0s autopkgtest [00:45:20]: starting date and time: 2024-04-19 00:45:20+0000
  0s autopkgtest [00:45:20]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline
  0s autopkgtest [00:45:20]: host juju-7f2275-prod-proposed-migration-environment-4; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lpv8h23_/out --timeout-copy=6000 --setup-commands 'dhclient || true; ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:gsl --apt-upgrade art-nextgen-simulation-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- lxd -r lxd-armhf-10.145.243.170 lxd-armhf-10.145.243.170:autopkgtest/ubuntu/noble/armhf
 57s autopkgtest [00:46:17]: testbed dpkg architecture: armhf
 59s autopkgtest [00:46:19]: testbed apt version: 2.7.14build2
 59s autopkgtest [00:46:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 68s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 69s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [54.2 kB]
 69s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [376 kB]
 70s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B]
 70s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB]
 70s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [82.2 kB]
 70s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf c-n-f Metadata [2492 B]
 70s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf Packages [976 B]
 70s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted armhf c-n-f Metadata [116 B]
 70s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [459 kB]
 70s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf c-n-f Metadata [7776 B]
 70s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse armhf c-n-f Metadata [116 B]
 73s Fetched 1114 kB in 2s (456 kB/s)
 73s Reading package lists...
 89s sh: 1: dhclient: not found
 91s tee: /proc/self/fd/2: Permission denied
118s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
118s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
118s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
118s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
123s Reading package lists...
125s Reading package lists...
126s Building dependency tree...
126s Reading state information...
127s Calculating upgrade...
128s The following packages will be upgraded:
128s   apport apport-core-dump-handler apport-symptoms base-passwd bcache-tools
128s   bind9-dnsutils bind9-host bind9-libs bzip2 cloud-init cpio cryptsetup-bin
128s   dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common
128s   dbus-user-session diffutils dmidecode dracut-install e2fsprogs
128s   e2fsprogs-l10n eatmydata ethtool findutils ftp gcc-13-base gcc-14-base
128s   gettext-base grep gzip hdparm hostname htop iptables iputils-ping
128s   iputils-tracepath kmod libacl1 libargon2-1 libassuan0 libatasmart4 libattr1
128s   libbytesize-common libbytesize1 libbz2-1.0 libcap2 libcap2-bin libcom-err2
128s   libcrypt1 libcryptsetup12 libdb5.3t64 libdbus-1-3 libdrm-common libdrm2
128s   libeatmydata1 libedit2 libestr0 libevdev2 libext2fs2t64 libfastjson4 libffi8
128s   libfido2-1 libflashrom1 libfribidi0 libgcc-s1 libgcrypt20 libgmp10
128s   libgpg-error-l10n libgpg-error0 libicu74 libidn2-0 libinih1 libip4tc2
128s   libip6tc2 libjson-c5 libkeyutils1 libkmod2 liblmdb0 liblz4-1 liblzo2-2
128s   libmaxminddb0 libmd0 libmnl0 libmpfr6 libncurses6 libncursesw6
128s   libnetfilter-conntrack3 libnfnetlink0 libnftables1 libnftnl11 libnghttp2-14
128s   libnl-3-200 libnl-genl-3-200 libnl-route-3-200 libnspr4 libnss3 libnuma1
128s   libonig5 libp11-kit0 libpam-cap libpam-modules libpam-modules-bin
128s   libpam-runtime libpam0g libpci3 libpcre2-8-0 libpopt0 libpython3-stdlib
128s   libpython3.12-minimal libpython3.12-stdlib libsepol2 libsgutils2-1.46-2
128s   libsigsegv2 libss2 libstdc++6 libtasn1-6 libtinfo6 libuchardet0
128s   libunistring5 libutempter0 libx11-6 libx11-data libxau6 libxdmcp6 libxext6
128s   libxkbcommon0 libxmlb2 libxtables12 libxxhash0 libyaml-0-2 libzstd1 login
128s   logrotate logsave make man-db mawk nano ncurses-base ncurses-bin
128s   ncurses-term netcat-openbsd nftables numactl openssh-client openssh-server
128s   openssh-sftp-server passwd patch pci.ids pciutils python-apt-common python3
128s   python3-apport python3-apt python3-cffi-backend python3-gdbm python3-minimal
128s   python3-netifaces python3-problem-report python3-systemd python3.12
128s   python3.12-minimal rsync rsyslog screen sed sg3-utils sg3-utils-udev sudo
128s   sysstat sysvinit-utils tar tcpdump time tnftp tzdata ufw usb.ids usbutils
128s   xauth xdg-user-dirs xkb-data zstd
129s 186 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
129s Need to get 43.7 MB of archives.
129s After this operation, 585 kB disk space will be freed.
129s Get:1 http://ftpmaster.internal/ubuntu noble/main armhf diffutils armhf 1:3.10-1build1 [167 kB]
129s Get:2 http://ftpmaster.internal/ubuntu noble/main armhf findutils armhf 4.9.0-5build1 [293 kB]
130s Get:3 http://ftpmaster.internal/ubuntu noble/main armhf grep armhf 3.11-4build1 [157 kB]
130s Get:4 http://ftpmaster.internal/ubuntu noble/main armhf gzip armhf 1.12-1ubuntu3 [95.8 kB]
130s Get:5 http://ftpmaster.internal/ubuntu noble/main armhf hostname armhf 3.23+nmu2ubuntu2 [10.4 kB]
130s Get:6 http://ftpmaster.internal/ubuntu noble/main armhf login armhf 1:4.13+dfsg1-4ubuntu3 [200 kB]
130s Get:7 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-bin armhf 6.4+20240113-1ubuntu2 [178 kB]
130s Get:8 http://ftpmaster.internal/ubuntu noble/main armhf sed armhf 4.9-2build1 [190 kB]
130s Get:9 http://ftpmaster.internal/ubuntu noble/main armhf tar armhf 1.35+dfsg-3build1 [236 kB]
131s Get:10 http://ftpmaster.internal/ubuntu noble/main armhf base-passwd armhf 3.6.3build1 [50.9 kB]
131s Get:11 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
131s Get:12 http://ftpmaster.internal/ubuntu noble/main armhf ncurses-term all 6.4+20240113-1ubuntu2 [275 kB]
131s Get:13 http://ftpmaster.internal/ubuntu noble/main armhf sysvinit-utils armhf 3.08-6ubuntu3 [33.8 kB]
131s Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libcrypt1 armhf 1:4.4.36-4build1 [92.6 kB]
131s Get:15 http://ftpmaster.internal/ubuntu noble/main armhf libpam0g armhf 1.5.3-5ubuntu5 [62.1 kB]
131s Get:16 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules-bin armhf 1.5.3-5ubuntu5 [47.0 kB]
131s Get:17 http://ftpmaster.internal/ubuntu noble/main armhf libpam-modules armhf 1.5.3-5ubuntu5 [260 kB]
132s Get:18 http://ftpmaster.internal/ubuntu noble/main armhf e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu4 [5998 B]
132s Get:19 http://ftpmaster.internal/ubuntu noble/main armhf logsave armhf 1.47.0-2.4~exp1ubuntu4 [22.0 kB]
132s Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libext2fs2t64 armhf 1.47.0-2.4~exp1ubuntu4 [202 kB]
132s Get:21 http://ftpmaster.internal/ubuntu noble/main armhf e2fsprogs armhf 1.47.0-2.4~exp1ubuntu4 [571 kB]
133s Get:22 http://ftpmaster.internal/ubuntu noble/main armhf tzdata all 2024a-2ubuntu1 [273 kB]
134s Get:23 http://ftpmaster.internal/ubuntu noble/main armhf python3.12 armhf 3.12.3-1 [651 kB]
135s Get:24 http://ftpmaster.internal/ubuntu noble/main armhf bzip2 armhf 1.0.8-5.1 [33.5 kB]
135s Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-1.0 armhf 1.0.8-5.1 [31.1 kB]
135s Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-7 [662 kB]
137s Get:27 http://ftpmaster.internal/ubuntu noble/main armhf gcc-14-base armhf 14-20240412-0ubuntu1 [47.6 kB]
137s Get:28 http://ftpmaster.internal/ubuntu noble/main armhf libgcc-s1 armhf 14-20240412-0ubuntu1 [41.5 kB]
137s Get:29 http://ftpmaster.internal/ubuntu noble/main armhf libstdc++6 armhf 14-20240412-0ubuntu1 [714 kB]
139s Get:30 http://ftpmaster.internal/ubuntu noble/main armhf libffi8 armhf 3.4.6-1build1 [21.2 kB]
139s Get:31 http://ftpmaster.internal/ubuntu noble/main armhf libncurses6 armhf 6.4+20240113-1ubuntu2 [88.1 kB]
139s Get:32 http://ftpmaster.internal/ubuntu noble/main armhf libncursesw6 armhf 6.4+20240113-1ubuntu2 [119 kB]
140s Get:33 http://ftpmaster.internal/ubuntu noble/main armhf libtinfo6 armhf 6.4+20240113-1ubuntu2 [90.8 kB]
