0s autopkgtest [17:16:43]: starting date and time: 2024-04-08 17:16:43+0000 0s autopkgtest [17:16:43]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [17:16:43]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9l_6oevt/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:curl --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu10 -- lxd -r lxd-armhf-10.145.243.58 lxd-armhf-10.145.243.58:autopkgtest/ubuntu/noble/armhf 33s autopkgtest [17:17:16]: testbed dpkg architecture: armhf 34s autopkgtest [17:17:17]: testbed apt version: 2.7.14build2 34s autopkgtest [17:17:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 41s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 42s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B] 42s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [834 kB] 42s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [11.3 kB] 42s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [217 kB] 42s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [116 kB] 42s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B] 42s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1192 B] 42s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B] 42s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [734 kB] 42s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B] 42s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [5000 B] 42s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B] 44s Fetched 2051 kB in 1s (1495 kB/s) 45s Reading package lists... 60s tee: /proc/self/fd/2: Permission denied 83s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 83s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 83s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 83s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 84s Reading package lists... 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Calculating upgrade... 85s The following packages will be upgraded: 85s curl libcurl3t64-gnutls libcurl4t64 libpython3.12-minimal 85s libpython3.12-stdlib libsasl2-2 libsasl2-modules libsasl2-modules-db 85s python3-gi python3.12 python3.12-minimal 85s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 6546 kB of archives. 85s After this operation, 58.4 kB disk space will be freed. 85s Get:1 http://ftpmaster.internal/ubuntu noble/main armhf python3.12 armhf 3.12.2-5ubuntu3 [644 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12-stdlib armhf 3.12.2-5ubuntu3 [1925 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf python3.12-minimal armhf 3.12.2-5ubuntu3 [2004 kB] 86s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12-minimal armhf 3.12.2-5ubuntu3 [817 kB] 86s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf python3-gi armhf 3.48.2-1 [219 kB] 86s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu10 [219 kB] 86s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu10 [296 kB] 86s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu10 [290 kB] 86s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu3 [19.2 kB] 86s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu3 [49.7 kB] 86s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu3 [61.4 kB] 86s Fetched 6546 kB in 1s (8727 kB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58471 files and directories currently installed.) 87s Preparing to unpack .../00-python3.12_3.12.2-5ubuntu3_armhf.deb ... 87s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 87s Preparing to unpack .../01-libpython3.12-stdlib_3.12.2-5ubuntu3_armhf.deb ... 87s Unpacking libpython3.12-stdlib:armhf (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 87s Preparing to unpack .../02-python3.12-minimal_3.12.2-5ubuntu3_armhf.deb ... 87s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 87s Preparing to unpack .../03-libpython3.12-minimal_3.12.2-5ubuntu3_armhf.deb ... 87s Unpacking libpython3.12-minimal:armhf (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 88s Preparing to unpack .../04-python3-gi_3.48.2-1_armhf.deb ... 88s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 88s Preparing to unpack .../05-curl_8.5.0-2ubuntu10_armhf.deb ... 88s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 88s Preparing to unpack .../06-libcurl4t64_8.5.0-2ubuntu10_armhf.deb ... 88s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 88s Preparing to unpack .../07-libcurl3t64-gnutls_8.5.0-2ubuntu10_armhf.deb ... 88s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 88s Preparing to unpack .../08-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_armhf.deb ... 88s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 88s Preparing to unpack .../09-libsasl2-2_2.1.28+dfsg1-5ubuntu3_armhf.deb ... 88s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 88s Preparing to unpack .../10-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_armhf.deb ... 88s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 88s Setting up libcurl4t64:armhf (8.5.0-2ubuntu10) ... 88s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu3) ... 88s Setting up libpython3.12-minimal:armhf (3.12.2-5ubuntu3) ... 88s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10) ... 88s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu3) ... 88s Setting up python3-gi (3.48.2-1) ... 89s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu3) ... 89s Setting up curl (8.5.0-2ubuntu10) ... 89s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 90s Setting up libpython3.12-stdlib:armhf (3.12.2-5ubuntu3) ... 90s Setting up python3.12 (3.12.2-5ubuntu3) ... 91s Processing triggers for systemd (255.4-1ubuntu7) ... 91s Processing triggers for man-db (2.12.0-4build1) ... 91s Processing triggers for libc-bin (2.39-0ubuntu8) ... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s autopkgtest [17:18:17]: rebooting testbed after setup commands that affected boot 132s autopkgtest [17:18:55]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024 156s autopkgtest [17:19:19]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 187s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (dsc) [3286 B] 187s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (tar) [153 MB] 187s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (diff) [17.1 kB] 187s gpgv: Signature made Sat Mar 16 06:29:40 2024 UTC 187s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 187s gpgv: issuer "steve.langasek@ubuntu.com" 187s gpgv: Can't check signature: No public key 187s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1build2.dsc: no acceptable signature found 191s autopkgtest [17:19:54]: testing package lammps version 20240207+dfsg-1.1build2 193s autopkgtest [17:19:56]: build not needed 208s autopkgtest [17:20:11]: test crack: preparing testbed 218s Reading package lists... 219s Building dependency tree... 219s Reading state information... 219s Starting pkgProblemResolver with broken count: 1 219s Starting 2 pkgProblemResolver with broken count: 1 219s Investigating (0) libevent-core-2.1-7t64:armhf < 2.1.12-stable-9ubuntu2 @ii mK Ib > 219s Broken libevent-core-2.1-7t64:armhf Breaks on libevent-core-2.1-7:armhf < none -> 2.1.12-stable-9 @un puN > (< 2.1.12-stable-9ubuntu2) 219s Considering libevent-core-2.1-7:armhf 6 as a solution to libevent-core-2.1-7t64:armhf 2 219s Removing libevent-core-2.1-7t64:armhf rather than change libevent-core-2.1-7:armhf 219s Investigating (0) tmux:armhf < 3.4-1build1 @ii mK Ib > 219s Broken tmux:armhf Depends on libevent-core-2.1-7t64:armhf < 2.1.12-stable-9ubuntu2 @ii mR > (>= 2.1.8-stable) 219s Considering libevent-core-2.1-7t64:armhf 2 as a solution to tmux:armhf 1 219s Removing tmux:armhf rather than change libevent-core-2.1-7t64:armhf 219s Investigating (0) byobu:armhf < 6.11-0ubuntu1 @ii mK Ib > 219s Broken byobu:armhf Depends on tmux:armhf < 3.4-1build1 @ii mR > (>= 1.5) 219s Considering tmux:armhf 1 as a solution to byobu:armhf 0 219s Removing byobu:armhf rather than change tmux:armhf 219s Done 220s The following packages were automatically installed and are no longer required: 220s pastebinit python3-newt run-one 220s Use 'apt autoremove' to remove them. 220s The following additional packages will be installed: 220s cpp-12 fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-12 220s gcc-12-base gfortran-12 lammps lammps-data libaec0 libasan8 libatomic1 220s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 220s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 220s libevent-core-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 220s libfontconfig1 libfreetype6 libgcc-12-dev libgfortran-12-dev libgfortran5 220s libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 220s libglx-mesa0 libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 220s libhwloc-plugins libhwloc15 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 220s libjsoncpp25 libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 220s libmpc3 libmunge2 libnetcdf19t64 libogg0 libopengl0 libopenmpi3t64 220s libpciaccess0 libpixman-1-0 libpmix2t64 libproj25 libpython3.12t64 220s librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 220s libtcl8.6 libtheora0 libtiff6 libtk8.6 libubsan1 libvoro++1 libvtk9.1t64 220s libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 220s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 220s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 220s libxss1 libxxf86vm1 linux-libc-dev mpi-default-bin ocl-icd-libopencl1 220s openmpi-bin openmpi-common proj-data rpcsvc-proto x11-common 220s Suggested packages: 220s gcc-12-locales cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev 220s openkim-models glibc-doc manpages-dev libfftw3-bin libfftw3-dev glew-utils 220s proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 220s | fortran-compiler 220s Recommended packages: 220s lammps-doc manpages manpages-dev libc-devtools libgl1-amber-dri 220s mesa-vulkan-drivers | vulkan-icd 220s The following packages will be REMOVED: 220s byobu libevent-core-2.1-7t64 tmux 220s The following NEW packages will be installed: 220s autopkgtest-satdep cpp-12 fontconfig-config fonts-dejavu-core 220s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 220s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 220s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 220s libdrm-nouveau2 libdrm-radeon1 libevent-core-2.1-7 libevent-pthreads-2.1-7 220s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 220s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 220s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 220s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins libhwloc15 libisl23 220s libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp25 libkim-api2 liblammps0t64 220s liblapack3 liblerc4 libllvm17t64 libmpc3 libmunge2 libnetcdf19t64 libogg0 220s libopengl0 libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix2t64 libproj25 220s libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 220s libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 libubsan1 libvoro++1 220s libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 220s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 220s libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 220s libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev mpi-default-bin 220s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data rpcsvc-proto 220s x11-common 220s 0 upgraded, 107 newly installed, 3 to remove and 0 not upgraded. 220s Need to get 136 MB/136 MB of archives. 220s After this operation, 465 MB of additional disk space will be used. 220s Get:1 /tmp/autopkgtest.hjYZk9/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [700 B] 220s Get:2 http://ftpmaster.internal/ubuntu noble/universe armhf gcc-12-base armhf 12.3.0-17ubuntu1 [46.3 kB] 220s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libisl23 armhf 0.26-3 [595 kB] 220s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libmpc3 armhf 1.3.1-1 [46.4 kB] 220s Get:5 http://ftpmaster.internal/ubuntu noble/universe armhf cpp-12 armhf 12.3.0-17ubuntu1 [8159 kB] 221s Get:6 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 221s Get:7 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 221s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 221s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libcc1-0 armhf 14-20240330-1ubuntu2 [39.1 kB] 221s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libgomp1 armhf 14-20240330-1ubuntu2 [125 kB] 221s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libatomic1 armhf 14-20240330-1ubuntu2 [7846 B] 221s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libasan8 armhf 14-20240330-1ubuntu2 [2940 kB] 221s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libubsan1 armhf 14-20240330-1ubuntu2 [1153 kB] 221s Get:14 http://ftpmaster.internal/ubuntu noble/universe armhf libgcc-12-dev armhf 12.3.0-17ubuntu1 [855 kB] 221s Get:15 http://ftpmaster.internal/ubuntu noble/universe armhf gcc-12 armhf 12.3.0-17ubuntu1 [16.2 MB] 221s Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libgfortran5 armhf 14-20240330-1ubuntu2 [312 kB] 221s Get:17 http://ftpmaster.internal/ubuntu noble/universe armhf libgfortran-12-dev armhf 12.3.0-17ubuntu1 [350 kB] 221s Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] 221s Get:19 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.8.0-22.22 [1555 kB] 221s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] 221s Get:21 http://ftpmaster.internal/ubuntu noble/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu6 [63.7 kB] 221s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] 221s Get:23 http://ftpmaster.internal/ubuntu noble/universe armhf gfortran-12 armhf 12.3.0-17ubuntu1 [8571 kB] 222s Get:24 http://ftpmaster.internal/ubuntu noble/universe armhf lammps-data all 20240207+dfsg-1.1build2 [9706 kB] 222s Get:25 http://ftpmaster.internal/ubuntu noble/universe armhf libaec0 armhf 1.1.2-1 [20.7 kB] 222s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB] 222s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB] 222s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 222s Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB] 222s Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] 222s Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] 222s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] 222s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libcairo2 armhf 1.18.0-3 [482 kB] 222s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB] 222s Get:35 http://ftpmaster.internal/ubuntu noble/universe armhf libdouble-conversion3 armhf 3.3.0-1 [38.3 kB] 222s Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [18.6 kB] 222s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-nouveau2 armhf 2.4.120-2 [15.2 kB] 222s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-radeon1 armhf 2.4.120-2 [18.2 kB] 222s Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9 [80.8 kB] 222s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-9 [7340 B] 222s Get:41 http://ftpmaster.internal/ubuntu noble/main armhf librdmacm1t64 armhf 50.0-2build2 [63.0 kB] 222s Get:42 http://ftpmaster.internal/ubuntu noble/universe armhf libfabric1 armhf 1.17.0-3build2 [419 kB] 222s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libfftw3-double3 armhf 3.3.10-1ubuntu3 [369 kB] 222s Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libvulkan1 armhf 1.3.275.0-1 [122 kB] 222s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libglapi-mesa armhf 24.0.3-1ubuntu4 [47.8 kB] 222s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libllvm17t64 armhf 1:17.0.6-9build3 [25.3 MB] 223s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-dri3-0 armhf 1.15-1 [6778 B] 223s Get:48 http://ftpmaster.internal/ubuntu noble/main armhf libgl1-mesa-dri armhf 24.0.3-1ubuntu4 [7201 kB] 223s Get:49 http://ftpmaster.internal/ubuntu noble/main armhf libglvnd0 armhf 1.7.0-1 [83.7 kB] 223s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libx11-xcb1 armhf 2:1.8.7-1 [7744 B] 223s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-dri2-0 armhf 1.15-1 [6872 B] 223s Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-glx0 armhf 1.15-1 [22.6 kB] 223s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-present0 armhf 1.15-1 [5526 B] 223s Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-randr0 armhf 1.15-1 [16.8 kB] 223s Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-sync1 armhf 1.15-1 [8794 B] 223s Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-xfixes0 armhf 1.15-1 [10.0 kB] 223s Get:57 http://ftpmaster.internal/ubuntu noble/main armhf libxfixes3 armhf 1:6.0.0-2 [8966 B] 223s Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libxshmfence1 armhf 1.3-1build4 [5080 B] 223s Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libxxf86vm1 armhf 1:1.1.4-1build3 [9068 B] 223s Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libglx-mesa0 armhf 24.0.3-1ubuntu4 [132 kB] 223s Get:61 http://ftpmaster.internal/ubuntu noble/main armhf libglx0 armhf 1.7.0-1 [37.0 kB] 223s Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libgl1 armhf 1.7.0-1 [104 kB] 223s Get:63 http://ftpmaster.internal/ubuntu noble/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2 [38.9 kB] 223s Get:64 http://ftpmaster.internal/ubuntu noble/universe armhf libglew2.2 armhf 2.2.0-4 [214 kB] 223s Get:65 http://ftpmaster.internal/ubuntu noble/universe armhf libsz2 armhf 1.1.2-1 [5262 B] 223s Get:66 http://ftpmaster.internal/ubuntu noble/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu4 [1337 kB] 223s Get:67 http://ftpmaster.internal/ubuntu noble/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu4 [54.8 kB] 223s Get:68 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc15 armhf 2.10.0-1 [145 kB] 223s Get:69 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] 223s Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 223s Get:71 http://ftpmaster.internal/ubuntu noble/main armhf libjsoncpp25 armhf 1.9.5-6 [72.5 kB] 223s Get:72 http://ftpmaster.internal/ubuntu noble/universe armhf libkim-api2 armhf 2.3.0-1 [536 kB] 223s Get:73 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB] 223s Get:74 http://ftpmaster.internal/ubuntu noble/universe armhf libnetcdf19t64 armhf 1:4.9.2-5ubuntu4 [422 kB] 223s Get:75 http://ftpmaster.internal/ubuntu noble/universe armhf libmunge2 armhf 0.5.15-4build1 [17.1 kB] 223s Get:76 http://ftpmaster.internal/ubuntu noble/main armhf libpciaccess0 armhf 0.17-3 [16.3 kB] 223s Get:77 http://ftpmaster.internal/ubuntu noble/main armhf libxnvctrl0 armhf 510.47.03-0ubuntu4 [11.6 kB] 223s Get:78 http://ftpmaster.internal/ubuntu noble/universe armhf ocl-icd-libopencl1 armhf 2.3.2-1 [34.4 kB] 223s Get:79 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc-plugins armhf 2.10.0-1 [13.7 kB] 223s Get:80 http://ftpmaster.internal/ubuntu noble/universe armhf libpmix2t64 armhf 5.0.1-4.1 [616 kB] 223s Get:81 http://ftpmaster.internal/ubuntu noble/universe armhf libopenmpi3t64 armhf 4.1.6-7ubuntu1 [2041 kB] 223s Get:82 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12t64 armhf 3.12.2-5ubuntu3 [2078 kB] 223s Get:83 http://ftpmaster.internal/ubuntu noble/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 223s Get:84 http://ftpmaster.internal/ubuntu noble/main armhf libogg0 armhf 1.3.5-3 [20.1 kB] 223s Get:85 http://ftpmaster.internal/ubuntu noble/main armhf libopengl0 armhf 1.7.0-1 [36.2 kB] 223s Get:86 http://ftpmaster.internal/ubuntu noble/universe armhf proj-data all 9.4.0-1build2 [7885 kB] 224s Get:87 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB] 224s Get:88 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB] 224s Get:89 http://ftpmaster.internal/ubuntu noble/main armhf libsharpyuv0 armhf 1.3.2-0.4build3 [13.6 kB] 224s Get:90 http://ftpmaster.internal/ubuntu noble/main armhf libwebp7 armhf 1.3.2-0.4build3 [183 kB] 224s Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu2 [178 kB] 224s Get:92 http://ftpmaster.internal/ubuntu noble/universe armhf libproj25 armhf 9.4.0-1build2 [1281 kB] 224s Get:93 http://ftpmaster.internal/ubuntu noble/universe armhf libtbbmalloc2 armhf 2021.11.0-2ubuntu2 [52.3 kB] 224s Get:94 http://ftpmaster.internal/ubuntu noble/universe armhf libtbbbind-2-5 armhf 2021.11.0-2ubuntu2 [14.6 kB] 224s Get:95 http://ftpmaster.internal/ubuntu noble/universe armhf libtbb12 armhf 2021.11.0-2ubuntu2 [88.0 kB] 224s Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB] 224s Get:97 http://ftpmaster.internal/ubuntu noble/main armhf libtheora0 armhf 1.1.1+dfsg.1-16.1build3 [142 kB] 224s Get:98 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB] 224s Get:99 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] 224s Get:100 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] 224s Get:101 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB] 224s Get:102 http://ftpmaster.internal/ubuntu noble/universe armhf libvtk9.1t64 armhf 9.1.0+really9.1.0+dfsg2-7.1build2 [17.7 MB] 224s Get:103 http://ftpmaster.internal/ubuntu noble/universe armhf liblammps0t64 armhf 20240207+dfsg-1.1build2 [6789 kB] 225s Get:104 http://ftpmaster.internal/ubuntu noble/universe armhf openmpi-common all 4.1.6-7ubuntu1 [170 kB] 225s Get:105 http://ftpmaster.internal/ubuntu noble/universe armhf openmpi-bin armhf 4.1.6-7ubuntu1 [83.2 kB] 225s Get:106 http://ftpmaster.internal/ubuntu noble/universe armhf mpi-default-bin armhf 1.15 [2336 B] 225s Get:107 http://ftpmaster.internal/ubuntu noble/universe armhf lammps armhf 20240207+dfsg-1.1build2 [14.8 kB] 225s Fetched 136 MB in 5s (26.4 MB/s) 225s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58472 files and directories currently installed.) 225s Removing byobu (6.11-0ubuntu1) ... 225s Removing tmux (3.4-1build1) ... 225s Removing libevent-core-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 225s Selecting previously unselected package gcc-12-base:armhf. 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58265 files and directories currently installed.) 226s Preparing to unpack .../000-gcc-12-base_12.3.0-17ubuntu1_armhf.deb ... 226s Unpacking gcc-12-base:armhf (12.3.0-17ubuntu1) ... 226s Selecting previously unselected package libisl23:armhf. 226s Preparing to unpack .../001-libisl23_0.26-3_armhf.deb ... 226s Unpacking libisl23:armhf (0.26-3) ... 226s Selecting previously unselected package libmpc3:armhf. 226s Preparing to unpack .../002-libmpc3_1.3.1-1_armhf.deb ... 226s Unpacking libmpc3:armhf (1.3.1-1) ... 226s Selecting previously unselected package cpp-12. 226s Preparing to unpack .../003-cpp-12_12.3.0-17ubuntu1_armhf.deb ... 226s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 226s Selecting previously unselected package fonts-dejavu-mono. 226s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ... 226s Unpacking fonts-dejavu-mono (2.37-8) ... 226s Selecting previously unselected package fonts-dejavu-core. 226s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ... 226s Unpacking fonts-dejavu-core (2.37-8) ... 226s Selecting previously unselected package fontconfig-config. 226s Preparing to unpack .../006-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 226s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 226s Selecting previously unselected package libcc1-0:armhf. 226s Preparing to unpack .../007-libcc1-0_14-20240330-1ubuntu2_armhf.deb ... 226s Unpacking libcc1-0:armhf (14-20240330-1ubuntu2) ... 226s Selecting previously unselected package libgomp1:armhf. 226s Preparing to unpack .../008-libgomp1_14-20240330-1ubuntu2_armhf.deb ... 226s Unpacking libgomp1:armhf (14-20240330-1ubuntu2) ... 226s Selecting previously unselected package libatomic1:armhf. 226s Preparing to unpack .../009-libatomic1_14-20240330-1ubuntu2_armhf.deb ... 226s Unpacking libatomic1:armhf (14-20240330-1ubuntu2) ... 226s Selecting previously unselected package libasan8:armhf. 226s Preparing to unpack .../010-libasan8_14-20240330-1ubuntu2_armhf.deb ... 226s Unpacking libasan8:armhf (14-20240330-1ubuntu2) ... 226s Selecting previously unselected package libubsan1:armhf. 226s Preparing to unpack .../011-libubsan1_14-20240330-1ubuntu2_armhf.deb ... 226s Unpacking libubsan1:armhf (14-20240330-1ubuntu2) ... 226s Selecting previously unselected package libgcc-12-dev:armhf. 226s Preparing to unpack .../012-libgcc-12-dev_12.3.0-17ubuntu1_armhf.deb ... 226s Unpacking libgcc-12-dev:armhf (12.3.0-17ubuntu1) ... 226s Selecting previously unselected package gcc-12. 226s Preparing to unpack .../013-gcc-12_12.3.0-17ubuntu1_armhf.deb ... 226s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 227s Selecting previously unselected package libgfortran5:armhf. 227s Preparing to unpack .../014-libgfortran5_14-20240330-1ubuntu2_armhf.deb ... 227s Unpacking libgfortran5:armhf (14-20240330-1ubuntu2) ... 227s Selecting previously unselected package libgfortran-12-dev:armhf. 227s Preparing to unpack .../015-libgfortran-12-dev_12.3.0-17ubuntu1_armhf.deb ... 227s Unpacking libgfortran-12-dev:armhf (12.3.0-17ubuntu1) ... 227s Selecting previously unselected package libc-dev-bin. 227s Preparing to unpack .../016-libc-dev-bin_2.39-0ubuntu8_armhf.deb ... 227s Unpacking libc-dev-bin (2.39-0ubuntu8) ... 227s Selecting previously unselected package linux-libc-dev:armhf. 227s Preparing to unpack .../017-linux-libc-dev_6.8.0-22.22_armhf.deb ... 227s Unpacking linux-libc-dev:armhf (6.8.0-22.22) ... 227s Selecting previously unselected package libcrypt-dev:armhf. 227s Preparing to unpack .../018-libcrypt-dev_1%3a4.4.36-4_armhf.deb ... 