0s autopkgtest [18:39:53]: starting date and time: 2024-03-24 18:39:53+0000 0s autopkgtest [18:39:53]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [18:39:53]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.79qskzy0/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade bbmap --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openjdk-23/23~15ea-1 openjdk-22/22+36-1' -- lxd -r lxd-armhf-10.145.243.5 lxd-armhf-10.145.243.5:autopkgtest/ubuntu/noble/armhf 25s autopkgtest [18:40:18]: testbed dpkg architecture: armhf 26s autopkgtest [18:40:19]: testbed apt version: 2.7.12 26s autopkgtest [18:40:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 35s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 35s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.3 kB] 35s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 35s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 35s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [672 kB] 35s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B] 35s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B] 35s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B] 35s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4099 kB] 35s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B] 35s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [48.7 kB] 35s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B] 38s Fetched 9494 kB in 2s (4310 kB/s) 38s Reading package lists... 47s tee: /proc/self/fd/2: Permission denied 69s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 69s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 69s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 69s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 70s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 72s The following packages were automatically installed and are no longer required: 72s linux-headers-6.8.0-11 python3-distutils python3-lib2to3 72s Use 'apt autoremove' to remove them. 72s The following packages will be REMOVED: 72s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 72s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 72s libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2 72s libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0 72s libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic 72s The following NEW packages will be installed: 72s libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64 72s libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 72s libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64 72s libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 72s libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64 72s libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20 72s linux-headers-6.8.0-20-generic xdg-user-dirs 72s The following packages have been kept back: 72s multipath-tools 72s The following packages will be upgraded: 72s apparmor apt apt-utils bind9-dnsutils bind9-host bind9-libs binutils 72s binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils bsdutils 72s btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon 72s dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base 72s dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp 72s fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 72s gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 72s groff-base ibverbs-providers inetutils-telnet info initramfs-tools 72s initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd 72s kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils 72s libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 72s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 72s libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libcap-ng0 libcom-err2 72s libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3 libdebconfclient0 72s libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7 libexpat1 libfdisk1 72s libfido2-1 libftdi1-2 libfwupd2 libgcc-s1 libgirepository-1.0-1 72s libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0 libgusb2 libibverbs1 72s libjcat1 libjq1 libjson-glib-1.0-0 libjson-glib-1.0-common libk5crypto3 72s libkmod2 libkrb5-3 libkrb5support0 libldap-common libldap2 72s liblocale-gettext-perl liblzma5 libmagic-mgc libmbim-glib4 libmbim-proxy 72s libmm-glib0 libmount1 libnghttp2-14 libnsl2 libnss-systemd libpam-modules 72s libpam-modules-bin libpam-runtime libpam-systemd libpam0g libplymouth5 72s libpolkit-agent-1-0 libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 72s libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib 72s libpython3.12-minimal libpython3.12-stdlib libqmi-glib5 libqmi-proxy 72s libqrtr-glib0 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db 72s libseccomp2 libselinux1 libsemanage-common libsemanage2 libsframe1 libslang2 72s libsmartcols1 libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared 72s libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtirpc-common 72s libudev1 libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 72s libxmuu1 linux-headers-generic logsave lshw lsof man-db mount mtr-tiny 72s netplan-generator netplan.io openssh-client openssh-server 72s openssh-sftp-server openssl parted perl perl-base perl-modules-5.38 72s pinentry-curses plymouth plymouth-theme-ubuntu-text procps psmisc 72s python-apt-common python3 python3-apt python3-cryptography python3-dbus 72s python3-distutils python3-gdbm python3-gi python3-lib2to3 python3-minimal 72s python3-netplan python3-pkg-resources python3-pyrsistent python3-setuptools 72s python3-typing-extensions python3-yaml python3.11 python3.11-minimal 72s python3.12 python3.12-minimal readline-common rsync rsyslog shared-mime-info 72s sudo systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd 72s tcpdump telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 72s usb.ids util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g 72s 234 upgraded, 32 newly installed, 30 to remove and 1 not upgraded. 72s Need to get 100 MB of archives. 72s After this operation, 85.0 MB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB] 72s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB] 72s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-6ubuntu1 [119 kB] 72s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-6ubuntu1 [320 kB] 72s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-6ubuntu1 [31.5 kB] 72s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-6ubuntu1 [78.6 kB] 72s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB] 72s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB] 72s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB] 72s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB] 72s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB] 72s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB] 72s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB] 72s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB] 72s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB] 72s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB] 72s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB] 72s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 73s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B] 73s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB] 73s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB] 73s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB] 73s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB] 73s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu8 [296 kB] 73s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu8 [219 kB] 73s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB] 73s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB] 73s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB] 73s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu2 [137 kB] 73s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB] 73s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB] 73s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB] 73s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB] 73s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB] 73s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB] 73s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB] 73s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB] 73s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB] 73s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB] 73s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 74s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB] 74s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B] 74s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB] 74s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB] 74s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB] 74s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB] 74s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB] 74s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB] 74s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB] 74s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB] 74s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB] 74s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB] 74s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 74s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B] 74s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB] 74s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB] 74s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB] 74s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB] 74s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB] 74s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 74s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB] 74s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB] 74s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB] 74s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB] 74s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB] 74s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB] 74s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB] 74s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB] 75s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB] 75s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB] 75s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB] 75s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB] 75s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB] 75s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB] 75s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB] 75s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB] 75s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB] 75s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB] 75s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB] 75s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB] 75s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB] 75s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB] 75s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB] 75s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB] 75s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB] 75s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB] 75s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB] 75s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B] 75s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 75s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB] 75s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu1.1 [17.1 kB] 75s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB] 75s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB] 75s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B] 75s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB] 75s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB] 75s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB] 75s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB] 75s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB] 75s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB] 75s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB] 75s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB] 76s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu8 [290 kB] 76s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB] 76s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB] 76s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB] 76s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB] 76s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB] 76s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB] 76s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB] 76s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB] 76s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB] 76s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB] 76s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 76s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B] 76s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB] 76s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB] 76s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB] 76s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB] 76s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B] 76s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB] 76s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB] 76s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB] 76s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-2 [123 kB] 76s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB] 76s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-2 [4350 kB] 76s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB] 76s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB] 76s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB] 76s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.1 [19.4 kB] 76s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.1 [216 kB] 76s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB] 76s Get:133 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B] 76s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB] 76s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB] 76s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB] 76s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB] 76s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB] 76s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB] 76s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4 [129 kB] 76s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB] 76s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB] 76s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB] 76s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB] 76s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB] 76s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.7 [162 kB] 76s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB] 76s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB] 76s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.7 [19.8 kB] 76s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 76s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 76s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB] 76s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB] 76s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB] 76s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B] 76s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB] 77s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB] 77s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB] 77s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4 [56.4 kB] 77s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB] 77s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB] 77s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 77s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB] 77s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB] 77s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB] 77s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB] 77s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB] 77s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB] 77s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB] 77s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B] 77s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB] 77s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB] 77s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB] 77s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB] 77s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B] 77s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB] 77s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB] 77s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB] 77s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB] 77s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB] 77s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB] 77s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B] 77s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB] 77s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB] 77s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB] 77s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B] 77s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB] 77s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 77s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB] 77s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB] 77s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB] 77s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB] 77s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB] 77s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB] 77s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB] 77s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB] 77s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB] 77s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB] 77s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libproc2-0 armhf 2:4.0.4-4ubuntu2 [49.0 kB] 77s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf procps armhf 2:4.0.4-4ubuntu2 [700 kB] 77s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB] 77s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB] 77s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB] 77s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB] 78s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB] 78s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB] 78s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB] 78s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB] 78s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB] 78s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB] 78s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB] 78s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB] 78s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB] 78s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB] 78s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB] 78s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB] 78s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-21ubuntu1 [48.3 kB] 78s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB] 78s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB] 78s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB] 78s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] 78s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 78s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB] 78s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsyslog armhf 8.2312.0-3ubuntu7 [460 kB] 78s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu6 [665 kB] 78s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu6 [385 kB] 78s Get:227 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB] 78s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu6 [62.5 kB] 78s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB] 78s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B] 78s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB] 78s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB] 78s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B] 78s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB] 78s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB] 78s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B] 78s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB] 78s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB] 78s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B] 78s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB] 78s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB] 78s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB] 78s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB] 78s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB] 78s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB] 78s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B] 78s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB] 78s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB] 78s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB] 78s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB] 78s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB] 78s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB] 78s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 78s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB] 78s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB] 78s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB] 78s Get:257 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB] 78s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB] 78s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB] 78s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 78s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB] 79s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 79s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 79s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB] 79s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB] 79s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB] 79s Preconfiguring packages ... 