0s autopkgtest [11:02:10]: starting date and time: 2024-03-23 11:02:10+0000
  0s autopkgtest [11:02:10]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [11:02:10]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7j0yyscu/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed --apt-upgrade bbmap --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openjdk-23/23~14ea-1build2 openjdk-21/21.0.3~7ea-1' -- lxd -r lxd-armhf-10.145.243.125 lxd-armhf-10.145.243.125:autopkgtest/ubuntu/noble/armhf
 26s autopkgtest [11:02:36]: testbed dpkg architecture: armhf
 28s autopkgtest [11:02:38]: testbed apt version: 2.7.12
 28s autopkgtest [11:02:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 35s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 35s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 36s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
 36s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
 36s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4029 kB]
 36s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [629 kB]
 36s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B]
 36s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [1372 B]
 36s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B]
 36s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [4048 kB]
 36s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B]
 36s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf Packages [48.4 kB]
 36s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B]
 39s Fetched 9442 kB in 2s (5393 kB/s)
 39s Reading package lists...
 47s tee: /proc/self/fd/2: Permission denied
 69s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
 69s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
 69s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
 69s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
 70s Reading package lists...
 70s Reading package lists...
 71s Building dependency tree...
 71s Reading state information...
 71s Calculating upgrade...
 72s The following packages were automatically installed and are no longer required:
 72s   linux-headers-6.8.0-11 python3-lib2to3
 72s Use 'apt autoremove' to remove them.
 72s The following packages will be REMOVED:
 72s   libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1
 72s   libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11
 72s   libhogweed6 libmagic1 libnetplan0 libnettle8 libnpth0 libnvme1 libparted2
 72s   libpcap0.8 libperl5.38 libpng16-16 libpsl5 libreadline8 libreiserfscore0
 72s   libssl3 libtirpc3 libuv1 linux-headers-6.8.0-11-generic python3-distutils
 72s The following NEW packages will be installed:
 72s   libapt-pkg6.0t64 libarchive13t64 libatm1t64 libcurl3t64-gnutls libcurl4t64
 72s   libdb5.3t64 libelf1t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64
 72s   libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 libmagic1t64
 72s   libnetplan1 libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64
 72s   libpcap0.8t64 libperl5.38t64 libpng16-16t64 libpsl5t64 libreadline8t64
 72s   libreiserfscore0t64 libssl3t64 libtirpc3t64 libuv1t64 linux-headers-6.8.0-20
 72s   linux-headers-6.8.0-20-generic xdg-user-dirs
 72s The following packages have been kept back:
 72s   multipath-tools
 72s The following packages will be upgraded:
 72s   apparmor apt apt-utils bind9-dnsutils bind9-host bind9-libs binutils
 72s   binutils-arm-linux-gnueabihf binutils-common bolt bsdextrautils bsdutils
 72s   btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon
 72s   dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base
 72s   dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp
 72s   fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0
 72s   gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv
 72s   groff-base ibverbs-providers inetutils-telnet info initramfs-tools
 72s   initramfs-tools-bin initramfs-tools-core install-info iproute2 jq keyboxd
 72s   kmod kpartx krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils
 72s   libblkid1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
 72s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
 72s   libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 libc-bin libc6 libcap-ng0
 72s   libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3
 72s   libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7
 72s   libexpat1 libfdisk1 libfido2-1 libftdi1-2 libfwupd2 libgcc-s1
 72s   libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 libgudev-1.0-0
 72s   libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0
 72s   libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0
 72s   libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc
 72s   libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2
 72s   libnss-systemd libpam-modules libpam-modules-bin libpam-runtime
 72s   libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0
 72s   libpolkit-gobject-1-0 libprotobuf-c1 libpython3-stdlib libpython3.11-minimal
 72s   libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libqmi-glib5
 72s   libqmi-proxy libqrtr-glib0 librtmp1 libsasl2-2 libsasl2-modules
 72s   libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage2
 72s   libsframe1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssh-4 libstdc++6
 72s   libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl
 72s   libtirpc-common libudev1 libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1
 72s   libxml2 libxmlb2 libxmuu1 linux-headers-generic locales logsave lshw lsof
 72s   man-db mount mtr-tiny netplan-generator netplan.io openssh-client
 72s   openssh-server openssh-sftp-server openssl parted perl perl-base
 72s   perl-modules-5.38 pinentry-curses plymouth plymouth-theme-ubuntu-text psmisc
 72s   python-apt-common python3 python3-apt python3-cryptography python3-dbus
 72s   python3-gdbm python3-gi python3-lib2to3 python3-minimal python3-netplan
 72s   python3-pkg-resources python3-pyrsistent python3-setuptools
 72s   python3-typing-extensions python3-yaml python3.11 python3.11-minimal
 72s   python3.12 python3.12-minimal readline-common rsync shared-mime-info sudo
 72s   systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd tcpdump
 72s   telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 usb.ids
 72s   util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g
 72s 233 upgraded, 32 newly installed, 31 to remove and 1 not upgraded.
 72s Need to get 106 MB of archives.
 72s After this operation, 84.4 MB of additional disk space will be used.
 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdutils armhf 1:2.39.3-9ubuntu2 [102 kB]
 72s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-14-base armhf 14-20240315-1ubuntu1 [47.0 kB]
 72s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgcc-s1 armhf 14-20240315-1ubuntu1 [41.5 kB]
 72s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libstdc++6 armhf 14-20240315-1ubuntu1 [714 kB]
 73s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libc6 armhf 2.39-0ubuntu6 [2827 kB]
 73s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbrotli1 armhf 1.1.0-2build1 [319 kB]
 73s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-5.1ubuntu1 [119 kB]
 73s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5-3 armhf 1.20.1-5.1ubuntu1 [321 kB]
 73s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkrb5support0 armhf 1.20.1-5.1ubuntu1 [31.4 kB]
 73s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libk5crypto3 armhf 1.20.1-5.1ubuntu1 [78.6 kB]
 73s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
 73s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf zlib1g armhf 1:1.3.dfsg-3.1ubuntu1 [49.2 kB]
 73s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build6 [51.3 kB]
 73s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udisks2 armhf 2.10.1-6 [276 kB]
 73s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudisks2-0 armhf 2.10.1-6 [143 kB]
 73s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblkid1 armhf 2.39.3-9ubuntu2 [160 kB]
 73s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.6.0-0.2 [117 kB]
 73s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kmod armhf 31+20240202-2ubuntu4 [91.8 kB]
 73s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libkmod2 armhf 31+20240202-2ubuntu4 [44.9 kB]
 73s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 255.4-1ubuntu5 [103 kB]
 73s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-timesyncd armhf 255.4-1ubuntu5 [36.0 kB]
 73s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB]
 73s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit-common all 1:3.1.2-2.1 [5674 B]
 73s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcap-ng0 armhf 0.8.4-2build1 [13.5 kB]
 73s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libaudit1 armhf 1:3.1.2-2.1 [44.3 kB]
 73s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam0g armhf 1.5.3-5ubuntu3 [62.0 kB]
 73s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libselinux1 armhf 3.5-2ubuntu1 [70.9 kB]
 73s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4t64 armhf 8.5.0-2ubuntu7 [296 kB]
 73s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf curl armhf 8.5.0-2ubuntu7 [219 kB]
 73s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
 73s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf wget armhf 1.21.4-1ubuntu2 [317 kB]
 73s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tnftp armhf 20230507-2build1 [98.6 kB]
 73s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcap0.8t64 armhf 1.10.4-4.1ubuntu1 [137 kB]
 73s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main armhf tcpdump armhf 4.99.4-3ubuntu2 [425 kB]
 73s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 255.4-1ubuntu5 [2009 kB]
 73s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-resolved armhf 255.4-1ubuntu5 [289 kB]
 73s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main armhf sudo armhf 1.9.15p5-3ubuntu3 [936 kB]
 73s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main armhf rsync armhf 3.2.7-1build1 [413 kB]
 73s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-cryptography armhf 41.0.7-4build2 [788 kB]
 73s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.13-0ubuntu2 [975 kB]
 73s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu11 [35.5 kB]
 73s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-client armhf 1:9.6p1-3ubuntu11 [890 kB]
 73s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssh-server armhf 1:9.6p1-3ubuntu11 [503 kB]
 73s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB]
 74s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-6.8.0-20-generic armhf 6.8.0-20.20 [1287 kB]
 74s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main armhf linux-headers-generic armhf 6.8.0-20.20+1 [9610 B]
 74s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3t64 armhf 3.0.13-0ubuntu2 [1558 kB]
 74s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnss-systemd armhf 255.4-1ubuntu5 [148 kB]
 74s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 255.4-1ubuntu5 [166 kB]
 74s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 255.4-1ubuntu5 [3502 kB]
 74s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main armhf udev armhf 255.4-1ubuntu5 [1852 kB]
 74s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 255.4-1ubuntu5 [11.9 kB]
 74s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-systemd armhf 255.4-1ubuntu5 [216 kB]
 74s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 255.4-1ubuntu5 [410 kB]
 74s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu3 [47.0 kB]
 74s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-modules armhf 1.5.3-5ubuntu3 [261 kB]
 74s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB]
 74s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-user-session armhf 1.14.10-4ubuntu2 [9962 B]
 74s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapparmor1 armhf 4.0.0-beta3-0ubuntu2 [45.0 kB]
 74s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libexpat1 armhf 2.6.1-2 [65.9 kB]
 74s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB]
 74s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-bin armhf 1.14.10-4ubuntu2 [37.1 kB]
 74s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus armhf 1.14.10-4ubuntu2 [28.1 kB]
 74s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dbus-daemon armhf 1.14.10-4ubuntu2 [109 kB]
 74s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu2 [190 kB]
 74s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmount1 armhf 2.39.3-9ubuntu2 [171 kB]
 74s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libseccomp2 armhf 2.5.5-1ubuntu2 [49.5 kB]
 74s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdevmapper1.02.1 armhf 2:1.02.185-3ubuntu2 [135 kB]
 74s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuuid1 armhf 2.39.3-9ubuntu2 [34.4 kB]
 74s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu2 [238 kB]
 74s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfdisk1 armhf 2.39.3-9ubuntu2 [196 kB]
 74s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mount armhf 2.39.3-9ubuntu2 [134 kB]
 74s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-utils3 armhf 3.1.0-1build1 [16.9 kB]
 74s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libvolume-key1 armhf 0.3.12-7build1 [38.4 kB]
 74s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjcat1 armhf 0.2.0-2build2 [30.4 kB]
 74s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main armhf parted armhf 3.6-3.1build2 [39.4 kB]
 74s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libparted2t64 armhf 3.6-3.1build2 [143 kB]
 74s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12 armhf 3.12.2-4build3 [645 kB]
 75s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.12-minimal armhf 3.12.2-4build3 [1942 kB]
 75s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-stdlib armhf 3.12.2-4build3 [1906 kB]
 75s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.12-minimal armhf 3.12.2-4build3 [816 kB]
 75s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-5ubuntu1 [19.0 kB]
 75s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11 armhf 3.11.8-1build4 [589 kB]
 75s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3.11-minimal armhf 3.11.8-1build4 [1795 kB]
 75s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-stdlib armhf 3.11.8-1build4 [1810 kB]
 75s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3.11-minimal armhf 3.11.8-1build4 [826 kB]
 75s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.45.1-1ubuntu1 [599 kB]
 75s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-iconv-perl armhf 1.7-8build2 [12.7 kB]
 75s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtext-charwidth-perl armhf 0.04-11build2 [8962 B]
 75s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
 75s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-6 [661 kB]
 75s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gdbm armhf 3.12.2-3ubuntu2 [17.1 kB]
 75s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-3build4 [1196 kB]
 76s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm6t64 armhf 1.23-5.1 [30.3 kB]
 76s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgdbm-compat4t64 armhf 1.23-5.1 [6208 B]
 76s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libperl5.38t64 armhf 5.38.2-3.2 [4101 kB]
 76s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl armhf 5.38.2-3.2 [231 kB]
 76s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main armhf perl-base armhf 5.38.2-3.2 [1671 kB]
 76s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblocale-gettext-perl armhf 1.07-6ubuntu4 [15.0 kB]
 76s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnettle8t64 armhf 3.9.1-2.2 [187 kB]
 76s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libhogweed6t64 armhf 3.9.1-2.2 [187 kB]
 76s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgnutls30t64 armhf 3.8.3-1.1ubuntu2 [1046 kB]
 77s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap2 armhf 2.6.7+dfsg-1~exp1ubuntu6 [172 kB]
 77s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu7 [290 kB]
 77s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf shared-mime-info armhf 2.4-1build1 [470 kB]
 77s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-girepository-2.0 armhf 1.79.1-1ubuntu6 [24.8 kB]
 77s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gir1.2-glib-2.0 armhf 2.79.3-3ubuntu5 [182 kB]
 77s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgirepository-1.0-1 armhf 1.79.1-1ubuntu6 [106 kB]
 77s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-gi armhf 3.47.0-3build1 [219 kB]
 77s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-dbus armhf 1.3.2-5build2 [94.7 kB]
 77s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnetplan1 armhf 1.0-1 [113 kB]
 77s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-netplan armhf 1.0-1 [22.5 kB]
 77s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan-generator armhf 1.0-1 [58.7 kB]
 77s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-bin armhf 0.142ubuntu23 [20.3 kB]
 77s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools-core all 0.142ubuntu23 [50.1 kB]
 77s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main armhf initramfs-tools all 0.142ubuntu23 [9058 B]
 77s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf netplan.io armhf 1.0-1 [64.3 kB]
 77s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmlb2 armhf 0.3.15-1build1 [57.0 kB]
 77s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqrtr-glib0 armhf 1.2.2-1ubuntu3 [15.4 kB]
 77s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-glib5 armhf 1.35.2-0ubuntu1 [908 kB]
 77s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libqmi-proxy armhf 1.35.2-0ubuntu1 [5732 B]
 77s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-agent-1-0 armhf 124-1ubuntu1 [15.3 kB]
 77s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpolkit-gobject-1-0 armhf 124-1ubuntu1 [44.1 kB]
 77s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0t64 armhf 2.79.3-3ubuntu5 [1414 kB]
 77s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfwupd2 armhf 1.9.15-2 [123 kB]
 77s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libarchive13t64 armhf 3.7.2-1.1ubuntu2 [330 kB]
 77s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fwupd armhf 1.9.15-2 [4350 kB]
 77s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.14 [210 kB]
 77s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0t64 armhf 2.7.14 [986 kB]
 78s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.14 [1368 kB]
 78s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client-l10n armhf 31.2.1 [19.4 kB]
 78s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ubuntu-pro-client armhf 31.2.1 [216 kB]
 78s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf keyboxd armhf 2.4.4-2ubuntu15 [111 kB]
 78s Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libnpth0t64 armhf 1.6-3.1 [6940 B]
 78s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgv armhf 2.4.4-2ubuntu15 [224 kB]
 78s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg armhf 2.4.4-2ubuntu15 [524 kB]
 78s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-wks-client armhf 2.4.4-2ubuntu15 [87.4 kB]
 78s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-utils armhf 2.4.4-2ubuntu15 [158 kB]
 78s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpg-agent armhf 2.4.4-2ubuntu15 [235 kB]
 78s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgsm armhf 2.4.4-2ubuntu15 [241 kB]
 78s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreadline8t64 armhf 8.2-4 [129 kB]
 78s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gawk armhf 1:5.2.1-2build2 [415 kB]
 78s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main armhf fdisk armhf 2.39.3-9ubuntu2 [135 kB]
 78s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gpgconf armhf 2.4.4-2ubuntu15 [115 kB]
 78s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dirmngr armhf 2.4.4-2ubuntu15 [346 kB]
 78s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg all 2.4.4-2ubuntu15 [359 kB]
 78s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-apt armhf 2.7.7 [162 kB]
 78s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main armhf pinentry-curses armhf 1.2.1-3ubuntu4 [36.7 kB]
 78s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-yaml armhf 6.0.1-2build1 [117 kB]
 78s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python-apt-common all 2.7.7 [19.8 kB]
 78s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
 78s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
 78s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg armhf 1.22.6ubuntu4 [1229 kB]
 78s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-minimal armhf 3.12.2-0ubuntu1 [27.1 kB]
 78s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3 armhf 3.12.2-0ubuntu1 [24.1 kB]
 78s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpython3-stdlib armhf 3.12.2-0ubuntu1 [9802 B]
 78s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsmartcols1 armhf 2.39.3-9ubuntu2 [117 kB]
 78s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bsdextrautils armhf 2.39.3-9ubuntu2 [78.7 kB]
 78s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3build1 [946 kB]
 78s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main armhf readline-common all 8.2-4 [56.4 kB]
 78s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgpgme11t64 armhf 1.18.0-4.1ubuntu3 [120 kB]
 78s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-crypto3 armhf 3.1.0-1build1 [20.3 kB]
 78s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B]
 78s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu2 [21.9 kB]
 78s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dhcpcd-base armhf 1:10.0.6-1ubuntu2 [186 kB]
 78s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-fs3 armhf 3.1.0-1build1 [34.4 kB]
 78s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libreiserfscore0t64 armhf 1:3.6.27-7.1 [66.2 kB]
 78s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main armhf btrfs-progs armhf 6.6.3-1.1build1 [852 kB]
 78s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu2 [201 kB]
 78s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu2 [571 kB]
 78s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-loop3 armhf 3.1.0-1build1 [6502 B]
 78s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-mdraid3 armhf 3.1.0-1build1 [13.3 kB]
 78s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-nvme3 armhf 3.1.0-1build1 [17.5 kB]
 78s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnvme1t64 armhf 1.8-3 [67.5 kB]
 78s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-part3 armhf 3.1.0-1build1 [16.4 kB]
 78s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev-swap3 armhf 3.1.0-1build1 [8894 B]
 78s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libblockdev3 armhf 3.1.0-1build1 [42.9 kB]
 78s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgudev-1.0-0 armhf 1:238-3ubuntu2 [13.6 kB]
 78s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.3ubuntu2 [595 kB]
 78s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbpf1 armhf 1:1.3.0-2build1 [146 kB]
 78s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main armhf iproute2 armhf 6.1.0-1ubuntu5 [1060 kB]
 78s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libelf1t64 armhf 0.190-1.1build2 [49.9 kB]
 78s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc-common all 1.3.4+ds-1.1 [8018 B]
 78s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lsof armhf 4.95.0-1build2 [248 kB]
 78s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnsl2 armhf 1.3.0-3build2 [36.5 kB]
 78s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtirpc3t64 armhf 1.3.4+ds-1.1 [73.2 kB]
 79s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-proxy armhf 1.31.2-0ubuntu2 [5748 B]
 79s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmbim-glib4 armhf 1.31.2-0ubuntu2 [216 kB]
 79s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-common all 1.8.0-2build1 [4210 B]
 79s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjson-glib-1.0-0 armhf 1.8.0-2build1 [61.2 kB]
 79s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.59.0-1build1 [68.1 kB]
 79s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssh-4 armhf 0.10.6-2build1 [169 kB]
 79s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libusb-1.0-0 armhf 2:1.0.27-1 [48.7 kB]
 79s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libgusb2 armhf 0.4.8-1build1 [34.6 kB]
 79s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmm-glib0 armhf 1.23.4-0ubuntu1 [214 kB]
 79s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libprotobuf-c1 armhf 1.4.1-1ubuntu3 [17.7 kB]
 79s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg1-5ubuntu1 [49.7 kB]
 79s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libibverbs1 armhf 50.0-2build1 [57.9 kB]
 79s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfido2-1 armhf 1.14.0-1build1 [75.8 kB]
 79s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main armhf coreutils armhf 9.4-3ubuntu3 [1280 kB]
 79s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main armhf util-linux armhf 2.39.3-9ubuntu2 [1216 kB]
 79s Get:202 http://ftpmaster.internal/ubuntu noble/main armhf libc-bin armhf 2.39-0ubuntu6 [530 kB]
 79s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-3 [21.1 kB]
 79s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-3 [307 kB]
 79s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1t64 armhf 1:5.45-3 [81.4 kB]
 79s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libplymouth5 armhf 24.004.60-1ubuntu6 [140 kB]
 79s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16t64 armhf 1.6.43-3 [166 kB]
 80s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-host armhf 1:9.18.24-0ubuntu3 [47.4 kB]
 80s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu3 [149 kB]
 80s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bind9-libs armhf 1:9.18.24-0ubuntu3 [1148 kB]
 80s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libuv1t64 armhf 1.48.0-1.1 [82.9 kB]
 80s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main armhf uuid-runtime armhf 2.39.3-9ubuntu2 [41.7 kB]
 80s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebconfclient0 armhf 0.271ubuntu2 [10.8 kB]
 80s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage-common all 3.5-1build4 [10.1 kB]
 80s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsemanage2 armhf 3.5-1build4 [84.5 kB]
 80s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main armhf install-info armhf 7.1-3build1 [60.5 kB]
 80s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gcc-13-base armhf 13.2.0-19ubuntu1 [47.7 kB]
 80s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu2 [14.7 kB]
 80s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dmsetup armhf 2:1.02.185-3ubuntu2 [81.1 kB]
 80s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main armhf eject armhf 2.39.3-9ubuntu2 [43.2 kB]
 80s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main armhf krb5-locales all 1.20.1-5.1ubuntu1 [13.9 kB]
 80s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
 80s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libslang2 armhf 2.3.3-3build1 [478 kB]
 80s Get:224 http://ftpmaster.internal/ubuntu noble/main armhf locales all 2.39-0ubuntu6 [4232 kB]
 80s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-tiny armhf 2:9.1.0016-1ubuntu5 [665 kB]
 80s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main armhf vim-common all 2:9.1.0016-1ubuntu5 [385 kB]
 80s Get:227 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1 [17.3 kB]
 80s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xxd armhf 2:9.1.0016-1ubuntu5 [62.4 kB]
 80s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apparmor armhf 4.0.0-beta3-0ubuntu2 [562 kB]
 80s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ftp all 20230507-2build1 [4724 B]
 80s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main armhf inetutils-telnet armhf 2:2.5-3ubuntu3 [90.7 kB]
 80s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main armhf info armhf 7.1-3build1 [127 kB]
 80s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxmuu1 armhf 2:1.1.3-3build1 [8004 B]
 80s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main armhf lshw armhf 02.19.git.2021.06.19.996aaad9c7-2build2 [310 kB]
 80s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mtr-tiny armhf 0.95-1.1build1 [51.7 kB]
 80s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu6 [9818 B]
 80s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main armhf plymouth armhf 24.004.60-1ubuntu6 [142 kB]
 80s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main armhf psmisc armhf 23.7-1 [176 kB]
 80s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main armhf telnet all 0.17+2.5-3ubuntu3 [3682 B]
 80s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main armhf usb.ids all 2024.03.18-1 [223 kB]
 80s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.6.0-0.2 [271 kB]
 80s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf0 armhf 2.42-4ubuntu1 [87.7 kB]
 80s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libctf-nobfd0 armhf 2.42-4ubuntu1 [88.0 kB]
 80s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.42-4ubuntu1 [2925 kB]
 80s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libbinutils armhf 2.42-4ubuntu1 [464 kB]
 80s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils armhf 2.42-4ubuntu1 [3078 B]
 80s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main armhf binutils-common armhf 2.42-4ubuntu1 [217 kB]
 80s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsframe1 armhf 2.42-4ubuntu1 [13.1 kB]
 80s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bolt armhf 0.9.6-2build1 [138 kB]
 80s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu2 [214 kB]
 80s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main armhf dpkg-dev all 1.22.6ubuntu4 [1074 kB]
 80s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdpkg-perl all 1.22.6ubuntu4 [268 kB]
 80s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main armhf gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB]
 80s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ibverbs-providers armhf 50.0-2build1 [27.4 kB]
 81s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main armhf jq armhf 1.7.1-3 [65.2 kB]
 81s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libjq1 armhf 1.7.1-3 [156 kB]
 81s Get:257 http://ftpmaster.internal/ubuntu noble/main armhf libatm1t64 armhf 1:2.5.1-5.1 [20.0 kB]
 81s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-9build1 [82.3 kB]
 81s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libftdi1-2 armhf 1.5-6build4 [25.7 kB]
 81s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB]
 81s Get:261 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsasl2-modules armhf 2.1.28+dfsg1-5ubuntu1 [61.3 kB]
 81s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-lib2to3 all 3.12.2-3ubuntu2 [79.3 kB]
 81s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-pyrsistent armhf 0.20.0-1build1 [53.0 kB]
 81s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main armhf python3-typing-extensions all 4.10.0-1 [60.7 kB]
 81s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main armhf kpartx armhf 0.9.4-5ubuntu6 [31.5 kB]
 82s Preconfiguring packages ...