227s Unpacking libcrypt-dev:armhf (1:4.4.36-4) ... 227s Selecting previously unselected package rpcsvc-proto. 227s Preparing to unpack .../019-rpcsvc-proto_1.4.2-0ubuntu6_armhf.deb ... 227s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 227s Selecting previously unselected package libc6-dev:armhf. 227s Preparing to unpack .../020-libc6-dev_2.39-0ubuntu8_armhf.deb ... 227s Unpacking libc6-dev:armhf (2.39-0ubuntu8) ... 227s Selecting previously unselected package gfortran-12. 227s Preparing to unpack .../021-gfortran-12_12.3.0-17ubuntu1_armhf.deb ... 227s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 227s Selecting previously unselected package lammps-data. 227s Preparing to unpack .../022-lammps-data_20240207+dfsg-1.1build2_all.deb ... 227s Unpacking lammps-data (20240207+dfsg-1.1build2) ... 228s Selecting previously unselected package libaec0:armhf. 228s Preparing to unpack .../023-libaec0_1.1.2-1_armhf.deb ... 228s Unpacking libaec0:armhf (1.1.2-1) ... 228s Selecting previously unselected package libblas3:armhf. 228s Preparing to unpack .../024-libblas3_3.12.0-3_armhf.deb ... 228s Unpacking libblas3:armhf (3.12.0-3) ... 228s Selecting previously unselected package libfreetype6:armhf. 228s Preparing to unpack .../025-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ... 228s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ... 228s Selecting previously unselected package libfontconfig1:armhf. 228s Preparing to unpack .../026-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 228s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 228s Selecting previously unselected package libpixman-1-0:armhf. 228s Preparing to unpack .../027-libpixman-1-0_0.42.2-1_armhf.deb ... 228s Unpacking libpixman-1-0:armhf (0.42.2-1) ... 228s Selecting previously unselected package libxcb-render0:armhf. 228s Preparing to unpack .../028-libxcb-render0_1.15-1_armhf.deb ... 228s Unpacking libxcb-render0:armhf (1.15-1) ... 228s Selecting previously unselected package libxcb-shm0:armhf. 228s Preparing to unpack .../029-libxcb-shm0_1.15-1_armhf.deb ... 228s Unpacking libxcb-shm0:armhf (1.15-1) ... 228s Selecting previously unselected package libxrender1:armhf. 228s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1_armhf.deb ... 228s Unpacking libxrender1:armhf (1:0.9.10-1.1) ... 228s Selecting previously unselected package libcairo2:armhf. 228s Preparing to unpack .../031-libcairo2_1.18.0-3_armhf.deb ... 228s Unpacking libcairo2:armhf (1.18.0-3) ... 228s Selecting previously unselected package libdeflate0:armhf. 228s Preparing to unpack .../032-libdeflate0_1.19-1_armhf.deb ... 228s Unpacking libdeflate0:armhf (1.19-1) ... 228s Selecting previously unselected package libdouble-conversion3:armhf. 228s Preparing to unpack .../033-libdouble-conversion3_3.3.0-1_armhf.deb ... 228s Unpacking libdouble-conversion3:armhf (3.3.0-1) ... 228s Selecting previously unselected package libdrm-amdgpu1:armhf. 228s Preparing to unpack .../034-libdrm-amdgpu1_2.4.120-2_armhf.deb ... 228s Unpacking libdrm-amdgpu1:armhf (2.4.120-2) ... 228s Selecting previously unselected package libdrm-nouveau2:armhf. 228s Preparing to unpack .../035-libdrm-nouveau2_2.4.120-2_armhf.deb ... 228s Unpacking libdrm-nouveau2:armhf (2.4.120-2) ... 228s Selecting previously unselected package libdrm-radeon1:armhf. 228s Preparing to unpack .../036-libdrm-radeon1_2.4.120-2_armhf.deb ... 228s Unpacking libdrm-radeon1:armhf (2.4.120-2) ... 228s Selecting previously unselected package libevent-core-2.1-7:armhf. 228s Preparing to unpack .../037-libevent-core-2.1-7_2.1.12-stable-9_armhf.deb ... 228s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9) ... 228s Selecting previously unselected package libevent-pthreads-2.1-7:armhf. 228s Preparing to unpack .../038-libevent-pthreads-2.1-7_2.1.12-stable-9_armhf.deb ... 228s Unpacking libevent-pthreads-2.1-7:armhf (2.1.12-stable-9) ... 228s Selecting previously unselected package librdmacm1t64:armhf. 228s Preparing to unpack .../039-librdmacm1t64_50.0-2build2_armhf.deb ... 228s Unpacking librdmacm1t64:armhf (50.0-2build2) ... 228s Selecting previously unselected package libfabric1:armhf. 228s Preparing to unpack .../040-libfabric1_1.17.0-3build2_armhf.deb ... 228s Unpacking libfabric1:armhf (1.17.0-3build2) ... 228s Selecting previously unselected package libfftw3-double3:armhf. 228s Preparing to unpack .../041-libfftw3-double3_3.3.10-1ubuntu3_armhf.deb ... 228s Unpacking libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 228s Selecting previously unselected package libvulkan1:armhf. 228s Preparing to unpack .../042-libvulkan1_1.3.275.0-1_armhf.deb ... 228s Unpacking libvulkan1:armhf (1.3.275.0-1) ... 228s Selecting previously unselected package libglapi-mesa:armhf. 228s Preparing to unpack .../043-libglapi-mesa_24.0.3-1ubuntu4_armhf.deb ... 228s Unpacking libglapi-mesa:armhf (24.0.3-1ubuntu4) ... 228s Selecting previously unselected package libllvm17t64:armhf. 228s Preparing to unpack .../044-libllvm17t64_1%3a17.0.6-9build3_armhf.deb ... 228s Unpacking libllvm17t64:armhf (1:17.0.6-9build3) ... 229s Selecting previously unselected package libxcb-dri3-0:armhf. 229s Preparing to unpack .../045-libxcb-dri3-0_1.15-1_armhf.deb ... 229s Unpacking libxcb-dri3-0:armhf (1.15-1) ... 229s Selecting previously unselected package libgl1-mesa-dri:armhf. 229s Preparing to unpack .../046-libgl1-mesa-dri_24.0.3-1ubuntu4_armhf.deb ... 229s Unpacking libgl1-mesa-dri:armhf (24.0.3-1ubuntu4) ... 229s Selecting previously unselected package libglvnd0:armhf. 229s Preparing to unpack .../047-libglvnd0_1.7.0-1_armhf.deb ... 229s Unpacking libglvnd0:armhf (1.7.0-1) ... 229s Selecting previously unselected package libx11-xcb1:armhf. 229s Preparing to unpack .../048-libx11-xcb1_2%3a1.8.7-1_armhf.deb ... 229s Unpacking libx11-xcb1:armhf (2:1.8.7-1) ... 229s Selecting previously unselected package libxcb-dri2-0:armhf. 229s Preparing to unpack .../049-libxcb-dri2-0_1.15-1_armhf.deb ... 229s Unpacking libxcb-dri2-0:armhf (1.15-1) ... 229s Selecting previously unselected package libxcb-glx0:armhf. 229s Preparing to unpack .../050-libxcb-glx0_1.15-1_armhf.deb ... 229s Unpacking libxcb-glx0:armhf (1.15-1) ... 229s Selecting previously unselected package libxcb-present0:armhf. 229s Preparing to unpack .../051-libxcb-present0_1.15-1_armhf.deb ... 229s Unpacking libxcb-present0:armhf (1.15-1) ... 229s Selecting previously unselected package libxcb-randr0:armhf. 229s Preparing to unpack .../052-libxcb-randr0_1.15-1_armhf.deb ... 229s Unpacking libxcb-randr0:armhf (1.15-1) ... 229s Selecting previously unselected package libxcb-sync1:armhf. 229s Preparing to unpack .../053-libxcb-sync1_1.15-1_armhf.deb ... 229s Unpacking libxcb-sync1:armhf (1.15-1) ... 229s Selecting previously unselected package libxcb-xfixes0:armhf. 229s Preparing to unpack .../054-libxcb-xfixes0_1.15-1_armhf.deb ... 229s Unpacking libxcb-xfixes0:armhf (1.15-1) ... 229s Selecting previously unselected package libxfixes3:armhf. 229s Preparing to unpack .../055-libxfixes3_1%3a6.0.0-2_armhf.deb ... 229s Unpacking libxfixes3:armhf (1:6.0.0-2) ... 229s Selecting previously unselected package libxshmfence1:armhf. 229s Preparing to unpack .../056-libxshmfence1_1.3-1build4_armhf.deb ... 229s Unpacking libxshmfence1:armhf (1.3-1build4) ... 229s Selecting previously unselected package libxxf86vm1:armhf. 229s Preparing to unpack .../057-libxxf86vm1_1%3a1.1.4-1build3_armhf.deb ... 229s Unpacking libxxf86vm1:armhf (1:1.1.4-1build3) ... 229s Selecting previously unselected package libglx-mesa0:armhf. 230s Preparing to unpack .../058-libglx-mesa0_24.0.3-1ubuntu4_armhf.deb ... 230s Unpacking libglx-mesa0:armhf (24.0.3-1ubuntu4) ... 230s Selecting previously unselected package libglx0:armhf. 230s Preparing to unpack .../059-libglx0_1.7.0-1_armhf.deb ... 230s Unpacking libglx0:armhf (1.7.0-1) ... 230s Selecting previously unselected package libgl1:armhf. 230s Preparing to unpack .../060-libgl1_1.7.0-1_armhf.deb ... 230s Unpacking libgl1:armhf (1.7.0-1) ... 230s Selecting previously unselected package libgl2ps1.4. 230s Preparing to unpack .../061-libgl2ps1.4_1.4.2+dfsg1-2_armhf.deb ... 230s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 230s Selecting previously unselected package libglew2.2:armhf. 230s Preparing to unpack .../062-libglew2.2_2.2.0-4_armhf.deb ... 230s Unpacking libglew2.2:armhf (2.2.0-4) ... 230s Selecting previously unselected package libsz2:armhf. 230s Preparing to unpack .../063-libsz2_1.1.2-1_armhf.deb ... 230s Unpacking libsz2:armhf (1.1.2-1) ... 230s Selecting previously unselected package libhdf5-103-1t64:armhf. 230s Preparing to unpack .../064-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 230s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ... 230s Selecting previously unselected package libhdf5-hl-100t64:armhf. 230s Preparing to unpack .../065-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 230s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ... 230s Selecting previously unselected package libhwloc15:armhf. 230s Preparing to unpack .../066-libhwloc15_2.10.0-1_armhf.deb ... 230s Unpacking libhwloc15:armhf (2.10.0-1) ... 230s Selecting previously unselected package libjpeg-turbo8:armhf. 230s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ... 230s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 230s Selecting previously unselected package libjpeg8:armhf. 230s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_armhf.deb ... 230s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 230s Selecting previously unselected package libjsoncpp25:armhf. 230s Preparing to unpack .../069-libjsoncpp25_1.9.5-6_armhf.deb ... 230s Unpacking libjsoncpp25:armhf (1.9.5-6) ... 230s Selecting previously unselected package libkim-api2:armhf. 230s Preparing to unpack .../070-libkim-api2_2.3.0-1_armhf.deb ... 230s Unpacking libkim-api2:armhf (2.3.0-1) ... 230s Selecting previously unselected package liblapack3:armhf. 230s Preparing to unpack .../071-liblapack3_3.12.0-3_armhf.deb ... 230s Unpacking liblapack3:armhf (3.12.0-3) ... 230s Selecting previously unselected package libnetcdf19t64:armhf. 230s Preparing to unpack .../072-libnetcdf19t64_1%3a4.9.2-5ubuntu4_armhf.deb ... 230s Unpacking libnetcdf19t64:armhf (1:4.9.2-5ubuntu4) ... 230s Selecting previously unselected package libmunge2:armhf. 230s Preparing to unpack .../073-libmunge2_0.5.15-4build1_armhf.deb ... 230s Unpacking libmunge2:armhf (0.5.15-4build1) ... 230s Selecting previously unselected package libpciaccess0:armhf. 230s Preparing to unpack .../074-libpciaccess0_0.17-3_armhf.deb ... 230s Unpacking libpciaccess0:armhf (0.17-3) ... 230s Selecting previously unselected package libxnvctrl0:armhf. 230s Preparing to unpack .../075-libxnvctrl0_510.47.03-0ubuntu4_armhf.deb ... 230s Unpacking libxnvctrl0:armhf (510.47.03-0ubuntu4) ... 230s Selecting previously unselected package ocl-icd-libopencl1:armhf. 230s Preparing to unpack .../076-ocl-icd-libopencl1_2.3.2-1_armhf.deb ... 230s Unpacking ocl-icd-libopencl1:armhf (2.3.2-1) ... 230s Selecting previously unselected package libhwloc-plugins:armhf. 230s Preparing to unpack .../077-libhwloc-plugins_2.10.0-1_armhf.deb ... 230s Unpacking libhwloc-plugins:armhf (2.10.0-1) ... 230s Selecting previously unselected package libpmix2t64:armhf. 230s Preparing to unpack .../078-libpmix2t64_5.0.1-4.1_armhf.deb ... 230s Unpacking libpmix2t64:armhf (5.0.1-4.1) ... 230s Selecting previously unselected package libopenmpi3t64:armhf. 230s Preparing to unpack .../079-libopenmpi3t64_4.1.6-7ubuntu1_armhf.deb ... 230s Unpacking libopenmpi3t64:armhf (4.1.6-7ubuntu1) ... 230s Selecting previously unselected package libpython3.12t64:armhf. 230s Preparing to unpack .../080-libpython3.12t64_3.12.2-5ubuntu3_armhf.deb ... 230s Unpacking libpython3.12t64:armhf (3.12.2-5ubuntu3) ... 230s Selecting previously unselected package libvoro++1. 230s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 230s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 230s Selecting previously unselected package libogg0:armhf. 230s Preparing to unpack .../082-libogg0_1.3.5-3_armhf.deb ... 230s Unpacking libogg0:armhf (1.3.5-3) ... 230s Selecting previously unselected package libopengl0:armhf. 230s Preparing to unpack .../083-libopengl0_1.7.0-1_armhf.deb ... 230s Unpacking libopengl0:armhf (1.7.0-1) ... 230s Selecting previously unselected package proj-data. 230s Preparing to unpack .../084-proj-data_9.4.0-1build2_all.deb ... 230s Unpacking proj-data (9.4.0-1build2) ... 231s Selecting previously unselected package libjbig0:armhf. 231s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu1_armhf.deb ... 231s Unpacking libjbig0:armhf (2.1-6.1ubuntu1) ... 231s Selecting previously unselected package liblerc4:armhf. 231s Preparing to unpack .../086-liblerc4_4.0.0+ds-4ubuntu1_armhf.deb ... 231s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu1) ... 231s Selecting previously unselected package libsharpyuv0:armhf. 231s Preparing to unpack .../087-libsharpyuv0_1.3.2-0.4build3_armhf.deb ... 231s Unpacking libsharpyuv0:armhf (1.3.2-0.4build3) ... 231s Selecting previously unselected package libwebp7:armhf. 231s Preparing to unpack .../088-libwebp7_1.3.2-0.4build3_armhf.deb ... 231s Unpacking libwebp7:armhf (1.3.2-0.4build3) ... 231s Selecting previously unselected package libtiff6:armhf. 231s Preparing to unpack .../089-libtiff6_4.5.1+git230720-4ubuntu2_armhf.deb ... 231s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... 231s Selecting previously unselected package libproj25:armhf. 231s Preparing to unpack .../090-libproj25_9.4.0-1build2_armhf.deb ... 231s Unpacking libproj25:armhf (9.4.0-1build2) ... 231s Selecting previously unselected package libtbbmalloc2:armhf. 231s Preparing to unpack .../091-libtbbmalloc2_2021.11.0-2ubuntu2_armhf.deb ... 231s Unpacking libtbbmalloc2:armhf (2021.11.0-2ubuntu2) ... 231s Selecting previously unselected package libtbbbind-2-5:armhf. 231s Preparing to unpack .../092-libtbbbind-2-5_2021.11.0-2ubuntu2_armhf.deb ... 231s Unpacking libtbbbind-2-5:armhf (2021.11.0-2ubuntu2) ... 231s Selecting previously unselected package libtbb12:armhf. 231s Preparing to unpack .../093-libtbb12_2021.11.0-2ubuntu2_armhf.deb ... 231s Unpacking libtbb12:armhf (2021.11.0-2ubuntu2) ... 231s Selecting previously unselected package libtcl8.6:armhf. 231s Preparing to unpack .../094-libtcl8.6_8.6.14+dfsg-1build1_armhf.deb ... 231s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 231s Selecting previously unselected package libtheora0:armhf. 231s Preparing to unpack .../095-libtheora0_1.1.1+dfsg.1-16.1build3_armhf.deb ... 231s Unpacking libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 231s Selecting previously unselected package libxft2:armhf. 231s Preparing to unpack .../096-libxft2_2.3.6-1_armhf.deb ... 231s Unpacking libxft2:armhf (2.3.6-1) ... 231s Selecting previously unselected package x11-common. 231s Preparing to unpack .../097-x11-common_1%3a7.7+23ubuntu2_all.deb ... 231s Unpacking x11-common (1:7.7+23ubuntu2) ... 231s Selecting previously unselected package libxss1:armhf. 231s Preparing to unpack .../098-libxss1_1%3a1.2.3-1build2_armhf.deb ... 231s Unpacking libxss1:armhf (1:1.2.3-1build2) ... 231s Selecting previously unselected package libtk8.6:armhf. 231s Preparing to unpack .../099-libtk8.6_8.6.14-1build1_armhf.deb ... 231s Unpacking libtk8.6:armhf (8.6.14-1build1) ... 231s Selecting previously unselected package libvtk9.1t64:armhf. 231s Preparing to unpack .../100-libvtk9.1t64_9.1.0+really9.1.0+dfsg2-7.1build2_armhf.deb ... 231s Unpacking libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-7.1build2) ... 232s Selecting previously unselected package liblammps0t64:armhf. 232s Preparing to unpack .../101-liblammps0t64_20240207+dfsg-1.1build2_armhf.deb ... 232s Unpacking liblammps0t64:armhf (20240207+dfsg-1.1build2) ... 232s Selecting previously unselected package openmpi-common. 232s Preparing to unpack .../102-openmpi-common_4.1.6-7ubuntu1_all.deb ... 232s Unpacking openmpi-common (4.1.6-7ubuntu1) ... 232s Selecting previously unselected package openmpi-bin. 232s Preparing to unpack .../103-openmpi-bin_4.1.6-7ubuntu1_armhf.deb ... 232s Unpacking openmpi-bin (4.1.6-7ubuntu1) ... 232s Selecting previously unselected package mpi-default-bin. 232s Preparing to unpack .../104-mpi-default-bin_1.15_armhf.deb ... 232s Unpacking mpi-default-bin (1.15) ... 232s Selecting previously unselected package lammps. 232s Preparing to unpack .../105-lammps_20240207+dfsg-1.1build2_armhf.deb ... 232s Unpacking lammps (20240207+dfsg-1.1build2) ... 232s Selecting previously unselected package autopkgtest-satdep. 232s Preparing to unpack .../106-1-autopkgtest-satdep.deb ... 232s Unpacking autopkgtest-satdep (0) ... 232s Setting up libxcb-dri3-0:armhf (1.15-1) ... 232s Setting up libtbbmalloc2:armhf (2021.11.0-2ubuntu2) ... 232s Setting up libpixman-1-0:armhf (0.42.2-1) ... 232s Setting up libsharpyuv0:armhf (1.3.2-0.4build3) ... 232s Setting up libx11-xcb1:armhf (2:1.8.7-1) ... 232s Setting up libpciaccess0:armhf (0.17-3) ... 232s Setting up libdouble-conversion3:armhf (3.3.0-1) ... 232s Setting up libdrm-nouveau2:armhf (2.4.120-2) ... 232s Setting up libxcb-xfixes0:armhf (1.15-1) ... 232s Setting up libogg0:armhf (1.3.5-3) ... 232s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ... 232s Setting up proj-data (9.4.0-1build2) ... 232s Setting up libxrender1:armhf (1:0.9.10-1.1) ... 232s Setting up lammps-data (20240207+dfsg-1.1build2) ... 232s Setting up libxcb-render0:armhf (1.15-1) ... 232s Setting up libdrm-radeon1:armhf (2.4.120-2) ... 232s Setting up libglvnd0:armhf (1.7.0-1) ... 232s Setting up libxcb-glx0:armhf (1.15-1) ... 232s Setting up x11-common (1:7.7+23ubuntu2) ... 233s Setting up libdeflate0:armhf (1.19-1) ... 233s Setting up linux-libc-dev:armhf (6.8.0-22.22) ... 233s Setting up libxcb-shm0:armhf (1.15-1) ... 233s Setting up libgomp1:armhf (14-20240330-1ubuntu2) ... 233s Setting up libjbig0:armhf (2.1-6.1ubuntu1) ... 233s Setting up libaec0:armhf (1.1.2-1) ... 233s Setting up libopengl0:armhf (1.7.0-1) ... 233s Setting up libxxf86vm1:armhf (1:1.1.4-1build3) ... 233s Setting up gcc-12-base:armhf (12.3.0-17ubuntu1) ... 233s Setting up libxnvctrl0:armhf (510.47.03-0ubuntu4) ... 233s Setting up libxcb-present0:armhf (1.15-1) ... 233s Setting up libpython3.12t64:armhf (3.12.2-5ubuntu3) ... 233s Setting up libblas3:armhf (3.12.0-3) ... 233s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 233s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 233s Setting up libmunge2:armhf (0.5.15-4build1) ... 233s Setting up libllvm17t64:armhf (1:17.0.6-9build3) ... 233s Setting up libfreetype6:armhf (2.13.2+dfsg-1build3) ... 233s Setting up libxfixes3:armhf (1:6.0.0-2) ... 233s Setting up libxcb-sync1:armhf (1.15-1) ... 233s Setting up fonts-dejavu-mono (2.37-8) ... 233s Setting up libhwloc15:armhf (2.10.0-1) ... 233s Setting up libmpc3:armhf (1.3.1-1) ... 233s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9) ... 233s Setting up libatomic1:armhf (14-20240330-1ubuntu2) ... 233s Setting up libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 233s Setting up libjsoncpp25:armhf (1.9.5-6) ... 233s Setting up fonts-dejavu-core (2.37-8) ... 233s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 233s Setting up libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 233s Setting up libglapi-mesa:armhf (24.0.3-1ubuntu4) ... 233s Setting up libgfortran5:armhf (14-20240330-1ubuntu2) ... 233s Setting up libvulkan1:armhf (1.3.275.0-1) ... 233s Setting up libwebp7:armhf (1.3.2-0.4build3) ... 233s Setting up libubsan1:armhf (14-20240330-1ubuntu2) ... 233s Setting up libxcb-dri2-0:armhf (1.15-1) ... 233s Setting up ocl-icd-libopencl1:armhf (2.3.2-1) ... 233s Setting up libxshmfence1:armhf (1.3-1build4) ... 233s Setting up libcrypt-dev:armhf (1:4.4.36-4) ... 233s Setting up libxcb-randr0:armhf (1.15-1) ... 233s Setting up libasan8:armhf (14-20240330-1ubuntu2) ... 233s Setting up openmpi-common (4.1.6-7ubuntu1) ... 233s Setting up librdmacm1t64:armhf (50.0-2build2) ... 233s Setting up libxss1:armhf (1:1.2.3-1build2) ... 233s Setting up libisl23:armhf (0.26-3) ... 233s Setting up libc-dev-bin (2.39-0ubuntu8) ... 233s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 233s Setting up libcc1-0:armhf (14-20240330-1ubuntu2) ... 233s Setting up libsz2:armhf (1.1.2-1) ... 233s Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-9) ... 233s Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... 233s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 233s Setting up libfabric1:armhf (1.17.0-3build2) ... 233s Setting up liblapack3:armhf (3.12.0-3) ... 233s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 233s Setting up cpp-12 (12.3.0-17ubuntu1) ... 233s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 233s Setting up libgl1-mesa-dri:armhf (24.0.3-1ubuntu4) ... 233s Setting up libhwloc-plugins:armhf (2.10.0-1) ... 233s Setting up libtbbbind-2-5:armhf (2021.11.0-2ubuntu2) ... 233s Setting up libgcc-12-dev:armhf (12.3.0-17ubuntu1) ... 233s Setting up libpmix2t64:armhf (5.0.1-4.1) ... 233s Setting up libopenmpi3t64:armhf (4.1.6-7ubuntu1) ... 233s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... 233s Setting up libc6-dev:armhf (2.39-0ubuntu8) ... 233s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 233s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ... 233s Setting up openmpi-bin (4.1.6-7ubuntu1) ... 233s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 233s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 233s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ... 233s Setting up libnetcdf19t64:armhf (1:4.9.2-5ubuntu4) ... 233s Setting up libxft2:armhf (2.3.6-1) ... 233s Setting up libglx-mesa0:armhf (24.0.3-1ubuntu4) ... 233s Setting up libglx0:armhf (1.7.0-1) ... 233s Setting up libproj25:armhf (9.4.0-1build2) ... 233s Setting up libtk8.6:armhf (8.6.14-1build1) ... 233s Setting up mpi-default-bin (1.15) ... 233s Setting up libgfortran-12-dev:armhf (12.3.0-17ubuntu1) ... 233s Setting up libtbb12:armhf (2021.11.0-2ubuntu2) ... 233s Setting up libcairo2:armhf (1.18.0-3) ... 233s Setting up libgl1:armhf (1.7.0-1) ... 233s Setting up gcc-12 (12.3.0-17ubuntu1) ... 233s Setting up libglew2.2:armhf (2.2.0-4) ... 233s Setting up libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 233s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 233s Setting up gfortran-12 (12.3.0-17ubuntu1) ... 233s Setting up libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-7.1build2) ... 233s Setting up libkim-api2:armhf (2.3.0-1) ... 233s Setting up liblammps0t64:armhf (20240207+dfsg-1.1build2) ... 233s Setting up lammps (20240207+dfsg-1.1build2) ... 233s Setting up autopkgtest-satdep (0) ... 233s Processing triggers for man-db (2.12.0-4build1) ... 233s Processing triggers for debianutils (5.17build1) ... 233s Processing triggers for libc-bin (2.39-0ubuntu8) ... 251s (Reading database ... 62216 files and directories currently installed.) 251s Removing autopkgtest-satdep (0) ... 256s autopkgtest [17:20:59]: test crack: [----------------------- 258s LAMMPS (7 Feb 2024 - Update 1) 258s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 258s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 258s using 1 OpenMP thread(s) per MPI task 258s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 258s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 258s 2 by 1 by 1 MPI processor grid 258s Created 8141 atoms 258s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 258s create_atoms CPU = 0.001 seconds 258s 302 atoms in group lower 258s 302 atoms in group upper 258s 604 atoms in group boundary 258s 7537 atoms in group mobile 258s 841 atoms in group leftupper 258s 841 atoms in group leftlower 258s Setting atom values ... 258s 841 settings made for type 258s Setting atom values ... 258s 841 settings made for type 258s Setting atom values ... 258s 302 settings made for type 258s Setting atom values ... 258s 302 settings made for type 258s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 258s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 258s Neighbor list info ... 258s update: every = 1 steps, delay = 5 steps, check = yes 258s max neighbors/atom: 2000, page size: 100000 258s master list distance cutoff = 2.8 258s ghost atom cutoff = 2.8 258s binsize = 1.4, bins = 80 56 1 258s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 258s (1) pair lj/cut, perpetual 258s attributes: half, newton on 258s pair build: half/bin/atomonly/newton 258s stencil: half/bin/2d 258s bin: standard 258s Setting up Verlet run ... 