Setting up libbrotli1:armhf (1.1.0-2build1) ...
119s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ...
119s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ...
119s Setting up libuv1t64:armhf (1.48.0-1.1) ...
119s Setting up libmagic1t64:armhf (1:5.45-3) ...
119s Setting up binutils-common:armhf (2.42-4ubuntu1) ...
119s Setting up libpsl5t64:armhf (0.21.2-1.1) ...
119s Setting up libnghttp2-14:armhf (1.59.0-1build1) ...
119s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ...
119s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ...
119s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ...
119s Setting up krb5-locales (1.20.1-5.1ubuntu1) ...
119s Setting up file (1:5.45-3) ...
119s Setting up kmod (31+20240202-2ubuntu4) ...
120s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ...
120s Setting up locales (2.39-0ubuntu6) ...
120s Generating locales (this might take a while)...
122s   en_US.UTF-8... done
122s Generation complete.
122s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ...
122s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ...
122s Setting up xxd (2:9.1.0016-1ubuntu5) ...
122s Setting up libsframe1:armhf (2.42-4ubuntu1) ...
122s Setting up libelf1t64:armhf (0.190-1.1build2) ...
122s Setting up libkrb5support0:armhf (1.20.1-5.1ubuntu1) ...
122s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
122s Setting up eject (2.39.3-9ubuntu2) ...
122s Setting up apparmor (4.0.0-beta3-0ubuntu2) ...
122s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
122s Installing new version of config file /etc/apparmor.d/abstractions/crypto ...
122s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ...
122s Installing new version of config file /etc/apparmor.d/abstractions/openssl ...
122s Installing new version of config file /etc/apparmor.d/code ...
122s Installing new version of config file /etc/apparmor.d/firefox ...
122s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
122s 
122s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
122s 
122s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
122s 
123s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory
123s Reloading AppArmor profiles 
123s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "busybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "nautilus".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "toybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
123s 
123s Error: At least one profile failed to load
123s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
123s No schema files found: doing nothing.
123s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
123s Setting up vim-common (2:9.1.0016-1ubuntu5) ...
123s Setting up gcc-13-base:armhf (13.2.0-19ubuntu1) ...
123s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ...
123s Setting up libslang2:armhf (2.3.3-3build1) ...
123s Setting up libnvme1t64 (1.8-3) ...
123s Setting up mtr-tiny (0.95-1.1build1) ...
123s Setting up gnupg-l10n (2.4.4-2ubuntu15) ...
123s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ...
123s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ...
123s Setting up xz-utils (5.6.0-0.2) ...
123s Setting up perl-modules-5.38 (5.38.2-3.2) ...
123s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ...
123s Setting up libpng16-16t64:armhf (1.6.43-3) ...
123s Setting up systemd-timesyncd (255.4-1ubuntu5) ...
124s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ...
124s Setting up udev (255.4-1ubuntu5) ...
125s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ...
125s Setting up usb.ids (2024.03.18-1) ...
125s Setting up sudo (1.9.15p5-3ubuntu3) ...
125s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ...
125s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ...
125s Setting up libk5crypto3:armhf (1.20.1-5.1ubuntu1) ...
125s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ...
125s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ...
125s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
125s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ...
125s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ...
125s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ...
125s Setting up python-apt-common (2.7.6build1) ...
125s Setting up mount (2.39.3-9ubuntu2) ...
125s Setting up dmsetup (2:1.02.185-3ubuntu2) ...
125s Setting up uuid-runtime (2.39.3-9ubuntu2) ...
125s uuidd.service is a disabled or a static unit not running, not starting it.
126s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ...
126s Setting up groff-base (1.23.0-3build1) ...
126s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ...
126s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ...
126s Setting up kpartx (0.9.4-5ubuntu6) ...
126s Setting up jq (1.7.1-3) ...
126s Setting up gpgconf (2.4.4-2ubuntu15) ...
126s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ...
126s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ...
126s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ...
126s Setting up libjson-glib-1.0-common (1.8.0-2build1) ...
126s Setting up libkrb5-3:armhf (1.20.1-5.1ubuntu1) ...
126s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ...
126s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ...
126s Setting up libperl5.38t64:armhf (5.38.2-3.2) ...
126s Setting up tnftp (20230507-2build1) ...
126s Setting up libbinutils:armhf (2.42-4ubuntu1) ...
126s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ...
126s Setting up libfido2-1:armhf (1.14.0-1build1) ...
126s Setting up openssl (3.0.13-0ubuntu2) ...
126s Setting up libbsd0:armhf (0.12.1-1) ...
126s Setting up readline-common (8.2-3.1build1) ...
126s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ...
126s Setting up libxmuu1:armhf (2:1.1.3-3build1) ...
126s Setting up dbus-bin (1.14.10-4ubuntu2) ...
126s Setting up info (7.1-3build1) ...
126s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ...
126s Setting up gpg (2.4.4-2ubuntu15) ...
126s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ...
126s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ...
126s Setting up libbpf1:armhf (1:1.3.0-2build1) ...
126s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ...
126s Setting up rsync (3.2.7-1build1) ...
126s rsync.service is a disabled or a static unit not running, not starting it.
126s Setting up libudisks2-0:armhf (2.10.1-6) ...
126s Setting up bolt (0.9.6-2build1) ...
127s bolt.service is a disabled or a static unit not running, not starting it.
127s Setting up gnupg-utils (2.4.4-2ubuntu15) ...
127s Setting up initramfs-tools-bin (0.142ubuntu23) ...
127s Setting up libctf0:armhf (2.42-4ubuntu1) ...
127s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ...
127s Setting up python3.11-minimal (3.11.8-1build4) ...
128s Setting up tcpdump (4.99.4-3ubuntu2) ...
128s apparmor_parser: Unable to replace "tcpdump".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
128s 
128s Setting up apt-utils (2.7.14) ...
128s Setting up gpg-agent (2.4.4-2ubuntu15) ...
128s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ...
128s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ...
128s Setting up wget (1.21.4-1ubuntu2) ...
128s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ...
128s Setting up plymouth (24.004.60-1ubuntu6) ...
128s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
129s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
129s Setting up libxmlb2:armhf (0.3.15-1build1) ...
129s Setting up btrfs-progs (6.6.3-1.1build1) ...
129s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ...
129s Setting up python3.12 (3.12.2-4build3) ...
130s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ...
130s Setting up gpgsm (2.4.4-2ubuntu15) ...
130s Setting up inetutils-telnet (2:2.5-3ubuntu3) ...
130s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ...
130s update-initramfs: deferring update (trigger activated)
131s e2scrub_all.service is a disabled or a static unit not running, not starting it.
131s Setting up libparted2t64:armhf (3.6-3.1build2) ...
131s Setting up linux-headers-generic (6.8.0-20.20+1) ...
131s Setting up dbus-daemon (1.14.10-4ubuntu2) ...
131s Setting up libmbim-proxy (1.31.2-0ubuntu2) ...
131s Setting up vim-tiny (2:9.1.0016-1ubuntu5) ...
131s Setting up libnetplan1:armhf (1.0-1) ...
131s Setting up man-db (2.12.0-3build4) ...
131s Updating database of manual pages ...
132s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
132s 
132s man-db.service is a disabled or a static unit not running, not starting it.
133s Setting up libblockdev3:armhf (3.1.0-1build1) ...
133s Setting up fdisk (2.39.3-9ubuntu2) ...
133s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ...
133s Setting up libblockdev-part3:armhf (3.1.0-1build1) ...
133s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ...
133s Setting up libftdi1-2:armhf (1.5-6build4) ...
133s Setting up perl (5.38.2-3.2) ...
133s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ...
133s update-initramfs: deferring update (trigger activated)
133s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ...
133s Setting up dbus (1.14.10-4ubuntu2) ...
133s A reboot is required to replace the running dbus-daemon.
133s Please reboot the system when convenient.
133s Setting up shared-mime-info (2.4-1build1) ...
133s Setting up libgssapi-krb5-2:armhf (1.20.1-5.1ubuntu1) ...
133s Setting up ftp (20230507-2build1) ...
133s Setting up keyboxd (2.4.4-2ubuntu15) ...
133s Setting up libdpkg-perl (1.22.6ubuntu4) ...
133s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ...
133s Setting up libssh-4:armhf (0.10.6-2build1) ...
133s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ...
134s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ...
134s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
134s Setting up netplan-generator (1.0-1) ...
134s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
134s Setting up initramfs-tools-core (0.142ubuntu23) ...
134s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ...
134s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
134s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ...
134s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ...
134s Setting up systemd-resolved (255.4-1ubuntu5) ...
134s Setting up python3.11 (3.11.8-1build4) ...
135s Setting up telnet (0.17+2.5-3ubuntu3) ...
135s Setting up initramfs-tools (0.142ubuntu23) ...
135s update-initramfs: deferring update (trigger activated)
135s Setting up libcurl4t64:armhf (8.5.0-2ubuntu7) ...
135s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ...
135s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ...
135s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ...
135s Setting up iproute2 (6.1.0-1ubuntu5) ...
135s Setting up openssh-client (1:9.6p1-3ubuntu11) ...
136s Setting up libgusb2:armhf (0.4.8-1build1) ...
136s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ...
136s Setting up parted (3.6-3.1build2) ...
136s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ...
136s Setting up python3 (3.12.2-0ubuntu1) ...
136s Setting up binutils (2.42-4ubuntu1) ...
136s Setting up libjcat1:armhf (0.2.0-2build2) ...
136s Setting up dpkg-dev (1.22.6ubuntu4) ...
136s Setting up dirmngr (2.4.4-2ubuntu15) ...
136s Setting up dbus-user-session (1.14.10-4ubuntu2) ...
136s Setting up python3-cryptography (41.0.7-4build2) ...
136s Setting up python3-gi (3.47.0-3build1) ...
137s Setting up python3-typing-extensions (4.10.0-1) ...
137s Setting up lsof (4.95.0-1build2) ...
137s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ...
137s Setting up libnsl2:armhf (1.3.0-3build2) ...
137s Setting up gnupg (2.4.4-2ubuntu15) ...
137s Setting up python3-netplan (1.0-1) ...
137s Setting up curl (8.5.0-2ubuntu7) ...
137s Setting up libvolume-key1:armhf (0.3.12-7build1) ...
137s Setting up bind9-host (1:9.18.24-0ubuntu3) ...
137s Setting up python3-lib2to3 (3.12.2-3ubuntu2) ...
137s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
137s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ...
137s Setting up python3-dbus (1.3.2-5build2) ...
137s Setting up python3-setuptools (68.1.2-2ubuntu1) ...
138s Setting up gpg-wks-client (2.4.4-2ubuntu15) ...
138s Setting up openssh-server (1:9.6p1-3ubuntu11) ...
138s Replacing config file /etc/ssh/sshd_config with new version
140s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket.

141s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ...
141s Setting up python3-gdbm:armhf (3.12.2-3ubuntu2) ...
141s Setting up python3-apt (2.7.6build1) ...
141s Setting up libfwupd2:armhf (1.9.15-1) ...
141s Setting up python3-yaml (6.0.1-2build1) ...
141s Setting up libqmi-proxy (1.35.2-0ubuntu1) ...
141s Setting up netplan.io (1.0-1) ...
141s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ...
141s Setting up ubuntu-pro-client (31.2.1) ...
141s apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
141s 
143s Setting up fwupd (1.9.15-1) ...
143s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
143s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
143s fwupd.service is a disabled or a static unit not running, not starting it.
143s Setting up ubuntu-pro-client-l10n (31.2.1) ...
143s Setting up udisks2 (2.10.1-6) ...
143s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied

143s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied

143s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied

143s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied

143s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied

143s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied

143s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied

143s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied

143s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied

143s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied

143s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied

143s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied

144s Processing triggers for ufw (0.36.2-5) ...
144s Processing triggers for systemd (255.4-1ubuntu5) ...
144s Processing triggers for install-info (7.1-3build1) ...
144s Processing triggers for libc-bin (2.39-0ubuntu6) ...
144s Processing triggers for initramfs-tools (0.142ubuntu23) ...
145s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s The following packages will be REMOVED:
146s   linux-headers-6.8.0-11* python3-lib2to3*
147s 0 upgraded, 0 newly installed, 2 to remove and 1 not upgraded.
147s After this operation, 85.8 MB disk space will be freed.
147s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78592 files and directories currently installed.)
147s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ...
147s Removing python3-lib2to3 (3.12.2-3ubuntu2) ...
149s autopkgtest [01:12:47]: rebooting testbed after setup commands that affected boot
187s autopkgtest [01:13:25]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024
211s autopkgtest [01:13:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-git2r
221s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-git2r 0.33.0+dfsg-1 (dsc) [2136 B]
221s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-git2r 0.33.0+dfsg-1 (tar) [217 kB]
221s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-git2r 0.33.0+dfsg-1 (diff) [2984 B]
221s gpgv: Signature made Mon Jan  8 17:56:55 2024 UTC
221s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
221s gpgv:                issuer "tille@debian.org"
221s gpgv: Can't check signature: No public key
221s dpkg-source: warning: cannot verify inline signature for ./r-cran-git2r_0.33.0+dfsg-1.dsc: no acceptable signature found
221s autopkgtest [01:13:59]: testing package r-cran-git2r version 0.33.0+dfsg-1
223s autopkgtest [01:14:01]: build not needed
226s autopkgtest [01:14:04]: test run-unit-test: preparing testbed
235s Reading package lists...
235s Building dependency tree...
235s Reading state information...
235s Starting pkgProblemResolver with broken count: 0
236s Starting 2 pkgProblemResolver with broken count: 0
236s Done
236s The following additional packages will be installed:
236s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
236s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
236s   libgit2-1.7 libgomp1 libgraphite2-3 libharfbuzz0b libhttp-parser2.9 libice6
236s   libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0
236s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
236s   libsharpyuv0 libsm6 libssh2-1t64 libtcl8.6 libthai-data libthai0 libtiff6
236s   libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
236s   libxt6t64 r-base-core r-cran-git2r unzip x11-common xdg-utils zip
236s Suggested packages:
236s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
236s Recommended packages:
236s   r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
236s   libx11-protocol-perl x11-utils x11-xserver-utils
236s The following NEW packages will be installed:
236s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
236s   fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1
236s   libfreetype6 libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 libharfbuzz0b
236s   libhttp-parser2.9 libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3
236s   liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
236s   libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libssh2-1t64 libtcl8.6
236s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
236s   libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-git2r unzip
236s   x11-common xdg-utils zip
236s 0 upgraded, 50 newly installed, 0 to remove and 1 not upgraded.
236s Need to get 36.9 MB/36.9 MB of archives.
236s After this operation, 67.2 MB of additional disk space will be used.
236s Get:1 /tmp/autopkgtest.nkTgZk/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [708 B]
236s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfreetype6 armhf 2.13.2+dfsg-1build2 [331 kB]
237s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
237s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
237s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu1 [37.4 kB]
237s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu1 [113 kB]
237s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fontconfig armhf 2.15.0-1.1ubuntu1 [189 kB]
237s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB]
237s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB]
237s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB]
237s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B]
237s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB]
237s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcairo2 armhf 1.18.0-1ubuntu1 [482 kB]
237s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libdatrie1 armhf 0.2.13-3 [16.9 kB]
237s Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB]
237s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran5 armhf 14-20240315-1ubuntu1 [312 kB]
237s Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libhttp-parser2.9 armhf 2.9.4-6 [21.0 kB]
237s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh2-1t64 armhf 1.11.0-4.1build1 [102 kB]
237s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgit2-1.7 armhf 1.7.2+ds-1ubuntu2 [444 kB]
237s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgomp1 armhf 14-20240315-1ubuntu1 [125 kB]
237s Get:21 http://ftpmaster.internal/ubuntu noble/main armhf libgraphite2-3 armhf 1.3.14-2 [72.7 kB]
237s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libharfbuzz0b armhf 8.3.0-2build1 [446 kB]
237s Get:23 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB]
237s Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB]
237s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB]
237s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
237s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB]
237s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB]
237s Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libthai-data all 0.1.29-2 [158 kB]
237s Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libthai0 armhf 0.1.29-2 [15.1 kB]
237s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [206 kB]
237s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [36.4 kB]
237s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [24.9 kB]
237s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB]
237s Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libpaper-utils armhf 1.1.29 [8170 B]
237s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsharpyuv0 armhf 1.3.2-0.4build2 [13.6 kB]
237s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB]
237s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [903 kB]
237s Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB]
237s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libwebp7 armhf 1.3.2-0.4build2 [183 kB]
237s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu1 [178 kB]
237s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB]
237s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B]
237s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtk8.6 armhf 8.6.14-1 [681 kB]
237s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxt6t64 armhf 1:1.2.1-1.2 [145 kB]
237s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf zip armhf 3.0-13 [162 kB]
237s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf unzip armhf 6.0-28ubuntu3 [163 kB]
237s Get:48 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
237s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-core armhf 4.3.3-2build1 [26.6 MB]
238s Get:50 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-git2r armhf 0.33.0+dfsg-1 [436 kB]
239s Preconfiguring packages ...
239s Fetched 36.9 MB in 2s (20.3 MB/s)
239s Selecting previously unselected package libfreetype6:armhf.
239s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58435 files and directories currently installed.)
239s Preparing to unpack .../00-libfreetype6_2.13.2+dfsg-1build2_armhf.deb ...
239s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build2) ...
239s Selecting previously unselected package fonts-dejavu-mono.
239s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
239s Unpacking fonts-dejavu-mono (2.37-8) ...
239s Selecting previously unselected package fonts-dejavu-core.
239s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
239s Unpacking fonts-dejavu-core (2.37-8) ...
239s Selecting previously unselected package fontconfig-config.
239s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu1_armhf.deb ...
239s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ...
239s Selecting previously unselected package libfontconfig1:armhf.
239s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu1_armhf.deb ...
239s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
239s Selecting previously unselected package fontconfig.
239s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu1_armhf.deb ...
239s Unpacking fontconfig (2.15.0-1.1ubuntu1) ...
239s Selecting previously unselected package libblas3:armhf.
239s Preparing to unpack .../06-libblas3_3.12.0-3_armhf.deb ...
239s Unpacking libblas3:armhf (3.12.0-3) ...
239s Selecting previously unselected package libpixman-1-0:armhf.
239s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_armhf.deb ...
239s Unpacking libpixman-1-0:armhf (0.42.2-1) ...
239s Selecting previously unselected package libxcb-render0:armhf.
239s Preparing to unpack .../08-libxcb-render0_1.15-1_armhf.deb ...
239s Unpacking libxcb-render0:armhf (1.15-1) ...
239s Selecting previously unselected package libxcb-shm0:armhf.
239s Preparing to unpack .../09-libxcb-shm0_1.15-1_armhf.deb ...
239s Unpacking libxcb-shm0:armhf (1.15-1) ...
239s Selecting previously unselected package libxrender1:armhf.
239s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_armhf.deb ...
239s Unpacking libxrender1:armhf (1:0.9.10-1.1) ...
239s Selecting previously unselected package libcairo2:armhf.
239s Preparing to unpack .../11-libcairo2_1.18.0-1ubuntu1_armhf.deb ...
239s Unpacking libcairo2:armhf (1.18.0-1ubuntu1) ...
239s Selecting previously unselected package libdatrie1:armhf.
239s Preparing to unpack .../12-libdatrie1_0.2.13-3_armhf.deb ...
239s Unpacking libdatrie1:armhf (0.2.13-3) ...
239s Selecting previously unselected package libdeflate0:armhf.
239s Preparing to unpack .../13-libdeflate0_1.19-1_armhf.deb ...
239s Unpacking libdeflate0:armhf (1.19-1) ...
239s Selecting previously unselected package libgfortran5:armhf.
240s Preparing to unpack .../14-libgfortran5_14-20240315-1ubuntu1_armhf.deb ...
240s Unpacking libgfortran5:armhf (14-20240315-1ubuntu1) ...
240s Selecting previously unselected package libhttp-parser2.9:armhf.
240s Preparing to unpack .../15-libhttp-parser2.9_2.9.4-6_armhf.deb ...
240s Unpacking libhttp-parser2.9:armhf (2.9.4-6) ...
240s Selecting previously unselected package libssh2-1t64:armhf.
240s Preparing to unpack .../16-libssh2-1t64_1.11.0-4.1build1_armhf.deb ...
240s Unpacking libssh2-1t64:armhf (1.11.0-4.1build1) ...
240s Selecting previously unselected package libgit2-1.7:armhf.
240s Preparing to unpack .../17-libgit2-1.7_1.7.2+ds-1ubuntu2_armhf.deb ...
240s Unpacking libgit2-1.7:armhf (1.7.2+ds-1ubuntu2) ...
240s Selecting previously unselected package libgomp1:armhf.
240s Preparing to unpack .../18-libgomp1_14-20240315-1ubuntu1_armhf.deb ...
240s Unpacking libgomp1:armhf (14-20240315-1ubuntu1) ...
240s Selecting previously unselected package libgraphite2-3:armhf.
240s Preparing to unpack .../19-libgraphite2-3_1.3.14-2_armhf.deb ...
240s Unpacking libgraphite2-3:armhf (1.3.14-2) ...
240s Selecting previously unselected package libharfbuzz0b:armhf.
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242s 
242s Creating config file /etc/papersize with new version
242s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ...
242s Setting up libxrender1:armhf (1:0.9.10-1.1) ...
242s Setting up libdatrie1:armhf (0.2.13-3) ...
242s Setting up libxcb-render0:armhf (1.15-1) ...
242s Setting up unzip (6.0-28ubuntu3) ...
242s Setting up x11-common (1:7.7+23ubuntu2) ...
242s Setting up libdeflate0:armhf (1.19-1) ...
242s Setting up libxcb-shm0:armhf (1.15-1) ...
242s Setting up libpaper-utils (1.1.29) ...
242s Setting up libgomp1:armhf (14-20240315-1ubuntu1) ...
242s Setting up libjbig0:armhf (2.1-6.1ubuntu1) ...
242s Setting up zip (3.0-13) ...
242s Setting up libblas3:armhf (3.12.0-3) ...
242s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
242s Setting up libfreetype6:armhf (2.13.2+dfsg-1build2) ...
242s Setting up fonts-dejavu-mono (2.37-8) ...
242s Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ...
242s Setting up fonts-dejavu-core (2.37-8) ...
242s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
242s Setting up libgfortran5:armhf (14-20240315-1ubuntu1) ...
242s Setting up libwebp7:armhf (1.3.2-0.4build2) ...
242s Setting up libharfbuzz0b:armhf (8.3.0-2build1) ...
242s Setting up libthai-data (0.1.29-2) ...
242s Setting up libxss1:armhf (1:1.2.3-1build2) ...
242s Setting up libssh2-1t64:armhf (1.11.0-4.1build1) ...
242s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
242s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
242s Setting up libhttp-parser2.9:armhf (2.9.4-6) ...
242s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
242s Setting up libice6:armhf (2:1.0.10-1build2) ...
242s Setting up liblapack3:armhf (3.12.0-3) ...
242s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
242s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ...
242s Setting up libthai0:armhf (0.1.29-2) ...
242s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu1) ...
242s Setting up libgit2-1.7:armhf (1.7.2+ds-1ubuntu2) ...
242s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu1) ...
242s Setting up libsm6:armhf (2:1.2.3-1build2) ...
242s Setting up fontconfig (2.15.0-1.1ubuntu1) ...
244s Regenerating fonts cache... done.
244s Setting up libxft2:armhf (2.3.6-1) ...
244s Setting up libtk8.6:armhf (8.6.14-1) ...
244s Setting up libpango-1.0-0:armhf (1.52.1+ds-1) ...
244s Setting up libcairo2:armhf (1.18.0-1ubuntu1) ...
244s Setting up libxt6t64:armhf (1:1.2.1-1.2) ...
244s Setting up libpangoft2-1.0-0:armhf (1.52.1+ds-1) ...
244s Setting up libpangocairo-1.0-0:armhf (1.52.1+ds-1) ...
244s Setting up r-base-core (4.3.3-2build1) ...
245s 
245s Creating config file /etc/R/Renviron with new version
245s Setting up r-cran-git2r (0.33.0+dfsg-1) ...
245s Setting up autopkgtest-satdep (0) ...
245s Processing triggers for man-db (2.12.0-3build4) ...
245s Processing triggers for install-info (7.1-3build1) ...
245s Processing triggers for libc-bin (2.39-0ubuntu6) ...
260s (Reading database ... 60539 files and directories currently installed.)
260s Removing autopkgtest-satdep (0) ...
265s autopkgtest [01:14:43]: test run-unit-test: [-----------------------
267s BEGIN TEST add-force.R
267s 
267s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
267s Copyright (C) 2024 The R Foundation for Statistical Computing
267s Platform: arm-unknown-linux-gnueabihf (32-bit)
267s 
267s R is free software and comes with ABSOLUTELY NO WARRANTY.
267s You are welcome to redistribute it under certain conditions.
267s Type 'license()' or 'licence()' for distribution details.
267s 
267s R is a collaborative project with many contributors.
267s Type 'contributors()' for more information and
267s 'citation()' on how to cite R or R packages in publications.
267s 
267s Type 'demo()' for some demos, 'help()' for on-line help, or
267s 'help.start()' for an HTML browser interface to help.
267s Type 'q()' to quit R.
267s 
267s > ## git2r, R bindings to the libgit2 library.
267s > ## Copyright (C) 2013-2023 The git2r contributors
267s > ##
267s > ## This program is free software; you can redistribute it and/or modify
267s > ## it under the terms of the GNU General Public License, version 2,
267s > ## as published by the Free Software Foundation.
267s > ##
267s > ## git2r is distributed in the hope that it will be useful,
267s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
267s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
267s > ## GNU General Public License for more details.
267s > ##
267s > ## You should have received a copy of the GNU General Public License along
267s > ## with this program; if not, write to the Free Software Foundation, Inc.,
267s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
267s > 
267s > library(git2r)
267s > source("util/check.R")
267s > 
267s > ## For debugging
267s > sessionInfo()
267s R version 4.3.3 (2024-02-29)
267s Platform: arm-unknown-linux-gnueabihf (32-bit)
267s Running under: Ubuntu Noble Numbat (development branch)
267s 
267s Matrix products: default
267s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
267s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
267s 
267s locale:
267s [1] C
267s 
267s time zone: Etc/UTC
267s tzcode source: system (glibc)
267s 
267s attached base packages:
267s [1] stats     graphics  grDevices utils     datasets  methods   base     
267s 
267s other attached packages:
267s [1] git2r_0.33.0
267s 
267s loaded via a namespace (and not attached):
267s [1] compiler_4.3.3
267s > libgit2_version()
267s $major
267s [1] 1
267s 
267s $minor
267s [1] 7
267s 
267s $rev
267s [1] 2
267s 
267s > libgit2_features()
267s $threads
267s [1] TRUE
267s 
267s $https
267s [1] TRUE
267s 
267s $ssh
267s [1] TRUE
267s 
267s > 
267s > ## Create a directory in tempdir
267s > path <- tempfile(pattern = "git2r-")
267s > dir.create(path)
267s > 
267s > ## Initialize a repository
267s > repo <- init(path)
267s > config(repo, user.name = "Alice", user.email = "alice@example.org")
267s > 
267s > ## Create a '.gitignore' file
267s > writeLines("test.txt", file.path(path, ".gitignore"))
267s > add(repo, ".gitignore")
267s > commit(repo, "First commit message")
267s [92aaf31] 2024-03-23: First commit message
267s > 
267s > ## Create a file
267s > writeLines("Hello world!", file.path(path, "test.txt"))
267s > 
267s > ## Check status
267s > s_1 <- structure(list(staged = empty_named_list(),
267s +                       unstaged = empty_named_list(),
267s +                       untracked = empty_named_list(),
267s +                       ignored = list(ignored = "test.txt")),
267s +                  class = "git_status")
267s > stopifnot(identical(status(repo, ignored = TRUE), s_1))
267s > 
267s > ## The file is ignored and should not be added
267s > add(repo, "test.txt")
267s > stopifnot(identical(status(repo, ignored = TRUE), s_1))
267s > 
267s > ## The file is ignored but should be added with force
267s > s_2 <- structure(list(staged = list(new = "test.txt"),
267s +                       unstaged = empty_named_list(),
267s +                       untracked = empty_named_list(),
267s +                       ignored = empty_named_list()),
267s +                  class = "git_status")
267s > 
267s > add(repo, "test.txt", force = TRUE)
267s > stopifnot(identical(status(repo, ignored = TRUE), s_2))
267s > 
267s > ## Commit and check status
267s > s_3 <- structure(list(staged = empty_named_list(),
267s +                       unstaged = empty_named_list(),
267s +                       untracked = empty_named_list(),
267s +                       ignored = empty_named_list()),
267s +                  class = "git_status")
267s > 
267s > commit(repo, "Second commit message")
267s [f821d7f] 2024-03-23: Second commit message
267s > stopifnot(identical(status(repo, ignored = TRUE), s_3))
267s > 
267s > ## Cleanup
267s > unlink(path, recursive = TRUE)
267s > 
267s BEGIN TEST bare_repository.R
267s 
267s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
267s Copyright (C) 2024 The R Foundation for Statistical Computing
267s Platform: arm-unknown-linux-gnueabihf (32-bit)
267s 
267s R is free software and comes with ABSOLUTELY NO WARRANTY.
267s You are welcome to redistribute it under certain conditions.
267s Type 'license()' or 'licence()' for distribution details.
267s 
267s R is a collaborative project with many contributors.
267s Type 'contributors()' for more information and
267s 'citation()' on how to cite R or R packages in publications.
267s 
267s Type 'demo()' for some demos, 'help()' for on-line help, or
267s 'help.start()' for an HTML browser interface to help.
267s Type 'q()' to quit R.
267s 
267s > ## git2r, R bindings to the libgit2 library.
267s > ## Copyright (C) 2013-2023 The git2r contributors
267s > ##
267s > ## This program is free software; you can redistribute it and/or modify
267s > ## it under the terms of the GNU General Public License, version 2,
267s > ## as published by the Free Software Foundation.
267s > ##
267s > ## git2r is distributed in the hope that it will be useful,
267s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
267s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
267s > ## GNU General Public License for more details.
267s > ##
267s > ## You should have received a copy of the GNU General Public License along
267s > ## with this program; if not, write to the Free Software Foundation, Inc.,
267s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
267s > 
267s > library("git2r")
268s > 
268s > ## For debugging
268s > sessionInfo()
268s R version 4.3.3 (2024-02-29)
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s Running under: Ubuntu Noble Numbat (development branch)
268s 
268s Matrix products: default
268s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
268s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
268s 
268s locale:
268s [1] C
268s 
268s time zone: Etc/UTC
268s tzcode source: system (glibc)
268s 
268s attached base packages:
268s [1] stats     graphics  grDevices utils     datasets  methods   base     
268s 
268s other attached packages:
268s [1] git2r_0.33.0
268s 
268s loaded via a namespace (and not attached):
268s [1] compiler_4.3.3
268s > libgit2_version()
268s $major
268s [1] 1
268s 
268s $minor
268s [1] 7
268s 
268s $rev
268s [1] 2
268s 
268s > libgit2_features()
268s $threads
268s [1] TRUE
268s 
268s $https
268s [1] TRUE
268s 
268s $ssh
268s [1] TRUE
268s 
268s > 
268s > 
268s > ## Create a directory in tempdir
268s > path <- tempfile(pattern = "git2r-")
268s > dir.create(path)
268s > 
268s > ## Initialize a bare repository
268s > repo <- init(path, bare = TRUE)
268s > 
268s > ## Check that the state of the repository
268s > stopifnot(identical(is_bare(repo), TRUE))
268s > stopifnot(identical(is_empty(repo), TRUE))
268s > 
268s > ## Check that workdir is NULL for a bare repository
268s > stopifnot(is.null(workdir(repo)))
268s > 
268s > ## Check with missing repo argument
268s > setwd(path)
268s > stopifnot(identical(is_bare(), TRUE))
268s > 
268s > ## Cleanup
268s > unlink(path, recursive = TRUE)
268s > 
268s sh: 0: getcwd() failed: No such file or directory
268s BEGIN TEST blame.R
268s 
268s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
268s Copyright (C) 2024 The R Foundation for Statistical Computing
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s 
268s R is free software and comes with ABSOLUTELY NO WARRANTY.
268s You are welcome to redistribute it under certain conditions.
268s Type 'license()' or 'licence()' for distribution details.
268s 
268s R is a collaborative project with many contributors.
268s Type 'contributors()' for more information and
268s 'citation()' on how to cite R or R packages in publications.
268s 
268s Type 'demo()' for some demos, 'help()' for on-line help, or
268s 'help.start()' for an HTML browser interface to help.
268s Type 'q()' to quit R.
268s 
268s > ## git2r, R bindings to the libgit2 library.
268s > ## Copyright (C) 2013-2023 The git2r contributors
268s > ##
268s > ## This program is free software; you can redistribute it and/or modify
268s > ## it under the terms of the GNU General Public License, version 2,
268s > ## as published by the Free Software Foundation.
268s > ##
268s > ## git2r is distributed in the hope that it will be useful,
268s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
268s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
268s > ## GNU General Public License for more details.
268s > ##
268s > ## You should have received a copy of the GNU General Public License along
268s > ## with this program; if not, write to the Free Software Foundation, Inc.,
268s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
268s > 
268s > library(git2r)
268s > 
268s > ## For debugging
268s > sessionInfo()
268s R version 4.3.3 (2024-02-29)
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s Running under: Ubuntu Noble Numbat (development branch)
268s 
268s Matrix products: default
268s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
268s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
268s 
268s locale:
268s [1] C
268s 
268s time zone: Etc/UTC
268s tzcode source: system (glibc)
268s 
268s attached base packages:
268s [1] stats     graphics  grDevices utils     datasets  methods   base     
268s 
268s other attached packages:
268s [1] git2r_0.33.0
268s 
268s loaded via a namespace (and not attached):
268s [1] compiler_4.3.3
268s > libgit2_version()
268s $major
268s [1] 1
268s 
268s $minor
268s [1] 7
268s 
268s $rev
268s [1] 2
268s 
268s > libgit2_features()
268s $threads
268s [1] TRUE
268s 
268s $https
268s [1] TRUE
268s 
268s $ssh
268s [1] TRUE
268s 
268s > 
268s > 
268s > ## Create a directory in tempdir
268s > path <- tempfile(pattern = "git2r-")
268s > dir.create(path)
268s > 
268s > ## Initialize a repository
268s > repo <- init(path)
268s > config(repo, user.name = "Alice", user.email = "alice@example.org")
268s > 
268s > ## Create a file and commit
268s > writeLines("Hello world!", file.path(path, "test.txt"))
268s > add(repo, "test.txt")
268s > commit_1 <- commit(repo, "First commit message")
268s > 
268s > ## Create new user and change file
268s > config(repo, user.name = "Bob", user.email = "bob@example.org")
268s > writeLines(c("Hello world!", "HELLO WORLD!", "HOLA"),
268s +            file.path(path, "test.txt"))
268s > add(repo, "test.txt")
268s > commit_2 <- commit(repo, "Second commit message")
268s > 
268s > ## Check blame
268s > b <- blame(repo, "test.txt")
268s > stopifnot(identical(length(b$hunks), 2L))
268s > 
268s > ## Hunk: 1
268s > stopifnot(identical(b$hunks[[1]]$lines_in_hunk, 1L))
268s > stopifnot(identical(b$hunks[[1]]$final_commit_id, sha(commit_1)))
268s > stopifnot(identical(b$hunks[[1]]$final_start_line_number, 1L))
268s > stopifnot(identical(b$hunks[[1]]$final_signature$name, "Alice"))
268s > stopifnot(identical(b$hunks[[1]]$final_signature$email, "alice@example.org"))
268s > stopifnot(identical(b$hunks[[1]]$orig_commit_id, sha(commit_1)))
268s > stopifnot(identical(b$hunks[[1]]$orig_start_line_number, 1L))
268s > stopifnot(identical(b$hunks[[1]]$orig_signature$name, "Alice"))
268s > stopifnot(identical(b$hunks[[1]]$orig_signature$email, "alice@example.org"))
268s > stopifnot(identical(b$hunks[[1]]$orig_path, "test.txt"))
268s > stopifnot(identical(b$hunks[[1]]$boundary, TRUE))
268s > 
268s > ## Hunk: 2
268s > stopifnot(identical(b$hunks[[2]]$lines_in_hunk, 2L))
268s > stopifnot(identical(b$hunks[[2]]$final_commit_id, sha(commit_2)))
268s > stopifnot(identical(b$hunks[[2]]$final_start_line_number, 2L))
268s > stopifnot(identical(b$hunks[[2]]$final_signature$name, "Bob"))
268s > stopifnot(identical(b$hunks[[2]]$final_signature$email, "bob@example.org"))
268s > stopifnot(identical(b$hunks[[2]]$orig_commit_id, sha(commit_2)))
268s > stopifnot(identical(b$hunks[[2]]$orig_start_line_number, 2L))
268s > stopifnot(identical(b$hunks[[2]]$orig_signature$name, "Bob"))
268s > stopifnot(identical(b$hunks[[2]]$orig_signature$email, "bob@example.org"))
268s > stopifnot(identical(b$hunks[[2]]$orig_path, "test.txt"))
268s > stopifnot(identical(b$hunks[[2]]$boundary, FALSE))
268s > 
268s > ## Cleanup
268s > unlink(path, recursive = TRUE)
268s > 
268s BEGIN TEST blob.R
268s 
268s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
268s Copyright (C) 2024 The R Foundation for Statistical Computing
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s 
268s R is free software and comes with ABSOLUTELY NO WARRANTY.
268s You are welcome to redistribute it under certain conditions.
268s Type 'license()' or 'licence()' for distribution details.
268s 
268s R is a collaborative project with many contributors.
268s Type 'contributors()' for more information and
268s 'citation()' on how to cite R or R packages in publications.
268s 
268s Type 'demo()' for some demos, 'help()' for on-line help, or
268s 'help.start()' for an HTML browser interface to help.
268s Type 'q()' to quit R.
268s 
268s > ## git2r, R bindings to the libgit2 library.
268s > ## Copyright (C) 2013-2023 The git2r contributors
268s > ##
268s > ## This program is free software; you can redistribute it and/or modify
268s > ## it under the terms of the GNU General Public License, version 2,
268s > ## as published by the Free Software Foundation.
268s > ##
268s > ## git2r is distributed in the hope that it will be useful,
268s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
268s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
268s > ## GNU General Public License for more details.
268s > ##
268s > ## You should have received a copy of the GNU General Public License along
268s > ## with this program; if not, write to the Free Software Foundation, Inc.,
268s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
268s > 
268s > library(git2r)
268s > library(tools)
268s > source("util/check.R")
268s > 
268s > ## For debugging
268s > sessionInfo()
268s R version 4.3.3 (2024-02-29)
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s Running under: Ubuntu Noble Numbat (development branch)
268s 
268s Matrix products: default
268s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
268s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
268s 
268s locale:
268s [1] C
268s 
268s time zone: Etc/UTC
268s tzcode source: system (glibc)
268s 
268s attached base packages:
268s [1] tools     stats     graphics  grDevices utils     datasets  methods  
268s [8] base     
268s 
268s other attached packages:
268s [1] git2r_0.33.0
268s 
268s loaded via a namespace (and not attached):
268s [1] compiler_4.3.3
268s > libgit2_version()
268s $major
268s [1] 1
268s 
268s $minor
268s [1] 7
268s 
268s $rev
268s [1] 2
268s 
268s > libgit2_features()
268s $threads
268s [1] TRUE
268s 
268s $https
268s [1] TRUE
268s 
268s $ssh
268s [1] TRUE
268s 
268s > 
268s > 
268s > ## Create a directory in tempdir
268s > path <- tempfile(pattern = "git2r-")
268s > dir.create(path)
268s > 
268s > ## Initialize a repository
268s > repo <- init(path)
268s > config(repo, user.name = "Alice", user.email = "alice@example.org")
268s > 
268s > ## Create a file
268s > f <- file(file.path(path, "test.txt"), "wb")
268s > writeChar("Hello world!\n", f, eos = NULL)
268s > close(f)
268s > 
268s > ## add and commit
268s > add(repo, "test.txt")
268s > new_commit <- commit(repo, "Commit message")
268s > 
268s > ## Lookup blob
268s > blob <- lookup(repo, "cd0875583aabe89ee197ea133980a9085d08e497")
268s > stopifnot(isTRUE(is_blob(blob)))
268s > stopifnot(identical(sha(blob), "cd0875583aabe89ee197ea133980a9085d08e497"))
268s > stopifnot(identical(is_binary(blob), FALSE))
268s > stopifnot(identical(blob, lookup(repo, "cd0875")))
268s > stopifnot(identical(length(blob), 13L))
268s > stopifnot(identical(content(blob), "Hello world!"))