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 82s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_armhf.deb ...
 82s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ...
 82s Setting up bsdutils (1:2.39.3-9ubuntu2) ...
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 82s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_armhf.deb ...
 82s Unpacking gcc-14-base:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
 82s Setting up gcc-14-base:armhf (14-20240315-1ubuntu1) ...
 83s (Reading database ... 
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 83s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_armhf.deb ...
 83s Unpacking libgcc-s1:armhf (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ...
 83s Setting up libgcc-s1:armhf (14-20240315-1ubuntu1) ...
 83s (Reading database ... 
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 83s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_armhf.deb ...
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 83s Setting up libstdc++6:armhf (14-20240315-1ubuntu1) ...
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 83s Preparing to unpack .../libc6_2.39-0ubuntu6_armhf.deb ...
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 83s Setting up libc6:armhf (2.39-0ubuntu6) ...
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 84s Preparing to unpack .../0-libbrotli1_1.1.0-2build1_armhf.deb ...
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 84s Preparing to unpack .../4-libk5crypto3_1.20.1-5.1ubuntu1_armhf.deb ...
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 84s Preparing to unpack .../5-libcom-err2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
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 84s Preparing to unpack .../6-zlib1g_1%3a1.3.dfsg-3.1ubuntu1_armhf.deb ...
 84s Unpacking zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ...
 84s Setting up zlib1g:armhf (1:1.3.dfsg-3.1ubuntu1) ...
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 84s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_armhf.deb ...
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 85s Setting up libblkid1:armhf (2.39.3-9ubuntu2) ...
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 85s Preparing to unpack .../liblzma5_5.6.0-0.2_armhf.deb ...
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 85s Setting up liblzma5:armhf (5.6.0-0.2) ...
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 85s Preparing to unpack .../0-kmod_31+20240202-2ubuntu4_armhf.deb ...
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 85s dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty
 85s Preparing to unpack .../1-libkmod2_31+20240202-2ubuntu4_armhf.deb ...
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 85s Preparing to unpack .../3-systemd-timesyncd_255.4-1ubuntu5_armhf.deb ...
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 85s Preparing to unpack .../4-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ...
 85s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
 85s Preparing to unpack .../5-libaudit-common_1%3a3.1.2-2.1_all.deb ...
 85s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ...
 85s Setting up libaudit-common (1:3.1.2-2.1) ...
 85s (Reading database ... 
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 85s Preparing to unpack .../libcap-ng0_0.8.4-2build1_armhf.deb ...
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 85s Setting up libcap-ng0:armhf (0.8.4-2build1) ...
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 85s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_armhf.deb ...
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 85s Setting up libaudit1:armhf (1:3.1.2-2.1) ...
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 85s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_armhf.deb ...
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 85s Setting up libpam0g:armhf (1.5.3-5ubuntu3) ...
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 85s Preparing to unpack .../libselinux1_3.5-2ubuntu1_armhf.deb ...
 85s Unpacking libselinux1:armhf (3.5-2ubuntu1) over (3.5-2build1) ...
 85s Setting up libselinux1:armhf (3.5-2ubuntu1) ...
 85s dpkg: libcurl4:armhf: dependency problems, but removing anyway as you requested:
 85s  curl depends on libcurl4 (= 8.5.0-2ubuntu2).
 85s 
 86s (Reading database ... 
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 86s Removing libcurl4:armhf (8.5.0-2ubuntu2) ...
 86s Selecting previously unselected package libcurl4t64:armhf.
 86s (Reading database ... 
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 86s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_armhf.deb ...
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 86s Preparing to unpack .../curl_8.5.0-2ubuntu7_armhf.deb ...
 86s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
 86s dpkg: libpsl5:armhf: dependency problems, but removing anyway as you requested:
 86s  wget depends on libpsl5 (>= 0.16.0).
 86s  libcurl3-gnutls:armhf depends on libpsl5 (>= 0.16.0).
 86s 
 86s (Reading database ... 
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 86s Removing libpsl5:armhf (0.21.2-1build1) ...
 86s Selecting previously unselected package libpsl5t64:armhf.
 86s (Reading database ... 
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 86s Preparing to unpack .../libpsl5t64_0.21.2-1.1_armhf.deb ...
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 86s Preparing to unpack .../wget_1.21.4-1ubuntu2_armhf.deb ...
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 86s Preparing to unpack .../tnftp_20230507-2build1_armhf.deb ...
 86s Unpacking tnftp (20230507-2build1) over (20230507-2) ...
 86s dpkg: libpcap0.8:armhf: dependency problems, but removing anyway as you requested:
 86s  tcpdump depends on libpcap0.8 (>= 1.9.1).
 86s 
 86s (Reading database ... 
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 86s Removing libpcap0.8:armhf (1.10.4-4ubuntu3) ...
 86s Selecting previously unselected package libpcap0.8t64:armhf.
 86s (Reading database ... 
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 86s Preparing to unpack .../00-libpcap0.8t64_1.10.4-4.1ubuntu1_armhf.deb ...
 86s Unpacking libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ...
 86s Preparing to unpack .../01-tcpdump_4.99.4-3ubuntu2_armhf.deb ...
 86s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ...
 86s Preparing to unpack .../02-libsystemd-shared_255.4-1ubuntu5_armhf.deb ...
 86s Unpacking libsystemd-shared:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 86s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_armhf.deb ...
 86s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 86s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_armhf.deb ...
 86s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ...
 86s Preparing to unpack .../05-rsync_3.2.7-1build1_armhf.deb ...
 86s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ...
 86s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_armhf.deb ...
 87s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ...
 87s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_armhf.deb ...
 87s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
 87s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
 87s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 87s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_armhf.deb ...
 87s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 87s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_armhf.deb ...
 87s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
 87s Selecting previously unselected package linux-headers-6.8.0-20.
 87s Preparing to unpack .../11-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ...
 87s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ...
 90s Selecting previously unselected package linux-headers-6.8.0-20-generic.
 90s Preparing to unpack .../12-linux-headers-6.8.0-20-generic_6.8.0-20.20_armhf.deb ...
 90s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
 91s Preparing to unpack .../13-linux-headers-generic_6.8.0-20.20+1_armhf.deb ...
 91s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
 92s (Reading database ... 
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 92s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ...
 92s dpkg: libssl3:armhf: dependency problems, but removing anyway as you requested:
 92s  systemd depends on libssl3 (>= 3.0.0).
 92s  libssh-4:armhf depends on libssl3 (>= 3.0.0).
 92s  libsasl2-modules:armhf depends on libssl3 (>= 3.0.0).
 92s  libsasl2-2:armhf depends on libssl3 (>= 3.0.0).
 92s  libpython3.12-minimal:armhf depends on libssl3 (>= 3.0.0).
 92s  libpython3.11-minimal:armhf depends on libssl3 (>= 3.0.0).
 92s  libnvme1 depends on libssl3 (>= 3.0.0).
 92s  libfido2-1:armhf depends on libssl3 (>= 3.0.0).
 92s  libcryptsetup12:armhf depends on libssl3 (>= 3.0.0).
 92s  dhcpcd-base depends on libssl3 (>= 3.0.0).
 92s  bind9-libs:armhf depends on libssl3 (>= 3.0.0).
 92s 
 92s Removing libssl3:armhf (3.0.10-1ubuntu4) ...
 92s Selecting previously unselected package libssl3t64:armhf.
 92s (Reading database ... 
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 92s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_armhf.deb ...
 92s Unpacking libssl3t64:armhf (3.0.13-0ubuntu2) ...
 92s Setting up libssl3t64:armhf (3.0.13-0ubuntu2) ...
 92s (Reading database ... 
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 92s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_armhf.deb ...
 92s Unpacking libnss-systemd:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 92s Preparing to unpack .../libudev1_255.4-1ubuntu5_armhf.deb ...
 92s Unpacking libudev1:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 93s Setting up libudev1:armhf (255.4-1ubuntu5) ...
 93s (Reading database ... 
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 93s Preparing to unpack .../systemd_255.4-1ubuntu5_armhf.deb ...
 93s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 93s Preparing to unpack .../udev_255.4-1ubuntu5_armhf.deb ...
 93s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 94s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_armhf.deb ...
 94s Unpacking libsystemd0:armhf (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
 94s Setting up libsystemd0:armhf (255.4-1ubuntu5) ...
 94s Setting up libkmod2:armhf (31+20240202-2ubuntu4) ...
 94s Setting up libsystemd-shared:armhf (255.4-1ubuntu5) ...
 94s Setting up systemd-dev (255.4-1ubuntu5) ...
 94s Setting up systemd (255.4-1ubuntu5) ...
 94s (Reading database ... 
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 96s Preparing to unpack .../0-libcryptsetup12_2%3a2.7.0-1ubuntu2_armhf.deb ...
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 96s Removing libgpgme11:armhf (1.18.0-4ubuntu1) ...
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 98s Preparing to unpack .../11-libtext-iconv-perl_1.7-8build2_armhf.deb ...
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 98s Preparing to unpack .../13-perl-modules-5.38_5.38.2-3.2_all.deb ...
 98s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
 98s dpkg: libperl5.38:armhf: dependency problems, but removing anyway as you requested:
 98s  perl depends on libperl5.38 (= 5.38.2-3).
 98s 
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 98s Removing libperl5.38:armhf (5.38.2-3) ...
 98s dpkg: libdb5.3:armhf: dependency problems, but removing anyway as you requested:
 98s  iproute2 depends on libdb5.3.
 98s  apt-utils depends on libdb5.3.
 98s 
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 98s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_armhf.deb ...
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 98s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu2_armhf.deb ...
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 99s Removing libgdbm-compat4:armhf (1.23-5) ...
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 99s Setting up perl-base (5.38.2-3.2) ...
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 99s dpkg: libnettle8:armhf: dependency problems, but removing anyway as you requested:
 99s  libhogweed6:armhf depends on libnettle8.
 99s  libgnutls30:armhf depends on libnettle8 (>= 3.9~).
 99s  libcurl3-gnutls:armhf depends on libnettle8.
 99s  libarchive13:armhf depends on libnettle8.
 99s 
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 99s Removing libnettle8:armhf (3.9.1-2) ...
100s Selecting previously unselected package libnettle8t64:armhf.
100s (Reading database ... 
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100s Preparing to unpack .../libnettle8t64_3.9.1-2.2_armhf.deb ...
100s Unpacking libnettle8t64:armhf (3.9.1-2.2) ...
100s Setting up libnettle8t64:armhf (3.9.1-2.2) ...
100s dpkg: libhogweed6:armhf: dependency problems, but removing anyway as you requested:
100s  libgnutls30:armhf depends on libhogweed6 (>= 3.6).
100s 
100s (Reading database ... 
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100s Removing libhogweed6:armhf (3.9.1-2) ...
100s Selecting previously unselected package libhogweed6t64:armhf.
100s (Reading database ... 
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100s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_armhf.deb ...
100s Unpacking libhogweed6t64:armhf (3.9.1-2.2) ...
100s Setting up libhogweed6t64:armhf (3.9.1-2.2) ...
100s dpkg: libgnutls30:armhf: dependency problems, but removing anyway as you requested:
100s  libldap2:armhf depends on libgnutls30 (>= 3.8.2).
100s  libcurl3-gnutls:armhf depends on libgnutls30 (>= 3.8.2).
100s  fwupd depends on libgnutls30 (>= 3.7.3).
100s  dirmngr depends on libgnutls30 (>= 3.8.1).
100s  apt depends on libgnutls30 (>= 3.8.1).
100s 
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100s Removing libgnutls30:armhf (3.8.3-1ubuntu1) ...
100s Selecting previously unselected package libgnutls30t64:armhf.
100s (Reading database ... 
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100s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_armhf.deb ...
100s Unpacking libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
100s Setting up libgnutls30t64:armhf (3.8.3-1.1ubuntu2) ...
100s (Reading database ... 
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100s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu6_armhf.deb ...
100s Unpacking libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
100s dpkg: libcurl3-gnutls:armhf: dependency problems, but removing anyway as you requested:
100s  libfwupd2:armhf depends on libcurl3-gnutls (>= 7.63.0).
100s  fwupd depends on libcurl3-gnutls (>= 7.63.0).
100s 
100s (Reading database ... 
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100s Removing libcurl3-gnutls:armhf (8.5.0-2ubuntu2) ...
100s Selecting previously unselected package libcurl3t64-gnutls:armhf.
100s (Reading database ... 
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100s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu7_armhf.deb ...
100s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ...
100s Preparing to unpack .../01-shared-mime-info_2.4-1build1_armhf.deb ...
100s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ...
100s Preparing to unpack .../02-gir1.2-girepository-2.0_1.79.1-1ubuntu6_armhf.deb ...
100s Unpacking gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
100s Preparing to unpack .../03-gir1.2-glib-2.0_2.79.3-3ubuntu5_armhf.deb ...
100s Unpacking gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
100s Preparing to unpack .../04-libgirepository-1.0-1_1.79.1-1ubuntu6_armhf.deb ...
100s Unpacking libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) over (1.79.1-1) ...
100s Preparing to unpack .../05-python3-gi_3.47.0-3build1_armhf.deb ...
101s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ...
101s Preparing to unpack .../06-python3-dbus_1.3.2-5build2_armhf.deb ...
101s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ...
101s Selecting previously unselected package libnetplan1:armhf.
101s Preparing to unpack .../07-libnetplan1_1.0-1_armhf.deb ...
101s Unpacking libnetplan1:armhf (1.0-1) ...
101s Preparing to unpack .../08-python3-netplan_1.0-1_armhf.deb ...
101s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ...
101s Preparing to unpack .../09-netplan-generator_1.0-1_armhf.deb ...
101s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
101s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ...
101s Preparing to unpack .../10-initramfs-tools-bin_0.142ubuntu23_armhf.deb ...
101s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ...
101s Preparing to unpack .../11-initramfs-tools-core_0.142ubuntu23_all.deb ...
101s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ...
101s Preparing to unpack .../12-initramfs-tools_0.142ubuntu23_all.deb ...
101s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ...
101s Preparing to unpack .../13-netplan.io_1.0-1_armhf.deb ...
101s Unpacking netplan.io (1.0-1) over (0.107.1-3) ...
102s Preparing to unpack .../14-libxmlb2_0.3.15-1build1_armhf.deb ...
102s Unpacking libxmlb2:armhf (0.3.15-1build1) over (0.3.15-1) ...
102s Preparing to unpack .../15-libqrtr-glib0_1.2.2-1ubuntu3_armhf.deb ...
102s Unpacking libqrtr-glib0:armhf (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ...
102s Preparing to unpack .../16-libqmi-glib5_1.35.2-0ubuntu1_armhf.deb ...
102s Unpacking libqmi-glib5:armhf (1.35.2-0ubuntu1) over (1.34.0-2) ...
102s Preparing to unpack .../17-libqmi-proxy_1.35.2-0ubuntu1_armhf.deb ...
102s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ...
102s Preparing to unpack .../18-libpolkit-agent-1-0_124-1ubuntu1_armhf.deb ...
102s Unpacking libpolkit-agent-1-0:armhf (124-1ubuntu1) over (124-1) ...
102s Preparing to unpack .../19-libpolkit-gobject-1-0_124-1ubuntu1_armhf.deb ...
102s Unpacking libpolkit-gobject-1-0:armhf (124-1ubuntu1) over (124-1) ...
102s (Reading database ... 
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102s Removing libnetplan0:armhf (0.107.1-3) ...
102s dpkg: libglib2.0-0:armhf: dependency problems, but removing anyway as you requested:
102s  libmm-glib0:armhf depends on libglib2.0-0 (>= 2.62.0).
102s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
102s  libmbim-glib4:armhf depends on libglib2.0-0 (>= 2.56).
102s  libjson-glib-1.0-0:armhf depends on libglib2.0-0 (>= 2.75.3).
102s  libgusb2:armhf depends on libglib2.0-0 (>= 2.75.3).
102s  libgudev-1.0-0:armhf depends on libglib2.0-0 (>= 2.38.0).
102s  libfwupd2:armhf depends on libglib2.0-0 (>= 2.79.0).
102s  libblockdev3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-swap3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-part3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-nvme3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-mdraid3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-loop3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-fs3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  libblockdev-crypto3:armhf depends on libglib2.0-0 (>= 2.42.2).