258s Unit style : lj 258s Current step : 0 258s Time step : 0.003 258s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes 258s Step Temp E_pair E_mol TotEng Press Volume 258s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 258s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 259s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 259s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 259s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 259s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 259s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 260s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 260s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 260s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 260s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 260s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 260s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 260s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 260s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 261s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 261s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 261s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 261s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 261s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 262s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 262s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 262s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 262s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 262s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 262s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 262s Loop time of 4.27999 on 2 procs for 5000 steps with 8141 atoms 262s 262s Performance: 302804.489 tau/day, 1168.227 timesteps/s, 9.511 Matom-step/s 262s 90.9% CPU use with 2 MPI tasks x 1 OpenMP threads 262s 262s MPI task timing breakdown: 262s Section | min time | avg time | max time |%varavg| %total 262s --------------------------------------------------------------- 262s Pair | 2.8561 | 3.123 | 3.39 | 15.1 | 72.97 262s Neigh | 0.13887 | 0.1485 | 0.15812 | 2.5 | 3.47 262s Comm | 0.2375 | 0.51573 | 0.79395 | 38.7 | 12.05 262s Output | 0.0017101 | 0.0024216 | 0.0031331 | 1.4 | 0.06 262s Modify | 0.25653 | 0.28896 | 0.32139 | 6.0 | 6.75 262s Other | | 0.2013 | | | 4.70 262s 262s Nlocal: 4070.5 ave 4085 max 4056 min 262s Histogram: 1 0 0 0 0 0 0 0 0 1 262s Nghost: 207 ave 208 max 206 min 262s Histogram: 1 0 0 0 0 0 0 0 0 1 262s Neighs: 35700 ave 35927 max 35473 min 262s Histogram: 1 0 0 0 0 0 0 0 0 1 262s 262s Total # of neighbors = 71400 262s Ave neighs/atom = 8.7704213 262s Neighbor list builds = 106 262s Dangerous builds = 0 262s Total wall time: 0:00:04 263s LAMMPS (7 Feb 2024 - Update 1) 268s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 268s using 1 OpenMP thread(s) per MPI task 268s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 268s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 268s 1 by 1 by 1 MPI processor grid 268s Created 8141 atoms 268s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 268s create_atoms CPU = 0.002 seconds 268s 302 atoms in group lower 268s 302 atoms in group upper 268s 604 atoms in group boundary 268s 7537 atoms in group mobile 268s 841 atoms in group leftupper 268s 841 atoms in group leftlower 268s Setting atom values ... 268s 841 settings made for type 268s Setting atom values ... 268s 841 settings made for type 268s Setting atom values ... 268s 302 settings made for type 268s Setting atom values ... 268s 302 settings made for type 268s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 268s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 268s Neighbor list info ... 268s update: every = 1 steps, delay = 5 steps, check = yes 268s max neighbors/atom: 2000, page size: 100000 268s master list distance cutoff = 2.8 268s ghost atom cutoff = 2.8 268s binsize = 1.4, bins = 80 56 1 268s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 268s (1) pair lj/cut, perpetual 268s attributes: half, newton on 268s pair build: half/bin/atomonly/newton 268s stencil: half/bin/2d 268s bin: standard 268s Setting up Verlet run ... 268s Unit style : lj 268s Current step : 0 268s Time step : 0.003 268s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes 268s Step Temp E_pair E_mol TotEng Press Volume 268s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 268s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 268s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 268s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 268s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 268s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 268s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 268s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 268s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 268s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 268s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 268s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 268s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 268s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 268s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 268s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 268s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 268s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 268s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 268s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 268s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 268s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 268s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 269s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 269s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 269s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 269s Loop time of 6.11414 on 1 procs for 5000 steps with 8141 atoms 269s 269s Performance: 211967.777 tau/day, 817.777 timesteps/s, 6.658 Matom-step/s 269s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 269s 269s MPI task timing breakdown: 269s Section | min time | avg time | max time |%varavg| %total 269s --------------------------------------------------------------- 269s Pair | 5.231 | 5.231 | 5.231 | 0.0 | 85.56 269s Neigh | 0.23746 | 0.23746 | 0.23746 | 0.0 | 3.88 269s Comm | 0.016264 | 0.016264 | 0.016264 | 0.0 | 0.27 269s Output | 0.0015808 | 0.0015808 | 0.0015808 | 0.0 | 0.03 269s Modify | 0.4563 | 0.4563 | 0.4563 | 0.0 | 7.46 269s Other | | 0.1715 | | | 2.81 269s 269s Nlocal: 8141 ave 8141 max 8141 min 269s Histogram: 1 0 0 0 0 0 0 0 0 0 269s Nghost: 0 ave 0 max 0 min 269s Histogram: 1 0 0 0 0 0 0 0 0 0 269s Neighs: 71389 ave 71389 max 71389 min 269s Histogram: 1 0 0 0 0 0 0 0 0 0 269s 269s Total # of neighbors = 71389 269s Ave neighs/atom = 8.7690701 269s Neighbor list builds = 100 269s Dangerous builds = 0 269s Total wall time: 0:00:06 269s run: OK 269s autopkgtest [17:21:12]: test crack: -----------------------] 273s autopkgtest [17:21:16]: test crack: - - - - - - - - - - results - - - - - - - - - - 273s crack PASS 276s autopkgtest [17:21:19]: test dipole: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 286s Starting pkgProblemResolver with broken count: 0 286s Starting 2 pkgProblemResolver with broken count: 0 286s Done 286s The following NEW packages will be installed: 286s autopkgtest-satdep 286s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 286s Need to get 0 B/704 B of archives. 286s After this operation, 0 B of additional disk space will be used. 286s Get:1 /tmp/autopkgtest.hjYZk9/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 287s Selecting previously unselected package autopkgtest-satdep. 287s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62216 files and directories currently installed.) 287s Preparing to unpack .../2-autopkgtest-satdep.deb ... 287s Unpacking autopkgtest-satdep (0) ... 287s Setting up autopkgtest-satdep (0) ... 295s (Reading database ... 62216 files and directories currently installed.) 295s Removing autopkgtest-satdep (0) ... 300s autopkgtest [17:21:43]: test dipole: [----------------------- 302s LAMMPS (7 Feb 2024 - Update 1) 302s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 302s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 302s using 1 OpenMP thread(s) per MPI task 302s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 302s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 302s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 302s 2 by 1 by 1 MPI processor grid 302s Created 200 atoms 302s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 302s create_atoms CPU = 0.001 seconds 302s Setting atom values ... 302s 200 settings made for mass 302s Setting atom values ... 302s 200 settings made for dipole/random 302s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 302s Neighbor list info ... 302s update: every = 1 steps, delay = 0 steps, check = yes 302s max neighbors/atom: 2000, page size: 100000 302s master list distance cutoff = 2.8 302s ghost atom cutoff = 2.8 302s binsize = 1.4, bins = 13 13 2 302s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 302s (1) pair lj/cut/dipole/cut, perpetual 302s attributes: half, newton on 302s pair build: half/bin/atomonly/newton 302s stencil: half/bin/2d 302s bin: standard 302s Setting up Verlet run ... 302s Unit style : lj 302s Current step : 0 302s Time step : 0.005 302s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes 302s Step Temp E_pair c_erot TotEng Press 302s 0 0 -2.0965715 0 -2.0965715 -2.4759659 302s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 302s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 302s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 302s 2000 0.44906427 -2.8037479 0.24422576 -2.356929 0.15010432 302s 2500 0.46058471 -2.8143585 0.25012657 -2.3560767 -0.38282545 302s 3000 0.47344306 -2.8070454 0.22839921 -2.3359696 0.0086809905 302s 3500 0.40527008 -2.7047531 0.20199859 -2.3015094 0.28576366 302s 4000 0.45532509 -2.7724376 0.22443356 -2.3193892 -0.026546855 302s 4500 0.43501879 -2.7267497 0.20510275 -2.293906 -0.063127027 302s 5000 0.42443514 -2.745851 0.24060818 -2.3235381 -0.025742709 302s 5500 0.3839334 -2.7073937 0.24270814 -2.32538 -0.07170774 302s 6000 0.42922278 -2.7478329 0.25153908 -2.3207562 -0.47398846 302s 6500 0.45362461 -2.7967795 0.2756071 -2.345423 0.064335127 302s 7000 0.426427 -2.7100719 0.21223279 -2.2857771 0.23817765 303s 7500 0.44329907 -2.7592192 0.25431233 -2.3181366 -0.48160925 303s 8000 0.45710982 -2.746352 0.23112717 -2.2915277 0.067805988 303s 8500 0.45706146 -2.7008059 0.20546196 -2.2460298 -0.11582213 303s 9000 0.46491089 -2.7354016 0.23514028 -2.2728153 -0.25398947 303s 9500 0.44183004 -2.6848933 0.22534954 -2.2452724 -0.047314023 303s 10000 0.42741048 -2.7131911 0.27211413 -2.2879177 0.12679961 303s Loop time of 0.598059 on 2 procs for 10000 steps with 200 atoms 303s 303s Performance: 7223366.876 tau/day, 16720.757 timesteps/s, 3.344 Matom-step/s 303s 98.3% CPU use with 2 MPI tasks x 1 OpenMP threads 303s 303s MPI task timing breakdown: 303s Section | min time | avg time | max time |%varavg| %total 303s --------------------------------------------------------------- 303s Pair | 0.33534 | 0.36423 | 0.39312 | 4.8 | 60.90 303s Neigh | 0.016313 | 0.016941 | 0.017569 | 0.5 | 2.83 303s Comm | 0.1204 | 0.15028 | 0.18016 | 7.7 | 25.13 303s Output | 0.0004742 | 0.00073673 | 0.00099925 | 0.0 | 0.12 303s Modify | 0.031746 | 0.033045 | 0.034344 | 0.7 | 5.53 303s Other | | 0.03283 | | | 5.49 303s 303s Nlocal: 100 ave 106 max 94 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s Nghost: 118.5 ave 120 max 117 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s Neighs: 827.5 ave 911 max 744 min 303s Histogram: 1 0 0 0 0 0 0 0 0 1 303s 303s Total # of neighbors = 1655 303s Ave neighs/atom = 8.275 303s Neighbor list builds = 692 303s Dangerous builds = 0 303s Total wall time: 0:00:00 303s LAMMPS (7 Feb 2024 - Update 1) 304s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 304s using 1 OpenMP thread(s) per MPI task 304s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 304s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 304s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 304s 1 by 1 by 1 MPI processor grid 304s Created 200 atoms 304s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 304s create_atoms CPU = 0.000 seconds 304s Setting atom values ... 304s 200 settings made for mass 304s Setting atom values ... 304s 200 settings made for dipole/random 304s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 304s Neighbor list info ... 304s update: every = 1 steps, delay = 0 steps, check = yes 304s max neighbors/atom: 2000, page size: 100000 304s master list distance cutoff = 2.8 304s ghost atom cutoff = 2.8 304s binsize = 1.4, bins = 13 13 2 304s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 304s (1) pair lj/cut/dipole/cut, perpetual 304s attributes: half, newton on 304s pair build: half/bin/atomonly/newton 304s stencil: half/bin/2d 304s bin: standard 304s Setting up Verlet run ... 304s Unit style : lj 304s Current step : 0 304s Time step : 0.005 304s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes 304s Step Temp E_pair c_erot TotEng Press 304s 0 0 -2.0965715 0 -2.0965715 -2.4759659 304s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 304s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 304s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 304s 2000 0.44906527 -2.8037488 0.24422567 -2.3569289 0.15010101 304s 2500 0.46052127 -2.8142136 0.25010172 -2.355995 -0.38222495 304s 3000 0.48349143 -2.8019094 0.21892648 -2.3208354 -0.021940474 304s 3500 0.42818128 -2.7407155 0.22510159 -2.3146751 -0.01916692 304s 4000 0.43447865 -2.7251092 0.21179003 -2.292803 -0.054070562 304s 4500 0.49679675 -2.7760513 0.19789317 -2.2817386 -0.01374163 304s 5000 0.45369814 -2.7436186 0.22108827 -2.2921889 0.032452862 304s 5500 0.49381571 -2.8052843 0.24840557 -2.3139377 -0.011483656 304s 6000 0.47486262 -2.762914 0.230038 -2.2904257 0.35084172 304s 6500 0.47834729 -2.7628296 0.23242786 -2.286874 -0.084199114 304s 7000 0.4554671 -2.7485479 0.25152556 -2.2953581 -0.41657484 304s 7500 0.48688446 -2.7468396 0.22672266 -2.2623895 0.19798746 304s 8000 0.42093195 -2.6889197 0.24972685 -2.2700924 -0.048022487 304s 8500 0.44505913 -2.65779 0.18787506 -2.2149561 0.23409841 304s 9000 0.48102255 -2.7186808 0.22041232 -2.2400634 0.26761374 304s 9500 0.41955498 -2.688272 0.26237731 -2.2708148 0.1556688 304s 10000 0.47397757 -2.683164 0.2078595 -2.2115563 -0.21881739 304s Loop time of 0.890898 on 1 procs for 10000 steps with 200 atoms 304s 304s Performance: 4849037.650 tau/day, 11224.624 timesteps/s, 2.245 Matom-step/s 304s 98.5% CPU use with 1 MPI tasks x 1 OpenMP threads 304s 304s MPI task timing breakdown: 304s Section | min time | avg time | max time |%varavg| %total 304s --------------------------------------------------------------- 304s Pair | 0.72407 | 0.72407 | 0.72407 | 0.0 | 81.27 304s Neigh | 0.032692 | 0.032692 | 0.032692 | 0.0 | 3.67 304s Comm | 0.048394 | 0.048394 | 0.048394 | 0.0 | 5.43 304s Output | 0.00031088 | 0.00031088 | 0.00031088 | 0.0 | 0.03 304s Modify | 0.057932 | 0.057932 | 0.057932 | 0.0 | 6.50 304s Other | | 0.02749 | | | 3.09 304s 304s Nlocal: 200 ave 200 max 200 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s Nghost: 166 ave 166 max 166 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s Neighs: 1624 ave 1624 max 1624 min 304s Histogram: 1 0 0 0 0 0 0 0 0 0 304s 304s Total # of neighbors = 1624 304s Ave neighs/atom = 8.12 304s Neighbor list builds = 703 304s Dangerous builds = 0 304s Total wall time: 0:00:00 304s run: OK 304s autopkgtest [17:21:47]: test dipole: -----------------------] 308s dipole PASS 308s autopkgtest [17:21:51]: test dipole: - - - - - - - - - - results - - - - - - - - - - 311s autopkgtest [17:21:54]: test ellipse: preparing testbed 321s Reading package lists... 322s Building dependency tree... 322s Reading state information... 322s Starting pkgProblemResolver with broken count: 0 322s Starting 2 pkgProblemResolver with broken count: 0 322s Done 324s The following NEW packages will be installed: 324s autopkgtest-satdep 324s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 324s Need to get 0 B/704 B of archives. 324s After this operation, 0 B of additional disk space will be used. 324s Get:1 /tmp/autopkgtest.hjYZk9/3-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 324s Selecting previously unselected package autopkgtest-satdep. 324s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62216 files and directories currently installed.) 324s Preparing to unpack .../3-autopkgtest-satdep.deb ... 324s Unpacking autopkgtest-satdep (0) ... 324s Setting up autopkgtest-satdep (0) ... 334s (Reading database ... 62216 files and directories currently installed.) 334s Removing autopkgtest-satdep (0) ... 345s autopkgtest [17:22:28]: test ellipse: [----------------------- 347s LAMMPS (7 Feb 2024 - Update 1) 347s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 347s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 347s using 1 OpenMP thread(s) per MPI task 347s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 347s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 347s 2 by 1 by 1 MPI processor grid 347s Created 400 atoms 347s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 347s create_atoms CPU = 0.001 seconds 347s Setting atom values ... 347s 29 settings made for type/fraction 347s Setting atom values ... 347s 371 settings made for mass 347s Setting atom values ... 347s 29 settings made for mass 347s Setting atom values ... 347s 371 settings made for shape 347s Setting atom values ... 347s 29 settings made for shape 347s Setting atom values ... 347s 400 settings made for quat/random 347s 371 atoms in group spheroid 347s 347s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 347s 347s Your simulation uses code contributions which should be cited: 347s - pair gayberne command: doi:10.1063/1.3058435 347s The log file lists these citations in BibTeX format. 347s 347s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 347s 347s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 347s Neighbor list info ... 347s update: every = 1 steps, delay = 0 steps, check = yes 347s max neighbors/atom: 2000, page size: 100000 347s master list distance cutoff = 4.8 347s ghost atom cutoff = 4.8 347s binsize = 2.4, bins = 59 59 3 347s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 347s (1) pair gayberne, perpetual 347s attributes: half, newton on 347s pair build: half/bin/atomonly/newton 347s stencil: half/bin/2d 347s bin: standard 347s Setting up Verlet run ... 347s Unit style : lj 347s Current step : 0 347s Time step : 0.002 347s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 347s Step c_rot E_pair TotEng Press Volume 347s 0 2.3158404 0 2.394 0.04788 20000 347s 100 1.7101139 0 1.7678302 0.034413192 20548.286 347s 200 2.3115592 0 2.3895743 0.04649702 20556.796 347s 300 1.831333 0 1.8931405 0.041256922 18354.646 347s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 347s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 347s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 347s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 347s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 347s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 347s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 347s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 347s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 347s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 347s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 347s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 347s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 347s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 347s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 347s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 347s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 347s Loop time of 0.43081 on 2 procs for 2000 steps with 400 atoms 347s 347s Performance: 802210.336 tau/day, 4642.421 timesteps/s, 1.857 Matom-step/s 347s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 347s 347s MPI task timing breakdown: 347s Section | min time | avg time | max time |%varavg| %total 347s --------------------------------------------------------------- 347s Pair | 0.19553 | 0.21955 | 0.24357 | 5.1 | 50.96 347s Neigh | 0.011008 | 0.011202 | 0.011397 | 0.2 | 2.60 347s Comm | 0.060859 | 0.084457 | 0.10806 | 8.1 | 19.60 347s Output | 0.015424 | 0.01575 | 0.016075 | 0.3 | 3.66 347s Modify | 0.087364 | 0.088261 | 0.089157 | 0.3 | 20.49 347s Other | | 0.01159 | | | 2.69 347s 347s Nlocal: 200 ave 211 max 189 min 347s Histogram: 1 0 0 0 0 0 0 0 0 1 347s Nghost: 215 ave 217 max 213 min 347s Histogram: 1 0 0 0 0 0 0 0 0 1 347s Neighs: 1561 ave 1651 max 1471 min 347s Histogram: 1 0 0 0 0 0 0 0 0 1 347s 347s Total # of neighbors = 3122 347s Ave neighs/atom = 7.805 347s Neighbor list builds = 346 347s Dangerous builds = 0 347s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 347s Setting up Verlet run ... 347s Unit style : lj 347s Current step : 2000 347s Time step : 0.002 347s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes 347s Step c_rot E_pair TotEng Press Volume 347s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 347s 2100 1.9040485 -3.6005672 -1.6802923 0.39862443 989.96894 347s 2200 1.8951971 -3.5921565 -1.6947175 1.0260215 989.96894 347s 2300 2.0029243 -3.7081933 -1.6838652 0.66970186 989.96894 347s 2400 2.027189 -3.7314224 -1.7100024 0.89700378 989.96894 347s 2500 2.0661215 -3.7753463 -1.702413 0.57671879 989.96894 347s 2600 2.0610733 -3.7707904 -1.7111988 0.90914683 989.96894 347s 2700 2.0505106 -3.7599067 -1.7337499 0.65660966 989.96894 347s 2800 2.1106444 -3.8219338 -1.7370714 0.55276913 989.96894 348s 2900 2.0347978 -3.7428385 -1.7135242 0.69752989 989.96894 348s 3000 2.0331089 -3.7397511 -1.7515341 0.052123917 989.96894 348s 3100 1.9983479 -3.7074978 -1.7158075 0.7551458 989.96894 348s 3200 2.1299896 -3.8449355 -1.7171591 1.055861 989.96894 348s 3300 2.079427 -3.7934717 -1.684941 1.1625179 989.96894 348s 3400 2.1499496 -3.8651326 -1.703348 0.58109397 989.96894 348s 3500 2.0901278 -3.8054829 -1.699465 1.0231781 989.96894 348s 3600 2.1041735 -3.8168043 -1.6893938 1.0813513 989.96894 348s 3700 2.0650932 -3.7777761 -1.7224926 1.3120953 989.96894 348s 3800 2.0166275 -3.7282861 -1.7416258 0.78824642 989.96894 348s 3900 2.0726099 -3.7842546 -1.7339991 0.92130013 989.96894 348s 4000 2.1298275 -3.8450909 -1.7237177 0.95785441 989.96894 348s Loop time of 0.430383 on 2 procs for 2000 steps with 400 atoms 348s 348s Performance: 803005.242 tau/day, 4647.021 timesteps/s, 1.859 Matom-step/s 348s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 348s 348s MPI task timing breakdown: 348s Section | min time | avg time | max time |%varavg| %total 348s --------------------------------------------------------------- 348s Pair | 0.28266 | 0.2833 | 0.28395 | 0.1 | 65.83 348s Neigh | 0.0028863 | 0.0032912 | 0.0036962 | 0.7 | 0.76 348s Comm | 0.06904 | 0.070176 | 0.071312 | 0.4 | 16.31 348s Output | 0.016201 | 0.016512 | 0.016823 | 0.2 | 3.84 348s Modify | 0.039416 | 0.043623 | 0.04783 | 2.0 | 10.14 348s Other | | 0.01348 | | | 3.13 348s 348s Nlocal: 200 ave 228 max 172 min 348s Histogram: 1 0 0 0 0 0 0 0 0 1 348s Nghost: 209 ave 215 max 203 min 348s Histogram: 1 0 0 0 0 0 0 0 0 1 348s Neighs: 1639.5 ave 1963 max 1316 min 348s Histogram: 1 0 0 0 0 0 0 0 0 1 348s 348s Total # of neighbors = 3279 348s Ave neighs/atom = 8.1975 348s Neighbor list builds = 50 348s Dangerous builds = 0 348s Total wall time: 0:00:00 348s LAMMPS (7 Feb 2024 - Update 1) 349s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 349s using 1 OpenMP thread(s) per MPI task 349s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 349s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 349s 1 by 1 by 1 MPI processor grid 349s Created 400 atoms 349s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 349s create_atoms CPU = 0.000 seconds 349s Setting atom values ... 349s 29 settings made for type/fraction 349s Setting atom values ... 349s 371 settings made for mass 349s Setting atom values ... 349s 29 settings made for mass 349s Setting atom values ... 349s 371 settings made for shape 349s Setting atom values ... 349s 29 settings made for shape 349s Setting atom values ... 349s 400 settings made for quat/random 349s 371 atoms in group spheroid 349s 349s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 349s 349s Your simulation uses code contributions which should be cited: 349s - pair gayberne command: doi:10.1063/1.3058435 349s The log file lists these citations in BibTeX format. 349s 349s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 349s 349s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 349s Neighbor list info ... 349s update: every = 1 steps, delay = 0 steps, check = yes 349s max neighbors/atom: 2000, page size: 100000 349s master list distance cutoff = 4.8 349s ghost atom cutoff = 4.8 349s binsize = 2.4, bins = 59 59 3 349s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 349s (1) pair gayberne, perpetual 349s attributes: half, newton on 349s pair build: half/bin/atomonly/newton 349s stencil: half/bin/2d 349s bin: standard 349s Setting up Verlet run ... 