0s autopkgtest [11:19:10]: starting date and time: 2024-03-16 11:19:10+0000 0s autopkgtest [11:19:10]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [11:19:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k5t0xm01/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cmake,src:curl,src:glib2.0,src:libarchive,src:libpsl,src:libuv1,src:nettle,src:openssl,src:orthanc-python,src:qtbase-opensource-src --apt-upgrade seqan-raptor --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cmake/3.28.3-1build5 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libarchive/3.7.2-1.1ubuntu1 libpsl/0.21.2-1.1 libuv1/1.48.0-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 qtbase-opensource-src/5.15.12+dfsg-3ubuntu5' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-6.secgroup --name adt-noble-arm64-seqan-raptor-20240316-111910-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 95s autopkgtest [11:20:45]: testbed dpkg architecture: arm64 95s autopkgtest [11:20:45]: testbed apt version: 2.7.12 95s autopkgtest [11:20:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3694 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 96s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 96s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 96s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [641 kB] 96s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 96s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 96s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 96s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3955 kB] 97s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 97s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 97s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 98s Fetched 9039 kB in 2s (5398 kB/s) 99s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Calculating upgrade... 103s The following packages will be REMOVED: 103s libglib2.0-0 libssl3 103s The following NEW packages will be installed: 103s libglib2.0-0t64 libssl3t64 xdg-user-dirs 103s The following packages have been kept back: 103s curl 103s The following packages will be upgraded: 103s gir1.2-glib-2.0 libglib2.0-data openssl ubuntu-minimal ubuntu-standard 103s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 103s Need to get 4549 kB of archives. 103s After this operation, 211 kB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 103s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 103s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 104s Fetched 4549 kB in 1s (6491 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 104s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 104s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 104s udisks2 depends on libglib2.0-0 (>= 2.77.0). 104s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 104s python3-gi depends on libglib2.0-0 (>= 2.77.0). 104s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 104s netplan.io depends on libglib2.0-0 (>= 2.70.0). 104s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 104s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 104s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 104s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 104s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 104s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 104s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 104s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 104s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 104s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 104s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 104s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s fwupd depends on libglib2.0-0 (>= 2.79.0). 104s bolt depends on libglib2.0-0 (>= 2.56.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 105s Selecting previously unselected package libglib2.0-0t64:arm64. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 105s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 105s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 105s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 105s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 105s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 105s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 105s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 105s wget depends on libssl3 (>= 3.0.0). 105s u-boot-tools depends on libssl3 (>= 3.0.0). 105s tnftp depends on libssl3 (>= 3.0.0). 105s tcpdump depends on libssl3 (>= 3.0.0). 105s systemd-resolved depends on libssl3 (>= 3.0.0). 105s systemd depends on libssl3 (>= 3.0.0). 105s sudo depends on libssl3 (>= 3.0.0). 105s sbsigntool depends on libssl3 (>= 3.0.0). 105s rsync depends on libssl3 (>= 3.0.0). 105s python3-cryptography depends on libssl3 (>= 3.0.0). 105s openssh-server depends on libssl3 (>= 3.0.10). 105s openssh-client depends on libssl3 (>= 3.0.10). 105s mtd-utils depends on libssl3 (>= 3.0.0). 105s mokutil depends on libssl3 (>= 3.0.0). 105s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 105s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 105s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 105s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 105s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 105s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 105s libnvme1 depends on libssl3 (>= 3.0.0). 