80s Fetched 100 MB in 7s (14.6 MB/s) 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58619 files and directories currently installed.) 80s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ... 80s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 80s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 80s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58609 files and directories currently installed.) 81s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu2_armhf.deb ... 81s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ... 81s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ... 81s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 81s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ... 81s Unpacking libsystemd-shared:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 81s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ... 81s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 81s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ... 81s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 82s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ... 82s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 82s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ... 82s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 82s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_armhf.deb ... 82s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 82s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ... 82s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 82s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ... 82s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 82s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ... 82s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 82s Selecting previously unselected package linux-headers-6.8.0-20. 82s Preparing to unpack .../11-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 82s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 85s Selecting previously unselected package linux-headers-6.8.0-20-generic. 86s Preparing to unpack .../12-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ... 86s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 87s Preparing to unpack .../13-linux-headers-generic_6.8.0-20.20+1_armhf.deb ... 87s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89772 files and directories currently installed.) 87s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ... 87s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested: 87s systemd depends on libssl3 (>= 3.0.0). 87s libssh-4:armhf depends on libssl3 (>= 3.0.0). 87s libsasl2-modules:armhf depends on libssl3 (>= 3.0.0). 87s libsasl2-2:armhf depends on libssl3 (>= 3.0.0). 87s libpython3.12-minimal:armhf depends on libssl3 (>= 3.0.0). 87s libpython3.11-minimal:armhf depends on libssl3 (>= 3.0.0). 87s libnvme1 depends on libssl3 (>= 3.0.0). 87s libfido2-1:armhf depends on libssl3 (>= 3.0.0). 87s libcryptsetup12:armhf depends on libssl3 (>= 3.0.0). 87s dhcpcd-base depends on libssl3 (>= 3.0.0). 87s bind9-libs:armhf depends on libssl3 (>= 3.0.0). 87s 87s Removing libssl3:armhf (3.0.10-1ubuntu4) ... 87s Selecting previously unselected package libssl3t64:armhf. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 87s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ... 87s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ... 88s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 88s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ... 88s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 88s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ... 88s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 88s Setting up libudev1:armhf (255.4-1ubuntu5) ... 88s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78635 files and directories currently installed.) 90s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_armhf.deb ... 90s Unpacking libpam-modules:armhf (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 90s Setting up libpam-modules:armhf (1.5.3-5ubuntu3) ... 90s Installing new version of config file /etc/security/namespace.init ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 90s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ... 90s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 91s Setting up libpam-runtime (1.5.3-5ubuntu3) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 91s Preparing to unpack .../dbus-user-session_1.14.10-4ubuntu2_armhf.deb ... 91s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 91s Preparing to unpack .../libapparmor1_4.0.0-beta3-0ubuntu2_armhf.deb ... 91s Unpacking libapparmor1:armhf (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 91s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ... 91s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 91s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 91s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ... 91s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 91s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 91s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ... 91s Unpacking libstdc++6:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 91s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 91s Preparing to unpack .../0-libexpat1_2.6.1-2_armhf.deb ... 91s Unpacking libexpat1:armhf (2.6.1-2) over (2.6.0-1) ... 91s Preparing to unpack .../1-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 91s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 91s Preparing to unpack .../2-dbus-bin_1.14.10-4ubuntu2_armhf.deb ... 91s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 91s Preparing to unpack .../3-dbus_1.14.10-4ubuntu2_armhf.deb ... 91s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 91s Preparing to unpack .../4-dbus-daemon_1.14.10-4ubuntu2_armhf.deb ... 91s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 91s Preparing to unpack .../5-libdbus-1-3_1.14.10-4ubuntu2_armhf.deb ... 91s Unpacking libdbus-1-3:armhf (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 91s Preparing to unpack .../6-libmount1_2.39.3-9ubuntu2_armhf.deb ... 91s Unpacking libmount1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 91s Setting up libmount1:armhf (2.39.3-9ubuntu2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 91s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_armhf.deb ... 91s Unpacking libseccomp2:armhf (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ... 91s Setting up libseccomp2:armhf (2.5.5-1ubuntu2) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 91s Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_armhf.deb ... 91s Unpacking libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 92s Preparing to unpack .../libuuid1_2.39.3-9ubuntu2_armhf.deb ... 92s Unpacking libuuid1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 92s Setting up libuuid1:armhf (2.39.3-9ubuntu2) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 92s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ... 92s Unpacking libcryptsetup12:armhf (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 92s Preparing to unpack .../1-libfdisk1_2.39.3-9ubuntu2_armhf.deb ... 92s Unpacking libfdisk1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 92s Preparing to unpack .../2-mount_2.39.3-9ubuntu2_armhf.deb ... 92s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 92s Preparing to unpack .../3-libblockdev-utils3_3.1.0-1build1_armhf.deb ... 92s Unpacking libblockdev-utils3:armhf (3.1.0-1build1) over (3.1.0-1) ... 92s Preparing to unpack .../4-libvolume-key1_0.3.12-7build1_armhf.deb ... 92s Unpacking libvolume-key1:armhf (0.3.12-7build1) over (0.3.12-5build2) ... 92s Preparing to unpack .../5-libjcat1_0.2.0-2build2_armhf.deb ... 92s Unpacking libjcat1:armhf (0.2.0-2build2) over (0.2.0-2) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78633 files and directories currently installed.) 92s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 92s Preparing to unpack .../parted_3.6-3.1build2_armhf.deb ... 92s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 92s Removing libparted2:armhf (3.6-3) ... 92s Selecting previously unselected package libparted2t64:armhf. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78621 files and directories currently installed.) 92s Preparing to unpack .../00-libparted2t64_3.6-3.1build2_armhf.deb ... 92s Unpacking libparted2t64:armhf (3.6-3.1build2) ... 92s Preparing to unpack .../01-python3.12_3.12.2-4build3_armhf.deb ... 92s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 92s Preparing to unpack .../02-python3.12-minimal_3.12.2-4build3_armhf.deb ... 92s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 92s Preparing to unpack .../03-libpython3.12-stdlib_3.12.2-4build3_armhf.deb ... 92s Unpacking libpython3.12-stdlib:armhf (3.12.2-4build3) over (3.12.2-1) ... 92s Preparing to unpack .../04-libpython3.12-minimal_3.12.2-4build3_armhf.deb ... 92s Unpacking libpython3.12-minimal:armhf (3.12.2-4build3) over (3.12.2-1) ... 93s Preparing to unpack .../05-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 93s Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 93s Preparing to unpack .../06-python3.11_3.11.8-1build4_armhf.deb ... 93s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 93s Preparing to unpack .../07-python3.11-minimal_3.11.8-1build4_armhf.deb ... 93s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 93s Preparing to unpack .../08-libpython3.11-stdlib_3.11.8-1build4_armhf.deb ... 93s Unpacking libpython3.11-stdlib:armhf (3.11.8-1build4) over (3.11.8-1) ... 93s Preparing to unpack .../09-libpython3.11-minimal_3.11.8-1build4_armhf.deb ... 93s Unpacking libpython3.11-minimal:armhf (3.11.8-1build4) over (3.11.8-1) ... 94s Preparing to unpack .../10-libsqlite3-0_3.45.1-1ubuntu1_armhf.deb ... 94s Unpacking libsqlite3-0:armhf (3.45.1-1ubuntu1) over (3.45.1-1) ... 94s Preparing to unpack .../11-libtext-iconv-perl_1.7-8build2_armhf.deb ... 94s Unpacking libtext-iconv-perl:armhf (1.7-8build2) over (1.7-8build1) ... 94s Preparing to unpack .../12-libtext-charwidth-perl_0.04-11build2_armhf.deb ... 94s Unpacking libtext-charwidth-perl:armhf (0.04-11build2) over (0.04-11build1) ... 94s Preparing to unpack .../13-perl-modules-5.38_5.38.2-3.2_all.deb ... 94s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 95s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested: 95s perl depends on libperl5.38 (= 5.38.2-3). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78624 files and directories currently installed.) 95s Removing libperl5.38:armhf (5.38.2-3) ... 95s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested: 95s iproute2 depends on libdb5.3. 95s apt-utils depends on libdb5.3. 95s 95s Removing libdb5.3:armhf (5.3.28+dfsg2-4) ... 95s Selecting previously unselected package libdb5.3t64:armhf. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78099 files and directories currently installed.) 95s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ... 95s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-6) ... 95s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_armhf.deb ... 95s Unpacking python3-gdbm:armhf (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 95s Preparing to unpack .../man-db_2.12.0-3build4_armhf.deb ... 95s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78105 files and directories currently installed.) 95s Removing libgdbm-compat4:armhf (1.23-5) ... 95s Removing libgdbm6:armhf (1.23-5) ... 95s Selecting previously unselected package libgdbm6t64:armhf. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78095 files and directories currently installed.) 95s Preparing to unpack .../libgdbm6t64_1.23-5.1_armhf.deb ... 95s Unpacking libgdbm6t64:armhf (1.23-5.1) ... 95s Selecting previously unselected package libgdbm-compat4t64:armhf. 95s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_armhf.deb ... 95s Unpacking libgdbm-compat4t64:armhf (1.23-5.1) ... 95s Selecting previously unselected package libperl5.38t64:armhf. 95s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_armhf.deb ... 95s Unpacking libperl5.38t64:armhf (5.38.2-3.2) ... 95s Preparing to unpack .../perl_5.38.2-3.2_armhf.deb ... 95s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 95s Preparing to unpack .../perl-base_5.38.2-3.2_armhf.deb ... 95s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 96s Setting up perl-base (5.38.2-3.2) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78626 files and directories currently installed.) 96s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_armhf.deb ... 96s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ... 96s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested: 96s libhogweed6:armhf depends on libnettle8. 96s libgnutls30:armhf depends on libnettle8 (>= 3.9~). 96s libcurl3-gnutls:armhf depends on libnettle8. 96s libarchive13:armhf depends on libnettle8. 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78626 files and directories currently installed.) 96s Removing libnettle8:armhf (3.9.1-2) ... 96s Selecting previously unselected package libnettle8t64:armhf. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78619 files and directories currently installed.) 96s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ... 96s Unpacking libnettle8t64:armhf (3.9.1-2.2) ... 96s Setting up libnettle8t64:armhf (3.9.1-2.2) ... 96s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested: 96s libgnutls30:armhf depends on libhogweed6 (>= 3.6). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78627 files and directories currently installed.) 96s Removing libhogweed6:armhf (3.9.1-2) ... 96s Selecting previously unselected package libhogweed6t64:armhf. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 96s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ... 96s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ... 96s Setting up libhogweed6t64:armhf (3.9.1-2.2) ... 96s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested: 96s libldap2:armhf depends on libgnutls30 (>= 3.8.2). 96s libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2). 96s fwupd depends on libgnutls30 (>= 3.7.3). 96s dirmngr depends on libgnutls30 (>= 3.8.1). 96s apt depends on libgnutls30 (>= 3.8.1). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78628 files and directories currently installed.) 96s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ... 96s Selecting previously unselected package libgnutls30t64:armhf. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78619 files and directories currently installed.) 96s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ... 96s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ... 96s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ... 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 96s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ... 96s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 96s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested: 96s libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0). 96s fwupd depends on libcurl3-gnutls (>= 7.63.0). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 96s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ... 96s Selecting previously unselected package libcurl3t64-gnutls:armhf. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78640 files and directories currently installed.) 96s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu8_armhf.deb ... 96s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ... 96s Preparing to unpack .../01-shared-mime-info_2.4-1build1_armhf.deb ... 96s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 97s Preparing to unpack .../02-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ... 97s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ... 97s Preparing to unpack .../03-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ... 97s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 97s Preparing to unpack .../04-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ... 97s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ... 97s Preparing to unpack .../05-python3-gi_3.47.0-3build1_armhf.deb ... 97s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 97s Preparing to unpack .../06-python3-dbus_1.3.2-5build2_armhf.deb ... 97s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 97s Selecting previously unselected package libnetplan1:armhf. 97s Preparing to unpack .../07-libnetplan1_1.0-1_armhf.deb ... 97s Unpacking libnetplan1:armhf (1.0-1) ... 97s Preparing to unpack .../08-python3-netplan_1.0-1_armhf.deb ... 97s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 97s Preparing to unpack .../09-netplan-generator_1.0-1_armhf.deb ... 97s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 97s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 97s Preparing to unpack .../10-initramfs-tools-bin_0.142ubuntu23_armhf.deb ... 97s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 97s Preparing to unpack .../11-initramfs-tools-core_0.142ubuntu23_all.deb ... 97s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 98s Preparing to unpack .../12-initramfs-tools_0.142ubuntu23_all.deb ... 98s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 98s Preparing to unpack .../13-netplan.io_1.0-1_armhf.deb ... 98s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 98s Preparing to unpack .../14-libxmlb2_0.3.15-1build1_armhf.deb ... 98s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ... 98s Preparing to unpack .../15-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ... 98s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 98s Preparing to unpack .../16-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ... 98s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ... 98s Preparing to unpack .../17-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ... 98s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 98s Preparing to unpack .../18-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ... 98s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ... 98s Preparing to unpack .../19-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ... 98s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78651 files and directories currently installed.) 98s Removing libnetplan0:armhf (0.107.1-3) ... 98s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested: 98s libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0). 