349s Unit style : lj 349s Current step : 0 349s Time step : 0.002 349s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 349s Step c_rot E_pair TotEng Press Volume 349s 0 2.3158404 0 2.394 0.04788 20000 349s 100 1.7101139 0 1.7678302 0.034413192 20548.286 349s 200 2.3115592 0 2.3895743 0.04649702 20556.796 349s 300 1.831333 0 1.8931405 0.041256922 18354.646 349s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 349s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 349s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 349s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 349s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 349s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 349s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 349s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 349s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 349s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 349s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 349s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 349s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 349s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 349s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 349s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 349s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 349s Loop time of 0.649968 on 1 procs for 2000 steps with 400 atoms 349s 349s Performance: 531718.325 tau/day, 3077.074 timesteps/s, 1.231 Matom-step/s 349s 98.7% CPU use with 1 MPI tasks x 1 OpenMP threads 349s 349s MPI task timing breakdown: 349s Section | min time | avg time | max time |%varavg| %total 349s --------------------------------------------------------------- 349s Pair | 0.43716 | 0.43716 | 0.43716 | 0.0 | 67.26 349s Neigh | 0.021849 | 0.021849 | 0.021849 | 0.0 | 3.36 349s Comm | 0.014379 | 0.014379 | 0.014379 | 0.0 | 2.21 349s Output | 0.021627 | 0.021627 | 0.021627 | 0.0 | 3.33 349s Modify | 0.14517 | 0.14517 | 0.14517 | 0.0 | 22.33 349s Other | | 0.009783 | | | 1.51 349s 349s Nlocal: 400 ave 400 max 400 min 349s Histogram: 1 0 0 0 0 0 0 0 0 0 349s Nghost: 276 ave 276 max 276 min 349s Histogram: 1 0 0 0 0 0 0 0 0 0 349s Neighs: 3122 ave 3122 max 3122 min 349s Histogram: 1 0 0 0 0 0 0 0 0 0 349s 349s Total # of neighbors = 3122 349s Ave neighs/atom = 7.805 349s Neighbor list builds = 346 349s Dangerous builds = 0 349s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 349s Setting up Verlet run ... 349s Unit style : lj 349s Current step : 2000 349s Time step : 0.002 349s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes 349s Step c_rot E_pair TotEng Press Volume 349s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 349s 2100 1.9040485 -3.6005672 -1.6802923 0.39862445 989.96894 349s 2200 1.895197 -3.5921565 -1.6947175 1.0260215 989.96894 349s 2300 2.0029243 -3.7081933 -1.6838652 0.66970181 989.96894 349s 2400 2.027189 -3.7314224 -1.7100024 0.89700379 989.96894 349s 2500 2.0661215 -3.7753462 -1.702413 0.57671817 989.96894 349s 2600 2.0610736 -3.7707907 -1.7111987 0.90914701 989.96894 349s 2700 2.0505116 -3.7599078 -1.7337505 0.65660586 989.96894 349s 2800 2.1106432 -3.8219326 -1.7370705 0.55276071 989.96894 349s 2900 2.0347944 -3.7428349 -1.7135244 0.69753379 989.96894 349s 3000 2.033092 -3.739734 -1.7515318 0.05219688 989.96894 349s 3100 1.9983562 -3.707508 -1.7158135 0.75509883 989.96894 349s 3200 2.1298063 -3.8447512 -1.7171502 1.0568228 989.96894 349s 3300 2.0791428 -3.7931834 -1.6847086 1.1627829 989.96894 349s 3400 2.1498359 -3.8650337 -1.7032074 0.58032554 989.96894 349s 3500 2.0904809 -3.805739 -1.6981978 1.0208226 989.96894 349s 3600 2.1048714 -3.8174009 -1.691117 1.0550021 989.96894 349s 3700 2.0745341 -3.7874614 -1.7155849 1.3035756 989.96894 349s 3800 2.0439729 -3.7569157 -1.7364298 0.76483567 989.96894 349s 3900 2.0498921 -3.7613373 -1.7218798 1.0164212 989.96894 349s 4000 2.0584264 -3.7719072 -1.7005071 0.89500692 989.96894 349s Loop time of 0.708081 on 1 procs for 2000 steps with 400 atoms 349s 349s Performance: 488079.535 tau/day, 2824.534 timesteps/s, 1.130 Matom-step/s 349s 98.6% CPU use with 1 MPI tasks x 1 OpenMP threads 349s 349s MPI task timing breakdown: 349s Section | min time | avg time | max time |%varavg| %total 349s --------------------------------------------------------------- 349s Pair | 0.57099 | 0.57099 | 0.57099 | 0.0 | 80.64 349s Neigh | 0.0063394 | 0.0063394 | 0.0063394 | 0.0 | 0.90 349s Comm | 0.014739 | 0.014739 | 0.014739 | 0.0 | 2.08 349s Output | 0.02149 | 0.02149 | 0.02149 | 0.0 | 3.04 349s Modify | 0.085871 | 0.085871 | 0.085871 | 0.0 | 12.13 349s Other | | 0.008649 | | | 1.22 349s 349s Nlocal: 400 ave 400 max 400 min 349s Histogram: 1 0 0 0 0 0 0 0 0 0 349s Nghost: 284 ave 284 max 284 min 349s Histogram: 1 0 0 0 0 0 0 0 0 0 349s Neighs: 3286 ave 3286 max 3286 min 349s Histogram: 1 0 0 0 0 0 0 0 0 0 349s 349s Total # of neighbors = 3286 349s Ave neighs/atom = 8.215 349s Neighbor list builds = 50 349s Dangerous builds = 0 349s Total wall time: 0:00:01 351s LAMMPS (7 Feb 2024 - Update 1) 351s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 351s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 351s using 1 OpenMP thread(s) per MPI task 351s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 351s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 351s 2 by 1 by 1 MPI processor grid 351s Created 400 atoms 351s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 351s create_atoms CPU = 0.001 seconds 351s Setting atom values ... 351s 29 settings made for type/fraction 351s Setting atom values ... 351s 371 settings made for mass 351s Setting atom values ... 351s 29 settings made for mass 351s Setting atom values ... 351s 371 settings made for shape 351s Setting atom values ... 351s 29 settings made for shape 351s Setting atom values ... 351s 400 settings made for quat/random 351s 371 atoms in group spheroid 351s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 351s Neighbor list info ... 351s update: every = 1 steps, delay = 0 steps, check = yes 351s max neighbors/atom: 2000, page size: 100000 351s master list distance cutoff = 4.8 351s ghost atom cutoff = 4.8 351s binsize = 2.4, bins = 59 59 3 351s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 351s (1) pair resquared, perpetual 351s attributes: half, newton on 351s pair build: half/bin/atomonly/newton 351s stencil: half/bin/2d 351s bin: standard 351s Setting up Verlet run ... 351s Unit style : lj 351s Current step : 0 351s Time step : 0.002 351s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 351s Step c_rot E_pair TotEng Press Volume 351s 0 2.3158404 0 2.394 0.04788 20000 351s 100 1.7101139 0 1.7678302 0.034413192 20548.286 351s 200 2.3115592 0 2.3895743 0.04649702 20556.796 351s 300 1.831333 0 1.8931405 0.041256922 18354.646 351s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 351s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 351s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 351s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 351s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 351s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 351s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 351s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 351s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 351s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 351s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 351s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 351s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 351s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 351s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 351s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 351s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 351s Loop time of 0.695946 on 2 procs for 2000 steps with 400 atoms 351s 351s Performance: 496589.919 tau/day, 2873.784 timesteps/s, 1.150 Matom-step/s 351s 96.4% CPU use with 2 MPI tasks x 1 OpenMP threads 351s 351s MPI task timing breakdown: 351s Section | min time | avg time | max time |%varavg| %total 351s --------------------------------------------------------------- 351s Pair | 0.46861 | 0.47282 | 0.47704 | 0.6 | 67.94 351s Neigh | 0.011551 | 0.011886 | 0.01222 | 0.3 | 1.71 351s Comm | 0.087394 | 0.090944 | 0.094493 | 1.2 | 13.07 351s Output | 0.016259 | 0.016574 | 0.016888 | 0.2 | 2.38 351s Modify | 0.089378 | 0.091034 | 0.092691 | 0.5 | 13.08 351s Other | | 0.01268 | | | 1.82 351s 351s Nlocal: 200 ave 210 max 190 min 351s Histogram: 1 0 0 0 0 0 0 0 0 1 351s Nghost: 164 ave 168 max 160 min 351s Histogram: 1 0 0 0 0 0 0 0 0 1 351s Neighs: 910 ave 958 max 862 min 351s Histogram: 1 0 0 0 0 0 0 0 0 1 351s 351s Total # of neighbors = 1820 351s Ave neighs/atom = 4.55 351s Neighbor list builds = 420 351s Dangerous builds = 0 351s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 351s Setting up Verlet run ... 351s Unit style : lj 351s Current step : 2000 351s Time step : 0.002 351s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes 351s Step c_rot E_pair TotEng Press Volume 351s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 351s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 351s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 351s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 351s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 351s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 351s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 351s 2700 2.0106221 0.13364603 2.1384766 1.1322764 1639.6982 351s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 351s 2900 1.9922852 0.15256969 2.0956529 1.2419163 1639.6982 351s 3000 1.9618081 0.18405952 2.1392907 1.3468022 1639.6982 351s 3100 1.9208141 0.22640846 2.1223515 1.6487932 1639.6982 351s 3200 1.9201454 0.22718165 2.1360381 1.5370081 1639.6982 351s 3300 2.0073185 0.13690917 2.1185875 1.1974013 1639.6982 351s 3400 2.0179674 0.12601938 2.1227813 1.0847666 1639.6982 351s 3500 1.9561087 0.18991131 2.1150364 1.337739 1639.6982 351s 3600 1.9971228 0.14756112 2.1401422 1.2026317 1639.6982 351s 3700 1.9731706 0.1723087 2.1473857 1.273159 1639.6982 351s 3800 2.0001051 0.14443379 2.0995168 1.1502317 1639.6982 351s 3900 1.9911498 0.15371621 2.1424901 1.2279921 1639.6982 351s 4000 1.9825331 0.16267827 2.0899844 1.2154927 1639.6982 351s Loop time of 1.01209 on 2 procs for 2000 steps with 400 atoms 351s 351s Performance: 341472.206 tau/day, 1976.112 timesteps/s, 790.445 katom-step/s 351s 98.5% CPU use with 2 MPI tasks x 1 OpenMP threads 351s 351s MPI task timing breakdown: 351s Section | min time | avg time | max time |%varavg| %total 351s --------------------------------------------------------------- 351s Pair | 0.80197 | 0.84277 | 0.88356 | 4.4 | 83.27 351s Neigh | 0.0022249 | 0.0023806 | 0.0025364 | 0.3 | 0.24 351s Comm | 0.055232 | 0.096943 | 0.13865 | 13.4 | 9.58 351s Output | 0.014306 | 0.014579 | 0.014852 | 0.2 | 1.44 351s Modify | 0.042114 | 0.044868 | 0.047622 | 1.3 | 4.43 351s Other | | 0.01055 | | | 1.04 351s 351s Nlocal: 200 ave 212 max 188 min 351s Histogram: 1 0 0 0 0 0 0 0 0 1 351s Nghost: 171.5 ave 173 max 170 min 351s Histogram: 1 0 0 0 0 0 0 0 0 1 351s Neighs: 880.5 ave 946 max 815 min 351s Histogram: 1 0 0 0 0 0 0 0 0 1 351s 351s Total # of neighbors = 1761 351s Ave neighs/atom = 4.4025 351s Neighbor list builds = 49 351s Dangerous builds = 0 351s Total wall time: 0:00:01 352s LAMMPS (7 Feb 2024 - Update 1) 353s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 353s using 1 OpenMP thread(s) per MPI task 353s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 353s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 353s 1 by 1 by 1 MPI processor grid 353s Created 400 atoms 353s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 353s create_atoms CPU = 0.000 seconds 353s Setting atom values ... 353s 29 settings made for type/fraction 353s Setting atom values ... 353s 371 settings made for mass 353s Setting atom values ... 353s 29 settings made for mass 353s Setting atom values ... 353s 371 settings made for shape 353s Setting atom values ... 353s 29 settings made for shape 353s Setting atom values ... 353s 400 settings made for quat/random 353s 371 atoms in group spheroid 353s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 353s Neighbor list info ... 353s update: every = 1 steps, delay = 0 steps, check = yes 353s max neighbors/atom: 2000, page size: 100000 353s master list distance cutoff = 4.8 353s ghost atom cutoff = 4.8 353s binsize = 2.4, bins = 59 59 3 353s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 353s (1) pair resquared, perpetual 353s attributes: half, newton on 353s pair build: half/bin/atomonly/newton 353s stencil: half/bin/2d 353s bin: standard 353s Setting up Verlet run ... 353s Unit style : lj 353s Current step : 0 353s Time step : 0.002 353s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 353s Step c_rot E_pair TotEng Press Volume 353s 0 2.3158404 0 2.394 0.04788 20000 353s 100 1.7101139 0 1.7678302 0.034413192 20548.286 353s 200 2.3115592 0 2.3895743 0.04649702 20556.796 353s 300 1.831333 0 1.8931405 0.041256922 18354.646 353s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 353s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 353s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 353s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 353s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 353s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 353s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 353s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 353s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 353s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 353s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 353s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 353s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 353s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 353s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 353s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 353s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 353s Loop time of 1.14375 on 1 procs for 2000 steps with 400 atoms 353s 353s Performance: 302163.145 tau/day, 1748.629 timesteps/s, 699.452 katom-step/s 353s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 353s 353s MPI task timing breakdown: 353s Section | min time | avg time | max time |%varavg| %total 353s --------------------------------------------------------------- 353s Pair | 0.92927 | 0.92927 | 0.92927 | 0.0 | 81.25 353s Neigh | 0.02301 | 0.02301 | 0.02301 | 0.0 | 2.01 353s Comm | 0.011766 | 0.011766 | 0.011766 | 0.0 | 1.03 353s Output | 0.021878 | 0.021878 | 0.021878 | 0.0 | 1.91 353s Modify | 0.1475 | 0.1475 | 0.1475 | 0.0 | 12.90 355s Other | | 0.01033 | | | 0.90 355s 355s Nlocal: 400 ave 400 max 400 min 355s Histogram: 1 0 0 0 0 0 0 0 0 0 355s Nghost: 206 ave 206 max 206 min 355s Histogram: 1 0 0 0 0 0 0 0 0 0 355s Neighs: 1820 ave 1820 max 1820 min 355s Histogram: 1 0 0 0 0 0 0 0 0 0 355s 355s Total # of neighbors = 1820 355s Ave neighs/atom = 4.55 355s Neighbor list builds = 420 355s Dangerous builds = 0 355s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 355s Setting up Verlet run ... 355s Unit style : lj 355s Current step : 2000 355s Time step : 0.002 355s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes 355s Step c_rot E_pair TotEng Press Volume 355s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 355s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 355s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 355s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 355s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 355s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 355s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 355s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 355s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 355s 2900 1.9922852 0.15256971 2.0956529 1.2419164 1639.6982 355s 3000 1.9618081 0.18405952 2.1392906 1.3468022 1639.6982 355s 3100 1.9208145 0.22640808 2.1223513 1.6487904 1639.6982 355s 3200 1.9201455 0.22718157 2.136038 1.5370079 1639.6982 355s 3300 2.0073203 0.13690734 2.1185861 1.1973861 1639.6982 355s 3400 2.0179675 0.12601936 2.1227814 1.0847665 1639.6982 355s 3500 1.956107 0.18991303 2.1150378 1.3377467 1639.6982 355s 3600 1.9971207 0.14756338 2.1401427 1.2026439 1639.6982 355s 3700 1.9731785 0.17230049 2.1473634 1.2731222 1639.6982 355s 3800 2.0001027 0.14443629 2.0995017 1.1502317 1639.6982 355s 3900 1.9911478 0.15371832 2.1424588 1.2279852 1639.6982 355s 4000 1.9824541 0.16275998 2.0899755 1.2158078 1639.6982 355s Loop time of 1.80992 on 1 procs for 2000 steps with 400 atoms 355s 355s Performance: 190947.699 tau/day, 1105.021 timesteps/s, 442.009 katom-step/s 355s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 355s 355s MPI task timing breakdown: 355s Section | min time | avg time | max time |%varavg| %total 355s --------------------------------------------------------------- 355s Pair | 1.6764 | 1.6764 | 1.6764 | 0.0 | 92.62 355s Neigh | 0.0045258 | 0.0045258 | 0.0045258 | 0.0 | 0.25 355s Comm | 0.011337 | 0.011337 | 0.011337 | 0.0 | 0.63 355s Output | 0.021854 | 0.021854 | 0.021854 | 0.0 | 1.21 355s Modify | 0.087133 | 0.087133 | 0.087133 | 0.0 | 4.81 355s Other | | 0.008679 | | | 0.48 355s 355s Nlocal: 400 ave 400 max 400 min 355s Histogram: 1 0 0 0 0 0 0 0 0 0 355s Nghost: 215 ave 215 max 215 min 355s Histogram: 1 0 0 0 0 0 0 0 0 0 355s Neighs: 1761 ave 1761 max 1761 min 355s Histogram: 1 0 0 0 0 0 0 0 0 0 355s 355s Total # of neighbors = 1761 355s Ave neighs/atom = 4.4025 355s Neighbor list builds = 49 355s Dangerous builds = 0 355s Total wall time: 0:00:02 355s run: OK 355s autopkgtest [17:22:38]: test ellipse: -----------------------] 358s ellipse PASS 358s autopkgtest [17:22:41]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 362s autopkgtest [17:22:45]: test flow: preparing testbed 371s Reading package lists... 371s Building dependency tree... 371s Reading state information... 372s Starting pkgProblemResolver with broken count: 0 372s Starting 2 pkgProblemResolver with broken count: 0 372s Done 372s The following NEW packages will be installed: 372s autopkgtest-satdep 372s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 372s Need to get 0 B/704 B of archives. 372s After this operation, 0 B of additional disk space will be used. 372s Get:1 /tmp/autopkgtest.hjYZk9/4-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 373s Selecting previously unselected package autopkgtest-satdep. 373s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62216 files and directories currently installed.) 373s Preparing to unpack .../4-autopkgtest-satdep.deb ... 373s Unpacking autopkgtest-satdep (0) ... 373s Setting up autopkgtest-satdep (0) ... 381s (Reading database ... 62216 files and directories currently installed.) 381s Removing autopkgtest-satdep (0) ... 386s autopkgtest [17:23:09]: test flow: [----------------------- 388s LAMMPS (7 Feb 2024 - Update 1) 388s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 388s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 388s using 1 OpenMP thread(s) per MPI task 388s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 388s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 388s 2 by 1 by 1 MPI processor grid 388s Created 420 atoms 388s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 388s create_atoms CPU = 0.000 seconds 388s 60 atoms in group lower 388s 60 atoms in group upper 388s 120 atoms in group boundary 388s 300 atoms in group flow 388s Setting atom values ... 388s 60 settings made for type 388s Setting atom values ... 388s 60 settings made for type 388s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 388s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 388s Neighbor list info ... 388s update: every = 1 steps, delay = 5 steps, check = yes 388s max neighbors/atom: 2000, page size: 100000 388s master list distance cutoff = 1.42246 388s ghost atom cutoff = 1.42246 388s binsize = 0.71123, bins = 37 32 1 388s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 388s (1) pair lj/cut, perpetual 388s attributes: half, newton on 388s pair build: half/bin/atomonly/newton 388s stencil: half/bin/2d 388s bin: standard 388s Setting up Verlet run ... 388s Unit style : lj 388s Current step : 0 388s Time step : 0.003 388s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 388s Step Temp E_pair E_mol TotEng Press Volume 388s 0 1 0 0 0.71190476 0.52314537 571.54286 388s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 388s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 388s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 388s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 388s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 388s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 388s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 388s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 388s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 388s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 388s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 388s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 388s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 388s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 388s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 388s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 388s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 388s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 388s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 388s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 388s Loop time of 0.311148 on 2 procs for 10000 steps with 420 atoms 388s 388s Performance: 8330436.616 tau/day, 32139.030 timesteps/s, 13.498 Matom-step/s 388s 92.6% CPU use with 2 MPI tasks x 1 OpenMP threads 388s 388s MPI task timing breakdown: 388s Section | min time | avg time | max time |%varavg| %total 388s --------------------------------------------------------------- 388s Pair | 0.045819 | 0.046875 | 0.04793 | 0.5 | 15.07 388s Neigh | 0.021436 | 0.021439 | 0.021443 | 0.0 | 6.89 388s Comm | 0.17521 | 0.1787 | 0.18218 | 0.8 | 57.43 388s Output | 0.00035732 | 0.00057772 | 0.00079812 | 0.0 | 0.19 388s Modify | 0.033804 | 0.033925 | 0.034047 | 0.1 | 10.90 388s Other | | 0.02964 | | | 9.52 388s 388s Nlocal: 210 ave 213 max 207 min 388s Histogram: 1 0 0 0 0 0 0 0 0 1 388s Nghost: 50.5 ave 51 max 50 min 388s Histogram: 1 0 0 0 0 0 0 0 0 1 388s Neighs: 480.5 ave 492 max 469 min 388s Histogram: 1 0 0 0 0 0 0 0 0 1 388s 388s Total # of neighbors = 961 388s Ave neighs/atom = 2.2880952 388s Neighbor list builds = 964 388s Dangerous builds = 0 388s Total wall time: 0:00:00 389s LAMMPS (7 Feb 2024 - Update 1) 389s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 389s using 1 OpenMP thread(s) per MPI task 389s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 389s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 389s 1 by 1 by 1 MPI processor grid 389s Created 420 atoms 389s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 389s create_atoms CPU = 0.000 seconds 389s 60 atoms in group lower 389s 60 atoms in group upper 389s 120 atoms in group boundary 389s 300 atoms in group flow 389s Setting atom values ... 389s 60 settings made for type 389s Setting atom values ... 389s 60 settings made for type 389s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 389s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 389s Neighbor list info ... 389s update: every = 1 steps, delay = 5 steps, check = yes 389s max neighbors/atom: 2000, page size: 100000 389s master list distance cutoff = 1.42246 389s ghost atom cutoff = 1.42246 389s binsize = 0.71123, bins = 37 32 1 389s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 389s (1) pair lj/cut, perpetual 389s attributes: half, newton on 389s pair build: half/bin/atomonly/newton 389s stencil: half/bin/2d 389s bin: standard 389s Setting up Verlet run ... 389s Unit style : lj 389s Current step : 0 389s Time step : 0.003 389s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 389s Step Temp E_pair E_mol TotEng Press Volume 389s 0 1 0 0 0.71190476 0.52314537 571.54286 389s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 389s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 389s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 389s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 389s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 389s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 389s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 389s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 389s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 389s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 389s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 389s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 389s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 389s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 389s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 389s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 389s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 389s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 389s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 389s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 389s Loop time of 0.233305 on 1 procs for 10000 steps with 420 atoms 389s 389s Performance: 11109904.395 tau/day, 42862.285 timesteps/s, 18.002 Matom-step/s 389s 93.3% CPU use with 1 MPI tasks x 1 OpenMP threads 389s 389s MPI task timing breakdown: 389s Section | min time | avg time | max time |%varavg| %total 389s --------------------------------------------------------------- 389s Pair | 0.091001 | 0.091001 | 0.091001 | 0.0 | 39.01 389s Neigh | 0.041554 | 0.041554 | 0.041554 | 0.0 | 17.81 389s Comm | 0.015232 | 0.015232 | 0.015232 | 0.0 | 6.53 389s Output | 0.00028492 | 0.00028492 | 0.00028492 | 0.0 | 0.12 389s Modify | 0.057787 | 0.057787 | 0.057787 | 0.0 | 24.77 389s Other | | 0.02745 | | | 11.76 389s 389s Nlocal: 420 ave 420 max 420 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s Nghost: 46 ave 46 max 46 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s Neighs: 952 ave 952 max 952 min 389s Histogram: 1 0 0 0 0 0 0 0 0 0 389s 389s Total # of neighbors = 952 389s Ave neighs/atom = 2.2666667 389s Neighbor list builds = 996 389s Dangerous builds = 0 389s Total wall time: 0:00:00 389s LAMMPS (7 Feb 2024 - Update 1) 389s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 389s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 389s using 1 OpenMP thread(s) per MPI task 389s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 389s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 389s 2 by 1 by 1 MPI processor grid 389s Created 420 atoms 389s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 389s create_atoms CPU = 0.000 seconds 389s 60 atoms in group lower 389s 60 atoms in group upper 389s 120 atoms in group boundary 389s 300 atoms in group flow 389s Setting atom values ... 