105s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 105s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 105s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 105s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 105s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 105s kmod depends on libssl3 (>= 3.0.0). 105s dhcpcd-base depends on libssl3 (>= 3.0.0). 105s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 105s 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 105s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 105s Selecting previously unselected package libssl3t64:arm64. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 105s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 105s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 105s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 105s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 105s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 105s Unpacking ubuntu-minimal (1.536) over (1.535) ... 105s Selecting previously unselected package xdg-user-dirs. 105s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 105s Unpacking xdg-user-dirs (0.18-1) ... 105s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 105s Unpacking ubuntu-standard (1.536) over (1.535) ... 105s Setting up ubuntu-minimal (1.536) ... 105s Setting up xdg-user-dirs (0.18-1) ... 105s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 105s Setting up ubuntu-standard (1.536) ... 105s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 105s No schema files found: doing nothing. 105s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 105s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 105s Setting up openssl (3.0.13-0ubuntu1) ... 105s Processing triggers for man-db (2.12.0-3) ... 106s Processing triggers for libc-bin (2.39-0ubuntu2) ... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 109s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 109s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 109s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 109s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 111s Reading package lists... 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Calculating upgrade... 114s The following packages have been kept back: 114s curl 114s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 119s autopkgtest [11:21:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 119s autopkgtest [11:21:09]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-raptor 122s Get:1 http://ftpmaster.internal/ubuntu noble/universe seqan-raptor 3.0.1+ds-5 (dsc) [2642 B] 122s Get:2 http://ftpmaster.internal/ubuntu noble/universe seqan-raptor 3.0.1+ds-5 (tar) [3085 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble/universe seqan-raptor 3.0.1+ds-5 (diff) [10.3 kB] 122s gpgv: Signature made Wed Sep 6 13:05:19 2023 UTC 122s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 122s gpgv: Can't check signature: No public key 122s dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found 123s autopkgtest [11:21:13]: testing package seqan-raptor version 3.0.1+ds-5 123s autopkgtest [11:21:13]: build not needed 124s autopkgtest [11:21:14]: test cwl: preparing testbed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Starting pkgProblemResolver with broken count: 0 127s Starting 2 pkgProblemResolver with broken count: 0 128s Done 129s The following additional packages will be installed: 129s cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core 129s fonts-dejavu-mono fonts-glyphicons-halflings graphviz libann0 libc-ares2 129s libcairo2 libcdt5 libcgraph6 libdatrie1 libdeflate0 libfontconfig1 libgd3 129s libgomp1 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 129s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap liblab-gamut1 liblerc4 129s libltdl7 libnode108 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 129s libpathplan4 libpixman-1-0 libsharpyuv0 libsm6 libthai-data libthai0 129s libtiff6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxmu6 libxpm4 129s libxrender1 libxslt1.1 libxt6 libyaml-cpp0.8 node-acorn node-busboy 129s node-cjs-module-lexer node-undici node-xtend nodejs python3-arcp 129s python3-argcomplete python3-cachecontrol python3-coloredlogs 129s python3-cwl-utils python3-dateutil python3-distutils python3-filelock 129s python3-humanfriendly python3-isodate python3-lib2to3 python3-lxml 129s python3-mistune python3-msgpack python3-mypy-extensions python3-networkx 129s python3-packaging python3-prov python3-psutil python3-pydot python3-rdflib 129s python3-ruamel.yaml python3-ruamel.yaml.clib python3-schema-salad 129s python3-setuptools python3-shellescape python3-spython seqan-raptor 129s seqan-raptor-doc x11-common 129s Suggested packages: 129s podman | docker.io | singularity-container gsfonts graphviz-doc libgd-tools 129s npm cwl-utils python-lxml-doc python-networkx-doc python3-gdal 129s python3-matplotlib python3-pygraphviz python3-scipy python-prov-doc 129s python-rdflib-doc python-setuptools-doc singularity-container 129s Recommended packages: 129s fonts-liberation2 libgts-bin nodejs-doc python3-bs4 python3-cssselect 129s python3-html5lib python3-numpy python3-sparqlwrapper black 129s The following NEW packages will be installed: 129s autopkgtest-satdep cwl-upgrader cwltool fontconfig fontconfig-config 129s fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings graphviz 129s libann0 libc-ares2 libcairo2 libcdt5 libcgraph6 libdatrie1 libdeflate0 129s libfontconfig1 libgd3 libgomp1 