268s > stopifnot(identical(print(blob), blob))
268s blob:  cd0875583aabe89ee197ea133980a9085d08e497
268s size:  13 bytes
268s > 
268s > ## Add one more commit
268s > f <- file(file.path(path, "test.txt"), "wb")
268s > writeChar("Hello world!\nHELLO WORLD!\nHeLlO wOrLd!\n", f, eos = NULL)
268s > close(f)
268s > add(repo, "test.txt")
268s > blob <- lookup(repo, tree(commit(repo, "New commit message"))$id[1])
268s > stopifnot(identical(content(blob),
268s +                     c("Hello world!", "HELLO WORLD!", "HeLlO wOrLd!")))
268s > stopifnot(identical(rawToChar(content(blob, raw = TRUE)),
268s +                     content(blob, split = FALSE)))
268s > 
268s > ## Check content of binary file
268s > set.seed(42)
268s > x <- as.raw((sample(0:255, 1000, replace = TRUE)))
268s > writeBin(x, con = file.path(path, "test.bin"))
268s > add(repo, "test.bin")
268s > commit(repo, "Add binary file")
268s [94ce05b] 2024-03-23: Add binary file
268s > blob <- tree(last_commit(repo))["test.bin"]
268s > stopifnot(identical(content(blob), NA_character_))
268s > stopifnot(identical(x, content(blob, raw = TRUE)))
268s > 
268s > ## Hash
268s > stopifnot(identical(hash("Hello, world!\n"),
268s +                     "af5626b4a114abcb82d63db7c8082c3c4756e51b"))
268s > stopifnot(identical(hash("test content\n"),
268s +                     "d670460b4b4aece5915caf5c68d12f560a9fe3e4"))
268s > stopifnot(identical(hash(c("Hello, world!\n",
268s +                            "test content\n")),
268s +                     c("af5626b4a114abcb82d63db7c8082c3c4756e51b",
268s +                       "d670460b4b4aece5915caf5c68d12f560a9fe3e4")))
268s > stopifnot(identical(hash(c("Hello, world!\n",
268s +                            NA_character_,
268s +                            "test content\n")),
268s +                     c("af5626b4a114abcb82d63db7c8082c3c4756e51b",
268s +                       NA_character_,
268s +                       "d670460b4b4aece5915caf5c68d12f560a9fe3e4")))
268s > stopifnot(identical(hash(character(0)), character(0)))
268s > 
268s > ## Hash file
268s > test_1_txt <- file(file.path(path, "test-1.txt"), "wb")
268s > writeChar("Hello, world!\n", test_1_txt, eos = NULL)
268s > close(test_1_txt)
268s > test_2_txt <- file(file.path(path, "test-2.txt"), "wb")
268s > writeChar("test content\n", test_2_txt, eos = NULL)
268s > close(test_2_txt)
268s > stopifnot(identical(hash("Hello, world!\n"),
268s +                     hashfile(file.path(path, "test-1.txt"))))
268s > stopifnot(identical(hash("test content\n"),
268s +                     hashfile(file.path(path, "test-2.txt"))))
268s > stopifnot(identical(hash(c("Hello, world!\n",
268s +                            "test content\n")),
268s +                     hashfile(c(file.path(path, "test-1.txt"),
268s +                                file.path(path, "test-2.txt")))))
268s > assertError(hashfile(c(file.path(path, "test-1.txt"),
268s +                        NA_character_,
268s +                        file.path(path, "test-2.txt"))))
268s > stopifnot(identical(hashfile(character(0)), character(0)))
268s > 
268s > ## Create blob from disk
268s > tmp_file_1 <- tempfile()
268s > tmp_file_2 <- tempfile()
268s > f1 <- file(tmp_file_1, "wb")
268s > writeChar("Hello, world!\n", f1, eos = NULL)
268s > close(f1)
268s > f2 <- file(tmp_file_2, "wb")
268s > writeChar("test content\n", f2, eos = NULL)
268s > close(f2)
268s > blob_list_1 <- blob_create(repo, c(tmp_file_1, tmp_file_2), relative = FALSE)
268s > unlink(tmp_file_1)
268s > unlink(tmp_file_2)
268s > stopifnot(identical(sapply(blob_list_1, "[[", "sha"),
268s +                     c("af5626b4a114abcb82d63db7c8082c3c4756e51b",
268s +                       "d670460b4b4aece5915caf5c68d12f560a9fe3e4")))
268s > 
268s > ## Create blob from workdir
268s > tmp_file_3 <- file.path(path, "test-workdir-1.txt")
268s > tmp_file_4 <- file.path(path, "test-workdir-2.txt")
268s > f3 <- file(tmp_file_3, "wb")
268s > writeChar("Hello, world!\n", f3, eos = NULL)
268s > close(f3)
268s > f4 <- file(tmp_file_4, "wb")
268s > writeChar("test content\n", f4, eos = NULL)
268s > close(f4)
268s > blob_list_2 <- blob_create(repo, c("test-workdir-1.txt",
268s +                                    "test-workdir-2.txt"))
268s > stopifnot(identical(sapply(blob_list_2, "[[", "sha"),
268s +                     c("af5626b4a114abcb82d63db7c8082c3c4756e51b",
268s +                       "d670460b4b4aece5915caf5c68d12f560a9fe3e4")))
268s > 
268s > ## Test arguments
268s > check_error(assertError(.Call(git2r:::git2r_blob_content, NULL, FALSE)),
268s +             "'blob' must be an S3 class git_blob")
268s > check_error(assertError(.Call(git2r:::git2r_blob_content, 3, FALSE)),
268s +             "'blob' must be an S3 class git_blob")
268s > check_error(assertError(.Call(git2r:::git2r_blob_content, repo, FALSE)),
268s +             "'blob' must be an S3 class git_blob")
268s > 
268s > b <- blob_list_1[[1]]
268s > b$sha <- NA_character_
268s > check_error(assertError(.Call(git2r:::git2r_blob_content, b, FALSE)),
268s +             "'blob' must be an S3 class git_blob")
268s > 
268s > check_error(assertError(hashfile(NA)), "invalid 'path' argument")
268s > 
268s > ## Cleanup
268s > unlink(path, recursive = TRUE)
268s > 
268s BEGIN TEST branch.R
268s 
268s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
268s Copyright (C) 2024 The R Foundation for Statistical Computing
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s 
268s R is free software and comes with ABSOLUTELY NO WARRANTY.
268s You are welcome to redistribute it under certain conditions.
268s Type 'license()' or 'licence()' for distribution details.
268s 
268s R is a collaborative project with many contributors.
268s Type 'contributors()' for more information and
268s 'citation()' on how to cite R or R packages in publications.
268s 
268s Type 'demo()' for some demos, 'help()' for on-line help, or
268s 'help.start()' for an HTML browser interface to help.
268s Type 'q()' to quit R.
268s 
268s > ## git2r, R bindings to the libgit2 library.
268s > ## Copyright (C) 2013-2023 The git2r contributors
268s > ##
268s > ## This program is free software; you can redistribute it and/or modify
268s > ## it under the terms of the GNU General Public License, version 2,
268s > ## as published by the Free Software Foundation.
268s > ##
268s > ## git2r is distributed in the hope that it will be useful,
268s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
268s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
268s > ## GNU General Public License for more details.
268s > ##
268s > ## You should have received a copy of the GNU General Public License along
268s > ## with this program; if not, write to the Free Software Foundation, Inc.,
268s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
268s > 
268s > library(git2r)
268s > 
268s > ## For debugging
268s > sessionInfo()
268s R version 4.3.3 (2024-02-29)
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s Running under: Ubuntu Noble Numbat (development branch)
268s 
268s Matrix products: default
268s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
268s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
268s 
268s locale:
268s [1] C
268s 
268s time zone: Etc/UTC
268s tzcode source: system (glibc)
268s 
268s attached base packages:
268s [1] stats     graphics  grDevices utils     datasets  methods   base     
268s 
268s other attached packages:
268s [1] git2r_0.33.0
268s 
268s loaded via a namespace (and not attached):
268s [1] compiler_4.3.3
268s > libgit2_version()
268s $major
268s [1] 1
268s 
268s $minor
268s [1] 7
268s 
268s $rev
268s [1] 2
268s 
268s > libgit2_features()
268s $threads
268s [1] TRUE
268s 
268s $https
268s [1] TRUE
268s 
268s $ssh
268s [1] TRUE
268s 
268s > 
268s > 
268s > ## Create a directory in tempdir
268s > path <- tempfile(pattern = "git2r-")
268s > dir.create(path)
268s > 
268s > ## Initialize a repository
268s > repo <- init(path, branch = "main")
268s > config(repo, user.name = "Alice", user.email = "alice@example.org")
268s > 
268s > ## Create a file
268s > writeLines("Hello world!", file.path(path, "test.txt"))
268s > 
268s > ## add and commit
268s > add(repo, "test.txt")
268s > commit_1 <- commit(repo, "Commit message")
268s > 
268s > ## Check branch
268s > stopifnot(identical(length(branches(repo)), 1L))
268s > stopifnot(identical(is_head(branches(repo)[[1]]), TRUE))
268s > stopifnot(identical(is_local(branches(repo)[[1]]), TRUE))
268s > stopifnot(identical(branches(repo)[[1]]$name, "main"))
268s > stopifnot(identical(branches(repo)[[1]], repository_head(repo)))
268s > stopifnot(identical(branches(repo)$main, repository_head(repo)))
268s > 
268s > ## Check branch argument
268s > res <- tools::assertError(is_local(1))
268s > stopifnot(length(grep("argument 'branch' must be a 'git_branch' object",
268s +                       res[[1]]$message)) > 0)
268s > 
268s > ## Check branch name argument
268s > res <- tools::assertError(branch_set_upstream())
268s > stopifnot(length(grep("Missing argument name",
268s +                       res[[1]]$message)) > 0)
268s > 
268s > ## Print branch
268s > b <- repository_head(repo)
268s > stopifnot(identical(print(b), b))
268s [9d7142] (Local) (HEAD) main
268s > 
268s > ## Create a branch
268s > b <- branch_create(commit_1, name = "test")
268s > stopifnot(identical(b$name, "test"))
268s > stopifnot(identical(b$type, 1L))
268s > stopifnot(identical(sha(b), branch_target(b)))
268s > stopifnot(identical(length(branches(repo)), 2L))
268s > stopifnot(identical(branch_target(branches(repo)[[1]]),
268s +                     branch_target(branches(repo)[[2]])))
268s > 
268s > ## Check is_branch
268s > stopifnot(identical(is_branch(b), TRUE))
268s > stopifnot(identical(is_branch(5), FALSE))
268s > 
268s > ## Add one more commit
268s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test.txt"))
268s > add(repo, "test.txt")
268s > commit_2 <- commit(repo, "Another commit message")
268s > 
268s > ## Now the first branch should have moved on
268s > stopifnot(!identical(branch_target(branches(repo)[[1]]),
268s +                      branch_target(branches(repo)[[2]])))
268s > 
268s > ## Create a branch with the same name should fail
268s > tools::assertError(branch_create(commit_2, name = "test"))
268s > 
268s > ## Force it and check the branches are identical again
268s > b <- branch_create(commit_2, name = "test", force = TRUE)
268s > stopifnot(identical(branch_target(branches(repo)[[1]]),
268s +                     branch_target(branches(repo)[[2]])))
268s > 
268s > ## Test arguments
268s > res <- tools::assertError(.Call(git2r:::git2r_branch_delete, NULL))
268s > stopifnot(length(grep("'branch' must be an S3 class git_branch",
268s +                       res[[1]]$message)) > 0)
268s > res <- tools::assertError(.Call(git2r:::git2r_branch_delete, 3))
268s > stopifnot(length(grep("'branch' must be an S3 class git_branch",
268s +                       res[[1]]$message)) > 0)
268s > res <- tools::assertError(.Call(git2r:::git2r_branch_delete, repo))
268s > stopifnot(length(grep("'branch' must be an S3 class git_branch",
268s +                       res[[1]]$message)) > 0)
268s > b_tmp <- b
268s > b_tmp$name <- NA_character_
268s > res <- tools::assertError(.Call(git2r:::git2r_branch_delete, b_tmp))
268s > stopifnot(length(grep("'branch' must be an S3 class git_branch",
268s +                       res[[1]]$message)) > 0)
268s > b_tmp <- b
268s > b_tmp$type <- NA_integer_
268s > res <- tools::assertError(.Call(git2r:::git2r_branch_delete, b_tmp))
268s > stopifnot(length(grep("'branch' must be an S3 class git_branch",
268s +                       res[[1]]$message)) > 0)
268s > b_tmp$type <- 3L
268s > res <- tools::assertError(.Call(git2r:::git2r_branch_delete, b_tmp))
268s > stopifnot(length(grep("'branch' must be an S3 class git_branch",
268s +                       res[[1]]$message)) > 0)
268s > 
268s > ## Delete branch
268s > branch_delete(b)
268s > stopifnot(identical(length(branches(repo)), 1L))
268s > 
268s > ## Add one more commit
268s > writeLines(c("Hello world!", "HELLO WORLD!", "hello world"),
268s +            file.path(path, "test.txt"))
268s > add(repo, "test.txt")
268s > commit_3 <- commit(repo, "Another third commit message")
268s > 
268s > ## Create and test renaming of branches
268s > b_1 <- branch_create(commit_1, name = "test-1")
268s > b_2 <- branch_create(commit_2, name = "test-2")
268s > b_3 <- branch_create(commit_3, name = "test-3")
268s > stopifnot(identical(length(branches(repo)), 4L))
268s > b_1 <- branch_rename(b_1, name = "test-1-new-name")
268s > stopifnot(identical(length(branches(repo)), 4L))
268s > stopifnot(identical(b_1$name, "test-1-new-name"))
268s > tools::assertError(branch_rename(b_1, name = "test-2"))
268s > branch_rename(b_1, name = "test-2", force = TRUE)
268s > stopifnot(identical(length(branches(repo)), 3L))
268s > 
268s > ## Check branches method with missing repo argument
268s > wd <- setwd(path)
268s > stopifnot(identical(length(branches()), 3L))
268s > if (!is.null(wd))
268s +     setwd(wd)
268s > 
268s > ## Cleanup
268s > unlink(path, recursive = TRUE)
268s > 
268s BEGIN TEST bundle.R
268s 
268s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
268s Copyright (C) 2024 The R Foundation for Statistical Computing
268s Platform: arm-unknown-linux-gnueabihf (32-bit)
268s 
268s R is free software and comes with ABSOLUTELY NO WARRANTY.
268s You are welcome to redistribute it under certain conditions.
268s Type 'license()' or 'licence()' for distribution details.
268s 
268s R is a collaborative project with many contributors.
268s Type 'contributors()' for more information and
268s 'citation()' on how to cite R or R packages in publications.
268s 
268s Type 'demo()' for some demos, 'help()' for on-line help, or
268s 'help.start()' for an HTML browser interface to help.
268s Type 'q()' to quit R.
268s 
269s > ## git2r, R bindings to the libgit2 library.
269s > ## Copyright (C) 2013-2023 The git2r contributors
269s > ##
269s > ## This program is free software; you can redistribute it and/or modify
269s > ## it under the terms of the GNU General Public License, version 2,
269s > ## as published by the Free Software Foundation.
269s > ##
269s > ## git2r is distributed in the hope that it will be useful,
269s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
269s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
269s > ## GNU General Public License for more details.
269s > ##
269s > ## You should have received a copy of the GNU General Public License along
269s > ## with this program; if not, write to the Free Software Foundation, Inc.,
269s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
269s > 
269s > library("git2r")
269s > 
269s > ## For debugging
269s > sessionInfo()
269s R version 4.3.3 (2024-02-29)
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s Running under: Ubuntu Noble Numbat (development branch)
269s 
269s Matrix products: default
269s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
269s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
269s 
269s locale:
269s [1] C
269s 
269s time zone: Etc/UTC
269s tzcode source: system (glibc)
269s 
269s attached base packages:
269s [1] stats     graphics  grDevices utils     datasets  methods   base     
269s 
269s other attached packages:
269s [1] git2r_0.33.0
269s 
269s loaded via a namespace (and not attached):
269s [1] compiler_4.3.3
269s > libgit2_version()
269s $major
269s [1] 1
269s 
269s $minor
269s [1] 7
269s 
269s $rev
269s [1] 2
269s 
269s > libgit2_features()
269s $threads
269s [1] TRUE
269s 
269s $https
269s [1] TRUE
269s 
269s $ssh
269s [1] TRUE
269s 
269s > 
269s > 
269s > ## Create a directory in tempdir
269s > path <- tempfile(pattern = "git2r-")
269s > dir.create(file.path(path, "bundle", "R"), recursive = TRUE)
269s > 
269s > ## Initialize a repository
269s > repo <- init(file.path(path, "bundle"))
269s > config(repo, user.name = "Alice", user.email = "alice@example.org")
269s > 
269s > ## Create a DESCRIPTION file
269s > writeLines(c(
269s +     "package: bundle",
269s +     "Title: Bundle Git Repository",
269s +     "Description: Bundle a bare repository of the code in the 'inst' folder.",
269s +     "Version: 0.1",
269s +     "License: GPL-2",
269s +     "Authors@R: person('Alice', role = c('aut', 'cre'),",
269s +     "                  email = 'alice@example.org')"),
269s +     con = file.path(path, "bundle", "DESCRIPTION"))
269s > add(repo, file.path(path, "bundle", "DESCRIPTION"))
269s > commit(repo, "Add DESCRIPTION file")
269s [7cd0788] 2024-03-23: Add DESCRIPTION file
269s > 
269s > ## Create R file
269s > writeLines("f <- function(x, y) x+y",
269s +            con = file.path(path, "bundle", "R", "bundle.R"))
269s > add(repo, file.path(path, "bundle", "R", "bundle.R"))
269s > commit(repo, "Add R file")
269s [d914031] 2024-03-23: Add R file
269s > 
269s > ## Bundle package
269s > bundle_r_package(repo)
269s cloning into '/tmp/RtmpFKGKK3/git2r-7d17b48f6e2/bundle/inst/bundle.git'...
269s > 
269s > ## Fails if bundled package exists
269s > tools::assertError(bundle_r_package(repo))
269s > 
269s > ## Cleanup
269s > unlink(path, recursive = TRUE)
269s > 
269s BEGIN TEST checkout-named-branch.R
269s 
269s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
269s Copyright (C) 2024 The R Foundation for Statistical Computing
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s 
269s R is free software and comes with ABSOLUTELY NO WARRANTY.
269s You are welcome to redistribute it under certain conditions.
269s Type 'license()' or 'licence()' for distribution details.
269s 
269s R is a collaborative project with many contributors.
269s Type 'contributors()' for more information and
269s 'citation()' on how to cite R or R packages in publications.
269s 
269s Type 'demo()' for some demos, 'help()' for on-line help, or
269s 'help.start()' for an HTML browser interface to help.
269s Type 'q()' to quit R.
269s 
269s > ## git2r, R bindings to the libgit2 library.
269s > ## Copyright (C) 2013-2023 The git2r contributors
269s > ##
269s > ## This program is free software; you can redistribute it and/or modify
269s > ## it under the terms of the GNU General Public License, version 2,
269s > ## as published by the Free Software Foundation.
269s > ##
269s > ## git2r is distributed in the hope that it will be useful,
269s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
269s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
269s > ## GNU General Public License for more details.
269s > ##
269s > ## You should have received a copy of the GNU General Public License along
269s > ## with this program; if not, write to the Free Software Foundation, Inc.,
269s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
269s > 
269s > library(git2r)
269s > 
269s > ## For debugging
269s > sessionInfo()
269s R version 4.3.3 (2024-02-29)
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s Running under: Ubuntu Noble Numbat (development branch)
269s 
269s Matrix products: default
269s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
269s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
269s 
269s locale:
269s [1] C
269s 
269s time zone: Etc/UTC
269s tzcode source: system (glibc)
269s 
269s attached base packages:
269s [1] stats     graphics  grDevices utils     datasets  methods   base     
269s 
269s other attached packages:
269s [1] git2r_0.33.0
269s 
269s loaded via a namespace (and not attached):
269s [1] compiler_4.3.3
269s > libgit2_version()
269s $major
269s [1] 1
269s 
269s $minor
269s [1] 7
269s 
269s $rev
269s [1] 2
269s 
269s > libgit2_features()
269s $threads
269s [1] TRUE
269s 
269s $https
269s [1] TRUE
269s 
269s $ssh
269s [1] TRUE
269s 
269s > 
269s > 
269s > ## Create directories for repositories in tempdir
269s > path_bare <- tempfile(pattern = "git2r-")
269s > path_repo_1 <- tempfile(pattern = "git2r-")
269s > path_repo_2 <- tempfile(pattern = "git2r-")
269s > 
269s > dir.create(path_bare)
269s > dir.create(path_repo_1)
269s > dir.create(path_repo_2)
269s > 
269s > ## Create bare repository
269s > bare_repo <- init(path_bare, bare = TRUE)
269s > 
269s > ## Clone to repo 1
269s > repo_1 <- clone(path_bare, path_repo_1)
269s cloning into '/tmp/RtmpsEJgHR/git2r-7dd2f25dcb'...
269s > config(repo_1, user.name = "Alice", user.email = "alice@example.org")
269s > 
269s > ## Add changes to repo 1 and push to bare
269s > writeLines(
269s +     "Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
269s +     con = file.path(path_repo_1, "test.txt"))
269s > add(repo_1, "test.txt")
269s > commit(repo_1, "First commit message")
269s [16cf0a7] 2024-03-23: First commit message
269s > branch_name <- branches(repo_1)[[1]]$name
269s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
269s > 
269s > ## Test checkout branch argument
269s > tools::assertError(checkout(repo_1))
269s > tools::assertError(checkout(repo_1, c("master", "master")))
269s > tools::assertError(checkout(repo_1, "dev"))
269s > 
269s > ## Create and checkout dev branch in repo 1
269s > checkout(repo_1, "dev", create = TRUE)
269s > 
269s > ## Add changes to dev branch in repo 1 and push to bare
269s > writeLines(
269s +     c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
269s +       "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
269s +     con = file.path(path_repo_1, "test.txt"))
269s > add(repo_1, "test.txt")
269s > commit(repo_1, "Second commit message")
269s [b09bfc6] 2024-03-23: Second commit message
269s > push(repo_1, "origin", "refs/heads/dev")
269s > 
269s > ## Clone to repo 2
269s > repo_2 <- clone(path_bare, path_repo_2)
269s cloning into '/tmp/RtmpsEJgHR/git2r-7dd1f8a8271'...
269s > config(repo_2, user.name = "Bob", user.email = "bob@example.org")
269s > 
269s > stopifnot(identical(
269s +     "Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
269s +     readLines(file.path(path_repo_2, "test.txt"))))
269s > 
269s > ## Checkout dev branch
269s > checkout(repo_2, "dev")
269s > 
269s > ## Check content of file
269s > stopifnot(identical(
269s +     c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
269s +       "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
269s +     readLines(file.path(path_repo_2, "test.txt"))))
269s > 
269s > ## Checkout previous branch
269s > checkout(repo_2, "-")
269s > stopifnot(identical(repository_head(repo_2)$name, branch_name))
269s > 
269s > ## Cleanup
269s > unlink(path_bare, recursive = TRUE)
269s > unlink(path_repo_1, recursive = TRUE)
269s > unlink(path_repo_2, recursive = TRUE)
269s > 
269s BEGIN TEST checkout.R
269s 
269s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
269s Copyright (C) 2024 The R Foundation for Statistical Computing
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s 
269s R is free software and comes with ABSOLUTELY NO WARRANTY.
269s You are welcome to redistribute it under certain conditions.
269s Type 'license()' or 'licence()' for distribution details.
269s 
269s R is a collaborative project with many contributors.
269s Type 'contributors()' for more information and
269s 'citation()' on how to cite R or R packages in publications.
269s 
269s Type 'demo()' for some demos, 'help()' for on-line help, or
269s 'help.start()' for an HTML browser interface to help.
269s Type 'q()' to quit R.
269s 
269s > ## git2r, R bindings to the libgit2 library.
269s > ## Copyright (C) 2013-2023 The git2r contributors
269s > ##
269s > ## This program is free software; you can redistribute it and/or modify
269s > ## it under the terms of the GNU General Public License, version 2,
269s > ## as published by the Free Software Foundation.
269s > ##
269s > ## git2r is distributed in the hope that it will be useful,
269s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
269s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
269s > ## GNU General Public License for more details.
269s > ##
269s > ## You should have received a copy of the GNU General Public License along
269s > ## with this program; if not, write to the Free Software Foundation, Inc.,
269s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
269s > 
269s > library(git2r)
269s > 
269s > ## For debugging
269s > sessionInfo()
269s R version 4.3.3 (2024-02-29)
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s Running under: Ubuntu Noble Numbat (development branch)
269s 
269s Matrix products: default
269s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
269s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
269s 
269s locale:
269s [1] C
269s 
269s time zone: Etc/UTC
269s tzcode source: system (glibc)
269s 
269s attached base packages:
269s [1] stats     graphics  grDevices utils     datasets  methods   base     
269s 
269s other attached packages:
269s [1] git2r_0.33.0
269s 
269s loaded via a namespace (and not attached):
269s [1] compiler_4.3.3
269s > libgit2_version()
269s $major
269s [1] 1
269s 
269s $minor
269s [1] 7
269s 
269s $rev
269s [1] 2
269s 
269s > libgit2_features()
269s $threads
269s [1] TRUE
269s 
269s $https
269s [1] TRUE
269s 
269s $ssh
269s [1] TRUE
269s 
269s > 
269s > 
269s > ## Create a directory in tempdir
269s > path <- tempfile(pattern = "git2r-")
269s > dir.create(path)
269s > 
269s > ## Initialize a repository
269s > repo <- init(path, branch = "main")
269s > config(repo, user.name = "Alice", user.email = "alice@example.org")
269s > 
269s > ## Create first commit
269s > writeLines("Hello world!", file.path(path, "test.txt"))
269s > add(repo, "test.txt")
269s > commit_1 <- commit(repo, "First commit message")
269s > 
269s > ## Edit file and checkout
269s > writeLines(c("Hello world!", "Hello world!"), file.path(path, "test.txt"))
269s > status_exp_1 <- structure(list(staged = structure(list(),
269s +                                    .Names = character(0)),
269s +                                unstaged = structure(list(modified = "test.txt"),
269s +                                    .Names = "modified"),
269s +                                untracked = structure(list(),
269s +                                    .Names = character(0))),
269s +                           .Names = c("staged", "unstaged", "untracked"),
269s +                           class = "git_status")
269s > status_obs_1 <- status(repo)
269s > str(status_exp_1)
269s List of 3
269s  $ staged   : Named list()
269s  $ unstaged :List of 1
269s   ..$ modified: chr "test.txt"
269s  $ untracked: Named list()
269s  - attr(*, "class")= chr "git_status"
269s > str(status_obs_1)
269s List of 3
269s  $ staged   : Named list()
269s  $ unstaged :List of 1
269s   ..$ modified: chr "test.txt"
269s  $ untracked: Named list()
269s  - attr(*, "class")= chr "git_status"
269s > stopifnot(identical(status_obs_1, status_exp_1))
269s > checkout(repo, path = "test.txt")
269s > status_exp_2 <- structure(list(staged = structure(list(),
269s +                                    .Names = character(0)),
269s +                                unstaged = structure(list(),
269s +                                    .Names = character(0)),
269s +                                untracked = structure(list(),
269s +                                    .Names = character(0))),
269s +                           .Names = c("staged", "unstaged", "untracked"),
269s +                           class = "git_status")
269s > status_obs_2 <- status(repo)
269s > str(status_exp_2)
269s List of 3
269s  $ staged   : Named list()
269s  $ unstaged : Named list()
269s  $ untracked: Named list()
269s  - attr(*, "class")= chr "git_status"
269s > str(status_obs_2)
269s List of 3
269s  $ staged   : Named list()
269s  $ unstaged : Named list()
269s  $ untracked: Named list()
269s  - attr(*, "class")= chr "git_status"
269s > stopifnot(identical(status_obs_2, status_exp_2))
269s > 
269s > ## Create second commit
269s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test.txt"))
269s > add(repo, "test.txt")
269s > commit_2 <- commit(repo, "Second commit message")
269s > tag(repo, "commit_2", "Tag message")
269s > 
269s > ## Create third commit
269s > writeLines(c("Hello world!", "HELLO WORLD!", "HeLlO wOrLd!"),
269s +            file.path(path, "test.txt"))
269s > add(repo, "test.txt")
269s > commit_3 <- commit(repo, "Third commit message")
269s > 
269s > ## Check HEAD
269s > stopifnot(identical(is_detached(repo), FALSE))
269s > stopifnot(identical(repository_head(repo)$name, "main"))
269s > 
269s > ## Check show and summary
269s > repo
269s Local:    main /tmp/Rtmp5YCkvq/git2r-7e950f83ad5
269s Head:     [f7babac] 2024-03-23: Third commit message
269s > summary(repo)
269s Local:    main /tmp/Rtmp5YCkvq/git2r-7e950f83ad5
269s Head:     [f7babac] 2024-03-23: Third commit message
269s 
269s Branches:        1
269s Tags:            1
269s Commits:         3
269s Contributors:    1
269s Stashes:         0
269s Ignored files:   0
269s Untracked files: 0
269s Unstaged files:  0
269s Staged files:    0
269s 
269s Latest commits:
269s [f7babac] 2024-03-23: Third commit message
269s [444a183] 2024-03-23: Second commit message
269s [4bd024b] 2024-03-23: First commit message
269s > 
269s > ## Checkout first commit
269s > checkout(commit_1, TRUE)
269s > stopifnot(identical(is_detached(repo), TRUE))
269s > stopifnot(identical(repository_head(repo), commit_1))
269s > stopifnot(identical(readLines(file.path(path, "test.txt")), "Hello world!"))
269s > 
269s > ## Check show and summary
269s > repo
269s Local:    (detached) /tmp/Rtmp5YCkvq/git2r-7e950f83ad5
269s Head:     [4bd024b] 2024-03-23: First commit message
269s > summary(repo)
269s Local:    (detached) /tmp/Rtmp5YCkvq/git2r-7e950f83ad5
269s Head:     [4bd024b] 2024-03-23: First commit message
269s 
269s Branches:        1
269s Tags:            1
269s Commits:         1
269s Contributors:    1
269s Stashes:         0
269s Ignored files:   0
269s Untracked files: 0
269s Unstaged files:  0
269s Staged files:    0
269s 
269s Latest commits:
269s [4bd024b] 2024-03-23: First commit message
269s > 
269s > ## Checkout tag
269s > checkout(tags(repo)[[1]], TRUE)
269s > stopifnot(identical(is_detached(repo), TRUE))
269s > stopifnot(identical(readLines(file.path(path, "test.txt")),
269s +                     c("Hello world!", "HELLO WORLD!")))
269s > 
269s > ## Check is_detached with missing repo argument
269s > wd <- setwd(path)
269s > stopifnot(identical(is_detached(), TRUE))
269s > if (!is.null(wd))
269s +     setwd(wd)
269s > 
269s > ## Cleanup
269s > unlink(path, recursive = TRUE)
269s > 
269s BEGIN TEST checkout_branch.R
269s 
269s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
269s Copyright (C) 2024 The R Foundation for Statistical Computing
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s 
269s R is free software and comes with ABSOLUTELY NO WARRANTY.
269s You are welcome to redistribute it under certain conditions.
269s Type 'license()' or 'licence()' for distribution details.
269s 
269s R is a collaborative project with many contributors.
269s Type 'contributors()' for more information and
269s 'citation()' on how to cite R or R packages in publications.
269s 
269s Type 'demo()' for some demos, 'help()' for on-line help, or
269s 'help.start()' for an HTML browser interface to help.
269s Type 'q()' to quit R.
269s 
269s > ## git2r, R bindings to the libgit2 library.
269s > ## Copyright (C) 2013-2023 The git2r contributors
269s > ##
269s > ## This program is free software; you can redistribute it and/or modify
269s > ## it under the terms of the GNU General Public License, version 2,
269s > ## as published by the Free Software Foundation.
269s > ##
269s > ## git2r is distributed in the hope that it will be useful,
269s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
269s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
269s > ## GNU General Public License for more details.
269s > ##
269s > ## You should have received a copy of the GNU General Public License along
269s > ## with this program; if not, write to the Free Software Foundation, Inc.,
269s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
269s > 
269s > library(git2r)
269s > 
269s > ## For debugging
269s > sessionInfo()
269s R version 4.3.3 (2024-02-29)
269s Platform: arm-unknown-linux-gnueabihf (32-bit)
269s Running under: Ubuntu Noble Numbat (development branch)
269s 
269s Matrix products: default
269s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
269s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
269s 
269s locale:
269s [1] C
269s 
269s time zone: Etc/UTC
269s tzcode source: system (glibc)
269s 
269s attached base packages:
269s [1] stats     graphics  grDevices utils     datasets  methods   base     
269s 
269s other attached packages:
269s [1] git2r_0.33.0
269s 
269s loaded via a namespace (and not attached):
269s [1] compiler_4.3.3
269s > libgit2_version()
269s $major
269s [1] 1
269s 
269s $minor
269s [1] 7
269s 
269s $rev
269s [1] 2
269s 
269s > libgit2_features()
269s $threads
269s [1] TRUE
269s 
269s $https
269s [1] TRUE
269s 
269s $ssh
269s [1] TRUE
269s 
269s > 
269s > 
269s > ## Create a directory in tempdir
269s > path <- tempfile(pattern = "git2r-")
269s > dir.create(path)
269s > 
269s > ## Initialize a repository
269s > repo <- init(path, branch = "main")
269s > config(repo, user.name = "Alice", user.email = "alice@example.org")
269s > 
269s > ## Create first commit
269s > writeLines("Hello world!", file.path(path, "test-1.txt"))
269s > add(repo, "test-1.txt")
269s > commit(repo, "First commit message")
269s [a81d60f] 2024-03-23: First commit message
269s > 
269s > ## Create and checkout dev branch in repo
269s > checkout(repo, "dev", create = TRUE)
270s > 
270s > ## Create second commit
270s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test-2.txt"))
270s > add(repo, "test-2.txt")
270s > commit(repo, "Second commit message")
270s [1863cd4] 2024-03-23: Second commit message
270s > 
270s > ## Check files
270s > stopifnot(identical(list.files(path), c("test-1.txt", "test-2.txt")))
270s > 
270s > ## Checkout master branch and check files
270s > checkout(repo, "main")
270s > stopifnot(identical(list.files(path), "test-1.txt"))
270s > 
270s > ## Cleanup
270s > unlink(path, recursive = TRUE)
270s > 
270s > ## Checkout branch in empty repository
270s > 
270s > ## Create a directory in tempdir
270s > path <- tempfile(pattern = "git2r-")
270s > dir.create(path)
270s > 
270s > ## Initialize a repository
270s > repo <- init(path)
270s > config(repo, user.name = "Alice", user.email = "alice@example.org")
270s > 
270s > ## Create and checkout dev branch in repo
270s > checkout(repo, "dev", create = TRUE)
270s > 
270s > ## Create first commit
270s > writeLines("Hello world!", file.path(path, "test-1.txt"))
270s > add(repo, "test-1.txt")
270s > commit(repo, "First commit message")
270s [a81d60f] 2024-03-23: First commit message
270s > 
270s > stopifnot(identical(length(branches(repo)), 1L))
270s > stopifnot(identical(branches(repo)[[1]]$name, "dev"))
270s > 
270s > ## Cleanup
270s > unlink(path, recursive = TRUE)
270s > 
270s BEGIN TEST checkout_commit.R
270s 
270s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
270s Copyright (C) 2024 The R Foundation for Statistical Computing
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s 
270s R is free software and comes with ABSOLUTELY NO WARRANTY.
270s You are welcome to redistribute it under certain conditions.
270s Type 'license()' or 'licence()' for distribution details.
270s 
270s R is a collaborative project with many contributors.
270s Type 'contributors()' for more information and
270s 'citation()' on how to cite R or R packages in publications.
270s 
270s Type 'demo()' for some demos, 'help()' for on-line help, or
270s 'help.start()' for an HTML browser interface to help.
270s Type 'q()' to quit R.
270s 
270s > ## git2r, R bindings to the libgit2 library.
270s > ## Copyright (C) 2013-2023 The git2r contributors
270s > ##
270s > ## This program is free software; you can redistribute it and/or modify
270s > ## it under the terms of the GNU General Public License, version 2,
270s > ## as published by the Free Software Foundation.
270s > ##
270s > ## git2r is distributed in the hope that it will be useful,
270s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
270s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
270s > ## GNU General Public License for more details.
270s > ##
270s > ## You should have received a copy of the GNU General Public License along
270s > ## with this program; if not, write to the Free Software Foundation, Inc.,
270s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
270s > 
270s > library("git2r")
270s > 
270s > ## For debugging
270s > sessionInfo()
270s R version 4.3.3 (2024-02-29)
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s Running under: Ubuntu Noble Numbat (development branch)
270s 
270s Matrix products: default
270s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
270s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
270s 
270s locale:
270s [1] C
270s 
270s time zone: Etc/UTC
270s tzcode source: system (glibc)
270s 
270s attached base packages:
270s [1] stats     graphics  grDevices utils     datasets  methods   base     
270s 
270s other attached packages:
270s [1] git2r_0.33.0
270s 
270s loaded via a namespace (and not attached):
270s [1] compiler_4.3.3
270s > libgit2_version()
270s $major
270s [1] 1
270s 
270s $minor
270s [1] 7
270s 
270s $rev
270s [1] 2
270s 
270s > libgit2_features()
270s $threads
270s [1] TRUE
270s 
270s $https
270s [1] TRUE
270s 
270s $ssh
270s [1] TRUE
270s 
270s > 
270s > 
270s > ## Create a directory in tempdir
270s > path <- tempfile(pattern = "git2r-")
270s > dir.create(path)
270s > 
270s > ## Initialize a repository
270s > repo <- init(path)
270s > config(repo, user.name = "Alice", user.email = "alice@example.org")
270s > 
270s > ## Create first commit
270s > writeLines("Hello world!", file.path(path, "test-1.txt"))
270s > add(repo, "test-1.txt")
270s > commit_1 <- commit(repo, "First commit message")
270s > 
270s > ## Create and checkout dev branch in repo
270s > checkout(repo, "dev", create = TRUE)
270s > 
270s > ## Create second commit
270s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test-2.txt"))
270s > add(repo, "test-2.txt")
270s > commit_2 <- commit(repo, "Second commit message")
270s > 
270s > ## Check files
270s > stopifnot(identical(list.files(path), c("test-1.txt", "test-2.txt")))
270s > 
270s > ## Checkout commit_1 and check files
270s > checkout(commit_1)
270s > stopifnot(identical(list.files(path), "test-1.txt"))
270s > 
270s > ## Checkout commit_2 and check files
270s > checkout(commit_2)
270s > stopifnot(identical(list.files(path), c("test-1.txt", "test-2.txt")))
270s > 
270s > ## Cleanup
270s > unlink(path, recursive = TRUE)
270s > 
270s BEGIN TEST checkout_tag.R
270s 
270s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
270s Copyright (C) 2024 The R Foundation for Statistical Computing
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s 
270s R is free software and comes with ABSOLUTELY NO WARRANTY.
270s You are welcome to redistribute it under certain conditions.
270s Type 'license()' or 'licence()' for distribution details.
270s 
270s R is a collaborative project with many contributors.
270s Type 'contributors()' for more information and
270s 'citation()' on how to cite R or R packages in publications.
270s 
270s Type 'demo()' for some demos, 'help()' for on-line help, or
270s 'help.start()' for an HTML browser interface to help.
270s Type 'q()' to quit R.
270s 
270s > ## git2r, R bindings to the libgit2 library.
270s > ## Copyright (C) 2013-2023 The git2r contributors
270s > ##
270s > ## This program is free software; you can redistribute it and/or modify
270s > ## it under the terms of the GNU General Public License, version 2,
270s > ## as published by the Free Software Foundation.
270s > ##
270s > ## git2r is distributed in the hope that it will be useful,
270s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
270s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
270s > ## GNU General Public License for more details.