102s  fwupd depends on libglib2.0-0 (>= 2.79.0).
102s  bolt depends on libglib2.0-0 (>= 2.56.0).
102s 
102s Removing libglib2.0-0:armhf (2.79.2-1~ubuntu1) ...
102s Selecting previously unselected package libglib2.0-0t64:armhf.
102s (Reading database ... 
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102s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_armhf.deb ...
102s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:armhf.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
102s removed '/var/lib/dpkg/info/libglib2.0-0:armhf.postrm'
102s Unpacking libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
102s Preparing to unpack .../libfwupd2_1.9.15-2_armhf.deb ...
102s Unpacking libfwupd2:armhf (1.9.15-2) over (1.9.14-1) ...
102s dpkg: libarchive13:armhf: dependency problems, but removing anyway as you requested:
102s  fwupd depends on libarchive13 (>= 3.2.1).
102s 
102s (Reading database ... 
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102s Removing libarchive13:armhf (3.7.2-1ubuntu2) ...
102s Selecting previously unselected package libarchive13t64:armhf.
102s (Reading database ... 
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102s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_armhf.deb ...
102s Unpacking libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
102s Preparing to unpack .../fwupd_1.9.15-2_armhf.deb ...
102s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ...
102s Preparing to unpack .../apt-utils_2.7.14_armhf.deb ...
102s Unpacking apt-utils (2.7.14) over (2.7.12) ...
102s dpkg: libapt-pkg6.0:armhf: dependency problems, but removing anyway as you requested:
102s  ubuntu-pro-client depends on libapt-pkg6.0 (>= 1.9~).
102s  python3-apt depends on libapt-pkg6.0 (>= 2.7.11).
102s  apt depends on libapt-pkg6.0 (>= 2.7.12).
102s 
102s (Reading database ... 
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102s Removing libapt-pkg6.0:armhf (2.7.12) ...
102s Selecting previously unselected package libapt-pkg6.0t64:armhf.
103s (Reading database ... 
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103s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_armhf.deb ...
103s Unpacking libapt-pkg6.0t64:armhf (2.7.14) ...
103s Setting up libapt-pkg6.0t64:armhf (2.7.14) ...
103s (Reading database ... 
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103s Preparing to unpack .../archives/apt_2.7.14_armhf.deb ...
103s Unpacking apt (2.7.14) over (2.7.12) ...
103s Setting up apt (2.7.14) ...
104s (Reading database ... 
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104s Preparing to unpack .../ubuntu-pro-client-l10n_31.2.1_armhf.deb ...
104s Unpacking ubuntu-pro-client-l10n (31.2.1) over (31.1) ...
104s Preparing to unpack .../ubuntu-pro-client_31.2.1_armhf.deb ...
104s Unpacking ubuntu-pro-client (31.2.1) over (31.1) ...
104s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s dpkg: libnpth0:armhf: dependency problems, but removing anyway as you requested:
104s  gpgv depends on libnpth0 (>= 0.90).
104s  gpgsm depends on libnpth0 (>= 0.90).
104s  gpg-agent depends on libnpth0 (>= 0.90).
104s  gpg depends on libnpth0 (>= 0.90).
104s  dirmngr depends on libnpth0 (>= 0.90).
104s 
104s (Reading database ... 
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104s Removing libnpth0:armhf (1.6-3build2) ...
104s Selecting previously unselected package libnpth0t64:armhf.
104s (Reading database ... 
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104s Preparing to unpack .../libnpth0t64_1.6-3.1_armhf.deb ...
104s Unpacking libnpth0t64:armhf (1.6-3.1) ...
104s Setting up libnpth0t64:armhf (1.6-3.1) ...
104s (Reading database ... 
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104s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s Setting up gpgv (2.4.4-2ubuntu15) ...
104s (Reading database ... 
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104s Preparing to unpack .../gpg_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s Preparing to unpack .../gpg-wks-client_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s Preparing to unpack .../gnupg-utils_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s Preparing to unpack .../gpg-agent_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_armhf.deb ...
104s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
104s dpkg: libreadline8:armhf: dependency problems, but removing anyway as you requested:
104s  gpgconf depends on libreadline8 (>= 6.0).
104s  gawk depends on libreadline8 (>= 6.0).
104s  fdisk depends on libreadline8 (>= 6.0).
104s 
104s (Reading database ... 
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104s Removing libreadline8:armhf (8.2-3) ...
104s Selecting previously unselected package libreadline8t64:armhf.
104s (Reading database ... 
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104s Preparing to unpack .../libreadline8t64_8.2-4_armhf.deb ...
104s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
104s Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
104s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
104s Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
104s Unpacking libreadline8t64:armhf (8.2-4) ...
104s Setting up libreadline8t64:armhf (8.2-4) ...
105s (Reading database ... 
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105s Preparing to unpack .../00-gawk_1%3a5.2.1-2build2_armhf.deb ...
105s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ...
105s Preparing to unpack .../01-fdisk_2.39.3-9ubuntu2_armhf.deb ...
105s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
105s Preparing to unpack .../02-gpgconf_2.4.4-2ubuntu15_armhf.deb ...
105s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
105s Preparing to unpack .../03-dirmngr_2.4.4-2ubuntu15_armhf.deb ...
105s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
105s Preparing to unpack .../04-gnupg_2.4.4-2ubuntu15_all.deb ...
105s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
105s Preparing to unpack .../05-python3-apt_2.7.7_armhf.deb ...
105s Unpacking python3-apt (2.7.7) over (2.7.6) ...
105s Preparing to unpack .../06-pinentry-curses_1.2.1-3ubuntu4_armhf.deb ...
105s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ...
105s Preparing to unpack .../07-python3-yaml_6.0.1-2build1_armhf.deb ...
105s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ...
106s Preparing to unpack .../08-python-apt-common_2.7.7_all.deb ...
106s Unpacking python-apt-common (2.7.7) over (2.7.6) ...
106s Preparing to unpack .../09-python3-setuptools_68.1.2-2ubuntu1_all.deb ...
106s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ...
106s Preparing to unpack .../10-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ...
106s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ...
106s Preparing to unpack .../11-dpkg_1.22.6ubuntu4_armhf.deb ...
106s Unpacking dpkg (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
106s Setting up dpkg (1.22.6ubuntu4) ...
107s Setting up libpython3.12-minimal:armhf (3.12.2-4build3) ...
107s Setting up libexpat1:armhf (2.6.1-2) ...
107s Setting up python3.12-minimal (3.12.2-4build3) ...
108s (Reading database ... 
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108s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_armhf.deb ...
108s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
108s Setting up python3-minimal (3.12.2-0ubuntu1) ...
109s (Reading database ... 
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109s Preparing to unpack .../python3_3.12.2-0ubuntu1_armhf.deb ...
109s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
109s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_armhf.deb ...
109s Unpacking libpython3-stdlib:armhf (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ...
109s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_armhf.deb ...
109s Unpacking libsmartcols1:armhf (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
109s Setting up libsmartcols1:armhf (2.39.3-9ubuntu2) ...
110s (Reading database ... 
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110s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_armhf.deb ...
110s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
110s Preparing to unpack .../1-groff-base_1.23.0-3build1_armhf.deb ...
110s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ...
110s Preparing to unpack .../2-readline-common_8.2-4_all.deb ...
110s Unpacking readline-common (8.2-4) over (8.2-3) ...
110s Selecting previously unselected package libgpgme11t64:armhf.
110s Preparing to unpack .../3-libgpgme11t64_1.18.0-4.1ubuntu3_armhf.deb ...
110s Unpacking libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
110s Preparing to unpack .../4-libblockdev-crypto3_3.1.0-1build1_armhf.deb ...
110s Unpacking libblockdev-crypto3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s Preparing to unpack .../5-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ...
111s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
111s Preparing to unpack .../6-logsave_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
111s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
111s Preparing to unpack .../7-dhcpcd-base_1%3a10.0.6-1ubuntu2_armhf.deb ...
111s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ...
111s Preparing to unpack .../8-libblockdev-fs3_3.1.0-1build1_armhf.deb ...
111s Unpacking libblockdev-fs3:armhf (3.1.0-1build1) over (3.1.0-1) ...
111s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested:
111s  btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27).
111s 
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111s Removing libreiserfscore0 (1:3.6.27-7) ...
111s Selecting previously unselected package libreiserfscore0t64.
111s (Reading database ... 
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111s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_armhf.deb ...
111s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ...
112s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_armhf.deb ...
112s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ...
112s dpkg: libext2fs2:armhf: dependency problems, but removing anyway as you requested:
112s  e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1).
112s 
112s (Reading database ... 
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112s Removing libext2fs2:armhf (1.47.0-2ubuntu1) ...
112s Selecting previously unselected package libext2fs2t64:armhf.
112s (Reading database ... 
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112s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
112s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64'
112s Adding 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
112s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64'
112s Adding 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
112s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
112s Setting up libcom-err2:armhf (1.47.0-2.4~exp1ubuntu2) ...
112s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu2) ...
112s (Reading database ... 
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112s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
112s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
112s Preparing to unpack .../libblockdev-loop3_3.1.0-1build1_armhf.deb ...
112s Unpacking libblockdev-loop3:armhf (3.1.0-1build1) over (3.1.0-1) ...
113s Preparing to unpack .../libblockdev-mdraid3_3.1.0-1build1_armhf.deb ...
113s Unpacking libblockdev-mdraid3:armhf (3.1.0-1build1) over (3.1.0-1) ...
113s Preparing to unpack .../libblockdev-nvme3_3.1.0-1build1_armhf.deb ...
113s Unpacking libblockdev-nvme3:armhf (3.1.0-1build1) over (3.1.0-1) ...
113s (Reading database ... 
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113s Removing libnvme1 (1.8-2) ...
113s Selecting previously unselected package libnvme1t64.
113s (Reading database ... 
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113s Preparing to unpack .../0-libnvme1t64_1.8-3_armhf.deb ...
113s Unpacking libnvme1t64 (1.8-3) ...
113s Preparing to unpack .../1-libblockdev-part3_3.1.0-1build1_armhf.deb ...
113s Unpacking libblockdev-part3:armhf (3.1.0-1build1) over (3.1.0-1) ...
113s Preparing to unpack .../2-libblockdev-swap3_3.1.0-1build1_armhf.deb ...
113s Unpacking libblockdev-swap3:armhf (3.1.0-1build1) over (3.1.0-1) ...
113s Preparing to unpack .../3-libblockdev3_3.1.0-1build1_armhf.deb ...
113s Unpacking libblockdev3:armhf (3.1.0-1build1) over (3.1.0-1) ...
113s Preparing to unpack .../4-libgudev-1.0-0_1%3a238-3ubuntu2_armhf.deb ...
113s Unpacking libgudev-1.0-0:armhf (1:238-3ubuntu2) over (1:238-3) ...
113s Preparing to unpack .../5-libxml2_2.9.14+dfsg-1.3ubuntu2_armhf.deb ...
113s Unpacking libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ...
113s Preparing to unpack .../6-libbpf1_1%3a1.3.0-2build1_armhf.deb ...
113s Unpacking libbpf1:armhf (1:1.3.0-2build1) over (1:1.3.0-2) ...
113s Preparing to unpack .../7-iproute2_6.1.0-1ubuntu5_armhf.deb ...
113s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ...
114s (Reading database ... 
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114s Removing libelf1:armhf (0.190-1) ...
114s Selecting previously unselected package libelf1t64:armhf.
114s (Reading database ... 
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114s Preparing to unpack .../libelf1t64_0.190-1.1build2_armhf.deb ...
114s Unpacking libelf1t64:armhf (0.190-1.1build2) ...
114s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
114s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
114s Preparing to unpack .../lsof_4.95.0-1build2_armhf.deb ...
114s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ...
114s Preparing to unpack .../libnsl2_1.3.0-3build2_armhf.deb ...
114s Unpacking libnsl2:armhf (1.3.0-3build2) over (1.3.0-3) ...
114s (Reading database ... 
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114s Removing libtirpc3:armhf (1.3.4+ds-1build1) ...
114s Selecting previously unselected package libtirpc3t64:armhf.
114s (Reading database ... 
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114s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_armhf.deb ...
114s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64'
114s Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
114s Unpacking libtirpc3t64:armhf (1.3.4+ds-1.1) ...
114s Preparing to unpack .../01-libmbim-proxy_1.31.2-0ubuntu2_armhf.deb ...
114s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ...
114s Preparing to unpack .../02-libmbim-glib4_1.31.2-0ubuntu2_armhf.deb ...
114s Unpacking libmbim-glib4:armhf (1.31.2-0ubuntu2) over (1.30.0-1) ...
114s Preparing to unpack .../03-libjson-glib-1.0-common_1.8.0-2build1_all.deb ...
114s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ...
114s Preparing to unpack .../04-libjson-glib-1.0-0_1.8.0-2build1_armhf.deb ...
114s Unpacking libjson-glib-1.0-0:armhf (1.8.0-2build1) over (1.8.0-2) ...
114s Preparing to unpack .../05-libnghttp2-14_1.59.0-1build1_armhf.deb ...
114s Unpacking libnghttp2-14:armhf (1.59.0-1build1) over (1.59.0-1) ...
114s Preparing to unpack .../06-libssh-4_0.10.6-2build1_armhf.deb ...
114s Unpacking libssh-4:armhf (0.10.6-2build1) over (0.10.6-2) ...
114s Preparing to unpack .../07-libusb-1.0-0_2%3a1.0.27-1_armhf.deb ...
114s Unpacking libusb-1.0-0:armhf (2:1.0.27-1) over (2:1.0.26-1) ...
114s Preparing to unpack .../08-libgusb2_0.4.8-1build1_armhf.deb ...
114s Unpacking libgusb2:armhf (0.4.8-1build1) over (0.4.8-1) ...
114s Preparing to unpack .../09-libmm-glib0_1.23.4-0ubuntu1_armhf.deb ...
114s Unpacking libmm-glib0:armhf (1.23.4-0ubuntu1) over (1.22.0-3) ...
114s Preparing to unpack .../10-libprotobuf-c1_1.4.1-1ubuntu3_armhf.deb ...
114s Unpacking libprotobuf-c1:armhf (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ...
114s Preparing to unpack .../11-libsasl2-2_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
114s Unpacking libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
114s Preparing to unpack .../12-libibverbs1_50.0-2build1_armhf.deb ...
114s Unpacking libibverbs1:armhf (50.0-2build1) over (50.0-2) ...
114s Preparing to unpack .../13-libfido2-1_1.14.0-1build1_armhf.deb ...
114s Unpacking libfido2-1:armhf (1.14.0-1build1) over (1.14.0-1) ...
115s Preparing to unpack .../14-coreutils_9.4-3ubuntu3_armhf.deb ...
115s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ...
115s Setting up coreutils (9.4-3ubuntu3) ...
115s (Reading database ... 
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115s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_armhf.deb ...
115s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
115s Setting up util-linux (2.39.3-9ubuntu2) ...
116s fstrim.service is a disabled or a static unit not running, not starting it.
116s (Reading database ... 
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116s Preparing to unpack .../libc-bin_2.39-0ubuntu6_armhf.deb ...
116s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
116s Setting up libc-bin (2.39-0ubuntu6) ...
116s (Reading database ... 
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116s Removing libatm1:armhf (1:2.5.1-5) ...
116s (Reading database ... 
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116s Preparing to unpack .../file_1%3a5.45-3_armhf.deb ...
116s Unpacking file (1:5.45-3) over (1:5.45-2) ...
117s (Reading database ... 
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117s Removing libmagic1:armhf (1:5.45-2) ...
117s (Reading database ... 
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117s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_armhf.deb ...
117s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ...
117s Selecting previously unselected package libmagic1t64:armhf.
117s Preparing to unpack .../libmagic1t64_1%3a5.45-3_armhf.deb ...
117s Unpacking libmagic1t64:armhf (1:5.45-3) ...
117s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_armhf.deb ...
117s Unpacking libplymouth5:armhf (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
117s (Reading database ... 
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117s Removing libpng16-16:armhf (1.6.43-1) ...
117s Selecting previously unselected package libpng16-16t64:armhf.
117s (Reading database ... 
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117s Preparing to unpack .../libpng16-16t64_1.6.43-3_armhf.deb ...
117s Unpacking libpng16-16t64:armhf (1.6.43-3) ...
117s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_armhf.deb ...
117s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
117s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_armhf.deb ...
117s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
118s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_armhf.deb ...
118s Unpacking bind9-libs:armhf (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ...
118s (Reading database ... 
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118s Removing libuv1:armhf (1.48.0-1) ...
118s Selecting previously unselected package libuv1t64:armhf.
118s (Reading database ... 
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118s Preparing to unpack .../libuv1t64_1.48.0-1.1_armhf.deb ...
118s Unpacking libuv1t64:armhf (1.48.0-1.1) ...
118s (Reading database ... 
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118s Removing python3-distutils (3.11.5-1) ...
118s (Reading database ... 
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118s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_armhf.deb ...
118s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
118s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_armhf.deb ...
118s Unpacking libdebconfclient0:armhf (0.271ubuntu2) over (0.271ubuntu1) ...
118s Setting up libdebconfclient0:armhf (0.271ubuntu2) ...
118s (Reading database ... 
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118s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ...
118s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ...
118s Setting up libsemanage-common (3.5-1build4) ...
118s (Reading database ... 
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118s Preparing to unpack .../libsemanage2_3.5-1build4_armhf.deb ...
118s Unpacking libsemanage2:armhf (3.5-1build4) over (3.5-1build2) ...
118s Setting up libsemanage2:armhf (3.5-1build4) ...
118s (Reading database ... 
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118s Preparing to unpack .../install-info_7.1-3build1_armhf.deb ...
118s Unpacking install-info (7.1-3build1) over (7.1-3) ...
118s Setting up install-info (7.1-3build1) ...
119s (Reading database ... 
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119s Preparing to unpack .../00-gcc-13-base_13.2.0-19ubuntu1_armhf.deb ...
119s Unpacking gcc-13-base:armhf (13.2.0-19ubuntu1) over (13.2.0-17ubuntu2) ...
119s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_armhf.deb ...
119s Unpacking libss2:armhf (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
119s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_armhf.deb ...
119s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ...
119s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_armhf.deb ...
119s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
119s Preparing to unpack .../04-krb5-locales_1.20.1-5.1ubuntu1_all.deb ...
119s Unpacking krb5-locales (1.20.1-5.1ubuntu1) over (1.20.1-5build1) ...
119s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
119s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
119s Preparing to unpack .../06-libslang2_2.3.3-3build1_armhf.deb ...
119s Unpacking libslang2:armhf (2.3.3-3build1) over (2.3.3-3) ...
119s Preparing to unpack .../07-locales_2.39-0ubuntu6_all.deb ...
119s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ...
120s Preparing to unpack .../08-vim-tiny_2%3a9.1.0016-1ubuntu5_armhf.deb ...
120s Unpacking vim-tiny (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
120s Preparing to unpack .../09-vim-common_2%3a9.1.0016-1ubuntu5_all.deb ...
120s Unpacking vim-common (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
120s Selecting previously unselected package xdg-user-dirs.
120s Preparing to unpack .../10-xdg-user-dirs_0.18-1_armhf.deb ...
120s Unpacking xdg-user-dirs (0.18-1) ...
120s Preparing to unpack .../11-xxd_2%3a9.1.0016-1ubuntu5_armhf.deb ...
120s Unpacking xxd (2:9.1.0016-1ubuntu5) over (2:9.1.0016-1ubuntu2) ...
120s Preparing to unpack .../12-apparmor_4.0.0-beta3-0ubuntu2_armhf.deb ...
121s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ...
121s Preparing to unpack .../13-ftp_20230507-2build1_all.deb ...
121s Unpacking ftp (20230507-2build1) over (20230507-2) ...
121s Preparing to unpack .../14-inetutils-telnet_2%3a2.5-3ubuntu3_armhf.deb ...
121s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ...
121s Preparing to unpack .../15-info_7.1-3build1_armhf.deb ...
121s Unpacking info (7.1-3build1) over (7.1-3) ...
121s Preparing to unpack .../16-libxmuu1_2%3a1.1.3-3build1_armhf.deb ...
121s Unpacking libxmuu1:armhf (2:1.1.3-3build1) over (2:1.1.3-3) ...
121s Preparing to unpack .../17-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_armhf.deb ...
121s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ...
121s Preparing to unpack .../18-mtr-tiny_0.95-1.1build1_armhf.deb ...
121s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ...