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 129s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 129s liblab-gamut1 liblerc4 libltdl7 libnode108 libpango-1.0-0 129s libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 129s libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libwebp7 libxaw7 129s libxcb-render0 libxcb-shm0 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6 129s libyaml-cpp0.8 node-acorn node-busboy node-cjs-module-lexer node-undici 129s node-xtend nodejs python3-arcp python3-argcomplete python3-cachecontrol 129s python3-coloredlogs python3-cwl-utils python3-dateutil python3-distutils 129s python3-filelock python3-humanfriendly python3-isodate python3-lib2to3 129s python3-lxml python3-mistune python3-msgpack python3-mypy-extensions 129s python3-networkx python3-packaging python3-prov python3-psutil python3-pydot 129s python3-rdflib python3-ruamel.yaml python3-ruamel.yaml.clib 129s python3-schema-salad python3-setuptools python3-shellescape python3-spython 129s seqan-raptor seqan-raptor-doc x11-common 129s 0 upgraded, 89 newly installed, 0 to remove and 1 not upgraded. 129s Need to get 30.9 MB/30.9 MB of archives. 129s After this operation, 140 MB of additional disk space will be used. 129s Get:1 /tmp/autopkgtest.xKu7Bo/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [740 B] 129s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml.clib arm64 0.2.8-1 [187 kB] 130s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-ruamel.yaml all 0.17.21-1 [86.6 kB] 130s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 python3-msgpack arm64 1.0.3-3build1 [93.0 kB] 130s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cachecontrol all 0.14.0-1 [19.0 kB] 130s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mistune all 3.0.2-1 [32.8 kB] 130s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-mypy-extensions all 1.0.0-1 [6148 B] 130s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-isodate all 0.6.1-2 [24.3 kB] 130s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rdflib all 6.1.1-3 [362 kB] 130s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-filelock all 3.13.1-1 [10.8 kB] 130s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 130s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 130s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-schema-salad arm64 8.5.20240102191335-1 [1433 kB] 130s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 cwl-upgrader all 1.2.11-1 [16.0 kB] 130s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-argcomplete all 3.1.4-1 [33.5 kB] 130s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-humanfriendly all 10.0-3 [70.4 kB] 130s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 130s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 python3-packaging all 23.2-1 [40.6 kB] 130s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-cwl-utils all 0.32-1 [118 kB] 130s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 python3-dateutil all 2.8.2-3 [79.2 kB] 130s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.35-1 [161 kB] 130s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lxml arm64 5.1.0-1 [2042 kB] 130s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 python3-networkx all 2.8.8-1ubuntu1 [1468 kB] 130s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-prov all 2.0.0-2 [96.3 kB] 130s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 python3-psutil arm64 5.9.8-1 [196 kB] 130s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libann0 arm64 1.1.2+doc-9 [25.1 kB] 130s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libcdt5 arm64 2.42.2-8build1 [20.3 kB] 130s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libcgraph6 arm64 2.42.2-8build1 [44.8 kB] 130s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 130s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 130s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 130s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 130s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 130s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 130s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 130s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 130s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 130s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 130s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 130s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 130s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 130s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgd3 arm64 2.3.3-9ubuntu1 [119 kB] 130s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-5 [157 kB] 130s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 130s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 130s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 130s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 130s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 130s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 130s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 130s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 130s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 130s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 130s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 130s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 130s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 130s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 130s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 