98s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 98s libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56). 98s libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3). 98s libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3). 98s libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0). 98s libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0). 98s libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2). 98s fwupd depends on libglib2.0-0 (>= 2.79.0). 98s bolt depends on libglib2.0-0 (>= 2.56.0). 98s 98s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ... 98s Selecting previously unselected package libglib2.0-0t64:armhf. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78622 files and directories currently installed.) 98s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ... 98s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 98s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm' 98s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ... 98s Preparing to unpack .../libfwupd2_1.9.15-2_armhf.deb ... 98s Unpacking libfwupd2:armhf (1.9.15-2) over (1.9.14-1) ... 98s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested: 98s fwupd depends on libarchive13 (>= 3.2.1). 98s 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 98s Removing libarchive13:armhf (3.7.2-1ubuntu2) ... 98s Selecting previously unselected package libarchive13t64:armhf. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78641 files and directories currently installed.) 98s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ... 98s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ... 98s Preparing to unpack .../fwupd_1.9.15-2_armhf.deb ... 99s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ... 99s Preparing to unpack .../apt-utils_2.7.14_armhf.deb ... 99s Unpacking apt-utils (2.7.14) over (2.7.12) ... 99s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested: 99s ubuntu-pro-client depends on libapt-pkg6.0 (>= 1.9~). 99s python3-apt depends on libapt-pkg6.0 (>= 2.7.11). 99s apt depends on libapt-pkg6.0 (>= 2.7.12). 99s 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78648 files and directories currently installed.) 100s Removing libapt-pkg6.0:armhf (2.7.12) ... 100s Selecting previously unselected package libapt-pkg6.0t64:armhf. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78599 files and directories currently installed.) 100s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ... 100s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ... 100s Setting up libapt-pkg6.0t64:armhf (2.7.14) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 100s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ... 100s Unpacking apt (2.7.14) over (2.7.12) ... 100s Setting up apt (2.7.14) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 101s Preparing to unpack .../ubuntu-pro-client-l10n_31.2.1_armhf.deb ... 101s Unpacking ubuntu-pro-client-l10n (31.2.1) over (31.1) ... 101s Preparing to unpack .../ubuntu-pro-client_31.2.1_armhf.deb ... 101s Unpacking ubuntu-pro-client (31.2.1) over (31.1) ... 102s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ... 102s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 102s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested: 102s gpgv depends on libnpth0 (>= 0.90). 102s gpgsm depends on libnpth0 (>= 0.90). 102s gpg-agent depends on libnpth0 (>= 0.90). 102s gpg depends on libnpth0 (>= 0.90). 102s dirmngr depends on libnpth0 (>= 0.90). 102s 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78649 files and directories currently installed.) 102s Removing libnpth0:armhf (1.6-3build2) ... 102s Selecting previously unselected package libnpth0t64:armhf. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78644 files and directories currently installed.) 102s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ... 102s Unpacking libnpth0t64:armhf (1.6-3.1) ... 102s Setting up libnpth0t64:armhf (1.6-3.1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 102s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ... 102s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 102s Setting up gpgv (2.4.4-2ubuntu15) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 102s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ... 102s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 102s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ... 102s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 103s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ... 103s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 103s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ... 103s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 103s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ... 103s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 103s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested: 103s gpgconf depends on libreadline8 (>= 6.0). 103s gawk depends on libreadline8 (>= 6.0). 103s fdisk depends on libreadline8 (>= 6.0). 103s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78650 files and directories currently installed.) 103s Removing libreadline8:armhf (8.2-3) ... 103s Selecting previously unselected package libreadline8t64:armhf. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78638 files and directories currently installed.) 103s Preparing to unpack .../libreadline8t64_8.2-4_armhf.deb ... 104s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' 104s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' 104s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' 104s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' 104s Unpacking libreadline8t64:armhf (8.2-4) ... 104s Setting up libreadline8t64:armhf (8.2-4) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78658 files and directories currently installed.) 104s Preparing to unpack .../00-gawk_1%3a5.2.1-2build2_armhf.deb ... 104s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 104s Preparing to unpack .../01-fdisk_2.39.3-9ubuntu2_armhf.deb ... 104s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 104s Preparing to unpack .../02-gpgconf_2.4.4-2ubuntu15_armhf.deb ... 104s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 104s Preparing to unpack .../03-dirmngr_2.4.4-2ubuntu15_armhf.deb ... 104s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 105s Preparing to unpack .../04-gnupg_2.4.4-2ubuntu15_all.deb ... 105s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 105s Preparing to unpack .../05-python3-apt_2.7.7_armhf.deb ... 105s Unpacking python3-apt (2.7.7) over (2.7.6) ... 105s Preparing to unpack .../06-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ... 105s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 105s Preparing to unpack .../07-python3-yaml_6.0.1-2build1_armhf.deb ... 105s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 105s Preparing to unpack .../08-python-apt-common_2.7.7_all.deb ... 105s Unpacking python-apt-common (2.7.7) over (2.7.6) ... 105s Preparing to unpack .../09-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 105s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 105s Preparing to unpack .../10-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 105s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 105s Preparing to unpack .../11-dpkg_1.22.6ubuntu4_armhf.deb ... 105s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 106s Setting up dpkg (1.22.6ubuntu4) ... 107s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ... 107s Setting up libexpat1:armhf (2.6.1-2) ... 107s Setting up python3.12-minimal (3.12.2-4build3) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 107s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ... 107s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 107s Setting up python3-minimal (3.12.2-0ubuntu1) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 108s Preparing to unpack .../python3_3.12.2-0ubuntu1_armhf.deb ... 108s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 108s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ... 108s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 108s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_armhf.deb ... 108s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 108s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78655 files and directories currently installed.) 108s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ... 108s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 108s Preparing to unpack .../1-groff-base_1.23.0-3build1_armhf.deb ... 108s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 108s Preparing to unpack .../2-readline-common_8.2-4_all.deb ... 108s Unpacking readline-common (8.2-4) over (8.2-3) ... 108s Selecting previously unselected package libgpgme11t64:armhf. 108s Preparing to unpack .../3-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ... 108s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ... 109s Preparing to unpack .../4-libblockdev-crypto3_3.1.0-1build1_armhf.deb ... 109s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ... 109s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 109s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 109s Preparing to unpack .../6-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 109s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 109s Preparing to unpack .../7-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ... 109s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 109s Preparing to unpack .../8-libblockdev-fs3_3.1.0-1build1_armhf.deb ... 109s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ... 109s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 109s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 109s 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78662 files and directories currently installed.) 109s Removing libreiserfscore0 (1:3.6.27-7) ... 109s Selecting previously unselected package libreiserfscore0t64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78657 files and directories currently installed.) 109s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ... 109s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 109s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ... 109s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 109s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested: 109s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 109s 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78663 files and directories currently installed.) 109s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ... 110s Selecting previously unselected package libext2fs2t64:armhf. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78656 files and directories currently installed.) 110s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 110s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64' 110s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 110s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64' 110s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 110s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ... 110s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ... 110s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78672 files and directories currently installed.) 110s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 110s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 110s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ... 110s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ... 110s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ... 110s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ... 110s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ... 110s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78672 files and directories currently installed.) 110s Removing libnvme1 (1.8-2) ... 110s Selecting previously unselected package libnvme1t64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78665 files and directories currently installed.) 110s Preparing to unpack .../0-libnvme1t64_1.8-3_armhf.deb ... 110s Unpacking libnvme1t64 (1.8-3) ... 110s Preparing to unpack .../1-libblockdev-part3_3.1.0-1build1_armhf.deb ... 110s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ... 111s Preparing to unpack .../2-libblockdev-swap3_3.1.0-1build1_armhf.deb ... 111s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ... 111s Preparing to unpack .../3-libblockdev3_3.1.0-1build1_armhf.deb ... 111s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ... 111s Preparing to unpack .../4-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ... 111s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ... 111s Preparing to unpack .../5-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ... 111s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 111s Preparing to unpack .../6-libbpf1_1%3a1.3.0-2build1_armhf.deb ... 111s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ... 111s Preparing to unpack .../7-iproute2_6.1.0-1ubuntu5_armhf.deb ... 111s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 111s Removing libelf1:armhf (0.190-1) ... 111s Selecting previously unselected package libelf1t64:armhf. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78668 files and directories currently installed.) 111s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ... 111s Unpacking libelf1t64:armhf (0.190-1.1build2) ... 111s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 111s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 111s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ... 111s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 111s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ... 111s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78673 files and directories currently installed.) 111s Removing libtirpc3:armhf (1.3.4+ds-1build1) ... 111s Selecting previously unselected package libtirpc3t64:armhf. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78667 files and directories currently installed.) 111s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ... 111s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' 111s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 111s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ... 111s Preparing to unpack .../01-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ... 111s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 112s Preparing to unpack .../02-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ... 112s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ... 112s Preparing to unpack .../03-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 112s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 112s Preparing to unpack .../04-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ... 112s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ... 112s Preparing to unpack .../05-libnghttp2-14_1.59.0-1build1_armhf.deb ... 112s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ... 113s Preparing to unpack .../06-libssh-4_0.10.6-2build1_armhf.deb ... 113s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ... 113s Preparing to unpack .../07-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ... 113s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ... 113s Preparing to unpack .../08-libgusb2_0.4.8-1build1_armhf.deb ... 113s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ... 113s Preparing to unpack .../09-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ... 113s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ... 114s Preparing to unpack .../10-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ... 114s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 114s Preparing to unpack .../11-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 114s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 114s Preparing to unpack .../12-libibverbs1_50.0-2build1_armhf.deb ... 114s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ... 114s Preparing to unpack .../13-libfido2-1_1.14.0-1build1_armhf.deb ... 114s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ... 115s Preparing to unpack .../14-libproc2-0_2%3a4.0.4-4ubuntu2_armhf.deb ... 115s Unpacking libproc2-0:armhf (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 115s Preparing to unpack .../15-procps_2%3a4.0.4-4ubuntu2_armhf.deb ... 115s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 115s Preparing to unpack .../16-coreutils_9.4-3ubuntu3_armhf.deb ... 115s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 115s Setting up coreutils (9.4-3ubuntu3) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78679 files and directories currently installed.) 115s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ... 115s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 115s Setting up util-linux (2.39.3-9ubuntu2) ... 116s fstrim.service is a disabled or a static unit not running, not starting it. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78679 files and directories currently installed.) 116s Removing libatm1:armhf (1:2.5.1-5) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78674 files and directories currently installed.) 116s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ... 116s Unpacking file (1:5.45-3) over (1:5.45-2) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78674 files and directories currently installed.) 116s Removing libmagic1:armhf (1:5.45-2) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78664 files and directories currently installed.) 117s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ... 117s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 117s Selecting previously unselected package libmagic1t64:armhf. 117s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ... 117s Unpacking libmagic1t64:armhf (1:5.45-3) ... 117s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ... 117s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78675 files and directories currently installed.) 117s Removing libpng16-16:armhf (1.6.43-1) ... 117s Selecting previously unselected package libpng16-16t64:armhf. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78665 files and directories currently installed.) 117s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ... 117s Unpacking libpng16-16t64:armhf (1.6.43-3) ... 117s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ... 117s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 117s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ... 117s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 117s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ... 117s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78676 files and directories currently installed.) 117s Removing libuv1:armhf (1.48.0-1) ... 117s Selecting previously unselected package libuv1t64:armhf. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78671 files and directories currently installed.) 117s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ... 117s Unpacking libuv1t64:armhf (1.48.0-1.1) ... 117s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ... 117s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 117s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ... 117s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ... 117s Setting up libdebconfclient0:armhf (0.271ubuntu2) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 117s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 117s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 117s Setting up libsemanage-common (3.5-1build4) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 118s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ... 118s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ... 118s Setting up libsemanage2:armhf (3.5-1build4) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 118s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ... 118s Unpacking install-info (7.1-3build1) over (7.1-3) ... 118s Setting up install-info (7.1-3build1) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78677 files and directories currently installed.) 118s Preparing to unpack .../00-gcc-13-base_13.2.0-21ubuntu1_armhf.deb ... 118s Unpacking gcc-13-base:armhf (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ... 