121s Preparing to unpack .../19-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_armhf.deb ...
121s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
121s Preparing to unpack .../20-plymouth_24.004.60-1ubuntu6_armhf.deb ...
122s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ...
122s Preparing to unpack .../21-psmisc_23.7-1_armhf.deb ...
122s Unpacking psmisc (23.7-1) over (23.6-2) ...
122s Preparing to unpack .../22-telnet_0.17+2.5-3ubuntu3_all.deb ...
122s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ...
122s Preparing to unpack .../23-usb.ids_2024.03.18-1_all.deb ...
122s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ...
122s Preparing to unpack .../24-xz-utils_5.6.0-0.2_armhf.deb ...
122s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ...
122s Preparing to unpack .../25-libctf0_2.42-4ubuntu1_armhf.deb ...
122s Unpacking libctf0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../26-libctf-nobfd0_2.42-4ubuntu1_armhf.deb ...
122s Unpacking libctf-nobfd0:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../27-binutils-arm-linux-gnueabihf_2.42-4ubuntu1_armhf.deb ...
122s Unpacking binutils-arm-linux-gnueabihf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../28-libbinutils_2.42-4ubuntu1_armhf.deb ...
122s Unpacking libbinutils:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../29-binutils_2.42-4ubuntu1_armhf.deb ...
122s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../30-binutils-common_2.42-4ubuntu1_armhf.deb ...
122s Unpacking binutils-common:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../31-libsframe1_2.42-4ubuntu1_armhf.deb ...
122s Unpacking libsframe1:armhf (2.42-4ubuntu1) over (2.42-3ubuntu1) ...
122s Preparing to unpack .../32-bolt_0.9.6-2build1_armhf.deb ...
122s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ...
122s Preparing to unpack .../33-cryptsetup-bin_2%3a2.7.0-1ubuntu2_armhf.deb ...
122s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ...
122s Preparing to unpack .../34-dpkg-dev_1.22.6ubuntu4_all.deb ...
122s Unpacking dpkg-dev (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
123s Preparing to unpack .../35-libdpkg-perl_1.22.6ubuntu4_all.deb ...
123s Unpacking libdpkg-perl (1.22.6ubuntu4) over (1.22.4ubuntu5) ...
123s Preparing to unpack .../36-gnupg-l10n_2.4.4-2ubuntu15_all.deb ...
123s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
123s Preparing to unpack .../37-ibverbs-providers_50.0-2build1_armhf.deb ...
123s Unpacking ibverbs-providers:armhf (50.0-2build1) over (50.0-2) ...
123s Preparing to unpack .../38-jq_1.7.1-3_armhf.deb ...
123s Unpacking jq (1.7.1-3) over (1.7.1-2) ...
123s Preparing to unpack .../39-libjq1_1.7.1-3_armhf.deb ...
123s Unpacking libjq1:armhf (1.7.1-3) over (1.7.1-2) ...
123s Selecting previously unselected package libatm1t64:armhf.
123s Preparing to unpack .../40-libatm1t64_1%3a2.5.1-5.1_armhf.deb ...
123s Unpacking libatm1t64:armhf (1:2.5.1-5.1) ...
123s Preparing to unpack .../41-libevent-core-2.1-7_2.1.12-stable-9build1_armhf.deb ...
123s Unpacking libevent-core-2.1-7:armhf (2.1.12-stable-9build1) over (2.1.12-stable-9) ...
123s Preparing to unpack .../42-libftdi1-2_1.5-6build4_armhf.deb ...
123s Unpacking libftdi1-2:armhf (1.5-6build4) over (1.5-6build3) ...
123s Preparing to unpack .../43-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ...
123s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
123s Preparing to unpack .../44-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_armhf.deb ...
123s Unpacking libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
123s Preparing to unpack .../45-python3-lib2to3_3.12.2-3ubuntu2_all.deb ...
124s Unpacking python3-lib2to3 (3.12.2-3ubuntu2) over (3.11.5-1) ...
124s Preparing to unpack .../46-python3-pyrsistent_0.20.0-1build1_armhf.deb ...
124s Unpacking python3-pyrsistent:armhf (0.20.0-1build1) over (0.20.0-1) ...
124s Preparing to unpack .../47-python3-typing-extensions_4.10.0-1_all.deb ...
124s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ...
124s Preparing to unpack .../48-kpartx_0.9.4-5ubuntu6_armhf.deb ...
124s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ...
124s Setting up pinentry-curses (1.2.1-3ubuntu4) ...
124s Setting up libtext-iconv-perl:armhf (1.7-8build2) ...
124s Setting up libtext-charwidth-perl:armhf (0.04-11build2) ...
124s Setting up libibverbs1:armhf (50.0-2build1) ...
124s Setting up systemd-sysv (255.4-1ubuntu5) ...
124s Setting up libapparmor1:armhf (4.0.0-beta3-0ubuntu2) ...
124s Setting up libatm1t64:armhf (1:2.5.1-5.1) ...
124s Setting up libgdbm6t64:armhf (1.23-5.1) ...
124s Setting up bsdextrautils (2.39.3-9ubuntu2) ...
124s Setting up libgdbm-compat4t64:armhf (1.23-5.1) ...
124s Setting up xdg-user-dirs (0.18-1) ...
124s Setting up ibverbs-providers:armhf (50.0-2build1) ...
124s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ...
124s Setting up libmagic-mgc (1:5.45-3) ...
124s Setting up gawk (1:5.2.1-2build2) ...
124s Setting up psmisc (23.7-1) ...
124s Setting up libjq1:armhf (1.7.1-3) ...
124s Setting up libtirpc-common (1.3.4+ds-1.1) ...
124s Setting up libbrotli1:armhf (1.1.0-2build1) ...
124s Setting up libsqlite3-0:armhf (3.45.1-1ubuntu1) ...
124s Setting up libsasl2-modules:armhf (2.1.28+dfsg1-5ubuntu1) ...
124s Setting up libuv1t64:armhf (1.48.0-1.1) ...
124s Setting up libmagic1t64:armhf (1:5.45-3) ...
124s Setting up binutils-common:armhf (2.42-4ubuntu1) ...
124s Setting up libpsl5t64:armhf (0.21.2-1.1) ...
124s Setting up libnghttp2-14:armhf (1.59.0-1build1) ...
124s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ...
124s Setting up libctf-nobfd0:armhf (2.42-4ubuntu1) ...
124s Setting up libnss-systemd:armhf (255.4-1ubuntu5) ...
124s Setting up krb5-locales (1.20.1-5.1ubuntu1) ...
124s Setting up file (1:5.45-3) ...
124s Setting up kmod (31+20240202-2ubuntu4) ...
125s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ...
125s Setting up locales (2.39-0ubuntu6) ...
125s Generating locales (this might take a while)...
127s   en_US.UTF-8... done
127s Generation complete.
127s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ...
127s Setting up libprotobuf-c1:armhf (1.4.1-1ubuntu3) ...
127s Setting up xxd (2:9.1.0016-1ubuntu5) ...
127s Setting up libsframe1:armhf (2.42-4ubuntu1) ...
127s Setting up libelf1t64:armhf (0.190-1.1build2) ...
127s Setting up libkrb5support0:armhf (1.20.1-5.1ubuntu1) ...
127s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
127s Setting up eject (2.39.3-9ubuntu2) ...
127s Setting up apparmor (4.0.0-beta3-0ubuntu2) ...
127s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
127s Installing new version of config file /etc/apparmor.d/abstractions/crypto ...
127s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ...
127s Installing new version of config file /etc/apparmor.d/abstractions/openssl ...
127s Installing new version of config file /etc/apparmor.d/code ...
127s Installing new version of config file /etc/apparmor.d/firefox ...
128s apparmor_parser: Unable to replace "lsb_release".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
128s 
128s apparmor_parser: Unable to replace "kmod".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
128s 
128s apparmor_parser: Unable to replace "nvidia_modprobe".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
128s 
129s sysctl: cannot stat /proc/sys/kernel/apparmor_restrict_unprivileged_userns: No such file or directory
129s Reloading AppArmor profiles 
129s /sbin/apparmor_parser: Unable to replace "Discord".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "MongoDB Compass".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "1password".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "brave".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "buildah".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "busybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "cam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "ch-run".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "ch-checkns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "chrome".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "vscode".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "crun".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "devhelp".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "element-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "epiphany".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "evolution".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "firefox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "flatpak".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "geary".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "github-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "ipa_verify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "goldendict".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "kchmviewer".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "keybase".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lc-compliance".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "libcamerify".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "linux-sandbox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "loupe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-attach".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-create".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-destroy".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-execute".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-stop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-unshare".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lxc-usernsexec".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "mmdebstrap".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "msedge".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "nautilus".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "notepadqq".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "obsidian".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "opam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "pageedit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "opera".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "privacybrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "podman".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "polypane".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "qcam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "qutebrowser".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "qmapshack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "rootlesskit".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "rssguard".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "runc".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "rpm".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-abort".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-apt".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-checkpackages".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "QtWebEngineProcess".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "plasmashell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-destroychroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-createchroot".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-adduser".  /sbin/apparmor_parser: Unable to replace "sbuild-distupgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-clean".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-shell".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-hold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-unhold".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-update".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "scide".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "signal-desktop".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "slack".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "slirp4netns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "steam".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "stress-ng".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "sbuild-upgrade".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "systemd-coredump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "thunderbird".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "lsb_release".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "toybox".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "surfshark".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "tup".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "trinity".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "tuxedo-control-center".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "userbindmount".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "unprivileged_userns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "uwsgi-core".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "vdens".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "virtiofsd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "kmod".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "nvidia_modprobe".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "vivaldi-bin".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "vpnns".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "wpcom".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "unix-chkpwd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "rsyslogd".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "/usr/bin/man".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s /sbin/apparmor_parser: Unable to replace "tcpdump".  /sbin/apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
129s 
129s Error: At least one profile failed to load
129s Setting up libglib2.0-0t64:armhf (2.79.3-3ubuntu5) ...
129s No schema files found: doing nothing.
129s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
129s Setting up vim-common (2:9.1.0016-1ubuntu5) ...
129s Setting up gcc-13-base:armhf (13.2.0-19ubuntu1) ...
129s Setting up libqrtr-glib0:armhf (1.2.2-1ubuntu3) ...
129s Setting up libslang2:armhf (2.3.3-3build1) ...
129s Setting up libnvme1t64 (1.8-3) ...
129s Setting up mtr-tiny (0.95-1.1build1) ...
129s Setting up gnupg-l10n (2.4.4-2ubuntu15) ...
129s Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build6) ...
129s Setting up libdbus-1-3:armhf (1.14.10-4ubuntu2) ...
129s Setting up xz-utils (5.6.0-0.2) ...
129s Setting up perl-modules-5.38 (5.38.2-3.2) ...
129s Setting up libblockdev-utils3:armhf (3.1.0-1build1) ...
129s Setting up libpng16-16t64:armhf (1.6.43-3) ...
129s Setting up systemd-timesyncd (255.4-1ubuntu5) ...
129s Setting up libevent-core-2.1-7:armhf (2.1.12-stable-9build1) ...
129s Setting up udev (255.4-1ubuntu5) ...
130s Setting up libss2:armhf (1.47.0-2.4~exp1ubuntu2) ...
130s Setting up usb.ids (2024.03.18-1) ...
130s Setting up sudo (1.9.15p5-3ubuntu3) ...
130s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ...
130s Setting up gir1.2-glib-2.0:armhf (2.79.3-3ubuntu5) ...
130s Setting up libk5crypto3:armhf (1.20.1-5.1ubuntu1) ...
130s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ...
130s Setting up libfdisk1:armhf (2.39.3-9ubuntu2) ...
130s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-6) ...
130s Setting up libblockdev-nvme3:armhf (3.1.0-1build1) ...
130s Setting up libdevmapper1.02.1:armhf (2:1.02.185-3ubuntu2) ...
130s Setting up libblockdev-fs3:armhf (3.1.0-1build1) ...
130s Setting up python-apt-common (2.7.7) ...
130s Setting up mount (2.39.3-9ubuntu2) ...
130s Setting up dmsetup (2:1.02.185-3ubuntu2) ...
130s Setting up uuid-runtime (2.39.3-9ubuntu2) ...
131s uuidd.service is a disabled or a static unit not running, not starting it.
131s Setting up libmm-glib0:armhf (1.23.4-0ubuntu1) ...
131s Setting up groff-base (1.23.0-3build1) ...
131s Setting up libplymouth5:armhf (24.004.60-1ubuntu6) ...
131s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ...
131s Setting up kpartx (0.9.4-5ubuntu6) ...
131s Setting up jq (1.7.1-3) ...
131s Setting up gpgconf (2.4.4-2ubuntu15) ...
131s Setting up libpcap0.8t64:armhf (1.10.4-4.1ubuntu1) ...
131s Setting up libcryptsetup12:armhf (2:2.7.0-1ubuntu2) ...
131s Setting up libgirepository-1.0-1:armhf (1.79.1-1ubuntu6) ...
131s Setting up libjson-glib-1.0-common (1.8.0-2build1) ...
131s Setting up libkrb5-3:armhf (1.20.1-5.1ubuntu1) ...
131s Setting up libpython3.11-minimal:armhf (3.11.8-1build4) ...
131s Setting up libusb-1.0-0:armhf (2:1.0.27-1) ...
131s Setting up libperl5.38t64:armhf (5.38.2-3.2) ...
131s Setting up tnftp (20230507-2build1) ...
131s Setting up libbinutils:armhf (2.42-4ubuntu1) ...
131s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ...
131s Setting up libfido2-1:armhf (1.14.0-1build1) ...
131s Setting up openssl (3.0.13-0ubuntu2) ...
131s Setting up readline-common (8.2-4) ...
131s Setting up libxml2:armhf (2.9.14+dfsg-1.3ubuntu2) ...
131s Setting up libxmuu1:armhf (2:1.1.3-3build1) ...
131s Setting up dbus-bin (1.14.10-4ubuntu2) ...
131s Setting up info (7.1-3build1) ...
131s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ...
131s Setting up gpg (2.4.4-2ubuntu15) ...
131s Setting up libgudev-1.0-0:armhf (1:238-3ubuntu2) ...
131s Setting up libpolkit-gobject-1-0:armhf (124-1ubuntu1) ...
131s Setting up libbpf1:armhf (1:1.3.0-2build1) ...
131s Setting up libmbim-glib4:armhf (1.31.2-0ubuntu2) ...
131s Setting up rsync (3.2.7-1build1) ...
132s rsync.service is a disabled or a static unit not running, not starting it.
132s Setting up libudisks2-0:armhf (2.10.1-6) ...
132s Setting up bolt (0.9.6-2build1) ...
132s bolt.service is a disabled or a static unit not running, not starting it.
132s Setting up gnupg-utils (2.4.4-2ubuntu15) ...
132s Setting up initramfs-tools-bin (0.142ubuntu23) ...
132s Setting up libctf0:armhf (2.42-4ubuntu1) ...
132s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ...
132s Setting up python3.11-minimal (3.11.8-1build4) ...
133s Setting up tcpdump (4.99.4-3ubuntu2) ...
133s apparmor_parser: Unable to replace "tcpdump".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
133s 
133s Setting up apt-utils (2.7.14) ...
133s Setting up gpg-agent (2.4.4-2ubuntu15) ...
134s Setting up libpython3.12-stdlib:armhf (3.12.2-4build3) ...
134s Setting up libblockdev-mdraid3:armhf (3.1.0-1build1) ...
134s Setting up wget (1.21.4-1ubuntu2) ...
134s Setting up libblockdev-swap3:armhf (3.1.0-1build1) ...
134s Setting up plymouth (24.004.60-1ubuntu6) ...
134s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
134s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
134s Setting up libxmlb2:armhf (0.3.15-1build1) ...
134s Setting up btrfs-progs (6.6.3-1.1build1) ...
134s Setting up libpython3.11-stdlib:armhf (3.11.8-1build4) ...
134s Setting up python3.12 (3.12.2-4build3) ...
135s Setting up libblockdev-loop3:armhf (3.1.0-1build1) ...
135s Setting up gpgsm (2.4.4-2ubuntu15) ...
135s Setting up inetutils-telnet (2:2.5-3ubuntu3) ...
135s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ...
135s update-initramfs: deferring update (trigger activated)
136s e2scrub_all.service is a disabled or a static unit not running, not starting it.
136s Setting up libparted2t64:armhf (3.6-3.1build2) ...
136s Setting up linux-headers-generic (6.8.0-20.20+1) ...
136s Setting up dbus-daemon (1.14.10-4ubuntu2) ...
136s Setting up libmbim-proxy (1.31.2-0ubuntu2) ...
136s Setting up vim-tiny (2:9.1.0016-1ubuntu5) ...
136s Setting up libnetplan1:armhf (1.0-1) ...
136s Setting up man-db (2.12.0-3build4) ...
136s Updating database of manual pages ...
137s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
137s 
138s man-db.service is a disabled or a static unit not running, not starting it.
138s Setting up libblockdev3:armhf (3.1.0-1build1) ...
138s Setting up fdisk (2.39.3-9ubuntu2) ...
138s Setting up libjson-glib-1.0-0:armhf (1.8.0-2build1) ...
138s Setting up libblockdev-part3:armhf (3.1.0-1build1) ...
138s Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-5ubuntu1) ...
138s Setting up libftdi1-2:armhf (1.5-6build4) ...
138s Setting up perl (5.38.2-3.2) ...
138s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ...
138s update-initramfs: deferring update (trigger activated)
138s Setting up gir1.2-girepository-2.0:armhf (1.79.1-1ubuntu6) ...
138s Setting up dbus (1.14.10-4ubuntu2) ...
138s A reboot is required to replace the running dbus-daemon.
138s Please reboot the system when convenient.
138s Setting up shared-mime-info (2.4-1build1) ...
139s Setting up libgssapi-krb5-2:armhf (1.20.1-5.1ubuntu1) ...
139s Setting up ftp (20230507-2build1) ...
139s Setting up keyboxd (2.4.4-2ubuntu15) ...
139s Setting up libdpkg-perl (1.22.6ubuntu4) ...
139s Setting up libsasl2-2:armhf (2.1.28+dfsg1-5ubuntu1) ...
139s Setting up libssh-4:armhf (0.10.6-2build1) ...
139s Setting up libpam-systemd:armhf (255.4-1ubuntu5) ...
139s Setting up libpolkit-agent-1-0:armhf (124-1ubuntu1) ...
139s Setting up libgpgme11t64:armhf (1.18.0-4.1ubuntu3) ...
139s Setting up netplan-generator (1.0-1) ...
139s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
139s Setting up initramfs-tools-core (0.142ubuntu23) ...
139s Setting up binutils-arm-linux-gnueabihf (2.42-4ubuntu1) ...
139s Setting up libarchive13t64:armhf (3.7.2-1.1ubuntu2) ...
139s Setting up libldap2:armhf (2.6.7+dfsg-1~exp1ubuntu6) ...
139s Setting up libpython3-stdlib:armhf (3.12.2-0ubuntu1) ...
139s Setting up systemd-resolved (255.4-1ubuntu5) ...
140s Setting up python3.11 (3.11.8-1build4) ...
141s Setting up telnet (0.17+2.5-3ubuntu3) ...
141s Setting up initramfs-tools (0.142ubuntu23) ...
141s update-initramfs: deferring update (trigger activated)
141s Setting up libcurl4t64:armhf (8.5.0-2ubuntu7) ...
141s Setting up bind9-libs:armhf (1:9.18.24-0ubuntu3) ...
141s Setting up libtirpc3t64:armhf (1.3.4+ds-1.1) ...
141s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ...
141s Setting up iproute2 (6.1.0-1ubuntu5) ...
141s Setting up openssh-client (1:9.6p1-3ubuntu11) ...
141s Setting up libgusb2:armhf (0.4.8-1build1) ...
141s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu7) ...
141s Setting up parted (3.6-3.1build2) ...
141s Setting up libqmi-glib5:armhf (1.35.2-0ubuntu1) ...
141s Setting up python3 (3.12.2-0ubuntu1) ...
141s Setting up binutils (2.42-4ubuntu1) ...
141s Setting up libjcat1:armhf (0.2.0-2build2) ...
141s Setting up dpkg-dev (1.22.6ubuntu4) ...
141s Setting up dirmngr (2.4.4-2ubuntu15) ...
141s Setting up dbus-user-session (1.14.10-4ubuntu2) ...
141s Setting up python3-cryptography (41.0.7-4build2) ...
141s Setting up python3-gi (3.47.0-3build1) ...