130s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libpathplan4 arm64 2.42.2-8build1 [22.6 kB] 130s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libgvc6 arm64 2.42.2-8build1 [692 kB] 131s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libgvpr2 arm64 2.42.2-8build1 [187 kB] 131s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblab-gamut1 arm64 2.42.2-8build1 [1860 kB] 131s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 131s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 131s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 131s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 131s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 131s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 131s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 graphviz arm64 2.42.2-8build1 [613 kB] 131s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-pydot all 1.4.2-2 [24.4 kB] 131s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-shellescape all 3.4.1-5 [5064 B] 131s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-spython all 0.3.13-2 [56.2 kB] 131s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-arcp all 0.2.1-6 [13.6 kB] 131s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] 131s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] 131s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2 [396 kB] 131s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 cwltool all 3.1.20240112164112-2 [509 kB] 131s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 131s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libc-ares2 arm64 1.27.0-1 [74.1 kB] 131s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 node-xtend all 4.0.2-3 [3902 B] 131s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 nodejs arm64 18.19.1+dfsg-2ubuntu4 [306 kB] 131s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 131s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 131s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 node-busboy all 1.6.0+~cs2.6.0-2 [17.3 kB] 131s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 node-undici all 5.26.3+dfsg1+~cs23.10.12-2 [325 kB] 131s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libnode108 arm64 18.19.1+dfsg-2ubuntu4 [11.2 MB] 131s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-6 [112 kB] 131s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 seqan-raptor arm64 3.0.1+ds-5 [648 kB] 131s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 132s Fetched 30.9 MB in 2s (16.4 MB/s) 132s Selecting previously unselected package python3-ruamel.yaml.clib:arm64. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 132s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8-1_arm64.deb ... 132s Unpacking python3-ruamel.yaml.clib:arm64 (0.2.8-1) ... 132s Selecting previously unselected package python3-ruamel.yaml. 132s Preparing to unpack .../01-python3-ruamel.yaml_0.17.21-1_all.deb ... 132s Unpacking python3-ruamel.yaml (0.17.21-1) ... 132s Selecting previously unselected package python3-msgpack. 132s Preparing to unpack .../02-python3-msgpack_1.0.3-3build1_arm64.deb ... 132s Unpacking python3-msgpack (1.0.3-3build1) ... 132s Selecting previously unselected package python3-cachecontrol. 133s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 133s Unpacking python3-cachecontrol (0.14.0-1) ... 133s Selecting previously unselected package python3-mistune. 133s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 133s Unpacking python3-mistune (3.0.2-1) ... 133s Selecting previously unselected package python3-mypy-extensions. 133s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 133s Unpacking python3-mypy-extensions (1.0.0-1) ... 133s Selecting previously unselected package python3-isodate. 133s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 133s Unpacking python3-isodate (0.6.1-2) ... 133s Selecting previously unselected package python3-rdflib. 133s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 133s Unpacking python3-rdflib (6.1.1-3) ... 133s Selecting previously unselected package python3-filelock. 133s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 133s Unpacking python3-filelock (3.13.1-1) ... 133s Selecting previously unselected package fonts-glyphicons-halflings. 133s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 133s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 133s Selecting previously unselected package libjs-bootstrap. 133s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 133s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 133s Selecting previously unselected package python3-schema-salad. 133s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1_arm64.deb ... 133s Unpacking python3-schema-salad (8.5.20240102191335-1) ... 133s Selecting previously unselected package cwl-upgrader. 133s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 133s Unpacking cwl-upgrader (1.2.11-1) ... 133s Selecting previously unselected package python3-argcomplete. 133s Preparing to unpack .../13-python3-argcomplete_3.1.4-1_all.deb ... 133s Unpacking python3-argcomplete (3.1.4-1) ... 133s Selecting previously unselected package python3-humanfriendly. 133s Preparing to unpack .../14-python3-humanfriendly_10.0-3_all.deb ... 133s Unpacking python3-humanfriendly (10.0-3) ... 133s Selecting previously unselected package python3-coloredlogs. 133s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 133s Unpacking python3-coloredlogs (15.0.1-1) ... 