270s > ##
270s > ## You should have received a copy of the GNU General Public License along
270s > ## with this program; if not, write to the Free Software Foundation, Inc.,
270s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
270s > 
270s > library(git2r)
270s > 
270s > ## For debugging
270s > sessionInfo()
270s R version 4.3.3 (2024-02-29)
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s Running under: Ubuntu Noble Numbat (development branch)
270s 
270s Matrix products: default
270s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
270s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
270s 
270s locale:
270s [1] C
270s 
270s time zone: Etc/UTC
270s tzcode source: system (glibc)
270s 
270s attached base packages:
270s [1] stats     graphics  grDevices utils     datasets  methods   base     
270s 
270s other attached packages:
270s [1] git2r_0.33.0
270s 
270s loaded via a namespace (and not attached):
270s [1] compiler_4.3.3
270s > libgit2_version()
270s $major
270s [1] 1
270s 
270s $minor
270s [1] 7
270s 
270s $rev
270s [1] 2
270s 
270s > libgit2_features()
270s $threads
270s [1] TRUE
270s 
270s $https
270s [1] TRUE
270s 
270s $ssh
270s [1] TRUE
270s 
270s > 
270s > 
270s > ## Create a directory in tempdir
270s > path <- tempfile(pattern = "git2r-")
270s > dir.create(path)
270s > 
270s > ## Initialize a repository
270s > repo <- init(path)
270s > config(repo, user.name = "Alice", user.email = "alice@example.org")
270s > 
270s > ## Create first commit
270s > writeLines("Hello world!", file.path(path, "test-1.txt"))
270s > add(repo, "test-1.txt")
270s > commit_1 <- commit(repo, "First commit message")
270s > tag_1 <- tag(repo, "Tag1", "First tag message")
270s > 
270s > ## Create and checkout dev branch in repo
270s > checkout(repo, "dev", create = TRUE)
270s > 
270s > ## Create second commit
270s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test-2.txt"))
270s > add(repo, "test-2.txt")
270s > commit_2 <- commit(repo, "Second commit message")
270s > tag_2 <- tag(repo, "Tag2", "Second tag message")
270s > 
270s > ## Check files
270s > stopifnot(identical(list.files(path), c("test-1.txt", "test-2.txt")))
270s > 
270s > ## Checkout tag_1 and check files
270s > checkout(tag_1)
270s > stopifnot(identical(list.files(path), "test-1.txt"))
270s > 
270s > ## Checkout tag_2 and check files
270s > checkout(tag_2)
270s > stopifnot(identical(list.files(path), c("test-1.txt", "test-2.txt")))
270s > 
270s > ## Checkout "Tag1" and check files
270s > checkout(repo, "Tag1")
270s > stopifnot(identical(list.files(path), "test-1.txt"))
270s > 
270s > ## Cleanup
270s > unlink(path, recursive = TRUE)
270s > 
270s BEGIN TEST clone_bare.R
270s 
270s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
270s Copyright (C) 2024 The R Foundation for Statistical Computing
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s 
270s R is free software and comes with ABSOLUTELY NO WARRANTY.
270s You are welcome to redistribute it under certain conditions.
270s Type 'license()' or 'licence()' for distribution details.
270s 
270s R is a collaborative project with many contributors.
270s Type 'contributors()' for more information and
270s 'citation()' on how to cite R or R packages in publications.
270s 
270s Type 'demo()' for some demos, 'help()' for on-line help, or
270s 'help.start()' for an HTML browser interface to help.
270s Type 'q()' to quit R.
270s 
270s > ## git2r, R bindings to the libgit2 library.
270s > ## Copyright (C) 2013-2023 The git2r contributors
270s > ##
270s > ## This program is free software; you can redistribute it and/or modify
270s > ## it under the terms of the GNU General Public License, version 2,
270s > ## as published by the Free Software Foundation.
270s > ##
270s > ## git2r is distributed in the hope that it will be useful,
270s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
270s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
270s > ## GNU General Public License for more details.
270s > ##
270s > ## You should have received a copy of the GNU General Public License along
270s > ## with this program; if not, write to the Free Software Foundation, Inc.,
270s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
270s > 
270s > library("git2r")
270s > 
270s > ## For debugging
270s > sessionInfo()
270s R version 4.3.3 (2024-02-29)
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s Running under: Ubuntu Noble Numbat (development branch)
270s 
270s Matrix products: default
270s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
270s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
270s 
270s locale:
270s [1] C
270s 
270s time zone: Etc/UTC
270s tzcode source: system (glibc)
270s 
270s attached base packages:
270s [1] stats     graphics  grDevices utils     datasets  methods   base     
270s 
270s other attached packages:
270s [1] git2r_0.33.0
270s 
270s loaded via a namespace (and not attached):
270s [1] compiler_4.3.3
270s > libgit2_version()
270s $major
270s [1] 1
270s 
270s $minor
270s [1] 7
270s 
270s $rev
270s [1] 2
270s 
270s > libgit2_features()
270s $threads
270s [1] TRUE
270s 
270s $https
270s [1] TRUE
270s 
270s $ssh
270s [1] TRUE
270s 
270s > 
270s > 
270s > ## Create 2 directories in tempdir
270s > path_bare <- tempfile(pattern = "git2r-")
270s > path_repo <- tempfile(pattern = "git2r-")
270s > dir.create(path_bare)
270s > dir.create(path_repo)
270s > 
270s > ## Initialize a repository
270s > repo <- init(path_repo)
270s > config(repo, user.name = "Alice", user.email = "alice@example.org")
270s > 
270s > ## Add commit to repo
270s > writeLines("Hello world", con = file.path(path_repo, "test.txt"))
270s > add(repo, "test.txt")
270s > commit_1 <- commit(repo, "Commit message")
270s > 
270s > ## Check bare argument
270s > tools::assertError(clone(path_repo, path_bare, bare = c(TRUE, TRUE)))
270s > tools::assertError(clone(path_repo, path_bare, bare = 1))
270s > tools::assertError(clone(path_repo, path_bare, bare = 1L))
270s > tools::assertError(clone(path_repo, path_bare, bare = "test"))
270s > 
270s > ## Clone repo to bare repository
270s > bare_repo <- clone(path_repo, path_bare, bare = TRUE)
270s cloning into '/tmp/RtmpTs08v7/git2r-81966a27c12'...
270s > 
270s > ## Check the repositores
270s > stopifnot(identical(is_bare(bare_repo), TRUE))
270s > stopifnot(identical(is_bare(repo), FALSE))
270s > 
270s > ## Check result in bare repository
270s > stopifnot(identical(length(commits(bare_repo)), 1L))
270s > bare_commit_1 <- commits(bare_repo)[[1]]
270s > stopifnot(identical(sha(commit_1), sha(bare_commit_1)))
270s > stopifnot(identical(commit_1$author, bare_commit_1$author))
270s > stopifnot(identical(commit_1$committer, bare_commit_1$committer))
270s > stopifnot(identical(commit_1$summary, bare_commit_1$summary))
270s > stopifnot(identical(commit_1$message, bare_commit_1$message))
270s > stopifnot(!identical(commit_1$repo, bare_commit_1$repo))
270s > 
270s > ## Cleanup
270s > unlink(path_bare, recursive = TRUE)
270s > unlink(path_repo, recursive = TRUE)
270s > 
270s BEGIN TEST clone_branch.R
270s 
270s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
270s Copyright (C) 2024 The R Foundation for Statistical Computing
270s Platform: arm-unknown-linux-gnueabihf (32-bit)
270s 
270s R is free software and comes with ABSOLUTELY NO WARRANTY.
270s You are welcome to redistribute it under certain conditions.
270s Type 'license()' or 'licence()' for distribution details.
270s 
270s R is a collaborative project with many contributors.
270s Type 'contributors()' for more information and
270s 'citation()' on how to cite R or R packages in publications.
270s 
270s Type 'demo()' for some demos, 'help()' for on-line help, or
270s 'help.start()' for an HTML browser interface to help.
270s Type 'q()' to quit R.
270s 
270s > ## git2r, R bindings to the libgit2 library.
270s > ## Copyright (C) 2013-2023 The git2r contributors
270s > ##
270s > ## This program is free software; you can redistribute it and/or modify
270s > ## it under the terms of the GNU General Public License, version 2,
270s > ## as published by the Free Software Foundation.
270s > ##
270s > ## git2r is distributed in the hope that it will be useful,
270s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
270s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
270s > ## GNU General Public License for more details.
270s > ##
270s > ## You should have received a copy of the GNU General Public License along
270s > ## with this program; if not, write to the Free Software Foundation, Inc.,
270s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
270s > 
270s > library(git2r)
271s > 
271s > ## For debugging
271s > sessionInfo()
271s R version 4.3.3 (2024-02-29)
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s Running under: Ubuntu Noble Numbat (development branch)
271s 
271s Matrix products: default
271s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
271s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
271s 
271s locale:
271s [1] C
271s 
271s time zone: Etc/UTC
271s tzcode source: system (glibc)
271s 
271s attached base packages:
271s [1] stats     graphics  grDevices utils     datasets  methods   base     
271s 
271s other attached packages:
271s [1] git2r_0.33.0
271s 
271s loaded via a namespace (and not attached):
271s [1] compiler_4.3.3
271s > libgit2_version()
271s $major
271s [1] 1
271s 
271s $minor
271s [1] 7
271s 
271s $rev
271s [1] 2
271s 
271s > libgit2_features()
271s $threads
271s [1] TRUE
271s 
271s $https
271s [1] TRUE
271s 
271s $ssh
271s [1] TRUE
271s 
271s > 
271s > 
271s > ## Create directories for repositories in tempdir
271s > path_bare <- tempfile(pattern = "git2r-")
271s > path_repo_1 <- tempfile(pattern = "git2r-")
271s > path_repo_2 <- tempfile(pattern = "git2r-")
271s > 
271s > dir.create(path_bare)
271s > dir.create(path_repo_1)
271s > dir.create(path_repo_2)
271s > 
271s > ## Create bare repository
271s > bare_repo <- init(path_bare, bare = TRUE)
271s > 
271s > ## Clone to repo 1
271s > repo_1 <- clone(path_bare, path_repo_1)
271s cloning into '/tmp/RtmpoHNYo8/git2r-82575d02bc0'...
271s > config(repo_1, user.name = "Alice", user.email = "alice@example.org")
271s > 
271s > ## Add changes to repo 1
271s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
271s +            con = file.path(path_repo_1, "test-1.txt"))
271s > add(repo_1, "test-1.txt")
271s > commit_1 <- commit(repo_1, "First commit message")
271s > branch_name <- branches(repo_1)[[1]]$name
271s > 
271s > ## Create 'dev' branch
271s > checkout(branch_create(commit_1, name = "dev"))
271s > 
271s > ## Add more changes to repo 1
271s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
271s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
271s +            con = file.path(path_repo_1, "test-1.txt"))
271s > add(repo_1, "test-1.txt")
271s > commit(repo_1, "Second commit message")
271s [9eb1933] 2024-03-23: Second commit message
271s > 
271s > ## Add more changes to repo 1
271s > writeLines(
271s +     c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
271s +       "eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad",
271s +       "minim veniam, quis nostrud exercitation ullamco laboris nisi ut"),
271s +     con = file.path(path_repo_1, "test-1.txt"))
271s > add(repo_1, "test-1.txt")
271s > commit(repo_1, "Third commit message")
271s [7384691] 2024-03-23: Third commit message
271s > 
271s > ## Push to bare
271s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
271s > push(repo_1, "origin", "refs/heads/dev")
271s > 
271s > ## Print branch
271s > branches(repo_1)[[paste0("origin/", branch_name)]]
271s [ab53fc] (origin @ /tmp/RtmpoHNYo8/git2r-8252601aff9) master
271s > 
271s > ## Clone to repo 2
271s > repo_2 <- clone(url = path_bare, local_path = path_repo_2, branch = "dev")
271s cloning into '/tmp/RtmpoHNYo8/git2r-8251fb9a8c6'...
271s > config(repo_2, user.name = "Bob", user.email = "bob@example.org")
271s > 
271s > ## Check branch and commits
271s > stopifnot(identical(length(commits(repo_2)), 3L))
271s > stopifnot(identical(repository_head(repo_2)$name, "dev"))
271s > 
271s > ## Cleanup
271s > unlink(path_bare, recursive = TRUE)
271s > unlink(path_repo_1, recursive = TRUE)
271s > unlink(path_repo_2, recursive = TRUE)
271s > 
271s BEGIN TEST clone_checkout.R
271s 
271s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
271s Copyright (C) 2024 The R Foundation for Statistical Computing
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s 
271s R is free software and comes with ABSOLUTELY NO WARRANTY.
271s You are welcome to redistribute it under certain conditions.
271s Type 'license()' or 'licence()' for distribution details.
271s 
271s R is a collaborative project with many contributors.
271s Type 'contributors()' for more information and
271s 'citation()' on how to cite R or R packages in publications.
271s 
271s Type 'demo()' for some demos, 'help()' for on-line help, or
271s 'help.start()' for an HTML browser interface to help.
271s Type 'q()' to quit R.
271s 
271s > ## git2r, R bindings to the libgit2 library.
271s > ## Copyright (C) 2013-2023 The git2r contributors
271s > ##
271s > ## This program is free software; you can redistribute it and/or modify
271s > ## it under the terms of the GNU General Public License, version 2,
271s > ## as published by the Free Software Foundation.
271s > ##
271s > ## git2r is distributed in the hope that it will be useful,
271s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
271s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
271s > ## GNU General Public License for more details.
271s > ##
271s > ## You should have received a copy of the GNU General Public License along
271s > ## with this program; if not, write to the Free Software Foundation, Inc.,
271s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
271s > 
271s > library("git2r")
271s > 
271s > ## For debugging
271s > sessionInfo()
271s R version 4.3.3 (2024-02-29)
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s Running under: Ubuntu Noble Numbat (development branch)
271s 
271s Matrix products: default
271s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
271s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
271s 
271s locale:
271s [1] C
271s 
271s time zone: Etc/UTC
271s tzcode source: system (glibc)
271s 
271s attached base packages:
271s [1] stats     graphics  grDevices utils     datasets  methods   base     
271s 
271s other attached packages:
271s [1] git2r_0.33.0
271s 
271s loaded via a namespace (and not attached):
271s [1] compiler_4.3.3
271s > libgit2_version()
271s $major
271s [1] 1
271s 
271s $minor
271s [1] 7
271s 
271s $rev
271s [1] 2
271s 
271s > libgit2_features()
271s $threads
271s [1] TRUE
271s 
271s $https
271s [1] TRUE
271s 
271s $ssh
271s [1] TRUE
271s 
271s > 
271s > 
271s > ## Create 2 directories in tempdir
271s > path_src <- tempfile(pattern = "git2r-")
271s > path_tgt <- tempfile(pattern = "git2r-")
271s > dir.create(path_tgt)
271s > dir.create(path_src)
271s > 
271s > ## Initialize a repository
271s > repo_src <- init(path_src)
271s > config(repo_src, user.name = "Alice", user.email = "alice@example.org")
271s > 
271s > ## Add commit to repo
271s > filename <- "test.txt"
271s > writeLines("Hello world", con = file.path(path_src, filename))
271s > add(repo_src, "test.txt")
271s > commit_src <- commit(repo_src, "Commit message")
271s > 
271s > ## Check checkout argument
271s > tools::assertError(clone(path_src, path_tgt, checkout = c(FALSE, TRUE)))
271s > tools::assertError(clone(path_src, path_tgt, checkout = 1))
271s > tools::assertError(clone(path_src, path_tgt, checkout = 1L))
271s > tools::assertError(clone(path_src, path_tgt, checkout = "test"))
271s > 
271s > ## Clone source to target repository without checking out any files
271s > repo_tgt <- clone(path_src, path_tgt, checkout = FALSE)
271s cloning into '/tmp/RtmpCkq74j/git2r-8313c3f8924'...
271s > 
271s > ## List files in the repositores
271s > stopifnot(identical(list.files(path_src), filename))
271s > stopifnot(identical(list.files(path_tgt), character(0)))
271s > 
271s > ## Compare commits
271s > stopifnot(identical(length(commits(repo_tgt)), 1L))
271s > commit_tgt <- last_commit(repo_tgt)
271s > stopifnot(identical(sha(last_commit(path_tgt)), sha(commit_tgt)))
271s > stopifnot(identical(sha(commit_src), sha(commit_tgt)))
271s > stopifnot(identical(commit_src$author, commit_tgt$author))
271s > stopifnot(identical(commit_src$committer, commit_tgt$committer))
271s > stopifnot(identical(commit_src$summary, commit_tgt$summary))
271s > stopifnot(identical(commit_src$message, commit_tgt$message))
271s > stopifnot(!identical(commit_src$repo, commit_tgt$repo))
271s > 
271s > ## Cleanup
271s > unlink(path_tgt, recursive = TRUE)
271s > unlink(path_src, recursive = TRUE)
271s > 
271s BEGIN TEST commit.R
271s 
271s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
271s Copyright (C) 2024 The R Foundation for Statistical Computing
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s 
271s R is free software and comes with ABSOLUTELY NO WARRANTY.
271s You are welcome to redistribute it under certain conditions.
271s Type 'license()' or 'licence()' for distribution details.
271s 
271s R is a collaborative project with many contributors.
271s Type 'contributors()' for more information and
271s 'citation()' on how to cite R or R packages in publications.
271s 
271s Type 'demo()' for some demos, 'help()' for on-line help, or
271s 'help.start()' for an HTML browser interface to help.
271s Type 'q()' to quit R.
271s 
271s > ## git2r, R bindings to the libgit2 library.
271s > ## Copyright (C) 2013-2023 The git2r contributors
271s > ##
271s > ## This program is free software; you can redistribute it and/or modify
271s > ## it under the terms of the GNU General Public License, version 2,
271s > ## as published by the Free Software Foundation.
271s > ##
271s > ## git2r is distributed in the hope that it will be useful,
271s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
271s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
271s > ## GNU General Public License for more details.
271s > ##
271s > ## You should have received a copy of the GNU General Public License along
271s > ## with this program; if not, write to the Free Software Foundation, Inc.,
271s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
271s > 
271s > library(git2r)
271s > source("util/check.R")
271s > 
271s > ## For debugging
271s > sessionInfo()
271s R version 4.3.3 (2024-02-29)
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s Running under: Ubuntu Noble Numbat (development branch)
271s 
271s Matrix products: default
271s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
271s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
271s 
271s locale:
271s [1] C
271s 
271s time zone: Etc/UTC
271s tzcode source: system (glibc)
271s 
271s attached base packages:
271s [1] stats     graphics  grDevices utils     datasets  methods   base     
271s 
271s other attached packages:
271s [1] git2r_0.33.0
271s 
271s loaded via a namespace (and not attached):
271s [1] compiler_4.3.3
271s > libgit2_version()
271s $major
271s [1] 1
271s 
271s $minor
271s [1] 7
271s 
271s $rev
271s [1] 2
271s 
271s > libgit2_features()
271s $threads
271s [1] TRUE
271s 
271s $https
271s [1] TRUE
271s 
271s $ssh
271s [1] TRUE
271s 
271s > 
271s > 
271s > ## Create a directory in tempdir
271s > path <- tempfile(pattern = "git2r-")
271s > dir.create(path)
271s > 
271s > ## Initialize a repository
271s > repo <- init(path)
271s > config(repo, user.name = "Alice", user.email = "alice@example.org")
271s > 
271s > ## Commit without adding changes should produce an error
271s > tools::assertError(commit(repo, "Test to commit"))
271s > 
271s > ## Create a file
271s > writeLines("Hello world!", file.path(path, "test.txt"))
271s > 
271s > ## Commit without adding changes should produce an error
271s > tools::assertError(commit(repo, "Test to commit"))
271s > 
271s > ## Add
271s > add(repo, "test.txt")
271s > 
271s > ## Commit with empty message should produce an error
271s > tools::assertError(commit(repo, ""))
271s > 
271s > ## Commit
271s > commit_1 <- commit(repo, "Commit message", session = TRUE)
271s > summary(commit_1)
271s Commit:  9981010804b7fc03ca4af918214c53990edb11c9
271s Author:  Alice <alice@example.org>
271s When:    2024-03-23 01:14:49 GMT
271s 
271s      Commit message
271s      
271s      sessionInfo:
271s      R version 4.3.3 (2024-02-29)
271s      Platform: arm-unknown-linux-gnueabihf (32-bit)
271s      Running under: Ubuntu Noble Numbat (development branch)
271s      
271s      Matrix products: default
271s      BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
271s      LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
271s      
271s      locale:
271s      [1] C
271s      
271s      time zone: Etc/UTC
271s      tzcode source: system (glibc)
271s      
271s      attached base packages:
271s      [1] stats     graphics  grDevices utils     datasets  methods   base     
271s      
271s      other attached packages:
271s      [1] git2r_0.33.0
271s      
271s      loaded via a namespace (and not attached):
271s      [1] compiler_4.3.3 tools_4.3.3   
271s > tag_1 <- tag(repo, "Tagname1", "Tag message 1")
271s > 
271s > ## Check commit
271s > stopifnot(identical(commit_1$author$name, "Alice"))
271s > stopifnot(identical(commit_1$author$email, "alice@example.org"))
271s > stopifnot(identical(lookup(repo, sha(commit_1)), commit_1))
271s > stopifnot(identical(length(commits(repo)), 1L))
271s > stopifnot(identical(commits(repo)[[1]]$author$name, "Alice"))
271s > stopifnot(identical(commits(repo)[[1]]$author$email, "alice@example.org"))
271s > stopifnot(identical(parents(commit_1), list()))
271s > stopifnot(identical(print(commit_1), commit_1))
271s [9981010] 2024-03-23: Commit message
271s > 
271s > ## Check is_commit
271s > stopifnot(identical(is_commit(commit_1), TRUE))
271s > stopifnot(identical(is_commit(5), FALSE))
271s > 
271s > ## Commit without adding changes should produce an error
271s > tools::assertError(commit(repo, "Test to commit"))
271s > 
271s > ## Add another commit
271s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test.txt"))
271s > add(repo, "test.txt")
271s > commit_2 <- commit(repo, "Commit message 2")
271s > summary(commit_2)
271s Commit:  6ef88e07d838e58a40eaa8a1657d8cb971efe262
271s Author:  Alice <alice@example.org>
271s When:    2024-03-23 01:14:49 GMT
271s 
271s      Commit message 2
271s 1 file changed, 1 insertions, 0 deletions
271s test.txt | -0 +1  in 1 hunk
271s 
271s > tag_2 <- tag(repo, "Tagname2", "Tag message 2")
271s > 
271s > ## Check relationship
271s > stopifnot(identical(descendant_of(commit_2, commit_1), TRUE))
271s > stopifnot(identical(descendant_of(commit_1, commit_2), FALSE))
271s > stopifnot(identical(descendant_of(tag_2, tag_1), TRUE))
271s > stopifnot(identical(descendant_of(tag_1, tag_2), FALSE))
271s > stopifnot(identical(descendant_of(branches(repo)[[1]], commit_1), TRUE))
271s > stopifnot(identical(descendant_of(commit_1, branches(repo)[[1]]), FALSE))
271s > stopifnot(identical(length(parents(commit_2)), 1L))
271s > stopifnot(identical(parents(commit_2)[[1]], commit_1))
271s > 
271s > ## Check contributions
271s > stopifnot(identical(
271s +     colnames(contributions(repo, by = "author", breaks = "day")),
271s +     c("when", "author", "n")))
271s > stopifnot(identical(colnames(contributions(repo)),
271s +                     c("when", "n")))
271s > stopifnot(identical(nrow(contributions(repo)), 1L))
271s > stopifnot(identical(contributions(repo)$n, 2L))
271s > stopifnot(identical(contributions(repo, by = "author", breaks = "day")$n, 2L))
271s > 
271s > ## Add another commit with 'all' argument
271s > writeLines(c("Hello world!", "HELLO WORLD!", "HeLlO wOrLd!"),
271s +            file.path(path, "test.txt"))
271s > commit(repo, "Commit message 3", all = TRUE)
271s [8a919d1] 2024-03-23: Commit message 3
271s > 
271s > status_clean <- structure(list(staged = empty_named_list(),
271s +                                unstaged = empty_named_list(),
271s +                                untracked = empty_named_list()),
271s +                           class = "git_status")
271s > stopifnot(identical(status(repo), status_clean))
271s > 
271s > ## Delete file and commit with 'all' argument
271s > file.remove(file.path(path, "test.txt"))
271s [1] TRUE
271s > commit(repo, "Commit message 4", all = TRUE)
271s [84844a0] 2024-03-23: Commit message 4
271s > 
271s > stopifnot(identical(status(repo), status_clean))
271s > 
271s > ## Add and commit multiple tracked files with 'all' argument
271s > writeLines(sample(letters, 3), file.path(path, "test2.txt"))
271s > add(repo, "test2.txt")
271s > writeLines(sample(letters, 3), file.path(path, "test3.txt"))
271s > add(repo, "test3.txt")
271s > writeLines(sample(letters, 3), file.path(path, "test4.txt"))
271s > add(repo, "test4.txt")
271s > commit(repo, "Commit message 5")
271s [aeae9d5] 2024-03-23: Commit message 5
271s > 
271s > stopifnot(identical(status(repo), status_clean))
271s > 
271s > writeLines(sample(letters, 3), file.path(path, "test2.txt"))
271s > writeLines(sample(letters, 3), file.path(path, "test3.txt"))
271s > writeLines(sample(letters, 3), file.path(path, "test4.txt"))
271s > commit(repo, "Commit message 6", all = TRUE)
271s [cb0d415] 2024-03-23: Commit message 6
271s > 
271s > stopifnot(identical(status(repo), status_clean))
271s > 
271s > ## Add one tracked file and delete another with 'all' argument
271s > writeLines(sample(letters, 3), file.path(path, "test2.txt"))
271s > file.remove(file.path(path, "test4.txt"))
271s [1] TRUE
271s > commit(repo, "Commit message 7", all = TRUE)
271s [66e2f62] 2024-03-23: Commit message 7
271s > 
271s > stopifnot(identical(status(repo), status_clean))
271s > 
271s > ## Delete multiple tracked files with 'all' argument
271s > file.remove(file.path(path, "test2.txt"))
271s [1] TRUE
271s > file.remove(file.path(path, "test3.txt"))
271s [1] TRUE
271s > commit(repo, "Commit message 8", all = TRUE)
271s [2a6deb6] 2024-03-23: Commit message 8
271s > 
271s > stopifnot(identical(status(repo), status_clean))
271s > 
271s > ## Check max number of commits in output
271s > stopifnot(identical(length(commits(repo)), 8L))
271s > stopifnot(identical(length(commits(repo, n = -1)), 8L))
271s > stopifnot(identical(length(commits(repo, n = 2)), 2L))
271s > tools::assertError(commits(repo, n = 2.2))
271s > tools::assertError(commits(repo, n = "2"))
271s > tools::assertError(commits(repo, n = 1:2))
271s > 
271s > ## Check to coerce repository to data.frame
271s > df <- as.data.frame(repo)
271s > stopifnot(identical(dim(df), c(8L, 6L)))
271s > stopifnot(identical(names(df), c("sha", "summary", "message",
271s +                                  "author", "email", "when")))
271s > 
271s > ## Set working directory to path and check commits
271s > setwd(path)
271s > stopifnot(identical(sha(last_commit()), sha(commits(repo, n = 1)[[1]])))
271s > stopifnot(identical(length(commits()), 8L))
271s > stopifnot(identical(length(commits(n = -1)), 8L))
271s > stopifnot(identical(length(commits(n = 2)), 2L))
271s > tools::assertError(commits(n = 2.2))
271s > tools::assertError(commits(n = "2"))
271s > 
271s > ## Check plot method
271s > plot_file <- tempfile(fileext = ".pdf")
271s > pdf(plot_file)
271s > plot(repo)
271s > dev.off()
271s null device 
271s           1 
271s > stopifnot(file.exists(plot_file))
271s > unlink(plot_file)
271s > 
271s > ## Check punch card plot method
271s > punch_card_plot_file <- tempfile(fileext = ".pdf")
271s > pdf(punch_card_plot_file)
271s > punch_card(repo)
271s > dev.off()
271s null device 
271s           1 
271s > stopifnot(file.exists(punch_card_plot_file))
271s > unlink(punch_card_plot_file)
271s > 
271s > ## Check that 'git2r_arg_check_commit' raise error
271s > res <- tools::assertError(.Call(git2r:::git2r_commit_tree, NULL))
271s > stopifnot(length(grep("'commit' must be an S3 class git_commit",
271s +                       res[[1]]$message)) > 0)
271s > res <- tools::assertError(.Call(git2r:::git2r_commit_tree, 3))
271s > stopifnot(length(grep("'commit' must be an S3 class git_commit",
271s +                       res[[1]]$message)) > 0)
271s > res <- tools::assertError(.Call(git2r:::git2r_commit_tree, repo))
271s > stopifnot(length(grep("'commit' must be an S3 class git_commit",
271s +                       res[[1]]$message)) > 0)
271s > commit_1$sha <- NA_character_
271s > res <- tools::assertError(.Call(git2r:::git2r_commit_tree, commit_1))
271s > stopifnot(length(grep("'commit' must be an S3 class git_commit",
271s +                       res[[1]]$message)) > 0)
271s > 
271s > ## Cleanup
271s > unlink(path, recursive = TRUE)
271s > 
271s > if (identical(Sys.getenv("NOT_CRAN"), "true") ||
271s +     identical(Sys.getenv("R_COVR"), "true")) {
271s +     path <- tempfile(pattern = "git2r-")
271s +     dir.create(path)
271s +     setwd(path)
271s +     system("git clone --depth 2 https://github.com/ropensci/git2r.git")
271s + 
271s +     ## Check the number of commits in the shallow clone.
271s +     stopifnot(identical(length(commits(repository("git2r"))), 2L))
271s +     stopifnot(identical(length(commits(repository("git2r"), n = 1)), 1L))
271s + 
271s +     ## Cleanup
271s +     unlink(path, recursive = TRUE)
271s + }
271s > 
271s sh: 0: getcwd() failed: No such file or directory
271s BEGIN TEST commits_path.R
271s 
271s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
271s Copyright (C) 2024 The R Foundation for Statistical Computing
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s 
271s R is free software and comes with ABSOLUTELY NO WARRANTY.
271s You are welcome to redistribute it under certain conditions.
271s Type 'license()' or 'licence()' for distribution details.
271s 
271s R is a collaborative project with many contributors.
271s Type 'contributors()' for more information and
271s 'citation()' on how to cite R or R packages in publications.
271s 
271s Type 'demo()' for some demos, 'help()' for on-line help, or
271s 'help.start()' for an HTML browser interface to help.
271s Type 'q()' to quit R.
271s 
271s > ## git2r, R bindings to the libgit2 library.
271s > ## Copyright (C) 2013-2023 The git2r contributors
271s > ##
271s > ## This program is free software; you can redistribute it and/or modify
271s > ## it under the terms of the GNU General Public License, version 2,
271s > ## as published by the Free Software Foundation.
271s > ##
271s > ## git2r is distributed in the hope that it will be useful,
271s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
271s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
271s > ## GNU General Public License for more details.
271s > ##
271s > ## You should have received a copy of the GNU General Public License along
271s > ## with this program; if not, write to the Free Software Foundation, Inc.,
271s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
271s > 
271s > library(git2r)
271s > 
271s > ## For debugging
271s > sessionInfo()
271s R version 4.3.3 (2024-02-29)
271s Platform: arm-unknown-linux-gnueabihf (32-bit)
271s Running under: Ubuntu Noble Numbat (development branch)
271s 
271s Matrix products: default
271s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
271s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
271s 
271s locale:
271s [1] C
271s 
271s time zone: Etc/UTC
271s tzcode source: system (glibc)
271s 
271s attached base packages:
271s [1] stats     graphics  grDevices utils     datasets  methods   base     
271s 
271s other attached packages:
271s [1] git2r_0.33.0
271s 
271s loaded via a namespace (and not attached):
271s [1] compiler_4.3.3
271s > libgit2_version()
271s $major
271s [1] 1
271s 
271s $minor
271s [1] 7
271s 
271s $rev
271s [1] 2
271s 
271s > libgit2_features()
271s $threads
271s [1] TRUE
271s 
271s $https
271s [1] TRUE
271s 
271s $ssh
271s [1] TRUE
271s 
271s > 
271s > 
271s > ## Create a directory in tempdir
271s > path <- tempfile(pattern = "git2r-")
271s > dir.create(path)
271s > 
271s > ## Initialize a repository
271s > repo <- init(path, branch = "main")
271s > config(repo, user.name = "Alice", user.email = "alice@example.org")
271s > 
271s > ## Create two files and alternate commits
271s > writeLines("1", file.path(path, "odd.txt"))
271s > add(repo, "odd.txt")
271s > c1 <- commit(repo, "commit 1")
271s > 
271s > writeLines("2", file.path(path, "even.txt"))
271s > add(repo, "even.txt")
272s > c2 <- commit(repo, "commit 2")
272s > 
272s > writeLines("3", file.path(path, "odd.txt"))
272s > add(repo, "odd.txt")
272s > c3 <- commit(repo, "commit 3")
272s > 
272s > writeLines("4", file.path(path, "even.txt"))
272s > add(repo, "even.txt")
272s > c4 <- commit(repo, "commit 4")
272s > 
272s > writeLines("5", file.path(path, "odd.txt"))
272s > add(repo, "odd.txt")
272s > c5 <- commit(repo, "commit 5")
272s > 
272s > writeLines("6", file.path(path, "even.txt"))
272s > add(repo, "even.txt")
272s > c6 <- commit(repo, "commit 6")
272s > 
272s > commits_all <- commits(repo)
272s > stopifnot(length(commits_all) == 6)
272s > 
272s > ## Test path
272s > commits_odd <- commits(repo, path = "odd.txt")
272s > stopifnot(length(commits_odd) == 3)
272s > stopifnot(commits_odd[[1]]$sha == c5$sha)
272s > stopifnot(commits_odd[[2]]$sha == c3$sha)
272s > stopifnot(commits_odd[[3]]$sha == c1$sha)
272s > 
272s > commits_even <- commits(repo, path = "even.txt")
272s > stopifnot(length(commits_even) == 3)
272s > stopifnot(commits_even[[1]]$sha == c6$sha)
272s > stopifnot(commits_even[[2]]$sha == c4$sha)
272s > stopifnot(commits_even[[3]]$sha == c2$sha)
272s > 
272s > ## Test reverse
272s > commits_odd_rev <- commits(repo, reverse = TRUE, path = "odd.txt")
272s > stopifnot(length(commits_odd_rev) == 3)
272s > stopifnot(commits_odd_rev[[1]]$sha == c1$sha)
272s > stopifnot(commits_odd_rev[[2]]$sha == c3$sha)
272s > stopifnot(commits_odd_rev[[3]]$sha == c5$sha)
272s > 
272s > commits_even_rev <- commits(repo, reverse = TRUE, path = "even.txt")
272s > stopifnot(length(commits_even_rev) == 3)
272s > stopifnot(commits_even_rev[[1]]$sha == c2$sha)
272s > stopifnot(commits_even_rev[[2]]$sha == c4$sha)
272s > stopifnot(commits_even_rev[[3]]$sha == c6$sha)
272s > 
272s > ## Test n
272s > commits_odd_n <- commits(repo, n = 2, path = "odd.txt")
272s > stopifnot(length(commits_odd_n) == 2)
272s > stopifnot(commits_odd_n[[1]]$sha == c5$sha)
272s > stopifnot(commits_odd_n[[2]]$sha == c3$sha)
272s > 
272s > commits_even_n <- commits(repo, n = 2, path = "even.txt")
272s > stopifnot(length(commits_even_n) == 2)
272s > stopifnot(commits_even_n[[1]]$sha == c6$sha)
272s > stopifnot(commits_even_n[[2]]$sha == c4$sha)
272s > 
272s > commits_odd_0 <- commits(repo, n = 0, path = "odd.txt")
272s > stopifnot(length(commits_odd_0) == 0)
272s > stopifnot(identical(commits_odd_0, list()))
272s > 
272s > commits_even_0 <- commits(repo, n = 0, path = "even.txt")
272s > stopifnot(length(commits_even_0) == 0)
272s > stopifnot(identical(commits_even_0, list()))
272s > 
272s > ## Test ref
272s > checkout(repo, branch = "test-ref", create = TRUE)
272s > 
272s > writeLines("7", file.path(path, "odd.txt"))
272s > add(repo, "odd.txt")
272s > c7 <- commit(repo, "commit 7")
272s > 
272s > writeLines("8", file.path(path, "even.txt"))
272s > add(repo, "even.txt")
272s > c8 <- commit(repo, "commit 8")
272s > 
272s > commits_odd_ref <- commits(repo, ref = "main", path = "odd.txt")
272s > stopifnot(length(commits_odd_ref) == 3)
272s > stopifnot(commits_odd_ref[[1]]$sha == c5$sha)
272s > stopifnot(commits_odd_ref[[2]]$sha == c3$sha)
272s > stopifnot(commits_odd_ref[[3]]$sha == c1$sha)
272s > 
272s > commits_even_ref <- commits(repo, ref = "main", path = "even.txt")
272s > stopifnot(length(commits_even_ref) == 3)
272s > stopifnot(commits_even_ref[[1]]$sha == c6$sha)
272s > stopifnot(commits_even_ref[[2]]$sha == c4$sha)
272s > stopifnot(commits_even_ref[[3]]$sha == c2$sha)
272s > 
272s > checkout(repo, branch = "main")
272s > 
272s > ## Test renaming a file (path does not support --follow)
272s > writeLines("a file to be renamed", file.path(path, "original.txt"))
272s > add(repo, "original.txt")
272s > c_original <- commit(repo, "commit original")
272s > 
272s > commits_original <- commits(repo, path = "original.txt")
272s > stopifnot(length(commits_original) == 1)
272s > stopifnot(commits_original[[1]]$sha == c_original$sha)
272s > 
272s > file.rename(file.path(path, "original.txt"), file.path(path, "new.txt"))
272s [1] TRUE
272s > add(repo, c("original.txt", "new.txt"))
272s > c_new <- commit(repo, "commit new")
272s > 
272s > commits_new <- commits(repo, path = "new.txt")
272s > stopifnot(length(commits_new) == 1)
272s > stopifnot(commits_new[[1]]$sha == c_new$sha)
272s > 
272s > ## Test merge commits
272s > writeLines(letters[1:5], file.path(path, "merge.txt"))
272s > add(repo, "merge.txt")
272s > c_merge_1 <- commit(repo, "commit merge 1")
272s > 
272s > checkout(repo, branch = "test-merge", create = TRUE)
272s > cat("z", file = file.path(path, "merge.txt"), append = TRUE)
272s > add(repo, "merge.txt")
272s > c_merge_2 <- commit(repo, "commit merge 2")
272s > 
272s > checkout(repo, branch = "main")
272s > writeLines(c("A", letters[2:5]), file.path(path, "merge.txt"))
272s > add(repo, "merge.txt")
272s > c_merge_3 <- commit(repo, "commit merge 3")
272s > 
272s > c_merge_4 <- merge(repo, "test-merge")
272s > stopifnot(class(c_merge_4) == "git_merge_result")
272s > 
272s > commits_merge <- commits(repo, path = "merge.txt")
272s > stopifnot(length(commits_merge) == 4)
272s > stopifnot(commits_merge[[1]]$sha == c_merge_4$sha)
272s > stopifnot(commits_merge[[2]]$sha == c_merge_3$sha)
272s > stopifnot(commits_merge[[3]]$sha == c_merge_2$sha)
272s > stopifnot(commits_merge[[4]]$sha == c_merge_1$sha)
272s > 
272s > ## Test absolute path
272s > writeLines("absolute", file.path(path, "abs.txt"))
272s > add(repo, "abs.txt")
272s > c_abs <- commit(repo, "commit absolute")
272s > 
272s > commits_abs <- commits(repo, path = file.path(path, "abs.txt"))
272s > stopifnot(length(commits_abs) == 1)
272s > stopifnot(commits_abs[[1]]$sha == c_abs$sha)
272s > 
272s > ## Test topological and time
272s > ## Strategy:
272s > ##   - Commit a new file test-time.txt
272s > ##   - Commit a change on branch test-time-1 (a)
272s > ##   - Commit a change on branch test-time-2 (c)
272s > ##   - Commit a change on branch test-time-1 (b)
272s > ##   - Commit a change on branch test-time-2 (d)
272s > ##   - Merge branch test-time-2 into main (fast-forward)
272s > ##   - Merge branch test-time-1 into main (merge commit)
272s > ##
272s > ## $ git log --all --decorate --oneline --graph -n 6
272s > ## *   79e6880 (HEAD -> main) merge test-time-1
272s > ## |\
272s > ## | * e2f18f1 (test-time-1) commit b
272s > ## | * 5f34820 commit a
272s > ## * | b954ec9 (test-time-2) commit d
272s > ## * | 7ae2fd5 commit c
272s > ## |/
272s > ## * 923f3ea commit base
272s > Sys.sleep(1)
273s > writeLines(as.character(1:100), file.path(path, "test-time.txt"))
273s > add(repo, "test-time.txt")
273s > c_base <- commit(repo, "commit base")
273s > Sys.sleep(1)
274s > branch_create(commit = c_base, name = "test-time-1")
274s > branch_create(commit = c_base, name = "test-time-2")
274s > 
274s > checkout(repo, branch = "test-time-1")
274s > writeLines(c("edit", 2:100), file.path(path, "test-time.txt"))
274s > add(repo, "test-time.txt")
274s > c_a <- commit(repo, "commit a")
274s > Sys.sleep(1)
275s > 
275s > checkout(repo, branch = "test-time-2")
275s > writeLines(c(1:25, "edit", 27:100), file.path(path, "test-time.txt"))
275s > add(repo, "test-time.txt")
275s > c_c <- commit(repo, "commit c")
275s > Sys.sleep(1)
276s > 
276s > checkout(repo, branch = "test-time-1")
276s > writeLines(c(1:50, "edit", 52:100), file.path(path, "test-time.txt"))
276s > add(repo, "test-time.txt")
276s > c_b <- commit(repo, "commit b")
276s > Sys.sleep(1)
277s > 
277s > checkout(repo, branch = "test-time-2")
277s > writeLines(c(1:75, "edit", 77:100), file.path(path, "test-time.txt"))
277s > add(repo, "test-time.txt")
277s > c_d <- commit(repo, "commit d")
277s > Sys.sleep(1)
278s > 
278s > checkout(repo, branch = "main")
278s > merge(repo, "test-time-2") # Fast-forward
278s Merge: Fast-forward
278s > merge(repo, "test-time-1") # Merge commit
278s Merge
278s > c_merge_time <- commits(repo, n = 1)[[1]]
278s > 
278s > ## topological - commits in test-time-2 come first because it was
278s > ## merged first
278s > stopifnot(identical(
278s +     commits(repo, topological = TRUE, time = FALSE, path = "test-time.txt"),
278s +     list(c_merge_time, c_b, c_a, c_d, c_c, c_base)
278s + ))
278s > stopifnot(identical(
278s +     commits(repo, topological = TRUE, time = FALSE, path = "test-time.txt"),
278s +     commits(repo, topological = TRUE, time = FALSE)[1:6]
278s + ))
278s > 
278s > ## time - commits ordered by time they were created, not merged into
278s > ## main
278s > stopifnot(identical(
278s +     commits(repo, topological = FALSE, time = TRUE, path = "test-time.txt"),
278s +     list(c_merge_time, c_d, c_b, c_c, c_a, c_base)
278s + ))
278s > stopifnot(identical(
278s +     commits(repo, topological = FALSE, time = TRUE, path = "test-time.txt"),
278s +     commits(repo, topological = FALSE, time = TRUE)[1:6]
278s + ))
278s > 
278s > ## topological and time - dominated by time
278s > stopifnot(identical(
278s +     commits(repo, topological = TRUE, time = TRUE, path = "test-time.txt"),
278s +     list(c_merge_time, c_d, c_b, c_c, c_a, c_base)
278s + ))
278s > stopifnot(identical(
278s +     commits(repo, topological = TRUE, time = TRUE, path = "test-time.txt"),
278s +     commits(repo, topological = TRUE, time = TRUE)[1:6]
278s + ))
278s > 
278s > ## reverse with topological and/or time
278s > stopifnot(identical(
278s +     commits(repo, topological = TRUE, time = FALSE, reverse = TRUE,
278s +             path = "test-time.txt"),
278s +     rev(list(c_merge_time, c_b, c_a, c_d, c_c, c_base))
278s + ))
278s > stopifnot(identical(
278s +     commits(repo, topological = FALSE, time = TRUE, reverse = TRUE,
278s +             path = "test-time.txt"),
278s +     rev(list(c_merge_time, c_d, c_b, c_c, c_a, c_base))
278s + ))
278s > stopifnot(identical(
278s +     commits(repo, topological = TRUE, time = TRUE, reverse = TRUE,
278s +             path = "test-time.txt"),
278s +     rev(list(c_merge_time, c_d, c_b, c_c, c_a, c_base))
278s + ))
278s > 
278s > ## Cleanup
278s > unlink(path, recursive = TRUE)
278s > 
278s BEGIN TEST config.R
278s 
278s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
278s Copyright (C) 2024 The R Foundation for Statistical Computing
278s Platform: arm-unknown-linux-gnueabihf (32-bit)
278s 
278s R is free software and comes with ABSOLUTELY NO WARRANTY.