118s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ... 118s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 118s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ... 118s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 119s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_armhf.deb ... 119s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 119s Preparing to unpack .../04-krb5-locales_1.20.1-6ubuntu1_all.deb ... 119s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 119s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 119s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 119s Preparing to unpack .../06-libslang2_2.3.3-3build1_armhf.deb ... 119s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ... 119s Preparing to unpack .../07-rsyslog_8.2312.0-3ubuntu7_armhf.deb ... 119s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ... 120s Preparing to unpack .../08-vim-tiny_2%3a9.1.0016-1ubuntu6_armhf.deb ... 120s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 120s Preparing to unpack .../09-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ... 120s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 120s Selecting previously unselected package xdg-user-dirs. 120s Preparing to unpack .../10-xdg-user-dirs_0.18-1_armhf.deb ... 120s Unpacking xdg-user-dirs (0.18-1) ... 120s Preparing to unpack .../11-xxd_2%3a9.1.0016-1ubuntu6_armhf.deb ... 120s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 121s Preparing to unpack .../12-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ... 123s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 123s Preparing to unpack .../13-ftp_20230507-2build1_all.deb ... 123s Unpacking ftp (20230507-2build1) over (20230507-2) ... 124s Preparing to unpack .../14-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ... 124s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 124s Preparing to unpack .../15-info_7.1-3build1_armhf.deb ... 124s Unpacking info (7.1-3build1) over (7.1-3) ... 124s Preparing to unpack .../16-libxmuu1_2%3a1.1.3-3build1_armhf.deb ... 124s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ... 124s Preparing to unpack .../17-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ... 124s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 124s Preparing to unpack .../18-mtr-tiny_0.95-1.1build1_armhf.deb ... 124s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 125s Preparing to unpack .../19-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ... 125s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 125s Preparing to unpack .../20-plymouth_24.004.60-1ubuntu6_armhf.deb ... 125s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 125s Preparing to unpack .../21-psmisc_23.7-1_armhf.deb ... 125s Unpacking psmisc (23.7-1) over (23.6-2) ... 126s Preparing to unpack .../22-telnet_0.17+2.5-3ubuntu3_all.deb ... 126s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 126s Preparing to unpack .../23-usb.ids_2024.03.18-1_all.deb ... 126s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 126s Preparing to unpack .../24-xz-utils_5.6.0-0.2_armhf.deb ... 126s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 126s Preparing to unpack .../25-libctf0_2.42-4ubuntu1_armhf.deb ... 126s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 126s Preparing to unpack .../26-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ... 126s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 126s Preparing to unpack .../27-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ... 126s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 127s Preparing to unpack .../28-libbinutils_2.42-4ubuntu1_armhf.deb ... 127s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 127s Preparing to unpack .../29-binutils_2.42-4ubuntu1_armhf.deb ... 127s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 127s Preparing to unpack .../30-binutils-common_2.42-4ubuntu1_armhf.deb ... 127s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 128s Preparing to unpack .../31-libsframe1_2.42-4ubuntu1_armhf.deb ... 128s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 128s Preparing to unpack .../32-bolt_0.9.6-2build1_armhf.deb ... 128s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 128s Preparing to unpack .../33-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ... 128s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 128s Preparing to unpack .../34-dpkg-dev_1.22.6ubuntu4_all.deb ... 128s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 128s Preparing to unpack .../35-libdpkg-perl_1.22.6ubuntu4_all.deb ... 128s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ... 128s Preparing to unpack .../36-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 128s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 128s Preparing to unpack .../37-ibverbs-providers_50.0-2build1_armhf.deb ... 128s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ... 128s Preparing to unpack .../38-jq_1.7.1-3_armhf.deb ... 128s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 128s Preparing to unpack .../39-libjq1_1.7.1-3_armhf.deb ... 128s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ... 128s Selecting previously unselected package libatm1t64:armhf. 128s Preparing to unpack .../40-libatm1t64_1%3a2.5.1-5.1_armhf.deb ... 128s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ... 128s Preparing to unpack .../41-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ... 128s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 128s Preparing to unpack .../42-libftdi1-2_1.5-6build4_armhf.deb ... 128s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ... 128s Preparing to unpack .../43-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 128s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 128s Preparing to unpack .../44-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ... 128s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 128s Preparing to unpack .../45-python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 129s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 129s Preparing to unpack .../46-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 129s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 129s Preparing to unpack .../47-python3-pyrsistent_0.20.0-1build1_armhf.deb ... 129s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ... 129s Preparing to unpack .../48-python3-typing-extensions_4.10.0-1_all.deb ... 129s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 129s Preparing to unpack .../49-kpartx_0.9.4-5ubuntu6_armhf.deb ... 129s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 129s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 129s Setting up libtext-iconv-perl:armhf (1.7-8build2) ... 129s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ... 129s Setting up libibverbs1:armhf (50.0-2build1) ... 129s Setting up systemd-sysv (255.4-1ubuntu5) ... 129s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ... 129s Setting up libatm1t64:armhf (1:2.5.1-5.1) ... 129s Setting up libgdbm6t64:armhf (1.23-5.1) ... 129s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 129s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ... 129s Setting up xdg-user-dirs (0.18-1) ... 129s Setting up ibverbs-providers:armhf (50.0-2build1) ... 129s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 129s Setting up libmagic-mgc (1:5.45-3) ... 129s Setting up gawk (1:5.2.1-2build2) ... 129s Setting up psmisc (23.7-1) ... 129s Setting up libjq1:armhf (1.7.1-3) ... 129s Setting up libtirpc-common (1.3.4+ds-1.1) ... 129s Setting up libbrotli1:armhf (1.1.0-2build1) ... 129s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ... 129s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ... 129s Setting up libuv1t64:armhf (1.48.0-1.1) ... 129s Setting up libmagic1t64:armhf (1:5.45-3) ... 129s Setting up rsyslog (8.2312.0-3ubuntu7) ... 129s info: The user `syslog' is already a member of `adm'. 130s apparmor_parser: Unable to replace "rsyslogd". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 130s 131s Setting up binutils-common:armhf (2.42-4ubuntu1) ... 131s Setting up libpsl5t64:armhf (0.21.2-1.1) ... 131s Setting up libnghttp2-14:armhf (1.59.0-1build1) ... 131s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 131s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ... 131s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ... 131s Setting up krb5-locales (1.20.1-6ubuntu1) ... 131s Setting up file (1:5.45-3) ... 131s Setting up kmod (31+20240202-2ubuntu4) ... 131s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 131s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 131s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ... 131s Setting up xxd (2:9.1.0016-1ubuntu6) ... 131s Setting up libsframe1:armhf (2.42-4ubuntu1) ... 131s Setting up libelf1t64:armhf (0.190-1.1build2) ... 131s Setting up libkrb5support0:armhf (1.20.1-6ubuntu1) ... 131s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 131s Setting up eject (2.39.3-9ubuntu2) ... 131s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 131s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 131s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 131s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 131s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 131s Installing new version of config file /etc/apparmor.d/code ... 131s Installing new version of config file /etc/apparmor.d/firefox ... 131s apparmor_parser: Unable to replace "lsb_release". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 131s 131s apparmor_parser: Unable to replace "kmod". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 131s 131s apparmor_parser: Unable to replace "nvidia_modprobe". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 131s 132s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory 132s Reloading AppArmor profiles 132s /sbin/apparmor_parser: Unable to replace "1password". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "Discord". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "MongoDB Compass". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "brave". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "buildah". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "busybox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "cam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "ch-checkns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "ch-run". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "chrome". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "vscode". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "crun". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "devhelp". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "element-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "epiphany". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "evolution". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "firefox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "flatpak". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "geary". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "github-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "goldendict". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "ipa_verify". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "kchmviewer". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "keybase". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "libcamerify". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lc-compliance". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "linux-sandbox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "loupe". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-attach". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-create". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-destroy". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-execute". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-stop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-unshare". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "mmdebstrap". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "msedge". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "notepadqq". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "obsidian". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "nautilus". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "opam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "opera". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "pageedit". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "privacybrowser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "podman". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "qcam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "polypane". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "qutebrowser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "rootlesskit". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "qmapshack". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "runc". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-abort". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-adduser". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-apt". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-clean". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-hold". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "rssguard". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-shell". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-unhold". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "rpm". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "plasmashell". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "lsb_release". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-update". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "signal-desktop". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "scide". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "slirp4netns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "stress-ng". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "surfshark". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "steam". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "systemd-coredump". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "trinity". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "thunderbird". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "tup". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "toybox". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "slack". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "userbindmount". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "unprivileged_userns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "kmod". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "virtiofsd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "uwsgi-core". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "vivaldi-bin". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "vpnns". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "vdens". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "wpcom". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "unix-chkpwd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "rsyslogd". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "/usr/bin/man". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s /sbin/apparmor_parser: Unable to replace "tcpdump". /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 132s 132s Error: At least one profile failed to load 132s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ... 132s No schema files found: doing nothing. 132s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 132s Setting up vim-common (2:9.1.0016-1ubuntu6) ... 132s Setting up gcc-13-base:armhf (13.2.0-21ubuntu1) ... 132s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ... 132s Setting up libslang2:armhf (2.3.3-3build1) ... 132s Setting up libnvme1t64 (1.8-3) ... 132s Setting up mtr-tiny (0.95-1.1build1) ... 133s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 133s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ... 133s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ... 133s Setting up xz-utils (5.6.0-0.2) ... 133s Setting up perl-modules-5.38 (5.38.2-3.2) ... 133s Setting up libproc2-0:armhf (2:4.0.4-4ubuntu2) ... 133s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ... 133s Setting up libpng16-16t64:armhf (1.6.43-3) ... 133s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 133s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ... 133s Setting up udev (255.4-1ubuntu5) ... 134s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ... 134s Setting up usb.ids (2024.03.18-1) ... 134s Setting up sudo (1.9.15p5-3ubuntu3) ... 134s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 134s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ... 134s Setting up libk5crypto3:armhf (1.20.1-6ubuntu1) ... 134s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 134s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ... 134s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ... 134s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ... 134s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ... 134s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ... 134s Setting up python-apt-common (2.7.7) ... 134s Setting up mount (2.39.3-9ubuntu2) ... 134s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 134s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 135s uuidd.service is a disabled or a static unit not running, not starting it. 135s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ... 135s Setting up groff-base (1.23.0-3build1) ... 135s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ... 135s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 135s Setting up kpartx (0.9.4-5ubuntu6) ... 135s Setting up jq (1.7.1-3) ... 135s Setting up procps (2:4.0.4-4ubuntu2) ... 135s Setting up gpgconf (2.4.4-2ubuntu15) ... 135s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu2) ... 135s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ... 135s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ... 135s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 135s Setting up libkrb5-3:armhf (1.20.1-6ubuntu1) ... 135s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ... 135s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ... 135s Setting up libperl5.38t64:armhf (5.38.2-3.2) ... 135s Setting up tnftp (20230507-2build1) ... 135s Setting up libbinutils:armhf (2.42-4ubuntu1) ... 135s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 135s Setting up libfido2-1:armhf (1.14.0-1build1) ... 135s Setting up openssl (3.0.13-0ubuntu2) ... 135s Setting up readline-common (8.2-4) ... 135s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ... 135s Setting up libxmuu1:armhf (2:1.1.3-3build1) ... 135s Setting up dbus-bin (1.14.10-4ubuntu2) ... 135s Setting up info (7.1-3build1) ... 135s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ... 135s Setting up gpg (2.4.4-2ubuntu15) ... 135s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ... 135s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ... 135s Setting up libbpf1:armhf (1:1.3.0-2build1) ... 135s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ... 135s Setting up rsync (3.2.7-1build1) ... 136s rsync.service is a disabled or a static unit not running, not starting it. 136s Setting up libudisks2-0:armhf (2.10.1-6) ... 136s Setting up bolt (0.9.6-2build1) ... 137s bolt.service is a disabled or a static unit not running, not starting it. 137s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 137s Setting up initramfs-tools-bin (0.142ubuntu23) ... 137s Setting up libctf0:armhf (2.42-4ubuntu1) ... 137s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 137s Setting up python3.11-minimal (3.11.8-1build4) ... 138s Setting up tcpdump (4.99.4-3ubuntu2) ... 138s apparmor_parser: Unable to replace "tcpdump". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 138s 138s Setting up apt-utils (2.7.14) ... 138s Setting up gpg-agent (2.4.4-2ubuntu15) ... 138s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ... 138s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ... 138s Setting up wget (1.21.4-1ubuntu2) ... 