142s Setting up python3-typing-extensions (4.10.0-1) ...
142s Setting up lsof (4.95.0-1build2) ...
142s Setting up python3-pyrsistent:armhf (0.20.0-1build1) ...
142s Setting up libnsl2:armhf (1.3.0-3build2) ...
142s Setting up gnupg (2.4.4-2ubuntu15) ...
142s Setting up python3-netplan (1.0-1) ...
142s Setting up curl (8.5.0-2ubuntu7) ...
142s Setting up libvolume-key1:armhf (0.3.12-7build1) ...
142s Setting up bind9-host (1:9.18.24-0ubuntu3) ...
142s Setting up python3-lib2to3 (3.12.2-3ubuntu2) ...
142s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
142s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ...
142s Setting up python3-dbus (1.3.2-5build2) ...
143s Setting up python3-setuptools (68.1.2-2ubuntu1) ...
143s Setting up gpg-wks-client (2.4.4-2ubuntu15) ...
143s Setting up openssh-server (1:9.6p1-3ubuntu11) ...
143s Replacing config file /etc/ssh/sshd_config with new version
145s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket.

146s Setting up libblockdev-crypto3:armhf (3.1.0-1build1) ...
146s Setting up python3-gdbm:armhf (3.12.2-3ubuntu2) ...
146s Setting up python3-apt (2.7.7) ...
146s Setting up libfwupd2:armhf (1.9.15-2) ...
146s Setting up python3-yaml (6.0.1-2build1) ...
146s Setting up libqmi-proxy (1.35.2-0ubuntu1) ...
146s Setting up netplan.io (1.0-1) ...
146s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ...
146s Setting up ubuntu-pro-client (31.2.1) ...
146s apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
146s 
148s Setting up fwupd (1.9.15-2) ...
148s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
148s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
148s fwupd.service is a disabled or a static unit not running, not starting it.
148s Setting up ubuntu-pro-client-l10n (31.2.1) ...
148s Setting up udisks2 (2.10.1-6) ...
148s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied

148s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied

148s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied

148s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied

148s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied

148s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied

148s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied

148s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied

148s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied

148s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied

148s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied

148s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied

149s Processing triggers for ufw (0.36.2-5) ...
149s Processing triggers for systemd (255.4-1ubuntu5) ...
150s Processing triggers for install-info (7.1-3build1) ...
150s Processing triggers for libc-bin (2.39-0ubuntu6) ...
150s Processing triggers for initramfs-tools (0.142ubuntu23) ...
151s Reading package lists...
151s Building dependency tree...
151s Reading state information...
152s The following packages will be REMOVED:
152s   linux-headers-6.8.0-11* python3-lib2to3*
152s 0 upgraded, 0 newly installed, 2 to remove and 1 not upgraded.
152s After this operation, 85.8 MB disk space will be freed.
152s (Reading database ... 
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(Reading database ... 78592 files and directories currently installed.)
152s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ...
153s Removing python3-lib2to3 (3.12.2-3ubuntu2) ...
155s autopkgtest [11:04:45]: rebooting testbed after setup commands that affected boot
194s autopkgtest [11:05:24]: testbed running kernel: Linux 5.15.0-101-generic #111-Ubuntu SMP Wed Mar 6 18:01:01 UTC 2024
219s autopkgtest [11:05:49]: @@@@@@@@@@@@@@@@@@@@ apt-source bbmap
232s Get:1 http://ftpmaster.internal/ubuntu noble/universe bbmap 39.06+dfsg-1 (dsc) [2286 B]
232s Get:2 http://ftpmaster.internal/ubuntu noble/universe bbmap 39.06+dfsg-1 (tar) [5343 kB]
232s Get:3 http://ftpmaster.internal/ubuntu noble/universe bbmap 39.06+dfsg-1 (diff) [25.4 kB]
233s gpgv: Signature made Fri Nov 24 11:00:29 2023 UTC
233s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
233s gpgv:                issuer "emollier@debian.org"
233s gpgv: Can't check signature: No public key
233s dpkg-source: warning: cannot verify inline signature for ./bbmap_39.06+dfsg-1.dsc: no acceptable signature found
233s autopkgtest [11:06:03]: testing package bbmap version 39.06+dfsg-1
235s autopkgtest [11:06:05]: build not needed
238s autopkgtest [11:06:08]: test run-unit-test: preparing testbed
250s Reading package lists...
251s Building dependency tree...
251s Reading state information...
251s Starting pkgProblemResolver with broken count: 0
251s Starting 2 pkgProblemResolver with broken count: 0
251s Done
252s The following additional packages will be installed:
252s   bbmap bbmap-jni ca-certificates-java java-common libapache-pom-java
252s   libcommons-cli-java libcommons-codec-java libcommons-io-java
252s   libcommons-parent-java libjpeg-turbo8 libjpeg8 liblcms2-2 liblog4j1.2-java
252s   libmpj-java libpcsclite1 openjdk-17-jre-headless python-biopython-doc
252s Suggested packages:
252s   default-jre libcommons-io-java-doc liblcms2-utils liblog4j1.2-java-doc
252s   libmail-java pcscd libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic
252s   fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic
252s Recommended packages:
252s   pigz libcups2t64 libfontconfig1 libfreetype6 libharfbuzz0b libasound2t64
252s   python3-biopython
252s The following NEW packages will be installed:
252s   autopkgtest-satdep bbmap bbmap-jni ca-certificates-java java-common
252s   libapache-pom-java libcommons-cli-java libcommons-codec-java
252s   libcommons-io-java libcommons-parent-java libjpeg-turbo8 libjpeg8 liblcms2-2
252s   liblog4j1.2-java libmpj-java libpcsclite1 openjdk-17-jre-headless
252s   python-biopython-doc
252s 0 upgraded, 18 newly installed, 0 to remove and 1 not upgraded.
252s Need to get 71.0 MB/71.0 MB of archives.
252s After this operation, 196 MB of additional disk space will be used.
252s Get:1 /tmp/autopkgtest.F2jQ7E/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B]
252s Get:2 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-cli-java all 1.6.0-1 [59.9 kB]
252s Get:3 http://ftpmaster.internal/ubuntu noble/universe armhf libapache-pom-java all 29-2 [5284 B]
252s Get:4 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-parent-java all 56-1 [10.7 kB]
252s Get:5 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-codec-java all 1.16.0-1 [306 kB]
252s Get:6 http://ftpmaster.internal/ubuntu noble/universe armhf libcommons-io-java all 2.11.0-2 [297 kB]
252s Get:7 http://ftpmaster.internal/ubuntu noble/universe armhf liblog4j1.2-java all 1.2.17-11 [439 kB]
252s Get:8 http://ftpmaster.internal/ubuntu noble/universe armhf libmpj-java all 0.44+dfsg-4 [443 kB]
253s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf ca-certificates-java all 20240118 [11.6 kB]
253s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf java-common all 0.75+exp1 [6798 B]
253s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf liblcms2-2 armhf 2.14-2 [134 kB]
253s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB]
253s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
253s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpcsclite1 armhf 2.0.3-1 [21.1 kB]
253s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openjdk-17-jre-headless armhf 17.0.11~7ea-1 [42.0 MB]
254s Get:16 http://ftpmaster.internal/ubuntu noble/universe armhf bbmap all 39.06+dfsg-1 [9768 kB]
254s Get:17 http://ftpmaster.internal/ubuntu noble/universe armhf bbmap-jni armhf 39.06+dfsg-1 [19.3 kB]
254s Get:18 http://ftpmaster.internal/ubuntu noble/universe armhf python-biopython-doc all 1.81+dfsg-3 [17.3 MB]
255s Fetched 71.0 MB in 3s (26.3 MB/s)
255s Selecting previously unselected package libcommons-cli-java.
255s (Reading database ... 
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(Reading database ... 58435 files and directories currently installed.)
255s Preparing to unpack .../00-libcommons-cli-java_1.6.0-1_all.deb ...
255s Unpacking libcommons-cli-java (1.6.0-1) ...
255s Selecting previously unselected package libapache-pom-java.
255s Preparing to unpack .../01-libapache-pom-java_29-2_all.deb ...
255s Unpacking libapache-pom-java (29-2) ...
255s Selecting previously unselected package libcommons-parent-java.
255s Preparing to unpack .../02-libcommons-parent-java_56-1_all.deb ...
255s Unpacking libcommons-parent-java (56-1) ...
255s Selecting previously unselected package libcommons-codec-java.
255s Preparing to unpack .../03-libcommons-codec-java_1.16.0-1_all.deb ...
255s Unpacking libcommons-codec-java (1.16.0-1) ...
255s Selecting previously unselected package libcommons-io-java.
255s Preparing to unpack .../04-libcommons-io-java_2.11.0-2_all.deb ...
255s Unpacking libcommons-io-java (2.11.0-2) ...
255s Selecting previously unselected package liblog4j1.2-java.
255s Preparing to unpack .../05-liblog4j1.2-java_1.2.17-11_all.deb ...
255s Unpacking liblog4j1.2-java (1.2.17-11) ...
255s Selecting previously unselected package libmpj-java.
255s Preparing to unpack .../06-libmpj-java_0.44+dfsg-4_all.deb ...
255s Unpacking libmpj-java (0.44+dfsg-4) ...
255s Selecting previously unselected package ca-certificates-java.
255s Preparing to unpack .../07-ca-certificates-java_20240118_all.deb ...
255s Unpacking ca-certificates-java (20240118) ...
255s Selecting previously unselected package java-common.
255s Preparing to unpack .../08-java-common_0.75+exp1_all.deb ...
255s Unpacking java-common (0.75+exp1) ...
255s Selecting previously unselected package liblcms2-2:armhf.
256s Preparing to unpack .../09-liblcms2-2_2.14-2_armhf.deb ...
256s Unpacking liblcms2-2:armhf (2.14-2) ...
256s Selecting previously unselected package libjpeg-turbo8:armhf.
256s Preparing to unpack .../10-libjpeg-turbo8_2.1.5-2ubuntu1_armhf.deb ...
256s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
256s Selecting previously unselected package libjpeg8:armhf.
256s Preparing to unpack .../11-libjpeg8_8c-2ubuntu11_armhf.deb ...
256s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
256s Selecting previously unselected package libpcsclite1:armhf.
256s Preparing to unpack .../12-libpcsclite1_2.0.3-1_armhf.deb ...
256s Unpacking libpcsclite1:armhf (2.0.3-1) ...
256s Selecting previously unselected package openjdk-17-jre-headless:armhf.
256s Preparing to unpack .../13-openjdk-17-jre-headless_17.0.11~7ea-1_armhf.deb ...
256s Unpacking openjdk-17-jre-headless:armhf (17.0.11~7ea-1) ...
257s Selecting previously unselected package bbmap.
257s Preparing to unpack .../14-bbmap_39.06+dfsg-1_all.deb ...
257s Unpacking bbmap (39.06+dfsg-1) ...
257s Selecting previously unselected package bbmap-jni.
257s Preparing to unpack .../15-bbmap-jni_39.06+dfsg-1_armhf.deb ...
257s Unpacking bbmap-jni (39.06+dfsg-1) ...
257s Selecting previously unselected package python-biopython-doc.
257s Preparing to unpack .../16-python-biopython-doc_1.81+dfsg-3_all.deb ...
257s Unpacking python-biopython-doc (1.81+dfsg-3) ...
257s Selecting previously unselected package autopkgtest-satdep.
257s Preparing to unpack .../17-1-autopkgtest-satdep.deb ...
257s Unpacking autopkgtest-satdep (0) ...
258s Setting up liblcms2-2:armhf (2.14-2) ...
258s Setting up java-common (0.75+exp1) ...
258s Setting up libcommons-cli-java (1.6.0-1) ...
258s Setting up liblog4j1.2-java (1.2.17-11) ...
258s Setting up libapache-pom-java (29-2) ...
258s Setting up libpcsclite1:armhf (2.0.3-1) ...
258s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ...
258s Setting up python-biopython-doc (1.81+dfsg-3) ...
258s Setting up bbmap-jni (39.06+dfsg-1) ...
258s Setting up ca-certificates-java (20240118) ...
258s No JRE found. Skipping Java certificates setup.
258s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
258s Setting up libcommons-parent-java (56-1) ...
258s Setting up openjdk-17-jre-headless:armhf (17.0.11~7ea-1) ...
258s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode
258s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
258s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
258s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
258s update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
258s Setting up libcommons-codec-java (1.16.0-1) ...
258s Setting up libcommons-io-java (2.11.0-2) ...
258s Setting up libmpj-java (0.44+dfsg-4) ...
258s Processing triggers for libc-bin (2.39-0ubuntu6) ...
258s Processing triggers for man-db (2.12.0-3build4) ...
259s Processing triggers for ca-certificates-java (20240118) ...
260s Adding debian:ACCVRAIZ1.pem
260s Adding debian:AC_RAIZ_FNMT-RCM.pem
260s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
260s Adding debian:ANF_Secure_Server_Root_CA.pem
260s Adding debian:Actalis_Authentication_Root_CA.pem
260s Adding debian:AffirmTrust_Commercial.pem
260s Adding debian:AffirmTrust_Networking.pem
260s Adding debian:AffirmTrust_Premium.pem
260s Adding debian:AffirmTrust_Premium_ECC.pem
260s Adding debian:Amazon_Root_CA_1.pem
260s Adding debian:Amazon_Root_CA_2.pem
260s Adding debian:Amazon_Root_CA_3.pem
260s Adding debian:Amazon_Root_CA_4.pem
260s Adding debian:Atos_TrustedRoot_2011.pem
260s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
260s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
260s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
260s Adding debian:BJCA_Global_Root_CA1.pem
260s Adding debian:BJCA_Global_Root_CA2.pem
260s Adding debian:Baltimore_CyberTrust_Root.pem
260s Adding debian:Buypass_Class_2_Root_CA.pem
260s Adding debian:Buypass_Class_3_Root_CA.pem
260s Adding debian:CA_Disig_Root_R2.pem
260s Adding debian:CFCA_EV_ROOT.pem
260s Adding debian:COMODO_Certification_Authority.pem
260s Adding debian:COMODO_ECC_Certification_Authority.pem
260s Adding debian:COMODO_RSA_Certification_Authority.pem
260s Adding debian:Certainly_Root_E1.pem
260s Adding debian:Certainly_Root_R1.pem
260s Adding debian:Certigna.pem
260s Adding debian:Certigna_Root_CA.pem
260s Adding debian:Certum_EC-384_CA.pem
260s Adding debian:Certum_Trusted_Network_CA.pem
260s Adding debian:Certum_Trusted_Network_CA_2.pem
260s Adding debian:Certum_Trusted_Root_CA.pem
260s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
260s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
260s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
260s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
260s Adding debian:Comodo_AAA_Services_root.pem
260s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
260s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
260s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
260s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
260s Adding debian:DigiCert_Assured_ID_Root_CA.pem
260s Adding debian:DigiCert_Assured_ID_Root_G2.pem
260s Adding debian:DigiCert_Assured_ID_Root_G3.pem
260s Adding debian:DigiCert_Global_Root_CA.pem
260s Adding debian:DigiCert_Global_Root_G2.pem
260s Adding debian:DigiCert_Global_Root_G3.pem
260s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
260s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
260s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
260s Adding debian:DigiCert_Trusted_Root_G4.pem
260s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
260s Adding debian:Entrust_Root_Certification_Authority.pem
260s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
260s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
260s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
260s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
260s Adding debian:GLOBALTRUST_2020.pem
260s Adding debian:GTS_Root_R1.pem
260s Adding debian:GTS_Root_R2.pem
260s Adding debian:GTS_Root_R3.pem
260s Adding debian:GTS_Root_R4.pem
260s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
260s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
260s Adding debian:GlobalSign_Root_CA.pem
260s Adding debian:GlobalSign_Root_CA_-_R3.pem
260s Adding debian:GlobalSign_Root_CA_-_R6.pem
260s Adding debian:GlobalSign_Root_E46.pem
260s Adding debian:GlobalSign_Root_R46.pem
260s Adding debian:Go_Daddy_Class_2_CA.pem
260s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
260s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
260s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
260s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
260s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
260s Adding debian:HiPKI_Root_CA_-_G1.pem
260s Adding debian:Hongkong_Post_Root_CA_3.pem
260s Adding debian:ISRG_Root_X1.pem
260s Adding debian:ISRG_Root_X2.pem
260s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
260s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
260s Adding debian:Izenpe.com.pem
260s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
260s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
260s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
260s Adding debian:NAVER_Global_Root_Certification_Authority.pem
260s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
260s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
260s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
260s Adding debian:QuoVadis_Root_CA_1_G3.pem
260s Adding debian:QuoVadis_Root_CA_2.pem
260s Adding debian:QuoVadis_Root_CA_2_G3.pem
260s Adding debian:QuoVadis_Root_CA_3.pem
260s Adding debian:QuoVadis_Root_CA_3_G3.pem
260s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
260s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
260s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
260s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
260s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
260s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
260s Adding debian:SZAFIR_ROOT_CA2.pem
260s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
260s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
260s Adding debian:SecureSign_RootCA11.pem
260s Adding debian:SecureTrust_CA.pem
260s Adding debian:Secure_Global_CA.pem
260s Adding debian:Security_Communication_ECC_RootCA1.pem
260s Adding debian:Security_Communication_RootCA2.pem
260s Adding debian:Security_Communication_RootCA3.pem
260s Adding debian:Security_Communication_Root_CA.pem
260s Adding debian:Starfield_Class_2_CA.pem
260s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
260s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
260s Adding debian:SwissSign_Gold_CA_-_G2.pem
260s Adding debian:SwissSign_Silver_CA_-_G2.pem
260s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
260s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
260s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
260s Adding debian:TWCA_Global_Root_CA.pem
260s Adding debian:TWCA_Root_Certification_Authority.pem
260s Adding debian:TeliaSonera_Root_CA_v1.pem
260s Adding debian:Telia_Root_CA_v2.pem
260s Adding debian:TrustAsia_Global_Root_CA_G3.pem
260s Adding debian:TrustAsia_Global_Root_CA_G4.pem
260s Adding debian:Trustwave_Global_Certification_Authority.pem
260s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
260s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
260s Adding debian:TunTrust_Root_CA.pem
260s Adding debian:UCA_Extended_Validation_Root.pem
260s Adding debian:UCA_Global_G2_Root.pem
260s Adding debian:USERTrust_ECC_Certification_Authority.pem
260s Adding debian:USERTrust_RSA_Certification_Authority.pem
260s Adding debian:XRamp_Global_CA_Root.pem
260s Adding debian:certSIGN_ROOT_CA.pem
260s Adding debian:certSIGN_Root_CA_G2.pem
260s Adding debian:e-Szigno_Root_CA_2017.pem
260s Adding debian:ePKI_Root_Certification_Authority.pem
260s Adding debian:emSign_ECC_Root_CA_-_C3.pem
260s Adding debian:emSign_ECC_Root_CA_-_G3.pem
260s Adding debian:emSign_Root_CA_-_C1.pem
260s Adding debian:emSign_Root_CA_-_G1.pem
260s Adding debian:vTrus_ECC_Root_CA.pem
260s Adding debian:vTrus_Root_CA.pem
260s done.
260s Setting up bbmap (39.06+dfsg-1) ...
260s Setting up autopkgtest-satdep (0) ...
273s (Reading database ... 61006 files and directories currently installed.)
273s Removing autopkgtest-satdep (0) ...
278s autopkgtest [11:06:48]: test run-unit-test: [-----------------------
280s 
280s #	bbmap
280s 	bbmap.sh --version
280s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
280s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 --version
280s BBMap version 39.06
280s For help, please run the shellscript with no parameters, or look in /docs/.
280s 	bbmap.sh --help
280s 	bbmap.sh ref=example.fasta
280s 
280s BBMap
280s Written by Brian Bushnell, from Dec. 2010 - present
280s Last modified September 15, 2022
280s 
280s Description:  Fast and accurate splice-aware read aligner.
280s Please read bbmap/docs/guides/BBMapGuide.txt for more information.
280s 
280s To index:     bbmap.sh ref=<reference fasta>
280s To map:       bbmap.sh in=<reads> out=<output sam>
280s To map without writing an index:
280s     bbmap.sh ref=<reference fasta> in=<reads> out=<output sam> nodisk
280s 
280s in=stdin will accept reads from standard in, and out=stdout will write to 
280s standard out, but file extensions are still needed to specify the format of the 
280s input and output files e.g. in=stdin.fa.gz will read gzipped fasta from 
280s standard in; out=stdout.sam.gz will write gzipped sam.