278s You are welcome to redistribute it under certain conditions.
278s Type 'license()' or 'licence()' for distribution details.
278s 
278s R is a collaborative project with many contributors.
278s Type 'contributors()' for more information and
278s 'citation()' on how to cite R or R packages in publications.
278s 
278s Type 'demo()' for some demos, 'help()' for on-line help, or
278s 'help.start()' for an HTML browser interface to help.
278s Type 'q()' to quit R.
278s 
278s > ## git2r, R bindings to the libgit2 library.
278s > ## Copyright (C) 2013-2023 The git2r contributors
278s > ##
278s > ## This program is free software; you can redistribute it and/or modify
278s > ## it under the terms of the GNU General Public License, version 2,
278s > ## as published by the Free Software Foundation.
278s > ##
278s > ## git2r is distributed in the hope that it will be useful,
278s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
278s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
278s > ## GNU General Public License for more details.
278s > ##
278s > ## You should have received a copy of the GNU General Public License along
278s > ## with this program; if not, write to the Free Software Foundation, Inc.,
278s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
278s > 
278s > library("git2r")
278s > 
278s > ## For debugging
278s > sessionInfo()
278s R version 4.3.3 (2024-02-29)
278s Platform: arm-unknown-linux-gnueabihf (32-bit)
278s Running under: Ubuntu Noble Numbat (development branch)
278s 
278s Matrix products: default
278s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
278s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
278s 
278s locale:
278s [1] C
278s 
278s time zone: Etc/UTC
278s tzcode source: system (glibc)
278s 
278s attached base packages:
278s [1] stats     graphics  grDevices utils     datasets  methods   base     
278s 
278s other attached packages:
278s [1] git2r_0.33.0
278s 
278s loaded via a namespace (and not attached):
278s [1] compiler_4.3.3
278s > libgit2_version()
278s $major
278s [1] 1
278s 
278s $minor
278s [1] 7
278s 
278s $rev
278s [1] 2
278s 
278s > libgit2_features()
278s $threads
278s [1] TRUE
278s 
278s $https
278s [1] TRUE
278s 
278s $ssh
278s [1] TRUE
278s 
278s > 
278s > 
278s > ## Create a directory in tempdir
278s > path <- tempfile(pattern = "git2r-")
278s > dir.create(path)
278s > 
278s > ## Initialize a repository
278s > repo <- init(path)
278s > 
278s > ## Config repository
278s > cfg <- config(repo, user.name = "Alice", user.email = "alice@example.org")
278s > 
278s > ## Check configuration
278s > stopifnot(identical(print(cfg), cfg))
278s local:
278s         core.bare=false
278s         core.filemode=true
278s         core.logallrefupdates=true
278s         core.repositoryformatversion=0
278s         user.email=alice@example.org
278s         user.name=Alice
278s > stopifnot("local" %in% names(cfg))
278s > stopifnot("user.name" %in% names(cfg$local))
278s > stopifnot(identical(cfg$local$user.name, "Alice"))
278s > stopifnot(identical(cfg$local$user.email, "alice@example.org"))
278s > 
278s > ## Check that config fails for non-character entry.
278s > tools::assertError(config(repo, test = 5))
278s > 
278s > ## Check config method with missing repo argument
278s > wd <- setwd(path)
278s > cfg <- config(user.name = "Alice", user.email = "alice@example.org")
278s > stopifnot("local" %in% names(cfg))
278s > stopifnot("user.name" %in% names(cfg$local))
278s > stopifnot(identical(cfg$local$user.name, "Alice"))
278s > stopifnot(identical(cfg$local$user.email, "alice@example.org"))
278s > stopifnot(identical(git_config_files(repo = repo)$local,
278s +                     git_config_files(repo = NULL)$local))
278s > stopifnot(identical(git_config_files(repo = repo)$local,
278s +                     git_config_files(repo = repo$path)$local))
278s > if (!is.null(wd))
278s +     setwd(wd)
278s > 
278s > ## Delete entries
278s > cfg <- config(repo, user.name = NULL, user.email = NULL)
278s > 
278s > ## Check configuration
278s > stopifnot(is.null(cfg$local$user.name))
278s > stopifnot(is.null(cfg$local$user.email))
278s > 
278s > ## Supply values as objects
278s > user_name <- "Alice"
278s > user_email <- "alice@example.org"
278s > cfg <- config(repo, user.name = user_name, user.email = "alice@example.org")
278s > stopifnot(identical(cfg$local$user.name, user_name))
278s > stopifnot(identical(cfg$local$user.email, "alice@example.org"))
278s > cfg <- config(repo, user.name = "Alice", user.email = user_email)
278s > stopifnot(identical(cfg$local$user.name, "Alice"))
278s > stopifnot(identical(cfg$local$user.email, user_email))
278s > 
278s > ## Check git config files
278s > cfg <- git_config_files(repo)
278s > stopifnot(identical(nrow(cfg), 4L))
278s > stopifnot(identical(names(cfg), c("file", "path")))
278s > stopifnot(identical(cfg$file, c("system", "xdg", "global", "local")))
278s > stopifnot(!is.na(cfg$path[4]))
278s > 
278s > ## Check that the local config file is NA for an invalid repo
278s > ## argument.
278s > stopifnot(is.na(git_config_files(5)$local))
278s > 
278s > ## Check location of .gitconfig on Windows
278s > if (identical(Sys.getenv("APPVEYOR"), "True")) {
278s + 
278s +   ## AppVeyor diagnostics
278s +   str(Sys.getenv("USERPROFILE"))
278s +   str(Sys.getenv("HOMEDRIVE"))
278s +   str(normalizePath("~"))
278s +   str(git_config_files())
278s + 
278s +   ## Temporarily move AppVeyor .gitconfig
278s +   gitconfig_appveyor <- "C:/Users/appveyor/.gitconfig"
278s +   gitconfig_tmp <- file.path(tempdir(), ".gitconfig")
278s +   file.rename(gitconfig_appveyor, gitconfig_tmp)
278s + 
278s +   ## Test config() on Windows
278s +   gitconfig_expected <- file.path(Sys.getenv("USERPROFILE"), ".gitconfig")
278s +   ## .gitconfig should not be created if no configuration options specified
278s +   config(global = TRUE)
278s +   stopifnot(!file.exists(gitconfig_expected))
278s +   ## .gitconfig should be created in the user's home directory
278s +   config(global = TRUE, user.name = "name", user.email = "email")
278s +   stopifnot(file.exists(gitconfig_expected))
278s +   unlink(gitconfig_expected)
278s +   ## .gitconfig should be created if user specifies option other than user.name
278s +   ## and user.email
278s +   config(global = TRUE, core.editor = "nano")
278s +   stopifnot(file.exists(gitconfig_expected))
278s +   unlink(gitconfig_expected)
278s +   ## .gitconfig should not create a new .gitconfig if the user already has one
278s +   ## in Documents/
278s +   gitconfig_documents <- "~/.gitconfig"
278s +   file.create(gitconfig_documents)
278s +   config(global = TRUE, core.editor = "nano")
278s +   stopifnot(!file.exists(gitconfig_expected))
278s +   unlink(gitconfig_documents)
278s + 
278s +   ## Return AppVeyor .gitconfig
278s +   file.rename(gitconfig_tmp, gitconfig_appveyor)
278s + }
278s > 
278s > ## Cleanup
278s > unlink(path, recursive = TRUE)
278s > 
278s BEGIN TEST diff.R
278s 
278s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
278s Copyright (C) 2024 The R Foundation for Statistical Computing
278s Platform: arm-unknown-linux-gnueabihf (32-bit)
278s 
278s R is free software and comes with ABSOLUTELY NO WARRANTY.
278s You are welcome to redistribute it under certain conditions.
278s Type 'license()' or 'licence()' for distribution details.
278s 
278s R is a collaborative project with many contributors.
278s Type 'contributors()' for more information and
278s 'citation()' on how to cite R or R packages in publications.
278s 
278s Type 'demo()' for some demos, 'help()' for on-line help, or
278s 'help.start()' for an HTML browser interface to help.
278s Type 'q()' to quit R.
278s 
278s > ## git2r, R bindings to the libgit2 library.
278s > ## Copyright (C) 2013-2023 The git2r contributors
278s > ##
278s > ## This program is free software; you can redistribute it and/or modify
278s > ## it under the terms of the GNU General Public License, version 2,
278s > ## as published by the Free Software Foundation.
278s > ##
278s > ## git2r is distributed in the hope that it will be useful,
278s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
278s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
278s > ## GNU General Public License for more details.
278s > ##
278s > ## You should have received a copy of the GNU General Public License along
278s > ## with this program; if not, write to the Free Software Foundation, Inc.,
278s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
278s > 
278s > library("git2r")
278s > 
278s > ## For debugging
278s > sessionInfo()
278s R version 4.3.3 (2024-02-29)
278s Platform: arm-unknown-linux-gnueabihf (32-bit)
278s Running under: Ubuntu Noble Numbat (development branch)
278s 
278s Matrix products: default
278s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
278s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
278s 
278s locale:
278s [1] C
278s 
278s time zone: Etc/UTC
278s tzcode source: system (glibc)
278s 
278s attached base packages:
278s [1] stats     graphics  grDevices utils     datasets  methods   base     
278s 
278s other attached packages:
278s [1] git2r_0.33.0
278s 
278s loaded via a namespace (and not attached):
278s [1] compiler_4.3.3
278s > libgit2_version()
278s $major
278s [1] 1
278s 
278s $minor
278s [1] 7
278s 
278s $rev
278s [1] 2
278s 
278s > libgit2_features()
278s $threads
278s [1] TRUE
278s 
278s $https
278s [1] TRUE
278s 
278s $ssh
278s [1] TRUE
278s 
278s > 
278s > 
278s > ## Create a directory in tempdir
278s > path <- tempfile(pattern = "git2r-")
278s > dir.create(path)
278s > 
278s > ## Initialize a repository
278s > repo <- init(path)
278s > config(repo, user.name = "Alice", user.email = "alice@example.org")
278s > 
278s > ## Create a file, add, commit
278s > writeLines("Hello world!", file.path(path, "test.txt"))
278s > add(repo, "test.txt")
278s > commit(repo, "Commit message")
278s [92ac1f2] 2024-03-23: Commit message
278s > 
278s > ## Change the file, diff between index and workdir
278s > writeLines("Hello again!\nHere is a second line\nAnd a third",
278s +            file.path(path, "test.txt"))
278s > diff_1 <- diff(repo)
278s > diff(repo, as_char = TRUE)
278s [1] "diff --git a/test.txt b/test.txt\nindex cd08755..cf48daf 100644\n--- a/test.txt\n+++ b/test.txt\n@@ -1 +1,3 @@\n-Hello world!\n+Hello again!\n+Here is a second line\n+And a third\n"
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(identical(diff_1$old, "index"))
278s > stopifnot(identical(diff_1$new, "workdir"))
278s > stopifnot(identical(length(diff_1$files), 1L))
278s > stopifnot(identical(diff_1$files[[1]]$old_file, "test.txt"))
278s > stopifnot(identical(diff_1$files[[1]]$new_file, "test.txt"))
278s > stopifnot(identical(length(diff_1$files[[1]]$hunks), 1L))
278s > stopifnot(identical(length(diff_1$files[[1]]$hunks[[1]]$lines), 4L))
278s > ## TODO: check actual diff
278s > 
278s > ## Diff between index and HEAD is empty
278s > diff_2 <- diff(repo, index = TRUE)
278s > diff(repo, as_char = TRUE)
278s [1] "diff --git a/test.txt b/test.txt\nindex cd08755..cf48daf 100644\n--- a/test.txt\n+++ b/test.txt\n@@ -1 +1,3 @@\n-Hello world!\n+Hello again!\n+Here is a second line\n+And a third\n"
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(identical(diff_2$old, "HEAD"))
278s > stopifnot(identical(diff_2$new, "index"))
278s > stopifnot(identical(diff_2$files, list()))
278s > 
278s > ## Diff between tree and working dir, same as diff_1
278s > diff_3 <- diff(tree(commits(repo)[[1]]))
278s > diff(repo, as_char = TRUE)
278s [1] "diff --git a/test.txt b/test.txt\nindex cd08755..cf48daf 100644\n--- a/test.txt\n+++ b/test.txt\n@@ -1 +1,3 @@\n-Hello world!\n+Hello again!\n+Here is a second line\n+And a third\n"
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(identical(diff_3$old, tree(commits(repo)[[1]])))
278s > stopifnot(identical(diff_3$new, "workdir"))
278s > stopifnot(identical(diff_3$files, diff_1$files))
278s > stopifnot(identical(print(diff_3), diff_3))
278s Old:  tree: a0b0b9e615e9e433eb5f11859e9feac4564c58c5
278s 
278s     mode type                                      sha     name
278s 1 100644 blob cd0875583aabe89ee197ea133980a9085d08e497 test.txt
278s New:  workdir 
278s > 
278s > ## Add changes, diff between index and HEAD is the same as diff_1
278s > add(repo, "test.txt")
278s > diff_4 <- diff(repo, index = TRUE)
278s > diff(repo, as_char = TRUE)
278s [1] ""
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(identical(diff_4$old, "HEAD"))
278s > stopifnot(identical(diff_4$new, "index"))
278s > stopifnot(identical(diff_4$files, diff_1$files))
278s > 
278s > ## Diff between tree and index
278s > diff_5 <- diff(tree(commits(repo)[[1]]), index = TRUE)
278s > diff(repo, as_char = TRUE)
278s [1] ""
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(identical(diff_5$old, tree(commits(repo)[[1]])))
278s > stopifnot(identical(diff_5$new, "index"))
278s > stopifnot(identical(diff_5$files, diff_1$files))
278s > 
278s > ## Diff between two trees
278s > commit(repo, "Second commit")
278s [78ae4f8] 2024-03-23: Second commit
278s > tree_1 <- tree(commits(repo)[[2]])
278s > tree_2 <- tree(commits(repo)[[1]])
278s > diff_6 <- diff(tree_1, tree_2)
278s > diff(repo, as_char = TRUE)
278s [1] ""
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(identical(diff_6$old, tree_1))
278s > stopifnot(identical(diff_6$new, tree_2))
278s > stopifnot(identical(diff_6$files, diff_1$files))
278s > 
278s > ## Length of a diff
278s > stopifnot(identical(length(diff_1), 1L))
278s > stopifnot(identical(length(diff_2), 0L))
278s > stopifnot(identical(length(diff_3), 1L))
278s > stopifnot(identical(length(diff_4), 1L))
278s > stopifnot(identical(length(diff_5), 1L))
278s > stopifnot(identical(length(diff_6), 1L))
278s > 
278s > ## Binary files
278s > set.seed(42)
278s > writeBin(as.raw((sample(0:255, 1000, replace = TRUE))),
278s +          con = file.path(path, "test.bin"))
278s > add(repo, "test.bin")
278s > diff_7 <- diff(repo, index = TRUE)
278s > diff(repo, as_char = TRUE)
278s [1] ""
278s > diff(repo, as_char = TRUE, filename = file.path(path, "test.diff"))
278s NULL
278s > 
278s > stopifnot(any(grepl("binary file", capture.output(summary(diff_7)))))
278s > 
278s > ## TODO: errors
278s > ## Check non-logical index argument
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, NULL, NULL, NULL, "FALSE",
278s +                         NULL, 3L, 0L, "a", "b", NULL, NULL, NULL))
278s > stopifnot(length(grep(paste0("Error in 'git2r_diff': 'index' must be logical ",
278s +                              "vector of length one with non NA value\n"),
278s +                       res[[1]]$message)) > 0)
278s > 
278s > ## Check various combinations of diff arguments
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, NULL, NULL,
278s +                         tree(commits(repo)[[1]]),
278s +                         FALSE, NULL, 3L, 0L, "a", "b", NULL, NULL, NULL))
278s > stopifnot(length(grep("Error in 'git2r_diff': Invalid diff parameters",
278s +                       res[[1]]$message)) > 0)
278s > 
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, NULL, NULL,
278s +                         tree(commits(repo)[[1]]),
278s +                         TRUE, NULL, 3L, 0L, "a", "b", NULL, NULL, NULL))
278s > stopifnot(length(grep("Error in 'git2r_diff': Invalid diff parameters",
278s +                       res[[1]]$message)) > 0)
278s > 
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, repo, tree(commits(repo)[[1]]),
278s +                         NULL, FALSE, NULL, 3L, 0L, "a", "b", NULL, NULL, NULL))
278s > stopifnot(length(grep("Error in 'git2r_diff': Invalid diff parameters",
278s +                       res[[1]]$message)) > 0)
278s > 
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, repo, tree(commits(repo)[[1]]),
278s +                         NULL, TRUE, NULL, 3L, 0L, "a", "b", NULL, NULL, NULL))
278s > stopifnot(length(grep("Error in 'git2r_diff': Invalid diff parameters",
278s +                       res[[1]]$message)) > 0)
278s > 
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, repo, tree(commits(repo)[[1]]),
278s +                         tree(commits(repo)[[2]]), FALSE, NULL, 3L, 0L, "a",
278s +                         "b", NULL, NULL, NULL))
278s > stopifnot(length(grep("Error in 'git2r_diff': Invalid diff parameters",
278s +                       res[[1]]$message)) > 0)
278s > 
278s > res <- tools::assertError(
278s +                   .Call(git2r:::git2r_diff, repo, tree(commits(repo)[[1]]),
278s +                         tree(commits(repo)[[2]]), TRUE, NULL, 3L, 0L, "a",
278s +                         "b", NULL, NULL, NULL))
278s > stopifnot(length(grep("Error in 'git2r_diff': Invalid diff parameters",
278s +                       res[[1]]$message)) > 0)
278s > 
278s > ## TODO: printing
278s > 
278s > ## Cleanup
278s > unlink(path, recursive = TRUE)
278s > 
278s BEGIN TEST fast_forward_merge.R
278s 
278s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
278s Copyright (C) 2024 The R Foundation for Statistical Computing
278s Platform: arm-unknown-linux-gnueabihf (32-bit)
278s 
278s R is free software and comes with ABSOLUTELY NO WARRANTY.
278s You are welcome to redistribute it under certain conditions.
278s Type 'license()' or 'licence()' for distribution details.
278s 
278s R is a collaborative project with many contributors.
278s Type 'contributors()' for more information and
278s 'citation()' on how to cite R or R packages in publications.
278s 
278s Type 'demo()' for some demos, 'help()' for on-line help, or
278s 'help.start()' for an HTML browser interface to help.
278s Type 'q()' to quit R.
278s 
278s > ## git2r, R bindings to the libgit2 library.
278s > ## Copyright (C) 2013-2023 The git2r contributors
278s > ##
278s > ## This program is free software; you can redistribute it and/or modify
278s > ## it under the terms of the GNU General Public License, version 2,
278s > ## as published by the Free Software Foundation.
278s > ##
278s > ## git2r is distributed in the hope that it will be useful,
278s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
278s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
278s > ## GNU General Public License for more details.
278s > ##
278s > ## You should have received a copy of the GNU General Public License along
278s > ## with this program; if not, write to the Free Software Foundation, Inc.,
278s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
278s > 
278s > library(git2r)
278s > 
278s > ## For debugging
278s > sessionInfo()
278s R version 4.3.3 (2024-02-29)
278s Platform: arm-unknown-linux-gnueabihf (32-bit)
278s Running under: Ubuntu Noble Numbat (development branch)
278s 
278s Matrix products: default
278s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
278s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
278s 
278s locale:
278s [1] C
278s 
278s time zone: Etc/UTC
278s tzcode source: system (glibc)
278s 
278s attached base packages:
278s [1] stats     graphics  grDevices utils     datasets  methods   base     
278s 
278s other attached packages:
278s [1] git2r_0.33.0
278s 
278s loaded via a namespace (and not attached):
278s [1] compiler_4.3.3
278s > libgit2_version()
278s $major
278s [1] 1
278s 
278s $minor
278s [1] 7
278s 
278s $rev
278s [1] 2
278s 
278s > libgit2_features()
278s $threads
278s [1] TRUE
278s 
278s $https
278s [1] TRUE
278s 
278s $ssh
278s [1] TRUE
278s 
278s > 
278s > 
278s > ## Create directory for repository in tempdir
278s > path <- tempfile(pattern = "git2r-")
278s > dir.create(path)
278s > 
278s > ## Create repository
278s > repo <- init(path, branch = "main")
278s > config(repo, user.name = "Alice", user.email = "alice@example.org")
278s > 
278s > ## Add changes to repo
278s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
278s +            con = file.path(path, "test-1.txt"))
278s > add(repo, "test-1.txt")
278s > commit_1 <- commit(repo, "First commit message")
278s > 
278s > ## Create branch and checkout
278s > checkout(branch_create(commit_1, name = "test"))
278s > 
278s > ## Add changes to test branch
278s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
278s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
278s +            con = file.path(path, "test-1.txt"))
278s > add(repo, "test-1.txt")
278s > commit_2 <- commit(repo, "Second commit message")
278s > 
278s > # Checkout main and merge
278s > b <- branches(repo)
278s > checkout(b[sapply(b, "[", "name") == "main"][[1]], force = TRUE)
278s > m <- merge(b[sapply(b, "[", "name") == "test"][[1]])
278s > 
278s > # Check merge
278s > stopifnot(inherits(m, "git_merge_result"))
278s > stopifnot(identical(m$up_to_date, FALSE))
278s > stopifnot(identical(m$fast_forward, TRUE))
278s > stopifnot(identical(m$conflicts, FALSE))
278s > stopifnot(identical(sha(m), NA_character_))
278s > stopifnot(identical(length(commits(repo)), 2L))
278s > 
278s > # Check reflog
278s > r <- reflog(repo)
278s > stopifnot(identical(r[[1]]$message, "merge test: Fast-forward"))
278s > 
278s > ## Cleanup
278s > unlink(path, recursive = TRUE)
278s > 
278s BEGIN TEST fetch.R
279s 
279s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
279s Copyright (C) 2024 The R Foundation for Statistical Computing
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s 
279s R is free software and comes with ABSOLUTELY NO WARRANTY.
279s You are welcome to redistribute it under certain conditions.
279s Type 'license()' or 'licence()' for distribution details.
279s 
279s R is a collaborative project with many contributors.
279s Type 'contributors()' for more information and
279s 'citation()' on how to cite R or R packages in publications.
279s 
279s Type 'demo()' for some demos, 'help()' for on-line help, or
279s 'help.start()' for an HTML browser interface to help.
279s Type 'q()' to quit R.
279s 
279s > ## git2r, R bindings to the libgit2 library.
279s > ## Copyright (C) 2013-2023 The git2r contributors
279s > ##
279s > ## This program is free software; you can redistribute it and/or modify
279s > ## it under the terms of the GNU General Public License, version 2,
279s > ## as published by the Free Software Foundation.
279s > ##
279s > ## git2r is distributed in the hope that it will be useful,
279s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
279s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
279s > ## GNU General Public License for more details.
279s > ##
279s > ## You should have received a copy of the GNU General Public License along
279s > ## with this program; if not, write to the Free Software Foundation, Inc.,
279s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
279s > 
279s > library(git2r)
279s > 
279s > ## For debugging
279s > sessionInfo()
279s R version 4.3.3 (2024-02-29)
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s Running under: Ubuntu Noble Numbat (development branch)
279s 
279s Matrix products: default
279s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
279s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
279s 
279s locale:
279s [1] C
279s 
279s time zone: Etc/UTC
279s tzcode source: system (glibc)
279s 
279s attached base packages:
279s [1] stats     graphics  grDevices utils     datasets  methods   base     
279s 
279s other attached packages:
279s [1] git2r_0.33.0
279s 
279s loaded via a namespace (and not attached):
279s [1] compiler_4.3.3
279s > libgit2_version()
279s $major
279s [1] 1
279s 
279s $minor
279s [1] 7
279s 
279s $rev
279s [1] 2
279s 
279s > libgit2_features()
279s $threads
279s [1] TRUE
279s 
279s $https
279s [1] TRUE
279s 
279s $ssh
279s [1] TRUE
279s 
279s > 
279s > 
279s > ## Create 2 directories in tempdir
279s > path_bare <- tempfile(pattern = "git2r-")
279s > path_repo_1 <- tempfile(pattern = "git2r-")
279s > path_repo_2 <- tempfile(pattern = "git2r-")
279s > 
279s > dir.create(path_bare)
279s > dir.create(path_repo_1)
279s > dir.create(path_repo_2)
279s > 
279s > ## Create repositories
279s > bare_repo <- init(path_bare, bare = TRUE)
279s > repo_1 <- clone(path_bare, path_repo_1)
279s cloning into '/tmp/RtmpiZwkhk/git2r-8797bb76b60'...
279s > repo_2 <- clone(path_bare, path_repo_2)
279s cloning into '/tmp/RtmpiZwkhk/git2r-87965451807'...
279s > 
279s > ## Config repositories
279s > config(repo_1, user.name = "Alice", user.email = "alice@example.org")
279s > config(repo_2, user.name = "Bob", user.email = "bob@example.org")
279s > 
279s > ## Add changes to repo 1
279s > writeLines("Hello world", con = file.path(path_repo_1, "test.txt"))
279s > add(repo_1, "test.txt")
279s > commit_1 <- commit(repo_1, "Commit message")
279s > branch_name <- branches(repo_1)[[1]]$name
279s > 
279s > ## Push changes from repo 1 to origin
279s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
279s > 
279s > ## Check result in bare repository
279s > stopifnot(identical(length(commits(bare_repo)), 1L))
279s > bare_commit_1 <- commits(bare_repo)[[1]]
279s > stopifnot(identical(sha(commit_1), sha(bare_commit_1)))
279s > stopifnot(identical(commit_1$author, bare_commit_1$author))
279s > stopifnot(identical(commit_1$committer, bare_commit_1$committer))
279s > stopifnot(identical(commit_1$summary, bare_commit_1$summary))
279s > stopifnot(identical(commit_1$message, bare_commit_1$message))
279s > stopifnot(!identical(commit_1$repo, bare_commit_1$repo))
279s > 
279s > ## Fetch
279s > fetch(repo_2, "origin")
279s [new]     98964b89b273b853793b refs/remotes/origin/master
279s > fh <- fetch_heads(repo_2)[[1]]
279s > stopifnot(identical(sha(fh), fh$sha))
279s > 
279s > ## Test show method of non-empty repository where head is null
279s > show(repo_2)
279s Local:    /tmp/RtmpiZwkhk/git2r-87965451807
279s Head:     nothing commited (yet)
279s > 
279s > ## Check that 'git2r_arg_check_credentials' raise error
279s > res <- tools::assertError(
279s +                   .Call(git2r:::git2r_remote_fetch, repo_1, "origin",
279s +                         3, "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", repo_1,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- cred_env(c("username", "username"), "password")
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- cred_env("username", c("password", "passowrd"))
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- cred_user_pass(c("username", "username"), "password")
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- cred_user_pass("username", c("password", "passowrd"))
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- cred_token(c("GITHUB_PAT", "GITHUB_PAT"))
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- structure(list(publickey  = c("id_rsa.pub", "id_rsa.pub"),
279s +                               privatekey = "id_rsa",
279s +                               passphrase = character(0)),
279s +                          class = "cred_ssh_key")
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- structure(list(publickey  = "id_rsa.pub",
279s +                               privatekey = c("id_rsa", "id_rsa"),
279s +                               passphrase = character(0)),
279s +                          class = "cred_ssh_key")
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- structure(list(publickey  = "id_rsa.pub",
279s +                               privatekey = "id_rsa",
279s +                               passphrase = NA_character_),
279s +                          class = "cred_ssh_key")
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > credentials <- structure(list(publickey  = "id_rsa.pub",
279s +                               privatekey = "id_rsa",
279s +                               passphrase = c("passphrase", "passphrase")),
279s +                          class = "cred_ssh_key")
279s > res <- tools::assertError(
279s +     .Call(git2r:::git2r_remote_fetch, repo_1, "origin", credentials,
279s +           "fetch", FALSE, NULL))
279s > stopifnot(length(grep("'credentials' must be an S3 class with credentials",
279s +                       res[[1]]$message)) > 0)
279s > 
279s > ## Cleanup
279s > unlink(path_bare, recursive = TRUE)
279s > unlink(path_repo_1, recursive = TRUE)
279s > unlink(path_repo_2, recursive = TRUE)
279s > 
279s BEGIN TEST graph.R
279s 
279s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
279s Copyright (C) 2024 The R Foundation for Statistical Computing
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s 
279s R is free software and comes with ABSOLUTELY NO WARRANTY.
279s You are welcome to redistribute it under certain conditions.
279s Type 'license()' or 'licence()' for distribution details.
279s 
279s R is a collaborative project with many contributors.
279s Type 'contributors()' for more information and
279s 'citation()' on how to cite R or R packages in publications.
279s 
279s Type 'demo()' for some demos, 'help()' for on-line help, or
279s 'help.start()' for an HTML browser interface to help.
279s Type 'q()' to quit R.
279s 
279s > ## git2r, R bindings to the libgit2 library.
279s > ## Copyright (C) 2013-2023 The git2r contributors
279s > ##
279s > ## This program is free software; you can redistribute it and/or modify
279s > ## it under the terms of the GNU General Public License, version 2,
279s > ## as published by the Free Software Foundation.
279s > ##
279s > ## git2r is distributed in the hope that it will be useful,
279s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
279s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
279s > ## GNU General Public License for more details.
279s > ##
279s > ## You should have received a copy of the GNU General Public License along
279s > ## with this program; if not, write to the Free Software Foundation, Inc.,
279s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
279s > 
279s > library("git2r")
279s > 
279s > ## For debugging
279s > sessionInfo()
279s R version 4.3.3 (2024-02-29)
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s Running under: Ubuntu Noble Numbat (development branch)
279s 
279s Matrix products: default
279s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
279s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
279s 
279s locale:
279s [1] C
279s 
279s time zone: Etc/UTC
279s tzcode source: system (glibc)
279s 
279s attached base packages:
279s [1] stats     graphics  grDevices utils     datasets  methods   base     
279s 
279s other attached packages:
279s [1] git2r_0.33.0
279s 
279s loaded via a namespace (and not attached):
279s [1] compiler_4.3.3
279s > libgit2_version()
279s $major
279s [1] 1
279s 
279s $minor
279s [1] 7
279s 
279s $rev
279s [1] 2
279s 
279s > libgit2_features()
279s $threads
279s [1] TRUE
279s 
279s $https
279s [1] TRUE
279s 
279s $ssh
279s [1] TRUE
279s 
279s > 
279s > 
279s > ## Create a directory in tempdir
279s > path <- tempfile(pattern = "git2r-")
279s > dir.create(path)
279s > 
279s > ## Initialize a repository
279s > repo <- init(path)
279s > config(repo, user.name = "Alice", user.email = "alice@example.org")
279s > 
279s > ## Create a file and commit
279s > writeLines("Hello world!", file.path(path, "test.txt"))
279s > add(repo, "test.txt")
279s > commit_1 <- commit(repo, "First commit message")
279s > tag_1 <- tag(repo, "Tagname1", "Tag message 1")
279s > 
279s > ## Change file and commit
279s > writeLines(c("Hello world!", "HELLO WORLD!"),
279s +            file.path(path, "test.txt"))
279s > add(repo, "test.txt")
279s > commit_2 <- commit(repo, "Second commit message")
279s > tag_2 <- tag(repo, "Tagname2", "Tag message 2")
279s > 
279s > ## Check ahead behind
279s > stopifnot(identical(ahead_behind(commit_1, commit_2), c(0L, 1L)))
279s > stopifnot(identical(ahead_behind(tag_1, tag_2), c(0L, 1L)))
279s > stopifnot(identical(ahead_behind(tag_2, tag_1), c(1L, 0L)))
279s > stopifnot(identical(ahead_behind(commit_1, branches(repo)[[1]]), c(0L, 1L)))
279s > stopifnot(identical(ahead_behind(branches(repo)[[1]], commit_1), c(1L, 0L)))
279s > 
279s > ## Cleanup
279s > unlink(path, recursive = TRUE)
279s > 
279s BEGIN TEST index.R
279s 
279s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
279s Copyright (C) 2024 The R Foundation for Statistical Computing
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s 
279s R is free software and comes with ABSOLUTELY NO WARRANTY.
279s You are welcome to redistribute it under certain conditions.
279s Type 'license()' or 'licence()' for distribution details.
279s 
279s R is a collaborative project with many contributors.
279s Type 'contributors()' for more information and
279s 'citation()' on how to cite R or R packages in publications.
279s 
279s Type 'demo()' for some demos, 'help()' for on-line help, or
279s 'help.start()' for an HTML browser interface to help.
279s Type 'q()' to quit R.
279s 
279s > ## git2r, R bindings to the libgit2 library.
279s > ## Copyright (C) 2013-2023 The git2r contributors
279s > ##
279s > ## This program is free software; you can redistribute it and/or modify
279s > ## it under the terms of the GNU General Public License, version 2,
279s > ## as published by the Free Software Foundation.
279s > ##
279s > ## git2r is distributed in the hope that it will be useful,
279s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
279s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
279s > ## GNU General Public License for more details.
279s > ##
279s > ## You should have received a copy of the GNU General Public License along
279s > ## with this program; if not, write to the Free Software Foundation, Inc.,
279s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
279s > 
279s > library(git2r)
279s > source("util/check.R")
279s > 
279s > ## For debugging
279s > sessionInfo()
279s R version 4.3.3 (2024-02-29)
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s Running under: Ubuntu Noble Numbat (development branch)
279s 
279s Matrix products: default
279s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
279s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
279s 
279s locale:
279s [1] C
279s 
279s time zone: Etc/UTC
279s tzcode source: system (glibc)
279s 
279s attached base packages:
279s [1] stats     graphics  grDevices utils     datasets  methods   base     
279s 
279s other attached packages:
279s [1] git2r_0.33.0
279s 
279s loaded via a namespace (and not attached):
279s [1] compiler_4.3.3
279s > libgit2_version()
279s $major
279s [1] 1
279s 
279s $minor
279s [1] 7
279s 
279s $rev
279s [1] 2
279s 
279s > libgit2_features()
279s $threads
279s [1] TRUE
279s 
279s $https
279s [1] TRUE
279s 
279s $ssh
279s [1] TRUE
279s 
279s > 
279s > 
279s > ## Create a directory in tempdir
279s > path <- tempfile(pattern = "git2r-")
279s > dir.create(path)
279s > 
279s > ## Initialize a repository
279s > repo <- init(path)
279s > config(repo, user.name = "Alice", user.email = "alice@example.org")
279s > 
279s > ## Create directories
279s > dir.create(file.path(path, "sub-folder"));
279s > dir.create(file.path(path, "sub-folder", "sub-sub-folder"));
279s > 
279s > ## Create files
279s > writeLines("Hello world!",
279s +            file.path(path, "file-1.txt"))
279s > writeLines("Hello world!",
279s +            file.path(path, "sub-folder", "file-2.txt"))
279s > writeLines("Hello world!",
279s +            file.path(path, "sub-folder", "file-3.txt"))
279s > writeLines("Hello world!",
279s +            file.path(path, "sub-folder", "sub-sub-folder", "file-4.txt"))
279s > writeLines("Hello world!",
279s +            file.path(path, "sub-folder", "sub-sub-folder", "file-5.txt"))
279s > 
279s > ## Add
279s > add(repo, "file-1.txt")
279s > status_exp <- structure(list(staged = list(new = "file-1.txt"),
279s +                              unstaged = empty_named_list(),
279s +                              untracked = list(untracked = "sub-folder/")),
279s +                         class = "git_status")
279s > status_obs <- status(repo)
279s > stopifnot(identical(status_obs, status_exp))
279s > 
279s > ## Index remove by path
279s > index_remove_bypath(repo, "file-1.txt")
279s > status_exp <- structure(list(staged = empty_named_list(),
279s +                              unstaged = empty_named_list(),
279s +                              untracked = list(untracked = "file-1.txt",
279s +                                               untracked = "sub-folder/")),
279s +                         class = "git_status")
279s > status_obs <- status(repo)
279s > stopifnot(identical(status_obs, status_exp))
279s > 
279s > ## Add
279s > add(repo, "sub-folder")
279s > status_exp <- structure(list(staged = list(
279s +                                  new = "sub-folder/file-2.txt",
279s +                                  new = "sub-folder/file-3.txt",
279s +                                  new = "sub-folder/sub-sub-folder/file-4.txt",
279s +                                  new = "sub-folder/sub-sub-folder/file-5.txt"),
279s +                              unstaged = empty_named_list(),
279s +                              untracked = list(untracked = "file-1.txt")),
279s +                         class = "git_status")
279s > status_obs <- status(repo)
279s > stopifnot(identical(status_obs, status_exp))
279s > 
279s > ## Commit
279s > commit(repo, "First commit message")
279s [a62082c] 2024-03-23: First commit message
279s > 
279s > ## It should fail to remove non-existing, untracked and ignored files
279s > tools::assertError(rm_file(repo, c("file-1.txt", "file-2.txt")))
279s > tools::assertError(rm_file(repo, c("file-1.txt", "")))
279s > tools::assertError(rm_file(repo, c("file-1.txt")))
279s > writeLines("/file-1.txt", file.path(path, ".gitignore"))
279s > tools::assertError(rm_file(repo, "file-1.txt"))
279s > 
279s > ## It should fail to remove files with staged changes
279s > file.remove(file.path(path, ".gitignore"))
279s [1] TRUE
279s > add(repo, "file-1.txt")
279s > tools::assertError(rm_file(repo, "file-1.txt"))
279s > 
279s > ## It should fail to remove files with unstaged changes
279s > commit(repo, "Second commit message")
279s [9e84700] 2024-03-23: Second commit message
279s > writeLines(c("Hello world!", "Hello world!"),
279s +            file.path(path, "file-1.txt"))
279s > tools::assertError(rm_file(repo, "file-1.txt"))
279s > 
279s > ## Remove file
279s > add(repo, "file-1.txt")
279s > commit(repo, "Third commit message")
279s [8494075] 2024-03-23: Third commit message
279s > rm_file(repo, "file-1.txt")
279s > status_exp <- structure(list(staged = list(deleted = "file-1.txt"),
279s +                              unstaged = empty_named_list(),
279s +                              untracked = empty_named_list()),
279s +                         class = "git_status")
279s > status_obs <- status(repo)
279s > stopifnot(identical(status_obs, status_exp))
279s > 
279s > ## Cleanup
279s > unlink(path, recursive = TRUE)
279s > 
279s BEGIN TEST invalid-conf-var.R
279s 
279s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
279s Copyright (C) 2024 The R Foundation for Statistical Computing
279s Platform: arm-unknown-linux-gnueabihf (32-bit)
279s 
279s R is free software and comes with ABSOLUTELY NO WARRANTY.