140s Get:34 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12-stdlib armhf 3.12.3-1 [1925 kB]
143s Get:35 http://ftpmaster.internal/ubuntu noble/main armhf python3.12-minimal armhf 3.12.3-1 [2023 kB]
145s Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libpython3.12-minimal armhf 3.12.3-1 [817 kB]
145s Get:37 http://ftpmaster.internal/ubuntu noble/main armhf python3-minimal armhf 3.12.3-0ubuntu1 [27.2 kB]
145s Get:38 http://ftpmaster.internal/ubuntu noble/main armhf python3 armhf 3.12.3-0ubuntu1 [24.1 kB]
145s Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libpython3-stdlib armhf 3.12.3-0ubuntu1 [9896 B]
145s Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libacl1 armhf 2.3.2-1build1 [15.1 kB]
145s Get:41 http://ftpmaster.internal/ubuntu noble/main armhf liblz4-1 armhf 1.9.4-1build1 [58.0 kB]
145s Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libpopt0 armhf 1.19+dfsg-1build1 [25.0 kB]
145s Get:43 http://ftpmaster.internal/ubuntu noble/main armhf libxxhash0 armhf 0.8.2-2build1 [31.5 kB]
145s Get:44 http://ftpmaster.internal/ubuntu noble/main armhf libzstd1 armhf 1.5.5+dfsg2-2build1 [265 kB]
145s Get:45 http://ftpmaster.internal/ubuntu noble/main armhf rsync armhf 3.2.7-1ubuntu1 [413 kB]
145s Get:46 http://ftpmaster.internal/ubuntu noble/main armhf python-apt-common all 2.7.7ubuntu1 [20.1 kB]
145s Get:47 http://ftpmaster.internal/ubuntu noble/main armhf python3-apt armhf 2.7.7ubuntu1 [162 kB]
146s Get:48 http://ftpmaster.internal/ubuntu noble/main armhf python3-problem-report all 2.28.1-0ubuntu1 [23.8 kB]
146s Get:49 http://ftpmaster.internal/ubuntu noble/main armhf python3-apport all 2.28.1-0ubuntu1 [92.1 kB]
146s Get:50 http://ftpmaster.internal/ubuntu noble/main armhf apport-core-dump-handler all 2.28.1-0ubuntu1 [16.8 kB]
146s Get:51 http://ftpmaster.internal/ubuntu noble/main armhf apport all 2.28.1-0ubuntu1 [83.5 kB]
146s Get:52 http://ftpmaster.internal/ubuntu noble/main armhf passwd armhf 1:4.13+dfsg1-4ubuntu3 [817 kB]
146s Get:53 http://ftpmaster.internal/ubuntu noble/main armhf libedit2 armhf 3.1-20230828-1build1 [78.7 kB]
146s Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libfido2-1 armhf 1.14.0-1build3 [75.8 kB]
146s Get:55 http://ftpmaster.internal/ubuntu noble/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu13 [35.5 kB]
146s Get:56 http://ftpmaster.internal/ubuntu noble/main armhf openssh-server armhf 1:9.6p1-3ubuntu13 [504 kB]
147s Get:57 http://ftpmaster.internal/ubuntu noble/main armhf openssh-client armhf 1:9.6p1-3ubuntu13 [890 kB]
149s Get:58 http://ftpmaster.internal/ubuntu noble/main armhf libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB]
149s Get:59 http://ftpmaster.internal/ubuntu noble/main armhf libcom-err2 armhf 1.47.0-2.4~exp1ubuntu4 [21.9 kB]
149s Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libattr1 armhf 1:2.5.2-1build1 [10.2 kB]
149s Get:61 http://ftpmaster.internal/ubuntu noble/main armhf libcap2 armhf 1:2.66-5ubuntu2 [25.8 kB]
149s Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error-l10n all 1.47-3build2 [8064 B]
149s Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libgpg-error0 armhf 1.47-3build2 [61.6 kB]
149s Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libgcrypt20 armhf 1.10.3-2build1 [454 kB]
150s Get:65 http://ftpmaster.internal/ubuntu noble/main armhf libgmp10 armhf 2:6.3.0+dfsg-2ubuntu6 [207 kB]
150s Get:66 http://ftpmaster.internal/ubuntu noble/main armhf libmd0 armhf 1.1.0-2build1 [23.0 kB]
150s Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-8-0 armhf 10.42-4ubuntu2 [198 kB]
151s Get:68 http://ftpmaster.internal/ubuntu noble/main armhf libsepol2 armhf 3.5-2build1 [263 kB]
151s Get:69 http://ftpmaster.internal/ubuntu noble/main armhf libunistring5 armhf 1.1-2build1 [513 kB]
152s Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libidn2-0 armhf 2.3.7-2build1 [96.2 kB]
152s Get:71 http://ftpmaster.internal/ubuntu noble/main armhf libp11-kit0 armhf 0.25.3-4ubuntu2 [258 kB]
153s Get:72 http://ftpmaster.internal/ubuntu noble/main armhf libtasn1-6 armhf 4.19.0-3build1 [37.2 kB]
153s Get:73 http://ftpmaster.internal/ubuntu noble/main armhf libassuan0 armhf 2.5.6-1build1 [31.3 kB]
153s Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libss2 armhf 1.47.0-2.4~exp1ubuntu4 [14.7 kB]
153s Get:75 http://ftpmaster.internal/ubuntu noble/main armhf mawk armhf 1.3.4.20240123-1build1 [115 kB]
153s Get:76 http://ftpmaster.internal/ubuntu noble/main armhf dbus-system-bus-common all 1.14.10-4ubuntu4 [81.6 kB]
153s Get:77 http://ftpmaster.internal/ubuntu noble/main armhf dbus-session-bus-common all 1.14.10-4ubuntu4 [80.4 kB]
153s Get:78 http://ftpmaster.internal/ubuntu noble/main armhf dbus-user-session armhf 1.14.10-4ubuntu4 [9960 B]
153s Get:79 http://ftpmaster.internal/ubuntu noble/main armhf dbus-daemon armhf 1.14.10-4ubuntu4 [109 kB]
153s Get:80 http://ftpmaster.internal/ubuntu noble/main armhf dbus-bin armhf 1.14.10-4ubuntu4 [37.1 kB]
154s Get:81 http://ftpmaster.internal/ubuntu noble/main armhf dbus armhf 1.14.10-4ubuntu4 [28.1 kB]
154s Get:82 http://ftpmaster.internal/ubuntu noble/main armhf libdbus-1-3 armhf 1.14.10-4ubuntu4 [190 kB]
154s Get:83 http://ftpmaster.internal/ubuntu noble/main armhf libpam-cap armhf 1:2.66-5ubuntu2 [11.6 kB]
154s Get:84 http://ftpmaster.internal/ubuntu noble/main armhf libcap2-bin armhf 1:2.66-5ubuntu2 [32.3 kB]
154s Get:85 http://ftpmaster.internal/ubuntu noble/main armhf iputils-ping armhf 3:20240117-1build1 [43.1 kB]
154s Get:86 http://ftpmaster.internal/ubuntu noble/main armhf kmod armhf 31+20240202-2ubuntu6 [91.8 kB]
154s Get:87 http://ftpmaster.internal/ubuntu noble/main armhf libkmod2 armhf 31+20240202-2ubuntu6 [45.0 kB]
154s Get:88 http://ftpmaster.internal/ubuntu noble/main armhf libargon2-1 armhf 0~20190702+dfsg-4build1 [22.6 kB]
154s Get:89 http://ftpmaster.internal/ubuntu noble/main armhf libjson-c5 armhf 0.17-1build1 [31.3 kB]
154s Get:90 http://ftpmaster.internal/ubuntu noble/main armhf libcryptsetup12 armhf 2:2.7.0-1ubuntu4 [238 kB]
154s Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libestr0 armhf 0.1.11-1build1 [6770 B]
154s Get:92 http://ftpmaster.internal/ubuntu noble/main armhf libfastjson4 armhf 1.2304.0-1build1 [20.1 kB]
154s Get:93 http://ftpmaster.internal/ubuntu noble/main armhf libfribidi0 armhf 1.0.13-3build1 [23.9 kB]
155s Get:94 http://ftpmaster.internal/ubuntu noble/main armhf libicu74 armhf 74.2-1ubuntu3 [10.5 MB]
170s Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libkeyutils1 armhf 1.6.3-3build1 [8236 B]
170s Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libmnl0 armhf 1.0.5-2build1 [10.5 kB]
170s Get:97 http://ftpmaster.internal/ubuntu noble/main armhf iptables armhf 1.8.10-3ubuntu2 [338 kB]
170s Get:98 http://ftpmaster.internal/ubuntu noble/main armhf libip4tc2 armhf 1.8.10-3ubuntu2 [21.3 kB]
170s Get:99 http://ftpmaster.internal/ubuntu noble/main armhf libip6tc2 armhf 1.8.10-3ubuntu2 [21.7 kB]
170s Get:100 http://ftpmaster.internal/ubuntu noble/main armhf libnfnetlink0 armhf 1.0.2-2build1 [12.9 kB]
170s Get:101 http://ftpmaster.internal/ubuntu noble/main armhf libnetfilter-conntrack3 armhf 1.0.9-6build1 [37.5 kB]
171s Get:102 http://ftpmaster.internal/ubuntu noble/main armhf libnftnl11 armhf 1.2.6-2build1 [52.5 kB]
171s Get:103 http://ftpmaster.internal/ubuntu noble/main armhf libxtables12 armhf 1.8.10-3ubuntu2 [32.4 kB]
171s Get:104 http://ftpmaster.internal/ubuntu noble/main armhf libyaml-0-2 armhf 0.2.5-1build1 [45.2 kB]
171s Get:105 http://ftpmaster.internal/ubuntu noble/main armhf logrotate armhf 3.21.0-2build1 [50.3 kB]
171s Get:106 http://ftpmaster.internal/ubuntu noble/main armhf netcat-openbsd armhf 1.226-1ubuntu2 [42.8 kB]
171s Get:107 http://ftpmaster.internal/ubuntu noble/main armhf python3-cffi-backend armhf 1.16.0-2build1 [68.0 kB]
171s Get:108 http://ftpmaster.internal/ubuntu noble/main armhf python3-netifaces armhf 0.11.0-2build3 [17.2 kB]
171s Get:109 http://ftpmaster.internal/ubuntu noble/main armhf rsyslog armhf 8.2312.0-3ubuntu9 [460 kB]