280s 
280s Indexing Parameters (required when building the index):
280s nodisk=f                Set to true to build index in memory and write nothing 
280s                         to disk except output.
280s ref=<file>              Specify the reference sequence.  Only do this ONCE, 
280s                         when building the index (unless using 'nodisk').
280s build=1                 If multiple references are indexed in the same directory,
280s                         each needs a unique numeric ID (unless using 'nodisk').
280s k=13                    Kmer length, range 8-15.  Longer is faster but uses 
280s                         more memory.  Shorter is more sensitive.
280s                         If indexing and mapping are done in two steps, K should
280s                         be specified each time.
280s path=<.>                Specify the location to write the index, if you don't 
280s                         want it in the current working directory.
280s usemodulo=f             Throw away ~80% of kmers based on remainder modulo a 
280s                         number (reduces RAM by 50% and sensitivity slightly).
280s                         Should be enabled both when building the index AND 
280s                         when mapping.
280s rebuild=f               Force a rebuild of the index (ref= should be set).
280s 
280s Input Parameters:
280s build=1                 Designate index to use.  Corresponds to the number 
280s                         specified when building the index.
280s in=<file>               Primary reads input; required parameter.
280s in2=<file>              For paired reads in two files.
280s interleaved=auto        True forces paired/interleaved input; false forces 
280s                         single-ended mapping. If not specified, interleaved 
280s                         status will be autodetected from read names.
280s fastareadlen=500        Break up FASTA reads longer than this.  Max is 500 for
280s                         BBMap and 6000 for BBMapPacBio.  Only works for FASTA
280s                         input (use 'maxlen' for FASTQ input).  The default for
280s                         bbmap.sh is 500, and for mapPacBio.sh is 6000.
280s unpigz=f                Spawn a pigz (parallel gzip) process for faster 
280s                         decompression than using Java.  
280s                         Requires pigz to be installed.
280s touppercase=t           (tuc) Convert lowercase letters in reads to upper case 
280s                         (otherwise they will not match the reference).
280s 
280s Sampling Parameters:
280s 
280s reads=-1                Set to a positive number N to only process the first N
280s                         reads (or pairs), then quit.  -1 means use all reads.
280s samplerate=1            Set to a number from 0 to 1 to randomly select that
280s                         fraction of reads for mapping. 1 uses all reads.
280s skipreads=0             Set to a number N to skip the first N reads (or pairs), 
280s                         then map the rest.
280s 
280s Mapping Parameters:
280s fast=f                  This flag is a macro which sets other paramters to run 
280s                         faster, at reduced sensitivity.  Bad for RNA-seq.
280s slow=f                  This flag is a macro which sets other paramters to run 
280s                         slower, at greater sensitivity.  'vslow' is even slower.
280s maxindel=16000          Don't look for indels longer than this. Lower is faster.
280s                         Set to >=100k for RNAseq with long introns like mammals.
280s strictmaxindel=f        When enabled, do not allow indels longer than 'maxindel'.
280s                         By default these are not sought, but may be found anyway.
280s tipsearch=100           Look this far for read-end deletions with anchors
280s                         shorter than K, using brute force.
280s minid=0.76              Approximate minimum alignment identity to look for. 
280s                         Higher is faster and less sensitive.
280s minhits=1               Minimum number of seed hits required for candidate sites.
280s                         Higher is faster.
280s local=f                 Set to true to use local, rather than global, alignments.
280s                         This will soft-clip ugly ends of poor alignments.
280s perfectmode=f           Allow only perfect mappings when set to true (very fast).
280s semiperfectmode=f       Allow only perfect and semiperfect (perfect except for 
280s                         N's in the reference) mappings.
280s threads=auto            (t) Set to number of threads desired.  By default, uses 
280s                         all cores available.
280s ambiguous=best          (ambig) Set behavior on ambiguously-mapped reads (with 
280s                         multiple top-scoring mapping locations).
280s                             best    (use the first best site)
280s                             toss    (consider unmapped)
280s                             random  (select one top-scoring site randomly)
280s                             all     (retain all top-scoring sites)
280s samestrandpairs=f       (ssp) Specify whether paired reads should map to the
280s                         same strand or opposite strands.
280s requirecorrectstrand=t  (rcs) Forbid pairing of reads without correct strand 
280s                         orientation.  Set to false for long-mate-pair libraries.
280s killbadpairs=f          (kbp) If a read pair is mapped with an inappropriate
280s                         insert size or orientation, the read with the lower  
280s                         mapping quality is marked unmapped.
280s pairedonly=f            (po) Treat unpaired reads as unmapped.  Thus they will 
280s                         be sent to 'outu' but not 'outm'.
280s rcomp=f                 Reverse complement both reads prior to mapping (for LMP
280s                         outward-facing libraries).
280s rcompmate=f             Reverse complement read2 prior to mapping.
280s pairlen=32000           Set max allowed distance between paired reads.  
280s                         (insert size)=(pairlen)+(read1 length)+(read2 length)
280s rescuedist=1200         Don't try to rescue paired reads if avg. insert size
280s                         greater than this.  Lower is faster.
280s rescuemismatches=32     Maximum mismatches allowed in a rescued read.  Lower
280s                         is faster.
280s averagepairdist=100     (apd) Initial average distance between paired reads.
280s                         Varies dynamically; does not need to be specified.
280s deterministic=f         Run in deterministic mode.  In this case it is good
280s                         to set averagepairdist.  BBMap is deterministic
280s                         without this flag if using single-ended reads,
280s                         or run singlethreaded.
280s bandwidthratio=0        (bwr) If above zero, restrict alignment band to this 
280s                         fraction of read length.  Faster but less accurate.
280s bandwidth=0             (bw) Set the bandwidth directly.
280s                         fraction of read length.  Faster but less accurate.
280s usejni=f                (jni) Do alignments faster, in C code.  Requires 
280s                         compiling the C code; details are in /jni/README.txt.
280s maxsites2=800           Don't analyze (or print) more than this many alignments 
280s                         per read.
280s ignorefrequentkmers=t   (ifk) Discard low-information kmers that occur often.
280s excludefraction=0.03    (ef) Fraction of kmers to ignore.  For example, 0.03
280s                         will ignore the most common 3% of kmers.
280s greedy=t                Use a greedy algorithm to discard the least-useful
280s                         kmers on a per-read basis.
280s kfilter=0               If positive, potential mapping sites must have at
280s                         least this many consecutive exact matches.
280s 
280s 
280s Quality and Trimming Parameters:
280s qin=auto                Set to 33 or 64 to specify input quality value ASCII
280s                         offset. 33 is Sanger, 64 is old Solexa.
280s qout=auto               Set to 33 or 64 to specify output quality value ASCII 
280s                         offset (only if output format is fastq).
280s qtrim=f                 Quality-trim ends before mapping.  Options are: 
280s                         'f' (false), 'l' (left), 'r' (right), and 'lr' (both).
280s untrim=f                Undo trimming after mapping.  Untrimmed bases will be 
280s                         soft-clipped in cigar strings.
280s trimq=6                 Trim regions with average quality below this 
280s                         (phred algorithm).
280s mintrimlength=60        (mintl) Don't trim reads to be shorter than this.
280s fakefastaquality=-1     (ffq) Set to a positive number 1-50 to generate fake
280s                         quality strings for fasta input reads.
280s ignorebadquality=f      (ibq) Keep going, rather than crashing, if a read has 
280s                         out-of-range quality values.
280s usequality=t            Use quality scores when determining which read kmers
280s                         to use as seeds.
280s minaveragequality=0     (maq) Do not map reads with average quality below this.
280s maqb=0                  If positive, calculate maq from this many initial bases.
280s 
280s Output Parameters:
280s out=<file>              Write all reads to this file.
280s outu=<file>             Write only unmapped reads to this file.  Does not 
280s                         include unmapped paired reads with a mapped mate.
280s outm=<file>             Write only mapped reads to this file.  Includes 
280s                         unmapped paired reads with a mapped mate.
280s mappedonly=f            If true, treats 'out' like 'outm'.
280s bamscript=<file>        (bs) dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
280s Write a shell script to <file> that will turn 
280s                         the sam output into a sorted, indexed bam file.
280s ordered=f               Set to true to output reads in same order as input.  
280s                         Slower and uses more memory.
280s overwrite=f             (ow) Allow process to overwrite existing files.
280s secondary=f             Print secondary alignments.
280s sssr=0.95               (secondarysitescoreratio) Print only secondary alignments
280s                         with score of at least this fraction of primary.
280s ssao=f                  (secondarysiteasambiguousonly) Only print secondary 
280s                         alignments for ambiguously-mapped reads.
280s maxsites=5              Maximum number of total alignments to print per read.
280s                         Only relevant when secondary=t.
280s quickmatch=f            Generate cigar strings more quickly.
280s trimreaddescriptions=f  (trd) Truncate read and ref names at the first whitespace,
280s                         assuming that the remainder is a comment or description.
280s ziplevel=2              (zl) Compression level for zip or gzip output.
280s pigz=f                  Spawn a pigz (parallel gzip) process for faster 
280s                         compression than Java.  Requires pigz to be installed.
280s machineout=f            Set to true to output statistics in machine-friendly 
280s                         'key=value' format.
280s printunmappedcount=f    Print the total number of unmapped reads and bases.
280s                         If input is paired, the number will be of pairs
280s                         for which both reads are unmapped.
280s showprogress=0          If positive, print a '.' every X reads.
280s showprogress2=0         If positive, print the number of seconds since the
280s                         last progress update (instead of a '.').
280s renamebyinsert=f        Renames reads based on their mapped insert size.
280s 
280s Bloom-Filtering Parameters (bloomfilter.sh is the standalone version).
280s bloom=f                 Use a Bloom filter to ignore reads not sharing kmers
280s                         with the reference.  This uses more memory, but speeds
280s                         mapping when most reads don't match the reference.
280s bloomhashes=2           Number of hash functions.
280s bloomminhits=3          Number of consecutive hits to be considered matched.
280s bloomk=31               Bloom filter kmer length.
280s bloomserial=t           Use the serialized Bloom filter for greater loading
280s                         speed, if available.  If not, generate and write one.
280s 
280s Post-Filtering Parameters:
280s idfilter=0              Independant of minid; sets exact minimum identity 
280s                         allowed for alignments to be printed.  Range 0 to 1.
280s subfilter=-1            Ban alignments with more than this many substitutions.
280s insfilter=-1            Ban alignments with more than this many insertions.
280s delfilter=-1            Ban alignments with more than this many deletions.
280s indelfilter=-1          Ban alignments with more than this many indels.
280s editfilter=-1           Ban alignments with more than this many edits.
280s inslenfilter=-1         Ban alignments with an insertion longer than this.
280s dellenfilter=-1         Ban alignments with a deletion longer than this.
280s nfilter=-1              Ban alignments with more than this many ns.  This 
280s                         includes nocall, noref, and off scaffold ends.
280s 
280s Sam flags and settings:
280s noheader=f              Disable generation of header lines.
280s sam=1.4                 Set to 1.4 to write Sam version 1.4 cigar strings, 
280s                         with = and X, or 1.3 to use M.
280s saa=t                   (secondaryalignmentasterisks) Use asterisks instead of
280s                         bases for sam secondary alignments.
280s cigar=t                 Set to 'f' to skip generation of cigar strings (faster).
280s keepnames=f             Keep original names of paired reads, rather than 
280s                         ensuring both reads have the same name.
280s intronlen=999999999     Set to a lower number like 10 to change 'D' to 'N' in 
280s                         cigar strings for deletions of at least that length.
280s rgid=                   Set readgroup ID.  All other readgroup fields 
280s                         can be set similarly, with the flag rgXX=
280s                         If you set a readgroup flag to the word 'filename',
280s                         e.g. rgid=filename, the input file name will be used.
280s mdtag=f                 Write MD tags.
280s nhtag=f                 Write NH tags.
280s xmtag=f                 Write XM tags (may only work correctly with ambig=all).
280s amtag=f                 Write AM tags.
280s nmtag=f                 Write NM tags.
280s xstag=f                 Set to 'xs=fs', 'xs=ss', or 'xs=us' to write XS tags 
280s                         for RNAseq using firststrand, secondstrand, or 
280s                         unstranded libraries.  Needed by Cufflinks.  
280s                         JGI mainly uses 'firststrand'.
280s stoptag=f               Write a tag indicating read stop location, prefixed by YS:i:
280s lengthtag=f             Write a tag indicating (query,ref) alignment lengths, 
280s                         prefixed by YL:Z:
280s idtag=f                 Write a tag indicating percent identity, prefixed by YI:f:
280s inserttag=f             Write a tag indicating insert size, prefixed by X8:Z:
280s scoretag=f              Write a tag indicating BBMap's raw score, prefixed by YR:i:
280s timetag=f               Write a tag indicating this read's mapping time, prefixed by X0:i:
280s boundstag=f             Write a tag indicating whether either read in the pair
280s                         goes off the end of the reference, prefixed by XB:Z:
280s notags=f                Turn off all optional tags.
280s 
280s Histogram and statistics output parameters:
280s scafstats=<file>        Statistics on how many reads mapped to which scaffold.
280s refstats=<file>         Statistics on how many reads mapped to which reference
280s                         file; only for BBSplit.
280s sortscafs=t             Sort scaffolds or references by read count.
280s bhist=<file>            Base composition histogram by position.
280s qhist=<file>            Quality histogram by position.
280s aqhist=<file>           Histogram of average read quality.
280s bqhist=<file>           Quality histogram designed for box plots.
280s lhist=<file>            Read length histogram.
280s ihist=<file>            Write histogram of insert sizes (for paired reads).
280s ehist=<file>            Errors-per-read histogram.
280s qahist=<file>           Quality accuracy histogram of error rates versus 
280s                         quality score.
280s indelhist=<file>        Indel length histogram.
280s mhist=<file>            Histogram of match, sub, del, and ins rates by 
280s                         read location.
280s gchist=<file>           Read GC content histogram.
280s gcbins=100              Number gchist bins.  Set to 'auto' to use read length.
280s gcpairs=t               Use average GC of paired reads.
280s idhist=<file>           Histogram of read count versus percent identity.
280s idbins=100              Number idhist bins.  Set to 'auto' to use read length.
280s statsfile=stderr        Mapping statistics are printed here.
280s 
280s Coverage output parameters (these may reduce speed and use more RAM):
280s covstats=<file>         Per-scaffold coverage info.
280s rpkm=<file>             Per-scaffold RPKM/FPKM counts.
280s covhist=<file>          Histogram of # occurrences of each depth level.
280s basecov=<file>          Coverage per base location.
280s bincov=<file>           Print binned coverage per location (one line per X bases).
280s covbinsize=1000         Set the binsize for binned coverage output.
280s nzo=t                   Only print scaffolds with nonzero coverage.
280s twocolumn=f             Change to true to print only ID and Avg_fold instead of 
280s                         all 6 columns to the 'out=' file.
280s 32bit=f                 Set to true if you need per-base coverage over 64k.
280s strandedcov=f           Track coverage for plus and minus strand independently.
280s startcov=f              Only track start positions of reads.
280s secondarycov=t          Include coverage of secondary alignments.
280s physcov=f               Calculate physical coverage for paired reads.
280s                         This includes the unsequenced bases.
280s delcoverage=t           (delcov) Count bases covered by deletions as covered.
280s                         True is faster than false.
280s covk=0                  If positive, calculate kmer coverage statistics.
280s 
280s Java Parameters:
280s -Xmx                    This will set Java's memory usage, 
280s                         overriding autodetection.
280s                         -Xmx20g will specify 20 gigs of RAM, and -Xmx800m 
280s                         will specify 800 megs.  The max is typically 85% of 
280s                         physical memory.  The human genome requires around 24g,
280s                         or 12g with the 'usemodulo' flag.  The index uses 
280s                         roughly 6 bytes per reference base.
280s -eoom                   This flag will cause the process to exit if an 
280s                         out-of-memory exception occurs.  Requires Java 8u92+.
280s -da                     Disable assertions.
280s 
280s Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter 
280s any problems, or post at: http://seqanswers.com/forums/showthread.php?t=41057
280s 
280s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 ref=example.fasta
280s Executing align2.BBMap [build=1, overwrite=true, fastareadlen=500, ref=example.fasta]
280s Version 39.06
280s 
280s No output file.
280s Writing reference.
280s Executing dna.FastaToChromArrays2 [example.fasta, 1, writeinthread=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670912, writechroms=true, minscaf=1, midpad=300, startpad=8000, stoppad=8000, nodisk=false]
280s 
280s Set genScaffoldInfo=true
280s Writing chunk 1
280s Set genome to 1
280s 
280s Loaded Reference:	0.010 seconds.
280s Loading index for chunk 1-1, build 1
280s No index available; generating from reference genome: /tmp/autopkgtest.F2jQ7E/autopkgtest_tmp/ref/index/1/chr1_index_k13_c16_b1.block
280s Indexing threads started for block 0-1
281s Indexing threads finished for block 0-1
282s Generated Index:	1.537 seconds.
282s No reads to process; quitting.
282s 
282s Total time:     	1.756 seconds.
282s 	test -d ref
282s 	bbmap.sh in=misc_dna_as_sanger.fastq out=out.sam
282s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
282s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 in=misc_dna_as_sanger.fastq out=out.sam
282s Executing align2.BBMap [build=1, overwrite=true, fastareadlen=500, in=misc_dna_as_sanger.fastq, out=out.sam]
282s Version 39.06
282s 
282s Retaining first best site only for ambiguous mappings.
282s Set genome to 1
282s 
282s Loaded Reference:	0.030 seconds.
282s Loading index for chunk 1-1, build 1
283s Generated Index:	0.656 seconds.
287s Analyzed Index:   	3.595 seconds.
287s Started output stream:	0.028 seconds.
287s Cleared Memory:    	0.113 seconds.
287s Processing reads in single-ended mode.
287s Started read stream.
287s Started 8 mapping threads.
287s Detecting finished threads: 0, 1, 2, 3, 4, 5, 6, 7
287s 
287s    ------------------   Results   ------------------   
287s 
287s Genome:                	1
287s Key Length:            	13
287s Max Indel:             	16000
287s Minimum Score Ratio:  	0.56
287s Mapping Mode:         	normal
287s Reads Used:           	4	(153 bases)
287s 
287s Mapping:          	0.124 seconds.
287s Reads/sec:       	32.29
287s kBases/sec:      	1.23
287s 
287s 
287s Read 1 data:      	pct reads	num reads 	pct bases	   num bases
287s 
287s mapped:          	  0.0000% 	        0 	  0.0000% 	           0
287s unambiguous:     	  0.0000% 	        0 	  0.0000% 	           0
287s ambiguous:       	  0.0000% 	        0 	  0.0000% 	           0
287s low-Q discards:  	 25.0000% 	        1 	 19.6078% 	          30
287s 
287s perfect best site:	  0.0000% 	        0 	  0.0000% 	           0
287s semiperfect site:	  0.0000% 	        0 	  0.0000% 	           0
287s 
287s Match Rate:      	      NA 	       NA 	     NaN% 	           0
287s Error Rate:      	     NaN% 	        0 	     NaN% 	           0
287s Sub Rate:        	     NaN% 	        0 	     NaN% 	           0
287s Del Rate:        	     NaN% 	        0 	     NaN% 	           0
287s Ins Rate:        	     NaN% 	        0 	     NaN% 	           0
287s N Rate:          	     NaN% 	        0 	     NaN% 	           0
287s 
287s Total time:     	4.666 seconds.
287s 	test -r out.sam
287s 	bbmap.sh ref=example.fasta in=example.fastq out=out2.sam nodisk
287s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
287s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar align2.BBMap build=1 overwrite=true fastareadlen=500 ref=example.fasta in=example.fastq out=out2.sam nodisk
287s Executing align2.BBMap [build=1, overwrite=true, fastareadlen=500, ref=example.fasta, in=example.fastq, out=out2.sam, nodisk]
287s Version 39.06
287s 
287s Retaining first best site only for ambiguous mappings.
287s Executing dna.FastaToChromArrays2 [example.fasta, 1, writeinthread=false, genscaffoldinfo=true, retain, waitforwriting=false, gz=true, maxlen=536670912, writechroms=false, minscaf=1, midpad=300, startpad=8000, stoppad=8000, nodisk=true]
287s 
287s Set genScaffoldInfo=true
287s Set genome to 1
287s 
287s Loaded Reference:	0.002 seconds.