389s 60 settings made for type 389s Setting atom values ... 389s 60 settings made for type 389s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 389s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 389s Neighbor list info ... 389s update: every = 1 steps, delay = 5 steps, check = yes 389s max neighbors/atom: 2000, page size: 100000 389s master list distance cutoff = 1.42246 389s ghost atom cutoff = 1.42246 389s binsize = 0.71123, bins = 37 32 1 389s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 389s (1) pair lj/cut, perpetual 389s attributes: half, newton on 389s pair build: half/bin/atomonly/newton 389s stencil: half/bin/2d 389s bin: standard 389s Setting up Verlet run ... 389s Unit style : lj 389s Current step : 0 389s Time step : 0.003 389s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 389s Step Temp E_pair E_mol TotEng Press Volume 389s 0 1 0 0 0.71190476 0.52314537 571.54286 389s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 389s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 389s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 389s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 389s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 389s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 389s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 389s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 389s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 389s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 389s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 389s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 389s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 389s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 389s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 389s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 389s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 389s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 389s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 389s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 389s Loop time of 0.216123 on 2 procs for 10000 steps with 420 atoms 389s 389s Performance: 11993180.378 tau/day, 46269.986 timesteps/s, 19.433 Matom-step/s 389s 88.8% CPU use with 2 MPI tasks x 1 OpenMP threads 389s 389s MPI task timing breakdown: 389s Section | min time | avg time | max time |%varavg| %total 389s --------------------------------------------------------------- 389s Pair | 0.049507 | 0.051774 | 0.054041 | 1.0 | 23.96 389s Neigh | 0.01255 | 0.012557 | 0.012563 | 0.0 | 5.81 389s Comm | 0.057907 | 0.061425 | 0.064943 | 1.4 | 28.42 389s Output | 0.00030644 | 0.000505 | 0.00070356 | 0.0 | 0.23 389s Modify | 0.062376 | 0.063435 | 0.064494 | 0.4 | 29.35 389s Other | | 0.02643 | | | 12.23 389s 389s Nlocal: 210 ave 213 max 207 min 389s Histogram: 1 0 0 0 0 0 0 0 0 1 389s Nghost: 50 ave 51 max 49 min 389s Histogram: 1 0 0 0 0 0 0 0 0 1 389s Neighs: 558.5 ave 573 max 544 min 389s Histogram: 1 0 0 0 0 0 0 0 0 1 389s 389s Total # of neighbors = 1117 389s Ave neighs/atom = 2.6595238 389s Neighbor list builds = 562 389s Dangerous builds = 0 389s Total wall time: 0:00:00 389s LAMMPS (7 Feb 2024 - Update 1) 390s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 390s using 1 OpenMP thread(s) per MPI task 390s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 390s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 390s 1 by 1 by 1 MPI processor grid 390s Created 420 atoms 390s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 390s create_atoms CPU = 0.000 seconds 390s 60 atoms in group lower 390s 60 atoms in group upper 390s 120 atoms in group boundary 390s 300 atoms in group flow 390s Setting atom values ... 390s 60 settings made for type 390s Setting atom values ... 390s 60 settings made for type 390s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 390s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 390s Neighbor list info ... 390s update: every = 1 steps, delay = 5 steps, check = yes 390s max neighbors/atom: 2000, page size: 100000 390s master list distance cutoff = 1.42246 390s ghost atom cutoff = 1.42246 390s binsize = 0.71123, bins = 37 32 1 390s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 390s (1) pair lj/cut, perpetual 390s attributes: half, newton on 390s pair build: half/bin/atomonly/newton 390s stencil: half/bin/2d 390s bin: standard 390s Setting up Verlet run ... 390s Unit style : lj 390s Current step : 0 390s Time step : 0.003 390s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 390s Step Temp E_pair E_mol TotEng Press Volume 390s 0 1 0 0 0.71190476 0.52314537 571.54286 390s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 390s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 390s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 390s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 390s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 390s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 390s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 390s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 390s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 390s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 390s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 390s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 390s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 390s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 390s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 390s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 390s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 390s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 390s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 390s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 390s Loop time of 0.263419 on 1 procs for 10000 steps with 420 atoms 390s 390s Performance: 9839845.580 tau/day, 37962.367 timesteps/s, 15.944 Matom-step/s 390s 97.9% CPU use with 1 MPI tasks x 1 OpenMP threads 390s 390s MPI task timing breakdown: 390s Section | min time | avg time | max time |%varavg| %total 390s --------------------------------------------------------------- 390s Pair | 0.099195 | 0.099195 | 0.099195 | 0.0 | 37.66 390s Neigh | 0.023586 | 0.023586 | 0.023586 | 0.0 | 8.95 390s Comm | 0.012129 | 0.012129 | 0.012129 | 0.0 | 4.60 390s Output | 0.0003052 | 0.0003052 | 0.0003052 | 0.0 | 0.12 390s Modify | 0.10152 | 0.10152 | 0.10152 | 0.0 | 38.54 390s Other | | 0.02668 | | | 10.13 390s 390s Nlocal: 420 ave 420 max 420 min 390s Histogram: 1 0 0 0 0 0 0 0 0 0 390s Nghost: 48 ave 48 max 48 min 390s Histogram: 1 0 0 0 0 0 0 0 0 0 390s Neighs: 1124 ave 1124 max 1124 min 390s Histogram: 1 0 0 0 0 0 0 0 0 0 390s 390s Total # of neighbors = 1124 390s Ave neighs/atom = 2.6761905 390s Neighbor list builds = 561 390s Dangerous builds = 0 390s Total wall time: 0:00:00 390s run: OK 390s autopkgtest [17:23:13]: test flow: -----------------------] 394s flow PASS 394s autopkgtest [17:23:17]: test flow: - - - - - - - - - - results - - - - - - - - - - 397s autopkgtest [17:23:20]: test friction: preparing testbed 406s Reading package lists... 406s Building dependency tree... 406s Reading state information... 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 407s The following NEW packages will be installed: 407s autopkgtest-satdep 407s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 407s Need to get 0 B/704 B of archives. 407s After this operation, 0 B of additional disk space will be used. 407s Get:1 /tmp/autopkgtest.hjYZk9/5-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 408s Selecting previously unselected package autopkgtest-satdep. 408s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62216 files and directories currently installed.) 408s Preparing to unpack .../5-autopkgtest-satdep.deb ... 408s Unpacking autopkgtest-satdep (0) ... 408s Setting up autopkgtest-satdep (0) ... 416s (Reading database ... 62216 files and directories currently installed.) 416s Removing autopkgtest-satdep (0) ... 421s autopkgtest [17:23:44]: test friction: [----------------------- 423s LAMMPS (7 Feb 2024 - Update 1) 423s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 423s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 423s using 1 OpenMP thread(s) per MPI task 423s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 423s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 423s 2 by 1 by 1 MPI processor grid 423s Created 750 atoms 423s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 423s create_atoms CPU = 0.000 seconds 423s Created 750 atoms 423s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 423s create_atoms CPU = 0.000 seconds 423s Created 112 atoms 423s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 423s create_atoms CPU = 0.000 seconds 423s Created 112 atoms 423s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 423s create_atoms CPU = 0.000 seconds 423s 750 atoms in group lo 423s 862 atoms in group lo 423s 750 atoms in group hi 423s 862 atoms in group hi 423s 150 atoms in group lo-fixed 423s 150 atoms in group hi-fixed 423s 300 atoms in group boundary 423s 1424 atoms in group mobile 423s Setting atom values ... 423s 150 settings made for type 423s Setting atom values ... 423s 150 settings made for type 423s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 423s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 423s Neighbor list info ... 423s update: every = 1 steps, delay = 5 steps, check = yes 423s max neighbors/atom: 2000, page size: 100000 423s master list distance cutoff = 2.8 423s ghost atom cutoff = 2.8 423s binsize = 1.4, bins = 41 31 1 423s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 423s (1) pair lj/cut, perpetual 423s attributes: half, newton on 423s pair build: half/bin/atomonly/newton 423s stencil: half/bin/2d 423s bin: standard 423s Setting up Verlet run ... 423s Unit style : lj 423s Current step : 0 423s Time step : 0.0025 423s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes 423s Step Temp E_pair E_mol TotEng Press Volume 423s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 423s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 424s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 424s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 424s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 424s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 424s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 424s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 425s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 425s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 425s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 425s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 425s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 425s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 425s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 426s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 426s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 426s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 426s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 426s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 426s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 426s Loop time of 2.93403 on 2 procs for 20000 steps with 1724 atoms 426s 426s Performance: 1472377.639 tau/day, 6816.563 timesteps/s, 11.752 Matom-step/s 426s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 426s 426s MPI task timing breakdown: 426s Section | min time | avg time | max time |%varavg| %total 426s --------------------------------------------------------------- 426s Pair | 1.938 | 2.0727 | 2.2074 | 9.4 | 70.64 426s Neigh | 0.10409 | 0.11481 | 0.12554 | 3.2 | 3.91 426s Comm | 0.23027 | 0.38275 | 0.53523 | 24.6 | 13.05 426s Output | 0.00050796 | 0.00092983 | 0.0013517 | 0.0 | 0.03 426s Modify | 0.21161 | 0.2268 | 0.242 | 3.2 | 7.73 426s Other | | 0.136 | | | 4.64 426s 426s Nlocal: 862 ave 868 max 856 min 426s Histogram: 1 0 0 0 0 0 0 0 0 1 426s Nghost: 160.5 ave 161 max 160 min 426s Histogram: 1 0 0 0 0 0 0 0 0 1 426s Neighs: 7178.5 ave 7223 max 7134 min 426s Histogram: 1 0 0 0 0 0 0 0 0 1 426s 426s Total # of neighbors = 14357 426s Ave neighs/atom = 8.3277262 426s Neighbor list builds = 716 426s Dangerous builds = 0 426s Total wall time: 0:00:02 426s LAMMPS (7 Feb 2024 - Update 1) 431s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 431s using 1 OpenMP thread(s) per MPI task 431s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 431s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 431s 1 by 1 by 1 MPI processor grid 431s Created 750 atoms 431s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 431s create_atoms CPU = 0.000 seconds 431s Created 750 atoms 431s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 431s create_atoms CPU = 0.000 seconds 431s Created 112 atoms 431s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 431s create_atoms CPU = 0.000 seconds 431s Created 112 atoms 431s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 431s create_atoms CPU = 0.000 seconds 431s 750 atoms in group lo 431s 862 atoms in group lo 431s 750 atoms in group hi 431s 862 atoms in group hi 431s 150 atoms in group lo-fixed 431s 150 atoms in group hi-fixed 431s 300 atoms in group boundary 431s 1424 atoms in group mobile 431s Setting atom values ... 431s 150 settings made for type 431s Setting atom values ... 431s 150 settings made for type 431s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 431s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 431s Neighbor list info ... 431s update: every = 1 steps, delay = 5 steps, check = yes 431s max neighbors/atom: 2000, page size: 100000 431s master list distance cutoff = 2.8 431s ghost atom cutoff = 2.8 431s binsize = 1.4, bins = 41 31 1 431s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 431s (1) pair lj/cut, perpetual 431s attributes: half, newton on 431s pair build: half/bin/atomonly/newton 431s stencil: half/bin/2d 431s bin: standard 431s Setting up Verlet run ... 431s Unit style : lj 431s Current step : 0 431s Time step : 0.0025 431s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes 431s Step Temp E_pair E_mol TotEng Press Volume 431s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 431s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 431s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 431s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 431s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 431s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 431s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 431s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 431s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 431s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 431s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 431s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 431s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 431s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 431s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 431s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 431s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 431s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 431s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 432s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 432s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 432s Loop time of 4.97282 on 1 procs for 20000 steps with 1724 atoms 432s 432s Performance: 868722.143 tau/day, 4021.862 timesteps/s, 6.934 Matom-step/s 432s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 432s 432s MPI task timing breakdown: 432s Section | min time | avg time | max time |%varavg| %total 432s --------------------------------------------------------------- 432s Pair | 4.1057 | 4.1057 | 4.1057 | 0.0 | 82.56 432s Neigh | 0.21172 | 0.21172 | 0.21172 | 0.0 | 4.26 432s Comm | 0.050892 | 0.050892 | 0.050892 | 0.0 | 1.02 432s Output | 0.00074229 | 0.00074229 | 0.00074229 | 0.0 | 0.01 432s Modify | 0.44076 | 0.44076 | 0.44076 | 0.0 | 8.86 432s Other | | 0.163 | | | 3.28 432s 432s Nlocal: 1724 ave 1724 max 1724 min 432s Histogram: 1 0 0 0 0 0 0 0 0 0 432s Nghost: 144 ave 144 max 144 min 432s Histogram: 1 0 0 0 0 0 0 0 0 0 432s Neighs: 14364 ave 14364 max 14364 min 432s Histogram: 1 0 0 0 0 0 0 0 0 0 432s 432s Total # of neighbors = 14364 432s Ave neighs/atom = 8.3317865 432s Neighbor list builds = 714 432s Dangerous builds = 0 432s Total wall time: 0:00:04 432s run: OK 432s autopkgtest [17:23:55]: test friction: -----------------------] 435s friction PASS 435s autopkgtest [17:23:58]: test friction: - - - - - - - - - - results - - - - - - - - - - 439s autopkgtest [17:24:02]: test hugo: preparing testbed 449s Reading package lists... 450s Building dependency tree... 450s Reading state information... 450s Starting pkgProblemResolver with broken count: 0 450s Starting 2 pkgProblemResolver with broken count: 0 450s Done 451s The following NEW packages will be installed: 451s autopkgtest-satdep 451s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 451s Need to get 0 B/700 B of archives. 451s After this operation, 0 B of additional disk space will be used. 451s Get:1 /tmp/autopkgtest.hjYZk9/6-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [700 B] 451s Selecting previously unselected package autopkgtest-satdep. 451s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62216 files and directories currently installed.) 451s Preparing to unpack .../6-autopkgtest-satdep.deb ... 451s Unpacking autopkgtest-satdep (0) ... 451s Setting up autopkgtest-satdep (0) ... 459s (Reading database ... 62216 files and directories currently installed.) 459s Removing autopkgtest-satdep (0) ... 465s autopkgtest [17:24:28]: test hugo: [----------------------- 466s LAMMPS (7 Feb 2024 - Update 1) 466s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 466s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 466s using 1 OpenMP thread(s) per MPI task 466s Lattice spacing in x,y,z = 1.4142135 2 2 466s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 466s 1 by 1 by 2 MPI processor grid 466s Created 1000 atoms 466s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 466s create_atoms CPU = 0.000 seconds 466s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 466s Neighbor list info ... 466s update: every = 1 steps, delay = 0 steps, check = yes 466s max neighbors/atom: 2000, page size: 100000 466s master list distance cutoff = 1.8475372 466s ghost atom cutoff = 1.8475372 466s binsize = 0.92376862, bins = 8 11 11 466s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 466s (1) pair lj/cubic, perpetual 466s attributes: half, newton on 466s pair build: half/bin/atomonly/newton 466s stencil: half/bin/3d 466s bin: standard 466s Setting up cg style minimization ... 466s Unit style : lj 466s Current step : 0 466s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 466s (src/min.cpp:219) 466s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes 466s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 466s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 467s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 467s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 467s Loop time of 0.0384055 on 2 procs for 134 steps with 1000 atoms 467s 467s 97.5% CPU use with 2 MPI tasks x 1 OpenMP threads 467s 467s Minimization stats: 467s Stopping criterion = force tolerance 467s Energy initial, next-to-last, final = 467s -6.29375358358574 -6.33442531515467 -6.33442531515467 467s Force two-norm initial, final = 3395.2895 5.5900884e-10 467s Force max component initial, final = 1960.2713 3.2516979e-10 467s Final line search alpha, max atom move = 1 3.2516979e-10 467s Iterations, force evaluations = 134 137 467s 467s MPI task timing breakdown: 467s Section | min time | avg time | max time |%varavg| %total 467s --------------------------------------------------------------- 467s Pair | 0.02173 | 0.024413 | 0.027095 | 1.7 | 63.57 467s Neigh | 0.00037648 | 0.00042098 | 0.00046548 | 0.0 | 1.10 467s Comm | 0.0034558 | 0.0061603 | 0.0088648 | 3.4 | 16.04 467s Output | 2.1401e-05 | 4.1341e-05 | 6.1281e-05 | 0.0 | 0.11 467s Modify | 0 | 0 | 0 | 0.0 | 0.00 467s Other | | 0.00737 | | | 19.19 467s 467s Nlocal: 500 ave 550 max 450 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s Nghost: 1214 ave 1264 max 1164 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s Neighs: 10500 ave 11550 max 9450 min 467s Histogram: 1 0 0 0 0 0 0 0 0 1 467s 467s Total # of neighbors = 21000 467s Ave neighs/atom = 21 467s Neighbor list builds = 1 467s Dangerous builds = 0 467s System init for write_restart ... 467s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 467s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 467s using 1 OpenMP thread(s) per MPI task 467s Reading restart file ... 467s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 467s restoring atom style atomic from restart 467s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 467s 1 by 1 by 2 MPI processor grid 467s restoring pair style lj/cubic from restart 467s 1000 atoms 467s read_restart CPU = 0.001 seconds 467s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 467s Neighbor list info ... 467s update: every = 1 steps, delay = 0 steps, check = yes 467s max neighbors/atom: 2000, page size: 100000 467s master list distance cutoff = 1.7475372 467s ghost atom cutoff = 1.7475372 467s binsize = 0.87376862, bins = 8 12 12 467s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 467s (1) pair lj/cubic, perpetual 467s attributes: half, newton on 467s pair build: half/bin/atomonly/newton 467s stencil: half/bin/3d 467s bin: standard 467s Setting up Verlet run ... 467s Unit style : lj 467s Current step : 0 467s Time step : 0.001 467s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 467s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 467s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 467s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 467s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 467s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 468s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 468s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 469s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 469s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 469s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 470s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 470s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 470s Loop time of 3.56006 on 2 procs for 10000 steps with 1000 atoms 470s 470s Performance: 242692.349 tau/day, 2808.939 timesteps/s, 2.809 Matom-step/s 470s 97.0% CPU use with 2 MPI tasks x 1 OpenMP threads 470s 470s MPI task timing breakdown: 470s Section | min time | avg time | max time |%varavg| %total 470s --------------------------------------------------------------- 470s Pair | 2.1774 | 2.2628 | 2.3482 | 5.7 | 63.56 470s Neigh | 0.085512 | 0.08991 | 0.094309 | 1.5 | 2.53 470s Comm | 0.53178 | 0.62193 | 0.71207 | 11.4 | 17.47 470s Output | 0.00069473 | 0.00081967 | 0.00094461 | 0.0 | 0.02 470s Modify | 0.49493 | 0.49887 | 0.5028 | 0.6 | 14.01 470s Other | | 0.08575 | | | 2.41 470s 470s Nlocal: 500 ave 510 max 490 min 470s Histogram: 1 0 0 0 0 0 0 0 0 1 470s Nghost: 1351.5 ave 1357 max 1346 min 470s Histogram: 1 0 0 0 0 0 0 0 0 1 470s Neighs: 10160.5 ave 10780 max 9541 min 470s Histogram: 1 0 0 0 0 0 0 0 0 1 470s 470s Total # of neighbors = 20321 470s Ave neighs/atom = 20.321 470s Neighbor list builds = 194 470s Dangerous builds = 0 470s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 470s using 1 OpenMP thread(s) per MPI task 470s Reading restart file ... 470s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 470s restoring atom style atomic from restart 470s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 470s 1 by 1 by 2 MPI processor grid 470s restoring pair style lj/cubic from restart 470s 1000 atoms 470s read_restart CPU = 0.001 seconds 470s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 470s Neighbor list info ... 