138s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ... 138s Setting up plymouth (24.004.60-1ubuntu6) ... 138s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 139s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 139s Setting up libxmlb2:armhf (0.3.15-1build1) ... 139s Setting up btrfs-progs (6.6.3-1.1build1) ... 139s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ... 139s Setting up python3.12 (3.12.2-4build3) ... 140s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ... 140s Setting up gpgsm (2.4.4-2ubuntu15) ... 140s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 140s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 140s update-initramfs: deferring update (trigger activated) 141s e2scrub_all.service is a disabled or a static unit not running, not starting it. 141s Setting up libparted2t64:armhf (3.6-3.1build2) ... 141s Setting up linux-headers-generic (6.8.0-20.20+1) ... 141s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 141s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 141s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ... 141s Setting up libnetplan1:armhf (1.0-1) ... 141s Setting up man-db (2.12.0-3build4) ... 141s Updating database of manual pages ... 143s apparmor_parser: Unable to replace "/usr/bin/man". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 143s 143s man-db.service is a disabled or a static unit not running, not starting it. 143s Setting up libblockdev3:armhf (3.1.0-1build1) ... 143s Setting up fdisk (2.39.3-9ubuntu2) ... 143s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ... 143s Setting up libblockdev-part3:armhf (3.1.0-1build1) ... 143s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ... 143s Setting up libftdi1-2:armhf (1.5-6build4) ... 143s Setting up perl (5.38.2-3.2) ... 143s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 143s update-initramfs: deferring update (trigger activated) 143s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ... 143s Setting up dbus (1.14.10-4ubuntu2) ... 143s A reboot is required to replace the running dbus-daemon. 143s Please reboot the system when convenient. 143s Setting up shared-mime-info (2.4-1build1) ... 144s Setting up libgssapi-krb5-2:armhf (1.20.1-6ubuntu1) ... 144s Setting up ftp (20230507-2build1) ... 144s Setting up keyboxd (2.4.4-2ubuntu15) ... 144s Setting up libdpkg-perl (1.22.6ubuntu4) ... 144s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ... 144s Setting up libssh-4:armhf (0.10.6-2build1) ... 144s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ... 144s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ... 144s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ... 144s Setting up netplan-generator (1.0-1) ... 144s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 144s Setting up initramfs-tools-core (0.142ubuntu23) ... 144s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ... 144s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ... 144s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ... 144s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ... 144s Setting up systemd-resolved (255.4-1ubuntu5) ... 145s Setting up python3.11 (3.11.8-1build4) ... 146s Setting up telnet (0.17+2.5-3ubuntu3) ... 146s Setting up initramfs-tools (0.142ubuntu23) ... 146s update-initramfs: deferring update (trigger activated) 146s Setting up libcurl4t64:armhf (8.5.0-2ubuntu8) ... 146s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ... 146s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ... 146s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 146s Setting up iproute2 (6.1.0-1ubuntu5) ... 146s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 146s Setting up libgusb2:armhf (0.4.8-1build1) ... 146s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu8) ... 146s Setting up parted (3.6-3.1build2) ... 146s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ... 146s Setting up python3 (3.12.2-0ubuntu1) ... 147s Setting up binutils (2.42-4ubuntu1) ... 147s Setting up libjcat1:armhf (0.2.0-2build2) ... 147s Setting up dpkg-dev (1.22.6ubuntu4) ... 147s Setting up dirmngr (2.4.4-2ubuntu15) ... 147s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 147s Setting up python3-cryptography (41.0.7-4build2) ... 147s Setting up python3-gi (3.47.0-3build1) ... 148s Setting up python3-typing-extensions (4.10.0-1) ... 148s Setting up lsof (4.95.0-1build2) ... 148s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ... 148s Setting up libnsl2:armhf (1.3.0-3build2) ... 148s Setting up gnupg (2.4.4-2ubuntu15) ... 148s Setting up python3-netplan (1.0-1) ... 148s Setting up curl (8.5.0-2ubuntu8) ... 148s Setting up libvolume-key1:armhf (0.3.12-7build1) ... 148s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 148s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 148s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 148s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 149s python3.12: can't get files for byte-compilation 149s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 149s Setting up python3-dbus (1.3.2-5build2) ... 149s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 149s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 149s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 150s Replacing config file /etc/ssh/sshd_config with new version 151s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 153s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ... 153s Setting up python3-gdbm:armhf (3.12.2-3ubuntu1.1) ... 153s Setting up python3-apt (2.7.7) ... 153s Setting up libfwupd2:armhf (1.9.15-2) ... 153s Setting up python3-yaml (6.0.1-2build1) ... 153s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 153s Setting up netplan.io (1.0-1) ... 153s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 153s Setting up ubuntu-pro-client (31.2.1) ... 153s apparmor_parser: Unable to replace "ubuntu_pro_apt_news". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 153s 155s Setting up fwupd (1.9.15-2) ... 156s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 156s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 156s fwupd.service is a disabled or a static unit not running, not starting it. 156s Setting up ubuntu-pro-client-l10n (31.2.1) ... 156s Setting up udisks2 (2.10.1-6) ... 156s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 156s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 156s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 156s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 156s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 156s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 156s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 156s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 156s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 156s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 156s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 156s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 156s Processing triggers for ufw (0.36.2-5) ... 157s Processing triggers for systemd (255.4-1ubuntu5) ... 157s Processing triggers for install-info (7.1-3build1) ... 157s Processing triggers for libc-bin (2.39-0ubuntu6) ... 157s Processing triggers for initramfs-tools (0.142ubuntu23) ... 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s The following packages will be REMOVED: 159s linux-headers-6.8.0-11* python3-distutils* python3-lib2to3* 160s 0 upgraded, 0 newly installed, 3 to remove and 1 not upgraded. 160s After this operation, 86.5 MB disk space will be freed. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78647 files and directories currently installed.) 160s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ... 161s Removing python3-distutils (3.12.2-3ubuntu1.1) ... 161s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ... 163s autopkgtest [18:42:36]: rebooting testbed after setup commands that affected boot 200s autopkgtest [18:43:13]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024 226s autopkgtest [18:43:39]: @@@@@@@@@@@@@@@@@@@@ apt-source bbmap 242s Get:1 http://ftpmaster.internal/ubuntu noble/universe bbmap 39.06+dfsg-1 (dsc) [2286 B] 242s Get:2 http://ftpmaster.internal/ubuntu noble/universe bbmap 39.06+dfsg-1 (tar) [5343 kB] 242s Get:3 http://ftpmaster.internal/ubuntu noble/universe bbmap 39.06+dfsg-1 (diff) [25.4 kB] 242s gpgv: Signature made Fri Nov 24 11:00:29 2023 UTC 242s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 242s gpgv: issuer "emollier@debian.org" 242s gpgv: Can't check signature: No public key 242s dpkg-source: warning: cannot verify inline signature for ./bbmap_39.06+dfsg-1.dsc: no acceptable signature found 243s autopkgtest [18:43:56]: testing package bbmap version 39.06+dfsg-1 244s autopkgtest [18:43:57]: build not needed 247s autopkgtest [18:44:00]: test run-unit-test: preparing testbed 256s Reading package lists... 256s Building dependency tree... 256s Reading state information... 257s Starting pkgProblemResolver with broken count: 0 257s Starting 2 pkgProblemResolver with broken count: 0 257s Done 258s The following additional packages will be installed: 258s bbmap bbmap-jni ca-certificates-java java-common libapache-pom-java 258s libcommons-cli-java libcommons-codec-java libcommons-io-java 258s libcommons-parent-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblog4j1.2-java 258s libmpj-java libpcsclite1 openjdk-17-jre-headless python-biopython-doc 258s Suggested packages: 258s default-jre libcommons-io-java-doc liblcms2-utils liblog4j1.2-java-doc 258s libmail-java pcscd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic 258s fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 258s Recommended packages: 258s pigz libcups2t64 libfontconfig1 libfreetype6 libharfbuzz0b libasound2t64 258s python3-biopython 258s The following NEW packages will be installed: 258s autopkgtest-satdep bbmap bbmap-jni ca-certificates-java java-common 258s libapache-pom-java libcommons-cli-java libcommons-codec-java 258s libcommons-io-java libcommons-parent-java libjpeg-turbo8 libjpeg8 liblcms2-2 258s liblog4j1.2-java libmpj-java libpcsclite1 openjdk-17-jre-headless 258s python-biopython-doc 258s 0 upgraded, 18 newly installed, 0 to remove and 1 not upgraded. 258s Need to get 71.0 MB/71.0 MB of archives. 258s After this operation, 196 MB of additional disk space will be used. 258s Get:1 /tmp/autopkgtest.5bOgD2/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 258s Get:2 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-cli-java all 1.6.0-1 [59.9 kB] 258s Get:3 http://ftpmaster.internal/ubuntu noble/universe armhf libapache-pom-java all 29-2 [5284 B] 258s Get:4 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-parent-java all 56-1 [10.7 kB] 258s Get:5 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-codec-java all 1.16.0-1 [306 kB] 258s Get:6 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-io-java all 2.11.0-2 [297 kB] 258s Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf liblog4j1.2-java all 1.2.17-11 [439 kB] 258s Get:8 http://ftpmaster.internal/ubuntu noble/universe armhf libmpj-java all 0.44+dfsg-4 [443 kB] 258s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates-java all 20240118 [11.6 kB] 258s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf java-common all 0.75+exp1 [6798 B] 258s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf liblcms2-2 armhf 2.14-2 [134 kB] 258s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] 258s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 258s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcsclite1 armhf 2.0.3-1 [21.1 kB] 258s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openjdk-17-jre-headless armhf 17.0.11~7ea-1 [42.0 MB] 260s Get:16 http://ftpmaster.internal/ubuntu noble/universe armhf bbmap all 39.06+dfsg-1 [9768 kB] 260s Get:17 http://ftpmaster.internal/ubuntu noble/universe armhf bbmap-jni armhf 39.06+dfsg-1 [19.3 kB] 260s Get:18 http://ftpmaster.internal/ubuntu noble/universe armhf python-biopython-doc all 1.81+dfsg-3 [17.3 MB] 261s Fetched 71.0 MB in 3s (27.8 MB/s) 261s Selecting previously unselected package libcommons-cli-java. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 261s Preparing to unpack .../00-libcommons-cli-java_1.6.0-1_all.deb ... 261s Unpacking libcommons-cli-java (1.6.0-1) ... 261s Selecting previously unselected package libapache-pom-java. 261s Preparing to unpack .../01-libapache-pom-java_29-2_all.deb ... 261s Unpacking libapache-pom-java (29-2) ... 261s Selecting previously unselected package libcommons-parent-java. 261s Preparing to unpack .../02-libcommons-parent-java_56-1_all.deb ... 261s Unpacking libcommons-parent-java (56-1) ... 261s Selecting previously unselected package libcommons-codec-java. 261s Preparing to unpack .../03-libcommons-codec-java_1.16.0-1_all.deb ... 261s Unpacking libcommons-codec-java (1.16.0-1) ... 261s Selecting previously unselected package libcommons-io-java. 261s Preparing to unpack .../04-libcommons-io-java_2.11.0-2_all.deb ... 261s Unpacking libcommons-io-java (2.11.0-2) ... 261s Selecting previously unselected package liblog4j1.2-java. 261s Preparing to unpack .../05-liblog4j1.2-java_1.2.17-11_all.deb ... 261s Unpacking liblog4j1.2-java (1.2.17-11) ... 261s Selecting previously unselected package libmpj-java. 261s Preparing to unpack .../06-libmpj-java_0.44+dfsg-4_all.deb ... 261s Unpacking libmpj-java (0.44+dfsg-4) ... 261s Selecting previously unselected package ca-certificates-java. 261s Preparing to unpack .../07-ca-certificates-java_20240118_all.deb ... 261s Unpacking ca-certificates-java (20240118) ... 261s Selecting previously unselected package java-common. 261s Preparing to unpack .../08-java-common_0.75+exp1_all.deb ... 261s Unpacking java-common (0.75+exp1) ... 261s Selecting previously unselected package liblcms2-2:armhf. 261s Preparing to unpack .../09-liblcms2-2_2.14-2_armhf.deb ... 261s Unpacking liblcms2-2:armhf (2.14-2) ... 261s Selecting previously unselected package libjpeg-turbo8:armhf. 261s Preparing to unpack .../10-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ... 261s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 261s Selecting previously unselected package libjpeg8:armhf. 261s Preparing to unpack .../11-libjpeg8_8c-2ubuntu11_armhf.deb ... 261s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 261s Selecting previously unselected package libpcsclite1:armhf. 261s Preparing to unpack .../12-libpcsclite1_2.0.3-1_armhf.deb ... 261s Unpacking libpcsclite1:armhf (2.0.3-1) ... 261s Selecting previously unselected package openjdk-17-jre-headless:armhf. 261s Preparing to unpack .../13-openjdk-17-jre-headless_17.0.11~7ea-1_armhf.deb ... 261s Unpacking openjdk-17-jre-headless:armhf (17.0.11~7ea-1) ... 262s Selecting previously unselected package bbmap. 262s Preparing to unpack .../14-bbmap_39.06+dfsg-1_all.deb ... 262s Unpacking bbmap (39.06+dfsg-1) ... 262s Selecting previously unselected package bbmap-jni. 262s Preparing to unpack .../15-bbmap-jni_39.06+dfsg-1_armhf.deb ... 262s Unpacking bbmap-jni (39.06+dfsg-1) ... 262s Selecting previously unselected package python-biopython-doc. 262s Preparing to unpack .../16-python-biopython-doc_1.81+dfsg-3_all.deb ... 262s Unpacking python-biopython-doc (1.81+dfsg-3) ... 263s Selecting previously unselected package autopkgtest-satdep. 263s Preparing to unpack .../17-1-autopkgtest-satdep.deb ... 263s Unpacking autopkgtest-satdep (0) ... 263s Setting up liblcms2-2:armhf (2.14-2) ... 263s Setting up java-common (0.75+exp1) ... 263s Setting up libcommons-cli-java (1.6.0-1) ... 263s Setting up liblog4j1.2-java (1.2.17-11) ... 263s Setting up libapache-pom-java (29-2) ... 263s Setting up libpcsclite1:armhf (2.0.3-1) ... 263s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... 263s Setting up python-biopython-doc (1.81+dfsg-3) ... 263s Setting up bbmap-jni (39.06+dfsg-1) ... 263s Setting up ca-certificates-java (20240118) ... 263s No JRE found. Skipping Java certificates setup. 263s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 263s Setting up libcommons-parent-java (56-1) ... 263s Setting up openjdk-17-jre-headless:armhf (17.0.11~7ea-1) ... 263s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode 263s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 263s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 263s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 263s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 263s Setting up libcommons-codec-java (1.16.0-1) ... 263s Setting up libcommons-io-java (2.11.0-2) ... 263s Setting up libmpj-java (0.44+dfsg-4) ... 263s Processing triggers for libc-bin (2.39-0ubuntu6) ... 263s Processing triggers for man-db (2.12.0-3build4) ... 264s Processing triggers for ca-certificates-java (20240118) ... 264s Adding debian:ACCVRAIZ1.pem 264s Adding debian:AC_RAIZ_FNMT-RCM.pem 264s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 264s Adding debian:ANF_Secure_Server_Root_CA.pem 264s Adding debian:Actalis_Authentication_Root_CA.pem 264s Adding debian:AffirmTrust_Commercial.pem 264s Adding debian:AffirmTrust_Networking.pem 264s Adding debian:AffirmTrust_Premium.pem 264s Adding debian:AffirmTrust_Premium_ECC.pem 264s Adding debian:Amazon_Root_CA_1.pem 264s Adding debian:Amazon_Root_CA_2.pem 264s Adding debian:Amazon_Root_CA_3.pem 264s Adding debian:Amazon_Root_CA_4.pem 264s Adding debian:Atos_TrustedRoot_2011.pem 264s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 264s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 264s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 264s Adding debian:BJCA_Global_Root_CA1.pem 264s Adding debian:BJCA_Global_Root_CA2.pem 264s Adding debian:Baltimore_CyberTrust_Root.pem 264s Adding debian:Buypass_Class_2_Root_CA.pem 264s Adding debian:Buypass_Class_3_Root_CA.pem 264s Adding debian:CA_Disig_Root_R2.pem 264s Adding debian:CFCA_EV_ROOT.pem 264s Adding debian:COMODO_Certification_Authority.pem 264s Adding debian:COMODO_ECC_Certification_Authority.pem 264s Adding debian:COMODO_RSA_Certification_Authority.pem 264s Adding debian:Certainly_Root_E1.pem 264s Adding debian:Certainly_Root_R1.pem 264s Adding debian:Certigna.pem 264s Adding debian:Certigna_Root_CA.pem 264s Adding debian:Certum_EC-384_CA.pem 264s Adding debian:Certum_Trusted_Network_CA.pem 264s Adding debian:Certum_Trusted_Network_CA_2.pem 264s Adding debian:Certum_Trusted_Root_CA.pem 264s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 264s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 264s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 264s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 264s Adding debian:Comodo_AAA_Services_root.pem 264s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 264s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 264s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 264s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 264s Adding debian:DigiCert_Assured_ID_Root_CA.pem 264s Adding debian:DigiCert_Assured_ID_Root_G2.pem 264s Adding debian:DigiCert_Assured_ID_Root_G3.pem 264s Adding debian:DigiCert_Global_Root_CA.pem 264s Adding debian:DigiCert_Global_Root_G2.pem 264s Adding debian:DigiCert_Global_Root_G3.pem 264s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 264s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 264s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 264s Adding debian:DigiCert_Trusted_Root_G4.pem 264s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 264s Adding debian:Entrust_Root_Certification_Authority.pem 264s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 264s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 264s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 264s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 264s Adding debian:GLOBALTRUST_2020.pem 264s Adding debian:GTS_Root_R1.pem 264s Adding debian:GTS_Root_R2.pem 264s Adding debian:GTS_Root_R3.pem 264s Adding debian:GTS_Root_R4.pem 264s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 264s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 264s Adding debian:GlobalSign_Root_CA.pem 264s Adding debian:GlobalSign_Root_CA_-_R3.pem 264s Adding debian:GlobalSign_Root_CA_-_R6.pem 264s Adding