172s Get:110 http://ftpmaster.internal/ubuntu noble/main armhf sudo armhf 1.9.15p5-3ubuntu5 [936 kB]
173s Get:111 http://ftpmaster.internal/ubuntu noble/main armhf xdg-user-dirs armhf 0.18-1build1 [17.3 kB]
173s Get:112 http://ftpmaster.internal/ubuntu noble/main armhf xkb-data all 2.41-2ubuntu1 [395 kB]
173s Get:113 http://ftpmaster.internal/ubuntu noble/main armhf liblmdb0 armhf 0.9.31-1build1 [39.9 kB]
173s Get:114 http://ftpmaster.internal/ubuntu noble/main armhf libmaxminddb0 armhf 1.9.1-1build1 [23.2 kB]
173s Get:115 http://ftpmaster.internal/ubuntu noble/main armhf libnghttp2-14 armhf 1.59.0-1build4 [68.2 kB]
173s Get:116 http://ftpmaster.internal/ubuntu noble/main armhf bind9-dnsutils armhf 1:9.18.24-0ubuntu5 [149 kB]
173s Get:117 http://ftpmaster.internal/ubuntu noble/main armhf bind9-host armhf 1:9.18.24-0ubuntu5 [47.4 kB]
173s Get:118 http://ftpmaster.internal/ubuntu noble/main armhf bind9-libs armhf 1:9.18.24-0ubuntu5 [1148 kB]
174s Get:119 http://ftpmaster.internal/ubuntu noble/main armhf cpio armhf 2.15+dfsg-1ubuntu2 [81.8 kB]
174s Get:120 http://ftpmaster.internal/ubuntu noble/main armhf dmidecode armhf 3.5-3build1 [58.6 kB]
174s Get:121 http://ftpmaster.internal/ubuntu noble/main armhf tnftp armhf 20230507-2build3 [98.7 kB]
174s Get:122 http://ftpmaster.internal/ubuntu noble/main armhf ftp all 20230507-2build3 [4728 B]
174s Get:123 http://ftpmaster.internal/ubuntu noble/main armhf gettext-base armhf 0.21-14ubuntu2 [38.1 kB]
174s Get:124 http://ftpmaster.internal/ubuntu noble/main armhf hdparm armhf 9.65+ds-1build1 [96.7 kB]
174s Get:125 http://ftpmaster.internal/ubuntu noble/main armhf iputils-tracepath armhf 3:20240117-1build1 [12.8 kB]
174s Get:126 http://ftpmaster.internal/ubuntu noble/main armhf libdrm-common all 2.4.120-2build1 [8096 B]
174s Get:127 http://ftpmaster.internal/ubuntu noble/main armhf libdrm2 armhf 2.4.120-2build1 [36.6 kB]
174s Get:128 http://ftpmaster.internal/ubuntu noble/main armhf nftables armhf 1.0.9-1build1 [69.5 kB]
174s Get:129 http://ftpmaster.internal/ubuntu noble/main armhf libnftables1 armhf 1.0.9-1build1 [309 kB]
174s Get:130 http://ftpmaster.internal/ubuntu noble/main armhf libnuma1 armhf 2.0.18-1build1 [19.8 kB]
174s Get:131 http://ftpmaster.internal/ubuntu noble/main armhf pci.ids all 0.0~2024.03.31-1 [275 kB]
174s Get:132 http://ftpmaster.internal/ubuntu noble/main armhf pciutils armhf 1:3.10.0-2build1 [64.4 kB]
174s Get:133 http://ftpmaster.internal/ubuntu noble/main armhf libpci3 armhf 1:3.10.0-2build1 [29.5 kB]
174s Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libuchardet0 armhf 0.0.8-1build1 [73.9 kB]
174s Get:135 http://ftpmaster.internal/ubuntu noble/main armhf libx11-data all 2:1.8.7-1build1 [115 kB]
174s Get:136 http://ftpmaster.internal/ubuntu noble/main armhf libx11-6 armhf 2:1.8.7-1build1 [583 kB]
174s Get:137 http://ftpmaster.internal/ubuntu noble/main armhf libxau6 armhf 1:1.0.9-1build6 [6312 B]
174s Get:138 http://ftpmaster.internal/ubuntu noble/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu6 [8738 B]
174s Get:139 http://ftpmaster.internal/ubuntu noble/main armhf libxext6 armhf 2:1.3.4-1build2 [25.3 kB]
174s Get:140 http://ftpmaster.internal/ubuntu noble/main armhf man-db armhf 2.12.0-4build2 [1202 kB]
174s Get:141 http://ftpmaster.internal/ubuntu noble/main armhf nano armhf 7.2-2build1 [269 kB]
175s Get:142 http://ftpmaster.internal/ubuntu noble/main armhf python3-gdbm armhf 3.12.3-0ubuntu1 [15.2 kB]
175s Get:143 http://ftpmaster.internal/ubuntu noble/main armhf tcpdump armhf 4.99.4-3ubuntu4 [425 kB]
175s Get:144 http://ftpmaster.internal/ubuntu noble/main armhf time armhf 1.9-0.2build1 [45.8 kB]
175s Get:145 http://ftpmaster.internal/ubuntu noble/main armhf ufw all 0.36.2-6 [169 kB]
175s Get:146 http://ftpmaster.internal/ubuntu noble/main armhf usb.ids all 2024.03.18-1 [223 kB]
175s Get:147 http://ftpmaster.internal/ubuntu noble/main armhf usbutils armhf 1:017-3build1 [75.6 kB]
175s Get:148 http://ftpmaster.internal/ubuntu noble/main armhf xauth armhf 1:1.1.2-1build1 [22.7 kB]
175s Get:149 http://ftpmaster.internal/ubuntu noble/main armhf apport-symptoms all 0.25 [13.1 kB]
175s Get:150 http://ftpmaster.internal/ubuntu noble/main armhf bcache-tools armhf 1.0.8-5build1 [20.2 kB]
175s Get:151 http://ftpmaster.internal/ubuntu noble/main armhf cryptsetup-bin armhf 2:2.7.0-1ubuntu4 [214 kB]
175s Get:152 http://ftpmaster.internal/ubuntu noble/main armhf dracut-install armhf 060+5-1ubuntu3 [34.1 kB]
175s Get:153 http://ftpmaster.internal/ubuntu noble/main armhf libeatmydata1 armhf 131-1ubuntu1 [7188 B]
175s Get:154 http://ftpmaster.internal/ubuntu noble/main armhf eatmydata all 131-1ubuntu1 [5584 B]
175s Get:155 http://ftpmaster.internal/ubuntu noble/main armhf ethtool armhf 1:6.7-1build1 [218 kB]
175s Get:156 http://ftpmaster.internal/ubuntu noble/main armhf gcc-13-base armhf 13.2.0-23ubuntu4 [48.9 kB]
175s Get:157 http://ftpmaster.internal/ubuntu noble/main armhf libnl-genl-3-200 armhf 3.7.0-0.3build1 [10.3 kB]
175s Get:158 http://ftpmaster.internal/ubuntu noble/main armhf libnl-route-3-200 armhf 3.7.0-0.3build1 [162 kB]
175s Get:159 http://ftpmaster.internal/ubuntu noble/main armhf libnl-3-200 armhf 3.7.0-0.3build1 [49.0 kB]
175s Get:160 http://ftpmaster.internal/ubuntu noble/main armhf htop armhf 3.3.0-4build1 [139 kB]
175s Get:161 http://ftpmaster.internal/ubuntu noble/main armhf libatasmart4 armhf 0.19-5build3 [24.0 kB]
175s Get:162 http://ftpmaster.internal/ubuntu noble/main armhf libmpfr6 armhf 4.2.1-1build1 [229 kB]
175s Get:163 http://ftpmaster.internal/ubuntu noble/main armhf libbytesize1 armhf 2.10-1ubuntu2 [11.7 kB]
175s Get:164 http://ftpmaster.internal/ubuntu noble/main armhf libbytesize-common all 2.10-1ubuntu2 [3396 B]
175s Get:165 http://ftpmaster.internal/ubuntu noble/main armhf libflashrom1 armhf 1.3.0-2.1ubuntu2 [138 kB]
175s Get:166 http://ftpmaster.internal/ubuntu noble/main armhf libinih1 armhf 55-1ubuntu2 [6506 B]
175s Get:167 http://ftpmaster.internal/ubuntu noble/main armhf liblzo2-2 armhf 2.10-2build4 [46.1 kB]
175s Get:168 http://ftpmaster.internal/ubuntu noble/main armhf libnspr4 armhf 2:4.35-1.1build1 [93.0 kB]
175s Get:169 http://ftpmaster.internal/ubuntu noble/main armhf libnss3 armhf 2:3.98-1build1 [1288 kB]
175s Get:170 http://ftpmaster.internal/ubuntu noble/main armhf libonig5 armhf 6.9.9-1build1 [148 kB]
175s Get:171 http://ftpmaster.internal/ubuntu noble/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu4 [82.7 kB]
175s Get:172 http://ftpmaster.internal/ubuntu noble/main armhf libsigsegv2 armhf 2.14-1ubuntu2 [14.2 kB]
175s Get:173 http://ftpmaster.internal/ubuntu noble/main armhf libutempter0 armhf 1.2.1-3build1 [8862 B]
175s Get:174 http://ftpmaster.internal/ubuntu noble/main armhf libxkbcommon0 armhf 1.6.0-1build1 [108 kB]
175s Get:175 http://ftpmaster.internal/ubuntu noble/main armhf libxmlb2 armhf 0.3.18-1 [56.9 kB]
175s Get:176 http://ftpmaster.internal/ubuntu noble/main armhf make armhf 4.3-4.1build2 [162 kB]
175s Get:177 http://ftpmaster.internal/ubuntu noble/main armhf numactl armhf 2.0.18-1build1 [38.2 kB]
175s Get:178 http://ftpmaster.internal/ubuntu noble/main armhf patch armhf 2.7.6-7build3 [110 kB]
175s Get:179 http://ftpmaster.internal/ubuntu noble/main armhf python3-systemd armhf 235-1build4 [39.7 kB]
175s Get:180 http://ftpmaster.internal/ubuntu noble/main armhf screen armhf 4.9.1-1build1 [638 kB]
175s Get:181 http://ftpmaster.internal/ubuntu noble/main armhf sg3-utils armhf 1.46-3ubuntu4 [816 kB]
175s Get:182 http://ftpmaster.internal/ubuntu noble/main armhf sg3-utils-udev all 1.46-3ubuntu4 [5922 B]
175s Get:183 http://ftpmaster.internal/ubuntu noble/main armhf sysstat armhf 12.6.1-2 [479 kB]
176s Get:184 http://ftpmaster.internal/ubuntu noble/main armhf zstd armhf 1.5.5+dfsg2-2build1 [683 kB]
176s Get:185 http://ftpmaster.internal/ubuntu noble/main armhf cloud-init all 24.1.3-0ubuntu3 [598 kB]
176s Get:186 http://ftpmaster.internal/ubuntu noble/main armhf libevdev2 armhf 1.13.1+dfsg-1build1 [29.8 kB]
183s Preconfiguring packages ...