133s Selecting previously unselected package python3-packaging. 133s Preparing to unpack .../16-python3-packaging_23.2-1_all.deb ... 133s Unpacking python3-packaging (23.2-1) ... 134s Selecting previously unselected package python3-cwl-utils. 134s Preparing to unpack .../17-python3-cwl-utils_0.32-1_all.deb ... 134s Unpacking python3-cwl-utils (0.32-1) ... 134s Selecting previously unselected package python3-dateutil. 134s Preparing to unpack .../18-python3-dateutil_2.8.2-3_all.deb ... 134s Unpacking python3-dateutil (2.8.2-3) ... 134s Selecting previously unselected package libxslt1.1:arm64. 134s Preparing to unpack .../19-libxslt1.1_1.1.35-1_arm64.deb ... 134s Unpacking libxslt1.1:arm64 (1.1.35-1) ... 134s Selecting previously unselected package python3-lxml:arm64. 134s Preparing to unpack .../20-python3-lxml_5.1.0-1_arm64.deb ... 134s Unpacking python3-lxml:arm64 (5.1.0-1) ... 134s Selecting previously unselected package python3-networkx. 134s Preparing to unpack .../21-python3-networkx_2.8.8-1ubuntu1_all.deb ... 134s Unpacking python3-networkx (2.8.8-1ubuntu1) ... 134s Selecting previously unselected package python3-prov. 134s Preparing to unpack .../22-python3-prov_2.0.0-2_all.deb ... 134s Unpacking python3-prov (2.0.0-2) ... 134s Selecting previously unselected package python3-psutil. 134s Preparing to unpack .../23-python3-psutil_5.9.8-1_arm64.deb ... 134s Unpacking python3-psutil (5.9.8-1) ... 134s Selecting previously unselected package libann0. 134s Preparing to unpack .../24-libann0_1.1.2+doc-9_arm64.deb ... 134s Unpacking libann0 (1.1.2+doc-9) ... 134s Selecting previously unselected package libcdt5:arm64. 134s Preparing to unpack .../25-libcdt5_2.42.2-8build1_arm64.deb ... 134s Unpacking libcdt5:arm64 (2.42.2-8build1) ... 134s Selecting previously unselected package libcgraph6:arm64. 134s Preparing to unpack .../26-libcgraph6_2.42.2-8build1_arm64.deb ... 134s Unpacking libcgraph6:arm64 (2.42.2-8build1) ... 134s Selecting previously unselected package fonts-dejavu-mono. 134s Preparing to unpack .../27-fonts-dejavu-mono_2.37-8_all.deb ... 134s Unpacking fonts-dejavu-mono (2.37-8) ... 134s Selecting previously unselected package fonts-dejavu-core. 134s Preparing to unpack .../28-fonts-dejavu-core_2.37-8_all.deb ... 135s Unpacking fonts-dejavu-core (2.37-8) ... 135s Selecting previously unselected package fontconfig-config. 135s Preparing to unpack .../29-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 135s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 135s Selecting previously unselected package libfontconfig1:arm64. 135s Preparing to unpack .../30-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 135s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 135s Selecting previously unselected package libjpeg-turbo8:arm64. 135s Preparing to unpack .../31-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 135s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 135s Selecting previously unselected package libjpeg8:arm64. 135s Preparing to unpack .../32-libjpeg8_8c-2ubuntu11_arm64.deb ... 135s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 135s Selecting previously unselected package libdeflate0:arm64. 135s Preparing to unpack .../33-libdeflate0_1.19-1_arm64.deb ... 135s Unpacking libdeflate0:arm64 (1.19-1) ... 135s Selecting previously unselected package libjbig0:arm64. 135s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 135s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 135s Selecting previously unselected package liblerc4:arm64. 135s Preparing to unpack .../35-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 135s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 135s Selecting previously unselected package libsharpyuv0:arm64. 135s Preparing to unpack .../36-libsharpyuv0_1.3.2-0.4_arm64.deb ... 135s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 135s Selecting previously unselected package libwebp7:arm64. 135s Preparing to unpack .../37-libwebp7_1.3.2-0.4_arm64.deb ... 135s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 135s Selecting previously unselected package libtiff6:arm64. 135s Preparing to unpack .../38-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 135s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 135s Selecting previously unselected package libxpm4:arm64. 136s Preparing to unpack .../39-libxpm4_1%3a3.5.17-1_arm64.deb ... 136s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 136s Selecting previously unselected package libgd3:arm64. 136s Preparing to unpack .../40-libgd3_2.3.3-9ubuntu1_arm64.deb ... 136s Unpacking libgd3:arm64 (2.3.3-9ubuntu1) ... 136s Selecting previously unselected package libgts-0.7-5:arm64. 136s Preparing to unpack .../41-libgts-0.7-5_0.7.6+darcs121130-5_arm64.deb ... 136s Unpacking libgts-0.7-5:arm64 (0.7.6+darcs121130-5) ... 136s Selecting previously unselected package libpixman-1-0:arm64. 136s Preparing to unpack .../42-libpixman-1-0_0.42.2-1_arm64.deb ... 136s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 136s Selecting previously unselected package libxcb-render0:arm64. 136s Preparing to unpack .../43-libxcb-render0_1.15-1_arm64.deb ... 136s Unpacking libxcb-render0:arm64 (1.15-1) ... 136s Selecting previously unselected package libxcb-shm0:arm64. 136s Preparing to unpack .../44-libxcb-shm0_1.15-1_arm64.deb ... 136s Unpacking libxcb-shm0:arm64 (1.15-1) ... 136s Selecting previously unselected package libxrender1:arm64. 