470s update: every = 1 steps, delay = 0 steps, check = yes 470s max neighbors/atom: 2000, page size: 100000 470s master list distance cutoff = 1.7475372 470s ghost atom cutoff = 1.7475372 470s binsize = 0.87376862, bins = 8 12 12 470s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 470s (1) pair lj/cubic, perpetual 470s attributes: half, newton on 470s pair build: half/bin/atomonly/newton 470s stencil: half/bin/3d 470s bin: standard 470s Setting up Verlet run ... 470s Unit style : lj 470s Current step : 0 470s Time step : 0.001 470s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 470s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 470s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 470s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 471s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 471s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 471s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 471s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 472s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 472s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 472s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 473s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 473s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 473s Loop time of 2.72135 on 2 procs for 10000 steps with 1000 atoms 473s 473s Performance: 317489.361 tau/day, 3674.645 timesteps/s, 3.675 Matom-step/s 473s 97.8% CPU use with 2 MPI tasks x 1 OpenMP threads 473s 473s MPI task timing breakdown: 473s Section | min time | avg time | max time |%varavg| %total 473s --------------------------------------------------------------- 473s Pair | 1.9533 | 1.9548 | 1.9563 | 0.1 | 71.83 473s Neigh | 0.0045132 | 0.0045976 | 0.004682 | 0.1 | 0.17 473s Comm | 0.268 | 0.26889 | 0.26979 | 0.2 | 9.88 473s Output | 0.00060408 | 0.00075499 | 0.00090589 | 0.0 | 0.03 473s Modify | 0.42314 | 0.42445 | 0.42575 | 0.2 | 15.60 473s Other | | 0.06787 | | | 2.49 473s 473s Nlocal: 500 ave 503 max 497 min 473s Histogram: 1 0 0 0 0 0 0 0 0 1 473s Nghost: 1214 ave 1217 max 1211 min 473s Histogram: 1 0 0 0 0 0 0 0 0 1 473s Neighs: 10500 ave 10560 max 10440 min 473s Histogram: 1 0 0 0 0 0 0 0 0 1 473s 473s Total # of neighbors = 21000 473s Ave neighs/atom = 21 473s Neighbor list builds = 10 473s Dangerous builds = 0 473s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 473s using 1 OpenMP thread(s) per MPI task 473s Reading restart file ... 473s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 473s restoring atom style atomic from restart 473s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 473s 1 by 1 by 2 MPI processor grid 473s restoring pair style lj/cubic from restart 473s 1000 atoms 473s read_restart CPU = 0.001 seconds 473s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 473s Neighbor list info ... 473s update: every = 1 steps, delay = 0 steps, check = yes 473s max neighbors/atom: 2000, page size: 100000 473s master list distance cutoff = 1.7475372 473s ghost atom cutoff = 1.7475372 473s binsize = 0.87376862, bins = 8 12 12 473s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 473s (1) pair lj/cubic, perpetual 473s attributes: half, newton on 473s pair build: half/bin/atomonly/newton 473s stencil: half/bin/3d 473s bin: standard 473s Setting up Verlet run ... 473s Unit style : lj 473s Current step : 0 473s Time step : 0.001 473s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 473s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 473s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 473s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 473s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 474s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 474s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 474s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 474s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 475s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 475s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 475s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 476s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 476s Loop time of 2.7875 on 2 procs for 10000 steps with 1000 atoms 476s 476s Performance: 309954.838 tau/day, 3587.440 timesteps/s, 3.587 Matom-step/s 476s 98.6% CPU use with 2 MPI tasks x 1 OpenMP threads 476s 476s MPI task timing breakdown: 476s Section | min time | avg time | max time |%varavg| %total 476s --------------------------------------------------------------- 476s Pair | 1.9794 | 1.9848 | 1.9902 | 0.4 | 71.20 476s Neigh | 0.040959 | 0.041254 | 0.04155 | 0.1 | 1.48 476s Comm | 0.26506 | 0.27036 | 0.27566 | 1.0 | 9.70 476s Output | 0.00054605 | 0.00072753 | 0.00090901 | 0.0 | 0.03 476s Modify | 0.42244 | 0.42293 | 0.42342 | 0.1 | 15.17 476s Other | | 0.06744 | | | 2.42 476s 476s Nlocal: 500 ave 503 max 497 min 476s Histogram: 1 0 0 0 0 0 0 0 0 1 476s Nghost: 1217.5 ave 1219 max 1216 min 476s Histogram: 1 0 0 0 0 0 0 0 0 1 476s Neighs: 10291 ave 10353 max 10229 min 476s Histogram: 1 0 0 0 0 0 0 0 0 1 476s 476s Total # of neighbors = 20582 476s Ave neighs/atom = 20.582 476s Neighbor list builds = 89 476s Dangerous builds = 0 476s Total wall time: 0:00:09 476s LAMMPS (7 Feb 2024 - Update 1) 476s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 476s using 1 OpenMP thread(s) per MPI task 476s Lattice spacing in x,y,z = 1.4142135 2 2 476s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 476s 1 by 1 by 1 MPI processor grid 476s Created 1000 atoms 476s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 476s create_atoms CPU = 0.000 seconds 476s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 476s Neighbor list info ... 476s update: every = 1 steps, delay = 0 steps, check = yes 476s max neighbors/atom: 2000, page size: 100000 476s master list distance cutoff = 1.8475372 476s ghost atom cutoff = 1.8475372 476s binsize = 0.92376862, bins = 8 11 11 476s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 476s (1) pair lj/cubic, perpetual 476s attributes: half, newton on 476s pair build: half/bin/atomonly/newton 476s stencil: half/bin/3d 476s bin: standard 476s Setting up cg style minimization ... 476s Unit style : lj 476s Current step : 0 476s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 476s (src/min.cpp:219) 476s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes 476s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 476s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 476s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 476s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 476s Loop time of 0.0609495 on 1 procs for 134 steps with 1000 atoms 476s 476s 95.7% CPU use with 1 MPI tasks x 1 OpenMP threads 476s 476s Minimization stats: 476s Stopping criterion = force tolerance 476s Energy initial, next-to-last, final = 476s -6.29375358358557 -6.33442531515503 -6.33442531515503 476s Force two-norm initial, final = 3395.2895 5.5740327e-10 476s Force max component initial, final = 1960.2713 3.2730334e-10 476s Final line search alpha, max atom move = 1 3.2730334e-10 476s Iterations, force evaluations = 134 137 476s 476s MPI task timing breakdown: 476s Section | min time | avg time | max time |%varavg| %total 476s --------------------------------------------------------------- 476s Pair | 0.047833 | 0.047833 | 0.047833 | 0.0 | 78.48 476s Neigh | 0.00083905 | 0.00083905 | 0.00083905 | 0.0 | 1.38 476s Comm | 0.0012835 | 0.0012835 | 0.0012835 | 0.0 | 2.11 476s Output | 2.688e-05 | 2.688e-05 | 2.688e-05 | 0.0 | 0.04 476s Modify | 0 | 0 | 0 | 0.0 | 0.00 476s Other | | 0.01097 | | | 17.99 476s 476s Nlocal: 1000 ave 1000 max 1000 min 476s Histogram: 1 0 0 0 0 0 0 0 0 0 476s Nghost: 1724 ave 1724 max 1724 min 476s Histogram: 1 0 0 0 0 0 0 0 0 0 476s Neighs: 21000 ave 21000 max 21000 min 476s Histogram: 1 0 0 0 0 0 0 0 0 0 476s 476s Total # of neighbors = 21000 476s Ave neighs/atom = 21 476s Neighbor list builds = 1 476s Dangerous builds = 0 476s System init for write_restart ... 476s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 476s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 476s using 1 OpenMP thread(s) per MPI task 476s Reading restart file ... 476s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 476s restoring atom style atomic from restart 476s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 476s 1 by 1 by 1 MPI processor grid 476s restoring pair style lj/cubic from restart 476s 1000 atoms 476s read_restart CPU = 0.000 seconds 476s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 476s Neighbor list info ... 476s update: every = 1 steps, delay = 0 steps, check = yes 476s max neighbors/atom: 2000, page size: 100000 476s master list distance cutoff = 1.7475372 476s ghost atom cutoff = 1.7475372 476s binsize = 0.87376862, bins = 8 12 12 476s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 481s (1) pair lj/cubic, perpetual 481s attributes: half, newton on 481s pair build: half/bin/atomonly/newton 481s stencil: half/bin/3d 481s bin: standard 481s Setting up Verlet run ... 481s Unit style : lj 481s Current step : 0 481s Time step : 0.001 481s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 481s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 481s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 481s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 481s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 481s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 481s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 481s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 481s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 481s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 481s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 481s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 481s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 481s Loop time of 5.40035 on 1 procs for 10000 steps with 1000 atoms 481s 481s Performance: 159989.696 tau/day, 1851.733 timesteps/s, 1.852 Matom-step/s 481s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 481s 481s MPI task timing breakdown: 481s Section | min time | avg time | max time |%varavg| %total 481s --------------------------------------------------------------- 481s Pair | 4.4107 | 4.4107 | 4.4107 | 0.0 | 81.67 481s Neigh | 0.16868 | 0.16868 | 0.16868 | 0.0 | 3.12 481s Comm | 0.1082 | 0.1082 | 0.1082 | 0.0 | 2.00 481s Output | 0.00057612 | 0.00057612 | 0.00057612 | 0.0 | 0.01 481s Modify | 0.62989 | 0.62989 | 0.62989 | 0.0 | 11.66 481s Other | | 0.08231 | | | 1.52 481s 481s Nlocal: 1000 ave 1000 max 1000 min 481s Histogram: 1 0 0 0 0 0 0 0 0 0 481s Nghost: 1886 ave 1886 max 1886 min 481s Histogram: 1 0 0 0 0 0 0 0 0 0 481s Neighs: 20874 ave 20874 max 20874 min 481s Histogram: 1 0 0 0 0 0 0 0 0 0 481s 481s Total # of neighbors = 20874 481s Ave neighs/atom = 20.874 481s Neighbor list builds = 188 481s Dangerous builds = 0 481s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 481s using 1 OpenMP thread(s) per MPI task 481s Reading restart file ... 481s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 481s restoring atom style atomic from restart 481s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 481s 1 by 1 by 1 MPI processor grid 481s restoring pair style lj/cubic from restart 481s 1000 atoms 481s read_restart CPU = 0.000 seconds 481s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 481s Neighbor list info ... 486s update: every = 1 steps, delay = 0 steps, check = yes 486s max neighbors/atom: 2000, page size: 100000 486s master list distance cutoff = 1.7475372 486s ghost atom cutoff = 1.7475372 486s binsize = 0.87376862, bins = 8 12 12 486s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 486s (1) pair lj/cubic, perpetual 486s attributes: half, newton on 486s pair build: half/bin/atomonly/newton 486s stencil: half/bin/3d 486s bin: standard 486s Setting up Verlet run ... 486s Unit style : lj 486s Current step : 0 486s Time step : 0.001 486s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 486s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 486s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 486s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 486s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 486s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 486s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 486s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 486s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 486s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 486s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 486s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 486s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 486s Loop time of 4.71262 on 1 procs for 10000 steps with 1000 atoms 486s 486s Performance: 183337.637 tau/day, 2121.963 timesteps/s, 2.122 Matom-step/s 486s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 486s 486s MPI task timing breakdown: 486s Section | min time | avg time | max time |%varavg| %total 486s --------------------------------------------------------------- 486s Pair | 3.9171 | 3.9171 | 3.9171 | 0.0 | 83.12 486s Neigh | 0.0098123 | 0.0098123 | 0.0098123 | 0.0 | 0.21 486s Comm | 0.089958 | 0.089958 | 0.089958 | 0.0 | 1.91 486s Output | 0.00055988 | 0.00055988 | 0.00055988 | 0.0 | 0.01 486s Modify | 0.61767 | 0.61767 | 0.61767 | 0.0 | 13.11 486s Other | | 0.07754 | | | 1.65 486s 486s Nlocal: 1000 ave 1000 max 1000 min 486s Histogram: 1 0 0 0 0 0 0 0 0 0 486s Nghost: 1724 ave 1724 max 1724 min 486s Histogram: 1 0 0 0 0 0 0 0 0 0 486s Neighs: 21000 ave 21000 max 21000 min 486s Histogram: 1 0 0 0 0 0 0 0 0 0 486s 486s Total # of neighbors = 21000 486s Ave neighs/atom = 21 486s Neighbor list builds = 11 486s Dangerous builds = 0 486s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 486s using 1 OpenMP thread(s) per MPI task 486s Reading restart file ... 486s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 486s restoring atom style atomic from restart 491s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 491s 1 by 1 by 1 MPI processor grid 491s restoring pair style lj/cubic from restart 491s 1000 atoms 491s read_restart CPU = 0.000 seconds 491s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 491s Neighbor list info ... 491s update: every = 1 steps, delay = 0 steps, check = yes 491s max neighbors/atom: 2000, page size: 100000 491s master list distance cutoff = 1.7475372 491s ghost atom cutoff = 1.7475372 491s binsize = 0.87376862, bins = 8 12 12 491s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 491s (1) pair lj/cubic, perpetual 491s attributes: half, newton on 491s pair build: half/bin/atomonly/newton 491s stencil: half/bin/3d 491s bin: standard 491s Setting up Verlet run ... 491s Unit style : lj 491s Current step : 0 491s Time step : 0.001 491s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 491s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 491s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 491s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 491s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 491s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 491s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 491s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 491s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 491s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 491s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 491s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 491s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 491s Loop time of 4.88869 on 1 procs for 10000 steps with 1000 atoms 491s 491s Performance: 176734.539 tau/day, 2045.539 timesteps/s, 2.046 Matom-step/s 491s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 491s 491s MPI task timing breakdown: 491s Section | min time | avg time | max time |%varavg| %total 491s --------------------------------------------------------------- 491s Pair | 3.9923 | 3.9923 | 3.9923 | 0.0 | 81.66 491s Neigh | 0.086455 | 0.086455 | 0.086455 | 0.0 | 1.77 491s Comm | 0.097118 | 0.097118 | 0.097118 | 0.0 | 1.99 491s Output | 0.00062417 | 0.00062417 | 0.00062417 | 0.0 | 0.01 491s Modify | 0.63231 | 0.63231 | 0.63231 | 0.0 | 12.93 491s Other | | 0.07992 | | | 1.63 491s 491s Nlocal: 1000 ave 1000 max 1000 min 491s Histogram: 1 0 0 0 0 0 0 0 0 0 491s Nghost: 1724 ave 1724 max 1724 min 491s Histogram: 1 0 0 0 0 0 0 0 0 0 491s Neighs: 20654 ave 20654 max 20654 min 491s Histogram: 1 0 0 0 0 0 0 0 0 0 491s 491s Total # of neighbors = 20654 491s Ave neighs/atom = 20.654 491s Neighbor list builds = 94 491s Dangerous builds = 0 491s Total wall time: 0:00:15 491s run: OK 491s autopkgtest [17:24:54]: test hugo: -----------------------] 495s autopkgtest [17:24:58]: test hugo: - - - - - - - - - - results - - - - - - - - - - 495s hugo PASS 498s autopkgtest [17:25:01]: test command1: preparing testbed 526s autopkgtest [17:25:29]: testbed dpkg architecture: armhf 528s autopkgtest [17:25:31]: testbed apt version: 2.7.14build2 528s autopkgtest [17:25:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 535s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 535s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B] 535s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [217 kB] 535s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [11.3 kB] 535s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [834 kB] 535s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [116 kB] 535s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B] 535s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1192 B] 535s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B] 535s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [734 kB] 535s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B] 535s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [5000 B] 535s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B] 537s Fetched 2051 kB in 1s (2188 kB/s) 537s Reading package lists... 551s tee: /proc/self/fd/2: Permission denied 572s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 572s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 572s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 572s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 574s Reading package lists... 574s Reading package lists... 574s Building dependency tree... 574s Reading state information... 574s Calculating upgrade... 575s The following packages will be upgraded: 575s curl libcurl3t64-gnutls libcurl4t64 libpython3.12-minimal 575s libpython3.12-stdlib libsasl2-2 libsasl2-modules libsasl2-modules-db 575s python3-gi python3.12 python3.12-minimal 575s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 575s Need to get 6546 kB of archives. 575s After this operation, 58.4 kB disk space will be freed. 575s Get:1 http://ftpmaster.internal/ubuntu noble/main armhf python3.12 armhf 3.12.2-5ubuntu3 [644 kB] 575s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12-stdlib armhf 3.12.2-5ubuntu3 [1925 kB] 575s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf python3.12-minimal armhf 3.12.2-5ubuntu3 [2004 kB] 575s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12-minimal armhf 3.12.2-5ubuntu3 [817 kB] 575s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf python3-gi armhf 3.48.2-1 [219 kB] 575s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu10 [219 kB] 575s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu10 [296 kB] 575s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu10 [290 kB] 575s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu3 [19.2 kB] 575s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu3 [49.7 kB] 575s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu3 [61.4 kB] 576s Fetched 6546 kB in 1s (8688 kB/s) 576s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58471 files and directories currently installed.) 576s Preparing to unpack .../00-python3.12_3.12.2-5ubuntu3_armhf.deb ... 576s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 576s Preparing to unpack .../01-libpython3.12-stdlib_3.12.2-5ubuntu3_armhf.deb ... 576s Unpacking libpython3.12-stdlib:armhf (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 576s Preparing to unpack .../02-python3.12-minimal_3.12.2-5ubuntu3_armhf.deb ... 576s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 576s Preparing to unpack .../03-libpython3.12-minimal_3.12.2-5ubuntu3_armhf.deb ... 576s Unpacking libpython3.12-minimal:armhf (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 577s Preparing to unpack .../04-python3-gi_3.48.2-1_armhf.deb ... 577s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 577s Preparing to unpack .../05-curl_8.5.0-2ubuntu10_armhf.deb ... 577s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 577s Preparing to unpack .../06-libcurl4t64_8.5.0-2ubuntu10_armhf.deb ... 577s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 577s Preparing to unpack .../07-libcurl3t64-gnutls_8.5.0-2ubuntu10_armhf.deb ... 577s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 577s Preparing to unpack .../08-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_armhf.deb ... 577s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 577s Preparing to unpack .../09-libsasl2-2_2.1.28+dfsg1-5ubuntu3_armhf.deb ... 577s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 577s Preparing to unpack .../10-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_armhf.deb ... 577s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 577s Setting up libcurl4t64:armhf (8.5.0-2ubuntu10) ... 577s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu3) ... 577s Setting up libpython3.12-minimal:armhf (3.12.2-5ubuntu3) ... 577s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10) ... 577s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu3) ... 577s Setting up python3-gi (3.48.2-1) ... 578s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu3) ... 578s Setting up curl (8.5.0-2ubuntu10) ... 578s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 578s Setting up libpython3.12-stdlib:armhf (3.12.2-5ubuntu3) ... 578s Setting up python3.12 (3.12.2-5ubuntu3) ... 579s Processing triggers for systemd (255.4-1ubuntu7) ... 579s Processing triggers for man-db (2.12.0-4build1) ... 580s Processing triggers for libc-bin (2.39-0ubuntu8) ... 580s Reading package lists... 581s Building dependency tree... 581s Reading state information... 581s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 583s autopkgtest [17:26:26]: rebooting testbed after setup commands that affected boot 652s Reading package lists... 653s Building dependency tree... 653s Reading state information... 653s Starting pkgProblemResolver with broken count: 2 653s Starting 2 pkgProblemResolver with broken count: 2 653s Investigating (0) libevent-core-2.1-7t64:armhf < 2.1.12-stable-9ubuntu2 @ii pmK Ib > 653s Broken libevent-core-2.1-7t64:armhf Breaks on libevent-core-2.1-7:armhf < none -> 2.1.12-stable-9 @un puN > (< 2.1.12-stable-9ubuntu2) 653s Considering libevent-core-2.1-7:armhf 7 as a solution to libevent-core-2.1-7t64:armhf 7 653s Re-Instated libevent-core-2.1-7:armhf 653s Investigating (0) libevent-pthreads-2.1-7t64:armhf < none -> 2.1.12-stable-9ubuntu2 @un puN Ib > 653s Broken libevent-pthreads-2.1-7t64:armhf Breaks on libevent-pthreads-2.1-7:armhf < none -> 2.1.12-stable-9 @un puN > (< 2.1.12-stable-9ubuntu2) 653s Considering libevent-pthreads-2.1-7:armhf 4 as a solution to libevent-pthreads-2.1-7t64:armhf 1 653s Re-Instated libevent-pthreads-2.1-7:armhf 653s Done 653s Some packages could not be installed. This may mean that you have 653s requested an impossible situation or if you are using the unstable 653s distribution that some required packages have not yet been created 653s or been moved out of Incoming. 653s The following information may help to resolve the situation: 653s 653s The following packages have unmet dependencies: 653s libevent-core-2.1-7t64 : Breaks: libevent-core-2.1-7 (< 2.1.12-stable-9ubuntu2) but 2.1.12-stable-9 is to be installed 653s libevent-pthreads-2.1-7t64 : Breaks: libevent-pthreads-2.1-7 (< 2.1.12-stable-9ubuntu2) but 2.1.12-stable-9 is to be installed 653s E: Unable to correct problems, you have held broken packages. 653s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 661s Reading package lists... 661s Building dependency tree... 661s Reading state information... 