279s You are welcome to redistribute it under certain conditions.
279s Type 'license()' or 'licence()' for distribution details.
279s 
279s R is a collaborative project with many contributors.
279s Type 'contributors()' for more information and
279s 'citation()' on how to cite R or R packages in publications.
279s 
279s Type 'demo()' for some demos, 'help()' for on-line help, or
279s 'help.start()' for an HTML browser interface to help.
279s Type 'q()' to quit R.
279s 
279s > ## git2r, R bindings to the libgit2 library.
279s > ## Copyright (C) 2013-2023 The git2r contributors
279s > ##
279s > ## This program is free software; you can redistribute it and/or modify
279s > ## it under the terms of the GNU General Public License, version 2,
279s > ## as published by the Free Software Foundation.
279s > ##
279s > ## git2r is distributed in the hope that it will be useful,
279s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
279s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
279s > ## GNU General Public License for more details.
279s > ##
279s > ## You should have received a copy of the GNU General Public License along
279s > ## with this program; if not, write to the Free Software Foundation, Inc.,
279s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
279s > 
279s > library("git2r")
280s > 
280s > ## For debugging
280s > sessionInfo()
280s R version 4.3.3 (2024-02-29)
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s Running under: Ubuntu Noble Numbat (development branch)
280s 
280s Matrix products: default
280s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
280s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
280s 
280s locale:
280s [1] C
280s 
280s time zone: Etc/UTC
280s tzcode source: system (glibc)
280s 
280s attached base packages:
280s [1] stats     graphics  grDevices utils     datasets  methods   base     
280s 
280s other attached packages:
280s [1] git2r_0.33.0
280s 
280s loaded via a namespace (and not attached):
280s [1] compiler_4.3.3
280s > libgit2_version()
280s $major
280s [1] 1
280s 
280s $minor
280s [1] 7
280s 
280s $rev
280s [1] 2
280s 
280s > libgit2_features()
280s $threads
280s [1] TRUE
280s 
280s $https
280s [1] TRUE
280s 
280s $ssh
280s [1] TRUE
280s 
280s > 
280s > 
280s > ## Create a directory in tempdir
280s > path <- tempfile(pattern = "git2r-")
280s > dir.create(path)
280s > 
280s > ## Initialize a repository
280s > repo <- init(path)
280s > 
280s > ## Config repository
280s > config(repo, user.name = "Alice")
280s > 
280s > ## Let's set one valid and one with variable with invalid format
280s > res <- tools::assertWarning(config(repo,
280s +                                    user.email = "alice@example.org",
280s +                                    lol = "wut"))
280s > stopifnot(length(grep("Variable was not in a valid format: 'lol'",
280s +                       res[[1]]$message)) > 0)
280s > 
280s > cfg_exp <- structure(list(user.name = "Alice",
280s +                           user.email = "alice@example.org",
280s +                           "NA" = NULL),
280s +                      .Names = c("user.name", "user.email", NA))
280s > 
280s > cfg_obs <- config(repo)$local
280s > cfg_obs <- cfg_obs[c("user.name", "user.email", "lol")]
280s > stopifnot(identical(cfg_obs, cfg_exp))
280s > 
280s > ## Cleanup
280s > unlink(path, recursive = TRUE)
280s > 
280s BEGIN TEST libgit2.R
280s 
280s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
280s Copyright (C) 2024 The R Foundation for Statistical Computing
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s 
280s R is free software and comes with ABSOLUTELY NO WARRANTY.
280s You are welcome to redistribute it under certain conditions.
280s Type 'license()' or 'licence()' for distribution details.
280s 
280s R is a collaborative project with many contributors.
280s Type 'contributors()' for more information and
280s 'citation()' on how to cite R or R packages in publications.
280s 
280s Type 'demo()' for some demos, 'help()' for on-line help, or
280s 'help.start()' for an HTML browser interface to help.
280s Type 'q()' to quit R.
280s 
280s > ## git2r, R bindings to the libgit2 library.
280s > ## Copyright (C) 2013-2023 The git2r contributors
280s > ##
280s > ## This program is free software; you can redistribute it and/or modify
280s > ## it under the terms of the GNU General Public License, version 2,
280s > ## as published by the Free Software Foundation.
280s > ##
280s > ## git2r is distributed in the hope that it will be useful,
280s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
280s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
280s > ## GNU General Public License for more details.
280s > ##
280s > ## You should have received a copy of the GNU General Public License along
280s > ## with this program; if not, write to the Free Software Foundation, Inc.,
280s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
280s > 
280s > library("git2r")
280s > 
280s > ## For debugging
280s > sessionInfo()
280s R version 4.3.3 (2024-02-29)
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s Running under: Ubuntu Noble Numbat (development branch)
280s 
280s Matrix products: default
280s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
280s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
280s 
280s locale:
280s [1] C
280s 
280s time zone: Etc/UTC
280s tzcode source: system (glibc)
280s 
280s attached base packages:
280s [1] stats     graphics  grDevices utils     datasets  methods   base     
280s 
280s other attached packages:
280s [1] git2r_0.33.0
280s 
280s loaded via a namespace (and not attached):
280s [1] compiler_4.3.3
280s > libgit2_version()
280s $major
280s [1] 1
280s 
280s $minor
280s [1] 7
280s 
280s $rev
280s [1] 2
280s 
280s > libgit2_features()
280s $threads
280s [1] TRUE
280s 
280s $https
280s [1] TRUE
280s 
280s $ssh
280s [1] TRUE
280s 
280s > 
280s > 
280s > stopifnot(identical(names(libgit2_features()),
280s +                     c("threads", "https", "ssh")))
280s > 
280s > stopifnot(identical(names(libgit2_version()),
280s +                     c("major", "minor", "rev")))
280s > 
280s > tools::assertError(ssl_cert_locations())
280s > 
280s > if (identical(Sys.getenv("R_COVR"), "true")) {
280s +     if (isTRUE(libgit2_features()$https)) {
280s +         ## Create a directory in tempdir
280s +         path <- tempfile(pattern = "git2r-")
280s +         dir.create(path)
280s +         stopifnot(is.null(ssl_cert_locations(path = path)))
280s +         unlink(path)
280s +     }
280s + }
280s > 
280s BEGIN TEST ls_tree.R
280s 
280s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
280s Copyright (C) 2024 The R Foundation for Statistical Computing
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s 
280s R is free software and comes with ABSOLUTELY NO WARRANTY.
280s You are welcome to redistribute it under certain conditions.
280s Type 'license()' or 'licence()' for distribution details.
280s 
280s R is a collaborative project with many contributors.
280s Type 'contributors()' for more information and
280s 'citation()' on how to cite R or R packages in publications.
280s 
280s Type 'demo()' for some demos, 'help()' for on-line help, or
280s 'help.start()' for an HTML browser interface to help.
280s Type 'q()' to quit R.
280s 
280s > ## git2r, R bindings to the libgit2 library.
280s > ## Copyright (C) 2013-2023 The git2r contributors
280s > ##
280s > ## This program is free software; you can redistribute it and/or modify
280s > ## it under the terms of the GNU General Public License, version 2,
280s > ## as published by the Free Software Foundation.
280s > ##
280s > ## git2r is distributed in the hope that it will be useful,
280s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
280s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
280s > ## GNU General Public License for more details.
280s > ##
280s > ## You should have received a copy of the GNU General Public License along
280s > ## with this program; if not, write to the Free Software Foundation, Inc.,
280s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
280s > 
280s > library("git2r")
280s > 
280s > ## For debugging
280s > sessionInfo()
280s R version 4.3.3 (2024-02-29)
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s Running under: Ubuntu Noble Numbat (development branch)
280s 
280s Matrix products: default
280s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
280s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
280s 
280s locale:
280s [1] C
280s 
280s time zone: Etc/UTC
280s tzcode source: system (glibc)
280s 
280s attached base packages:
280s [1] stats     graphics  grDevices utils     datasets  methods   base     
280s 
280s other attached packages:
280s [1] git2r_0.33.0
280s 
280s loaded via a namespace (and not attached):
280s [1] compiler_4.3.3
280s > libgit2_version()
280s $major
280s [1] 1
280s 
280s $minor
280s [1] 7
280s 
280s $rev
280s [1] 2
280s 
280s > libgit2_features()
280s $threads
280s [1] TRUE
280s 
280s $https
280s [1] TRUE
280s 
280s $ssh
280s [1] TRUE
280s 
280s > 
280s > 
280s > ## Initialize a temporary repository
280s > path <- tempfile(pattern = "git2r-")
280s > dir.create(path)
280s > dir.create(file.path(path, "subfolder"))
280s > repo <- init(path)
280s > 
280s > ## Create a user
280s > config(repo, user.name = "Alice", user.email = "alice@example.org")
280s > 
280s > ## Create three files and commit
280s > writeLines("First file",  file.path(path, "example-1.txt"))
280s > writeLines("Second file", file.path(path, "subfolder/example-2.txt"))
280s > writeLines("Third file",  file.path(path, "example-3.txt"))
280s > add(repo, c("example-1.txt", "subfolder/example-2.txt", "example-3.txt"))
280s > commit(repo, "Commit message")
280s [e1679ee] 2024-03-23: Commit message
280s > 
280s > ## Traverse tree entries and its subtrees.
280s > ## Various approaches that give identical result.
280s > stopifnot(identical(ls_tree(tree = tree(last_commit(path))),
280s +                     ls_tree(tree = tree(last_commit(repo)))))
280s > stopifnot(identical(ls_tree(repo = path), ls_tree(repo = repo)))
280s > 
280s > ## ls_tree(repo = repo) should match `git ls-tree -lr HEAD`
280s > ls_tree_result <- ls_tree(repo = repo)
280s > stopifnot(identical(ls_tree_result$name,
280s +                     c("example-1.txt", "example-3.txt", "example-2.txt")))
280s > 
280s > # Argument `tree` can be a  'character that identifies a tree in the repository'
280s > ls_tree(tree = tree(last_commit(path))$sha, repo = repo)
280s     mode type                                      sha       path          name
280s 1 100644 blob 4c5fd919d52e3c1b08f7924cfa05d6de100912fd            example-1.txt
280s 2 100644 blob f89598da398eb016c504a5e272cb3eb1a31e2687            example-3.txt
280s 3 100644 blob 20d5b672a347112783818b3fc8cc7cd66ade3008 subfolder/ example-2.txt
280s   len
280s 1  11
280s 2  11
280s 3  12
280s > 
280s > ## Skip content in subfolder
280s > ls_tree_toplevel <- ls_tree(repo = repo, recursive = FALSE)
280s > stopifnot(nrow(ls_tree_toplevel) == 3)
280s > stopifnot(identical(ls_tree_toplevel$name,
280s +                     c("example-1.txt", "example-3.txt", "subfolder")))
280s > 
280s > ## Start in subfolder
280s > ls_tree_subfolder <- ls_tree(tree = "HEAD:subfolder", repo = repo)
280s > stopifnot(nrow(ls_tree_subfolder) == 1)
280s > stopifnot(identical(ls_tree_subfolder$name, "example-2.txt"))
280s > 
280s > ## Cleanup
280s > unlink(path, recursive = TRUE)
280s > 
280s BEGIN TEST merge.R
280s 
280s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
280s Copyright (C) 2024 The R Foundation for Statistical Computing
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s 
280s R is free software and comes with ABSOLUTELY NO WARRANTY.
280s You are welcome to redistribute it under certain conditions.
280s Type 'license()' or 'licence()' for distribution details.
280s 
280s R is a collaborative project with many contributors.
280s Type 'contributors()' for more information and
280s 'citation()' on how to cite R or R packages in publications.
280s 
280s Type 'demo()' for some demos, 'help()' for on-line help, or
280s 'help.start()' for an HTML browser interface to help.
280s Type 'q()' to quit R.
280s 
280s > ## git2r, R bindings to the libgit2 library.
280s > ## Copyright (C) 2013-2023 The git2r contributors
280s > ##
280s > ## This program is free software; you can redistribute it and/or modify
280s > ## it under the terms of the GNU General Public License, version 2,
280s > ## as published by the Free Software Foundation.
280s > ##
280s > ## git2r is distributed in the hope that it will be useful,
280s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
280s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
280s > ## GNU General Public License for more details.
280s > ##
280s > ## You should have received a copy of the GNU General Public License along
280s > ## with this program; if not, write to the Free Software Foundation, Inc.,
280s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
280s > 
280s > library(git2r)
280s > source("util/check.R")
280s > 
280s > ## For debugging
280s > sessionInfo()
280s R version 4.3.3 (2024-02-29)
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s Running under: Ubuntu Noble Numbat (development branch)
280s 
280s Matrix products: default
280s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
280s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
280s 
280s locale:
280s [1] C
280s 
280s time zone: Etc/UTC
280s tzcode source: system (glibc)
280s 
280s attached base packages:
280s [1] stats     graphics  grDevices utils     datasets  methods   base     
280s 
280s other attached packages:
280s [1] git2r_0.33.0
280s 
280s loaded via a namespace (and not attached):
280s [1] compiler_4.3.3
280s > libgit2_version()
280s $major
280s [1] 1
280s 
280s $minor
280s [1] 7
280s 
280s $rev
280s [1] 2
280s 
280s > libgit2_features()
280s $threads
280s [1] TRUE
280s 
280s $https
280s [1] TRUE
280s 
280s $ssh
280s [1] TRUE
280s 
280s > 
280s > 
280s > ## Create a directory in tempdir
280s > path <- tempfile(pattern = "git2r-")
280s > dir.create(path)
280s > 
280s > ## Initialize a repository
280s > repo <- init(path, branch = "main")
280s > config(repo, user.name = "Alice", user.email = "alice@example.org")
280s > 
280s > ## Create a file, add and commit
280s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
280s +            con = file.path(path, "test.txt"))
280s > add(repo, "test.txt")
280s > commit_1 <- commit(repo, "Commit message 1")
280s > 
280s > ## Create first branch, checkout, add file and commit
280s > b_1 <- branch_create(commit_1, "branch1")
280s > checkout(b_1)
280s > writeLines("Branch 1", file.path(path, "branch-1.txt"))
280s > add(repo, "branch-1.txt")
280s > commit_2 <- commit(repo, "Commit message branch 1")
280s > 
280s > ## Create second branch, checkout, add file and commit
280s > b_2 <- branch_create(commit_1, "branch2")
280s > checkout(b_2)
280s > writeLines("Branch 2", file.path(path, "branch-2.txt"))
280s > add(repo, "branch-2.txt")
280s > commit_3 <- commit(repo, "Commit message branch 2")
280s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
280s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
280s +            con = file.path(path, "test.txt"))
280s > add(repo, "test.txt")
280s > commit_4 <- commit(repo, "Second commit message branch 2")
280s > 
280s > ## Check that merge base equals commit_1
280s > stopifnot(identical(merge_base(commit_2, commit_3), commit_1))
280s > 
280s > ## Checkout main
280s > b <- branches(repo)
280s > checkout(b[sapply(b, "[", "name") == "main"][[1]], force = TRUE)
280s > 
280s > ## Merge branch 1
280s > m_1 <- merge(b[sapply(b, "[", "name") == "branch1"][[1]])
280s > stopifnot(identical(m_1$fast_forward, TRUE))
280s > stopifnot(identical(m_1$conflicts, FALSE))
280s > stopifnot(identical(sha(m_1), NA_character_))
280s > stopifnot(identical(print(m_1), m_1))
280s Merge: Fast-forward
280s > 
280s > ## Merge branch 1 again
280s > m_1_again <- merge(b[sapply(b, "[", "name") == "branch1"][[1]])
280s > stopifnot(identical(m_1_again$up_to_date, TRUE))
280s > stopifnot(identical(m_1_again$fast_forward, FALSE))
280s > stopifnot(identical(m_1_again$conflicts, FALSE))
280s > stopifnot(identical(sha(m_1_again), NA_character_))
280s > 
280s > ## Merge branch 2
280s > m_2 <- merge(b[sapply(b, "[", "name") == "branch2"][[1]])
280s > stopifnot(identical(m_2$fast_forward, FALSE))
280s > stopifnot(identical(m_2$conflicts, FALSE))
280s > stopifnot(identical(sha(m_2), sha(commits(repo)[[1]])))
280s > 
280s > ## Create third branch, checkout, change file and commit
280s > b_3 <- branch_create(lookup(repo, sha(m_2)), "branch3")
280s > checkout(b_3)
280s > writeLines(c("Lorem ipsum dolor amet sit, consectetur adipisicing elit, sed do",
280s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
280s +            con = file.path(path, "test.txt"))
280s > add(repo, "test.txt")
280s > commit(repo, "Commit message branch 3")
280s [cebeece] 2024-03-23: Commit message branch 3
280s > 
280s > ## Checkout main and create a change that creates a conflict on
280s > ## merge
280s > b <- branches(repo)
280s > checkout(b[sapply(b, "[", "name") == "main"][[1]], force = TRUE)
280s > writeLines(c("Lorem ipsum dolor sit amet, adipisicing consectetur elit, sed do",
280s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
280s +            con = file.path(path, "test.txt"))
280s > add(repo, "test.txt")
280s > commit(repo, "Some commit message branch 1")
280s [c48cdeb] 2024-03-23: Some commit message branch 1
280s > 
280s > ## Merge branch 3 with fail = TRUE
280s > m_3 <- merge(b[sapply(b, "[", "name") == "branch3"][[1]], fail = TRUE)
280s > stopifnot(identical(m_3$up_to_date, FALSE))
280s > stopifnot(identical(m_3$fast_forward, FALSE))
280s > stopifnot(identical(m_3$conflicts, TRUE))
280s > stopifnot(identical(sha(m_3), NA_character_))
280s > m_3
280s Merge: Conflicts
280s > 
280s > ## Check status; Expect to have a clean working directory
280s > wd <- structure(list(staged = empty_named_list(),
280s +                      unstaged = empty_named_list(),
280s +                      untracked = empty_named_list()),
280s +                 class = "git_status")
280s > stopifnot(identical(status(repo), wd))
280s > 
280s > ## Merge branch 3
280s > m_3 <- merge(b[sapply(b, "[", "name") == "branch3"][[1]])
280s > stopifnot(identical(m_3$up_to_date, FALSE))
280s > stopifnot(identical(m_3$fast_forward, FALSE))
280s > stopifnot(identical(m_3$conflicts, TRUE))
280s > stopifnot(identical(sha(m_3), NA_character_))
280s > m_3
280s Merge: Conflicts
280s > 
280s > ## Check status; Expect to have one unstaged unmerged conflict.
280s > stopifnot(identical(status(repo),
280s +                     structure(list(staged = empty_named_list(),
280s +                                    unstaged = list(conflicted = "test.txt"),
280s +                                    untracked = empty_named_list()),
280s +                               class = "git_status")))
280s > 
280s > ## Cleanup
280s > unlink(path, recursive = TRUE)
280s > 
280s BEGIN TEST merge_named_branch.R
280s 
280s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
280s Copyright (C) 2024 The R Foundation for Statistical Computing
280s Platform: arm-unknown-linux-gnueabihf (32-bit)
280s 
280s R is free software and comes with ABSOLUTELY NO WARRANTY.
280s You are welcome to redistribute it under certain conditions.
280s Type 'license()' or 'licence()' for distribution details.
280s 
280s R is a collaborative project with many contributors.
280s Type 'contributors()' for more information and
280s 'citation()' on how to cite R or R packages in publications.
280s 
280s Type 'demo()' for some demos, 'help()' for on-line help, or
280s 'help.start()' for an HTML browser interface to help.
280s Type 'q()' to quit R.
280s 
281s > ## git2r, R bindings to the libgit2 library.
281s > ## Copyright (C) 2013-2023 The git2r contributors
281s > ##
281s > ## This program is free software; you can redistribute it and/or modify
281s > ## it under the terms of the GNU General Public License, version 2,
281s > ## as published by the Free Software Foundation.
281s > ##
281s > ## git2r is distributed in the hope that it will be useful,
281s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
281s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
281s > ## GNU General Public License for more details.
281s > ##
281s > ## You should have received a copy of the GNU General Public License along
281s > ## with this program; if not, write to the Free Software Foundation, Inc.,
281s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
281s > 
281s > library(git2r)
281s > source("util/check.R")
281s > 
281s > ## For debugging
281s > sessionInfo()
281s R version 4.3.3 (2024-02-29)
281s Platform: arm-unknown-linux-gnueabihf (32-bit)
281s Running under: Ubuntu Noble Numbat (development branch)
281s 
281s Matrix products: default
281s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
281s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
281s 
281s locale:
281s [1] C
281s 
281s time zone: Etc/UTC
281s tzcode source: system (glibc)
281s 
281s attached base packages:
281s [1] stats     graphics  grDevices utils     datasets  methods   base     
281s 
281s other attached packages:
281s [1] git2r_0.33.0
281s 
281s loaded via a namespace (and not attached):
281s [1] compiler_4.3.3
281s > libgit2_version()
281s $major
281s [1] 1
281s 
281s $minor
281s [1] 7
281s 
281s $rev
281s [1] 2
281s 
281s > libgit2_features()
281s $threads
281s [1] TRUE
281s 
281s $https
281s [1] TRUE
281s 
281s $ssh
281s [1] TRUE
281s 
281s > 
281s > 
281s > ## Create a directory in tempdir
281s > path <- tempfile(pattern = "git2r-")
281s > dir.create(path)
281s > 
281s > ## Initialize a repository
281s > repo <- init(path, branch = "main")
281s > config(repo, user.name = "Alice", user.email = "alice@example.org")
281s > 
281s > ## Create a file, add and commit
281s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
281s +            con = file.path(path, "test.txt"))
281s > add(repo, "test.txt")
281s > commit_1 <- commit(repo, "Commit message 1")
281s > 
281s > ## Create first branch, checkout, add file and commit
281s > checkout(repo, "branch1", create = TRUE)
281s > writeLines("Branch 1", file.path(path, "branch-1.txt"))
281s > add(repo, "branch-1.txt")
281s > commit_2 <- commit(repo, "Commit message branch 1")
281s > 
281s > ## Create second branch, checkout, add file and commit
281s > b_2 <- branch_create(commit_1, "branch2")
281s > checkout(b_2)
281s > writeLines("Branch 2", file.path(path, "branch-2.txt"))
281s > add(repo, "branch-2.txt")
281s > commit_3 <- commit(repo, "Commit message branch 2")
281s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
281s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
281s +            con = file.path(path, "test.txt"))
281s > add(repo, "test.txt")
281s > commit_4 <- commit(repo, "Second commit message branch 2")
281s > 
281s > ## Check that merge base equals commit_1
281s > stopifnot(identical(merge_base(commit_2, commit_3), commit_1))
281s > 
281s > ## Checkout main
281s > b <- branches(repo)
281s > checkout(b[sapply(b, "[", "name") == "main"][[1]], force = TRUE)
281s > 
281s > ## Merge branch 1
281s > m_1 <- merge(repo, "branch1")
281s > stopifnot(identical(m_1$fast_forward, TRUE))
281s > stopifnot(identical(m_1$conflicts, FALSE))
281s > stopifnot(identical(sha(m_1), NA_character_))
281s > 
281s > ## Merge branch 2
281s > m_2 <- merge(path, "branch2")
281s > stopifnot(identical(m_2$fast_forward, FALSE))
281s > stopifnot(identical(m_2$conflicts, FALSE))
281s > stopifnot(identical(sha(m_2), sha(commits(repo)[[1]])))
281s > 
281s > ## Create third branch, checkout, change file and commit
281s > checkout(repo, "branch3", create = TRUE)
281s > writeLines(c("Lorem ipsum dolor amet sit, consectetur adipisicing elit, sed do",
281s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
281s +            con = file.path(path, "test.txt"))
281s > add(repo, "test.txt")
281s > commit(repo, "Commit message branch 3")
281s [27ac5be] 2024-03-23: Commit message branch 3
281s > 
281s > ## Checkout main and create a change that creates a merge conflict
281s > checkout(repo, "main", force = TRUE)
281s > writeLines(c("Lorem ipsum dolor sit amet, adipisicing consectetur elit, sed do",
281s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
281s +            con = file.path(path, "test.txt"))
281s > add(repo, "test.txt")
281s > commit(repo, "Some commit message branch 1")
281s [e9e20b4] 2024-03-23: Some commit message branch 1
281s > 
281s > ## Merge branch 3
281s > m_3 <- merge(repo, "branch3")
281s > stopifnot(identical(m_3$up_to_date, FALSE))
281s > stopifnot(identical(m_3$fast_forward, FALSE))
281s > stopifnot(identical(m_3$conflicts, TRUE))
281s > stopifnot(identical(sha(m_3), NA_character_))
281s > 
281s > ## Check status; Expect to have one unstaged unmerged conflict.
281s > stopifnot(identical(status(repo),
281s +                     structure(list(staged = empty_named_list(),
281s +                                    unstaged = list(conflicted = "test.txt"),
281s +                                    untracked = empty_named_list()),
281s +                               class = "git_status")))
281s > 
281s > ## Cleanup
281s > unlink(path, recursive = TRUE)
281s > 
281s BEGIN TEST normal_merge.R
281s 
281s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
281s Copyright (C) 2024 The R Foundation for Statistical Computing
281s Platform: arm-unknown-linux-gnueabihf (32-bit)
281s 
281s R is free software and comes with ABSOLUTELY NO WARRANTY.
281s You are welcome to redistribute it under certain conditions.
281s Type 'license()' or 'licence()' for distribution details.
281s 
281s R is a collaborative project with many contributors.
281s Type 'contributors()' for more information and
281s 'citation()' on how to cite R or R packages in publications.
281s 
281s Type 'demo()' for some demos, 'help()' for on-line help, or
281s 'help.start()' for an HTML browser interface to help.
281s Type 'q()' to quit R.
281s 
281s > ## git2r, R bindings to the libgit2 library.
281s > ## Copyright (C) 2013-2023 The git2r contributors
281s > ##
281s > ## This program is free software; you can redistribute it and/or modify
281s > ## it under the terms of the GNU General Public License, version 2,
281s > ## as published by the Free Software Foundation.
281s > ##
281s > ## git2r is distributed in the hope that it will be useful,
281s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
281s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
281s > ## GNU General Public License for more details.
281s > ##
281s > ## You should have received a copy of the GNU General Public License along
281s > ## with this program; if not, write to the Free Software Foundation, Inc.,
281s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
281s > 
281s > library(git2r)
281s > 
281s > ## For debugging
281s > sessionInfo()
281s R version 4.3.3 (2024-02-29)
281s Platform: arm-unknown-linux-gnueabihf (32-bit)
281s Running under: Ubuntu Noble Numbat (development branch)
281s 
281s Matrix products: default
281s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
281s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
281s 
281s locale:
281s [1] C
281s 
281s time zone: Etc/UTC
281s tzcode source: system (glibc)
281s 
281s attached base packages:
281s [1] stats     graphics  grDevices utils     datasets  methods   base     
281s 
281s other attached packages:
281s [1] git2r_0.33.0
281s 
281s loaded via a namespace (and not attached):
281s [1] compiler_4.3.3
281s > libgit2_version()
281s $major
281s [1] 1
281s 
281s $minor
281s [1] 7
281s 
281s $rev
281s [1] 2
281s 
281s > libgit2_features()
281s $threads
281s [1] TRUE
281s 
281s $https
281s [1] TRUE
281s 
281s $ssh
281s [1] TRUE
281s 
281s > 
281s > 
281s > ## Initialize a temporary repository
281s > path <- tempfile(pattern = "git2r-")
281s > dir.create(path)
281s > repo <- init(path, branch = "main")
281s > 
281s > ## Create a user and commit a file
281s > config(repo, user.name = "Author", user.email = "author@example.org")
281s > writeLines(c("First line in file 1.", "Second line in file 1."),
281s +            file.path(path, "example-1.txt"))
281s > add(repo, "example-1.txt")
281s > commit(repo, "First commit message")
281s [b565b7b] 2024-03-23: First commit message
281s > 
281s > ## Create and add one more file
281s > writeLines(c("First line in file 2.", "Second line in file 2."),
281s +            file.path(path, "example-2.txt"))
281s > add(repo, "example-2.txt")
281s > commit(repo, "Second commit message")
281s [dfe76e7] 2024-03-23: Second commit message
281s > 
281s > ## Create a new branch 'fix'
281s > checkout(repo, "fix", create = TRUE)
281s > 
281s > ## Update 'example-1.txt' (swap words in first line) and commit
281s > writeLines(c("line First in file 1.", "Second line in file 1."),
281s +            file.path(path, "example-1.txt"))
281s > add(repo, "example-1.txt")
281s > commit(repo, "Third commit message")
281s [2f1a2d8] 2024-03-23: Third commit message
281s > 
281s > checkout(repo, "main")
281s > 
281s > ## Update 'example-2.txt' (swap words in second line) and commit
281s > writeLines(c("First line in file 2.", "line Second in file 2."),
281s +            file.path(path, "example-2.txt"))
281s > add(repo, "example-2.txt")
281s > commit(repo, "Fourth commit message")
281s [7f5f79b] 2024-03-23: Fourth commit message
281s > 
281s > # Missing branch to merge with should throw an error
281s > tools::assertError(merge(repo))
281s > 
281s > ## Merge 'fix'
281s > m <- merge(repo, "fix", TRUE, default_signature(repo))
281s > stopifnot(identical(format(m), "Merge"))
281s > 
281s > ## Merge 'fix' again
281s > m <- merge(repo, "fix", TRUE, default_signature(repo))
281s > stopifnot(identical(format(m), "Already up-to-date"))
281s > 
281s > ## Check number of parents of each commit
281s > stopifnot(identical(sapply(commits(repo), function(x) length(parents(x))),
281s +                     c(2L, 1L, 1L, 1L, 0L)))
281s > 
281s > ## Check that last commit is a merge
281s > stopifnot(is_merge(last_commit(repo)))
281s > summary(last_commit(repo))
281s Commit:  3c3b18f4ea1523257cd3e6da4044c5cf18d7b0e7
281s Merge:   7f5f79ba39697ff9a5603649628a774dbe7cb48b
281s          2f1a2d8f3e332ad972615e8dd29219482d1d0794
281s Author:  Author <author@example.org>
281s When:    2024-03-23 01:14:59 GMT
281s 
281s      merge fix
281s 
281s Commit message:  7f5f79ba39697ff9a5603649628a774dbe7cb48b 
281s      Fourth commit message
281s  
281s Commit message:  2f1a2d8f3e332ad972615e8dd29219482d1d0794 
281s      Third commit message
281s  
281s > 
281s > ## Check that metadata associated with merge is removed
281s > stopifnot(!file.exists(file.path(path, ".git", "MERGE_HEAD")))
281s > 
281s > ## Cleanup
281s > unlink(path, recursive = TRUE)
281s > 
281s BEGIN TEST note.R
281s 
281s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
281s Copyright (C) 2024 The R Foundation for Statistical Computing
281s Platform: arm-unknown-linux-gnueabihf (32-bit)
281s 
281s R is free software and comes with ABSOLUTELY NO WARRANTY.
281s You are welcome to redistribute it under certain conditions.
281s Type 'license()' or 'licence()' for distribution details.
281s 
281s R is a collaborative project with many contributors.
281s Type 'contributors()' for more information and
281s 'citation()' on how to cite R or R packages in publications.
281s 
281s Type 'demo()' for some demos, 'help()' for on-line help, or
281s 'help.start()' for an HTML browser interface to help.
281s Type 'q()' to quit R.
281s 
281s > ## git2r, R bindings to the libgit2 library.
281s > ## Copyright (C) 2013-2023 The git2r contributors
281s > ##
281s > ## This program is free software; you can redistribute it and/or modify
281s > ## it under the terms of the GNU General Public License, version 2,
281s > ## as published by the Free Software Foundation.
281s > ##
281s > ## git2r is distributed in the hope that it will be useful,
281s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
281s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
281s > ## GNU General Public License for more details.
281s > ##
281s > ## You should have received a copy of the GNU General Public License along
281s > ## with this program; if not, write to the Free Software Foundation, Inc.,
281s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
281s > 
281s > library("git2r")
281s > 
281s > ## For debugging
281s > sessionInfo()
281s R version 4.3.3 (2024-02-29)
281s Platform: arm-unknown-linux-gnueabihf (32-bit)
281s Running under: Ubuntu Noble Numbat (development branch)
281s 
281s Matrix products: default
281s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
281s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
281s 
281s locale:
281s [1] C
281s 
281s time zone: Etc/UTC
281s tzcode source: system (glibc)
281s 
281s attached base packages:
281s [1] stats     graphics  grDevices utils     datasets  methods   base     
281s 
281s other attached packages:
281s [1] git2r_0.33.0
281s 
281s loaded via a namespace (and not attached):
281s [1] compiler_4.3.3
281s > libgit2_version()
281s $major
281s [1] 1
281s 
281s $minor
281s [1] 7
281s 
281s $rev
281s [1] 2
281s 
281s > libgit2_features()
281s $threads
281s [1] TRUE
281s 
281s $https
281s [1] TRUE
281s 
281s $ssh
281s [1] TRUE
281s 
281s > 
281s > 
281s > ## Create a directory in tempdir
281s > path <- tempfile(pattern = "git2r-")
281s > dir.create(path)
281s > 
281s > ## Initialize a repository
281s > repo <- init(path)
281s > config(repo, user.name = "Alice", user.email = "alice@example.org")
281s > 
281s > ## Create a file, add and commit
281s > writeLines("Hello world!", file.path(path, "test.txt"))
281s > add(repo, "test.txt")
281s > commit_1 <- commit(repo, "Commit message 1")
281s > 
281s > ## Create another commit
281s > writeLines(c("Hello world!",
281s +              "HELLO WORLD!"),
281s +            file.path(path, "test.txt"))
281s > add(repo, "test.txt")
281s > commit_2 <- commit(repo, "Commit message 2")
281s > 
281s > ## Check default ref
281s > stopifnot(identical(note_default_ref(repo),
281s +                     "refs/notes/commits"))
281s > 
281s > ## Check that an invalid object argument in note_create produce an
281s > ## error.
281s > tools::assertError(note_create(object = NULL, message = "test"))
281s > tools::assertError(note_create(object = 1, message = "test"))
281s > 
281s > ## Check that notes is an empty list
281s > stopifnot(identical(notes(repo), list()))
281s > 
281s > ## Create note in default namespace
281s > note_1 <- note_create(commit_1, "Note-1")
281s > stopifnot(identical(print(note_1), note_1))
281s note:  a801dfb10a85d13bc8ab304a9255b5cf180f94dd
281s > stopifnot(identical(length(notes(repo)), 1L))
281s > stopifnot(identical(sha(note_1), note_1$sha))
281s > tools::assertError(note_create(commit_1, "Note-2"))
281s > note_2 <- note_create(commit_1, "Note-2", force = TRUE)
281s > stopifnot(identical(length(notes(repo)), 1L))
281s > 
281s > ## Check that an invalid note argument in note_remove produce an
281s > ## error.
281s > tools::assertError(note_remove(note = 1))
281s > 
281s > ## Create note in named (review) namespace
281s > note_3 <- note_create(commit_1, "Note-3", ref = "refs/notes/review")
281s > note_4 <- note_create(commit_2, "Note-4", ref = "refs/notes/review")
281s > stopifnot(identical(length(notes(repo, ref = "refs/notes/review")), 2L))
281s > note_remove(note_3)
281s > note_remove(note_4)
281s > stopifnot(identical(notes(repo, ref = "refs/notes/review"), list()))
281s > note_5 <- note_create(commit_1, "Note-5", ref = "review")
281s > note_6 <- note_create(commit_2, "Note-6", ref = "review")
281s > stopifnot(identical(length(notes(repo, ref = "review")), 2L))
281s > note_remove(note_5)
281s > note_remove(note_6)
281s > stopifnot(identical(length(notes(repo, ref = "review")), 0L))
281s > 
281s > ## Create note on blob and tree
281s > tree_1 <- tree(commit_1)
281s > note_7 <- note_create(tree_1, "Note-7")
281s > stopifnot(is(object = lookup(repo, note_7$annotated), class2 = "git_tree"))
281s > stopifnot(identical(length(notes(repo)), 2L))
281s > blob_1 <- lookup(repo, tree_1$id[1])
281s > note_8 <- note_create(blob_1, "Note-8")
281s > stopifnot(is(object = lookup(repo, note_8$annotated), class2 = "git_blob"))
281s > stopifnot(identical(length(notes(repo)), 3L))
281s > 
281s > ## Cleanup
281s > unlink(path, recursive = TRUE)
281s > 
281s BEGIN TEST odb_blobs.R
281s 
281s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
281s Copyright (C) 2024 The R Foundation for Statistical Computing
281s Platform: arm-unknown-linux-gnueabihf (32-bit)
281s 
281s R is free software and comes with ABSOLUTELY NO WARRANTY.
281s You are welcome to redistribute it under certain conditions.
281s Type 'license()' or 'licence()' for distribution details.
281s 
281s R is a collaborative project with many contributors.
281s Type 'contributors()' for more information and
281s 'citation()' on how to cite R or R packages in publications.
281s 
281s Type 'demo()' for some demos, 'help()' for on-line help, or
281s 'help.start()' for an HTML browser interface to help.
281s Type 'q()' to quit R.
281s 
281s > ## git2r, R bindings to the libgit2 library.
281s > ## Copyright (C) 2013-2023 The git2r contributors
281s > ##
281s > ## This program is free software; you can redistribute it and/or modify
281s > ## it under the terms of the GNU General Public License, version 2,
281s > ## as published by the Free Software Foundation.
281s > ##
281s > ## git2r is distributed in the hope that it will be useful,
281s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
281s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
281s > ## GNU General Public License for more details.
281s > ##
281s > ## You should have received a copy of the GNU General Public License along
281s > ## with this program; if not, write to the Free Software Foundation, Inc.,
281s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
281s > 
281s > library("git2r")
282s > 
282s > ## For debugging
282s > sessionInfo()
282s R version 4.3.3 (2024-02-29)
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s Running under: Ubuntu Noble Numbat (development branch)
282s 
282s Matrix products: default
282s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
282s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
282s 
282s locale:
282s [1] C
282s 
282s time zone: Etc/UTC
282s tzcode source: system (glibc)
282s 
282s attached base packages:
282s [1] stats     graphics  grDevices utils     datasets  methods   base     
282s 
282s other attached packages:
282s [1] git2r_0.33.0
282s 
282s loaded via a namespace (and not attached):
282s [1] compiler_4.3.3
282s > libgit2_version()
282s $major
282s [1] 1
282s 
282s $minor
282s [1] 7
282s 
282s $rev
282s [1] 2
282s 
282s > libgit2_features()
282s $threads
282s [1] TRUE
282s 
282s $https
282s [1] TRUE
282s 
282s $ssh
282s [1] TRUE
282s 
282s > 
282s > 
282s > ## Create a directory in tempdir
282s > path <- tempfile(pattern = "git2r-")
282s > dir.create(path)
282s > 
282s > ## Initialize a repository
282s > repo <- init(path)
282s > config(repo, user.name = "Alice", user.email = "alice@@example.org")
282s > 
282s > ## Create a file, add and commit
282s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +            con = file.path(path, "test.txt"))
282s > add(repo, "test.txt")
282s > commit(repo, "Commit message 1")
282s [221f682] 2024-03-23: Commit message 1
282s > 
282s > ## Change file and commit
282s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
282s +              con = file.path(path, "test.txt"))
282s > add(repo, "test.txt")
282s > commit(repo, "Commit message 2")
282s [241b271] 2024-03-23: Commit message 2
282s > 
282s > ## Commit same content under different name in a sub-directory
282s > dir.create(file.path(path, "sub-directory"))
282s > file.copy(file.path(path, "test.txt"),
282s +           file.path(path, "sub-directory", "copy.txt"))
282s [1] TRUE
282s > add(repo, "sub-directory/copy.txt")
282s > commit(repo, "Commit message 3")
282s [f8b2aac] 2024-03-23: Commit message 3
282s > 
282s > ## List blobs
282s > b <- odb_blobs(repo)
282s > 
282s > ## Order the data.frame before checking
282s > b <- b[order(b$name), ]
282s > 
282s > ## Check blobs
282s > stopifnot(identical(nrow(b), 3L))
282s > stopifnot(identical(
282s +     colnames(b),
282s +     c("sha", "path", "name", "len", "commit", "author", "when")))
282s > stopifnot(identical(b$path, c("sub-directory", "", "")))
282s > stopifnot(identical(b$name, c("copy.txt", "test.txt", "test.txt")))
282s > stopifnot(identical(b$author, c("Alice", "Alice", "Alice")))
282s > 
282s > ## Cleanup
282s > unlink(path, recursive = TRUE)
282s > 
282s BEGIN TEST pre-process-path.R
282s 
282s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
282s Copyright (C) 2024 The R Foundation for Statistical Computing
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s 
282s R is free software and comes with ABSOLUTELY NO WARRANTY.