184s Fetched 43.7 MB in 47s (920 kB/s)
184s (Reading database ... 
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184s Preparing to unpack .../diffutils_1%3a3.10-1build1_armhf.deb ...
184s Unpacking diffutils (1:3.10-1build1) over (1:3.10-1) ...
184s Setting up diffutils (1:3.10-1build1) ...
185s (Reading database ... 
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185s Preparing to unpack .../findutils_4.9.0-5build1_armhf.deb ...
185s Unpacking findutils (4.9.0-5build1) over (4.9.0-5) ...
186s Setting up findutils (4.9.0-5build1) ...
186s (Reading database ... 
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186s Preparing to unpack .../grep_3.11-4build1_armhf.deb ...
186s Unpacking grep (3.11-4build1) over (3.11-4) ...
186s Setting up grep (3.11-4build1) ...
186s (Reading database ... 
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186s Preparing to unpack .../gzip_1.12-1ubuntu3_armhf.deb ...
187s Unpacking gzip (1.12-1ubuntu3) over (1.12-1ubuntu2) ...
187s Setting up gzip (1.12-1ubuntu3) ...
188s (Reading database ... 
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188s Preparing to unpack .../hostname_3.23+nmu2ubuntu2_armhf.deb ...
188s Unpacking hostname (3.23+nmu2ubuntu2) over (3.23+nmu2ubuntu1) ...
188s Setting up hostname (3.23+nmu2ubuntu2) ...
188s (Reading database ... 
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188s Preparing to unpack .../login_1%3a4.13+dfsg1-4ubuntu3_armhf.deb ...
188s Unpacking login (1:4.13+dfsg1-4ubuntu3) over (1:4.13+dfsg1-4ubuntu1) ...
188s Setting up login (1:4.13+dfsg1-4ubuntu3) ...
188s (Reading database ... 
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188s Preparing to unpack .../ncurses-bin_6.4+20240113-1ubuntu2_armhf.deb ...
188s Unpacking ncurses-bin (6.4+20240113-1ubuntu2) over (6.4+20240113-1ubuntu1) ...
188s Setting up ncurses-bin (6.4+20240113-1ubuntu2) ...
189s (Reading database ... 
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189s Preparing to unpack .../sed_4.9-2build1_armhf.deb ...
189s Unpacking sed (4.9-2build1) over (4.9-2) ...
189s Setting up sed (4.9-2build1) ...
189s (Reading database ... 
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189s Preparing to unpack .../tar_1.35+dfsg-3build1_armhf.deb ...
189s Unpacking tar (1.35+dfsg-3build1) over (1.35+dfsg-3) ...
189s Setting up tar (1.35+dfsg-3build1) ...
190s (Reading database ... 
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190s Preparing to unpack .../base-passwd_3.6.3build1_armhf.deb ...
190s Unpacking base-passwd (3.6.3build1) over (3.6.3) ...
191s Setting up base-passwd (3.6.3build1) ...
191s (Reading database ... 
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191s Preparing to unpack .../ncurses-base_6.4+20240113-1ubuntu2_all.deb ...
191s Unpacking ncurses-base (6.4+20240113-1ubuntu2) over (6.4+20240113-1ubuntu1) ...
191s Setting up ncurses-base (6.4+20240113-1ubuntu2) ...
191s (Reading database ... 
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191s Preparing to unpack .../ncurses-term_6.4+20240113-1ubuntu2_all.deb ...
191s Unpacking ncurses-term (6.4+20240113-1ubuntu2) over (6.4+20240113-1ubuntu1) ...
192s Preparing to unpack .../sysvinit-utils_3.08-6ubuntu3_armhf.deb ...
192s Unpacking sysvinit-utils (3.08-6ubuntu3) over (3.08-6ubuntu2) ...
192s Setting up sysvinit-utils (3.08-6ubuntu3) ...
193s (Reading database ... 
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193s Preparing to unpack .../libcrypt1_1%3a4.4.36-4build1_armhf.deb ...
193s Unpacking libcrypt1:armhf (1:4.4.36-4build1) over (1:4.4.36-4) ...
193s Setting up libcrypt1:armhf (1:4.4.36-4build1) ...
193s (Reading database ... 
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193s Preparing to unpack .../libpam0g_1.5.3-5ubuntu5_armhf.deb ...
193s Unpacking libpam0g:armhf (1.5.3-5ubuntu5) over (1.5.3-5ubuntu4) ...
193s Setting up libpam0g:armhf (1.5.3-5ubuntu5) ...
193s (Reading database ... 
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193s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu5_armhf.deb ...
193s Unpacking libpam-modules-bin (1.5.3-5ubuntu5) over (1.5.3-5ubuntu4) ...
194s Setting up libpam-modules-bin (1.5.3-5ubuntu5) ...
203s pam_namespace.service is a disabled or a static unit not running, not starting it.
204s (Reading database ... 
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204s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu5_armhf.deb ...
210s Unpacking libpam-modules:armhf (1.5.3-5ubuntu5) over (1.5.3-5ubuntu4) ...
210s Setting up libpam-modules:armhf (1.5.3-5ubuntu5) ...
211s (Reading database ... 
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211s Preparing to unpack .../e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu4_all.deb ...
211s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2.4~exp1ubuntu3) ...
211s Preparing to unpack .../logsave_1.47.0-2.4~exp1ubuntu4_armhf.deb ...
211s Unpacking logsave (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2.4~exp1ubuntu3) ...
212s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu4_armhf.deb ...
212s Leaving 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2 to /lib/arm-linux-gnueabihf/libe2p.so.2.usr-is-merged by libext2fs2t64'
212s Leaving 'diversion of /lib/arm-linux-gnueabihf/libe2p.so.2.3 to /lib/arm-linux-gnueabihf/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
212s Leaving 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2 to /lib/arm-linux-gnueabihf/libext2fs.so.2.usr-is-merged by libext2fs2t64'
212s Leaving 'diversion of /lib/arm-linux-gnueabihf/libext2fs.so.2.4 to /lib/arm-linux-gnueabihf/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
212s Unpacking libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2.4~exp1ubuntu3) ...
212s Setting up libext2fs2t64:armhf (1.47.0-2.4~exp1ubuntu4) ...
212s (Reading database ... 
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212s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu4_armhf.deb ...
212s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2.4~exp1ubuntu3) ...
213s Preparing to unpack .../tzdata_2024a-2ubuntu1_all.deb ...
213s Unpacking tzdata (2024a-2ubuntu1) over (2024a-1ubuntu1) ...
213s Preparing to unpack .../python3.12_3.12.3-1_armhf.deb ...
213s Unpacking python3.12 (3.12.3-1) over (3.12.2-5ubuntu3) ...
213s Preparing to unpack .../bzip2_1.0.8-5.1_armhf.deb ...
213s Unpacking bzip2 (1.0.8-5.1) over (1.0.8-5ubuntu1) ...
214s Preparing to unpack .../libbz2-1.0_1.0.8-5.1_armhf.deb ...
214s Unpacking libbz2-1.0:armhf (1.0.8-5.1) over (1.0.8-5ubuntu1) ...
214s Setting up libbz2-1.0:armhf (1.0.8-5.1) ...
214s (Reading database ... 
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214s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_armhf.deb ...
214s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-7) over (5.3.28+dfsg2-6build1) ...
214s Preparing to unpack .../gcc-14-base_14-20240412-0ubuntu1_armhf.deb ...
214s Unpacking gcc-14-base:armhf (14-20240412-0ubuntu1) over (14-20240330-1ubuntu2) ...
214s Setting up gcc-14-base:armhf (14-20240412-0ubuntu1) ...
214s (Reading database ... 
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230s Preparing to unpack .../libsepol2_3.5-2build1_armhf.deb ...
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230s Preparing to unpack .../libunistring5_1.1-2build1_armhf.deb ...
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230s Preparing to unpack .../libidn2-0_2.3.7-2build1_armhf.deb ...
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230s Preparing to unpack .../libp11-kit0_0.25.3-4ubuntu2_armhf.deb ...