287s Loading index for chunk 1-1, build 1
287s Indexing threads started for block 0-1
287s Indexing threads finished for block 0-1
287s Generated Index:	0.223 seconds.
291s Analyzed Index:   	3.396 seconds.
291s Started output stream:	0.025 seconds.
291s Cleared Memory:    	0.122 seconds.
291s Processing reads in single-ended mode.
291s Started read stream.
291s Started 8 mapping threads.
291s Detecting finished threads: 0, 1, 2, 3, 4, 5, 6, 7
291s 
291s    ------------------   Results   ------------------   
291s 
291s Genome:                	1
291s Key Length:            	13
291s Max Indel:             	16000
291s Minimum Score Ratio:  	0.56
291s Mapping Mode:         	normal
291s Reads Used:           	3	(75 bases)
291s 
291s Mapping:          	0.127 seconds.
291s Reads/sec:       	23.63
291s kBases/sec:      	0.59
291s 
291s 
291s Read 1 data:      	pct reads	num reads 	pct bases	   num bases
291s 
291s mapped:          	100.0000% 	        3 	100.0000% 	          75
291s unambiguous:     	100.0000% 	        3 	100.0000% 	          75
291s ambiguous:       	  0.0000% 	        0 	  0.0000% 	           0
291s low-Q discards:  	  0.0000% 	        0 	  0.0000% 	           0
291s 
291s perfect best site:	100.0000% 	        3 	100.0000% 	          75
291s semiperfect site:	100.0000% 	        3 	100.0000% 	          75
291s 
291s Match Rate:      	      NA 	       NA 	100.0000% 	          75
291s Error Rate:      	  0.0000% 	        0 	  0.0000% 	           0
291s Sub Rate:        	  0.0000% 	        0 	  0.0000% 	           0
291s Del Rate:        	  0.0000% 	        0 	  0.0000% 	           0
291s Ins Rate:        	  0.0000% 	        0 	  0.0000% 	           0
291s N Rate:          	  0.0000% 	        0 	  0.0000% 	           0
291s 
291s Total time:     	4.072 seconds.
291s 	test -r out2.sam
291s 
291s #	bbduk
291s 	bbduk.sh --version
291s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
291s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.BBDuk --version
292s BBMap version 39.06
292s 
292s Written by Brian Bushnell
292s Last modified November 9, 2023
292s 
292s Description:  Compares reads to the kmers in a reference dataset, optionally 
292s allowing an edit distance. Splits the reads into two outputs - those that 
292s match the reference, and those that don't. Can also trim (remove) the matching 
292s parts of the reads rather than binning the reads.
292s Please read bbmap/docs/guides/BBDukGuide.txt for more information.
292s 
292s Usage:  bbduk.sh in=<input file> out=<output file> ref=<contaminant files>
292s 
292s Input may be stdin or a fasta or fastq file, compressed or uncompressed.
292s If you pipe via stdin/stdout, please include the file type; e.g. for gzipped 
292s fasta input, set in=stdin.fa.gz
292s 
292s Input parameters:
292s in=<file>           Main input. in=stdin.fq will pipe from stdin.
292s in2=<file>          Input for 2nd read of pairs in a different file.
292s ref=<file,file>     Comma-delimited list of reference files.
292s                     In addition to filenames, you may also use the keywords:
292s                     adapters, artifacts, phix, lambda, pjet, mtst, kapa
292s literal=<seq,seq>   Comma-delimited list of literal reference sequences.
292s touppercase=f       (tuc) Change all bases upper-case.
292s interleaved=auto    (int) t/f overrides interleaved autodetection.
292s                     Must be set mainually when streaming fastq input.
292s qin=auto            Input quality offset: 33 (Sanger), 64, or auto.
292s reads=-1            If positive, quit after processing X reads or pairs.
292s copyundefined=f     (cu) Process non-AGCT IUPAC reference bases by making all
292s                     possible unambiguous copies.  Intended for short motifs
292s                     or adapter barcodes, as time/memory use is exponential.
292s samplerate=1        Set lower to only process a fraction of input reads.
292s samref=<file>       Optional reference fasta for processing sam files.
292s 
292s Output parameters:
292s out=<file>          (outnonmatch) Write reads here that do not contain 
292s                     kmers matching the database.  'out=stdout.fq' will pipe 
292s                     to standard out.
292s out2=<file>         (outnonmatch2) Use this to write 2nd read of pairs to a 
292s                     different file.
292s outm=<file>         (outmatch) Write reads here that fail filters.  In default
292s                     kfilter mode, this means any read with a matching kmer.
292s                     In any mode, it also includes reads that fail filters such
292s                     as minlength, mingc, maxgc, entropy, etc.  In other words,
292s                     it includes all reads that do not go to 'out'.
292s outm2=<file>        (outmatch2) Use this to write 2nd read of pairs to a 
292s                     different file.
292s outs=<file>         (outsingle) Use this to write singleton reads whose mate 
292s                     was trimmed shorter than minlen.
292s stats=<file>        Write statistics about which contamininants were detected.
292s refstats=<file>     Write statistics on a per-reference-file basis.
292s rpkm=<file>         Write RPKM for each reference sequence (for RNA-seq).
292s dump=<file>         Dump kmer tables to a file, in fasta format.
292s duk=<file>          Write statistics in duk's format. *DEPRECATED*
292s nzo=t               Only write statistics about ref sequences with nonzero hits.
292s overwrite=t         (ow) Grant permission to overwrite files.
292s showspeed=t         (ss) 'f' suppresses display of processing speed.
292s ziplevel=2          (zl) Compression level; 1 (min) through 9 (max).
292s fastawrap=70        Length of lines in fasta output.
292s qout=auto           Output quality offset: 33 (Sanger), 64, or auto.
292s statscolumns=3      (cols) Number of columns for stats output, 3 or 5.
292s                     5 includes base counts.
292s rename=f            Rename reads to indicate which sequences they matched.
292s refnames=f          Use names of reference files rather than scaffold IDs.
292s trd=f               Truncate read and ref names at the first whitespace.
292s ordered=f           Set to true to output reads in same order as input.
292s maxbasesout=-1      If positive, quit after writing approximately this many
292s                     bases to out (outu/outnonmatch).
292s maxbasesoutm=-1     If positive, qFor help, please run the shellscript with no parameters, or look in /docs/.
292s 	bbduk.sh --help
292s 	bbduk.sh in1=misc_dna_as_illumina.fastq in2=misc_rna_as_illumina.fastq \
292s 		qtrim=rl trimq=15 minlen=75 out=out.fastq.gz
292s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
292s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.BBDuk in1=misc_dna_as_illumina.fastq in2=misc_rna_as_illumina.fastq qtrim=rl trimq=15 minlen=75 out=out.fastq.gz
292s uit after writing approximately this many
292s                     bases to outm (outmatch).
292s json=f              Print to screen in json format.
292s 
292s Histogram output parameters:
292s bhist=<file>        Base composition histogram by position.
292s qhist=<file>        Quality histogram by position.
292s qchist=<file>       Count of bases with each quality value.
292s aqhist=<file>       Histogram of average read quality.
292s bqhist=<file>       Quality histogram designed for box plots.
292s lhist=<file>        Read length histogram.
292s phist=<file>        Polymer length histogram.
292s gchist=<file>       Read GC content histogram.
292s enthist=<file>      Read entropy histogram.
292s ihist=<file>        Insert size histogram, for paired reads in mapped sam.
292s gcbins=100          Number gchist bins.  Set to 'auto' to use read length.
292s maxhistlen=6000     Set an upper bound for histogram lengths; higher uses 
292s                     more memory.  The default is 6000 for some histograms
292s                     and 80000 for others.
292s 
292s Histograms for mapped sam/bam files only:
292s histbefore=t        Calculate histograms from reads before processing.
292s ehist=<file>        Errors-per-read histogram.
292s qahist=<file>       Quality accuracy histogram of error rates versus quality 
292s                     score.
292s indelhist=<file>    Indel length histogram.
292s mhist=<file>        Histogram of match, sub, del, and ins rates by position.
292s idhist=<file>       Histogram of read count versus percent identity.
292s idbins=100          Number idhist bins.  Set to 'auto' to use read length.
292s varfile=<file>      Ignore substitution errors listed in this file when 
292s                     calculating error rates.  Can be generated with
292s                     CallVariants.
292s vcf=<file>          Ignore substitution errors listed in this VCF file 
292s                     when calculating error rates.
292s ignorevcfindels=t   Also ignore indels listed in the VCF.
292s 
292s Processing parameters:
292s k=27                Kmer length used for finding contaminants.  Contaminants 
292s                     shorter than k will not be found.  k must be at least 1.
292s rcomp=t             Look for reverse-complements of kmers in addition to 
292s                     forward kmers.
292s maskmiddle=t        (mm) Treat the middle base of a kmer as a wildcard, to 
292s                     increase sensitivity in the presence of errors.  This may
292s                     also be set to a number, e.g. mm=3, to mask that many bp.
292s                     The default mm=t corresponds to mm=1 for odd-length kmers
292s                     and mm=2 for even-length kmers (as of v39.04), while
292s                     mm=f is always equivalent to mm=0.
292s minkmerhits=1       (mkh) Reads need at least this many matching kmers 
292s                     to be considered as matching the reference.
292s minkmerfraction=0.0 (mkf) A reads needs at least this fraction of its total
292s                     kmers to hit a ref, in order to be considered a match.
292s                     If this and minkmerhits are set, the greater is used.
292s mincovfraction=0.0  (mcf) A reads needs at least this fraction of its total
292s                     bases to be covered by ref kmers to be considered a match.
292s                     If specified, mcf overrides mkh and mkf.
292s hammingdistance=0   (hdist) Maximum Hamming distance for ref kmers (subs only).
292s                     Memory use is proportional to (3*K)^hdist.
292s qhdist=0            Hamming distance for query kmers; impacts speed, not memory.
292s editdistance=0      (edist) Maximum edit distance from ref kmers (subs 
292s                     and indels).  Memory use is proportional to (8*K)^edist.
292s hammingdistance2=0  (hdist2) Sets hdist for short kmers, when using mink.
292s qhdist2=0           Sets qhdist for short kmers, when using mink.
292s editdistance2=0     (edist2) Sets edist for short kmers, when using mink.
292s forbidn=f           (fn) Forbids matching of read kmers containing N.
292s                     By default, these will match a reference 'A' if 
292s                     hdist>0 or edist>0, to increase sensitivity.
292s removeifeitherbad=t (rieb) Paired reads get sent to 'outmatch' if either is 
292s                     match (or either is trimmed shorter than minlen).  
292s                     Set to false to require both.
292s trimfailures=f      Instead of discarding failed reads, trim them to 1bp.
292s                     This makes the statistics a bit odd.
292s findbestmatch=f     (fbm) If multiple matches, associate read with sequence 
292s                     sharing most kmers.  Reduces speed.
292s skipr1=f            Don't do kmer-based operations on read 1.
292s skipr2=f            Don't do kmer-based operations on read 2.
292s ecco=f              For overlapping paired reads only.  Performs error-
292s                     correction with BBMerge prior to kmer operations.
292s recalibrate=f       (recal) Recalibrate quality scores.  Requires calibration
292s                     matrices generated by CalcTrueQuality.
292s sam=<file,file>     If recalibration is desired, and matrices have not already
292s                     been generated, BBDuk will create them from the sam file.
292s amino=f             Run in amino acid mode.  Some features have not been
292s                     tested, but kmer-matching works fine.  Maximum k is 12.
292s 
292s Speed and Memory parameters:
292s threads=auto        (t) Set number of threads to use; default is number of 
292s                     logical processors.
292s prealloc=f          Preallocate memory in table.  Allows faster table loading 
292s                     and more efficient memory usage, for a large reference.
292s monitor=f           Kill this process if it crashes.  monitor=600,0.01 would 
292s                     kill after 600 seconds under 1% usage.
292s minrskip=1          (mns) Force minimal skip interval when indexing reference 
292s                     kmers.  1 means use all, 2 means use every other kmer, etc.
292s maxrskip=1          (mxs) Restrict maximal skip interval when indexing 
292s                     reference kmers. Normally all are used for scaffolds<100kb, 
292s                     but with longer scaffolds, up to maxrskip-1 are skipped.
292s rskip=              Set both minrskip and maxrskip to the same value.
292s                     If not set, rskip will vary based on sequence length.
292s qskip=1             Skip query kmers to increase speed.  1 means use all.
292s speed=0             Ignore this fraction of kmer space (0-15 out of 16) in both
292s                     reads and reference.  Increases speed and reduces memory.
292s Note: Do not use more than one of 'speed', 'qskip', and 'rskip'.
292s 
292s Trimming/Filtering/Masking parameters:
292s Note - if ktrim, kmask, and ksplit are unset, the default behavior is kfilter.
292s All kmer processing modes are mutually exclusive.
292s Reads only get sent to 'outm' purely based on kmer matches in kfilter mode.
292s 
292s ktrim=f             Trim reads to remove bases matching reference kmers, plus
292s                     all bases to the left or right.
292s                     Values: 
292s                        f (don't trim), 
292s                        r (trim to the right), 
292s                        l (trim to the left)
292s ktrimtips=0         Set this to a positive number to perform ktrim on both
292s                     ends, examining only the outermost X bases.
292s kmask=              Replace bases matching ref kmers with another symbol.
292s                     Allows any non-whitespace character, and processes short
292s                     kmers on both ends if mink is set.  'kmask=lc' will
292s                     convert masked bases to lowercase.
292s maskfullycovered=f  (mfc) Only mask bases that are fully covered by kmers.
292s ksplit=f            For single-ended reads only.  Reads will be split into
292s                     pairs around the kmer.  If the kmer is at the end of the
292s                     read, it will be trimmed instead.  Singletons will go to
292s                     out, and pairs will go to outm.  Do not use ksplit with
292s                     other operations such as quality-trimming or filtering.
292s mink=0              Look for shorter kmers at read tips down to this length, 
292s                     when k-trimming or masking.  0 means disabled.  Enabling
292s                     this will disable maskmiddle.
292s qtrim=f             Trim read ends to remove bases with quality below trimq.
292s                     Performed AFTER looking for kmers.  Values: 
292s                        rl (trim both ends), 
292s                        f (neither end), 
292s                        r (right end only), 
292s                        l (left end only),
292s                        w (sliding window).
292s trimq=6             Regions with average quality BELOW this will be trimmed,
292s                     if qtrim is set to something other than f.  Can be a 
292s                     floating-point number like 7.3.
292s trimclip=f          Trim soft-clipped bases from sam files.
292s minlength=10        (ml) Reads shorter than this after trimming will be 
292s                     discarded.  Pairs will be discarded if both are shorter.
292s mlf=0               (minlengthfraction) Reads shorter than this fraction of 
292s                     original length after trimming will be discarded.
292s maxlength=          Reads longer than this after trimming will be discarded.
292s minavgquality=0     (maq) Reads with average quality (after trimming) below 
292s                     this will be discarded.
292s maqb=0              If positive, calculate maq from this many initial bases.
292s minbasequality=0    (mbq) Reads with any base below this quality (after 
292s                     trimming) will be discarded.
292s maxns=-1            If non-negative, reads with more Ns than this 
292s                     (after trimming) will be discarded.
292s mcb=0               (minconsecutivebases) Discard reads without at least 
292s                     this many consecutive called bases.
292s ottm=f              (outputtrimmedtomatch) Output reads trimmed to shorter 
292s                     than minlength to outm rather than discarding.
292s tp=0                (trimpad) Trim this much extra around matching kmers.
292s tbo=f               (trimbyoverlap) Trim adapters based on where paired 
292s                     reads overlap.
292s strictoverlap=t     Adjust sensitivity for trimbyoverlap mode.
292s minoverlap=14       Require this many bases of overlap for detection.
292s mininsert=40        Require insert size of at least this for overlap.
292s                     Should be reduced to 16 for small RNA sequencing.
292s tpe=f               (trimpairsevenly) When kmer right-trimming, trim both 
292s                     reads to the minimum length of either.
292s forcetrimleft=0     (ftl) If positive, trim bases to the left of this position
292s                     (exclusive, 0-based).
292s forcetrimright=0    (ftr) If positive, trim bases to the right of this position
292s                     (exclusive, 0-based).
292s forcetrimright2=0   (ftr2) If positive, trim this many bases on the right end.
292s forcetrimmod=0      (ftm) If positive, right-trim length to be equal to zero,
292s                     modulo this number.
292s restrictleft=0      If positive, only look for kmer matches in the 
292s                     leftmost X bases.
292s restrictright=0     If positive, only look for kmer matches in the 
292s                     rightmost X bases.
292s NOTE:  restrictleft and restrictright are mutually exclusive.  If trimming
292s        both ends is desired, use ktrimtips.
292s mingc=0             Discard reads with GC content below this.
292s maxgc=1             Discard reads with GC content above this.
292s gcpairs=t           Use average GC of paired reads.
292s                     Also affects gchist.
292s tossjunk=f          Discard reads with invalid characters as bases.
292s swift=f             Trim Swift sequences: Trailing C/T/N R1, leading G/A/N R2.
292s 
292s Header-parsing parameters - these require Illumina headers:
292s chastityfilter=f    (cf) Discard reads with id containing ' 1:Y:' or ' 2:Y:'.
292s barcodefilter=f     Remove reads with unexpected barcodes if barcodes is set,
292s                     or barcodes containing 'N' otherwise.  A barcode must be
292s                     the last part of the read header.  Values:
292s                        t:     Remove reads with bad barcodes.
292s                        f:     Ignore barcodes.
292s                        crash: Crash upon encountering bad barcodes.
292s barcodes=           Comma-delimited list of barcodes or files of barcodes.
292s xmin=-1             If positive, discard reads with a lesser X coordinate.
292s ymin=-1             If positive, discard reads with a lesser Y coordinate.
292s xmax=-1             If positive, discard reads with a greater X coordinate.
292s ymax=-1             If positive, discard reads with a greater Y coordinate.
292s 
292s Polymer trimming:
292s trimpolya=0         If greater than 0, trim poly-A or poly-T tails of
292s                     at least this length on either end of reads.
292s trimpolygleft=0     If greater than 0, trim poly-G prefixes of at least this
292s                     length on the left end of reads.  Does not trim poly-C.
292s trimpolygright=0    If greater than 0, trim poly-G tails of at least this 
292s                     length on the right end of reads.  Does not trim poly-C.
292s trimpolyg=0         This sets both left and right at once.
292s filterpolyg=0       If greater than 0, remove reads with a poly-G prefix of
292s                     at least this length (on the left).
292s Note: there are also equivalent poly-C flags.
292s 
292s Polymer tracking:
292s pratio=base,base    'pratio=G,C' will print the ratio of G to C polymers.
292s plen=20             Length of homopolymers to count.
292s 
292s Entropy/Complexity parameters:
292s entropy=-1          Set between 0 and 1 to filter reads with entropy below
292s                     that value.  Higher is more stringent.
292s entropywindow=50    Calculate entropy using a sliding window of this length.
292s entropyk=5          Calculate entropy using kmers of this length.
292s minbasefrequency=0  Discard reads with a minimum base frequency below this.
292s entropytrim=f       Values:
292s                        f:  (false) Do not entropy-trim.
292s                        r:  (right) Trim low entropy on the right end only.
292s                        l:  (left) Trim low entropy on the left end only.
292s                        rl: (both) Trim low entropy on both ends.
292s entropymask=f       Values:
292s                        f:  (filter) Discard low-entropy sequences.
292s                        t:  (true) Mask low-entropy parts of sequences with N.
292s                        lc: Change low-entropy parts of sequences to lowercase.
292s entropymark=f       Mark each base with its entropy value.  This is on a scale
292s                     of 0-41 and is reported as quality scores, so the output
292s                     should be fastq or fasta+qual.
292s NOTE: If set, entropytrim overrides entropymask.
292s 
292s Cardinality estimation:
292s cardinality=f       (loglog) Count unique kmers using the LogLog algorithm.
292s cardinalityout=f    (loglogout) Count unique kmers in output reads.
292s loglogk=31          Use this kmer length for counting.
292s loglogbuckets=2048  Use this many buckets for counting.
292s khist=<file>        Kmer frequency histogram; plots number of kmers versus
292s                     kmer depth.  This is approximate.
292s khistout=<file>     Kmer frequency histogram for output reads.