282s You are welcome to redistribute it under certain conditions.
282s Type 'license()' or 'licence()' for distribution details.
282s 
282s R is a collaborative project with many contributors.
282s Type 'contributors()' for more information and
282s 'citation()' on how to cite R or R packages in publications.
282s 
282s Type 'demo()' for some demos, 'help()' for on-line help, or
282s 'help.start()' for an HTML browser interface to help.
282s Type 'q()' to quit R.
282s 
282s > ## git2r, R bindings to the libgit2 library.
282s > ## Copyright (C) 2013-2023 The git2r contributors
282s > ##
282s > ## This program is free software; you can redistribute it and/or modify
282s > ## it under the terms of the GNU General Public License, version 2,
282s > ## as published by the Free Software Foundation.
282s > ##
282s > ## git2r is distributed in the hope that it will be useful,
282s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
282s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
282s > ## GNU General Public License for more details.
282s > ##
282s > ## You should have received a copy of the GNU General Public License along
282s > ## with this program; if not, write to the Free Software Foundation, Inc.,
282s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
282s > 
282s > library(git2r)
282s > source("util/check.R")
282s > 
282s > ## For debugging
282s > sessionInfo()
282s R version 4.3.3 (2024-02-29)
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s Running under: Ubuntu Noble Numbat (development branch)
282s 
282s Matrix products: default
282s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
282s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
282s 
282s locale:
282s [1] C
282s 
282s time zone: Etc/UTC
282s tzcode source: system (glibc)
282s 
282s attached base packages:
282s [1] stats     graphics  grDevices utils     datasets  methods   base     
282s 
282s other attached packages:
282s [1] git2r_0.33.0
282s 
282s loaded via a namespace (and not attached):
282s [1] compiler_4.3.3
282s > libgit2_version()
282s $major
282s [1] 1
282s 
282s $minor
282s [1] 7
282s 
282s $rev
282s [1] 2
282s 
282s > libgit2_features()
282s $threads
282s [1] TRUE
282s 
282s $https
282s [1] TRUE
282s 
282s $ssh
282s [1] TRUE
282s 
282s > 
282s > 
282s > ## Create a directory in tempdir
282s > path <- tempfile(pattern = "git2r-")
282s > dir.create(path)
282s > setwd(path)
282s > 
282s > ## Initialize a repository
282s > repo <- init(path)
282s > config(repo, user.name = "Alice", user.email = "alice@example.org")
282s > 
282s > ## Test to add file with a leading './'
282s > writeLines("foo-1", file.path(path, "foo-1"))
282s > add(repo, "./foo-1")
282s > status_exp <- structure(list(staged = list(new = "foo-1"),
282s +                              unstaged = empty_named_list(),
282s +                              untracked = empty_named_list()),
282s +                         class = "git_status")
282s > status_obs <- status(repo)
282s > str(status_exp)
282s List of 3
282s  $ staged   :List of 1
282s   ..$ new: chr "foo-1"
282s  $ unstaged : Named list()
282s  $ untracked: Named list()
282s  - attr(*, "class")= chr "git_status"
282s > str(status_obs)
282s List of 3
282s  $ staged   :List of 1
282s   ..$ new: chr "foo-1"
282s  $ unstaged : Named list()
282s  $ untracked: Named list()
282s  - attr(*, "class")= chr "git_status"
282s > stopifnot(identical(status_obs, status_exp))
282s > 
282s > ## Test to add file in sub-folder with sub-folder as working directory
282s > writeLines("foo-2", file.path(path, "foo-2"))
282s > dir.create(file.path(path, "foo_dir"))
282s > writeLines("foo-2", file.path(path, "foo_dir/foo-2"))
282s > setwd("./foo_dir")
282s > add(repo, "foo-2")
282s > status_exp <- structure(list(staged = list(new = "foo-1",
282s +                                            new = "foo_dir/foo-2"),
282s +                              unstaged = empty_named_list(),
282s +                              untracked = list(untracked = "foo-2")),
282s +                         class = "git_status")
282s > status_obs <- status(repo)
282s > str(status_exp)
282s List of 3
282s  $ staged   :List of 2
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s  $ unstaged : Named list()
282s  $ untracked:List of 1
282s   ..$ untracked: chr "foo-2"
282s  - attr(*, "class")= chr "git_status"
282s > str(status_obs)
282s List of 3
282s  $ staged   :List of 2
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s  $ unstaged : Named list()
282s  $ untracked:List of 1
282s   ..$ untracked: chr "foo-2"
282s  - attr(*, "class")= chr "git_status"
282s > stopifnot(identical(status_obs, status_exp))
282s > 
282s > ## Test glob expansion
282s > setwd(tempdir())
282s > dir.create(file.path(path, "glob_dir"))
282s > writeLines("a", file.path(path, "glob_dir/a.txt"))
282s > writeLines("b", file.path(path, "glob_dir/b.txt"))
282s > writeLines("c", file.path(path, "glob_dir/c.txt"))
282s > writeLines("d", file.path(path, "glob_dir/d.md"))
282s > add(repo, "glob_dir/*txt")
282s > status_exp <- structure(list(staged = list(new = "foo-1",
282s +                                            new = "foo_dir/foo-2",
282s +                                            new = "glob_dir/a.txt",
282s +                                            new = "glob_dir/b.txt",
282s +                                            new = "glob_dir/c.txt"),
282s +                              unstaged = empty_named_list(),
282s +                              untracked = list(untracked = "foo-2",
282s +                                               untracked = "glob_dir/d.md")),
282s +                         class = "git_status")
282s > status_obs <- status(repo)
282s > str(status_exp)
282s List of 3
282s  $ staged   :List of 5
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s   ..$ new: chr "glob_dir/a.txt"
282s   ..$ new: chr "glob_dir/b.txt"
282s   ..$ new: chr "glob_dir/c.txt"
282s  $ unstaged : Named list()
282s  $ untracked:List of 2
282s   ..$ untracked: chr "foo-2"
282s   ..$ untracked: chr "glob_dir/d.md"
282s  - attr(*, "class")= chr "git_status"
282s > str(status_obs)
282s List of 3
282s  $ staged   :List of 5
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s   ..$ new: chr "glob_dir/a.txt"
282s   ..$ new: chr "glob_dir/b.txt"
282s   ..$ new: chr "glob_dir/c.txt"
282s  $ unstaged : Named list()
282s  $ untracked:List of 2
282s   ..$ untracked: chr "foo-2"
282s   ..$ untracked: chr "glob_dir/d.md"
282s  - attr(*, "class")= chr "git_status"
282s > stopifnot(identical(status_obs, status_exp))
282s > 
282s > ## Test glob expansion with relative path
282s > setwd(path)
282s > add(repo, "./glob_dir/*md")
282s > status_exp <- structure(list(staged = list(new = "foo-1",
282s +                                            new = "foo_dir/foo-2",
282s +                                            new = "glob_dir/a.txt",
282s +                                            new = "glob_dir/b.txt",
282s +                                            new = "glob_dir/c.txt",
282s +                                            new = "glob_dir/d.md"),
282s +                              unstaged = empty_named_list(),
282s +                              untracked = list(untracked = "foo-2")),
282s +                         class = "git_status")
282s > status_obs <- status(repo)
282s > str(status_exp)
282s List of 3
282s  $ staged   :List of 6
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s   ..$ new: chr "glob_dir/a.txt"
282s   ..$ new: chr "glob_dir/b.txt"
282s   ..$ new: chr "glob_dir/c.txt"
282s   ..$ new: chr "glob_dir/d.md"
282s  $ unstaged : Named list()
282s  $ untracked:List of 1
282s   ..$ untracked: chr "foo-2"
282s  - attr(*, "class")= chr "git_status"
282s > str(status_obs)
282s List of 3
282s  $ staged   :List of 6
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s   ..$ new: chr "glob_dir/a.txt"
282s   ..$ new: chr "glob_dir/b.txt"
282s   ..$ new: chr "glob_dir/c.txt"
282s   ..$ new: chr "glob_dir/d.md"
282s  $ unstaged : Named list()
282s  $ untracked:List of 1
282s   ..$ untracked: chr "foo-2"
282s  - attr(*, "class")= chr "git_status"
282s > stopifnot(identical(status_obs, status_exp))
282s > 
282s > ## Test to add file in root of workdir when the file also exists in
282s > ## current workdir.
282s > setwd(tempdir())
282s > writeLines("e", file.path(path, "e.txt"))
282s > writeLines("e", file.path(tempdir(), "e.txt"))
282s > add(repo, "e.txt")
282s > status_exp <- structure(list(staged = list(new = "e.txt",
282s +                                            new = "foo-1",
282s +                                            new = "foo_dir/foo-2",
282s +                                            new = "glob_dir/a.txt",
282s +                                            new = "glob_dir/b.txt",
282s +                                            new = "glob_dir/c.txt",
282s +                                            new = "glob_dir/d.md"),
282s +                              unstaged = empty_named_list(),
282s +                              untracked = list(untracked = "foo-2")),
282s +                         class = "git_status")
282s > status_obs <- status(repo)
282s > str(status_exp)
282s List of 3
282s  $ staged   :List of 7
282s   ..$ new: chr "e.txt"
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s   ..$ new: chr "glob_dir/a.txt"
282s   ..$ new: chr "glob_dir/b.txt"
282s   ..$ new: chr "glob_dir/c.txt"
282s   ..$ new: chr "glob_dir/d.md"
282s  $ unstaged : Named list()
282s  $ untracked:List of 1
282s   ..$ untracked: chr "foo-2"
282s  - attr(*, "class")= chr "git_status"
282s > str(status_obs)
282s List of 3
282s  $ staged   :List of 7
282s   ..$ new: chr "e.txt"
282s   ..$ new: chr "foo-1"
282s   ..$ new: chr "foo_dir/foo-2"
282s   ..$ new: chr "glob_dir/a.txt"
282s   ..$ new: chr "glob_dir/b.txt"
282s   ..$ new: chr "glob_dir/c.txt"
282s   ..$ new: chr "glob_dir/d.md"
282s  $ unstaged : Named list()
282s  $ untracked:List of 1
282s   ..$ untracked: chr "foo-2"
282s  - attr(*, "class")= chr "git_status"
282s > stopifnot(identical(status_obs, status_exp))
282s > 
282s > ## Cleanup
282s > unlink(path, recursive = TRUE)
282s > 
282s BEGIN TEST pull.R
282s 
282s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
282s Copyright (C) 2024 The R Foundation for Statistical Computing
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s 
282s R is free software and comes with ABSOLUTELY NO WARRANTY.
282s You are welcome to redistribute it under certain conditions.
282s Type 'license()' or 'licence()' for distribution details.
282s 
282s R is a collaborative project with many contributors.
282s Type 'contributors()' for more information and
282s 'citation()' on how to cite R or R packages in publications.
282s 
282s Type 'demo()' for some demos, 'help()' for on-line help, or
282s 'help.start()' for an HTML browser interface to help.
282s Type 'q()' to quit R.
282s 
282s > ## git2r, R bindings to the libgit2 library.
282s > ## Copyright (C) 2013-2023 The git2r contributors
282s > ##
282s > ## This program is free software; you can redistribute it and/or modify
282s > ## it under the terms of the GNU General Public License, version 2,
282s > ## as published by the Free Software Foundation.
282s > ##
282s > ## git2r is distributed in the hope that it will be useful,
282s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
282s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
282s > ## GNU General Public License for more details.
282s > ##
282s > ## You should have received a copy of the GNU General Public License along
282s > ## with this program; if not, write to the Free Software Foundation, Inc.,
282s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
282s > 
282s > library(git2r)
282s > 
282s > ## For debugging
282s > sessionInfo()
282s R version 4.3.3 (2024-02-29)
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s Running under: Ubuntu Noble Numbat (development branch)
282s 
282s Matrix products: default
282s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
282s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
282s 
282s locale:
282s [1] C
282s 
282s time zone: Etc/UTC
282s tzcode source: system (glibc)
282s 
282s attached base packages:
282s [1] stats     graphics  grDevices utils     datasets  methods   base     
282s 
282s other attached packages:
282s [1] git2r_0.33.0
282s 
282s loaded via a namespace (and not attached):
282s [1] compiler_4.3.3
282s > libgit2_version()
282s $major
282s [1] 1
282s 
282s $minor
282s [1] 7
282s 
282s $rev
282s [1] 2
282s 
282s > libgit2_features()
282s $threads
282s [1] TRUE
282s 
282s $https
282s [1] TRUE
282s 
282s $ssh
282s [1] TRUE
282s 
282s > 
282s > 
282s > ## Create directories for repositories in tempdir
282s > path_bare <- tempfile(pattern = "git2r-")
282s > path_repo_1 <- tempfile(pattern = "git2r-")
282s > path_repo_2 <- tempfile(pattern = "git2r-")
282s > 
282s > dir.create(path_bare)
282s > dir.create(path_repo_1)
282s > dir.create(path_repo_2)
282s > 
282s > ## Create bare repository
282s > bare_repo <- init(path_bare, bare = TRUE)
282s > 
282s > ## Clone to repo 1
282s > repo_1 <- clone(path_bare, path_repo_1)
282s cloning into '/tmp/RtmpuVU5ky/git2r-9097d38245f'...
282s > config(repo_1, user.name = "Alice", user.email = "alice@example.org")
282s > 
282s > ## Add changes to repo 1 and push to bare
282s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +            con = file.path(path_repo_1, "test-1.txt"))
282s > add(repo_1, "test-1.txt")
282s > commit_1 <- commit(repo_1, "First commit message")
282s > branch_name <- branches(repo_1)[[1]]$name
282s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
282s > 
282s > ## Clone to repo 2
282s > repo_2 <- clone(path_bare, path_repo_2)
282s cloning into '/tmp/RtmpuVU5ky/git2r-909345d7188'...
282s > config(repo_2, user.name = "Bob", user.email = "bob@example.org")
282s > 
282s > ## Add more changes to repo 1 and push to bare
282s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
282s +            con = file.path(path_repo_1, "test-1.txt"))
282s > add(repo_1, "test-1.txt")
282s > commit_2 <- commit(repo_1, "Second commit message")
282s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
282s > 
282s > ## Pull changes to repo_2
282s > pull(repo_2)
282s [updated] 6e23341d37..8bc3f8a6e8 refs/remotes/origin/master
282s Merge: Fast-forward
282s > stopifnot(identical(length(commits(repo_2)), 2L))
282s > 
282s > ## Check remote url of repo_2
282s > stopifnot(identical(
282s +     branch_remote_url(branch_get_upstream(repository_head(repo_2))),
282s +     path_bare))
282s > 
282s > ## Unset remote remote tracking branch
282s > branch_set_upstream(repository_head(repo_2), NULL)
282s > stopifnot(is.null(branch_get_upstream(repository_head(repo_2))))
282s > tools::assertError(pull(repo_2))
282s > tools::assertError(branch_set_upstream(repository_head(repo_2), NULL))
282s > 
282s > ## Add more changes to repo 1 and push to bare
282s > writeLines(
282s +     c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +       "eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad",
282s +       "minim veniam, quis nostrud exercitation ullamco laboris nisi ut"),
282s +     con = file.path(path_repo_1, "test-1.txt"))
282s > add(repo_1, "test-1.txt")
282s > commit_3 <- commit(repo_1, "Third commit message")
282s > push(repo_1)
282s > 
282s > ## Set remote tracking branch
282s > branch_set_upstream(repository_head(repo_2),
282s +                     paste0("origin/", branch_name))
282s > stopifnot(identical(
282s +     branch_remote_url(branch_get_upstream(repository_head(repo_2))),
282s +     path_bare))
282s > 
282s > ## Pull changes to repo_2
282s > pull(repo_2)
282s [updated] 8bc3f8a6e8..7dca53f7b3 refs/remotes/origin/master
282s Merge: Fast-forward
282s > stopifnot(identical(length(commits(repo_2)), 3L))
282s > 
282s > ## Check references in repo_1 and repo_2. Must clear the repo item
282s > ## since the repositories have different paths.
282s > stopifnot(identical(length(references(repo_1)), 2L))
282s > 
282s > ref_1 <- references(repo_1)
282s > lapply(seq_len(length(ref_1)), function(i) {
282s +     ref_1[[i]]$repo <<- NULL
282s + })
282s [[1]]
282s NULL
282s 
282s [[2]]
282s NULL
282s 
282s > 
282s > ref_2 <- references(repo_2)
282s > lapply(seq_len(length(ref_2)), function(i) {
282s +     ref_2[[i]]$repo <<- NULL
282s + })
282s [[1]]
282s NULL
282s 
282s [[2]]
282s NULL
282s 
282s [[3]]
282s NULL
282s 
282s > 
282s > name <- paste0("refs/heads/", branch_name)
282s > stopifnot(identical(ref_1[[name]], ref_2[[name]]))
282s > 
282s > name <- paste0("refs/remotes/", branch_name)
282s > stopifnot(identical(ref_1[[name]], ref_2[[name]]))
282s > 
282s > ref_1 <- references(repo_1)[[paste0("refs/heads/", branch_name)]]
282s > stopifnot(identical(ref_1$name, paste0("refs/heads/", branch_name)))
282s > stopifnot(identical(ref_1$type, 1L))
282s > stopifnot(identical(sha(ref_1), sha(commit_3)))
282s > stopifnot(identical(ref_1$target, NA_character_))
282s > stopifnot(identical(ref_1$shorthand, branch_name))
282s > 
282s > ref_2 <- references(repo_1)[[paste0("refs/remotes/origin/", branch_name)]]
282s > stopifnot(identical(ref_2$name, paste0("refs/remotes/origin/", branch_name)))
282s > stopifnot(identical(ref_2$type, 1L))
282s > stopifnot(identical(sha(ref_2), sha(commit_3)))
282s > stopifnot(identical(ref_2$target, NA_character_))
282s > stopifnot(identical(ref_2$shorthand, paste0("origin/", branch_name)))
282s > 
282s > ## Check references with missing repo argument
282s > wd <- setwd(path_repo_1)
282s > stopifnot(identical(length(references()), 2L))
282s > if (!is.null(wd))
282s +     setwd(wd)
282s > 
282s > ## Cleanup
282s > unlink(path_bare, recursive = TRUE)
282s > unlink(path_repo_1, recursive = TRUE)
282s > unlink(path_repo_2, recursive = TRUE)
282s > 
282s BEGIN TEST push-force.R
282s 
282s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
282s Copyright (C) 2024 The R Foundation for Statistical Computing
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s 
282s R is free software and comes with ABSOLUTELY NO WARRANTY.
282s You are welcome to redistribute it under certain conditions.
282s Type 'license()' or 'licence()' for distribution details.
282s 
282s R is a collaborative project with many contributors.
282s Type 'contributors()' for more information and
282s 'citation()' on how to cite R or R packages in publications.
282s 
282s Type 'demo()' for some demos, 'help()' for on-line help, or
282s 'help.start()' for an HTML browser interface to help.
282s Type 'q()' to quit R.
282s 
282s > ## git2r, R bindings to the libgit2 library.
282s > ## Copyright (C) 2013-2023 The git2r contributors
282s > ##
282s > ## This program is free software; you can redistribute it and/or modify
282s > ## it under the terms of the GNU General Public License, version 2,
282s > ## as published by the Free Software Foundation.
282s > ##
282s > ## git2r is distributed in the hope that it will be useful,
282s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
282s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
282s > ## GNU General Public License for more details.
282s > ##
282s > ## You should have received a copy of the GNU General Public License along
282s > ## with this program; if not, write to the Free Software Foundation, Inc.,
282s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
282s > 
282s > library(git2r)
282s > 
282s > ## For debugging
282s > sessionInfo()
282s R version 4.3.3 (2024-02-29)
282s Platform: arm-unknown-linux-gnueabihf (32-bit)
282s Running under: Ubuntu Noble Numbat (development branch)
282s 
282s Matrix products: default
282s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
282s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
282s 
282s locale:
282s [1] C
282s 
282s time zone: Etc/UTC
282s tzcode source: system (glibc)
282s 
282s attached base packages:
282s [1] stats     graphics  grDevices utils     datasets  methods   base     
282s 
282s other attached packages:
282s [1] git2r_0.33.0
282s 
282s loaded via a namespace (and not attached):
282s [1] compiler_4.3.3
282s > libgit2_version()
282s $major
282s [1] 1
282s 
282s $minor
282s [1] 7
282s 
282s $rev
282s [1] 2
282s 
282s > libgit2_features()
282s $threads
282s [1] TRUE
282s 
282s $https
282s [1] TRUE
282s 
282s $ssh
282s [1] TRUE
282s 
282s > 
282s > 
282s > ## Create directories for repositories in tempdir
282s > path_bare <- tempfile(pattern = "git2r-")
282s > path_repo_1 <- tempfile(pattern = "git2r-")
282s > path_repo_2 <- tempfile(pattern = "git2r-")
282s > 
282s > dir.create(path_bare)
282s > dir.create(path_repo_1)
282s > dir.create(path_repo_2)
282s > 
282s > ## Create bare repository
282s > bare_repo <- init(path_bare, bare = TRUE)
282s > 
282s > ## Clone to repo 1
282s > repo_1 <- clone(path_bare, path_repo_1)
282s cloning into '/tmp/RtmpESoQfr/git2r-9182e18070b'...
282s > config(repo_1, user.name = "Alice", user.email = "alice@example.org")
282s > 
282s > ## Add changes to repo 1 and push to bare
282s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +            con = file.path(path_repo_1, "test-1.txt"))
282s > add(repo_1, "test-1.txt")
282s > commit_1 <- commit(repo_1, "First commit message")
282s > branch_name <- branches(repo_1)[[1]]$name
282s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
282s > 
282s > ## Clone to repo 2
282s > repo_2 <- clone(path_bare, path_repo_2)
282s cloning into '/tmp/RtmpESoQfr/git2r-918520a26f'...
282s > config(repo_2, user.name = "Bob", user.email = "bob@example.org")
282s > 
282s > ## Add more changes to repo 1 and push to bare
282s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
282s +            con = file.path(path_repo_1, "test-1.txt"))
282s > add(repo_1, "test-1.txt")
282s > commit_2 <- commit(repo_1, "Second commit message")
282s > push(repo_1, "origin", paste0("refs/heads/", branch_name))
282s > 
282s > ## Add changes to repo 2 and push to bare
282s > writeLines(
282s +     c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
282s +       "eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad",
282s +       "minim veniam, quis nostrud exercitation ullamco laboris nisi ut"),
282s +     con = file.path(path_repo_2, "test-1.txt"))
282s > add(repo_2, "test-1.txt")
282s > commit_3 <- commit(repo_2, "Third commit message")
282s > 
282s > ## We are behind, so this should fail
282s > tools::assertError(push(repo_2))
282s > 
282s > ## Push with force = TRUE
282s > push(repo_2, force = TRUE)
282s > 
282s > ## Check commits
282s > stopifnot(identical(length(commits(bare_repo)), 2L))
282s > stopifnot(identical(sha(commits(repo_2)[[1]]), sha(commits(bare_repo)[[1]])))
282s > stopifnot(identical(sha(commits(repo_2)[[2]]), sha(commits(bare_repo)[[2]])))
282s > 
282s > ## Cleanup
282s > unlink(path_bare, recursive = TRUE)
282s > unlink(path_repo_1, recursive = TRUE)
283s > unlink(path_repo_2, recursive = TRUE)
283s > 
283s BEGIN TEST push.R
283s 
283s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
283s Copyright (C) 2024 The R Foundation for Statistical Computing
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s 
283s R is free software and comes with ABSOLUTELY NO WARRANTY.
283s You are welcome to redistribute it under certain conditions.
283s Type 'license()' or 'licence()' for distribution details.
283s 
283s R is a collaborative project with many contributors.
283s Type 'contributors()' for more information and
283s 'citation()' on how to cite R or R packages in publications.
283s 
283s Type 'demo()' for some demos, 'help()' for on-line help, or
283s 'help.start()' for an HTML browser interface to help.
283s Type 'q()' to quit R.
283s 
283s > ## git2r, R bindings to the libgit2 library.
283s > ## Copyright (C) 2013-2023 The git2r contributors
283s > ##
283s > ## This program is free software; you can redistribute it and/or modify
283s > ## it under the terms of the GNU General Public License, version 2,
283s > ## as published by the Free Software Foundation.
283s > ##
283s > ## git2r is distributed in the hope that it will be useful,
283s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
283s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
283s > ## GNU General Public License for more details.
283s > ##
283s > ## You should have received a copy of the GNU General Public License along
283s > ## with this program; if not, write to the Free Software Foundation, Inc.,
283s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
283s > 
283s > library(git2r)
283s > 
283s > ## For debugging
283s > sessionInfo()
283s R version 4.3.3 (2024-02-29)
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s Running under: Ubuntu Noble Numbat (development branch)
283s 
283s Matrix products: default
283s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
283s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
283s 
283s locale:
283s [1] C
283s 
283s time zone: Etc/UTC
283s tzcode source: system (glibc)
283s 
283s attached base packages:
283s [1] stats     graphics  grDevices utils     datasets  methods   base     
283s 
283s other attached packages:
283s [1] git2r_0.33.0
283s 
283s loaded via a namespace (and not attached):
283s [1] compiler_4.3.3
283s > libgit2_version()
283s $major
283s [1] 1
283s 
283s $minor
283s [1] 7
283s 
283s $rev
283s [1] 2
283s 
283s > libgit2_features()
283s $threads
283s [1] TRUE
283s 
283s $https
283s [1] TRUE
283s 
283s $ssh
283s [1] TRUE
283s 
283s > 
283s > 
283s > ## Create 2 directories in tempdir
283s > path_bare <- tempfile(pattern = "git2r-")
283s > path_repo <- tempfile(pattern = "git2r-")
283s > 
283s > dir.create(path_bare)
283s > dir.create(path_repo)
283s > 
283s > ## Create repositories
283s > bare_repo <- init(path_bare, bare = TRUE)
283s > repo <- clone(path_bare, path_repo)
283s cloning into '/tmp/RtmpJ9qfRf/git2r-9242bc348f2'...
283s > 
283s > ## Check the repositores
283s > stopifnot(identical(is_bare(bare_repo), TRUE))
283s > stopifnot(identical(is_bare(repo), FALSE))
283s > 
283s > ## Config repositories
283s > config(repo, user.name = "Alice", user.email = "alice@example.org")
283s > 
283s > ## Add changes to repo
283s > writeLines("Hello world", con = file.path(path_repo, "test.txt"))
283s > add(repo, "test.txt")
283s > commit_1 <- commit(repo, "Commit message")
283s > branch_name <- branches(repo)[[1]]$name
283s > 
283s > ## Check commit
283s > stopifnot(identical(commit_1$author$name, "Alice"))
283s > stopifnot(identical(commit_1$author$email, "alice@example.org"))
283s > stopifnot(identical(length(commits(repo)), 1L))
283s > stopifnot(identical(commits(repo)[[1]]$author$name, "Alice"))
283s > stopifnot(identical(commits(repo)[[1]]$author$email, "alice@example.org"))
283s > 
283s > ## Check push arguments
283s > tools::assertError(push(repo, character(0), paste0("refs/heads/", branch_name)))
283s > tools::assertError(push(repo, NA_character_, paste0("refs/heads/", branch_name)))
283s > tools::assertError(push(repo, c("origin", "origin"), paste0("refs/heads/", branch_name)))
283s > tools::assertError(push(repo, "origin"))
283s > tools::assertError(push(repo, name = "origin"))
283s > push(repo, "origin", character(0))
283s > push(repo, "origin", NA_character_)
283s > push(repo, "origin", c(NA_character_, NA_character_))
283s > stopifnot(identical(reflog(repo, paste0("refs/remotes/origin/", branch_name)),
283s +                     structure(list(), class = "git_reflog")))
283s > 
283s > ## No tracking branch assigned to master
283s > tools::assertError(push(branches(repo)[[1]]))
283s > 
283s > ## Push changes from repo to origin
283s > push(repo, "origin", paste0("refs/heads/", branch_name))
283s > r <- reflog(repo, paste0("refs/remotes/origin/", branch_name))
283s > stopifnot(identical(length(r), 1L))
283s > r <- r[[1]]
283s > stopifnot(identical(sha(r), sha(commit_1)))
283s > stopifnot(identical(r$message, "update by push"))
283s > stopifnot(identical(r$index, 0L))
283s > stopifnot(identical(r$committer$name, "Alice"))
283s > stopifnot(identical(r$committer$email, "alice@example.org"))
283s > stopifnot(identical(r$refname, paste0("refs/remotes/origin/", branch_name)))
283s > stopifnot(identical(r$repo$path, repo$path))
283s > push(branches(repo)[[1]])
283s > 
283s > ## Check result in bare repository
283s > stopifnot(identical(length(commits(bare_repo)), 1L))
283s > bare_commit_1 <- commits(bare_repo)[[1]]
283s > stopifnot(identical(sha(commit_1), sha(bare_commit_1)))
283s > stopifnot(identical(commit_1$author, bare_commit_1$author))
283s > stopifnot(identical(commit_1$committer, bare_commit_1$committer))
283s > stopifnot(identical(commit_1$summary, bare_commit_1$summary))
283s > stopifnot(identical(commit_1$message, bare_commit_1$message))
283s > stopifnot(!identical(commit_1$repo, bare_commit_1$repo))
283s > 
283s > ## Add changes to repo and push head
283s > writeLines(c("Hello world", "HELLO WORLD"),
283s +            con = file.path(path_repo, "test.txt"))
283s > add(repo, "test.txt")
283s > commit_2 <- commit(repo, "Commit message 2")
283s > push(repo)
283s > bare_commit_2 <- lookup(bare_repo, sha(commit_2))
283s > stopifnot(identical(sha(commit_2), sha(bare_commit_2)))
283s > stopifnot(identical(commit_2$author, bare_commit_2$author))
283s > stopifnot(identical(commit_2$committer, bare_commit_2$committer))
283s > stopifnot(identical(commit_2$summary, bare_commit_2$summary))
283s > stopifnot(identical(commit_2$message, bare_commit_2$message))
283s > stopifnot(!identical(commit_2$repo, bare_commit_2$repo))
283s > 
283s > ## Check 'set_upstream'
283s > branch_set_upstream(repository_head(repo), NULL)
283s > push(repo, "origin", paste0("refs/heads/", branch_name))
283s > stopifnot(is.null(branch_get_upstream(repository_head(repo))))
283s > push(repo, "origin", paste0("refs/heads/", branch_name), set_upstream = TRUE)
283s > stopifnot(!is.null(branch_get_upstream(repository_head(repo))))
283s > 
283s > ## Cleanup
283s > unlink(path_bare, recursive = TRUE)
283s > unlink(path_repo, recursive = TRUE)
283s > 
283s BEGIN TEST reference.R
283s 
283s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
283s Copyright (C) 2024 The R Foundation for Statistical Computing
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s 
283s R is free software and comes with ABSOLUTELY NO WARRANTY.
283s You are welcome to redistribute it under certain conditions.
283s Type 'license()' or 'licence()' for distribution details.
283s 
283s R is a collaborative project with many contributors.
283s Type 'contributors()' for more information and
283s 'citation()' on how to cite R or R packages in publications.
283s 
283s Type 'demo()' for some demos, 'help()' for on-line help, or
283s 'help.start()' for an HTML browser interface to help.
283s Type 'q()' to quit R.
283s 
283s > ## git2r, R bindings to the libgit2 library.
283s > ## Copyright (C) 2013-2023 The git2r contributors
283s > ##
283s > ## This program is free software; you can redistribute it and/or modify
283s > ## it under the terms of the GNU General Public License, version 2,
283s > ## as published by the Free Software Foundation.
283s > ##
283s > ## git2r is distributed in the hope that it will be useful,
283s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
283s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
283s > ## GNU General Public License for more details.
283s > ##
283s > ## You should have received a copy of the GNU General Public License along
283s > ## with this program; if not, write to the Free Software Foundation, Inc.,
283s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
283s > 
283s > library(git2r)
283s > 
283s > ## For debugging
283s > sessionInfo()
283s R version 4.3.3 (2024-02-29)
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s Running under: Ubuntu Noble Numbat (development branch)
283s 
283s Matrix products: default
283s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
283s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
283s 
283s locale:
283s [1] C
283s 
283s time zone: Etc/UTC
283s tzcode source: system (glibc)
283s 
283s attached base packages:
283s [1] stats     graphics  grDevices utils     datasets  methods   base     
283s 
283s other attached packages:
283s [1] git2r_0.33.0
283s 
283s loaded via a namespace (and not attached):
283s [1] compiler_4.3.3
283s > libgit2_version()
283s $major
283s [1] 1
283s 
283s $minor
283s [1] 7
283s 
283s $rev
283s [1] 2
283s 
283s > libgit2_features()
283s $threads
283s [1] TRUE
283s 
283s $https
283s [1] TRUE
283s 
283s $ssh
283s [1] TRUE
283s 
283s > 
283s > 
283s > ## Create a directory in tempdir
283s > path <- tempfile(pattern = "git2r-")
283s > dir.create(path)
283s > 
283s > ## Initialize a repository
283s > repo <- init(path, branch = "main")
283s > config(repo, user.name = "Alice", user.email = "alice@example.org")
283s > 
283s > ## Create a file
283s > writeLines("Hello world!", file.path(path, "test.txt"))
283s > 
283s > ## add and commit
283s > add(repo, "test.txt")
283s > commit(repo, "Commit message")
283s [5fe3d36] 2024-03-23: Commit message
283s > 
283s > ## Check dwim of reference shorthand
283s > stopifnot(identical(.Call(git2r:::git2r_reference_dwim, repo, "")$name,
283s +                     "refs/heads/main"))
283s > stopifnot(identical(.Call(git2r:::git2r_reference_dwim, repo, "main")$name,
283s +                     "refs/heads/main"))
283s > stopifnot(identical(
283s +     .Call(git2r:::git2r_reference_dwim, repo, "refs/heads/main")$name,
283s +     "refs/heads/main"))
283s > 
283s > ## print reference
283s > r <- .Call(git2r:::git2r_reference_dwim, repo, "refs/heads/main")
283s > stopifnot(identical(print(r), r))
283s [5fe3d3] main
283s > 
283s > ## Cleanup
283s > unlink(path, recursive = TRUE)
283s > 
283s BEGIN TEST reflog.R
283s 
283s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
283s Copyright (C) 2024 The R Foundation for Statistical Computing
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s 
283s R is free software and comes with ABSOLUTELY NO WARRANTY.
283s You are welcome to redistribute it under certain conditions.
283s Type 'license()' or 'licence()' for distribution details.
283s 
283s R is a collaborative project with many contributors.
283s Type 'contributors()' for more information and
283s 'citation()' on how to cite R or R packages in publications.
283s 
283s Type 'demo()' for some demos, 'help()' for on-line help, or
283s 'help.start()' for an HTML browser interface to help.
283s Type 'q()' to quit R.
283s 
283s > ## git2r, R bindings to the libgit2 library.
283s > ## Copyright (C) 2013-2023 The git2r contributors
283s > ##
283s > ## This program is free software; you can redistribute it and/or modify
283s > ## it under the terms of the GNU General Public License, version 2,
283s > ## as published by the Free Software Foundation.
283s > ##
283s > ## git2r is distributed in the hope that it will be useful,
283s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
283s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
283s > ## GNU General Public License for more details.
283s > ##
283s > ## You should have received a copy of the GNU General Public License along
283s > ## with this program; if not, write to the Free Software Foundation, Inc.,
283s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
283s > 
283s > library("git2r")
283s > 
283s > ## For debugging
283s > sessionInfo()
283s R version 4.3.3 (2024-02-29)
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s Running under: Ubuntu Noble Numbat (development branch)
283s 
283s Matrix products: default
283s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
283s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
283s 
283s locale:
283s [1] C
283s 
283s time zone: Etc/UTC
283s tzcode source: system (glibc)
283s 
283s attached base packages:
283s [1] stats     graphics  grDevices utils     datasets  methods   base     
283s 
283s other attached packages:
283s [1] git2r_0.33.0
283s 
283s loaded via a namespace (and not attached):
283s [1] compiler_4.3.3
283s > libgit2_version()
283s $major
283s [1] 1
283s 
283s $minor
283s [1] 7
283s 
283s $rev
283s [1] 2
283s 
283s > libgit2_features()
283s $threads
283s [1] TRUE
283s 
283s $https
283s [1] TRUE
283s 
283s $ssh
283s [1] TRUE
283s 
283s > 
283s > 
283s > ## Create a directory in tempdir
283s > path <- tempfile(pattern = "git2r-")
283s > dir.create(path)
283s > 
283s > ## Initialize a repository
283s > repo <- init(path)
283s > config(repo, user.name = "Alice", user.email = "alice@example.org")
283s > 
283s > ## Check that reflog is empty
283s > stopifnot(identical(reflog(repo), structure(list(), class = "git_reflog")))
283s > 
283s > ## Create a file
283s > writeLines("Hello world!", file.path(path, "test.txt"))
283s > 
283s > ## add and commit
283s > add(repo, "test.txt")
283s > commit_1 <- commit(repo, "Commit message")
283s > 
283s > ## Check that reflog is not empry
283s > stopifnot(identical(length(reflog(repo)), 1L))
283s > reflog_entry <- reflog(repo)[[1]]
283s > stopifnot(identical(sha(reflog_entry), sha(commit_1)))
283s > stopifnot(identical(reflog_entry$refname, "HEAD"))
283s > stopifnot(identical(reflog_entry$index, 0L))
283s > stopifnot(identical(reflog_entry$committer$email, "alice@example.org"))
283s > stopifnot(identical(reflog_entry$message, "commit (initial): Commit message"))
283s > 
283s > ## Check printing
283s > r <- reflog(repo)
283s > stopifnot(identical(print(r), r))
283s [5fe3d36] HEAD@{0}: commit (initial): Commit message
283s > 
283s > ## Cleanup
283s > unlink(path, recursive = TRUE)
283s > 
283s BEGIN TEST refspec.R
283s 
283s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
283s Copyright (C) 2024 The R Foundation for Statistical Computing
283s Platform: arm-unknown-linux-gnueabihf (32-bit)
283s 
283s R is free software and comes with ABSOLUTELY NO WARRANTY.
283s You are welcome to redistribute it under certain conditions.
283s Type 'license()' or 'licence()' for distribution details.
283s 
283s R is a collaborative project with many contributors.
283s Type 'contributors()' for more information and
283s 'citation()' on how to cite R or R packages in publications.
283s 
283s Type 'demo()' for some demos, 'help()' for on-line help, or
283s 'help.start()' for an HTML browser interface to help.
283s Type 'q()' to quit R.
283s 
283s > ## git2r, R bindings to the libgit2 library.
283s > ## Copyright (C) 2013-2023 The git2r contributors
283s > ##
283s > ## This program is free software; you can redistribute it and/or modify
283s > ## it under the terms of the GNU General Public License, version 2,
283s > ## as published by the Free Software Foundation.
283s > ##
283s > ## git2r is distributed in the hope that it will be useful,
283s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
283s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
283s > ## GNU General Public License for more details.
283s > ##
283s > ## You should have received a copy of the GNU General Public License along
283s > ## with this program; if not, write to the Free Software Foundation, Inc.,
283s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
283s > 
283s > library("git2r")
284s > 
284s > ## For debugging
284s > sessionInfo()
284s R version 4.3.3 (2024-02-29)
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s Running under: Ubuntu Noble Numbat (development branch)
284s 
284s Matrix products: default
284s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
284s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
284s 
284s locale:
284s [1] C
284s 
284s time zone: Etc/UTC
284s tzcode source: system (glibc)
284s 
284s attached base packages:
284s [1] stats     graphics  grDevices utils     datasets  methods   base     
284s 
284s other attached packages:
284s [1] git2r_0.33.0
284s 
284s loaded via a namespace (and not attached):
284s [1] compiler_4.3.3
284s > libgit2_version()
284s $major
284s [1] 1
284s 
284s $minor
284s [1] 7
284s 
284s $rev
284s [1] 2
284s 
284s > libgit2_features()
284s $threads
284s [1] TRUE
284s 
284s $https
284s [1] TRUE
284s 
284s $ssh
284s [1] TRUE
284s 
284s > 
284s > 
284s > ## Create directories for repositories in tempdir
284s > path_bare <- tempfile(pattern = "git2r-")
284s > path_repo <- tempfile(pattern = "git2r-")
284s > 
284s > dir.create(path_bare)
284s > dir.create(path_repo)
284s > 
284s > ## Create bare repository
284s > bare_repo <- init(path_bare, bare = TRUE)
284s > 
284s > ## Clone to repo
284s > repo <- clone(path_bare, path_repo)
284s cloning into '/tmp/RtmpVAwzyK/git2r-94b3b31f985'...