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230s Setting up libp11-kit0:armhf (0.25.3-4ubuntu2) ...
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230s Preparing to unpack .../libtasn1-6_4.19.0-3build1_armhf.deb ...
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230s Setting up libtasn1-6:armhf (4.19.0-3build1) ...
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261s apparmor_parser: Unable to replace "tcpdump".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
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262s info: The user `syslog' is already a member of `adm'.
263s apparmor_parser: Unable to replace "rsyslogd".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
263s 
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281s Updating database of manual pages ...
288s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
288s 
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293s 
293s Current default time zone: 'Etc/UTC'
293s Local time is now:      Fri Apr 19 00:50:13 UTC 2024.
293s Universal Time is now:  Fri Apr 19 00:50:13 UTC 2024.
293s Run 'dpkg-reconfigure tzdata' if you wish to change it.
293s 
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303s logrotate.service is a disabled or a static unit not running, not starting it.
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305s update-initramfs: deferring update (trigger activated)
306s e2scrub_all.service is a disabled or a static unit not running, not starting it.
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306s Setting up sg3-utils-udev (1.46-3ubuntu4) ...
306s update-initramfs: deferring update (trigger activated)
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306s Setting up dbus-user-session (1.14.10-4ubuntu4) ...
306s Setting up libflashrom1:armhf (1.3.0-2.1ubuntu2) ...
306s Setting up dbus (1.14.10-4ubuntu4) ...
306s A reboot is required to replace the running dbus-daemon.
306s Please reboot the system when convenient.
307s Setting up ftp (20230507-2build3) ...
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307s Setting up libdrm2:armhf (2.4.120-2build1) ...
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308s rsync.service is a disabled or a static unit not running, not starting it.
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311s Setting up python3-gdbm:armhf (3.12.3-0ubuntu1) ...
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315s Setting up apport-core-dump-handler (2.28.1-0ubuntu1) ...
315s Setting up apport (2.28.1-0ubuntu1) ...
315s Installing new version of config file /etc/apport/crashdb.conf ...
316s apport-autoreport.service is a disabled or a static unit not running, not starting it.
316s Processing triggers for debianutils (5.17build1) ...
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317s Processing triggers for initramfs-tools (0.142ubuntu24) ...
317s Processing triggers for libc-bin (2.39-0ubuntu8) ...
317s Processing triggers for systemd (255.4-1ubuntu7) ...
318s Reading package lists...
319s Building dependency tree...
319s Reading state information...
320s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
322s autopkgtest [00:50:42]: rebooting testbed after setup commands that affected boot
369s autopkgtest [00:51:29]: testbed running kernel: Linux 5.4.0-176-generic #196-Ubuntu SMP Fri Mar 22 16:46:20 UTC 2024
396s autopkgtest [00:51:56]: @@@@@@@@@@@@@@@@@@@@ apt-source art-nextgen-simulation-tools
412s Get:1 http://ftpmaster.internal/ubuntu noble/universe art-nextgen-simulation-tools 20160605+dfsg-5 (dsc) [2400 B]
412s Get:2 http://ftpmaster.internal/ubuntu noble/universe art-nextgen-simulation-tools 20160605+dfsg-5 (tar) [2229 kB]
412s Get:3 http://ftpmaster.internal/ubuntu noble/universe art-nextgen-simulation-tools 20160605+dfsg-5 (diff) [9420 B]
412s gpgv: Signature made Mon Dec 18 18:32:54 2023 UTC
412s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
412s gpgv:                issuer "tille@debian.org"
412s gpgv: Can't check signature: No public key
412s dpkg-source: warning: cannot verify inline signature for ./art-nextgen-simulation-tools_20160605+dfsg-5.dsc: no acceptable signature found
413s autopkgtest [00:52:13]: testing package art-nextgen-simulation-tools version 20160605+dfsg-5
415s autopkgtest [00:52:15]: build not needed
419s autopkgtest [00:52:19]: test run-unit-test: preparing testbed
430s Reading package lists...
430s Building dependency tree...
430s Reading state information...
431s Starting pkgProblemResolver with broken count: 0
431s Starting 2 pkgProblemResolver with broken count: 0
431s Done
432s The following additional packages will be installed:
432s   art-nextgen-simulation-tools art-nextgen-simulation-tools-profiles libgsl27
432s   libgslcblas0
432s Suggested packages:
432s   gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
432s The following NEW packages will be installed:
432s   art-nextgen-simulation-tools art-nextgen-simulation-tools-profiles
432s   autopkgtest-satdep libgsl27 libgslcblas0
432s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded.
432s Need to get 4668 kB/4669 kB of archives.
432s After this operation, 17.7 MB of additional disk space will be used.
432s Get:1 /tmp/autopkgtest.19hVRz/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B]
432s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libgslcblas0 armhf 2.7.1+dfsg-6ubuntu2 [77.8 kB]
432s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf libgsl27 armhf 2.7.1+dfsg-6ubuntu2 [827 kB]
433s Get:4 http://ftpmaster.internal/ubuntu noble/universe armhf art-nextgen-simulation-tools armhf 20160605+dfsg-5 [1808 kB]
433s Get:5 http://ftpmaster.internal/ubuntu noble/universe armhf art-nextgen-simulation-tools-profiles all 20160605+dfsg-5 [1956 kB]
434s Fetched 4668 kB in 1s (3321 kB/s)
434s Selecting previously unselected package libgslcblas0:armhf.
434s (Reading database ... 
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434s Preparing to unpack .../libgslcblas0_2.7.1+dfsg-6ubuntu2_armhf.deb ...
434s Unpacking libgslcblas0:armhf (2.7.1+dfsg-6ubuntu2) ...
434s Selecting previously unselected package libgsl27:armhf.
434s Preparing to unpack .../libgsl27_2.7.1+dfsg-6ubuntu2_armhf.deb ...
434s Unpacking libgsl27:armhf (2.7.1+dfsg-6ubuntu2) ...
434s Selecting previously unselected package art-nextgen-simulation-tools.
435s Preparing to unpack .../art-nextgen-simulation-tools_20160605+dfsg-5_armhf.deb ...
435s Unpacking art-nextgen-simulation-tools (20160605+dfsg-5) ...
435s Selecting previously unselected package art-nextgen-simulation-tools-profiles.
435s Preparing to unpack .../art-nextgen-simulation-tools-profiles_20160605+dfsg-5_all.deb ...
435s Unpacking art-nextgen-simulation-tools-profiles (20160605+dfsg-5) ...
435s Selecting previously unselected package autopkgtest-satdep.
435s Preparing to unpack .../1-autopkgtest-satdep.deb ...
435s Unpacking autopkgtest-satdep (0) ...
435s Setting up libgslcblas0:armhf (2.7.1+dfsg-6ubuntu2) ...
435s Setting up libgsl27:armhf (2.7.1+dfsg-6ubuntu2) ...
435s Setting up art-nextgen-simulation-tools (20160605+dfsg-5) ...
435s Setting up art-nextgen-simulation-tools-profiles (20160605+dfsg-5) ...
435s Setting up autopkgtest-satdep (0) ...
435s Processing triggers for man-db (2.12.0-4build2) ...
436s Processing triggers for libc-bin (2.39-0ubuntu8) ...
450s (Reading database ... 58581 files and directories currently installed.)
450s Removing autopkgtest-satdep (0) ...