662s Starting pkgProblemResolver with broken count: 0 662s Starting 2 pkgProblemResolver with broken count: 0 662s Done 662s The following additional packages will be installed: 662s autoconf automake autotools-dev cpp-12 fontconfig-config fonts-dejavu-core 662s fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 libasan8 libatomic1 662s libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdeflate0 662s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 662s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 662s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 662s libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 662s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 662s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 662s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev libhwloc-plugins libhwloc15 662s libibverbs-dev libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 662s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 662s liblapack3 liblerc4 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 662s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 662s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 662s libpmix2t64 libproj25 libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 662s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 662s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 662s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 662s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 662s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 662s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 662s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 662s Suggested packages: 662s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 662s cpp-12-doc gcc-12-doc gfortran-12-doc libcoarrays-dev glibc-doc manpages-dev 662s libfftw3-bin libfftw3-dev glew-utils libjs-jquery-ui-docs libtool-doc 662s openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc opencl-icd 662s gfortran | fortran-compiler 662s Recommended packages: 662s manpages manpages-dev libc-devtools libgl1-amber-dri javascript-common 662s lammps-doc libtool libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd 662s python3-mpi4py 662s The following NEW packages will be installed: 662s autoconf automake autopkgtest-satdep autotools-dev cpp-12 fontconfig-config 662s fonts-dejavu-core fonts-dejavu-mono gcc-12 gcc-12-base gfortran-12 libaec0 662s libasan8 libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 662s libcrypt-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 662s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7t64 libevent-dev 662s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 662s libfabric1 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-12-dev 662s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 662s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 662s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev libhwloc-plugins libhwloc15 662s libibverbs-dev libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 662s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 662s liblapack3 liblerc4 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 662s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 662s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 662s libpmix2t64 libproj25 libpython3.12t64 librdmacm1t64 libsharpyuv0 libsz2 662s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 662s libubsan1 libvoro++1 libvtk9.1t64 libvulkan1 libwebp7 libx11-xcb1 662s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 662s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 662s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 linux-libc-dev m4 662s mpi-default-bin mpi-default-dev ocl-icd-libopencl1 openmpi-bin 662s openmpi-common proj-data python3-lammps rpcsvc-proto x11-common zlib1g-dev 662s 0 upgraded, 127 newly installed, 0 to remove and 47 not upgraded. 662s Need to get 135 MB/135 MB of archives. 662s After this operation, 445 MB of additional disk space will be used. 662s Get:1 /tmp/autopkgtest.hjYZk9/7-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 663s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf m4 armhf 1.4.19-4 [235 kB] 663s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf autoconf all 2.71-3 [339 kB] 663s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf autotools-dev all 20220109.1 [44.9 kB] 663s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB] 663s Get:6 http://ftpmaster.internal/ubuntu noble/universe armhf gcc-12-base armhf 12.3.0-17ubuntu1 [46.3 kB] 663s Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libisl23 armhf 0.26-3 [595 kB] 663s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libmpc3 armhf 1.3.1-1 [46.4 kB] 663s Get:9 http://ftpmaster.internal/ubuntu noble/universe armhf cpp-12 armhf 12.3.0-17ubuntu1 [8159 kB] 664s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 664s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 664s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 664s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libcc1-0 armhf 14-20240330-1ubuntu2 [39.1 kB] 664s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libgomp1 armhf 14-20240330-1ubuntu2 [125 kB] 664s Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libatomic1 armhf 14-20240330-1ubuntu2 [7846 B] 664s Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libasan8 armhf 14-20240330-1ubuntu2 [2940 kB] 664s Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libubsan1 armhf 14-20240330-1ubuntu2 [1153 kB] 664s Get:18 http://ftpmaster.internal/ubuntu noble/universe armhf libgcc-12-dev armhf 12.3.0-17ubuntu1 [855 kB] 664s Get:19 http://ftpmaster.internal/ubuntu noble/universe armhf gcc-12 armhf 12.3.0-17ubuntu1 [16.2 MB] 665s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libgfortran5 armhf 14-20240330-1ubuntu2 [312 kB] 665s Get:21 http://ftpmaster.internal/ubuntu noble/universe armhf libgfortran-12-dev armhf 12.3.0-17ubuntu1 [350 kB] 665s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libc-dev-bin armhf 2.39-0ubuntu8 [19.1 kB] 665s Get:23 http://ftpmaster.internal/ubuntu noble/main armhf linux-libc-dev armhf 6.8.0-22.22 [1555 kB] 665s Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt-dev armhf 1:4.4.36-4 [136 kB] 665s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu6 [63.7 kB] 665s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libc6-dev armhf 2.39-0ubuntu8 [1352 kB] 665s Get:27 http://ftpmaster.internal/ubuntu noble/universe armhf gfortran-12 armhf 12.3.0-17ubuntu1 [8571 kB] 665s Get:28 http://ftpmaster.internal/ubuntu noble/universe armhf libaec0 armhf 1.1.2-1 [20.7 kB] 665s Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.12.0-3 [123 kB] 665s Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB] 665s Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 665s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB] 665s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] 665s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] 665s Get:35 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] 665s Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libcairo2 armhf 1.18.0-3 [482 kB] 665s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.19-1 [41.3 kB] 665s Get:38 http://ftpmaster.internal/ubuntu noble/universe armhf libdouble-conversion3 armhf 3.3.0-1 [38.3 kB] 665s Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [18.6 kB] 665s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-nouveau2 armhf 2.4.120-2 [15.2 kB] 665s Get:41 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-radeon1 armhf 2.4.120-2 [18.2 kB] 665s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-9ubuntu2 [127 kB] 665s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libevent-extra-2.1-7t64 armhf 2.1.12-stable-9ubuntu2 [56.1 kB] 665s Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-9ubuntu2 [7540 B] 665s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf libevent-openssl-2.1-7t64 armhf 2.1.12-stable-9ubuntu2 [13.0 kB] 665s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf libevent-dev armhf 2.1.12-stable-9ubuntu2 [264 kB] 665s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf librdmacm1t64 armhf 50.0-2build2 [63.0 kB] 665s Get:48 http://ftpmaster.internal/ubuntu noble/universe armhf libfabric1 armhf 1.17.0-3build2 [419 kB] 665s Get:49 http://ftpmaster.internal/ubuntu noble/main armhf libfftw3-double3 armhf 3.3.10-1ubuntu3 [369 kB] 665s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf libvulkan1 armhf 1.3.275.0-1 [122 kB] 665s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libglapi-mesa armhf 24.0.3-1ubuntu4 [47.8 kB] 665s Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libllvm17t64 armhf 1:17.0.6-9build3 [25.3 MB] 666s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-dri3-0 armhf 1.15-1 [6778 B] 666s Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libgl1-mesa-dri armhf 24.0.3-1ubuntu4 [7201 kB] 666s Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libglvnd0 armhf 1.7.0-1 [83.7 kB] 666s Get:56 http://ftpmaster.internal/ubuntu noble/main armhf libx11-xcb1 armhf 2:1.8.7-1 [7744 B] 666s Get:57 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-dri2-0 armhf 1.15-1 [6872 B] 666s Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-glx0 armhf 1.15-1 [22.6 kB] 666s Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-present0 armhf 1.15-1 [5526 B] 666s Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-randr0 armhf 1.15-1 [16.8 kB] 666s Get:61 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-sync1 armhf 1.15-1 [8794 B] 666s Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-xfixes0 armhf 1.15-1 [10.0 kB] 666s Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libxfixes3 armhf 1:6.0.0-2 [8966 B] 666s Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libxshmfence1 armhf 1.3-1build4 [5080 B] 666s Get:65 http://ftpmaster.internal/ubuntu noble/main armhf libxxf86vm1 armhf 1:1.1.4-1build3 [9068 B] 666s Get:66 http://ftpmaster.internal/ubuntu noble/main armhf libglx-mesa0 armhf 24.0.3-1ubuntu4 [132 kB] 666s Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libglx0 armhf 1.7.0-1 [37.0 kB] 666s Get:68 http://ftpmaster.internal/ubuntu noble/main armhf libgl1 armhf 1.7.0-1 [104 kB] 666s Get:69 http://ftpmaster.internal/ubuntu noble/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2 [38.9 kB] 666s Get:70 http://ftpmaster.internal/ubuntu noble/universe armhf libglew2.2 armhf 2.2.0-4 [214 kB] 666s Get:71 http://ftpmaster.internal/ubuntu noble/universe armhf libsz2 armhf 1.1.2-1 [5262 B] 666s Get:72 http://ftpmaster.internal/ubuntu noble/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu4 [1337 kB] 666s Get:73 http://ftpmaster.internal/ubuntu noble/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu4 [54.8 kB] 666s Get:74 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc15 armhf 2.10.0-1 [145 kB] 666s Get:75 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] 666s Get:76 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 666s Get:77 http://ftpmaster.internal/ubuntu noble/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 666s Get:78 http://ftpmaster.internal/ubuntu noble/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 666s Get:79 http://ftpmaster.internal/ubuntu noble/main armhf libjsoncpp25 armhf 1.9.5-6 [72.5 kB] 666s Get:80 http://ftpmaster.internal/ubuntu noble/universe armhf libkim-api2 armhf 2.3.0-1 [536 kB] 666s Get:81 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.12.0-3 [2085 kB] 666s Get:82 http://ftpmaster.internal/ubuntu noble/universe armhf libnetcdf19t64 armhf 1:4.9.2-5ubuntu4 [422 kB] 666s Get:83 http://ftpmaster.internal/ubuntu noble/universe armhf libmunge2 armhf 0.5.15-4build1 [17.1 kB] 666s Get:84 http://ftpmaster.internal/ubuntu noble/main armhf libpciaccess0 armhf 0.17-3 [16.3 kB] 666s Get:85 http://ftpmaster.internal/ubuntu noble/main armhf libxnvctrl0 armhf 510.47.03-0ubuntu4 [11.6 kB] 666s Get:86 http://ftpmaster.internal/ubuntu noble/universe armhf ocl-icd-libopencl1 armhf 2.3.2-1 [34.4 kB] 666s Get:87 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc-plugins armhf 2.10.0-1 [13.7 kB] 666s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libpmix2t64 armhf 5.0.1-4.1build1 [616 kB] 666s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libopenmpi3t64 armhf 4.1.6-7ubuntu2 [2041 kB] 666s Get:90 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12t64 armhf 3.12.2-5ubuntu3 [2078 kB] 667s Get:91 http://ftpmaster.internal/ubuntu noble/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 667s Get:92 http://ftpmaster.internal/ubuntu noble/main armhf libogg0 armhf 1.3.5-3 [20.1 kB] 667s Get:93 http://ftpmaster.internal/ubuntu noble/main armhf libopengl0 armhf 1.7.0-1 [36.2 kB] 667s Get:94 http://ftpmaster.internal/ubuntu noble/universe armhf proj-data all 9.4.0-1build2 [7885 kB] 667s Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB] 667s Get:96 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu1 [152 kB] 667s Get:97 http://ftpmaster.internal/ubuntu noble/main armhf libsharpyuv0 armhf 1.3.2-0.4build3 [13.6 kB] 667s Get:98 http://ftpmaster.internal/ubuntu noble/main armhf libwebp7 armhf 1.3.2-0.4build3 [183 kB] 667s Get:99 http://ftpmaster.internal/ubuntu noble/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu2 [178 kB] 667s Get:100 http://ftpmaster.internal/ubuntu noble/universe armhf libproj25 armhf 9.4.0-1build2 [1281 kB] 667s Get:101 http://ftpmaster.internal/ubuntu noble/universe armhf libtbbmalloc2 armhf 2021.11.0-2ubuntu2 [52.3 kB] 667s Get:102 http://ftpmaster.internal/ubuntu noble/universe armhf libtbbbind-2-5 armhf 2021.11.0-2ubuntu2 [14.6 kB] 667s Get:103 http://ftpmaster.internal/ubuntu noble/universe armhf libtbb12 armhf 2021.11.0-2ubuntu2 [88.0 kB] 667s Get:104 http://ftpmaster.internal/ubuntu noble/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB] 667s Get:105 http://ftpmaster.internal/ubuntu noble/main armhf libtheora0 armhf 1.1.1+dfsg.1-16.1build3 [142 kB] 667s Get:106 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB] 667s Get:107 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] 667s Get:108 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] 667s Get:109 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB] 667s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libvtk9.1t64 armhf 9.1.0+really9.1.0+dfsg2-7.1build3 [17.7 MB] 668s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf liblammps0t64 armhf 20240207+dfsg-1.1build3 [6812 kB] 668s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf openmpi-common all 4.1.6-7ubuntu2 [170 kB] 668s Get:113 http://ftpmaster.internal/ubuntu noble/main armhf libnl-3-dev armhf 3.7.0-0.3 [94.4 kB] 668s Get:114 http://ftpmaster.internal/ubuntu noble/main armhf libnl-route-3-dev armhf 3.7.0-0.3 [196 kB] 668s Get:115 http://ftpmaster.internal/ubuntu noble/main armhf libibverbs-dev armhf 50.0-2build2 [201 kB] 668s Get:116 http://ftpmaster.internal/ubuntu noble/main armhf libnuma-dev armhf 2.0.18-1 [34.9 kB] 668s Get:117 http://ftpmaster.internal/ubuntu noble/main armhf libltdl7 armhf 2.4.7-7 [37.9 kB] 668s Get:118 http://ftpmaster.internal/ubuntu noble/main armhf libltdl-dev armhf 2.4.7-7 [166 kB] 668s Get:119 http://ftpmaster.internal/ubuntu noble/universe armhf libhwloc-dev armhf 2.10.0-1 [242 kB] 668s Get:120 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu2 [880 kB] 668s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libpmix-dev armhf 5.0.1-4.1build1 [3936 kB] 668s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf openmpi-bin armhf 4.1.6-7ubuntu2 [83.2 kB] 668s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libopenmpi-dev armhf 4.1.6-7ubuntu2 [816 kB] 668s Get:124 http://ftpmaster.internal/ubuntu noble/universe armhf mpi-default-dev armhf 1.15 [3116 B] 668s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf liblammps-dev armhf 20240207+dfsg-1.1build3 [113 kB] 668s Get:126 http://ftpmaster.internal/ubuntu noble/universe armhf mpi-default-bin armhf 1.15 [2336 B] 668s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf python3-lammps armhf 20240207+dfsg-1.1build3 [70.4 kB] 669s Fetched 135 MB in 6s (22.7 MB/s) 669s Selecting previously unselected package m4. 669s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58472 files and directories currently installed.) 669s Preparing to unpack .../000-m4_1.4.19-4_armhf.deb ... 669s Unpacking m4 (1.4.19-4) ... 669s Selecting previously unselected package autoconf. 669s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 669s Unpacking autoconf (2.71-3) ... 669s Selecting previously unselected package autotools-dev. 669s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 669s Unpacking autotools-dev (20220109.1) ... 669s Selecting previously unselected package automake. 669s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 669s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 669s Selecting previously unselected package gcc-12-base:armhf. 669s Preparing to unpack .../004-gcc-12-base_12.3.0-17ubuntu1_armhf.deb ... 669s Unpacking gcc-12-base:armhf (12.3.0-17ubuntu1) ... 669s Selecting previously unselected package libisl23:armhf. 669s Preparing to unpack .../005-libisl23_0.26-3_armhf.deb ... 669s Unpacking libisl23:armhf (0.26-3) ... 669s Selecting previously unselected package libmpc3:armhf. 669s Preparing to unpack .../006-libmpc3_1.3.1-1_armhf.deb ... 669s Unpacking libmpc3:armhf (1.3.1-1) ... 669s Selecting previously unselected package cpp-12. 669s Preparing to unpack .../007-cpp-12_12.3.0-17ubuntu1_armhf.deb ... 669s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 669s Selecting previously unselected package fonts-dejavu-mono. 669s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 669s Unpacking fonts-dejavu-mono (2.37-8) ... 669s Selecting previously unselected package fonts-dejavu-core. 669s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 669s Unpacking fonts-dejavu-core (2.37-8) ... 669s Selecting previously unselected package fontconfig-config. 669s Preparing to unpack .../010-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 670s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 670s Selecting previously unselected package libcc1-0:armhf. 670s Preparing to unpack .../011-libcc1-0_14-20240330-1ubuntu2_armhf.deb ... 670s Unpacking libcc1-0:armhf (14-20240330-1ubuntu2) ... 670s Selecting previously unselected package libgomp1:armhf. 670s Preparing to unpack .../012-libgomp1_14-20240330-1ubuntu2_armhf.deb ... 670s Unpacking libgomp1:armhf (14-20240330-1ubuntu2) ... 670s Selecting previously unselected package libatomic1:armhf. 670s Preparing to unpack .../013-libatomic1_14-20240330-1ubuntu2_armhf.deb ... 670s Unpacking libatomic1:armhf (14-20240330-1ubuntu2) ... 670s Selecting previously unselected package libasan8:armhf. 670s Preparing to unpack .../014-libasan8_14-20240330-1ubuntu2_armhf.deb ... 670s Unpacking libasan8:armhf (14-20240330-1ubuntu2) ... 670s Selecting previously unselected package libubsan1:armhf. 670s Preparing to unpack .../015-libubsan1_14-20240330-1ubuntu2_armhf.deb ... 670s Unpacking libubsan1:armhf (14-20240330-1ubuntu2) ... 670s Selecting previously unselected package libgcc-12-dev:armhf. 670s Preparing to unpack .../016-libgcc-12-dev_12.3.0-17ubuntu1_armhf.deb ... 670s Unpacking libgcc-12-dev:armhf (12.3.0-17ubuntu1) ... 670s Selecting previously unselected package gcc-12. 670s Preparing to unpack .../017-gcc-12_12.3.0-17ubuntu1_armhf.deb ... 670s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 670s Selecting previously unselected package libgfortran5:armhf. 670s Preparing to unpack .../018-libgfortran5_14-20240330-1ubuntu2_armhf.deb ... 670s Unpacking libgfortran5:armhf (14-20240330-1ubuntu2) ... 670s Selecting previously unselected package libgfortran-12-dev:armhf. 670s Preparing to unpack .../019-libgfortran-12-dev_12.3.0-17ubuntu1_armhf.deb ... 670s Unpacking libgfortran-12-dev:armhf (12.3.0-17ubuntu1) ... 670s Selecting previously unselected package libc-dev-bin. 670s Preparing to unpack .../020-libc-dev-bin_2.39-0ubuntu8_armhf.deb ... 670s Unpacking libc-dev-bin (2.39-0ubuntu8) ... 670s Selecting previously unselected package linux-libc-dev:armhf. 670s Preparing to unpack .../021-linux-libc-dev_6.8.0-22.22_armhf.deb ... 670s Unpacking linux-libc-dev:armhf (6.8.0-22.22) ... 671s Selecting previously unselected package libcrypt-dev:armhf. 671s Preparing to unpack .../022-libcrypt-dev_1%3a4.4.36-4_armhf.deb ... 671s Unpacking libcrypt-dev:armhf (1:4.4.36-4) ... 671s Selecting previously unselected package rpcsvc-proto. 671s Preparing to unpack .../023-rpcsvc-proto_1.4.2-0ubuntu6_armhf.deb ... 671s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 671s Selecting previously unselected package libc6-dev:armhf. 671s Preparing to unpack .../024-libc6-dev_2.39-0ubuntu8_armhf.deb ... 671s Unpacking libc6-dev:armhf (2.39-0ubuntu8) ... 671s Selecting previously unselected package gfortran-12. 671s Preparing to unpack .../025-gfortran-12_12.3.0-17ubuntu1_armhf.deb ... 671s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 671s Selecting previously unselected package libaec0:armhf. 671s Preparing to unpack .../026-libaec0_1.1.2-1_armhf.deb ... 671s Unpacking libaec0:armhf (1.1.2-1) ... 671s Selecting previously unselected package libblas3:armhf. 671s Preparing to unpack .../027-libblas3_3.12.0-3_armhf.deb ... 671s Unpacking libblas3:armhf (3.12.0-3) ... 671s Selecting previously unselected package libfreetype6:armhf. 671s Preparing to unpack .../028-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ... 671s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ... 671s Selecting previously unselected package libfontconfig1:armhf. 671s Preparing to unpack .../029-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 671s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 671s Selecting previously unselected package libpixman-1-0:armhf. 671s Preparing to unpack .../030-libpixman-1-0_0.42.2-1_armhf.deb ... 671s Unpacking libpixman-1-0:armhf (0.42.2-1) ... 671s Selecting previously unselected package libxcb-render0:armhf. 671s Preparing to unpack .../031-libxcb-render0_1.15-1_armhf.deb ... 671s Unpacking libxcb-render0:armhf (1.15-1) ... 671s Selecting previously unselected package libxcb-shm0:armhf. 671s Preparing to unpack .../032-libxcb-shm0_1.15-1_armhf.deb ... 671s Unpacking libxcb-shm0:armhf (1.15-1) ... 671s Selecting previously unselected package libxrender1:armhf. 671s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1_armhf.deb ... 671s Unpacking libxrender1:armhf (1:0.9.10-1.1) ... 671s Selecting previously unselected package libcairo2:armhf. 671s Preparing to unpack .../034-libcairo2_1.18.0-3_armhf.deb ... 671s Unpacking libcairo2:armhf (1.18.0-3) ... 671s Selecting previously unselected package libdeflate0:armhf. 671s Preparing to unpack .../035-libdeflate0_1.19-1_armhf.deb ... 671s Unpacking libdeflate0:armhf (1.19-1) ... 671s Selecting previously unselected package libdouble-conversion3:armhf. 671s Preparing to unpack .../036-libdouble-conversion3_3.3.0-1_armhf.deb ... 671s Unpacking libdouble-conversion3:armhf (3.3.0-1) ... 671s Selecting previously unselected package libdrm-amdgpu1:armhf. 671s Preparing to unpack .../037-libdrm-amdgpu1_2.4.120-2_armhf.deb ... 671s Unpacking libdrm-amdgpu1:armhf (2.4.120-2) ... 671s Selecting previously unselected package libdrm-nouveau2:armhf. 671s Preparing to unpack .../038-libdrm-nouveau2_2.4.120-2_armhf.deb ... 671s Unpacking libdrm-nouveau2:armhf (2.4.120-2) ... 671s Selecting previously unselected package libdrm-radeon1:armhf. 671s Preparing to unpack .../039-libdrm-radeon1_2.4.120-2_armhf.deb ... 671s Unpacking libdrm-radeon1:armhf (2.4.120-2) ... 671s Selecting previously unselected package libevent-2.1-7t64:armhf. 671s Preparing to unpack .../040-libevent-2.1-7t64_2.1.12-stable-9ubuntu2_armhf.deb ... 671s Unpacking libevent-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 671s Selecting previously unselected package libevent-extra-2.1-7t64:armhf. 671s Preparing to unpack .../041-libevent-extra-2.1-7t64_2.1.12-stable-9ubuntu2_armhf.deb ... 671s Unpacking libevent-extra-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 671s Selecting previously unselected package libevent-pthreads-2.1-7t64:armhf. 671s Preparing to unpack .../042-libevent-pthreads-2.1-7t64_2.1.12-stable-9ubuntu2_armhf.deb ... 671s Unpacking libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 671s Selecting previously unselected package libevent-openssl-2.1-7t64:armhf. 671s Preparing to unpack .../043-libevent-openssl-2.1-7t64_2.1.12-stable-9ubuntu2_armhf.deb ... 671s Unpacking libevent-openssl-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 671s Selecting previously unselected package libevent-dev. 671s Preparing to unpack .../044-libevent-dev_2.1.12-stable-9ubuntu2_armhf.deb ... 671s Unpacking libevent-dev (2.1.12-stable-9ubuntu2) ... 671s Selecting previously unselected package librdmacm1t64:armhf. 671s Preparing to unpack .../045-librdmacm1t64_50.0-2build2_armhf.deb ... 671s Unpacking librdmacm1t64:armhf (50.0-2build2) ... 671s Selecting previously unselected package libfabric1:armhf. 671s Preparing to unpack .../046-libfabric1_1.17.0-3build2_armhf.deb ... 671s Unpacking libfabric1:armhf (1.17.0-3build2) ... 672s Selecting previously unselected package libfftw3-double3:armhf. 672s Preparing to unpack .../047-libfftw3-double3_3.3.10-1ubuntu3_armhf.deb ... 672s Unpacking libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 672s Selecting previously unselected package libvulkan1:armhf. 672s Preparing to unpack .../048-libvulkan1_1.3.275.0-1_armhf.deb ... 672s Unpacking libvulkan1:armhf (1.3.275.0-1) ... 672s Selecting previously unselected package libglapi-mesa:armhf. 672s Preparing to unpack .../049-libglapi-mesa_24.0.3-1ubuntu4_armhf.deb ... 672s Unpacking libglapi-mesa:armhf (24.0.3-1ubuntu4) ... 672s Selecting previously unselected package libllvm17t64:armhf. 672s Preparing to unpack .../050-libllvm17t64_1%3a17.0.6-9build3_armhf.deb ... 