284s > config(repo, user.name = "Alice", user.email = "alice@example.org")
284s > 
284s > ## Add changes to repo
284s > writeLines("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
284s +            con = file.path(path_repo, "test.txt"))
284s > add(repo, "test.txt")
284s > commit_1 <- commit(repo, "First commit message")
284s > 
284s > ## Add more changes to repo
284s > writeLines(c("Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do",
284s +              "eiusmod tempor incididunt ut labore et dolore magna aliqua."),
284s +            con = file.path(path_repo, "test.txt"))
284s > add(repo, "test.txt")
284s > commit_2 <- commit(repo, "Second commit message")
284s > 
284s > ## Check remote
284s > stopifnot(identical(
284s +     git2r:::get_refspec(repo, spec = "master")$remote,
284s +     "origin"))
284s > 
284s > ## Detach
284s > checkout(commit_1)
284s > tools::assertError(git2r:::get_refspec(repo))
284s > 
284s > ## Cleanup
284s > unlink(path_bare, recursive = TRUE)
284s > unlink(path_repo, recursive = TRUE)
284s > 
284s BEGIN TEST remotes.R
284s 
284s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
284s Copyright (C) 2024 The R Foundation for Statistical Computing
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s 
284s R is free software and comes with ABSOLUTELY NO WARRANTY.
284s You are welcome to redistribute it under certain conditions.
284s Type 'license()' or 'licence()' for distribution details.
284s 
284s R is a collaborative project with many contributors.
284s Type 'contributors()' for more information and
284s 'citation()' on how to cite R or R packages in publications.
284s 
284s Type 'demo()' for some demos, 'help()' for on-line help, or
284s 'help.start()' for an HTML browser interface to help.
284s Type 'q()' to quit R.
284s 
284s > ## git2r, R bindings to the libgit2 library.
284s > ## Copyright (C) 2013-2023 The git2r contributors
284s > ##
284s > ## This program is free software; you can redistribute it and/or modify
284s > ## it under the terms of the GNU General Public License, version 2,
284s > ## as published by the Free Software Foundation.
284s > ##
284s > ## git2r is distributed in the hope that it will be useful,
284s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
284s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
284s > ## GNU General Public License for more details.
284s > ##
284s > ## You should have received a copy of the GNU General Public License along
284s > ## with this program; if not, write to the Free Software Foundation, Inc.,
284s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
284s > 
284s > library("git2r")
284s > 
284s > ## For debugging
284s > sessionInfo()
284s R version 4.3.3 (2024-02-29)
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s Running under: Ubuntu Noble Numbat (development branch)
284s 
284s Matrix products: default
284s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
284s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
284s 
284s locale:
284s [1] C
284s 
284s time zone: Etc/UTC
284s tzcode source: system (glibc)
284s 
284s attached base packages:
284s [1] stats     graphics  grDevices utils     datasets  methods   base     
284s 
284s other attached packages:
284s [1] git2r_0.33.0
284s 
284s loaded via a namespace (and not attached):
284s [1] compiler_4.3.3
284s > libgit2_version()
284s $major
284s [1] 1
284s 
284s $minor
284s [1] 7
284s 
284s $rev
284s [1] 2
284s 
284s > libgit2_features()
284s $threads
284s [1] TRUE
284s 
284s $https
284s [1] TRUE
284s 
284s $ssh
284s [1] TRUE
284s 
284s > 
284s > 
284s > ## Create a directory in tempdir
284s > path <- tempfile(pattern = "git2r-")
284s > dir.create(path)
284s > 
284s > ## Initialize a repository
284s > repo <- init(path)
284s > config(repo, user.name = "Alice", user.email = "alice@example.org")
284s > 
284s > ## Create a file
284s > writeLines("Hello world!", file.path(path, "test.txt"))
284s > 
284s > ## Add and commit
284s > add(repo, "test.txt")
284s > commit_1 <- commit(repo, "Commit message")
284s > 
284s > ## Add a remote
284s > remote_add(repo, "playground",
284s +            "https://github.com/gaborcsardi/playground")
284s > 
284s > stopifnot(identical(remotes(repo), "playground"))
284s > stopifnot(identical(remote_url(repo, "playground"),
284s +                     "https://github.com/gaborcsardi/playground"))
284s > stopifnot(identical(remote_url(repo),
284s +                     "https://github.com/gaborcsardi/playground"))
284s > 
284s > ## Rename a remote
284s > remote_rename(repo, "playground", "foobar")
284s > 
284s > stopifnot(identical(remotes(repo), "foobar"))
284s > stopifnot(identical(remote_url(repo, "foobar"),
284s +                     "https://github.com/gaborcsardi/playground"))
284s > 
284s > ## Set remote url
284s > remote_set_url(repo, "foobar", "https://github.com/stewid/playground")
284s > stopifnot(identical(remote_url(repo, "foobar"),
284s +                     "https://github.com/stewid/playground"))
284s > 
284s > ## Remove a remote
284s > remote_remove(repo, "foobar")
284s > 
284s > stopifnot(identical(remotes(repo), character(0)))
284s > 
284s > if (identical(Sys.getenv("NOT_CRAN"), "true")) {
284s +     if (isTRUE(libgit2_features()$https)) {
284s +         refs <- remote_ls("https://github.com/ropensci/git2r")
284s +         stopifnot(length(refs) > 0)
284s +         stopifnot(names(refs) > 0)
284s +         stopifnot(any(names(refs) == "HEAD"))
284s +     }
284s + }
284s > 
284s > # an invalid URL should throw an error
284s > tools::assertError(remote_ls("bad"))
284s > 
284s > ## Cleanup
284s > unlink(path, recursive = TRUE)
284s > 
284s BEGIN TEST remove.R
284s 
284s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
284s Copyright (C) 2024 The R Foundation for Statistical Computing
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s 
284s R is free software and comes with ABSOLUTELY NO WARRANTY.
284s You are welcome to redistribute it under certain conditions.
284s Type 'license()' or 'licence()' for distribution details.
284s 
284s R is a collaborative project with many contributors.
284s Type 'contributors()' for more information and
284s 'citation()' on how to cite R or R packages in publications.
284s 
284s Type 'demo()' for some demos, 'help()' for on-line help, or
284s 'help.start()' for an HTML browser interface to help.
284s Type 'q()' to quit R.
284s 
284s > ## git2r, R bindings to the libgit2 library.
284s > ## Copyright (C) 2013-2023 The git2r contributors
284s > ##
284s > ## This program is free software; you can redistribute it and/or modify
284s > ## it under the terms of the GNU General Public License, version 2,
284s > ## as published by the Free Software Foundation.
284s > ##
284s > ## git2r is distributed in the hope that it will be useful,
284s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
284s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
284s > ## GNU General Public License for more details.
284s > ##
284s > ## You should have received a copy of the GNU General Public License along
284s > ## with this program; if not, write to the Free Software Foundation, Inc.,
284s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
284s > 
284s > library("git2r")
284s > 
284s > ## For debugging
284s > sessionInfo()
284s R version 4.3.3 (2024-02-29)
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s Running under: Ubuntu Noble Numbat (development branch)
284s 
284s Matrix products: default
284s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
284s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
284s 
284s locale:
284s [1] C
284s 
284s time zone: Etc/UTC
284s tzcode source: system (glibc)
284s 
284s attached base packages:
284s [1] stats     graphics  grDevices utils     datasets  methods   base     
284s 
284s other attached packages:
284s [1] git2r_0.33.0
284s 
284s loaded via a namespace (and not attached):
284s [1] compiler_4.3.3
284s > libgit2_version()
284s $major
284s [1] 1
284s 
284s $minor
284s [1] 7
284s 
284s $rev
284s [1] 2
284s 
284s > libgit2_features()
284s $threads
284s [1] TRUE
284s 
284s $https
284s [1] TRUE
284s 
284s $ssh
284s [1] TRUE
284s 
284s > 
284s > 
284s > ## Create a directory in tempdir
284s > path <- tempfile(pattern = "git2r-")
284s > dir.create(path)
284s > 
284s > ## Initialize a repository
284s > repo <- init(path)
284s > config(repo, user.name = "Alice", user.email = "alice@example.org")
284s > 
284s > ## Add files
284s > invisible(lapply(file.path(path, letters[1:4]), writeLines, text = ""))
284s > add(repo, letters)
284s > commit(repo, "init")
284s [829ab42] 2024-03-23: init
284s > 
284s > ## Remove one file
284s > rm_file(repo, letters[1])
284s > commit(repo, "remove")
284s [fcb9522] 2024-03-23: remove
284s > 
284s > ## Remove two files. Don't raise warnings
284s > withCallingHandlers(rm_file(repo, letters[2:3]), warning = function(w) stop(w))
284s > 
284s > ## Remove one file using the absolute path to the file.
284s > rm_file(repo, file.path(path, letters[4]))
284s > 
284s > ## Cleanup
284s > unlink(path, recursive = TRUE)
284s > 
284s BEGIN TEST repository.R
284s 
284s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
284s Copyright (C) 2024 The R Foundation for Statistical Computing
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s 
284s R is free software and comes with ABSOLUTELY NO WARRANTY.
284s You are welcome to redistribute it under certain conditions.
284s Type 'license()' or 'licence()' for distribution details.
284s 
284s R is a collaborative project with many contributors.
284s Type 'contributors()' for more information and
284s 'citation()' on how to cite R or R packages in publications.
284s 
284s Type 'demo()' for some demos, 'help()' for on-line help, or
284s 'help.start()' for an HTML browser interface to help.
284s Type 'q()' to quit R.
284s 
284s > ## git2r, R bindings to the libgit2 library.
284s > ## Copyright (C) 2013-2023 The git2r contributors
284s > ##
284s > ## This program is free software; you can redistribute it and/or modify
284s > ## it under the terms of the GNU General Public License, version 2,
284s > ## as published by the Free Software Foundation.
284s > ##
284s > ## git2r is distributed in the hope that it will be useful,
284s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
284s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
284s > ## GNU General Public License for more details.
284s > ##
284s > ## You should have received a copy of the GNU General Public License along
284s > ## with this program; if not, write to the Free Software Foundation, Inc.,
284s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
284s > 
284s > library(git2r)
284s > source("util/check.R")
284s > 
284s > ## For debugging
284s > sessionInfo()
284s R version 4.3.3 (2024-02-29)
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s Running under: Ubuntu Noble Numbat (development branch)
284s 
284s Matrix products: default
284s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
284s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
284s 
284s locale:
284s [1] C
284s 
284s time zone: Etc/UTC
284s tzcode source: system (glibc)
284s 
284s attached base packages:
284s [1] stats     graphics  grDevices utils     datasets  methods   base     
284s 
284s other attached packages:
284s [1] git2r_0.33.0
284s 
284s loaded via a namespace (and not attached):
284s [1] compiler_4.3.3
284s > libgit2_version()
284s $major
284s [1] 1
284s 
284s $minor
284s [1] 7
284s 
284s $rev
284s [1] 2
284s 
284s > libgit2_features()
284s $threads
284s [1] TRUE
284s 
284s $https
284s [1] TRUE
284s 
284s $ssh
284s [1] TRUE
284s 
284s > 
284s > 
284s > ## Create a directory in tempdir
284s > path <- tempfile(pattern = "git2r-")
284s > dir.create(path)
284s > 
284s > ## is_bare: "Invalid repository"
284s > tools::assertError(is_bare(new("git_repository")))
284s > 
284s > ## is_empty: "Invalid repository"
284s > tools::assertError(is_empty(new("git_repository")))
284s > 
284s > ## Check that open an invalid repository fails
284s > tools::assertError(repository(path))
284s > tools::assertError(repository(path, discover = FALSE))
284s > 
284s > ## Check that it fails to open/init a repository with a path to a
284s > ## file.
284s > writeLines("test", file.path(path, "test.txt"))
284s > tools::assertError(repository(file.path(path, "test.txt"),
284s +                               discover = FALSE))
284s > tools::assertError(init(file.path(path, "test.txt")))
284s > unlink(file.path(path, "test.txt"))
284s > 
284s > ## Initialize a repository
284s > repo <- init(path)
284s > stopifnot(identical(print(repo), repo))
284s Local:    /tmp/RtmpaJKKtn/git2r-96f2d597cc6
284s Head:     nothing commited (yet)
284s > 
284s > ## Check the state of the repository
284s > stopifnot(identical(is_bare(repo), FALSE))
284s > stopifnot(identical(is_empty(repo), TRUE))
284s > stopifnot(identical(is_shallow(repo), FALSE))
284s > stopifnot(identical(branches(repo), empty_named_list()))
284s > stopifnot(identical(references(repo), empty_named_list()))
284s > stopifnot(identical(commits(repo), list()))
284s > stopifnot(identical(repository_head(repo), NULL))
284s > 
284s > # check that we can find repository from a path
284s > wd <- sub(paste0("[", .Platform$file.sep, "]$"), "",  workdir(repo))
284s > writeLines("test file", con = file.path(wd, "myfile.txt"))
284s > stopifnot(identical(discover_repository(file.path(wd, "myfile.txt")),
284s +                     file.path(wd, ".git")))
284s > stopifnot(identical(discover_repository(file.path(wd, "doesntexist.txt")),
284s +                     NULL))
284s > 
284s > # Check that we can use ceiling in discover repostiory
284s > dir.create(file.path(wd, "temp"))
284s > stopifnot(identical(discover_repository(file.path(wd, "temp"), 0), NULL))
284s > stopifnot(identical(discover_repository(file.path(wd, "temp"), 1),
284s +                     file.path(wd, ".git")))
284s > tools::assertError(discover_repository(file.path(wd, "temp"), 2))
284s > 
284s > ## Check that lookup with a sha of less than 4 characters or more than
284s > ## 40 characters fail.
284s > tools::assertError(lookup(repo, paste0(rep("a", 3), collapse = "")))
284s > tools::assertError(lookup(repo, paste0(rep("a", 41), collapse = "")))
284s > 
284s > ## Check in_repository
284s > stopifnot(identical(in_repository(path), TRUE))
284s > 
284s > ## Check:
284s > ## - in_repository method with missing path argument
284s > ## - repository method with missing path argument
284s > ## - workdir method with missing path argument
284s > ## - is_empty method with missing repo argument
284s > ## - is_shallow method with missing repo argument
284s > wd <- setwd(path)
284s > stopifnot(identical(in_repository(), TRUE))
284s > stopifnot(identical(workdir(repository(path)), workdir(repository())))
284s > stopifnot(identical(workdir(repository(path)), workdir()))
284s > stopifnot(identical(is_empty(), TRUE))
284s > stopifnot(identical(is_shallow(), FALSE))
284s Warning message:
284s In normalizePath(path) :
284s   path[1]="/tmp/RtmpaJKKtn/git2r-96f2d597cc6/doesntexist.txt": No such file or directory
284s > if (!is.null(wd))
284s +     setwd(wd)
284s > 
284s > ## Cleanup
284s > unlink(path, recursive = TRUE)
284s > 
284s BEGIN TEST reset.R
284s 
284s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
284s Copyright (C) 2024 The R Foundation for Statistical Computing
284s Platform: arm-unknown-linux-gnueabihf (32-bit)
284s 
284s R is free software and comes with ABSOLUTELY NO WARRANTY.
284s You are welcome to redistribute it under certain conditions.
284s Type 'license()' or 'licence()' for distribution details.
284s 
284s R is a collaborative project with many contributors.
284s Type 'contributors()' for more information and
284s 'citation()' on how to cite R or R packages in publications.
284s 
284s Type 'demo()' for some demos, 'help()' for on-line help, or
284s 'help.start()' for an HTML browser interface to help.
284s Type 'q()' to quit R.
284s 
285s > ## git2r, R bindings to the libgit2 library.
285s > ## Copyright (C) 2013-2023 The git2r contributors
285s > ##
285s > ## This program is free software; you can redistribute it and/or modify
285s > ## it under the terms of the GNU General Public License, version 2,
285s > ## as published by the Free Software Foundation.
285s > ##
285s > ## git2r is distributed in the hope that it will be useful,
285s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
285s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
285s > ## GNU General Public License for more details.
285s > ##
285s > ## You should have received a copy of the GNU General Public License along
285s > ## with this program; if not, write to the Free Software Foundation, Inc.,
285s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
285s > 
285s > library(git2r)
285s > source("util/check.R")
285s > 
285s > ## For debugging
285s > sessionInfo()
285s R version 4.3.3 (2024-02-29)
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s Running under: Ubuntu Noble Numbat (development branch)
285s 
285s Matrix products: default
285s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
285s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
285s 
285s locale:
285s [1] C
285s 
285s time zone: Etc/UTC
285s tzcode source: system (glibc)
285s 
285s attached base packages:
285s [1] stats     graphics  grDevices utils     datasets  methods   base     
285s 
285s other attached packages:
285s [1] git2r_0.33.0
285s 
285s loaded via a namespace (and not attached):
285s [1] compiler_4.3.3
285s > libgit2_version()
285s $major
285s [1] 1
285s 
285s $minor
285s [1] 7
285s 
285s $rev
285s [1] 2
285s 
285s > libgit2_features()
285s $threads
285s [1] TRUE
285s 
285s $https
285s [1] TRUE
285s 
285s $ssh
285s [1] TRUE
285s 
285s > 
285s > 
285s > ## Create a directory in tempdir
285s > path <- tempfile(pattern = "git2r-")
285s > dir.create(path)
285s > 
285s > ## Initialize a repository
285s > repo <- init(path)
285s > config(repo, user.name = "Alice", user.email = "alice@example.org")
285s > 
285s > ## Create a file
285s > writeLines("Hello world!", file.path(path, "test-1.txt"))
285s > 
285s > ## Add and reset an empty repository using a path
285s > add(repo, "test-1.txt")
285s > stopifnot(identical(
285s +     status(repo),
285s +     structure(list(staged = list(new = "test-1.txt"),
285s +                    unstaged = empty_named_list(),
285s +                    untracked = empty_named_list()),
285s +               class = "git_status")))
285s > reset(repo, path = "test-1.txt")
285s > stopifnot(identical(
285s +     status(repo),
285s +     structure(list(staged = empty_named_list(),
285s +                    unstaged = empty_named_list(),
285s +                    untracked = list(untracked = "test-1.txt")),
285s +               class = "git_status")))
285s > 
285s > ## Add and reset a non-empty repository using a path
285s > add(repo, "test-1.txt")
285s > commit(repo, "First commit")
285s [a582390] 2024-03-23: First commit
285s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test-1.txt"))
285s > add(repo, "test-1.txt")
285s > stopifnot(identical(
285s +     status(repo),
285s +     structure(list(staged = list(modified = "test-1.txt"),
285s +                    unstaged = empty_named_list(),
285s +                    untracked = empty_named_list()),
285s +               class = "git_status")))
285s > reset(repo, path = "test-1.txt")
285s > stopifnot(identical(
285s +     status(repo),
285s +     structure(list(staged = empty_named_list(),
285s +                    unstaged = list(modified = "test-1.txt"),
285s +                    untracked = empty_named_list()),
285s +               class = "git_status")))
285s > 
285s > ## add and commit
285s > add(repo, "test-1.txt")
285s > commit_1 <- commit(repo, "Commit message")
285s > 
285s > ## Make one more commit
285s > writeLines(c("Hello world!", "HELLO WORLD!", "hello world!"),
285s +            file.path(path, "test-1.txt"))
285s > add(repo, "test-1.txt")
285s > commit(repo, "Next commit message")
285s [92f3273] 2024-03-23: Next commit message
285s > 
285s > ## Create one more file
285s > writeLines("Hello world!", file.path(path, "test-2.txt"))
285s > 
285s > ## 'soft' reset to first commit
285s > reset(commit_1)
285s > soft_exp <- structure(list(staged = list(modified = "test-1.txt"),
285s +                            unstaged = empty_named_list(),
285s +                            untracked = list(untracked = "test-2.txt")),
285s +                       class = "git_status")
285s > soft_obs <- status(repo)
285s > stopifnot(identical(soft_obs, soft_exp))
285s > stopifnot(identical(length(commits(repo)), 2L))
285s > stopifnot(identical(commits(repo)[[1]], commit_1))
285s > 
285s > ## 'mixed' reset to first commit
285s > commit(repo, "Next commit message")
285s [92f3273] 2024-03-23: Next commit message
285s > reset(commit_1, "mixed")
285s > mixed_exp <- structure(list(staged = empty_named_list(),
285s +                             unstaged = list(modified = "test-1.txt"),
285s +                             untracked = list(untracked = "test-2.txt")),
285s +                        class = "git_status")
285s > mixed_obs <- status(repo)
285s > stopifnot(identical(mixed_obs, mixed_exp))
285s > stopifnot(identical(length(commits(repo)), 2L))
285s > stopifnot(identical(commits(repo)[[1]], commit_1))
285s > 
285s > ## 'hard' reset to first commit
285s > add(repo, "test-1.txt")
285s > commit(repo, "Next commit message")
285s [92f3273] 2024-03-23: Next commit message
285s > reset(commit_1, "hard")
285s > hard_exp <- structure(list(staged = empty_named_list(),
285s +                            unstaged = empty_named_list(),
285s +                            untracked = list(untracked = "test-2.txt")),
285s +                       class = "git_status")
285s > hard_obs <- status(repo)
285s > stopifnot(identical(hard_obs, hard_exp))
285s > stopifnot(identical(length(commits(repo)), 2L))
285s > stopifnot(identical(commits(repo)[[1]], commit_1))
285s > 
285s > ## Cleanup
285s > unlink(path, recursive = TRUE)
285s > 
285s BEGIN TEST revparse.R
285s 
285s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
285s Copyright (C) 2024 The R Foundation for Statistical Computing
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s 
285s R is free software and comes with ABSOLUTELY NO WARRANTY.
285s You are welcome to redistribute it under certain conditions.
285s Type 'license()' or 'licence()' for distribution details.
285s 
285s R is a collaborative project with many contributors.
285s Type 'contributors()' for more information and
285s 'citation()' on how to cite R or R packages in publications.
285s 
285s Type 'demo()' for some demos, 'help()' for on-line help, or
285s 'help.start()' for an HTML browser interface to help.
285s Type 'q()' to quit R.
285s 
285s > ## git2r, R bindings to the libgit2 library.
285s > ## Copyright (C) 2013-2023 The git2r contributors
285s > ##
285s > ## This program is free software; you can redistribute it and/or modify
285s > ## it under the terms of the GNU General Public License, version 2,
285s > ## as published by the Free Software Foundation.
285s > ##
285s > ## git2r is distributed in the hope that it will be useful,
285s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
285s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
285s > ## GNU General Public License for more details.
285s > ##
285s > ## You should have received a copy of the GNU General Public License along
285s > ## with this program; if not, write to the Free Software Foundation, Inc.,
285s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
285s > 
285s > library("git2r")
285s > 
285s > ## For debugging
285s > sessionInfo()
285s R version 4.3.3 (2024-02-29)
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s Running under: Ubuntu Noble Numbat (development branch)
285s 
285s Matrix products: default
285s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
285s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
285s 
285s locale:
285s [1] C
285s 
285s time zone: Etc/UTC
285s tzcode source: system (glibc)
285s 
285s attached base packages:
285s [1] stats     graphics  grDevices utils     datasets  methods   base     
285s 
285s other attached packages:
285s [1] git2r_0.33.0
285s 
285s loaded via a namespace (and not attached):
285s [1] compiler_4.3.3
285s > libgit2_version()
285s $major
285s [1] 1
285s 
285s $minor
285s [1] 7
285s 
285s $rev
285s [1] 2
285s 
285s > libgit2_features()
285s $threads
285s [1] TRUE
285s 
285s $https
285s [1] TRUE
285s 
285s $ssh
285s [1] TRUE
285s 
285s > 
285s > 
285s > ## Create a directory in tempdir
285s > path <- tempfile(pattern = "git2r-")
285s > dir.create(path)
285s > 
285s > ## Initialize a repository
285s > repo <- init(path)
285s > config(repo, user.name = "Alice", user.email = "alice@example.org")
285s > 
285s > ## Create a file
285s > writeLines("Hello world!", file.path(path, "test.txt"))
285s > 
285s > ## Add and commit
285s > add(repo, "test.txt")
285s > commit_1 <- commit(repo, "First commit message")
285s > 
285s > tools::assertError(revparse_single(repo, "HEAD^"))
285s > 
285s > ## Add another commit
285s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test.txt"))
285s > add(repo, "test.txt")
285s > commit(repo, "Second commit message")
285s [2c295e2] 2024-03-23: Second commit message
285s > 
285s > stopifnot(identical(revparse_single(repo, "HEAD^"), commit_1))
285s > stopifnot(is_blob(revparse_single(repo, "HEAD:test.txt")))
285s > 
285s > ## Cleanup
285s > unlink(path, recursive = TRUE)
285s > 
285s BEGIN TEST signature.R
285s 
285s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
285s Copyright (C) 2024 The R Foundation for Statistical Computing
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s 
285s R is free software and comes with ABSOLUTELY NO WARRANTY.
285s You are welcome to redistribute it under certain conditions.
285s Type 'license()' or 'licence()' for distribution details.
285s 
285s R is a collaborative project with many contributors.
285s Type 'contributors()' for more information and
285s 'citation()' on how to cite R or R packages in publications.
285s 
285s Type 'demo()' for some demos, 'help()' for on-line help, or
285s 'help.start()' for an HTML browser interface to help.
285s Type 'q()' to quit R.
285s 
285s > ## git2r, R bindings to the libgit2 library.
285s > ## Copyright (C) 2013-2023 The git2r contributors
285s > ##
285s > ## This program is free software; you can redistribute it and/or modify
285s > ## it under the terms of the GNU General Public License, version 2,
285s > ## as published by the Free Software Foundation.
285s > ##
285s > ## git2r is distributed in the hope that it will be useful,
285s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
285s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
285s > ## GNU General Public License for more details.
285s > ##
285s > ## You should have received a copy of the GNU General Public License along
285s > ## with this program; if not, write to the Free Software Foundation, Inc.,
285s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
285s > 
285s > library("git2r")
285s > 
285s > ## For debugging
285s > sessionInfo()
285s R version 4.3.3 (2024-02-29)
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s Running under: Ubuntu Noble Numbat (development branch)
285s 
285s Matrix products: default
285s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
285s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
285s 
285s locale:
285s [1] C
285s 
285s time zone: Etc/UTC
285s tzcode source: system (glibc)
285s 
285s attached base packages:
285s [1] stats     graphics  grDevices utils     datasets  methods   base     
285s 
285s other attached packages:
285s [1] git2r_0.33.0
285s 
285s loaded via a namespace (and not attached):
285s [1] compiler_4.3.3
285s > libgit2_version()
285s $major
285s [1] 1
285s 
285s $minor
285s [1] 7
285s 
285s $rev
285s [1] 2
285s 
285s > libgit2_features()
285s $threads
285s [1] TRUE
285s 
285s $https
285s [1] TRUE
285s 
285s $ssh
285s [1] TRUE
285s 
285s > 
285s > 
285s > ## Check printing of a class git_signature
285s > when <- structure(list(time = 1395567947, offset = 60),
285s +                   class = "git_time")
285s > 
285s > signature <- structure(list(name = "Alice",
285s +                             email = "alice@example.org",
285s +                             when = when),
285s +                        class = "git_signature")
285s > stopifnot(identical(print(signature), signature))
285s name:  Alice
285s email: alice@example.org
285s when:  2014-03-23 09:45:47 GMT
285s > 
285s BEGIN TEST stash.R
285s 
285s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
285s Copyright (C) 2024 The R Foundation for Statistical Computing
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s 
285s R is free software and comes with ABSOLUTELY NO WARRANTY.
285s You are welcome to redistribute it under certain conditions.
285s Type 'license()' or 'licence()' for distribution details.
285s 
285s R is a collaborative project with many contributors.
285s Type 'contributors()' for more information and
285s 'citation()' on how to cite R or R packages in publications.
285s 
285s Type 'demo()' for some demos, 'help()' for on-line help, or
285s 'help.start()' for an HTML browser interface to help.
285s Type 'q()' to quit R.
285s 
285s > ## git2r, R bindings to the libgit2 library.
285s > ## Copyright (C) 2013-2023 The git2r contributors
285s > ##
285s > ## This program is free software; you can redistribute it and/or modify
285s > ## it under the terms of the GNU General Public License, version 2,
285s > ## as published by the Free Software Foundation.
285s > ##
285s > ## git2r is distributed in the hope that it will be useful,
285s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
285s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
285s > ## GNU General Public License for more details.
285s > ##
285s > ## You should have received a copy of the GNU General Public License along
285s > ## with this program; if not, write to the Free Software Foundation, Inc.,
285s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
285s > 
285s > library("git2r")
285s > 
285s > ## For debugging
285s > sessionInfo()
285s R version 4.3.3 (2024-02-29)
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s Running under: Ubuntu Noble Numbat (development branch)
285s 
285s Matrix products: default
285s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
285s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
285s 
285s locale:
285s [1] C
285s 
285s time zone: Etc/UTC
285s tzcode source: system (glibc)
285s 
285s attached base packages:
285s [1] stats     graphics  grDevices utils     datasets  methods   base     
285s 
285s other attached packages:
285s [1] git2r_0.33.0
285s 
285s loaded via a namespace (and not attached):
285s [1] compiler_4.3.3
285s > libgit2_version()
285s $major
285s [1] 1
285s 
285s $minor
285s [1] 7
285s 
285s $rev
285s [1] 2
285s 
285s > libgit2_features()
285s $threads
285s [1] TRUE
285s 
285s $https
285s [1] TRUE
285s 
285s $ssh
285s [1] TRUE
285s 
285s > 
285s > 
285s > ## Create a directory in tempdir
285s > path <- tempfile(pattern = "git2r-")
285s > dir.create(path)
285s > 
285s > ## Initialize a repository
285s > repo <- init(path)
285s > config(repo, user.name = "Alice", user.email = "alice@example.org")
285s > 
285s > ## Create a file
285s > writeLines("Hello world!", file.path(path, "test-1.txt"))
285s > 
285s > ## add and commit
285s > add(repo, "test-1.txt")
285s > commit(repo, "Commit message")
285s [04518fd] 2024-03-23: Commit message
285s > 
285s > ## Pop stash
285s > writeLines(c("Hello world!", "HELLO WORLD!"), file.path(path, "test-1.txt"))
285s > stash(repo)
285s > stopifnot(identical("Hello world!",
285s +                     readLines(file.path(path, "test-1.txt"))))
285s > stash_pop(repo)
285s > stopifnot(identical(c("Hello world!", "HELLO WORLD!"),
285s +                     readLines(file.path(path, "test-1.txt"))))
285s > 
285s > ## Make one more commit
285s > add(repo, "test-1.txt")
285s > commit(repo, "Next commit message")
285s [84f94f3] 2024-03-23: Next commit message
285s > 
285s > ## Check that there are no stashes
285s > stopifnot(identical(stash_list(repo), list()))
285s > 
285s > ## Apply stash
285s > writeLines(c("Hello world!", "HELLO WORLD!", "hello world!"),
285s +            file.path(path, "test-1.txt"))
285s > stash(repo)
285s > stopifnot(identical(c("Hello world!", "HELLO WORLD!"),
285s +                     readLines(file.path(path, "test-1.txt"))))
285s > stash_apply(repo)
285s > stopifnot(identical(c("Hello world!", "HELLO WORLD!", "hello world!"),
285s +                     readLines(file.path(path, "test-1.txt"))))
285s > stopifnot(identical(length(stash_list(repo)), 1L))
285s > stash_drop(repo, 1)
285s > stopifnot(identical(stash_list(repo), list()))
285s > 
285s > ## Make one more commit
285s > add(repo, "test-1.txt")
285s > commit(repo, "Apply stash commit message")
285s [7a19f51] 2024-03-23: Apply stash commit message
285s > 
285s > ## Create one more file
285s > writeLines("Hello world!", file.path(path, "test-2.txt"))
285s > 
285s > ## Check that there are no stashes
285s > stopifnot(identical(stash_list(repo), list()))
285s > 
285s > ## Stash
285s > stash(repo)
285s > stopifnot(identical(stash_list(repo), list()))
285s > s <- stash(repo, untracked = TRUE)
285s > stopifnot(identical(print(s), s))
285s On master: 2024-03-23 01:15:03.840352
285s 
285s > summary(s)
285s message: On master: 2024-03-23 01:15:03.840352
285s stasher: Alice <alice@example.org>
285s when:    2024-03-23 01:15:03 GMT
285s sha:     190181ea28b59633d334b728aa31f791568905b7
285s 
285s > stopifnot(identical(length(stash_list(repo)), 1L))
285s > tree(stash_list(repo)[[1]])
285s tree: af5711badde07055d853088e98c6d988bfdd139f
285s 
285s     mode type                                      sha       name
285s 1 100644 blob 5b168e5ff4e9eeff020b99a3c1c83c4979294e76 test-1.txt
285s > 
285s > ## Drop stash
285s > stash_drop(repo, 1)
285s > stopifnot(identical(stash_list(repo), list()))
285s > 
285s > ## Check stash_drop argument
285s > tools::assertError(stash_drop(repo))
285s > tools::assertError(stash_drop(repo, -1))
285s > tools::assertError(stash_drop(repo, 0.5))
285s > 
285s > ## Create one more file
285s > writeLines("Hello world!", file.path(path, "test-3.txt"))
285s > 
285s > ## Create stash in repository
285s > stash(repo, untracked = TRUE)
285s > stopifnot(identical(length(stash_list(repo)), 1L))
285s > 
285s > ## Check stash_list method with missing repo argument
285s > wd <- setwd(path)
285s > stopifnot(identical(length(stash_list()), 1L))
285s > if (!is.null(wd))
285s +     setwd(wd)
285s > 
285s > ## Drop git_stash object in repository
285s > stash_drop(stash_list(repo)[[1]])
285s > 
285s > ## Cleanup
285s > unlink(path, recursive = TRUE)
285s > 
285s BEGIN TEST status.R
285s 
285s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
285s Copyright (C) 2024 The R Foundation for Statistical Computing
285s Platform: arm-unknown-linux-gnueabihf (32-bit)
285s 
285s R is free software and comes with ABSOLUTELY NO WARRANTY.
285s You are welcome to redistribute it under certain conditions.
285s Type 'license()' or 'licence()' for distribution details.
285s 
285s R is a collaborative project with many contributors.
285s Type 'contributors()' for more information and
285s 'citation()' on how to cite R or R packages in publications.
285s 
285s Type 'demo()' for some demos, 'help()' for on-line help, or
285s 'help.start()' for an HTML browser interface to help.
285s Type 'q()' to quit R.
285s 
286s > ## git2r, R bindings to the libgit2 library.
286s > ## Copyright (C) 2013-2023 The git2r contributors
286s > ##
286s > ## This program is free software; you can redistribute it and/or modify
286s > ## it under the terms of the GNU General Public License, version 2,
286s > ## as published by the Free Software Foundation.
286s > ##
286s > ## git2r is distributed in the hope that it will be useful,
286s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
286s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
286s > ## GNU General Public License for more details.
286s > ##
286s > ## You should have received a copy of the GNU General Public License along
286s > ## with this program; if not, write to the Free Software Foundation, Inc.,
286s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
286s > 
286s > library(git2r)
286s > source("util/check.R")
286s > 
286s > ## For debugging
286s > sessionInfo()
286s R version 4.3.3 (2024-02-29)
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s Running under: Ubuntu Noble Numbat (development branch)
286s 
286s Matrix products: default
286s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
286s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
286s 
286s locale:
286s [1] C
286s 
286s time zone: Etc/UTC
286s tzcode source: system (glibc)
286s 
286s attached base packages:
286s [1] stats     graphics  grDevices utils     datasets  methods   base     
286s 
286s other attached packages:
286s [1] git2r_0.33.0
286s 
286s loaded via a namespace (and not attached):
286s [1] compiler_4.3.3
286s > libgit2_version()
286s $major
286s [1] 1
286s 
286s $minor
286s [1] 7
286s 
286s $rev
286s [1] 2
286s 
286s > libgit2_features()
286s $threads
286s [1] TRUE
286s 
286s $https
286s [1] TRUE
286s 
286s $ssh
286s [1] TRUE
286s 
286s > 
286s > 
286s > ## Create a directory in tempdir
286s > path <- tempfile(pattern = "git2r-")
286s > dir.create(path)
286s > 
286s > ## Initialize a repository
286s > repo <- init(path)
286s > config(repo, user.name = "Alice", user.email = "alice@example.org")
286s > 
286s > ## Status case 1
286s > status_exp_1 <- structure(list(staged = empty_named_list(),
286s +                                unstaged = empty_named_list(),
286s +                                untracked = empty_named_list()),
286s +                           class = "git_status")
286s > status_obs_1 <- status(repo)
286s > stopifnot(identical(print(status_obs_1), status_obs_1))
286s working directory clean
286s > str(status_exp_1)
286s List of 3
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked: Named list()
286s  - attr(*, "class")= chr "git_status"
286s > str(status_obs_1)
286s List of 3
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked: Named list()
286s  - attr(*, "class")= chr "git_status"
286s > stopifnot(identical(status_obs_1, status_exp_1))
286s > stopifnot(identical(capture.output(status(repo)),
286s +                     "working directory clean"))
286s > 
286s > ## Status case 2, include ignored files
286s > status_exp_2 <- structure(list(staged = empty_named_list(),
286s +                                unstaged = empty_named_list(),
286s +                                untracked = empty_named_list(),
286s +                                ignored = empty_named_list()),
286s +                           class = "git_status")
286s > status_obs_2 <- status(repo, ignored = TRUE)
286s > status_obs_2
286s working directory clean
286s > str(status_exp_2)
286s List of 4
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked: Named list()
286s  $ ignored  : Named list()
286s  - attr(*, "class")= chr "git_status"
286s > str(status_obs_2)
286s List of 4
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked: Named list()
286s  $ ignored  : Named list()
286s  - attr(*, "class")= chr "git_status"
286s > stopifnot(identical(status_obs_2, status_exp_2))
286s > stopifnot(identical(capture.output(status(repo, ignored = TRUE)),
286s +                     "working directory clean"))
286s > 
286s > ## Create 4 files
286s > writeLines("File-1", file.path(path, "test-1.txt"))
286s > writeLines("File-2", file.path(path, "test-2.txt"))
286s > writeLines("File-3", file.path(path, "test-3.txt"))
286s > writeLines("File-4", file.path(path, "test-4.txt"))
286s > 
286s > ## Status case 3: 4 untracked files
286s > status_exp_3 <- structure(list(staged = empty_named_list(),
286s +                                unstaged = empty_named_list(),
286s +                                untracked = list(untracked = "test-1.txt",
286s +                                                 untracked = "test-2.txt",
286s +                                                 untracked = "test-3.txt",
286s +                                                 untracked = "test-4.txt")),
286s +                           class = "git_status")
286s > status_obs_3 <- status(repo)
286s > status_obs_3
286s Untracked files:
286s 	Untracked:  test-1.txt
286s 	Untracked:  test-2.txt
286s 	Untracked:  test-3.txt
286s 	Untracked:  test-4.txt
286s 
286s > str(status_exp_3)
286s List of 3
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked:List of 4
286s   ..$ untracked: chr "test-1.txt"
286s   ..$ untracked: chr "test-2.txt"
286s   ..$ untracked: chr "test-3.txt"
286s   ..$ untracked: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > str(status_obs_3)
286s List of 3
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked:List of 4
286s   ..$ untracked: chr "test-1.txt"
286s   ..$ untracked: chr "test-2.txt"
286s   ..$ untracked: chr "test-3.txt"
286s   ..$ untracked: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > stopifnot(identical(status_obs_3, status_exp_3))
286s > 
286s > ## Add file 1 and 2 to the repository and commit
286s > add(repo, c("test-1.txt", "test-2.txt"))
286s > commit(repo, "Commit message")
286s [a326af9] 2024-03-23: Commit message
286s > 
286s > ## Status case 4: 2 untracked files
286s > status_exp_4 <- structure(list(staged = empty_named_list(),
286s +                                unstaged = empty_named_list(),
286s +                                untracked = list(untracked = "test-3.txt",
286s +                                                 untracked = "test-4.txt")),
286s +                           class = "git_status")
286s > status_obs_4 <- status(repo)
286s > status_obs_4
286s Untracked files:
286s 	Untracked:  test-3.txt
286s 	Untracked:  test-4.txt
286s 
286s > str(status_exp_4)
286s List of 3
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked:List of 2
286s   ..$ untracked: chr "test-3.txt"
286s   ..$ untracked: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > str(status_obs_4)
286s List of 3
286s  $ staged   : Named list()
286s  $ unstaged : Named list()
286s  $ untracked:List of 2
286s   ..$ untracked: chr "test-3.txt"
286s   ..$ untracked: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > stopifnot(identical(status_obs_4, status_exp_4))
286s > 
286s > ## Update file 1 & 2
286s > writeLines(c("File-1", "Hello world"), file.path(path, "test-1.txt"))
286s > writeLines(c("File-2", "Hello world"), file.path(path, "test-2.txt"))
286s > 
286s > ## Add file 1
286s > add(repo, "test-1.txt")
286s > 
286s > ## Status case 5: 1 staged file, 1 unstaged file and 2 untracked files
286s > status_exp_5 <- structure(list(staged = list(modified = "test-1.txt"),
286s +                                unstaged = list(modified = "test-2.txt"),
286s +                                untracked = list(untracked = "test-3.txt",
286s +                                                 untracked = "test-4.txt")),
286s +                           class = "git_status")
286s > status_obs_5 <- status(repo)
286s > status_obs_5
286s Untracked files:
286s 	Untracked:  test-3.txt
286s 	Untracked:  test-4.txt
286s 
286s Unstaged changes:
286s 	Modified:   test-2.txt
286s 
286s Staged changes:
286s 	Modified:   test-1.txt
286s 
286s > str(status_exp_5)
286s List of 3
286s  $ staged   :List of 1
286s   ..$ modified: chr "test-1.txt"
286s  $ unstaged :List of 1
286s   ..$ modified: chr "test-2.txt"
286s  $ untracked:List of 2
286s   ..$ untracked: chr "test-3.txt"
286s   ..$ untracked: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > str(status_obs_5)
286s List of 3
286s  $ staged   :List of 1
286s   ..$ modified: chr "test-1.txt"
286s  $ unstaged :List of 1
286s   ..$ modified: chr "test-2.txt"
286s  $ untracked:List of 2
286s   ..$ untracked: chr "test-3.txt"
286s   ..$ untracked: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > stopifnot(identical(status_obs_5, status_exp_5))
286s > 
286s > ## Add .gitignore file with file test-4.txt
286s > writeLines("test-4.txt", file.path(path, ".gitignore"))
286s > 
286s > ## Status case 6: 1 staged file, 1 unstaged file, 2 untracked files
286s > ## and 1 ignored file
286s > status_exp_6 <- structure(list(staged = list(modified = "test-1.txt"),
286s +                                unstaged = list(modified = "test-2.txt"),
286s +                                untracked = list(untracked = ".gitignore",
286s +                                                 untracked = "test-3.txt"),
286s +                                ignored = list(ignored = "test-4.txt")),
286s +                           class = "git_status")
286s > status_obs_6 <- status(repo, ignore = TRUE)
286s > status_obs_6
286s Ignored files:
286s 	Ignored:    test-4.txt
286s 
286s Untracked files:
286s 	Untracked:  .gitignore
286s 	Untracked:  test-3.txt
286s 
286s Unstaged changes:
286s 	Modified:   test-2.txt
286s 
286s Staged changes:
286s 	Modified:   test-1.txt
286s 
286s > str(status_exp_6)
286s List of 4
286s  $ staged   :List of 1
286s   ..$ modified: chr "test-1.txt"
286s  $ unstaged :List of 1
286s   ..$ modified: chr "test-2.txt"
286s  $ untracked:List of 2
286s   ..$ untracked: chr ".gitignore"
286s   ..$ untracked: chr "test-3.txt"
286s  $ ignored  :List of 1
286s   ..$ ignored: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > str(status_obs_6)
286s List of 4
286s  $ staged   :List of 1
286s   ..$ modified: chr "test-1.txt"
286s  $ unstaged :List of 1
286s   ..$ modified: chr "test-2.txt"
286s  $ untracked:List of 2
286s   ..$ untracked: chr ".gitignore"
286s   ..$ untracked: chr "test-3.txt"
286s  $ ignored  :List of 1
286s   ..$ ignored: chr "test-4.txt"
286s  - attr(*, "class")= chr "git_status"
286s > stopifnot(identical(status_obs_6, status_exp_6))
286s > 
286s > ## Cleanup
286s > unlink(path, recursive = TRUE)
286s > 
286s BEGIN TEST tag.R
286s 
286s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
286s Copyright (C) 2024 The R Foundation for Statistical Computing
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s 
286s R is free software and comes with ABSOLUTELY NO WARRANTY.