456s autopkgtest [00:52:56]: test run-unit-test: [-----------------------
460s ===================================================================
460s                       ART_454 (Version 2.6.0)                      
460s                    Simulation of 454 Pyrosequencing                
460s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
460s ===================================================================
460s 
460s                           Single-end simulation
460s 
460s Total CPU time used: 0.088448
460s 
460s The random seed for the run:   1713487980
460s 
460s Parameters Settings
460s 	number of flow cycles:            100
460s 	fold of read coverage:            10X
460s 
460s 454 Profile for Simulation
460s 	the built-in GS-FLX profile
460s 
460s Output Files
460s 
460s   FASTQ Sequence File:
460s 	./single_454_flx.fq
460s 
460s   ALN Alignment File:
460s 	./single_454_flx.aln
460s 
460s   SAM Alignment File:
460s 	./single_454_flx.sam
460s 
460s   Read Coverage File:
460s 	./single_454_flx.stat
460s 
461s ===================================================================
461s                       ART_454 (Version 2.6.0)                      
461s                    Simulation of 454 Pyrosequencing                
461s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
461s ===================================================================
461s 
461s                           Paired-end simulation
461s 
461s Total CPU time used: 0.045548
461s 
461s The random seed for the run:   1713487981
461s 
461s Parameters Settings
461s 	number of flow cycles:            100
461s 	fold of read coverage:            5X
461s 	fragment length
461s 		mean:     500
461s 		std:      20
461s 
461s 454 Profile for Simulation
461s 	the built-in GS-FLX profile
461s 
461s Output Files
461s 
461s   FASTQ Sequence Files:
461s 	 the 1st reads: ./paired_454_flx1.fq
461s 	 the 2nd reads: ./paired_454_flx2.fq
461s 
461s   ALN Alignment Files:
461s 	 the 1st reads: ./paired_454_flx1.aln
461s 	 the 2nd reads: ./paired_454_flx2.aln
461s 
461s   SAM Alignment File:
461s 	./paired_454_flx.sam
461s 
461s   Read Coverage File:
461s 	./paired_454_flx.stat
461s 
461s ===================================================================
461s                       ART_454 (Version 2.6.0)                      
461s                    Simulation of 454 Pyrosequencing                
461s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
461s ===================================================================
461s 
461s                           Paired-end simulation
461s 
461s Total CPU time used: 0.049386
461s 
461s The random seed for the run:   1713487981
461s 
461s Parameters Settings
461s 	number of flow cycles:            200
461s 	fold of read coverage:            6X
461s 	fragment length
461s 		mean:     500
461s 		std:      20
461s 
461s 454 Profile for Simulation
461s 	the built-in GS-FLX Titanium profile
461s 
461s Output Files
461s 
461s   FASTQ Sequence Files:
461s 	 the 1st reads: ./paired_454_flxTitan1.fq
461s 	 the 2nd reads: ./paired_454_flxTitan2.fq
461s 
461s   ALN Alignment Files:
461s 	 the 1st reads: ./paired_454_flxTitan1.aln
461s 	 the 2nd reads: ./paired_454_flxTitan2.aln
461s 
461s   SAM Alignment File:
461s 	./paired_454_flxTitan.sam
461s 
461s   Read Coverage File:
461s 	./paired_454_flxTitan.stat
461s 
461s ===================================================================
461s                       ART_454 (Version 2.6.0)                      
461s                    Simulation of 454 Pyrosequencing                
461s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
461s ===================================================================
461s 
471s             Amplicon 5'-end sequencing with single-end reads
471s 
471s Total CPU time used: 10.3905
471s 
471s The random seed for the run:   1713487981
471s 
471s Parameters Settings
471s 	number of flow cycles:            100
471s 	# reads per amplion:              10
471s 
471s 454 Profile for Simulation
471s 	the built-in GS-FLX profile
471s 
471s Output Files
471s 
471s   FASTQ Sequence File:
471s 	./amp_single_454.fq
471s 
471s   ALN Alignment File:
471s 	./amp_single_454.aln
471s 
471s   SAM Alignment File:
471s 	./amp_single_454.sam
471s 
471s   Read Coverage File:
471s 	./amp_single_454.stat
471s 
471s ===================================================================
471s                       ART_454 (Version 2.6.0)                      
471s                    Simulation of 454 Pyrosequencing                
471s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
471s ===================================================================
471s 
480s            Amplicon two-end sequencing with paired-end reads
480s 
480s Total CPU time used: 8.50052
480s 
480s The random seed for the run:   1713487991
480s 
480s Parameters Settings
480s 	number of flow cycles:            100
480s 	# read pairs per amplion:         5
480s 
480s 454 Profile for Simulation
480s 	the built-in GS-FLX profile
480s 
480s Output Files
480s 
480s   FASTQ Sequence Files:
480s 	 the 1st reads: ./amp_paired_454.fq
480s 	 the 2nd reads: ./amp_paired_4542.fq
480s 
480s   ALN Alignment Files:
480s 	 the 1st reads: ./amp_paired_454.aln
480s 	 the 2nd reads: ./amp_paired_4542.aln
480s 
480s   SAM Alignment File:
480s 	./amp_paired_454.sam
480s 
480s   Read Coverage File:
480s 	./amp_paired_454.stat
480s 
480s ===================================================================
480s                       ART_454 (Version 2.6.0)                      
480s                    Simulation of 454 Pyrosequencing                
480s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
480s ===================================================================
480s 
480s                           Single-end simulation
480s 
480s Total CPU time used: 0.057116
480s 
480s The random seed for the run:   777
480s 
480s Parameters Settings
480s 	number of flow cycles:            100
480s 	fold of read coverage:            10X
480s 
480s 454 Profile for Simulation
480s 	the built-in GS-FLX profile
480s 
480s Output Files
480s 
480s   FASTQ Sequence File:
480s 	./single_454_t1.fq
480s 
480s   ALN Alignment File:
480s 	./single_454_t1.aln
480s 
480s   SAM Alignment File:
480s 	./single_454_t1.sam
480s 
480s   Read Coverage File:
480s 	./single_454_t1.stat
480s 
480s ===================================================================
480s                       ART_454 (Version 2.6.0)                      
480s                    Simulation of 454 Pyrosequencing                
480s      Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
480s ===================================================================
480s 
480s                           Single-end simulation
480s 
480s Total CPU time used: 0.057925
480s 
480s The random seed for the run:   777
480s 
480s Parameters Settings
480s 	number of flow cycles:            100
480s 	fold of read coverage:            10X
480s 
480s 454 Profile for Simulation
480s 	the built-in GS-FLX profile
480s 
480s Output Files
480s 
480s   FASTQ Sequence File:
480s 	./single_454_t2.fq
480s 
480s   ALN Alignment File:
480s 	./single_454_t2.aln
480s 
480s   SAM Alignment File:
480s 	./single_454_t2.sam
480s 
480s   Read Coverage File:
480s 	./single_454_t2.stat
480s 
480s compare difference of two simulation datasets after normalising known difference
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
481s                     Single-end simulation
481s 
481s Total CPU time used: 0.189585
481s 
481s The random seed for the run:   1713488001
481s 
481s Parameters Settings
481s 	fold of read coverage:	10X
481s 	read length:	25
481s 
481s SOLiD Error Profile for Simulation
481s 	the built-in 35bp error profile
481s 
481s Output Files
481s 
481s   FASTQ Sequence File:
481s 	./single_dat.fq
481s 
481s   MAP Alignment File:
481s 	./single_dat.map
481s 
481s   SAM Alignment File:
481s 	./single_dat.sam
481s 
481s convert a map file to a UCSC BED file
481s /usr/bin/map2bed.pl single_dat.bed single_dat.map
481s run_test_examples_SOLiD.sh: 12: /usr/bin/map2bed.pl: not found
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
481s can not open error profile file: ../SOLiD_profiles/profile_pseudo
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
481s run_test_examples_SOLiD.sh: 20: /usr/bin/map2bed.pl: not found
481s Warning: you are using the 75bp error profile for testing only.
481s 
481s                     Mate-Pair (F3-R3) simulation
481s 
481s Total CPU time used: 0.139534
481s 
481s The random seed for the run:   1713488001
481s 
481s Parameters Settings
481s 	fold of read coverage:	20X
481s 	F3 read length:	35
481s 	R3 read length:	35
481s 	fragment length
481s 		mean:	2000
481s 		std:	50
481s 
481s SOLiD Error Profile for Simulation
481s 	the built-in 35bp error profile
481s 
481s Output Files
481s 
481s   FASTQ Sequence Files:
481s 	 the 1st reads: ./matepair_dat_R3.fq
481s 	 the 2nd reads: ./matepair_dat_F3.fq
481s 
481s   MAP Alignment Files:
481s 	 the 1st reads: ./matepair_dat_R3.map
481s 	 the 2nd reads: ./matepair_dat_F3.map
481s 
481s   SAM Alignment File:
481s 	./matepair_dat.sam
481s 
481s convert two map files to a UCSC BED file
481s /usr/bin/map2bed.pl maptepair.bed matepair_dat1.map matepair_dat2.map
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
481s                     Mate-Pair (F3-R3) simulation
481s 
481s Total CPU time used: 0.060487
481s 
481s The random seed for the run:   777
481s 
481s Parameters Settings
481s 	fold of read coverage:	10X
481s 	F3 read length:	50
481s 	R3 read length:	50
481s 	fragment length
481s 		mean:	1500
481s 		std:	50
481s 
481s SOLiD Error Profile for Simulation
481s 	the 75bp error profile for testing only
481s 
481s Output Files
481s 
481s   FASTQ Sequence Files:
481s 	 the 1st reads: ./matepair_fs1_R3.fq
481s 	 the 2nd reads: ./matepair_fs1_F3.fq
481s 
481s   MAP Alignment Files:
481s 	 the 1st reads: ./matepair_fs1_R3.map
481s 	 the 2nd reads: ./matepair_fs1_F3.map
481s 
481s   SAM Alignment File:
481s 	./matepair_fs1.sam
481s 
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
481s Warning: you are using the 75bp error profile for testing only.
481s 
481s                     Mate-Pair (F3-R3) simulation
481s 
481s Total CPU time used: 0.059065
481s 
481s The random seed for the run:   777
481s 
481s Parameters Settings
481s 	fold of read coverage:	10X
481s 	F3 read length:	50
481s 	R3 read length:	50
481s 	fragment length
481s 		mean:	1500
481s 		std:	50
481s 
481s SOLiD Error Profile for Simulation
481s 	the 75bp error profile for testing only
481s 
481s Output Files
481s 
481s   FASTQ Sequence Files:
481s 	 the 1st reads: ./matepair_fs2_R3.fq
481s 	 the 2nd reads: ./matepair_fs2_F3.fq
481s 
481s   MAP Alignment Files:
481s 	 the 1st reads: ./matepair_fs2_R3.map
481s 	 the 2nd reads: ./matepair_fs2_F3.map
481s 
481s   SAM Alignment File:
481s 	./matepair_fs2.sam
481s 
481s compare two simulation datasets
481s 4c4
481s < @PG	ID:03	PN:ART_SOLiD	CL:/usr/bin/art_SOLiD -r 777 -s testSeq.fa ./matepair_fs1 50 10 1500 50 
481s ---
481s > @PG	ID:03	PN:ART_SOLiD	CL:/usr/bin/art_SOLiD -r 777 -s testSeq.fa ./matepair_fs2 50 10 1500 50 
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
481s Warning: you are using the 75bp error profile for testing only.