debian:GlobalSign_Root_E46.pem 264s Adding debian:GlobalSign_Root_R46.pem 264s Adding debian:Go_Daddy_Class_2_CA.pem 264s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 264s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 264s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 264s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 264s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 264s Adding debian:HiPKI_Root_CA_-_G1.pem 264s Adding debian:Hongkong_Post_Root_CA_3.pem 264s Adding debian:ISRG_Root_X1.pem 264s Adding debian:ISRG_Root_X2.pem 264s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 264s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 264s Adding debian:Izenpe.com.pem 264s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 264s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 264s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 264s Adding debian:NAVER_Global_Root_Certification_Authority.pem 264s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 264s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 264s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 264s Adding debian:QuoVadis_Root_CA_1_G3.pem 264s Adding debian:QuoVadis_Root_CA_2.pem 264s Adding debian:QuoVadis_Root_CA_2_G3.pem 264s Adding debian:QuoVadis_Root_CA_3.pem 264s Adding debian:QuoVadis_Root_CA_3_G3.pem 264s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 264s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 264s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 264s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 264s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 264s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 264s Adding debian:SZAFIR_ROOT_CA2.pem 264s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 264s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 264s Adding debian:SecureSign_RootCA11.pem 264s Adding debian:SecureTrust_CA.pem 264s Adding debian:Secure_Global_CA.pem 264s Adding debian:Security_Communication_ECC_RootCA1.pem 264s Adding debian:Security_Communication_RootCA2.pem 264s Adding debian:Security_Communication_RootCA3.pem 264s Adding debian:Security_Communication_Root_CA.pem 264s Adding debian:Starfield_Class_2_CA.pem 264s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 264s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 264s Adding debian:SwissSign_Gold_CA_-_G2.pem 264s Adding debian:SwissSign_Silver_CA_-_G2.pem 264s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 264s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 264s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 264s Adding debian:TWCA_Global_Root_CA.pem 264s Adding debian:TWCA_Root_Certification_Authority.pem 264s Adding debian:TeliaSonera_Root_CA_v1.pem 264s Adding debian:Telia_Root_CA_v2.pem 264s Adding debian:TrustAsia_Global_Root_CA_G3.pem 264s Adding debian:TrustAsia_Global_Root_CA_G4.pem 264s Adding debian:Trustwave_Global_Certification_Authority.pem 264s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 264s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 264s Adding debian:TunTrust_Root_CA.pem 264s Adding debian:UCA_Extended_Validation_Root.pem 264s Adding debian:UCA_Global_G2_Root.pem 264s Adding debian:USERTrust_ECC_Certification_Authority.pem 264s Adding debian:USERTrust_RSA_Certification_Authority.pem 264s Adding debian:XRamp_Global_CA_Root.pem 264s Adding debian:certSIGN_ROOT_CA.pem 264s Adding debian:certSIGN_Root_CA_G2.pem 264s Adding debian:e-Szigno_Root_CA_2017.pem 264s Adding debian:ePKI_Root_Certification_Authority.pem 264s Adding debian:emSign_ECC_Root_CA_-_C3.pem 264s Adding debian:emSign_ECC_Root_CA_-_G3.pem 264s Adding debian:emSign_Root_CA_-_C1.pem 264s Adding debian:emSign_Root_CA_-_G1.pem 264s Adding debian:vTrus_ECC_Root_CA.pem 264s Adding debian:vTrus_Root_CA.pem 264s done. 264s Setting up bbmap (39.06+dfsg-1) ... 264s Setting up autopkgtest-satdep (0) ... 277s (Reading database ... 61007 files and directories currently installed.) 277s Removing autopkgtest-satdep (0) ... 282s autopkgtest [18:44:35]: test run-unit-test: [----------------------- 284s 284s # bbmap 284s bbmap.sh --version 284s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 284s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 --version 284s BBMap version 39.06 284s For help, please run the shellscript with no parameters, or look in /docs/. 284s bbmap.sh --help 284s 284s BBMap 284s Written by Brian Bushnell, from Dec. 2010 - present 284s Last modified September 15, 2022 284s 284s Description: Fast and accurate splice-aware read aligner. 284s Please read bbmap/docs/guides/BBMapGuide.txt for more information. 284s 284s To index: bbmap.sh ref= 284s To map: bbmap.sh in= out= 284s To map without writing an index: 284s bbmap.sh ref= in= out= nodisk 284s 284s in=stdin will accept reads from standard in, and out=stdout will write to 284s standard out, but file extensions are still needed to specify the format of the 284s input and output files e.g. in=stdin.fa.gz will read gzipped fasta from 284s standard in; out=stdout.sam.gz will write gzipped sam. 284s 284s Indexing Parameters (required when building the index): 284s nodisk=f Set to true to build index in memory and write nothing 284s to disk except output. 284s ref= Specify the reference sequence. Only do this ONCE, 284s when building the index (unless using 'nodisk'). 284s build=1 If multiple references are indexed in the same directory, 284s each needs a unique numeric ID (unless using 'nodisk'). 284s k=13 Kmer length, range 8-15. Longer is faster but uses 284s more memory. Shorter is more sensitive. 284s If indexing and mapping are done in two steps, K should 284s be specified each time. 284s path=<.> Specify the location to write the index, if you don't 284s want it in the current working directory. 284s usemodulo=f Throw away ~80% of kmers based on remainder modulo a 284s number (reduces RAM by 50% and sensitivity slightly). 284s Should be enabled both when building the index AND 284s when mapping. 284s rebuild=f Force a rebuild of the index (ref= should be set). 284s 284s Input Parameters: 284s build=1 Designate index to use. Corresponds to the number 284s specified when building the index. 284s in= Primary reads input; required parameter. 284s in2= For paired reads in two files. 284s interleaved=auto True forces paired/interleaved input; false forces 284s single-ended mapping. If not specified, interleaved 284s status will be autodetected from read names. 284s fastareadlen=500 Break up FASTA reads longer than this. Max is 500 for 284s BBMap and 6000 for BBMapPacBio. Only works for FASTA 284s input (use 'maxlen' for FASTQ input). The default for 284s bbmap.sh is 500, and for mapPacBio.sh is 6000. 284s unpigz=f Spawn a pigz (parallel gzip) process for faster 284s decompression than using Java. 284s Requires pigz to be installed. 284s touppercase=t (tuc) Convert lowercase letters in reads to upper case 284s (otherwise they will not match the reference). 284s 284s Sampling Parameters: 284s 284s reads=-1 Set to a positive number N to only process the first N 284s reads (or pairs), then quit. -1 means use all reads. 284s samplerate=1 Set to a number from 0 to 1 to randomly select that 284s fraction of reads for mapping. 1 uses all reads. 284s skipreads=0 Set to a number N to skip the first N reads (or pairs), 284s then map the rest. 284s 284s Mapping Parameters: 284s fast=f This flag is a macro which sets other paramters to run 284s faster, at reduced sensitivity. Bad for RNA-seq. 284s slow=f This flag is a macro which sets other paramters to run 284s slower, at greater sensitivity. 'vslow' is even slower. 284s maxindel=16000 Don't look for indels longer than this. Lower is faster. 284s Set to >=100k for RNAseq with long introns like mammals. 284s strictmaxindel=f When enabled, do not allow indels longer than 'maxindel'. 284s By default these are not sought, but may be found anyway. 284s tipsearch=100 Look this far for read-end deletions with anchors 284s shorter than K, using brute force. 284s minid=0.76 Approximate minimum alignment identity to look for. 284s Higher is faster and less sensitive. 284s minhits=1 Minimum number of seed hits required for candidate sites. 284s Higher is faster. 284s local=f Set to true to use local, rather than global, alignments. 284s This will soft-clip ugly ends of poor alignments. 284s perfectmode=f Allow only perfect mappings when set to true (very fast). 284s semiperfectmode=f Allow only perfect and semiperfect (perfect except for 284s N's in the reference) mappings. 284s threads=auto (t) Set to number of threads desired. By default, uses 284s all cores available. 284s ambiguous=best (ambig) Set behavior on ambiguously-mapped reads (with 284s multiple top-scoring mapping locations). 284s best (use the first best site) 284s toss (consider unmapped) 284s random (select one top-scoring site randomly) 284s all (retain all top-scoring sites) 284s samestrandpairs=f (ssp) Specify whether paired reads should map to the 284s same strand or opposite strands. 284s requirecorrectstrand=t (rcs) Forbid pairing of reads without correct strand 284s orientation. Set to false for long-mate-pair libraries. 284s killbadpairs=f (kbp) If a read pair is mapped with an inappropriate 284s insert size or orientation, the read with the lower 284s mapping quality is marked unmapped. 284s pairedonly=f (po) Treat unpaired reads as unmapped. Thus they will 284s be sent to 'outu' but not 'outm'. 284s rcomp=f Reverse complement both reads prior to mapping (for LMP 284s outward-facing libraries). 284s rcompmate=f Reverse complement read2 prior to mapping. 284s pairlen=32000 Set max allowed distance between paired reads. 284s (insert size)=(pairlen)+(read1 length)+(read2 length) 284s rescuedist=1200 Don't try to rescue paired reads if avg. insert size 284s greater than this. Lower is faster. 284s rescuemismatches=32 Maximum mismatches allowed in a rescued read. Lower 284s is faster. 284s averagepairdist=100 (apd) Initial average distance between paired reads. 284s Varies dynamically; does not need to be specified. 284s deterministic=f Run in deterministic mode. In this case it is good 284s to set averagepairdist. BBMap is deterministic 284s without this flag if using single-ended reads, 284s or run singlethreaded. 284s bandwidthratio=0 (bwr) If above zero, restrict alignment band to this 284s fraction of read length. Faster but less accurate. 284s bandwidth=0 (bw) Set the bandwidth directly. 284s fraction of read length. Faster but less accurate. 284s usejni=f (jni) Do alignments faster, in C code. Requires 284s compiling the C code; details are in /jni/README.txt. 284s maxsites2=800 Don't analyze (or print) more than this many alignments 284s per read. 284s ignorefrequentkmers=t (ifk) Discard low-information kmers that occur often. 284s excludefraction=0.03 (ef) Fraction of kmers to ignore. For example, 0.03 284s will ignore the most common 3% of kmers. 284s greedy=t Use a greedy algorithm to discard the least-useful 284s kmers on a per-read basis. 284s kfilter=0 If positive, potential mapping sites must have at 284s least this many consecutive exact matches. 284s 284s 284s Quality and Trimming Parameters: 284s qin=auto Set to 33 or 64 to specify input quality value ASCII 284s offset. 33 is Sanger, 64 is old Solexa. 284s qout=auto Set to 33 or 64 to specify output quality value ASCII 284s offset (only if output format is fastq). 284s qtrim=f Quality-trim ends before mapping. Options are: 284s 'f' (false), 'l' (left), 'r' (right), and 'lr' (both). 284s untrim=f Undo trimming after mapping. Untrimmed bases will be 284s soft-clipped in cigar strings. 284s trimq=6 Trim regions with average quality below this 284s (phred algorithm). 284s mintrimlength=60 (mintl) Don't trim reads to be shorter than this. 284s fakefastaquality=-1 (ffq) Set to a positive number 1-50 to generate fake 284s quality strings for fasta input reads. 284s ignorebadquality=f (ibq) Keep going, rather than crashing, if a read has 284s out-of-range quality values. 284s usequality=t Use quality scores when determining which read kmers 284s to use as seeds. 284s minaveragequality=0 (maq) Do not map reads with average quality below this. 284s maqb=0 If positive, calculate maq from this many initial bases. 284s 284s Output Parameters: 284s out= Write all reads to this file. 284s outu= Write only unmapped reads to this file. Does not 284s include unmapped paired reads with a mapped mate. 284s outm= Write only mapped reads to this file. Includes 284s unmapped paired reads with a mapped mate. 284s mappedonly=f If true, treats 'out' like 'outm'. 284s bamscript= (bs) Write a shell script to that will turn 284s the sam output into a sorted, indexed bam file. 284s ordered=f Set to true to output reads in same order as input. 284s Slower and uses more memory. 284s overwrite=f (ow) Allow process to overwrite existing files. 284s secondary=f Print secondary alignments. 284s sssr=0.95 (secondarysitescoreratio) Print only secondary alignments 284s with score of at least this fraction of primary. 284s ssao=f (secondarysiteasambiguousonly) Only print secondary 284s alignments for ambiguously-mapped reads. 284s maxsites=5 Maximum number of total alignments to print per read. 284s Only relevant when secondary=t. 284s quickmatch=f Generate cigar strings more quickly. 284s trimreaddescriptions=f (trd) Truncate read and ref names at the first whitespace, 284s assuming that the remainder is a comment or description. 284s ziplevel=2 (zl) Compression level for zip or gzip output. 284s pigz=f Spawn a pigz (parallel gzip) process for faster 284s compression than Java. Requires pigz to be installed. 284s machineout=f Set to true to output statistics in machine-friendly 284s 'key=value' format. 284s printunmappedcount=f Print the total number of unmapped reads and bases. 284s If input is paired, the number will be of pairs 284s for which both reads are unmapped. 284s showprogress=0 If positive, print a '.' every X reads. 284s showprogress2=0 If positive, print the number of seconds since the 284s last progress update (instead of a '.'). 284s renamebyinsert=f Renames reads based on their mapped insert size. 284s 284s Bloom-Filtering Parameters (bloomfilter.sh is the standalone version). 284s bloom=f Use a Bloom filter to ignore reads not sharing kmers 284s with the reference. This uses more memory, but speeds 284s mapping when most reads don't match the reference. 284s bloomhashes=2 Number of hash functions. 284s bloomminhits=3 Number of consecutive hits bbmap.sh ref=example.fasta 284s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 284s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 ref=example.fasta 284s to be considered matched. 284s bloomk=31 Bloom filter kmer length. 284s bloomserial=t Use the serialized Bloom filter for greater loading 284s speed, if available. If not, generate and write one. 284s 284s Post-Filtering Parameters: 284s idfilter=0 Independant of minid; sets exact minimum identity 284s allowed for alignments to be printed. Range 0 to 1. 284s subfilter=-1 Ban alignments with more than this many substitutions. 284s insfilter=-1 Ban alignments with more than this many insertions. 284s delfilter=-1 Ban alignments with more than this many deletions. 284s indelfilter=-1 Ban alignments with more than this many indels. 284s editfilter=-1 Ban alignments with more than this many edits. 284s inslenfilter=-1 Ban alignments with an insertion longer than this. 284s dellenfilter=-1 Ban alignments with a deletion longer than this. 284s nfilter=-1 Ban alignments with more than this many ns. This 284s includes nocall, noref, and off scaffold ends. 284s 284s Sam flags and settings: 284s noheader=f Disable generation of header lines. 284s sam=1.4 Set to 1.4 to write Sam version 1.4 cigar strings, 284s with = and X, or 1.3 to use M. 284s saa=t (secondaryalignmentasterisks) Use asterisks instead of 284s bases for sam secondary alignments. 284s cigar=t Set to 'f' to skip generation of cigar strings (faster). 284s keepnames=f Keep original names of paired reads, rather than 284s ensuring both reads have the same name. 284s intronlen=999999999 Set to a lower number like 10 to change 'D' to 'N' in 284s cigar strings for deletions of at least that length. 284s rgid= Set readgroup ID. All other readgroup fields 284s can be set similarly, with the flag rgXX= 284s If you set a readgroup flag to the word 'filename', 284s e.g. rgid=filename, the input file name will be used. 284s mdtag=f Write MD tags. 284s nhtag=f Write NH tags. 284s xmtag=f Write XM tags (may only work correctly with ambig=all). 284s amtag=f Write AM tags. 284s nmtag=f Write NM tags. 284s xstag=f Set to 'xs=fs', 'xs=ss', or 'xs=us' to write XS tags 284s for RNAseq using firststrand, secondstrand, or 284s unstranded libraries. Needed by Cufflinks. 284s JGI mainly uses 'firststrand'. 284s stoptag=f Write a tag indicating read stop location, prefixed by YS:i: 284s lengthtag=f Write a tag indicating (query,ref) alignment lengths, 284s prefixed by YL:Z: 284s idtag=f Write a tag indicating percent identity, prefixed by YI:f: 284s inserttag=f Write a tag indicating insert size, prefixed by X8:Z: 284s scoretag=f Write a tag indicating BBMap's raw score, prefixed by YR:i: 284s timetag=f Write a tag indicating this read's mapping time, prefixed by X0:i: 284s boundstag=f Write a tag indicating whether either read in the pair 284s goes off the end of the reference, prefixed by XB:Z: 284s notags=f Turn off all optional tags. 284s 284s Histogram and statistics output parameters: 284s scafstats= Statistics on how many reads mapped to which scaffold. 284s refstats= Statistics on how many reads mapped to which reference 284s file; only for BBSplit. 284s sortscafs=t Sort scaffolds or references by read count. 284s bhist= Base composition histogram by position. 284s qhist= Quality histogram by position. 284s aqhist= Histogram of average read quality. 284s bqhist= Quality histogram designed for box plots. 284s lhist= Read length histogram. 284s ihist= Write histogram of insert sizes (for paired reads). 284s ehist= Errors-per-read histogram. 284s qahist= Quality accuracy histogram of error rates versus 284s quality score. 284s indelhist= Indel length histogram. 284s mhist= Histogram of match, sub, del, and ins rates by 284s read location. 284s gchist= Read GC content histogram. 284s gcbins=100 Number gchist bins. Set to 'auto' to use read length. 284s gcpairs=t Use average GC of paired reads. 284s idhist= Histogram of read count versus percent identity. 284s idbins=100 Number idhist bins. Set to 'auto' to use read length. 284s statsfile=stderr Mapping statistics are printed here. 284s 284s Coverage output parameters (these may reduce speed and use more RAM): 284s covstats= Per-scaffold coverage info. 284s rpkm= Per-scaffold RPKM/FPKM counts. 284s covhist= Histogram of # occurrences of each depth level. 284s basecov= Coverage per base location. 284s bincov= Print binned coverage per location (one line per X bases). 284s covbinsize=1000 Set the binsize for binned coverage output. 284s nzo=t Only print scaffolds with nonzero coverage. 284s twocolumn=f Change to true to print only ID and Avg_fold instead of 284s all 6 columns to the 'out=' file. 284s 32bit=f Set to true if you need per-base coverage over 64k. 284s strandedcov=f Track coverage for plus and minus strand independently. 284s startcov=f Only track start positions of reads. 284s secondarycov=t Include coverage of secondary alignments. 284s physcov=f Calculate physical coverage for paired reads. 284s This includes the unsequenced bases. 284s delcoverage=t (delcov) Count bases covered by deletions as covered. 284s True is faster than false. 284s covk=0 If positive, calculate kmer coverage statistics. 284s 284s Java Parameters: 284s -Xmx This will set Java's memory usage, 284s overriding autodetection. 284s -Xmx20g will specify 20 gigs of RAM, and -Xmx800m 284s will specify 800 megs. The max is typically 85% of 284s physical memory. The human genome requires around 24g, 284s or 12g with the 'usemodulo' flag. The index uses 284s roughly 6 bytes per reference base. 284s -eoom This flag will cause the process to exit if an 284s out-of-memory exception occurs. Requires Java 8u92+. 