292s 
292s Java Parameters:
292s 
292s -Xmx                This will set Java's memory usage, overriding autodetection.
292s                     -Xmx20g will 
292s                     specify 20 gigs of RAM, and -Xmx200m will specify 200 megs.  
292s                     The max is typically 85% of physical memory.
292s -eoom               This flag will cause the process to exit if an 
292s                     out-of-memory exception occurs.  Requires Java 8u92+.
292s -da                 Disable assertions.
292s 
292s Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter any problems.
292s 
292s Executing jgi.BBDuk [in1=misc_dna_as_illumina.fastq, in2=misc_rna_as_illumina.fastq, qtrim=rl, trimq=15, minlen=75, out=out.fastq.gz]
292s Version 39.06
292s 
292s 0.016 seconds.
292s Initial:
292s Memory: max=2306m, total=2306m, free=2287m, used=19m
292s 
292s Input is being processed as paired
292s Changed from ASCII-33 to ASCII-64 on input 7: 55 -> 24
292s Changed from ASCII-33 to ASCII-64 on input 7: 55 -> 24
292s Started output streams:	0.021 seconds.
292s Processing time:   		0.005 seconds.
292s 
292s Input:                  	8 reads 		306 bases.
292s QTrimmed:               	0 reads (0.00%) 	0 bases (0.00%)
292s Total Removed:          	8 reads (100.00%) 	306 bases (100.00%)
292s Result:                 	0 reads (0.00%) 	0 bases (0.00%)
292s 
292s Time:                         	0.028 seconds.
292s Reads Processed:           8 	0.29k reads/sec
292s Bases Processed:         306 	0.01m bases/sec
292s 	test -r out.fastq.gz
292s 
292s #	bbnorm
292s 	bbnorm.sh --version
292s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
292s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.KmerNormalize bits=32 --version
292s BBMap version 39.06
292s For help, please run the shellscript with no parameters, or look in /docs/.
292s 	bbnorm.sh --help
292s 
292s Written by Brian Bushnell
292s Last modified October 19, 2017
292s 
292s Description:  Normalizes read depth based on kmer counts.
292s Can also error-correct, bin reads by kmer depth, and generate a kmer depth histogram.
292s However, Tadpole has superior error-correction to BBNorm.
292s Please read bbmap/docs/guides/BBNormGuide.txt for more information.
292s 
292s Usage:     bbnorm.sh in=<input> out=<reads to keep> outt=<reads to toss> hist=<histogram output>
292s 
292s Input parameters:
292s in=null             Primary input.  Use in2 for paired reads in a second file
292s in2=null            Second input file for paired reads in two files
292s extra=null          Additional files to use for input (generating hash table) but not for output
292s fastareadlen=2^31   Break up FASTA reads longer than this.  Can be useful when processing scaffolded genomes
292s tablereads=-1       Use at most this many reads when building the hashtable (-1 means all)
292s kmersample=1        Process every nth kmer, and skip the rest
292s readsample=1        Process every nth read, and skip the rest
292s interleaved=auto    May be set to true or false to force the input read file to ovverride autodetection of the input file as paired interleaved.
292s qin=auto            ASCII offset for input quality.  May be 33 (Sanger), 64 (Illumina), or auto.
292s 
292s Output parameters:
292s out=<file>          File for normalized or corrected reads.  Use out2 for paired reads in a second file
292s outt=<file>         (outtoss) File for reads that were excluded from primary output
292s reads=-1            Only process this number of reads, then quit (-1 means all)
292s sampleoutput=t      Use sampling on output as well as input (not used if sample rates are 1)
292s keepall=f           Set to true to keep all reads (e.g. if you just want error correction).
292s zerobin=f           Set to true if you want kmers with a count of 0 to go in the 0 bin instead of the 1 bin in histograms.
292s                     Default is false, to prevent confusion about how there can be 0-count kmers.
292s                     The reason is that based on the 'minq' and 'minprob' settings, some kmers may be excluded from the bloom filter.
292s tmpdir=      This will specify a directory for temp files (only needed for multipass runs).  If null, they will be written to the output directory.
292s usetempdir=t        Allows enabling/disabling of temporary directory; if disabled, temp files will be written to the output directory.
292s qout=auto           ASCII offset for output quality.  May be 33 (Sanger), 64 (Illumina), or auto (same as input).
292s rename=f            Rename reads based on their kmer depth.
292s 
292s Hashing parameters:
292s k=31                Kmer length (values under 32 are most efficient, but arbitrarily high values are supported)
292s bits=32             Bits per cell in bloom filter; must be 2, 4, 8, 16, or 32.  Maximum kmer depth recorded is 2^cbits.  Automatically reduced to 16 in 2-pass.
292s                     Large values decrease accuracy for a fixed amount of memory, so use the lowest number you can that will still capture highest-depth kmers.
292s hashes=3            Number of times each kmer is hashed and stored.  Higher is slower.
292s                     Higher is MORE accurate if there is enough memory, and LESS accurate if there is not enough memory.
292s prefilter=f         True is slower, but generally more accurate; filters out low-depth kmers from the main hashtable.  The prefilter is more memory-efficient because it uses 2-bit cells.
292s prehashes=2         Number of hashes for prefilter.
292s prefilterbits=2     (pbits) Bits per cell in prefilter.
292s prefiltersize=0.35  Fraction of memory to allocate to prefilter.
292s buildpasses=1       More passes can sometimes increase accuracy by iteratively removing low-depth kmers
292s minq=6              Ignore kmers containing bases with quality below this
292s minprob=0.5         Ignore kmers with overall probability of correctness below this
292s threads=auto        (t) Spawn exactly X hashing threads (default is number of logical processors).  Total active threads may exceed X due to I/O threads.
292s rdk=t               (removeduplicatekmers) When true, a kmer's count will only be incremented once per read pair, even if that kmer occurs more than once.
292s 
292s Normalization parameters:
292s fixspikes=f         (fs) Do a slower, high-precision bloom filter lookup of kmers that appear to have an abnormally high depth due to collisions.
292s target=100          (tgt) Target normalization depth.  NOTE:  All depth parameters control kmer depth, not read depth.
292s                     For kmer depth Dk, read depth Dr, read length R, and kmer size K:  Dr=Dk*(R/(R-K+1))
292s maxdepth=-1         (max) Reads will not be downsampled when below this depth, even if they are above the target depth.            
292s mindepth=5          (min) Kmers with depth below this number will not be included when calculating the depth of a read.
292s minkmers=15         (mgkpr) Reads must have at least this many kmers over min depth to be retained.  Aka 'mingoodkmersperread'.
292s percentile=54.0     (dp) Read depth is by default inferred from the 54th percentile of kmer depth, but this may be changed to any number 1-100.
292s uselowerdepth=t     (uld) For pairs, use the depth of the lower read as the depth proxy.
292s deterministic=t     (dr) Generate random numbers deterministically to ensure identical output between multiple runs.  May decrease speed with a huge number of threads.
292s passes=2            (p) 1 pass is the basic mode.  2 passes (default) allows greater accuracy, error detection, better contol of output depth.
292s 
292s Error detection parameters:
292s hdp=90.0            (highdepthpercentile) Position in sorted kmer depth array used as proxy of a read's high kmer depth.
292s ldp=25.0            (lowdepthpercentile) Position in sorted kmer depth array used as proxy of a read's low kmer depth.
292s tossbadreads=f      (tbr) Throw away reads detected as containing errors.
292s requirebothbad=f    (rbb) Only toss bad pairs if both reads are bad.
292s errordetectratio=125   (edr) Reads with a ratio of at least this much between their high and low depth kmers will be classified as error reads.
292s highthresh=12       (ht) Threshold for high kmer.  A high kmer at this or above are considered non-error.
292s lowthresh=3         (lt) Threshold for low kmer.  Kmers at this and below are always considered errors.
292s 
292s Error correction parameters:
292s ecc=f               Set to true to correct errors.  NOTE: Tadpole is now preferred for ecc as it does a better job.
292s ecclimit=3          Correct up to this many errors per read.  If more are detected, the read will remain unchanged.
292s errorcorrectratio=140  (ecr) Adjacent kmers with a depth ratio of at least this much between will be classified as an error.
292s echighthresh=22     (echt) Threshold for high kmer.  A kmer at this or above may be considered non-error.
292s eclowthresh=2       (eclt) Threshold for low kmer.  Kmers at this and below are considered errors.
292s eccmaxqual=127      Do not correct bases with quality above this value.
292s aec=f               (aggressiveErrorCorrection) Sets more aggressive values of ecr=100, ecclimit=7, echt=16, eclt=3.
292s cec=f               (conservativeErrorCorrection) Sets more conservative values of ecr=180, ecclimit=2, echt=30, eclt=1, sl=4, pl=4.
292s meo=f               (markErrorsOnly) Marks errors by reducing quality value of suspected errors; does not correct anything.
292s mue=t               (markUncorrectableErrors) Marks errors only on uncorrectable reads; requires 'ecc=t'.
292s overlap=f           (ecco) Error correct by read overlap.
292s 
292s Depth binning parameters:
292s lowbindepth=10      (lbd) Cutoff for low depth bin.
292s highbindepth=80     (hbd) Cutoff for high depth bin.
292s outlow=<file>       Pairs in which both reads have a median below lbd go into this file.
292s outhigh=<file>      Pairs in which both reads have a median above hbd go into this file.
292s outmid=<file>       All other pairs go into this file.
292s 
292s Histogram parameters:
292s hist=<file>         Specify a file to write the input kmer depth histogram.
292s histout=<file>      Specify a file to write the output kmer depth histogram.
292s histcol=3           (histogramcolumns) Number of histogram columns, 2 or 3.
292s pzc=f               (printzerocoverage) Print lines in the histogram with zero coverage.
292s histlen=1048576     Max kmer depth displayed in histogram.  Also affects statistics displayed, but does not affect normalization.
292s 
292s Peak calling parameters:
292s peaks=<file>        Write the peaks to this file.  Default is stdout.
292s minHeight=2         (h) Ignore peaks shorter than this.
292s minVolume=5         (v) Ignore peaks with less area than this.
292s minWidth=3          (w) Ignore peaks narrower than this.
292s minPeak=2           (minp) Ignore peaks with an X-value below this.
292s maxPeak=BIG         (maxp) Ignore peaks with an X-value above this.
292s maxPeakCount=8      (maxpc) Print up to this many peaks (prioritizing height).
292s 
292s Java Parameters:
292s -Xmx                This will set Java's memory usage, overriding autodetection.
292s                     -Xmx20g will specify 20 gigs of RAM, and -Xmx200m will specify 200 megs.
292s                     The max is typically 85% of physical memory.
292s -eoom               This flag will cause the process to exit if an
292s                     out-of-memory exception occurs.  Requires Java 8u92+.
292s -da                 Disable assertions.
292s 
292s Please contact Brian Bushnell at bbushnell@lbl.gov if you encounter any problems.
292s 
292s 	bbnorm.sh in=sanger_full_range_original_sanger.fastq qin=33 \
292s 		out=out3.fastq outt=outt.fastq hist=hist.plt
292s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
292s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.KmerNormalize bits=32 in=sanger_full_range_original_sanger.fastq qin=33 out=out3.fastq outt=outt.fastq hist=hist.plt
292s Executing jgi.KmerNormalize [bits=32, in=sanger_full_range_original_sanger.fastq, qin=33, out=out3.fastq, outt=outt.fastq, hist=hist.plt]
292s 
292s 
292s    ***********   Pass 1   **********   
292s 
292s 
292s Settings:
292s threads:          	8
292s k:                	31
292s deterministic:    	true
292s toss error reads: 	false
292s passes:           	1
292s bits per cell:    	16
292s cells:            	806.44M
292s hashes:           	3
292s base min quality: 	5
292s kmer min prob:    	0.5
292s 
292s target depth:     	400
292s min depth:        	3
292s max depth:        	500
292s min good kmers:   	15
292s depth percentile: 	64.8
292s ignore dupe kmers:	true
292s fix spikes:       	false
292s histogram length: 	65536
292s print zero cov:   	false
292s 
293s Made hash table:  	hashes = 3   	 mem = 1.50 GB   	cells = 806.41M   	used = 0.000%
293s 
293s Estimated unique kmers:     	7
293s 
293s Table creation time:		0.575 seconds.
293s Started output threads.
293s Started output threads.
293s Table read time: 		0.010 seconds.   	18.80 kb/sec
293s Total reads in:  		2        	0.000% Kept
293s Total bases in:  		188        	0.000% Kept
293s Error reads in:  		2        	100.000%
293s Error type 1:    		2        	100.000%
293s Error type 2:    		0        	0.000%
293s Error type 3:    		0        	0.000%
293s 
293s Wrote histogram to hist.plt
293s Total kmers counted:          	128
293s Total unique kmer count:      	128
293s Includes forward kmers only.
293s The unique kmer estimate can be more accurate than the unique count, if the tables are very full.
293s The most accurate value is the greater of the two.
293s 
293s Percent unique:               	100.00%
293s Depth average:                	1.00	(unique kmers)
293s Depth median:                 	1	(unique kmers)
293s Depth standard deviation:     	0.00	(unique kmers)
293s Corrected depth average:      	0.00	
293s 
293s Depth average:                	1.00	(all kmers)
293s Depth median:                 	1	(all kmers)
293s Depth standard deviation:     	0.00	(all kmers)
293s 
293s Approx. read depth median:    	1.47
293s 
293s    ***********   Pass 2   **********   
293s 
293s 
293s Settings:
293s threads:          	8
293s k:                	31
293s deterministic:    	true
293s toss error reads: 	false
293s passes:           	1
293s bits per cell:    	16
293s cells:            	806.44M
293s hashes:           	3
293s base min quality: 	5
293s kmer min prob:    	0.5
293s 
293s target depth:     	100
293s min depth:        	5
293s max depth:        	100
293s min good kmers:   	15
293s depth percentile: 	54.0
293s ignore dupe kmers:	true
293s fix spikes:       	false
293s histogram length: 	65536
293s 
293s Made hash table:  	hashes = 3   	 mem = 1.50 GB   	cells = 806.41M   	used = 0.000%
293s 
293s Estimated unique kmers:     	0
293s 
293s Table creation time:		0.301 seconds.
293s Started output threads.
293s Started output threads.
293s Table read time: 		0.003 seconds.   	0.00 kb/sec
293s Total reads in:  		0        	NaN% Kept
293s Total bases in:  		0        	NaN% Kept
293s Error reads in:  		0        	NaN%
293s Error type 1:    		0        	NaN%
293s Error type 2:    		0        	NaN%
293s Error type 3:    		0        	NaN%
293s Total kmers counted:          	0
293s Total unique kmer count:      	0
293s Includes forward kmers only.
293s The unique kmer estimate can be more accurate than the unique count, if the tables are very full.
293s The most accurate value is the greater of the two.
293s 
293s Percent unique:               	NaN%
293s Depth average:                	NaN	(unique kmers)
293s Depth median:                 	0	(unique kmers)
293s Depth standard deviation:     	NaN	(unique kmers)
293s Corrected depth average:      	NaN	
293s 
293s Depth average:                	NaN	(all kmers)
293s Depth median:                 	0	(all kmers)
293s Depth standard deviation:     	0.00	(all kmers)
293s 
293s Approx. read depth median:    	NaN
293s 
293s Removing temp files.
293s 
293s Total time:      		0.981 seconds.   	0.19 kb/sec
293s 	test -r out3.fastq
293s 	test -r outt.fastq
293s 	test -r hist.plt
293s 	bbnorm.sh in=illumina_full_range_original_illumina.fastq qin=64 \
293s 		out=out4.fastq outt=outt2.fastq hist=hist2.plt
293s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
293s java -ea -Xmx2200m -Xms2200m -cp /usr/share/java/bbmap.jar jgi.KmerNormalize bits=32 in=illumina_full_range_original_illumina.fastq qin=64 out=out4.fastq outt=outt2.fastq hist=hist2.plt
294s Executing jgi.KmerNormalize [bits=32, in=illumina_full_range_original_illumina.fastq, qin=64, out=out4.fastq, outt=outt2.fastq, hist=hist2.plt]
294s 
294s 
294s    ***********   Pass 1   **********   
294s 
294s 
294s Settings:
294s threads:          	8
294s k:                	31
294s deterministic:    	true
294s toss error reads: 	false
294s passes:           	1
294s bits per cell:    	16
294s cells:            	806.44M
294s hashes:           	3
294s base min quality: 	5
294s kmer min prob:    	0.5
294s 
294s target depth:     	400
294s min depth:        	3
294s max depth:        	500
294s min good kmers:   	15
294s depth percentile: 	64.8
294s ignore dupe kmers:	true
294s fix spikes:       	false
294s histogram length: 	65536
294s print zero cov:   	false
294s 
294s Made hash table:  	hashes = 3   	 mem = 1.50 GB   	cells = 806.41M   	used = 0.000%
294s 
294s Estimated unique kmers:     	7
294s 
294s Table creation time:		0.593 seconds.
294s Started output threads.
294s Started output threads.
294s Table read time: 		0.014 seconds.   	8.75 kb/sec
294s Total reads in:  		2        	0.000% Kept
294s Total bases in:  		126        	0.000% Kept
294s Error reads in:  		2        	100.000%
294s Error type 1:    		2        	100.000%
294s Error type 2:    		0        	0.000%
294s Error type 3:    		0        	0.000%
294s 
294s Wrote histogram to hist2.plt
294s Total kmers counted:          	66
294s Total unique kmer count:      	66
294s Includes forward kmers only.
294s The unique kmer estimate can be more accurate than the unique count, if the tables are very full.
294s The most accurate value is the greater of the two.
294s 
294s Percent unique:               	100.00%
294s Depth average:                	1.00	(unique kmers)
294s Depth median:                 	1	(unique kmers)
294s Depth standard deviation:     	0.00	(unique kmers)
294s Corrected depth average:      	0.00	
294s 
294s Depth average:                	1.00	(all kmers)
294s Depth median:                 	1	(all kmers)
294s Depth standard deviation:     	0.00	(all kmers)
294s 
294s Approx. read depth median:    	1.91
294s 
294s    ***********   Pass 2   **********   
294s 
294s 
294s Settings:
294s threads:          	8
294s k:                	31
294s deterministic:    	true
294s toss error reads: 	false
294s passes:           	1
294s bits per cell:    	16
294s cells:            	806.44M
294s hashes:           	3
294s base min quality: 	5
294s kmer min prob:    	0.5
294s 
294s target depth:     	100
294s min depth:        	5
294s max depth:        	100
294s min good kmers:   	15
294s depth percentile: 	54.0
294s ignore dupe kmers:	true
294s fix spikes:       	false
294s histogram length: 	65536
294s 
295s Made hash table:  	hashes = 3   	 mem = 1.50 GB   	cells = 806.41M   	used = 0.000%
295s 
295s Estimated unique kmers:     	0
295s 
295s Table creation time:		0.311 seconds.
295s Started output threads.
295s Started output threads.
295s Table read time: 		0.003 seconds.   	0.00 kb/sec
295s Total reads in:  		0        	NaN% Kept
295s Total bases in:  		0        	NaN% Kept
295s Error reads in:  		0        	NaN%
295s Error type 1:    		0        	NaN%
295s Error type 2:    		0        	NaN%
295s Error type 3:    		0        	NaN%
295s Total kmers counted:          	0
295s Total unique kmer count:      	0
295s Includes forward kmers only.
295s The unique kmer estimate can be more accurate than the unique count, if the tables are very full.
295s The most accurate value is the greater of the two.
295s 
295s Percent unique:               	NaN%
295s Depth average:                	NaN	(unique kmers)
295s Depth median:                 	0	(unique kmers)
295s Depth standard deviation:     	NaN	(unique kmers)
295s Corrected depth average:      	NaN	
295s 
295s Depth average:                	NaN	(all kmers)
295s Depth median:                 	0	(all kmers)
295s Depth standard deviation:     	0.00	(all kmers)
295s 
295s Approx. read depth median:    	NaN
295s 
295s Removing temp files.
295s 
295s Total time:      		1.009 seconds.   	0.12 kb/sec
295s 	test -r out4.fastq
295s 	test -r outt2.fastq
295s 	test -r hist2.plt
295s autopkgtest [11:07:05]: test run-unit-test: -----------------------]
299s autopkgtest [11:07:09]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
299s run-unit-test        PASS
302s autopkgtest [11:07:12]: @@@@@@@@@@@@@@@@@@@@ summary
302s run-unit-test        PASS