481s 
481s                     Paired-end (F3-F5) simulation
481s 
481s Total CPU time used: 0.198914
481s 
481s The random seed for the run:   1713488001
481s 
481s Parameters Settings
481s 	fold of read coverage:	50X
481s 	F3 read length:	75
481s 	F5 read length:	35
481s 	fragment length
481s 		mean:	250
481s 		std:	10
481s 
481s SOLiD Error Profile for Simulation
481s 	the 75bp error profile for testing only
481s 
481s Output Files
481s 
481s   FASTQ Sequence Files:
481s 	 the 1st reads: ./paired_dat_F5.fq
481s 	 the 2nd reads: ./paired_dat_F3.fq
481s 
481s   MAP Alignment Files:
481s 	 the 1st reads: ./paired_dat_F5.map
481s 	 the 2nd reads: ./paired_dat_F3.map
481s 
481s   SAM Alignment File:
481s 	./paired_dat.sam
481s 
481s =================================================================
481s                     ART_SOLiD (Version 1.3.3)                    
481s          Simulation of Applied Biosystems' SOLiD Sequencing       
481s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
481s =================================================================
481s 
707s           Amplicon single-end sequencing simulation
707s 
707s Total CPU time used: 216.904
707s 
707s The random seed for the run:   1713488001
707s 
707s Parameters Settings
707s 	# reads per amplion:	100
707s 	read length:	25
707s 
707s SOLiD Error Profile for Simulation
707s 	the built-in 35bp error profile
707s 
707s Output Files
707s 
707s   FASTQ Sequence File:
707s 	./amp_single.fq
707s 
707s   MAP Alignment File:
707s 	./amp_single.map
707s 
707s   SAM Alignment File:
707s 	./amp_single.sam
707s 
707s =================================================================
707s                     ART_SOLiD (Version 1.3.3)                    
707s          Simulation of Applied Biosystems' SOLiD Sequencing       
707s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
707s =================================================================
707s 
707s Warning: you are using the 75bp error profile for testing only.
707s 
824s           Amplicon matepair sequencing simulation
824s 
824s Total CPU time used: 115.262
824s 
824s The random seed for the run:   1713488227
824s 
824s Parameters Settings
824s 	# read pairs per amplion:	80
824s 	F3 read length:	50
824s 	R3 read length:	50
824s 
824s SOLiD Error Profile for Simulation
824s 	the 75bp error profile for testing only
824s 
824s Output Files
824s 
824s   FASTQ Sequence Files:
824s 	 the 1st reads: ./amp_matepair_R3.fq
824s 	 the 2nd reads: ./amp_matepair_F3.fq
824s 
824s   MAP Alignment Files:
824s 	 the 1st reads: ./amp_matepair_R3.map
824s 	 the 2nd reads: ./amp_matepair_F3.map
824s 
824s   SAM Alignment File:
824s 	./amp_matepair.sam
824s 
825s =================================================================
825s                     ART_SOLiD (Version 1.3.3)                    
825s          Simulation of Applied Biosystems' SOLiD Sequencing       
825s    Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved.  
825s =================================================================
825s 
909s           Amplicon paired-end sequencing simulation
909s 
909s Total CPU time used: 83.4049
909s 
909s The random seed for the run:   1713488345
909s 
909s Parameters Settings
909s 	# read pairs per amplion:	50
909s 	F3 read length:	35
909s 	F5 read length:	25
909s 
909s SOLiD Error Profile for Simulation
909s 	the built-in 35bp error profile
909s 
909s Output Files
909s 
909s   FASTQ Sequence Files:
909s 	 the 1st reads: ./amp_paired_F5.fq
909s 	 the 2nd reads: ./amp_paired_F3.fq
909s 
909s   MAP Alignment Files:
909s 	 the 1st reads: ./amp_paired_F5.map
909s 	 the 2nd reads: ./amp_paired_F3.map
909s 
909s   SAM Alignment File:
909s 	./amp_paired.sam
909s 
909s 
909s     ====================ART====================
909s              ART_Illumina (2008-2016)          
909s           Q Version 2.5.8 (June 6, 2016)       
909s      Contact: Weichun Huang <whduke@gmail.com> 
909s     -------------------------------------------
909s 
910s                   Single-end Simulation
910s 
910s Total CPU time used: 0.129419
910s 
910s The random seed for the run: 1713488429
910s 
910s Parameters used during run
910s 	Read Length:	35
910s 	Genome masking 'N' cutoff frequency: 	1 in 35
910s 	Fold Coverage:            10X
910s 	Profile Type:             Combined
910s 	ID Tag:                   
910s 
910s Quality Profile(s)
910s 	First Read:   Genome Analyzer I Length 36 R1 (built-in profile) 
910s 
910s Output files
910s 
910s   FASTQ Sequence File:
910s 	./single_end_com.fq
910s 
910s   ALN Alignment File:
910s 	./single_end_com.aln
910s 
910s   SAM Alignment File:
910s 	./single_end_com.sam
910s 
912s 
912s     ====================ART====================
912s              ART_Illumina (2008-2016)          
912s           Q Version 2.5.8 (June 6, 2016)       
912s      Contact: Weichun Huang <whduke@gmail.com> 
912s     -------------------------------------------
912s 
912s                   Single-end Simulation
912s 
912s Total CPU time used: 0.153139
912s 
912s The random seed for the run: 1713488432
912s 
912s Parameters used during run
912s 	Read Length:	50
912s 	Genome masking 'N' cutoff frequency: 	1 in 50
912s 	Fold Coverage:            10X
912s 	Profile Type:             Separated
912s 	ID Tag:                   
912s 
912s Quality Profile(s)
912s 	First Read:   MiniSeq TruSeq Length 51 R1 (built-in profile) 
912s 
912s Output files
912s 
912s   FASTQ Sequence File:
912s 	./single_end_sep.fq
912s 
912s   ALN Alignment File:
912s 	./single_end_sep.aln
912s 
912s   SAM Alignment File:
912s 	./single_end_sep.sam
912s 
912s 
912s     ====================ART====================
912s              ART_Illumina (2008-2016)          
912s           Q Version 2.5.8 (June 6, 2016)       
912s      Contact: Weichun Huang <whduke@gmail.com> 
912s     -------------------------------------------
912s 
912s                   Paired-end sequencing simulation
912s 
912s Total CPU time used: 0.029849
912s 
912s The random seed for the run: 1713488432
912s 
912s Parameters used during run
912s 	Read Length:	150
912s 	Genome masking 'N' cutoff frequency: 	1 in 150
912s 	Fold Coverage:            10X
912s 	Mean Fragment Length:     500
912s 	Standard Deviation:       10
912s 	Profile Type:             Combined
912s 	ID Tag:                   
912s 
912s Quality Profile(s)
912s 	First Read:   HiSeq 2500 Length 150 R1 (built-in profile) 
912s 	First Read:   HiSeq 2500 Length 150 R2 (built-in profile) 
912s 
912s Output files
912s 
912s   FASTQ Sequence Files:
912s 	 the 1st reads: ./paired_end_com1.fq
912s 	 the 2nd reads: ./paired_end_com2.fq
912s 
912s   ALN Alignment Files:
912s 	 the 1st reads: ./paired_end_com1.aln
912s 	 the 2nd reads: ./paired_end_com2.aln
912s 
912s   SAM Alignment File:
912s 	./paired_end_com.sam
912s 
912s 
912s     ====================ART====================
912s              ART_Illumina (2008-2016)          
912s           Q Version 2.5.8 (June 6, 2016)       
912s      Contact: Weichun Huang <whduke@gmail.com> 
912s     -------------------------------------------
912s 
912s                   Paired-end sequencing simulation
912s 
912s Total CPU time used: 0.0473
912s 
912s The random seed for the run: 1713488432
912s 
912s Parameters used during run
912s 	Read Length:	100
912s 	Genome masking 'N' cutoff frequency: 	1 in 100
912s 	Fold Coverage:            10X
912s 	Mean Fragment Length:     500
912s 	Standard Deviation:       10
912s 	Profile Type:             Separated
912s 	ID Tag:                   
912s 
912s Quality Profile(s)
912s 	First Read:   HiSeq 2000 Length 100 R1 (built-in profile) 
912s 	First Read:   HiSeq 2000 Length 100 R2 (built-in profile) 
912s 
912s Output files
912s 
912s   FASTQ Sequence Files:
912s 	 the 1st reads: ./paired_end_sep1.fq
912s 	 the 2nd reads: ./paired_end_sep2.fq
912s 
912s   ALN Alignment Files:
912s 	 the 1st reads: ./paired_end_sep1.aln
912s 	 the 2nd reads: ./paired_end_sep2.aln
912s 
912s   SAM Alignment File:
912s 	./paired_end_sep.sam
912s 
912s 
912s     ====================ART====================
912s              ART_Illumina (2008-2016)          
912s           Q Version 2.5.8 (June 6, 2016)       
912s      Contact: Weichun Huang <whduke@gmail.com> 
912s     -------------------------------------------
912s 
912s                   Matepair-end sequencing simulation
912s 
912s Total CPU time used: 0.036775
912s 
912s The random seed for the run: 1713488432
912s 
912s Parameters used during run
912s 	Read Length:	100
912s 	Genome masking 'N' cutoff frequency: 	1 in 100
912s 	Fold Coverage:            10X
912s 	Mean Fragment Length:     2500
912s 	Standard Deviation:       50
912s 	Profile Type:             Combined
912s 	ID Tag:                   
912s 
912s Quality Profile(s)
912s 	First Read:   HiSeq 2500 Length 126 R1 (built-in profile) 