286s You are welcome to redistribute it under certain conditions.
286s Type 'license()' or 'licence()' for distribution details.
286s 
286s R is a collaborative project with many contributors.
286s Type 'contributors()' for more information and
286s 'citation()' on how to cite R or R packages in publications.
286s 
286s Type 'demo()' for some demos, 'help()' for on-line help, or
286s 'help.start()' for an HTML browser interface to help.
286s Type 'q()' to quit R.
286s 
286s > ## git2r, R bindings to the libgit2 library.
286s > ## Copyright (C) 2013-2023 The git2r contributors
286s > ##
286s > ## This program is free software; you can redistribute it and/or modify
286s > ## it under the terms of the GNU General Public License, version 2,
286s > ## as published by the Free Software Foundation.
286s > ##
286s > ## git2r is distributed in the hope that it will be useful,
286s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
286s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
286s > ## GNU General Public License for more details.
286s > ##
286s > ## You should have received a copy of the GNU General Public License along
286s > ## with this program; if not, write to the Free Software Foundation, Inc.,
286s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
286s > 
286s > library(git2r)
286s > source("util/check.R")
286s > 
286s > ## For debugging
286s > sessionInfo()
286s R version 4.3.3 (2024-02-29)
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s Running under: Ubuntu Noble Numbat (development branch)
286s 
286s Matrix products: default
286s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
286s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
286s 
286s locale:
286s [1] C
286s 
286s time zone: Etc/UTC
286s tzcode source: system (glibc)
286s 
286s attached base packages:
286s [1] stats     graphics  grDevices utils     datasets  methods   base     
286s 
286s other attached packages:
286s [1] git2r_0.33.0
286s 
286s loaded via a namespace (and not attached):
286s [1] compiler_4.3.3
286s > libgit2_version()
286s $major
286s [1] 1
286s 
286s $minor
286s [1] 7
286s 
286s $rev
286s [1] 2
286s 
286s > libgit2_features()
286s $threads
286s [1] TRUE
286s 
286s $https
286s [1] TRUE
286s 
286s $ssh
286s [1] TRUE
286s 
286s > 
286s > 
286s > ## Create a directory in tempdir
286s > path <- tempfile(pattern = "git2r-")
286s > dir.create(path)
286s > 
286s > ## Initialize a repository
286s > repo <- init(path)
286s > config(repo, user.name = "Alice", user.email = "alice@example.org")
286s > 
286s > ## Create a file
286s > writeLines("Hello world!", file.path(path, "test.txt"))
286s > 
286s > ## add and commit
286s > add(repo, "test.txt")
286s > commit(repo, "Commit message")
286s [fba1450] 2024-03-23: Commit message
286s > 
286s > ## Check tags, no tag added
286s > stopifnot(identical(tags(repo), empty_named_list()))
286s > 
286s > ## Create tag
286s > new_tag <- tag(repo, "Tagname", "Tag message")
286s > stopifnot(identical(print(new_tag), new_tag))
286s [fba145] Tagname
286s > summary(new_tag)
286s name:    Tagname
286s target:  fba1450410a42ebe122f5619a239f0875b7b5ae2
286s tagger:  Alice <alice@example.org>
286s when:    2024-03-23 01:15:04 GMT
286s message: Tag message
286s > 
286s > ## Check tag
286s > stopifnot(identical(lookup(repo, sha(new_tag)), new_tag))
286s > stopifnot(identical(new_tag$name, "Tagname"))
286s > stopifnot(identical(new_tag$message, "Tag message"))
286s > stopifnot(identical(new_tag$tagger$name, "Alice"))
286s > stopifnot(identical(new_tag$tagger$email, "alice@example.org"))
286s > stopifnot(identical(length(tags(repo)), 1L))
286s > stopifnot(identical(tags(repo)[[1]]$name, "Tagname"))
286s > stopifnot(identical(tags(repo)[[1]]$message, "Tag message"))
286s > stopifnot(identical(tags(repo)[[1]]$tagger$name, "Alice"))
286s > stopifnot(identical(tags(repo)[[1]]$tagger$email, "alice@example.org"))
286s > 
286s > ## Check objects in object database
286s > stopifnot(identical(table(odb_objects(repo)$type),
286s +                     structure(c(1L, 1L, 1L, 1L),
286s +                               .Dim = 4L,
286s +                               .Dimnames = structure(list(
286s +                                   c("blob", "commit", "tag", "tree")),
286s +                                   .Names = ""),
286s +                               class = "table")))
286s > 
286s > ## Delete tag
286s > tag_delete(new_tag)
286s > stopifnot(identical(length(tags(repo)), 0L))
286s > 
286s > ## Create tag with session info
286s > tag(repo, "Tagname", "Tag message", session = TRUE)
286s > stopifnot(grep("git2r", tags(repo)[[1]]$message) > 0)
286s > 
286s > ## Check tags method with default repo argument
286s > wd <- setwd(path)
286s > stopifnot(identical(length(tags()), 1L))
286s > tag_delete(name = "Tagname")
286s > stopifnot(identical(length(tags()), 0L))
286s > if (!is.null(wd))
286s +     setwd(wd)
286s > 
286s > ## Cleanup
286s > unlink(path, recursive = TRUE)
286s > 
286s BEGIN TEST time.R
286s 
286s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
286s Copyright (C) 2024 The R Foundation for Statistical Computing
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s 
286s R is free software and comes with ABSOLUTELY NO WARRANTY.
286s You are welcome to redistribute it under certain conditions.
286s Type 'license()' or 'licence()' for distribution details.
286s 
286s R is a collaborative project with many contributors.
286s Type 'contributors()' for more information and
286s 'citation()' on how to cite R or R packages in publications.
286s 
286s Type 'demo()' for some demos, 'help()' for on-line help, or
286s 'help.start()' for an HTML browser interface to help.
286s Type 'q()' to quit R.
286s 
286s > ## git2r, R bindings to the libgit2 library.
286s > ## Copyright (C) 2013-2023 The git2r contributors
286s > ##
286s > ## This program is free software; you can redistribute it and/or modify
286s > ## it under the terms of the GNU General Public License, version 2,
286s > ## as published by the Free Software Foundation.
286s > ##
286s > ## git2r is distributed in the hope that it will be useful,
286s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
286s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
286s > ## GNU General Public License for more details.
286s > ##
286s > ## You should have received a copy of the GNU General Public License along
286s > ## with this program; if not, write to the Free Software Foundation, Inc.,
286s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
286s > 
286s > library(git2r)
286s > 
286s > ## For debugging
286s > sessionInfo()
286s R version 4.3.3 (2024-02-29)
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s Running under: Ubuntu Noble Numbat (development branch)
286s 
286s Matrix products: default
286s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
286s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
286s 
286s locale:
286s [1] C
286s 
286s time zone: Etc/UTC
286s tzcode source: system (glibc)
286s 
286s attached base packages:
286s [1] stats     graphics  grDevices utils     datasets  methods   base     
286s 
286s other attached packages:
286s [1] git2r_0.33.0
286s 
286s loaded via a namespace (and not attached):
286s [1] compiler_4.3.3
286s > libgit2_version()
286s $major
286s [1] 1
286s 
286s $minor
286s [1] 7
286s 
286s $rev
286s [1] 2
286s 
286s > libgit2_features()
286s $threads
286s [1] TRUE
286s 
286s $https
286s [1] TRUE
286s 
286s $ssh
286s [1] TRUE
286s 
286s > 
286s > 
286s > ## Test to coerce
286s > git_t <- structure(list(time = 1395567947, offset = 60),
286s +                    class = "git_time")
286s > stopifnot(identical(as.character(git_t), "2014-03-23 09:45:47 GMT"))
286s > stopifnot(identical(as.character(git_t, usetz = FALSE), "2014-03-23 09:45:47"))
286s > stopifnot(identical(as.POSIXct(git_t),
286s +                     as.POSIXct(1395567947, tz = "GMT", origin = "1970-01-01")))
286s > stopifnot(identical(print(git_t), git_t))
286s 2014-03-23 09:45:47 GMT
286s > 
286s > as.POSIXct(1395567947, origin = "1970-01-01", tz = "-03")
286s [1] "2014-03-23 09:45:47"
286s > 
286s > ## Test that origin/tz can be passed to as.POSIXct
286s > stopifnot(identical(as.POSIXct(git_t, tz = "Europe/Stockholm",
286s +                                origin = "1980-02-02"),
286s +                     as.POSIXct(1395567947, tz = "Europe/Stockholm",
286s +                                origin = "1980-02-02")))
286s > 
286s > ## Test that origin/tz can be passed to as.character
286s > stopifnot(identical(as.character(git_t, tz = "Europe/Stockholm",
286s +                                  origin = "1980-02-02"),
286s +                     "2024-04-23 11:45:47 CEST"))
286s > stopifnot(identical(as.character(git_t, tz = "Europe/Stockholm",
286s +                                  origin = "1980-02-02", usetz = FALSE),
286s +                     "2024-04-23 11:45:47"))
286s > 
286s > ## Test that origin/tz can be passed to print
286s > stopifnot(identical(
286s +     utils::capture.output(print(git_t, tz = "Europe/Stockholm",
286s +                                 origin = "1980-02-02")),
286s +     "2024-04-23 11:45:47 CEST"
286s + ))
286s > stopifnot(identical(
286s +     utils::capture.output(print(git_t, tz = "Europe/Stockholm",
286s +                                 origin = "1980-02-02", usetz = FALSE)),
286s +     "2024-04-23 11:45:47"
286s + ))
286s > 
286s BEGIN TEST tree.R
286s 
286s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
286s Copyright (C) 2024 The R Foundation for Statistical Computing
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s 
286s R is free software and comes with ABSOLUTELY NO WARRANTY.
286s You are welcome to redistribute it under certain conditions.
286s Type 'license()' or 'licence()' for distribution details.
286s 
286s R is a collaborative project with many contributors.
286s Type 'contributors()' for more information and
286s 'citation()' on how to cite R or R packages in publications.
286s 
286s Type 'demo()' for some demos, 'help()' for on-line help, or
286s 'help.start()' for an HTML browser interface to help.
286s Type 'q()' to quit R.
286s 
286s > ## git2r, R bindings to the libgit2 library.
286s > ## Copyright (C) 2013-2023 The git2r contributors
286s > ##
286s > ## This program is free software; you can redistribute it and/or modify
286s > ## it under the terms of the GNU General Public License, version 2,
286s > ## as published by the Free Software Foundation.
286s > ##
286s > ## git2r is distributed in the hope that it will be useful,
286s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
286s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
286s > ## GNU General Public License for more details.
286s > ##
286s > ## You should have received a copy of the GNU General Public License along
286s > ## with this program; if not, write to the Free Software Foundation, Inc.,
286s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
286s > 
286s > library("git2r")
286s > 
286s > ## For debugging
286s > sessionInfo()
286s R version 4.3.3 (2024-02-29)
286s Platform: arm-unknown-linux-gnueabihf (32-bit)
286s Running under: Ubuntu Noble Numbat (development branch)
286s 
286s Matrix products: default
286s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
286s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
286s 
286s locale:
286s [1] C
286s 
286s time zone: Etc/UTC
286s tzcode source: system (glibc)
286s 
286s attached base packages:
286s [1] stats     graphics  grDevices utils     datasets  methods   base     
286s 
286s other attached packages:
286s [1] git2r_0.33.0
286s 
286s loaded via a namespace (and not attached):
286s [1] compiler_4.3.3
286s > libgit2_version()
286s $major
286s [1] 1
286s 
286s $minor
286s [1] 7
286s 
286s $rev
286s [1] 2
286s 
286s > libgit2_features()
286s $threads
286s [1] TRUE
286s 
286s $https
286s [1] TRUE
286s 
286s $ssh
286s [1] TRUE
286s 
286s > 
286s > 
286s > ## Create a directory in tempdir
286s > path <- tempfile(pattern = "git2r-")
286s > dir.create(path)
286s > 
286s > ## Initialize a repository
286s > repo <- init(path)
286s > config(repo, user.name = "Alice", user.email = "alice@example.org")
286s > 
286s > ## Create a file
286s > f <- file(file.path(path, "test.txt"), "wb")
286s > writeChar("Hello world!\n", f, eos = NULL)
286s > close(f)
286s > 
286s > ## add and commit
286s > add(repo, "test.txt")
286s > commit(repo, "Commit message")
286s [fba1450] 2024-03-23: Commit message
286s > 
286s > ## Check tree
286s > stopifnot(is_tree(lookup(repo, "a0b0b9e615e9e433eb5f11859e9feac4564c58c5")))
286s > stopifnot(identical(
286s +     sha(lookup(repo, "a0b0b9e615e9e433eb5f11859e9feac4564c58c5")),
286s +     "a0b0b9e615e9e433eb5f11859e9feac4564c58c5"))
286s > stopifnot(is_tree(tree(commits(repo)[[1]])))
286s > stopifnot(identical(lookup(repo, "a0b0b9e615e9e433eb5f11859e9feac4564c58c5"),
286s +                     tree(commits(repo)[[1]])))
286s > stopifnot(identical(length(tree(commits(repo)[[1]])), 1L))
286s > 
286s > ## Coerce to a data.frame and check column names
286s > stopifnot(identical(names(as.data.frame(tree(commits(repo)[[1]]))),
286s +                     c("mode", "type", "sha", "name")))
286s > 
286s > ## Coerce to list and check length
286s > stopifnot(identical(length(as.list(tree(last_commit(repo)))), 1L))
286s > 
286s > ## Print and summary
286s > stopifnot(identical(print(tree(last_commit(repo))), tree(last_commit(repo))))
286s tree: a0b0b9e615e9e433eb5f11859e9feac4564c58c5
286s 
286s     mode type                                      sha     name
286s 1 100644 blob cd0875583aabe89ee197ea133980a9085d08e497 test.txt
286s > summary(tree(last_commit(repo)))
286s     mode type                                      sha     name
286s 1 100644 blob cd0875583aabe89ee197ea133980a9085d08e497 test.txt
286s > 
286s > ## Check indexing
286s > stopifnot(is_blob(tree(last_commit(repo))[TRUE]))
286s > stopifnot(is_blob(tree(last_commit(repo))["test.txt"]))
286s > res <- tools::assertError(tree(last_commit(repo))[data.frame()])
286s > stopifnot(length(grep("Invalid index", res[[1]]$message)) > 0)
286s > 
286s > ## Check ls_tree
286s > stopifnot(identical(ls_tree(repo = repo), ls_tree(repo = path)))
286s > stopifnot(identical(ls_tree(tree = sha(tree(last_commit(repo))), repo = repo),
286s +                     ls_tree(repo = repo)))
287s > 
287s > ## Cleanup
287s > unlink(path, recursive = TRUE)
287s > 
287s BEGIN TEST when.R
287s 
287s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
287s Copyright (C) 2024 The R Foundation for Statistical Computing
287s Platform: arm-unknown-linux-gnueabihf (32-bit)
287s 
287s R is free software and comes with ABSOLUTELY NO WARRANTY.
287s You are welcome to redistribute it under certain conditions.
287s Type 'license()' or 'licence()' for distribution details.
287s 
287s R is a collaborative project with many contributors.
287s Type 'contributors()' for more information and
287s 'citation()' on how to cite R or R packages in publications.
287s 
287s Type 'demo()' for some demos, 'help()' for on-line help, or
287s 'help.start()' for an HTML browser interface to help.
287s Type 'q()' to quit R.
287s 
287s > ## git2r, R bindings to the libgit2 library.
287s > ## Copyright (C) 2013-2023 The git2r contributors
287s > ##
287s > ## This program is free software; you can redistribute it and/or modify
287s > ## it under the terms of the GNU General Public License, version 2,
287s > ## as published by the Free Software Foundation.
287s > ##
287s > ## git2r is distributed in the hope that it will be useful,
287s > ## but WITHOUT ANY WARRANTY; without even the implied warranty of
287s > ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
287s > ## GNU General Public License for more details.
287s > ##
287s > ## You should have received a copy of the GNU General Public License along
287s > ## with this program; if not, write to the Free Software Foundation, Inc.,
287s > ## 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
287s > 
287s > library("git2r")
287s > 
287s > ## For debugging
287s > sessionInfo()
287s R version 4.3.3 (2024-02-29)
287s Platform: arm-unknown-linux-gnueabihf (32-bit)
287s Running under: Ubuntu Noble Numbat (development branch)
287s 
287s Matrix products: default
287s BLAS:   /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3.12.0 
287s LAPACK: /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3.12.0
287s 
287s locale:
287s [1] C
287s 
287s time zone: Etc/UTC
287s tzcode source: system (glibc)
287s 
287s attached base packages:
287s [1] stats     graphics  grDevices utils     datasets  methods   base     
287s 
287s other attached packages:
287s [1] git2r_0.33.0
287s 
287s loaded via a namespace (and not attached):
287s [1] compiler_4.3.3
287s > libgit2_version()
287s $major
287s [1] 1
287s 
287s $minor
287s [1] 7
287s 
287s $rev
287s [1] 2
287s 
287s > libgit2_features()
287s $threads
287s [1] TRUE
287s 
287s $https
287s [1] TRUE
287s 
287s $ssh
287s [1] TRUE
287s 
287s > 
287s > 
287s > ## Check when method
287s > w1 <- structure(list(time = 1395567947, offset = 60),
287s +                class = "git_time")
287s > stopifnot(identical(when(w1), "2014-03-23 09:45:47 GMT"))
287s > stopifnot(identical(when(w1, usetz = FALSE), "2014-03-23 09:45:47"))
287s > stopifnot(identical(when(w1, tz = "Europe/Stockholm", origin = "1980-02-02"),
287s +                     "2024-04-23 11:45:47 CEST"))
287s > 
287s > s1 <- structure(list(name = "Alice", email = "alice@example.org", when = w1),
287s +                 class = "git_signature")
287s > stopifnot(identical(when(s1), "2014-03-23 09:45:47 GMT"))
287s > stopifnot(identical(when(s1, usetz = FALSE), "2014-03-23 09:45:47"))
287s > stopifnot(identical(when(s1, tz = "Europe/Stockholm", origin = "1980-02-02"),
287s +                     "2024-04-23 11:45:47 CEST"))
287s > 
287s > w2 <- structure(list(time = 1395567950, offset = 60),
287s +                class = "git_time")
287s > s2 <- structure(list(name = "Alice", email = "alice@example.org", when = w2),
287s +                 class = "git_signature")
287s > c1 <- structure(list(sha = "166f3f779fd7e4165aaa43f2828050ce040052b0",
287s +                      author = s1,
287s +                      committer = s2,
287s +                      summary = "A commit summary",
287s +                      message = "A commit message"),
287s +                 class = "git_commit")
287s > stopifnot(identical(when(c1), "2014-03-23 09:45:47 GMT"))
287s > stopifnot(identical(when(c1, usetz = FALSE), "2014-03-23 09:45:47"))
287s > stopifnot(identical(when(c1, tz = "Europe/Stockholm", origin = "1980-02-02"),
287s +                     "2024-04-23 11:45:47 CEST"))
287s > 
287s > t1 <- structure(list(sha = "166f3f779fd7e4165aaa43f2828050ce040052b0",
287s +                      message = "A tag message",
287s +                      name = "A tage name",
287s +                      tagger = s1,
287s +                      target = "166f3f779fd7e4165aaa43f2828050ce040052b0"),
287s +                 class = "git_tag")
287s > stopifnot(identical(when(t1), "2014-03-23 09:45:47 GMT"))
287s > stopifnot(identical(when(t1, usetz = FALSE), "2014-03-23 09:45:47"))
287s > stopifnot(identical(when(t1, tz = "Europe/Stockholm", origin = "1980-02-02"),
287s +                     "2024-04-23 11:45:47 CEST"))
287s > 
287s autopkgtest [01:15:05]: test run-unit-test: -----------------------]
291s autopkgtest [01:15:09]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
291s run-unit-test        PASS
294s autopkgtest [01:15:12]: test pkg-r-autopkgtest: preparing testbed
304s Reading package lists...
304s Building dependency tree...
304s Reading state information...
305s Starting pkgProblemResolver with broken count: 0
305s Starting 2 pkgProblemResolver with broken count: 0
305s Done
305s The following additional packages will be installed:
305s   build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
305s   cpp-arm-linux-gnueabihf dctrl-tools g++ g++-13 g++-13-arm-linux-gnueabihf
305s   g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf
305s   gcc-arm-linux-gnueabihf gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf
305s   gfortran-arm-linux-gnueabihf icu-devtools libasan8 libatomic1 libblas-dev
305s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
305s   libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev
305s   libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0
305s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev
305s   libreadline-dev libstdc++-13-dev libubsan1 linux-libc-dev pkg-config
306s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
306s Suggested packages:
306s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
306s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
306s   gdb-arm-linux-gnueabihf gfortran-doc gfortran-13-doc libcoarrays-dev
306s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
306s   libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic
306s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
306s   texlive-latex-recommended texlive-latex-extra texinfo
306s Recommended packages:
306s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools
306s The following NEW packages will be installed:
306s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
306s   cpp-arm-linux-gnueabihf dctrl-tools g++ g++-13 g++-13-arm-linux-gnueabihf
306s   g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf
306s   gcc-arm-linux-gnueabihf gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf
306s   gfortran-arm-linux-gnueabihf icu-devtools libasan8 libatomic1 libblas-dev
306s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
306s   libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev
306s   libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0
306s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev
306s   libreadline-dev libstdc++-13-dev libubsan1 linux-libc-dev pkg-config
306s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
306s 0 upgraded, 56 newly installed, 0 to remove and 1 not upgraded.
306s Need to get 74.3 MB/74.3 MB of archives.
306s After this operation, 232 MB of additional disk space will be used.
306s Get:1 /tmp/autopkgtest.nkTgZk/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B]
306s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-dev-bin armhf 2.39-0ubuntu6 [19.1 kB]
306s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-libc-dev armhf 6.8.0-20.20 [1555 kB]
306s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB]
306s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu6 [63.7 kB]
306s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6-dev armhf 2.39-0ubuntu6 [1351 kB]
306s Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libisl23 armhf 0.26-3 [595 kB]
306s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libmpc3 armhf 1.3.1-1 [46.4 kB]
306s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-19ubuntu1 [8753 kB]
306s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cpp-13 armhf 13.2.0-19ubuntu1 [1036 B]
306s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B]
306s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB]
306s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcc1-0 armhf 14-20240315-1ubuntu1 [39.0 kB]
306s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libatomic1 armhf 14-20240315-1ubuntu1 [7824 B]
306s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libasan8 armhf 14-20240315-1ubuntu1 [2941 kB]
307s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libubsan1 armhf 14-20240315-1ubuntu1 [1152 kB]
307s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-13-dev armhf 13.2.0-19ubuntu1 [900 kB]
307s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-19ubuntu1 [16.8 MB]
307s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13 armhf 13.2.0-19ubuntu1 [448 kB]
307s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B]
307s Get:21 http://ftpmaster.internal/ubuntu noble/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B]
307s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++-13-dev armhf 13.2.0-19ubuntu1 [2403 kB]
307s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-19ubuntu1 [9935 kB]
307s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf g++-13 armhf 13.2.0-19ubuntu1 [14.5 kB]
307s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B]
307s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B]
307s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf build-essential armhf 12.10ubuntu1 [4928 B]
307s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf dctrl-tools armhf 2.24-3build2 [57.2 kB]
307s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgfortran-13-dev armhf 13.2.0-19ubuntu1 [359 kB]
307s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-19ubuntu1 [9176 kB]
308s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gfortran-13 armhf 13.2.0-19ubuntu1 [10.4 kB]
308s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1024 B]
308s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf gfortran armhf 4:13.2.0-7ubuntu1 [1166 B]
308s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf icu-devtools armhf 74.2-1ubuntu1 [201 kB]
308s Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libblas-dev armhf 3.12.0-3 [132 kB]
308s Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-dev armhf 1.0.8-5ubuntu1 [30.4 kB]
308s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libicu-dev armhf 74.2-1ubuntu1 [11.6 MB]
308s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu1 [263 kB]
308s Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B]
308s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B]
308s Get:41 http://ftpmaster.internal/ubuntu noble/main armhf liblapack-dev armhf 3.12.0-3 [2177 kB]
308s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libncurses-dev armhf 6.4+20240113-1ubuntu1 [501 kB]
308s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-16-0 armhf 10.42-4ubuntu1 [180 kB]
308s Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-32-0 armhf 10.42-4ubuntu1 [171 kB]
308s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-posix3 armhf 10.42-4ubuntu1 [6096 B]
308s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-dev armhf 10.42-4ubuntu1 [664 kB]
308s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libpkgconf3 armhf 1.8.1-2 [26.3 kB]
308s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu1 [880 kB]
308s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng-dev armhf 1.6.43-3 [248 kB]
308s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline-dev armhf 8.2-3.1build1 [153 kB]
308s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf-bin armhf 1.8.1-2 [20.6 kB]
308s Get:52 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf armhf 1.8.1-2 [16.7 kB]
308s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf pkg-config armhf 1.8.1-2 [7170 B]
308s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma-dev armhf 5.6.0-0.2 [166 kB]
308s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf r-base-dev all 4.3.3-2build1 [4334 B]
308s Get:56 http://ftpmaster.internal/ubuntu noble/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
308s Fetched 74.3 MB in 2s (30.3 MB/s)
308s Selecting previously unselected package libc-dev-bin.
308s (Reading database ... 
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308s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_armhf.deb ...
308s Unpacking libc-dev-bin (2.39-0ubuntu6) ...
308s Selecting previously unselected package linux-libc-dev:armhf.
308s Preparing to unpack .../01-linux-libc-dev_6.8.0-20.20_armhf.deb ...
308s Unpacking linux-libc-dev:armhf (6.8.0-20.20) ...
309s Selecting previously unselected package libcrypt-dev:armhf.
309s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_armhf.deb ...
309s Unpacking libcrypt-dev:armhf (1:4.4.36-4) ...
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309s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
309s Selecting previously unselected package libc6-dev:armhf.
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309s Unpacking libc6-dev:armhf (2.39-0ubuntu6) ...
309s Selecting previously unselected package libisl23:armhf.
309s Preparing to unpack .../05-libisl23_0.26-3_armhf.deb ...
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309s Unpacking libmpc3:armhf (1.3.1-1) ...
309s Selecting previously unselected package cpp-13-arm-linux-gnueabihf.
309s Preparing to unpack .../07-cpp-13-arm-linux-gnueabihf_13.2.0-19ubuntu1_armhf.deb ...
309s Unpacking cpp-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
309s Selecting previously unselected package cpp-13.
309s Preparing to unpack .../08-cpp-13_13.2.0-19ubuntu1_armhf.deb ...
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309s Selecting previously unselected package cpp-arm-linux-gnueabihf.
309s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
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310s Unpacking gcc-13 (13.2.0-19ubuntu1) ...
310s Selecting previously unselected package gcc-arm-linux-gnueabihf.
310s Preparing to unpack .../18-gcc-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
310s Unpacking gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
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310s Unpacking gcc (4:13.2.0-7ubuntu1) ...
310s Selecting previously unselected package libstdc++-13-dev:armhf.
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310s Unpacking libstdc++-13-dev:armhf (13.2.0-19ubuntu1) ...
310s Selecting previously unselected package g++-13-arm-linux-gnueabihf.
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310s Unpacking g++-13 (13.2.0-19ubuntu1) ...
310s Selecting previously unselected package g++-arm-linux-gnueabihf.
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310s Selecting previously unselected package dctrl-tools.
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310s Selecting previously unselected package libgfortran-13-dev:armhf.
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310s Unpacking libgfortran-13-dev:armhf (13.2.0-19ubuntu1) ...
310s Selecting previously unselected package gfortran-13-arm-linux-gnueabihf.
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310s Unpacking gfortran-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
311s Selecting previously unselected package gfortran-13.
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311s Selecting previously unselected package gfortran-arm-linux-gnueabihf.
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311s Selecting previously unselected package gfortran.
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311s Selecting previously unselected package icu-devtools.
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311s Selecting previously unselected package libicu-dev:armhf.
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311s Unpacking libicu-dev:armhf (74.2-1ubuntu1) ...
311s Selecting previously unselected package libjpeg-turbo8-dev:armhf.
311s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-2ubuntu1_armhf.deb ...
311s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ...
311s Selecting previously unselected package libjpeg8-dev:armhf.
311s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ...
311s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ...
311s Selecting previously unselected package libjpeg-dev:armhf.
311s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ...
311s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ...
311s Selecting previously unselected package liblapack-dev:armhf.
311s Preparing to unpack .../39-liblapack-dev_3.12.0-3_armhf.deb ...
311s Unpacking liblapack-dev:armhf (3.12.0-3) ...
311s Selecting previously unselected package libncurses-dev:armhf.
311s Preparing to unpack .../40-libncurses-dev_6.4+20240113-1ubuntu1_armhf.deb ...
311s Unpacking libncurses-dev:armhf (6.4+20240113-1ubuntu1) ...
311s Selecting previously unselected package libpcre2-16-0:armhf.
311s Preparing to unpack .../41-libpcre2-16-0_10.42-4ubuntu1_armhf.deb ...
311s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu1) ...
311s Selecting previously unselected package libpcre2-32-0:armhf.
311s Preparing to unpack .../42-libpcre2-32-0_10.42-4ubuntu1_armhf.deb ...
311s Unpacking libpcre2-32-0:armhf (10.42-4ubuntu1) ...
311s Selecting previously unselected package libpcre2-posix3:armhf.
311s Preparing to unpack .../43-libpcre2-posix3_10.42-4ubuntu1_armhf.deb ...
311s Unpacking libpcre2-posix3:armhf (10.42-4ubuntu1) ...
311s Selecting previously unselected package libpcre2-dev:armhf.
311s Preparing to unpack .../44-libpcre2-dev_10.42-4ubuntu1_armhf.deb ...
311s Unpacking libpcre2-dev:armhf (10.42-4ubuntu1) ...
311s Selecting previously unselected package libpkgconf3:armhf.
311s Preparing to unpack .../45-libpkgconf3_1.8.1-2_armhf.deb ...
311s Unpacking libpkgconf3:armhf (1.8.1-2) ...
311s Selecting previously unselected package zlib1g-dev:armhf.
311s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ...
311s Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu1) ...
311s Selecting previously unselected package libpng-dev:armhf.
311s Preparing to unpack .../47-libpng-dev_1.6.43-3_armhf.deb ...
311s Unpacking libpng-dev:armhf (1.6.43-3) ...
312s Selecting previously unselected package libreadline-dev:armhf.
312s Preparing to unpack .../48-libreadline-dev_8.2-3.1build1_armhf.deb ...
312s Unpacking libreadline-dev:armhf (8.2-3.1build1) ...
312s Selecting previously unselected package pkgconf-bin.
312s Preparing to unpack .../49-pkgconf-bin_1.8.1-2_armhf.deb ...
312s Unpacking pkgconf-bin (1.8.1-2) ...
312s Selecting previously unselected package pkgconf:armhf.
312s Preparing to unpack .../50-pkgconf_1.8.1-2_armhf.deb ...
312s Unpacking pkgconf:armhf (1.8.1-2) ...
312s Selecting previously unselected package pkg-config:armhf.
312s Preparing to unpack .../51-pkg-config_1.8.1-2_armhf.deb ...
312s Unpacking pkg-config:armhf (1.8.1-2) ...
312s Selecting previously unselected package liblzma-dev:armhf.
312s Preparing to unpack .../52-liblzma-dev_5.6.0-0.2_armhf.deb ...
312s Unpacking liblzma-dev:armhf (5.6.0-0.2) ...
312s Selecting previously unselected package r-base-dev.
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312s Unpacking r-base-dev (4.3.3-2build1) ...
312s Selecting previously unselected package pkg-r-autopkgtest.
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312s Unpacking autopkgtest-satdep (0) ...
312s Setting up linux-libc-dev:armhf (6.8.0-20.20) ...
312s Setting up libpcre2-16-0:armhf (10.42-4ubuntu1) ...
312s Setting up libpcre2-32-0:armhf (10.42-4ubuntu1) ...
312s Setting up libpkgconf3:armhf (1.8.1-2) ...
312s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
312s Setting up libmpc3:armhf (1.3.1-1) ...
312s Setting up libatomic1:armhf (14-20240315-1ubuntu1) ...
312s Setting up icu-devtools (74.2-1ubuntu1) ...
312s Setting up pkgconf-bin (1.8.1-2) ...
312s Setting up liblzma-dev:armhf (5.6.0-0.2) ...
312s Setting up libubsan1:armhf (14-20240315-1ubuntu1) ...
312s Setting up libpcre2-posix3:armhf (10.42-4ubuntu1) ...
312s Setting up libcrypt-dev:armhf (1:4.4.36-4) ...
312s Setting up libasan8:armhf (14-20240315-1ubuntu1) ...
312s Setting up libisl23:armhf (0.26-3) ...
312s Setting up libc-dev-bin (2.39-0ubuntu6) ...
312s Setting up libcc1-0:armhf (14-20240315-1ubuntu1) ...
312s Setting up libblas-dev:armhf (3.12.0-3) ...
312s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
312s Setting up dctrl-tools (2.24-3build2) ...
312s Setting up cpp-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
312s Setting up pkgconf:armhf (1.8.1-2) ...
312s Setting up liblapack-dev:armhf (3.12.0-3) ...
312s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
312s Setting up pkg-config:armhf (1.8.1-2) ...
312s Setting up libgcc-13-dev:armhf (13.2.0-19ubuntu1) ...
312s Setting up libc6-dev:armhf (2.39-0ubuntu6) ...
312s Setting up libgfortran-13-dev:armhf (13.2.0-19ubuntu1) ...
312s Setting up libicu-dev:armhf (74.2-1ubuntu1) ...
312s Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
312s Setting up libstdc++-13-dev:armhf (13.2.0-19ubuntu1) ...
312s Setting up libbz2-dev:armhf (1.0.8-5ubuntu1) ...
312s Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ...
312s Setting up libncurses-dev:armhf (6.4+20240113-1ubuntu1) ...
312s Setting up libpcre2-dev:armhf (10.42-4ubuntu1) ...
312s Setting up cpp-13 (13.2.0-19ubuntu1) ...
312s Setting up libreadline-dev:armhf (8.2-3.1build1) ...
312s Setting up gcc-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
312s Setting up gcc-13 (13.2.0-19ubuntu1) ...
312s Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu1) ...
312s Setting up cpp (4:13.2.0-7ubuntu1) ...
312s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ...
312s Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
312s Setting up g++-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
312s Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-19ubuntu1) ...
312s Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
312s Setting up g++-13 (13.2.0-19ubuntu1) ...
312s Setting up libpng-dev:armhf (1.6.43-3) ...
312s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ...
312s Setting up gcc (4:13.2.0-7ubuntu1) ...
312s Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
312s Setting up gfortran-13 (13.2.0-19ubuntu1) ...
312s Setting up g++ (4:13.2.0-7ubuntu1) ...
312s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
312s Setting up build-essential (12.10ubuntu1) ...
312s Setting up gfortran (4:13.2.0-7ubuntu1) ...
312s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
312s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
312s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
312s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
312s Setting up r-base-dev (4.3.3-2build1) ...
312s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
312s Setting up autopkgtest-satdep (0) ...
312s Processing triggers for man-db (2.12.0-3build4) ...
313s Processing triggers for install-info (7.1-3build1) ...
313s Processing triggers for libc-bin (2.39-0ubuntu6) ...
325s (Reading database ... 63959 files and directories currently installed.)
325s Removing autopkgtest-satdep (0) ...
331s autopkgtest [01:15:48]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
331s autopkgtest [01:15:48]: test pkg-r-autopkgtest: [-----------------------
332s Test: Try to load the R library git2r
332s 
332s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
332s Copyright (C) 2024 The R Foundation for Statistical Computing
332s Platform: arm-unknown-linux-gnueabihf (32-bit)
332s 
332s R is free software and comes with ABSOLUTELY NO WARRANTY.
332s You are welcome to redistribute it under certain conditions.
332s Type 'license()' or 'licence()' for distribution details.
332s 
332s R is a collaborative project with many contributors.
332s Type 'contributors()' for more information and
332s 'citation()' on how to cite R or R packages in publications.
332s 
332s Type 'demo()' for some demos, 'help()' for on-line help, or
332s 'help.start()' for an HTML browser interface to help.
332s Type 'q()' to quit R.
332s 
332s > library('git2r')
332s > 
332s > 
332s Other tests are currently unsupported!
332s They will be progressively added.
332s autopkgtest [01:15:50]: test pkg-r-autopkgtest: -----------------------]
336s pkg-r-autopkgtest    PASS
336s autopkgtest [01:15:54]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
340s autopkgtest [01:15:58]: @@@@@@@@@@@@@@@@@@@@ summary
340s run-unit-test        PASS
340s pkg-r-autopkgtest    PASS