284s -da Disable assertions. 284s 284s Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter 284s any problems, or post at: http://seqanswers.com/forums/showthread.php?t=41057 284s 284s Executing align2.BBMap [build=1, overwrite=true, fastareadlen=500, ref=example.fasta] 284s Version 39.06 284s 284s No output file. 284s Writing reference. 284s Executing dna.FastaToChromArrays2 [example.fasta, 1, writeinthread=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670912, writechroms=true, minscaf=1, midpad=300, startpad=8000, stoppad=8000, nodisk=false] 284s 284s Set genScaffoldInfo=true 284s Writing chunk 1 284s Set genome to 1 284s 284s Loaded Reference: 0.014 seconds. 284s Loading index for chunk 1-1, build 1 284s No index available; generating from reference genome: /tmp/autopkgtest.5bOgD2/autopkgtest_tmp/ref/index/1/chr1_index_k13_c16_b1.block 284s Indexing threads started for block 0-1 284s Indexing threads finished for block 0-1 286s Generated Index: 1.451 seconds. 286s No reads to process; quitting. 286s 286s Total time: 1.637 seconds. 286s test -d ref 286s bbmap.sh in=misc_dna_as_sanger.fastq out=out.sam 286s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 286s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 in=misc_dna_as_sanger.fastq out=out.sam 286s Executing align2.BBMap [build=1, overwrite=true, fastareadlen=500, in=misc_dna_as_sanger.fastq, out=out.sam] 286s Version 39.06 286s 286s Retaining first best site only for ambiguous mappings. 286s Set genome to 1 286s 286s Loaded Reference: 0.037 seconds. 286s Loading index for chunk 1-1, build 1 287s Generated Index: 0.631 seconds. 290s Analyzed Index: 3.600 seconds. 290s Started output stream: 0.028 seconds. 290s Cleared Memory: 0.115 seconds. 291s Processing reads in single-ended mode. 291s Started read stream. 291s Started 8 mapping threads. 291s Detecting finished threads: 0, 1, 2, 3, 4, 5, 6, 7 291s 291s ------------------ Results ------------------ 291s 291s Genome: 1 291s Key Length: 13 291s Max Indel: 16000 291s Minimum Score Ratio: 0.56 291s Mapping Mode: normal 291s Reads Used: 4 (153 bases) 291s 291s Mapping: 0.154 seconds. 291s Reads/sec: 25.90 291s kBases/sec: 0.99 291s 291s 291s Read 1 data: pct reads num reads pct bases num bases 291s 291s mapped: 0.0000% 0 0.0000% 0 291s unambiguous: 0.0000% 0 0.0000% 0 291s ambiguous: 0.0000% 0 0.0000% 0 291s low-Q discards: 25.0000% 1 19.6078% 30 291s 291s perfect best site: 0.0000% 0 0.0000% 0 291s semiperfect site: 0.0000% 0 0.0000% 0 291s 291s Match Rate: NA NA NaN% 0 291s Error Rate: NaN% 0 NaN% 0 291s Sub Rate: NaN% 0 NaN% 0 291s Del Rate: NaN% 0 NaN% 0 291s Ins Rate: NaN% 0 NaN% 0 291s N Rate: NaN% 0 NaN% 0 291s 291s Total time: 4.677 seconds. 291s test -r out.sam 291s bbmap.sh ref=example.fasta in=example.fastq out=out2.sam nodisk 291s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 291s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 ref=example.fasta in=example.fastq out=out2.sam nodisk 291s Executing align2.BBMap [build=1, overwrite=true, fastareadlen=500, ref=example.fasta, in=example.fastq, out=out2.sam, nodisk] 291s Version 39.06 291s 291s Retaining first best site only for ambiguous mappings. 291s Executing dna.FastaToChromArrays2 [example.fasta, 1, writeinthread=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670912, writechroms=false, minscaf=1, midpad=300, startpad=8000, stoppad=8000, nodisk=true] 291s 291s Set genScaffoldInfo=true 291s Set genome to 1 291s 291s Loaded Reference: 0.002 seconds. 291s Loading index for chunk 1-1, build 1 291s Indexing threads started for block 0-1 291s Indexing threads finished for block 0-1 291s Generated Index: 0.233 seconds. 295s Analyzed Index: 3.725 seconds. 295s Started output stream: 0.028 seconds. 295s Cleared Memory: 0.117 seconds. 295s Processing reads in single-ended mode. 295s Started read stream. 295s Started 8 mapping threads. 295s Detecting finished threads: 0, 1, 2, 3, 4, 5, 6, 7 295s 295s ------------------ Results ------------------ 295s 295s Genome: 1 295s Key Length: 13 295s Max Indel: 16000 295s Minimum Score Ratio: 0.56 295s Mapping Mode: normal 295s Reads Used: 3 (75 bases) 295s 295s Mapping: 0.135 seconds. 295s Reads/sec: 22.27 295s kBases/sec: 0.56 295s 295s 295s Read 1 data: pct reads num reads pct bases num bases 295s 295s mapped: 100.0000% 3 100.0000% 75 295s unambiguous: 100.0000% 3 100.0000% 75 295s ambiguous: 0.0000% 0 0.0000% 0 295s low-Q discards: 0.0000% 0 0.0000% 0 295s 295s perfect best site: 100.0000% 3 100.0000% 75 295s semiperfect site: 100.0000% 3 100.0000% 75 295s 295s Match Rate: NA NA 100.0000% 75 295s Error Rate: 0.0000% 0 0.0000% 0 295s Sub Rate: 0.0000% 0 0.0000% 0 295s Del Rate: 0.0000% 0 0.0000% 0 295s Ins Rate: 0.0000% 0 0.0000% 0 295s N Rate: 0.0000% 0 0.0000% 0 295s 295s Total time: 4.457 seconds. 295s test -r out2.sam 295s 295s # bbduk 295s bbduk.sh --version 295s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 295s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.BBDuk --version 296s BBMap version 39.06 296s For help, please run the shellscript with no parameters, or look in /docs/. 296s bbduk.sh --help 296s 296s Written by Brian Bushnell 296s Last modified November 9, 2023 296s 296s Description: Compares reads to the kmers in a reference dataset, optionally 296s allowing an edit distance. Splits the reads into two outputs - those that 296s match the reference, and those that don't. Can also trim (remove) the matching 296s parts of the reads rather than binning the reads. 296s Please read bbmap/docs/guides/BBDukGuide.txt for more information. 296s 296s Usage: bbduk.sh in= out= ref= 296s 296s Input may be stdin or a fasta or fastq file, compressed or uncompressed. 296s If you pipe via stdin/stdout, please include the file type; e.g. for gzipped 296s fasta input, set in=stdin.fa.gz 296s 296s Input parameters: 296s in= Main input. in=stdin.fq will pipe from stdin. 296s in2= Input for 2nd read of pairs in a different file. 296s ref= Comma-delimited list of reference files. 296s In addition to filenames, you may also use the keywords: 296s adapters, artifacts, phix, lambda, pjet, mtst, kapa 296s literal= Comma-delimited list of literal reference sequences. 296s touppercase=f (tuc) Change all bases upper-case. 296s interleaved=auto (int) t/f overrides interleaved autodetection. 296s Must be set mainually when streaming fastq input. 296s qin=auto Input quality offset: 33 (Sanger), 64, or auto. 296s reads=-1 If positive, quit after processing X reads or pairs. 296s copyundefined=f (cu) Process non-AGCT IUPAC reference bases by making all 296s possible unambiguous copies. Intended for short motifs 296s or adapter barcodes, as time/memory use is exponential. 296s samplerate=1 Set lower to only process a fraction of input reads. 296s samref= Optional reference fasta for processing sam files. 296s 296s Output parameters: 296s out= (outnonmatch) Write reads here that do not contain 296s kmers matching the database. 'out=stdout.fq' will pipe 296s to standard out. 296s out2= (outnonmatch2) Use this to write 2nd read of pairs to a 296s different file. 296s outm= (outmatch) Write reads here that fail filters. In default 296s kfilter mode, this means any read with a matching kmer. 296s In any mode, it also includes reads that fail filters such 296s as minlength, mingc, maxgc, entropy, etc. In other words, 296s it includes all reads that do not go to 'out'. 296s outm2= (outmatch2) Use this to write 2nd read of pairs to a 296s different file. 296s outs= (outsingle) Use this to write singleton reads whose mate 296s was trimmed shorter than minlen. 296s stats= Write statistics about which contamininants were detected. 296s refstats= Write statistics on a per-reference-file basis. 296s rpkm= Write RPKM for each reference sequence (for RNA-seq). 296s dump= Dump kmer tables to a file, in fasta format. 296s duk= Write statistics in duk's format. *DEPRECATED* 296s nzo=t Only write statistics about ref sequences with nonzero hits. 296s overwrite=t (ow) Grant permission to overwrite files. 296s showspeed=t (ss) 'f' suppresses display of processing speed. 296s ziplevel=2 (zl) Compression level; 1 (min) through 9 (max). 296s fastawrap=70 Length of lines in fasta output. 296s qout=auto Output quality offset: 33 (Sanger), 64, or auto. 296s statscolumns=3 (cols) Number of columns for stats output, 3 or 5. 296s 5 includes base counts. 296s rename=f Rename reads to indicate which sequences they matched. 296s refnames=f Use names of reference files rather than scaffold IDs. 296s trd=f Truncate read and ref names at the first whitespace. 296s ordered=f Set to true to output reads in same order as input. 296s maxbasesout=-1 If positive, quit after writing approximately this many 296s bases to out (outu/outnonmatch). 296s maxbasesoutm=-1 If positive, quit after writing approximately this many 296s bases to outm (outmatch). 296s json=f Print to screen in json format. 296s 296s Histogram output parameters: 296s bhist= Base composition histogram by position. 296s qhist= Quality histogram by position. 296s qchist= Count of bases with each quality value. 296s aqhist= Histogram of average read quality. 296s bqhist= Quality histogram designed for box plots. 296s lhist= Read length histogram. 296s phist= Polymer length histogram. 296s gchist= Read GC content histogram. 296s enthist= Read entropy histogram. 296s bbduk.sh in1=misc_dna_as_illumina.fastq in2=misc_rna_as_illumina.fastq \ 296s qtrim=rl trimq=15 minlen=75 out=out.fastq.gz 296s ihist= Insert size histogram, for paired reads in mapped sam. 296s gcbins=100 Number gchist bins. Set to 'auto' to use read length. 296s maxhistlen=6000 Set an upper bound for histogram lengths; higher uses 296s more memory. The default is 6000 for some histograms 296s and 80000 for others. 296s 296s Histograms for mapped sam/bam files only: 296s histbefore=t Calculate histograms from reads before processing. 296s ehist= Errors-per-read histogram. 296s qahist= Quality accuracy histogram of error rates versus quality 296s score. 296s indelhist= Indel length histogram. 296s mhist= Histogram of match, sub, del, and ins rates by position. 296s idhist= Histogram of read count versus percent identity. 296s idbins=100 Number idhist bins. Set to 'auto' to use read length. 296s varfile= Ignore substitution errors listed in this file when 296s calculating error rates. Can be generated with 296s CallVariants. 296s vcf= Ignore substitution errors listed in this VCF file 296s when calculating error rates. 296s ignorevcfindels=t Also ignore indels listed in the VCF. 296s 296s Processing parameters: 296s k=27 Kmer length used for finding contaminants. Contaminants 296s shorter than k will not be found. k must be at least 1. 296s rcomp=t Look for reverse-complements of kmers in addition to 296s forward kmers. 296s maskmiddle=t (mm) Treat the middle base of a kmer as a wildcard, to 296s increase sensitivity in the presence of errors. This may 296s also be set to a number, e.g. mm=3, to mask that many bp. 296s The default mm=t corresponds to mm=1 for odd-length kmers 296s and mm=2 for even-length kmers (as of v39.04), while 296s mm=f is always equivalent to mm=0. 296s minkmerhits=1 (mkh) Reads need at least this many matching kmers 296s to be considered as matching the reference. 296s minkmerfraction=0.0 (mkf) A reads needs at least this fraction of its total 296s kmers to hit a ref, in order to be considered a match. 296s If this and minkmerhits are set, the greater is used. 296s mincovfraction=0.0 (mcf) A reads needs at least this fraction of its total 296s bases to be covered by ref kmers to be considered a match. 296s If specified, mcf overrides mkh and mkf. 296s hammingdistance=0 (hdist) Maximum Hamming distance for ref kmers (subs only). 296s Memory use is proportional to (3*K)^hdist. 296s qhdist=0 Hamming distance for query kmers; impacts speed, not memory. 296s editdistance=0 (edist) Maximum edit distance from ref kmers (subs 296s and indels). Memory use is proportional to (8*K)^edist. 296s hammingdistance2=0 (hdist2) Sets hdist for short kmers, when using mink. 296s qhdist2=0 Sets qhdist for short kmers, when using mink. 296s editdistance2=0 (edist2) Sets edist for short kmers, when using mink. 296s forbidn=f (fn) Forbids matching of read kmers containing N. 296s By default, these will match a reference 'A' if 296s hdist>0 or edist>0, to increase sensitivity. 296s removeifeitherbad=t (rieb) Paired reads get sent to 'outmatch' if either is 296s match (or either is trimmed shorter than minlen). 296s Set to false to require both. 296s trimfailures=f Instead of discarding failed reads, trim them to 1bp. 296s This makes the statistics a bit odd. 296s findbestmatch=f (fbm) If multiple matches, associate read with sequence 296s sharing most kmers. Reduces speed. 296s skipr1=f Don't do kmer-based operations on read 1. 296s skipr2=f Don't do kmer-based operations on read 2. 296s ecco=f For overlapping paired reads only. Performs error- 296s correction with BBMerge prior to kmer operations. 296s recalibrate=f (recal) Recalibrate quality scores. Requires calibration 296s matrices generated by CalcTrueQuality. 296s sam= If recalibration is desired, and matrices have not already 296s been generated, BBDuk will create them from the sam file. 296s amino=f Run in amino acid mode. Some features have not been 296s tested, but kmer-matching works fine. Maximum k is 12. 296s 296s Speed and Memory parameters: 296s threads=auto (t) Set number of threads to use; default is number of 296s logical processors. 296s prealloc=f Preallocate memory in table. Allows faster table loading 296s and more efficient memory usage, for a large reference. 296s monitor=f Kill this process if it crashes. monitor=600,0.01 would 296s kill after 600 seconds under 1% usage. 296s minrskip=1 (mns) Force minimal skip interval when indexing reference 296s kmers. 1 means use all, 2 means use every other kmer, etc. 296s maxrskip=1 (mxs) Restrict maximal skip interval when indexing 296s reference kmers. Normally all are used for scaffolds<100kb, 296s but with longer scaffolds, up to maxrskip-1 are skipped. 296s rskip= Set both minrskip and maxrskip to the same value. 296s If not set, rskip will vary based on sequence length. 296s qskip=1 Skip query kmers to increase speed. 1 means use all. 296s speed=0 Ignore this fraction of kmer space (0-15 out of 16) in both 296s reads and reference. Increases speed and reduces memory. 296s Note: Do not use more than one of 'speed', 'qskip', and 'rskip'. 296s 296s Trimming/Filtering/Masking parameters: 296s Note - if ktrim, kmask, and ksplit are unset, the default behavior is kfilter. 296s All kmer processing modes are mutually exclusive. 296s Reads only get sent to 'outm' purely based on kmer matches in kfilter mode. 296s 296s ktrim=f Trim reads to remove bases matching reference kmers, plus 296s all bases to the left or right. 296s Values: 296s f (don't trim), 296s r (trim to the right), 296s l (trim to the left) 296s ktrimtips=0 Set this to a positive number to perform ktrim on both 296s ends, examining only the outermost X bases. 296s kmask= Replace bases matching ref kmers with another symbol. 296s Allows any non-whitespace character, and processes short 296s kmers on both ends if mink is set. 'kmask=lc' will 296s convert masked bases to lowercase. 296s maskfullycovered=f (mfc) Only mask bases that are fully covered by kmers. 296s ksplit=f For single-ended reads only. Reads will be split into 296s pairs around the kmer. If the kmer is at the end of the 296s read, it will be trimmed instead. Singletons will go to 296s out, and pairs will go to outm. Do not use ksplit with 296s other operations such as quality-trimming or filtering. 296s mink=0 Look for shorter kmers at read tips down to this length, 296s when k-trimming or masking. 0 means disabled. Enabling 296s this will disable maskmiddle. 296s qtrim=f Trim read ends to remove bases with quality below trimq. 296s Performed AFTER looking for kmers. Values: 296s rl (trim both ends), 296s f (neither end), 296s r (right end only), 296s l (left end only), 296s w (sliding window). 296s trimq=6 Regions with average quality BELOW this will be trimmed, 296s if qtrim is set to something other than f. Can be a 296s floating-point number like 7.3. 296s trimclip=f Trim soft-clipped bases from sam files. 296s minlength=10 (ml) Reads shorter than this after trimming will be 296s discarded. Pairs will be discarded if both are shorter. 296s mlf=0 (minlengthfraction) Reads shorter than this fraction of 296s original length after trimming will be discarded. 296s maxlength= Reads longer than this after trimming will be discarded. 296s minavgquality=0 (maq) Reads with average quality (after trimming) below 296s this will be discarded. 296s maqb=0 If positive, calculate maq from this many initial bases. 296s minbasequality=0 (mbq) Reads with any base below this quality (after 296s trimming) will be discarded. 296s maxns=-1 If non-negative, reads with more Ns than this 296s (after trimming) will be discarded. 296s mcb=0 (minconsecutivebases) Discard reads without at least 296s this many consecutive called bases. 296s ottm=f (outputtrimmedtomatch) Output reads trimmed to shorter 296s than minlength to outm rather than discarding. 296s tp=0 (trimpad) Trim this much extra around matching kmers. 296s tbo=f (trimbyoverlap) Trim adapters based on where paired 296s reads overlap. 296s strictoverlap=t Adjust sensitivity for trimbyoverlap mode. 296s minoverlap=14 Require this many bases of overlap for detection. 296s mininsert=40 Require insert size of at least this for overlap. 296s Should be reduced to 16 for small RNA sequencing. 296s tpe=f (trimpairsevenly) When kmer right-trimming, trim both 296s reads to the minimum length of either. 296s forcetrimleft=0 (ftl) If positive, trim bases to the left of this position 296s (exclusive, 0-based). 296s forcetrimright=0 (ftr) If positive, trim bases to the right of this position 296s (exclusive, 0-based). 296s forcetrimright2=0 (ftr2) If positive, trim this many bases on the right end. 296s forcetrimmod=0 (ftm) If positive, right-trim length to be equal to zero, 296s modulo this number. 296s restrictleft=0 If positive, only look for kmer matches in the 296s leftmost X bases. 296s restrictright=0 If positive, only look for kmer matches in the 296s rightmost X bases. 296s NOTE: restrictleft and restrictright are mutually exclusive. If trimming 296s both ends is desired, use ktrimtips. 296s mingc=0 Discard reads with GC content below this. 296s maxgc=1 Discard reads with GC content above this. 296s gcpairs=t Use average GC of paired reads. 296s Also affects gchist. 296s tossjunk=f Discard reads with invalid characters as bases. 296s swift=f Trim Swift sequences: Trailing C/T/N R1, leading G/A/N R2. 296s 296s Header-parsing parameters - these require Illumina headers: 296s chastityfilter=f (cf) Discard reads with id containing ' 1:Y:' or ' 2:Y:'. 296s barcodefilter=f Remove reads with unexpected barcodes if barcodes is set, 296s or barcodes containing 'N' otherwise. A barcode must be 296s the last part of the read header. Values: 296s t: Remove reads with bad barcodes. 296s f: Ignore barcodes. 296s crash: Crash upon encountering bad barcodes. 296s barcodes= Comma-delimited list of barcodes or files of barcodes. 296s xmin=-1 If positive, discard reads with a lesser X coordinate. 296s ymin=-1 If positive, discard reads with a lesser Y coordinate. 296s xmax=-1 If positive, discard reads with a greater X coordinate. 296s ymax=-1 If positive, discard reads with a greater Y coordinate. 296s 296s Polymer trimming: 296s trimpolya=0 If greater than 0, trim poly-A or poly-T tails of 296s at least this length on either end of reads. 296s trimpolygleft=0 If greater than 0, trim poly-G prefixes of at least this 296s length on the left end of reads. Does not trim poly-C. 296s trimpolygright=0 If greater than 0, trim poly-G tails of at least this 296s length on the right end of reads. Does not trim poly-C. 296s trimpolyg=0 This sets both left and right at once. 296s filterpolyg=0 If greater than 0, remove reads with a poly-G prefix of 296s at least this length (on the left). 