672s Unpacking libllvm17t64:armhf (1:17.0.6-9build3) ... 672s Selecting previously unselected package libxcb-dri3-0:armhf. 672s Preparing to unpack .../051-libxcb-dri3-0_1.15-1_armhf.deb ... 672s Unpacking libxcb-dri3-0:armhf (1.15-1) ... 672s Selecting previously unselected package libgl1-mesa-dri:armhf. 672s Preparing to unpack .../052-libgl1-mesa-dri_24.0.3-1ubuntu4_armhf.deb ... 672s Unpacking libgl1-mesa-dri:armhf (24.0.3-1ubuntu4) ... 673s Selecting previously unselected package libglvnd0:armhf. 673s Preparing to unpack .../053-libglvnd0_1.7.0-1_armhf.deb ... 673s Unpacking libglvnd0:armhf (1.7.0-1) ... 673s Selecting previously unselected package libx11-xcb1:armhf. 673s Preparing to unpack .../054-libx11-xcb1_2%3a1.8.7-1_armhf.deb ... 673s Unpacking libx11-xcb1:armhf (2:1.8.7-1) ... 673s Selecting previously unselected package libxcb-dri2-0:armhf. 673s Preparing to unpack .../055-libxcb-dri2-0_1.15-1_armhf.deb ... 673s Unpacking libxcb-dri2-0:armhf (1.15-1) ... 673s Selecting previously unselected package libxcb-glx0:armhf. 673s Preparing to unpack .../056-libxcb-glx0_1.15-1_armhf.deb ... 673s Unpacking libxcb-glx0:armhf (1.15-1) ... 673s Selecting previously unselected package libxcb-present0:armhf. 673s Preparing to unpack .../057-libxcb-present0_1.15-1_armhf.deb ... 673s Unpacking libxcb-present0:armhf (1.15-1) ... 673s Selecting previously unselected package libxcb-randr0:armhf. 673s Preparing to unpack .../058-libxcb-randr0_1.15-1_armhf.deb ... 673s Unpacking libxcb-randr0:armhf (1.15-1) ... 673s Selecting previously unselected package libxcb-sync1:armhf. 673s Preparing to unpack .../059-libxcb-sync1_1.15-1_armhf.deb ... 673s Unpacking libxcb-sync1:armhf (1.15-1) ... 673s Selecting previously unselected package libxcb-xfixes0:armhf. 673s Preparing to unpack .../060-libxcb-xfixes0_1.15-1_armhf.deb ... 673s Unpacking libxcb-xfixes0:armhf (1.15-1) ... 673s Selecting previously unselected package libxfixes3:armhf. 673s Preparing to unpack .../061-libxfixes3_1%3a6.0.0-2_armhf.deb ... 673s Unpacking libxfixes3:armhf (1:6.0.0-2) ... 673s Selecting previously unselected package libxshmfence1:armhf. 673s Preparing to unpack .../062-libxshmfence1_1.3-1build4_armhf.deb ... 673s Unpacking libxshmfence1:armhf (1.3-1build4) ... 673s Selecting previously unselected package libxxf86vm1:armhf. 673s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build3_armhf.deb ... 673s Unpacking libxxf86vm1:armhf (1:1.1.4-1build3) ... 673s Selecting previously unselected package libglx-mesa0:armhf. 673s Preparing to unpack .../064-libglx-mesa0_24.0.3-1ubuntu4_armhf.deb ... 673s Unpacking libglx-mesa0:armhf (24.0.3-1ubuntu4) ... 673s Selecting previously unselected package libglx0:armhf. 673s Preparing to unpack .../065-libglx0_1.7.0-1_armhf.deb ... 673s Unpacking libglx0:armhf (1.7.0-1) ... 673s Selecting previously unselected package libgl1:armhf. 673s Preparing to unpack .../066-libgl1_1.7.0-1_armhf.deb ... 673s Unpacking libgl1:armhf (1.7.0-1) ... 673s Selecting previously unselected package libgl2ps1.4. 673s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2_armhf.deb ... 673s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 673s Selecting previously unselected package libglew2.2:armhf. 673s Preparing to unpack .../068-libglew2.2_2.2.0-4_armhf.deb ... 673s Unpacking libglew2.2:armhf (2.2.0-4) ... 673s Selecting previously unselected package libsz2:armhf. 673s Preparing to unpack .../069-libsz2_1.1.2-1_armhf.deb ... 673s Unpacking libsz2:armhf (1.1.2-1) ... 673s Selecting previously unselected package libhdf5-103-1t64:armhf. 673s Preparing to unpack .../070-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 673s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ... 673s Selecting previously unselected package libhdf5-hl-100t64:armhf. 673s Preparing to unpack .../071-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_armhf.deb ... 673s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ... 673s Selecting previously unselected package libhwloc15:armhf. 673s Preparing to unpack .../072-libhwloc15_2.10.0-1_armhf.deb ... 673s Unpacking libhwloc15:armhf (2.10.0-1) ... 673s Selecting previously unselected package libjpeg-turbo8:armhf. 673s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ... 673s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 673s Selecting previously unselected package libjpeg8:armhf. 673s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_armhf.deb ... 673s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 673s Selecting previously unselected package libjs-jquery. 673s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 673s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 673s Selecting previously unselected package libjs-jquery-ui. 673s Preparing to unpack .../076-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 673s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 673s Selecting previously unselected package libjsoncpp25:armhf. 673s Preparing to unpack .../077-libjsoncpp25_1.9.5-6_armhf.deb ... 673s Unpacking libjsoncpp25:armhf (1.9.5-6) ... 673s Selecting previously unselected package libkim-api2:armhf. 673s Preparing to unpack .../078-libkim-api2_2.3.0-1_armhf.deb ... 673s Unpacking libkim-api2:armhf (2.3.0-1) ... 673s Selecting previously unselected package liblapack3:armhf. 673s Preparing to unpack .../079-liblapack3_3.12.0-3_armhf.deb ... 673s Unpacking liblapack3:armhf (3.12.0-3) ... 673s Selecting previously unselected package libnetcdf19t64:armhf. 673s Preparing to unpack .../080-libnetcdf19t64_1%3a4.9.2-5ubuntu4_armhf.deb ... 673s Unpacking libnetcdf19t64:armhf (1:4.9.2-5ubuntu4) ... 673s Selecting previously unselected package libmunge2:armhf. 674s Preparing to unpack .../081-libmunge2_0.5.15-4build1_armhf.deb ... 674s Unpacking libmunge2:armhf (0.5.15-4build1) ... 674s Selecting previously unselected package libpciaccess0:armhf. 674s Preparing to unpack .../082-libpciaccess0_0.17-3_armhf.deb ... 674s Unpacking libpciaccess0:armhf (0.17-3) ... 674s Selecting previously unselected package libxnvctrl0:armhf. 674s Preparing to unpack .../083-libxnvctrl0_510.47.03-0ubuntu4_armhf.deb ... 674s Unpacking libxnvctrl0:armhf (510.47.03-0ubuntu4) ... 674s Selecting previously unselected package ocl-icd-libopencl1:armhf. 674s Preparing to unpack .../084-ocl-icd-libopencl1_2.3.2-1_armhf.deb ... 674s Unpacking ocl-icd-libopencl1:armhf (2.3.2-1) ... 674s Selecting previously unselected package libhwloc-plugins:armhf. 674s Preparing to unpack .../085-libhwloc-plugins_2.10.0-1_armhf.deb ... 674s Unpacking libhwloc-plugins:armhf (2.10.0-1) ... 674s Selecting previously unselected package libpmix2t64:armhf. 674s Preparing to unpack .../086-libpmix2t64_5.0.1-4.1build1_armhf.deb ... 674s Unpacking libpmix2t64:armhf (5.0.1-4.1build1) ... 674s Selecting previously unselected package libopenmpi3t64:armhf. 674s Preparing to unpack .../087-libopenmpi3t64_4.1.6-7ubuntu2_armhf.deb ... 674s Unpacking libopenmpi3t64:armhf (4.1.6-7ubuntu2) ... 674s Selecting previously unselected package libpython3.12t64:armhf. 674s Preparing to unpack .../088-libpython3.12t64_3.12.2-5ubuntu3_armhf.deb ... 674s Unpacking libpython3.12t64:armhf (3.12.2-5ubuntu3) ... 674s Selecting previously unselected package libvoro++1. 674s Preparing to unpack .../089-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 674s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 674s Selecting previously unselected package libogg0:armhf. 674s Preparing to unpack .../090-libogg0_1.3.5-3_armhf.deb ... 674s Unpacking libogg0:armhf (1.3.5-3) ... 674s Selecting previously unselected package libopengl0:armhf. 674s Preparing to unpack .../091-libopengl0_1.7.0-1_armhf.deb ... 674s Unpacking libopengl0:armhf (1.7.0-1) ... 674s Selecting previously unselected package proj-data. 674s Preparing to unpack .../092-proj-data_9.4.0-1build2_all.deb ... 674s Unpacking proj-data (9.4.0-1build2) ... 674s Selecting previously unselected package libjbig0:armhf. 674s Preparing to unpack .../093-libjbig0_2.1-6.1ubuntu1_armhf.deb ... 674s Unpacking libjbig0:armhf (2.1-6.1ubuntu1) ... 674s Selecting previously unselected package liblerc4:armhf. 674s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu1_armhf.deb ... 674s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu1) ... 674s Selecting previously unselected package libsharpyuv0:armhf. 674s Preparing to unpack .../095-libsharpyuv0_1.3.2-0.4build3_armhf.deb ... 674s Unpacking libsharpyuv0:armhf (1.3.2-0.4build3) ... 674s Selecting previously unselected package libwebp7:armhf. 674s Preparing to unpack .../096-libwebp7_1.3.2-0.4build3_armhf.deb ... 674s Unpacking libwebp7:armhf (1.3.2-0.4build3) ... 674s Selecting previously unselected package libtiff6:armhf. 674s Preparing to unpack .../097-libtiff6_4.5.1+git230720-4ubuntu2_armhf.deb ... 674s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... 674s Selecting previously unselected package libproj25:armhf. 674s Preparing to unpack .../098-libproj25_9.4.0-1build2_armhf.deb ... 674s Unpacking libproj25:armhf (9.4.0-1build2) ... 674s Selecting previously unselected package libtbbmalloc2:armhf. 674s Preparing to unpack .../099-libtbbmalloc2_2021.11.0-2ubuntu2_armhf.deb ... 674s Unpacking libtbbmalloc2:armhf (2021.11.0-2ubuntu2) ... 674s Selecting previously unselected package libtbbbind-2-5:armhf. 674s Preparing to unpack .../100-libtbbbind-2-5_2021.11.0-2ubuntu2_armhf.deb ... 674s Unpacking libtbbbind-2-5:armhf (2021.11.0-2ubuntu2) ... 674s Selecting previously unselected package libtbb12:armhf. 674s Preparing to unpack .../101-libtbb12_2021.11.0-2ubuntu2_armhf.deb ... 674s Unpacking libtbb12:armhf (2021.11.0-2ubuntu2) ... 674s Selecting previously unselected package libtcl8.6:armhf. 674s Preparing to unpack .../102-libtcl8.6_8.6.14+dfsg-1build1_armhf.deb ... 674s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 674s Selecting previously unselected package libtheora0:armhf. 674s Preparing to unpack .../103-libtheora0_1.1.1+dfsg.1-16.1build3_armhf.deb ... 674s Unpacking libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 674s Selecting previously unselected package libxft2:armhf. 674s Preparing to unpack .../104-libxft2_2.3.6-1_armhf.deb ... 674s Unpacking libxft2:armhf (2.3.6-1) ... 674s Selecting previously unselected package x11-common. 674s Preparing to unpack .../105-x11-common_1%3a7.7+23ubuntu2_all.deb ... 674s Unpacking x11-common (1:7.7+23ubuntu2) ... 674s Selecting previously unselected package libxss1:armhf. 674s Preparing to unpack .../106-libxss1_1%3a1.2.3-1build2_armhf.deb ... 674s Unpacking libxss1:armhf (1:1.2.3-1build2) ... 675s Selecting previously unselected package libtk8.6:armhf. 675s Preparing to unpack .../107-libtk8.6_8.6.14-1build1_armhf.deb ... 675s Unpacking libtk8.6:armhf (8.6.14-1build1) ... 675s Selecting previously unselected package libvtk9.1t64:armhf. 675s Preparing to unpack .../108-libvtk9.1t64_9.1.0+really9.1.0+dfsg2-7.1build3_armhf.deb ... 675s Unpacking libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-7.1build3) ... 675s Selecting previously unselected package liblammps0t64:armhf. 675s Preparing to unpack .../109-liblammps0t64_20240207+dfsg-1.1build3_armhf.deb ... 675s Unpacking liblammps0t64:armhf (20240207+dfsg-1.1build3) ... 675s Selecting previously unselected package openmpi-common. 675s Preparing to unpack .../110-openmpi-common_4.1.6-7ubuntu2_all.deb ... 675s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 675s Selecting previously unselected package libnl-3-dev:armhf. 675s Preparing to unpack .../111-libnl-3-dev_3.7.0-0.3_armhf.deb ... 675s Unpacking libnl-3-dev:armhf (3.7.0-0.3) ... 675s Selecting previously unselected package libnl-route-3-dev:armhf. 675s Preparing to unpack .../112-libnl-route-3-dev_3.7.0-0.3_armhf.deb ... 675s Unpacking libnl-route-3-dev:armhf (3.7.0-0.3) ... 675s Selecting previously unselected package libibverbs-dev:armhf. 675s Preparing to unpack .../113-libibverbs-dev_50.0-2build2_armhf.deb ... 675s Unpacking libibverbs-dev:armhf (50.0-2build2) ... 675s Selecting previously unselected package libnuma-dev:armhf. 675s Preparing to unpack .../114-libnuma-dev_2.0.18-1_armhf.deb ... 675s Unpacking libnuma-dev:armhf (2.0.18-1) ... 675s Selecting previously unselected package libltdl7:armhf. 675s Preparing to unpack .../115-libltdl7_2.4.7-7_armhf.deb ... 675s Unpacking libltdl7:armhf (2.4.7-7) ... 676s Selecting previously unselected package libltdl-dev:armhf. 677s Preparing to unpack .../116-libltdl-dev_2.4.7-7_armhf.deb ... 677s Unpacking libltdl-dev:armhf (2.4.7-7) ... 677s Selecting previously unselected package libhwloc-dev:armhf. 677s Preparing to unpack .../117-libhwloc-dev_2.10.0-1_armhf.deb ... 677s Unpacking libhwloc-dev:armhf (2.10.0-1) ... 677s Selecting previously unselected package zlib1g-dev:armhf. 677s Preparing to unpack .../118-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ... 677s Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ... 677s Selecting previously unselected package libpmix-dev:armhf. 677s Preparing to unpack .../119-libpmix-dev_5.0.1-4.1build1_armhf.deb ... 677s Unpacking libpmix-dev:armhf (5.0.1-4.1build1) ... 677s Selecting previously unselected package openmpi-bin. 677s Preparing to unpack .../120-openmpi-bin_4.1.6-7ubuntu2_armhf.deb ... 677s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 677s Selecting previously unselected package libopenmpi-dev:armhf. 677s Preparing to unpack .../121-libopenmpi-dev_4.1.6-7ubuntu2_armhf.deb ... 677s Unpacking libopenmpi-dev:armhf (4.1.6-7ubuntu2) ... 677s Selecting previously unselected package mpi-default-dev. 677s Preparing to unpack .../122-mpi-default-dev_1.15_armhf.deb ... 677s Unpacking mpi-default-dev (1.15) ... 677s Selecting previously unselected package liblammps-dev. 677s Preparing to unpack .../123-liblammps-dev_20240207+dfsg-1.1build3_armhf.deb ... 677s Unpacking liblammps-dev (20240207+dfsg-1.1build3) ... 677s Selecting previously unselected package mpi-default-bin. 677s Preparing to unpack .../124-mpi-default-bin_1.15_armhf.deb ... 677s Unpacking mpi-default-bin (1.15) ... 677s Selecting previously unselected package python3-lammps. 677s Preparing to unpack .../125-python3-lammps_20240207+dfsg-1.1build3_armhf.deb ... 677s Unpacking python3-lammps (20240207+dfsg-1.1build3) ... 677s Selecting previously unselected package autopkgtest-satdep. 677s Preparing to unpack .../126-7-autopkgtest-satdep.deb ... 677s Unpacking autopkgtest-satdep (0) ... 677s Setting up libxcb-dri3-0:armhf (1.15-1) ... 677s Setting up libtbbmalloc2:armhf (2021.11.0-2ubuntu2) ... 677s Setting up libpixman-1-0:armhf (0.42.2-1) ... 677s Setting up libsharpyuv0:armhf (1.3.2-0.4build3) ... 677s Setting up libx11-xcb1:armhf (2:1.8.7-1) ... 677s Setting up libpciaccess0:armhf (0.17-3) ... 677s Setting up libdouble-conversion3:armhf (3.3.0-1) ... 677s Setting up libdrm-nouveau2:armhf (2.4.120-2) ... 677s Setting up libxcb-xfixes0:armhf (1.15-1) ... 677s Setting up libogg0:armhf (1.3.5-3) ... 677s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu1) ... 677s Setting up proj-data (9.4.0-1build2) ... 677s Setting up libxrender1:armhf (1:0.9.10-1.1) ... 677s Setting up libxcb-render0:armhf (1.15-1) ... 677s Setting up libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 677s Setting up libdrm-radeon1:armhf (2.4.120-2) ... 677s Setting up libglvnd0:armhf (1.7.0-1) ... 677s Setting up libxcb-glx0:armhf (1.15-1) ... 677s Setting up libevent-openssl-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 677s Setting up x11-common (1:7.7+23ubuntu2) ... 677s Setting up libdeflate0:armhf (1.19-1) ... 677s Setting up linux-libc-dev:armhf (6.8.0-22.22) ... 677s Setting up m4 (1.4.19-4) ... 677s Setting up libevent-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 677s Setting up libxcb-shm0:armhf (1.15-1) ... 677s Setting up libgomp1:armhf (14-20240330-1ubuntu2) ... 677s Setting up libjbig0:armhf (2.1-6.1ubuntu1) ... 677s Setting up libaec0:armhf (1.1.2-1) ... 677s Setting up libopengl0:armhf (1.7.0-1) ... 677s Setting up libxxf86vm1:armhf (1:1.1.4-1build3) ... 677s Setting up gcc-12-base:armhf (12.3.0-17ubuntu1) ... 677s Setting up libxnvctrl0:armhf (510.47.03-0ubuntu4) ... 677s Setting up libxcb-present0:armhf (1.15-1) ... 677s Setting up libpython3.12t64:armhf (3.12.2-5ubuntu3) ... 677s Setting up autotools-dev (20220109.1) ... 677s Setting up libblas3:armhf (3.12.0-3) ... 677s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 677s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 677s Setting up libmunge2:armhf (0.5.15-4build1) ... 677s Setting up libllvm17t64:armhf (1:17.0.6-9build3) ... 677s Setting up libfreetype6:armhf (2.13.2+dfsg-1build3) ... 677s Setting up libxfixes3:armhf (1:6.0.0-2) ... 677s Setting up libxcb-sync1:armhf (1.15-1) ... 677s Setting up fonts-dejavu-mono (2.37-8) ... 677s Setting up libhwloc15:armhf (2.10.0-1) ... 677s Setting up libmpc3:armhf (1.3.1-1) ... 677s Setting up libatomic1:armhf (14-20240330-1ubuntu2) ... 677s Setting up libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 677s Setting up libjsoncpp25:armhf (1.9.5-6) ... 677s Setting up fonts-dejavu-core (2.37-8) ... 677s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 677s Setting up libltdl7:armhf (2.4.7-7) ... 677s Setting up libfftw3-double3:armhf (3.3.10-1ubuntu3) ... 677s Setting up libglapi-mesa:armhf (24.0.3-1ubuntu4) ... 677s Setting up libgfortran5:armhf (14-20240330-1ubuntu2) ... 677s Setting up libvulkan1:armhf (1.3.275.0-1) ... 677s Setting up autoconf (2.71-3) ... 677s Setting up libevent-extra-2.1-7t64:armhf (2.1.12-stable-9ubuntu2) ... 677s Setting up libwebp7:armhf (1.3.2-0.4build3) ... 677s Setting up libubsan1:armhf (14-20240330-1ubuntu2) ... 677s Setting up libxcb-dri2-0:armhf (1.15-1) ... 677s Setting up libnl-3-dev:armhf (3.7.0-0.3) ... 677s Setting up ocl-icd-libopencl1:armhf (2.3.2-1) ... 677s Setting up libxshmfence1:armhf (1.3-1build4) ... 677s Setting up libcrypt-dev:armhf (1:4.4.36-4) ... 677s Setting up libxcb-randr0:armhf (1.15-1) ... 677s Setting up libasan8:armhf (14-20240330-1ubuntu2) ... 677s Setting up openmpi-common (4.1.6-7ubuntu2) ... 677s Setting up librdmacm1t64:armhf (50.0-2build2) ... 677s Setting up libxss1:armhf (1:1.2.3-1build2) ... 677s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 677s Setting up libisl23:armhf (0.26-3) ... 677s Setting up libc-dev-bin (2.39-0ubuntu8) ... 677s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 677s Setting up libcc1-0:armhf (14-20240330-1ubuntu2) ... 677s Setting up libsz2:armhf (1.1.2-1) ... 677s Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... 677s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 677s Setting up automake (1:1.16.5-1.3ubuntu1) ... 677s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 677s Setting up libfabric1:armhf (1.17.0-3build2) ... 677s Setting up liblapack3:armhf (3.12.0-3) ... 677s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 677s Setting up cpp-12 (12.3.0-17ubuntu1) ... 677s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 677s Setting up libgl1-mesa-dri:armhf (24.0.3-1ubuntu4) ... 677s Setting up libhwloc-plugins:armhf (2.10.0-1) ... 677s Setting up libtbbbind-2-5:armhf (2021.11.0-2ubuntu2) ... 677s Setting up libnl-route-3-dev:armhf (3.7.0-0.3) ... 677s Setting up libltdl-dev:armhf (2.4.7-7) ... 677s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 677s Setting up libgcc-12-dev:armhf (12.3.0-17ubuntu1) ... 677s Setting up libevent-dev (2.1.12-stable-9ubuntu2) ... 677s Setting up libpmix2t64:armhf (5.0.1-4.1build1) ... 677s Setting up libopenmpi3t64:armhf (4.1.6-7ubuntu2) ... 677s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu2) ... 677s Setting up libc6-dev:armhf (2.39-0ubuntu8) ... 677s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 677s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ... 677s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 677s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 677s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 677s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ... 677s Setting up libnetcdf19t64:armhf (1:4.9.2-5ubuntu4) ... 677s Setting up libxft2:armhf (2.3.6-1) ... 677s Setting up libglx-mesa0:armhf (24.0.3-1ubuntu4) ... 677s Setting up libglx0:armhf (1.7.0-1) ... 677s Setting up libproj25:armhf (9.4.0-1build2) ... 677s Setting up libtk8.6:armhf (8.6.14-1build1) ... 677s Setting up mpi-default-bin (1.15) ... 677s Setting up libgfortran-12-dev:armhf (12.3.0-17ubuntu1) ... 677s Setting up libtbb12:armhf (2021.11.0-2ubuntu2) ... 677s Setting up libibverbs-dev:armhf (50.0-2build2) ... 677s Setting up libcairo2:armhf (1.18.0-3) ... 677s Setting up libnuma-dev:armhf (2.0.18-1) ... 677s Setting up libgl1:armhf (1.7.0-1) ... 677s Setting up gcc-12 (12.3.0-17ubuntu1) ... 677s Setting up libglew2.2:armhf (2.2.0-4) ... 677s Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ... 677s Setting up libtheora0:armhf (1.1.1+dfsg.1-16.1build3) ... 677s Setting up libhwloc-dev:armhf (2.10.0-1) ... 677s Setting up libpmix-dev:armhf (5.0.1-4.1build1) ... 677s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 677s Setting up gfortran-12 (12.3.0-17ubuntu1) ... 677s Setting up libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-7.1build3) ... 677s Setting up libopenmpi-dev:armhf (4.1.6-7ubuntu2) ... 677s update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode 677s Setting up libkim-api2:armhf (2.3.0-1) ... 677s Setting up liblammps0t64:armhf (20240207+dfsg-1.1build3) ... 677s Setting up mpi-default-dev (1.15) ... 677s Setting up liblammps-dev (20240207+dfsg-1.1build3) ... 677s Setting up python3-lammps (20240207+dfsg-1.1build3) ... 677s Setting up autopkgtest-satdep (0) ... 677s Processing triggers for man-db (2.12.0-4build1) ... 678s Processing triggers for install-info (7.1-3build2) ... 678s Processing triggers for libc-bin (2.39-0ubuntu8) ... 700s (Reading database ... 65256 files and directories currently installed.) 700s Removing autopkgtest-satdep (0) ... 723s autopkgtest [17:28:46]: test command1: cd python/examples; python3 demo.py 723s autopkgtest [17:28:46]: test command1: [----------------------- 725s LAMMPS (7 Feb 2024 - Update 1) 725s 725s Python output: 725s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 725s Temperature from compute = 0.7683848148006243 725s Energy from equal-style variable = -5.774392400140558 725s Velocity component from atom-style variable = -0.16696430269966717 725s Volume from get_thermo = 4738.213693437576 725s Natoms from get_natoms = 4000 725s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 725s Changed x[0][0] via scatter_atoms = 17.651271530416228 725s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 725s using 1 OpenMP thread(s) per MPI task 725s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 725s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 725s 1 by 1 by 1 MPI processor grid 725s Created 4000 atoms 725s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 725s create_atoms CPU = 0.001 seconds 725s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 725s Neighbor list info ... 725s update: every = 20 steps, delay = 0 steps, check = no 725s max neighbors/atom: 2000, page size: 100000 725s master list distance cutoff = 2.8 725s ghost atom cutoff = 2.8 725s binsize = 1.4, bins = 12 12 12 725s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 725s (1) pair lj/cut, perpetual 725s attributes: half, newton on 725s pair build: half/bin/atomonly/newton 725s stencil: half/bin/3d 725s bin: standard 725s Setting up Verlet run ... 725s Unit style : lj 725s Current step : 0 725s Time step : 0.005 725s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes 725s Step Temp E_pair E_mol TotEng Press 725s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 725s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 725s Loop time of 0.262993 on 1 procs for 100 steps with 4000 atoms 725s 725s Performance: 164263.187 tau/day, 380.239 timesteps/s, 1.521 Matom-step/s 725s 95.6% CPU use with 1 MPI tasks x 1 OpenMP threads 725s 725s MPI task timing breakdown: 725s Section | min time | avg time | max time |%varavg| %total 725s --------------------------------------------------------------- 725s Pair | 0.22116 | 0.22116 | 0.22116 | 0.0 | 84.09 725s Neigh | 0.030347 | 0.030347 | 0.030347 | 0.0 | 11.54 725s Comm | 0.0054699 | 0.0054699 | 0.0054699 | 0.0 | 2.08 725s Output | 7.6201e-05 | 7.6201e-05 | 7.6201e-05 | 0.0 | 0.03 725s Modify | 0.0040293 | 0.0040293 | 0.0040293 | 0.0 | 1.53 725s Other | | 0.001906 | | | 0.72 725s 725s Nlocal: 4000 ave 4000 max 4000 min 725s Histogram: 1 0 0 0 0 0 0 0 0 0 725s Nghost: 5758 ave 5758 max 5758 min 725s Histogram: 1 0 0 0 0 0 0 0 0 0 725s Neighs: 150488 ave 150488 max 150488 min 725s Histogram: 1 0 0 0 0 0 0 0 0 0 725s 725s Total # of neighbors = 150488 725s Ave neighs/atom = 37.622 725s Neighbor list builds = 5 725s Dangerous builds not checked 725s Total wall time: 0:00:00 726s autopkgtest [17:28:49]: test command1: -----------------------] 729s command1 PASS 729s autopkgtest [17:28:52]: test command1: - - - - - - - - - - results - - - - - - - - - - 733s autopkgtest [17:28:56]: @@@@@@@@@@@@@@@@@@@@ summary 733s crack PASS 733s dipole PASS 733s ellipse PASS 733s flow PASS 733s friction PASS 733s hugo PASS 733s command1 PASS