912s 	First Read:   HiSeq 2500 Length 126 R2 (built-in profile) 
912s 
912s Output files
912s 
912s   FASTQ Sequence Files:
912s 	 the 1st reads: ./matepair_com1.fq
912s 	 the 2nd reads: ./matepair_com2.fq
912s 
912s   ALN Alignment Files:
912s 	 the 1st reads: ./matepair_com1.aln
912s 	 the 2nd reads: ./matepair_com2.aln
912s 
912s   SAM Alignment File:
912s 	./matepair_com.sam
912s 
912s 
912s     ====================ART====================
912s              ART_Illumina (2008-2016)          
912s           Q Version 2.5.8 (June 6, 2016)       
912s      Contact: Weichun Huang <whduke@gmail.com> 
912s     -------------------------------------------
912s 
913s               Amplicon 5'-end sequencing simulation
913s 
913s Total CPU time used: 0.360845
913s 
913s The random seed for the run: 1713488432
913s 
913s Parameters used during run
913s 	Read Length:	100
913s 	Genome masking 'N' cutoff frequency: 	1 in 100
913s 	# Reads per Amplion:       2
913s 	Profile Type:             Combined
913s 	ID Tag:                   
913s 
913s Quality Profile(s)
913s 	First Read:   HiSeqX v2.5 TruSeq Length 151 R1 (built-in profile) 
913s 
913s Output files
913s 
913s   FASTQ Sequence File:
913s 	./amp_5_end_com.fq
913s 
913s   ALN Alignment File:
913s 	./amp_5_end_com.aln
913s 
913s   SAM Alignment File:
913s 	./amp_5_end_com.sam
913s 
913s 
913s     ====================ART====================
913s              ART_Illumina (2008-2016)          
913s           Q Version 2.5.8 (June 6, 2016)       
913s      Contact: Weichun Huang <whduke@gmail.com> 
913s     -------------------------------------------
913s 
913s              Amplicon paired-end sequencing simulation
913s 
913s Total CPU time used: 0.395379
913s 
913s The random seed for the run: 1713488433
913s 
913s Parameters used during run
913s 	Read Length:	100
913s 	Genome masking 'N' cutoff frequency: 	1 in 100
913s 	# Read Pairs per Amplion:  1
913s 	Profile Type:             Combined
913s 	ID Tag:                   
913s 
913s Quality Profile(s)
913s 	First Read:   MiSeq v1 Length 250 R1 (built-in profile) 
913s 	First Read:   MiSeq v1 Length 250 R2 (built-in profile) 
913s 
913s Output files
913s 
913s   FASTQ Sequence Files:
913s 	 the 1st reads: ./amp_pair1.fq
913s 	 the 2nd reads: ./amp_pair2.fq
913s 
913s   ALN Alignment Files:
913s 	 the 1st reads: ./amp_pair1.aln
913s 	 the 2nd reads: ./amp_pair2.aln
913s 
913s   SAM Alignment File:
913s 	./amp_pair.sam
913s 
913s 
913s     ====================ART====================
913s              ART_Illumina (2008-2016)          
913s           Q Version 2.5.8 (June 6, 2016)       
913s      Contact: Weichun Huang <whduke@gmail.com> 
913s     -------------------------------------------
913s 
914s              Amplicon matepair sequencing simulation
914s 
914s Total CPU time used: 0.534362
914s 
914s The random seed for the run: 1713488433
914s 
914s Parameters used during run
914s 	Read Length:	100
914s 	Genome masking 'N' cutoff frequency: 	1 in 100
914s 	# Read Pairs per Amplion:  1
914s 	Profile Type:             Combined
914s 	ID Tag:                   
914s 
914s Quality Profile(s)
914s 	First Read:   MiSeq v3 Length 251 R1 (built-in profile) 
914s 	First Read:   MiSeq v3 Length 251 R2 (built-in profile) 
914s 
914s Output files
914s 
914s   FASTQ Sequence Files:
914s 	 the 1st reads: ./amp_matepair1.fq
914s 	 the 2nd reads: ./amp_matepair2.fq
914s 
914s   ALN Alignment Files:
914s 	 the 1st reads: ./amp_matepair1.aln
914s 	 the 2nd reads: ./amp_matepair2.aln
914s 
914s   SAM Alignment File:
914s 	./amp_matepair.sam
914s 
914s 
914s     ====================ART====================
914s              ART_Illumina (2008-2016)          
914s           Q Version 2.5.8 (June 6, 2016)       
914s      Contact: Weichun Huang <whduke@gmail.com> 
914s     -------------------------------------------
914s 
914s                   Paired-end sequencing simulation
914s 
914s Total CPU time used: 0.036915
914s 
914s The random seed for the run: 777
914s 
914s Parameters used during run
914s 	Read Length:	100
914s 	Genome masking 'N' cutoff frequency: 	1 in 100
914s 	Fold Coverage:            10X
914s 	Mean Fragment Length:     500
914s 	Standard Deviation:       10
914s 	Profile Type:             Combined
914s 	ID Tag:                   
914s 
914s Quality Profile(s)
914s 	First Read:   HiSeqX v2.5 PCR free Length 151 R1 (built-in profile) 
914s 	First Read:   HiSeqX v2.5 PCR free Length 151 R2 (built-in profile) 
914s 
914s Output files
914s 
914s   FASTQ Sequence Files:
914s 	 the 1st reads: ./paired_end_com_f11.fq
914s 	 the 2nd reads: ./paired_end_com_f12.fq
914s 
914s   ALN Alignment Files:
914s 	 the 1st reads: ./paired_end_com_f11.aln
914s 	 the 2nd reads: ./paired_end_com_f12.aln
914s 
914s   SAM Alignment File:
914s 	./paired_end_com_f1.sam
914s 
914s 
914s     ====================ART====================
914s              ART_Illumina (2008-2016)          
914s           Q Version 2.5.8 (June 6, 2016)       
914s      Contact: Weichun Huang <whduke@gmail.com> 
914s     -------------------------------------------
914s 
914s                   Paired-end sequencing simulation
914s 
914s Total CPU time used: 0.035714
914s 
914s The random seed for the run: 777
914s 
914s Parameters used during run
914s 	Read Length:	100
914s 	Genome masking 'N' cutoff frequency: 	1 in 100
914s 	Fold Coverage:            10X
914s 	Mean Fragment Length:     500
914s 	Standard Deviation:       10
914s 	Profile Type:             Combined
914s 	ID Tag:                   
914s 
914s Quality Profile(s)
914s 	First Read:   HiSeqX v2.5 PCR free Length 151 R1 (built-in profile) 
914s 	First Read:   HiSeqX v2.5 PCR free Length 151 R2 (built-in profile) 
914s 
914s Output files
914s 
914s   FASTQ Sequence Files:
914s 	 the 1st reads: ./paired_end_com_f21.fq
914s 	 the 2nd reads: ./paired_end_com_f22.fq
914s 
914s   ALN Alignment Files:
914s 	 the 1st reads: ./paired_end_com_f21.aln
914s 	 the 2nd reads: ./paired_end_com_f22.aln
914s 
914s   SAM Alignment File:
914s 	./paired_end_com_f2.sam
914s 
914s 
914s     ====================ART====================
914s              ART_Illumina (2008-2016)          
914s           Q Version 2.5.8 (June 6, 2016)       
914s      Contact: Weichun Huang <whduke@gmail.com> 
914s     -------------------------------------------
914s 
914s                   Paired-end sequencing simulation
914s 
914s Total CPU time used: 0.038622
914s 
914s The random seed for the run: 1713488434
914s 
914s Parameters used during run
914s 	Read Length:	100
914s 	Genome masking 'N' cutoff frequency: 	1 in 100
914s 	Fold Coverage:            10X
914s 	Mean Fragment Length:     500
914s 	Standard Deviation:       10
914s 	First quality shift:      10
914s 	Second quality shift:     10
914s 	Profile Type:             Combined
914s 	ID Tag:                   
914s 
914s Quality Profile(s)
914s 	First Read:   HiSeq 2000 Length 100 R1 (built-in profile) 
914s 	First Read:   HiSeq 2000 Length 100 R2 (built-in profile) 
914s 
914s Output files
914s 
914s   FASTQ Sequence Files:
914s 	 the 1st reads: ./paired_end_com_f11.fq
914s 	 the 2nd reads: ./paired_end_com_f12.fq
914s 
914s   ALN Alignment Files:
914s 	 the 1st reads: ./paired_end_com_f11.aln
914s 	 the 2nd reads: ./paired_end_com_f12.aln
914s 
914s   SAM Alignment File:
914s 	./paired_end_com_f1.sam
914s 
914s 
914s     ====================ART====================
914s              ART_Illumina (2008-2016)          
914s           Q Version 2.5.8 (June 6, 2016)       
914s      Contact: Weichun Huang <whduke@gmail.com> 
914s     -------------------------------------------
914s 
914s                   Paired-end sequencing simulation
914s 
914s Total CPU time used: 0.040423
914s 
914s The random seed for the run: 1713488434
914s 
914s Parameters used during run
914s 	Read Length:	75
914s 	'N' genomic regions masking turned off
914s 	Fold Coverage:            10X
914s 	Mean Fragment Length:     500
914s 	Standard Deviation:       10
914s 	Profile Type:             Combined
914s 	ID Tag:                   
914s 
914s Quality Profile(s)
914s 	First Read:   NextSeq 500 v2 Length 76 R1 (built-in profile) 
914s 	First Read:   NextSeq 500 v2 Length 76 R2 (built-in profile) 
914s 
914s Output files
914s 
914s   FASTQ Sequence Files:
914s 	 the 1st reads: ./paired_nomask1.fq
914s 	 the 2nd reads: ./paired_nomask2.fq
914s 
914s   ALN Alignment Files:
914s 	 the 1st reads: ./paired_nomask1.aln
914s 	 the 2nd reads: ./paired_nomask2.aln
914s 
914s   SAM Alignment File:
914s 	./paired_nomask.sam
914s 
921s autopkgtest [01:00:41]: test run-unit-test: -----------------------]
925s autopkgtest [01:00:45]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
925s run-unit-test        PASS
929s autopkgtest [01:00:49]: @@@@@@@@@@@@@@@@@@@@ summary
929s run-unit-test        PASS