296s Note: there are also equivalent poly-C flags. 296s 296s Polymer tracking: 296s pratio=base,base 'pratio=G,C' will print the ratio of G to C polymers. 296s plen=20 Length of homopolymers to count. 296s 296s Entropy/Complexity parameters: 296s entropy=-1 Set between 0 and 1 to filter reads with entropy below 296s that value. Higher is more stringent. 296s entropywindow=50 Calculate entropy using a sliding window of this length. 296s entropyk=5 Calculate entropy using kmers of this length. 296s minbasefrequency=0 Discard reads with a minimum base frequency below this. 296s entropytrim=f Values: 296s f: (false) Do not entropy-trim. 296s r: (right) Trim low entropy on the right end only. 296s l: (left) Trim low entropy on the left end only. 296s rl: (both) Trim low entropy on both ends. 296s entropymask=f Values: 296s f: (filter) Discard low-entropy sequences. 296s t: (true) Mask low-entropy parts of sequences with N. 296s lc: Change low-entropy parts of sequences to lowercase. 296s entropymark=f Mark each base with its entropy value. This is on a scale 296s of 0-41 and is reported as quality scores, so the output 296s should be fastq or fasta+qual. 296s NOTE: If set, entropytrim overrides entropymask. 296s 296s Cardinality estimation: 296s cardinality=f (loglog) Count unique kmers using the LogLog algorithm. 296s cardinalityout=f (loglogout) Count unique kmers in output reads. 296s loglogk=31 Use this kmer length for counting. 296s loglogbuckets=2048 Use this many buckets for counting. 296s khist= Kmer frequency histogram; plots number of kmers versus 296s kmer depth. This is approximate. 296s khistout= Kmer frequency histogram for output reads. 296s 296s Java Parameters: 296s 296s -Xmx This will set Java's memory usage, overriding autodetection. 296s -Xmx20g will 296s specify 20 gigs of RAM, and -Xmx200m will specify 200 megs. 296s The max is typically 85% of physical memory. 296s -eoom This flag will cause the process to exit if an 296s out-of-memory exception occurs. Requires Java 8u92+. 296s -da Disable assertions. 296s 296s Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter any problems. 296s 296s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 296s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.BBDuk in1=misc_dna_as_illumina.fastq in2=misc_rna_as_illumina.fastq qtrim=rl trimq=15 minlen=75 out=out.fastq.gz 296s Executing jgi.BBDuk [in1=misc_dna_as_illumina.fastq, in2=misc_rna_as_illumina.fastq, qtrim=rl, trimq=15, minlen=75, out=out.fastq.gz] 296s Version 39.06 296s 296s 0.018 seconds. 296s Initial: 296s Memory: max=2306m, total=2306m, free=2287m, used=19m 296s 296s Input is being processed as paired 296s Changed from ASCII-33 to ASCII-64 on input 7: 55 -> 24 296s Changed from ASCII-33 to ASCII-64 on input 7: 55 -> 24 296s Started output streams: 0.023 seconds. 296s Processing time: 0.006 seconds. 296s 296s Input: 8 reads 306 bases. 296s QTrimmed: 0 reads (0.00%) 0 bases (0.00%) 296s Total Removed: 8 reads (100.00%) 306 bases (100.00%) 296s Result: 0 reads (0.00%) 0 bases (0.00%) 296s 296s Time: 0.031 seconds. 296s Reads Processed: 8 0.26k reads/sec 296s Bases Processed: 306 0.01m bases/sec 296s test -r out.fastq.gz 296s 296s # bbnorm 296s bbnorm.sh --version 296s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 296s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.KmerNormalize bits=32 --version 296s BBMap version 39.06 296s For help, please run the shellscript with no parameters, or look in /docs/. 296s bbnorm.sh --help 296s bbnorm.sh in=sanger_full_range_original_sanger.fastq qin=33 \ 296s out=out3.fastq outt=outt.fastq hist=hist.plt 296s 296s Written by Brian Bushnell 296s Last modified October 19, 2017 296s 296s Description: Normalizes read depth based on kmer counts. 296s Can also error-correct, bin reads by kmer depth, and generate a kmer depth histogram. 296s However, Tadpole has superior error-correction to BBNorm. 296s Please read bbmap/docs/guides/BBNormGuide.txt for more information. 296s 296s Usage: bbnorm.sh in= out= outt= hist= 296s 296s Input parameters: 296s in=null Primary input. Use in2 for paired reads in a second file 296s in2=null Second input file for paired reads in two files 296s extra=null Additional files to use for input (generating hash table) but not for output 296s fastareadlen=2^31 Break up FASTA reads longer than this. Can be useful when processing scaffolded genomes 296s tablereads=-1 Use at most this many reads when building the hashtable (-1 means all) 296s kmersample=1 Process every nth kmer, and skip the rest 296s readsample=1 Process every nth read, and skip the rest 296s interleaved=auto May be set to true or false to force the input read file to ovverride autodetection of the input file as paired interleaved. 296s qin=auto ASCII offset for input quality. May be 33 (Sanger), 64 (Illumina), or auto. 296s 296s Output parameters: 296s out= File for normalized or corrected reads. Use out2 for paired reads in a second file 296s outt= (outtoss) File for reads that were excluded from primary output 296s reads=-1 Only process this number of reads, then quit (-1 means all) 296s sampleoutput=t Use sampling on output as well as input (not used if sample rates are 1) 296s keepall=f Set to true to keep all reads (e.g. if you just want error correction). 296s zerobin=f Set to true if you want kmers with a count of 0 to go in the 0 bin instead of the 1 bin in histograms. 296s Default is false, to prevent confusion about how there can be 0-count kmers. 296s The reason is that based on the 'minq' and 'minprob' settings, some kmers may be excluded from the bloom filter. 296s tmpdir= This will specify a directory for temp files (only needed for multipass runs). If null, they will be written to the output directory. 296s usetempdir=t Allows enabling/disabling of temporary directory; if disabled, temp files will be written to the output directory. 296s qout=auto ASCII offset for output quality. May be 33 (Sanger), 64 (Illumina), or auto (same as input). 296s rename=f Rename reads based on their kmer depth. 296s 296s Hashing parameters: 296s k=31 Kmer length (values under 32 are most efficient, but arbitrarily high values are supported) 296s bits=32 Bits per cell in bloom filter; must be 2, 4, 8, 16, or 32. Maximum kmer depth recorded is 2^cbits. Automatically reduced to 16 in 2-pass. 296s Large values decrease accuracy for a fixed amount of memory, so use the lowest number you can that will still capture highest-depth kmers. 296s hashes=3 Number of times each kmer is hashed and stored. Higher is slower. 296s Higher is MORE accurate if there is enough memory, and LESS accurate if there is not enough memory. 296s prefilter=f True is slower, but generally more accurate; filters out low-depth kmers from the main hashtable. The prefilter is more memory-efficient because it uses 2-bit cells. 296s prehashes=2 Number of hashes for prefilter. 296s prefilterbits=2 (pbits) Bits per cell in prefilter. 296s prefiltersize=0.35 Fraction of memory to allocate to prefilter. 296s buildpasses=1 More passes can sometimes increase accuracy by iteratively removing low-depth kmers 296s minq=6 Ignore kmers containing bases with quality below this 296s minprob=0.5 Ignore kmers with overall probability of correctness below this 296s threads=auto (t) Spawn exactly X hashing threads (default is number of logical processors). Total active threads may exceed X due to I/O threads. 296s rdk=t (removeduplicatekmers) When true, a kmer's count will only be incremented once per read pair, even if that kmer occurs more than once. 296s 296s Normalization parameters: 296s fixspikes=f (fs) Do a slower, high-precision bloom filter lookup of kmers that appear to have an abnormally high depth due to collisions. 296s target=100 (tgt) Target normalization depth. NOTE: All depth parameters control kmer depth, not read depth. 296s For kmer depth Dk, read depth Dr, read length R, and kmer size K: Dr=Dk*(R/(R-K+1)) 296s maxdepth=-1 (max) Reads will not be downsampled when below this depth, even if they are above the target depth. 296s mindepth=5 (min) Kmers with depth below this number will not be included when calculating the depth of a read. 296s minkmers=15 (mgkpr) Reads must have at least this many kmers over min depth to be retained. Aka 'mingoodkmersperread'. 296s percentile=54.0 (dp) Read depth is by default inferred from the 54th percentile of kmer depth, but this may be changed to any number 1-100. 296s uselowerdepth=t (uld) For pairs, use the depth of the lower read as the depth proxy. 296s deterministic=t (dr) Generate random numbers deterministically to ensure identical output between multiple runs. May decrease speed with a huge number of threads. 296s passes=2 (p) 1 pass is the basic mode. 2 passes (default) allows greater accuracy, error detection, better contol of output depth. 296s 296s Error detection parameters: 296s hdp=90.0 (highdepthpercentile) Position in sorted kmer depth array used as proxy of a read's high kmer depth. 296s ldp=25.0 (lowdepthpercentile) Position in sorted kmer depth array used as proxy of a read's low kmer depth. 296s tossbadreads=f (tbr) Throw away reads detected as containing errors. 296s requirebothbad=f (rbb) Only toss bad pairs if both reads are bad. 296s errordetectratio=125 (edr) Reads with a ratio of at least this much between their high and low depth kmers will be classified as error reads. 296s highthresh=12 (ht) Threshold for high kmer. A high kmer at this or above are considered non-error. 296s lowthresh=3 (lt) Threshold for low kmer. Kmers at this and below are always considered errors. 296s 296s Error correction parameters: 296s ecc=f Set to true to correct errors. NOTE: Tadpole is now preferred for ecc as it does a better job. 296s ecclimit=3 Correct up to this many errors per read. If more are detected, the read will remain unchanged. 296s errorcorrectratio=140 (ecr) Adjacent kmers with a depth ratio of at least this much between will be classified as an error. 296s echighthresh=22 (echt) Threshold for high kmer. A kmer at this or above may be considered non-error. 296s eclowthresh=2 (eclt) Threshold for low kmer. Kmers at this and below are considered errors. 296s eccmaxqual=127 Do not correct bases with quality above this value. 296s aec=f (aggressiveErrorCorrection) Sets more aggressive values of ecr=100, ecclimit=7, echt=16, eclt=3. 296s cec=f (conservativeErrorCorrection) Sets more conservative values of ecr=180, ecclimit=2, echt=30, eclt=1, sl=4, pl=4. 296s meo=f (markErrorsOnly) Marks errors by reducing quality value of suspected errors; does not correct anything. 296s mue=t (markUncorrectableErrors) Marks errors only on uncorrectable reads; requires 'ecc=t'. 296s overlap=f (ecco) Error correct by read overlap. 296s 296s Depth binning parameters: 296s lowbindepth=10 (lbd) Cutoff for low depth bin. 296s highbindepth=80 (hbd) Cutoff for high depth bin. 296s outlow= Pairs in which both reads have a median below lbd go into this file. 296s outhigh= Pairs in which both reads have a median above hbd go into this file. 296s outmid= All other pairs go into this file. 296s 296s Histogram parameters: 296s hist= Specify a file to write the input kmer depth histogram. 296s histout= Specify a file to write the output kmer depth histogram. 296s histcol=3 (histogramcolumns) Number of histogram columns, 2 or 3. 296s pzc=f (printzerocoverage) Print lines in the histogram with zero coverage. 296s histlen=1048576 Max kmer depth displayed in histogram. Also affects statistics displayed, but does not affect normalization. 296s 296s Peak calling parameters: 296s peaks= Write the peaks to this file. Default is stdout. 296s minHeight=2 (h) Ignore peaks shorter than this. 296s minVolume=5 (v) Ignore peaks with less area than this. 296s minWidth=3 (w) Ignore peaks narrower than this. 296s minPeak=2 (minp) Ignore peaks with an X-value below this. 296s maxPeak=BIG (maxp) Ignore peaks with an X-value above this. 296s maxPeakCount=8 (maxpc) Print up to this many peaks (prioritizing height). 296s 296s Java Parameters: 296s -Xmx This will set Java's memory usage, overriding autodetection. 296s -Xmx20g will specify 20 gigs of RAM, and -Xmx200m will specify 200 megs. 296s The max is typically 85% of physical memory. 296s -eoom This flag will cause the process to exit if an 296s out-of-memory exception occurs. Requires Java 8u92+. 296s -da Disable assertions. 296s 296s Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter any problems. 296s 297s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 297s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.KmerNormalize bits=32 in=sanger_full_range_original_sanger.fastq qin=33 out=out3.fastq outt=outt.fastq hist=hist.plt 297s Executing jgi.KmerNormalize [bits=32, in=sanger_full_range_original_sanger.fastq, qin=33, out=out3.fastq, outt=outt.fastq, hist=hist.plt] 297s 297s 297s *********** Pass 1 ********** 297s 297s 297s Settings: 297s threads: 8 297s k: 31 297s deterministic: true 297s toss error reads: false 297s passes: 1 297s bits per cell: 16 297s cells: 806.44M 297s hashes: 3 297s base min quality: 5 297s kmer min prob: 0.5 297s 297s target depth: 400 297s min depth: 3 297s max depth: 500 297s min good kmers: 15 297s depth percentile: 64.8 297s ignore dupe kmers: true 297s fix spikes: false 297s histogram length: 65536 297s print zero cov: false 297s 297s Made hash table: hashes = 3 mem = 1.50 GB cells = 806.41M used = 0.000% 297s 297s Estimated unique kmers: 7 297s 297s Table creation time: 0.677 seconds. 297s Started output threads. 297s Started output threads. 297s Table read time: 0.012 seconds. 15.05 kb/sec 297s Total reads in: 2 0.000% Kept 297s Total bases in: 188 0.000% Kept 297s Error reads in: 2 100.000% 297s Error type 1: 2 100.000% 297s Error type 2: 0 0.000% 298s Error type 3: 0 0.000% 298s 298s Wrote histogram to hist.plt 298s Total kmers counted: 128 298s Total unique kmer count: 128 298s Includes forward kmers only. 298s The unique kmer estimate can be more accurate than the unique count, if the tables are very full. 298s The most accurate value is the greater of the two. 298s 298s Percent unique: 100.00% 298s Depth average: 1.00 (unique kmers) 298s Depth median: 1 (unique kmers) 298s Depth standard deviation: 0.00 (unique kmers) 298s Corrected depth average: 0.00 298s 298s Depth average: 1.00 (all kmers) 298s Depth median: 1 (all kmers) 298s Depth standard deviation: 0.00 (all kmers) 298s 298s Approx. read depth median: 1.47 298s 298s *********** Pass 2 ********** 298s 298s 298s Settings: 298s threads: 8 298s k: 31 298s deterministic: true 298s toss error reads: false 298s passes: 1 298s bits per cell: 16 298s cells: 806.44M 298s hashes: 3 298s base min quality: 5 298s kmer min prob: 0.5 298s 298s target depth: 100 298s min depth: 5 298s max depth: 100 298s min good kmers: 15 298s depth percentile: 54.0 298s ignore dupe kmers: true 298s fix spikes: false 298s histogram length: 65536 298s 298s Made hash table: hashes = 3 mem = 1.50 GB cells = 806.41M used = 0.000% 298s 298s Estimated unique kmers: 0 298s 298s Table creation time: 0.315 seconds. 298s Started output threads. 298s Started output threads. 298s Table read time: 0.003 seconds. 0.00 kb/sec 298s Total reads in: 0 NaN% Kept 298s Total bases in: 0 NaN% Kept 298s Error reads in: 0 NaN% 298s Error type 1: 0 NaN% 298s Error type 2: 0 NaN% 298s Error type 3: 0 NaN% 298s Total kmers counted: 0 298s Total unique kmer count: 0 298s Includes forward kmers only. 298s The unique kmer estimate can be more accurate than the unique count, if the tables are very full. 298s The most accurate value is the greater of the two. 298s 298s Percent unique: NaN% 298s Depth average: NaN (unique kmers) 298s Depth median: 0 (unique kmers) 298s Depth standard deviation: NaN (unique kmers) 298s Corrected depth average: NaN 298s 298s Depth average: NaN (all kmers) 298s Depth median: 0 (all kmers) 298s Depth standard deviation: 0.00 (all kmers) 298s 298s Approx. read depth median: NaN 298s 298s Removing temp files. 298s 298s Total time: 1.478 seconds. 0.13 kb/sec 301s test -r out3.fastq 301s test -r outt.fastq 301s test -r hist.plt 301s bbnorm.sh in=illumina_full_range_original_illumina.fastq qin=64 \ 301s out=out4.fastq outt=outt2.fastq hist=hist2.plt 301s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 301s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.KmerNormalize bits=32 in=illumina_full_range_original_illumina.fastq qin=64 out=out4.fastq outt=outt2.fastq hist=hist2.plt 301s Executing jgi.KmerNormalize [bits=32, in=illumina_full_range_original_illumina.fastq, qin=64, out=out4.fastq, outt=outt2.fastq, hist=hist2.plt] 301s 301s 301s *********** Pass 1 ********** 301s 301s 301s Settings: 301s threads: 8 301s k: 31 301s deterministic: true 301s toss error reads: false 301s passes: 1 301s bits per cell: 16 301s cells: 806.44M 301s hashes: 3 301s base min quality: 5 301s kmer min prob: 0.5 301s 301s target depth: 400 301s min depth: 3 301s max depth: 500 301s min good kmers: 15 301s depth percentile: 64.8 301s ignore dupe kmers: true 301s fix spikes: false 301s histogram length: 65536 301s print zero cov: false 301s 302s Made hash table: hashes = 3 mem = 1.50 GB cells = 806.41M used = 0.000% 302s 302s Estimated unique kmers: 7 302s 302s Table creation time: 0.615 seconds. 302s Started output threads. 302s Started output threads. 302s Table read time: 0.015 seconds. 8.23 kb/sec 302s Total reads in: 2 0.000% Kept 302s Total bases in: 126 0.000% Kept 302s Error reads in: 2 100.000% 302s Error type 1: 2 100.000% 302s Error type 2: 0 0.000% 302s Error type 3: 0 0.000% 302s 302s Wrote histogram to hist2.plt 302s Total kmers counted: 66 302s Total unique kmer count: 66 302s Includes forward kmers only. 302s The unique kmer estimate can be more accurate than the unique count, if the tables are very full. 302s The most accurate value is the greater of the two. 302s 302s Percent unique: 100.00% 302s Depth average: 1.00 (unique kmers) 302s Depth median: 1 (unique kmers) 302s Depth standard deviation: 0.00 (unique kmers) 302s Corrected depth average: 0.00 302s 302s Depth average: 1.00 (all kmers) 302s Depth median: 1 (all kmers) 302s Depth standard deviation: 0.00 (all kmers) 302s 302s Approx. read depth median: 1.91 302s 302s *********** Pass 2 ********** 302s 302s 302s Settings: 302s threads: 8 302s k: 31 302s deterministic: true 302s toss error reads: false 302s passes: 1 302s bits per cell: 16 302s cells: 806.44M 302s hashes: 3 302s base min quality: 5 302s kmer min prob: 0.5 302s 302s target depth: 100 302s min depth: 5 302s max depth: 100 302s min good kmers: 15 302s depth percentile: 54.0 302s ignore dupe kmers: true 302s fix spikes: false 302s histogram length: 65536 302s 303s Made hash table: hashes = 3 mem = 1.50 GB cells = 806.41M used = 0.000% 303s 303s Estimated unique kmers: 0 303s 303s Table creation time: 0.314 seconds. 303s Started output threads. 303s Started output threads. 303s Table read time: 0.003 seconds. 0.00 kb/sec 303s Total reads in: 0 NaN% Kept 303s Total bases in: 0 NaN% Kept 303s Error reads in: 0 NaN% 303s Error type 1: 0 NaN% 303s Error type 2: 0 NaN% 303s Error type 3: 0 NaN% 303s Total kmers counted: 0 303s Total unique kmer count: 0 303s Includes forward kmers only. 303s The unique kmer estimate can be more accurate than the unique count, if the tables are very full. 303s The most accurate value is the greater of the two. 303s 303s Percent unique: NaN% 303s Depth average: NaN (unique kmers) 303s Depth median: 0 (unique kmers) 303s Depth standard deviation: NaN (unique kmers) 303s Corrected depth average: NaN 303s 303s Depth average: NaN (all kmers) 303s Depth median: 0 (all kmers) 303s Depth standard deviation: 0.00 (all kmers) 303s 303s Approx. read depth median: NaN 303s 303s Removing temp files. 303s 303s Total time: 1.425 seconds. 0.09 kb/sec 306s test -r out4.fastq 306s test -r outt2.fastq 306s test -r hist2.plt 306s autopkgtest [18:44:59]: test run-unit-test: -----------------------] 310s run-unit-test PASS 310s autopkgtest [18:45:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 314s autopkgtest [18:45:07]: @@@@@@@@@@@@@@@@@@@@ summary 314s run-unit-test PASS