136s Preparing to unpack .../45-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 136s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 136s Selecting previously unselected package libcairo2:arm64. 136s Preparing to unpack .../46-libcairo2_1.18.0-1_arm64.deb ... 136s Unpacking libcairo2:arm64 (1.18.0-1) ... 136s Selecting previously unselected package libltdl7:arm64. 136s Preparing to unpack .../47-libltdl7_2.4.7-7_arm64.deb ... 136s Unpacking libltdl7:arm64 (2.4.7-7) ... 136s Selecting previously unselected package fontconfig. 136s Preparing to unpack .../48-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 136s Unpacking fontconfig (2.15.0-1ubuntu1) ... 136s Selecting previously unselected package libgraphite2-3:arm64. 136s Preparing to unpack .../49-libgraphite2-3_1.3.14-2_arm64.deb ... 136s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 136s Selecting previously unselected package libharfbuzz0b:arm64. 136s Preparing to unpack .../50-libharfbuzz0b_8.3.0-2_arm64.deb ... 136s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 136s Selecting previously unselected package libthai-data. 136s Preparing to unpack .../51-libthai-data_0.1.29-2_all.deb ... 136s Unpacking libthai-data (0.1.29-2) ... 136s Selecting previously unselected package libdatrie1:arm64. 136s Preparing to unpack .../52-libdatrie1_0.2.13-3_arm64.deb ... 136s Unpacking libdatrie1:arm64 (0.2.13-3) ... 136s Selecting previously unselected package libthai0:arm64. 136s Preparing to unpack .../53-libthai0_0.1.29-2_arm64.deb ... 136s Unpacking libthai0:arm64 (0.1.29-2) ... 136s Selecting previously unselected package libpango-1.0-0:arm64. 136s Preparing to unpack .../54-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 136s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 137s Selecting previously unselected package libpangoft2-1.0-0:arm64. 137s Preparing to unpack .../55-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 137s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 137s Selecting previously unselected package libpangocairo-1.0-0:arm64. 137s Preparing to unpack .../56-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 137s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 137s Selecting previously unselected package libpathplan4:arm64. 137s Preparing to unpack .../57-libpathplan4_2.42.2-8build1_arm64.deb ... 137s Unpacking libpathplan4:arm64 (2.42.2-8build1) ... 137s Selecting previously unselected package libgvc6. 137s Preparing to unpack .../58-libgvc6_2.42.2-8build1_arm64.deb ... 137s Unpacking libgvc6 (2.42.2-8build1) ... 137s Selecting previously unselected package libgvpr2:arm64. 137s Preparing to unpack .../59-libgvpr2_2.42.2-8build1_arm64.deb ... 137s Unpacking libgvpr2:arm64 (2.42.2-8build1) ... 137s Selecting previously unselected package liblab-gamut1:arm64. 137s Preparing to unpack .../60-liblab-gamut1_2.42.2-8build1_arm64.deb ... 137s Unpacking liblab-gamut1:arm64 (2.42.2-8build1) ... 137s Selecting previously unselected package x11-common. 137s Preparing to unpack .../61-x11-common_1%3a7.7+23ubuntu2_all.deb ... 137s Unpacking x11-common (1:7.7+23ubuntu2) ... 137s Selecting previously unselected package libice6:arm64. 137s Preparing to unpack .../62-libice6_2%3a1.0.10-1build2_arm64.deb ... 137s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 137s Selecting previously unselected package libsm6:arm64. 137s Preparing to unpack .../63-libsm6_2%3a1.2.3-1build2_arm64.deb ... 137s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 137s Selecting previously unselected package libxt6:arm64. 137s Preparing to unpack .../64-libxt6_1%3a1.2.1-1.1_arm64.deb ... 137s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 137s Selecting previously unselected package libxmu6:arm64. 137s Preparing to unpack .../65-libxmu6_2%3a1.1.3-3_arm64.deb ... 137s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 137s Selecting previously unselected package libxaw7:arm64. 137s Preparing to unpack .../66-libxaw7_2%3a1.0.14-1_arm64.deb ... 137s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 137s Selecting previously unselected package graphviz. 137s Preparing to unpack .../67-graphviz_2.42.2-8build1_arm64.deb ... 137s Unpacking graphviz (2.42.2-8build1) ... 137s Selecting previously unselected package python3-pydot. 137s Preparing to unpack .../68-python3-pydot_1.4.2-2_all.deb ... 137s Unpacking python3-pydot (1.4.2-2) ... 137s Selecting previously unselected package python3-shellescape. 137s Preparing to unpack .../69-python3-shellescape_3.4.1-5_all.deb ... 137s Unpacking python3-shellescape (3.4.1-5) ... 137s Selecting previously unselected package python3-spython. 138s Preparing to unpack .../70-python3-spython_0.3.13-2_all.deb ... 138s Unpacking python3-spython (0.3.13-2) ... 138s Selecting previously unselected package python3-arcp. 138s Preparing to unpack .../71-python3-arcp_0.2.1-6_all.deb ... 138s Unpacking python3-arcp (0.2.1-6) ... 138s Selecting previously unselected package python3-lib2to3. 138s Preparing to unpack .../72-python3-lib2to3_3.11.5-1_all.deb ... 138s Unpacking python3-lib2to3 (3.11.5-1) ... 138s Selecting previously unselected package python3-distutils. 138s Preparing to unpack .../73-python3-distutils_3.11.5-1_all.deb ... 138s Unpacking python3-distutils (3.11.5-1) ... 138s Selecting previously unselected package python3-setuptools. 138s Preparing to unpack .../74-python3-setuptools_68.1.2-2_all.deb ... 138s Unpacking python3-setuptools (68.1.2-2) ... 138s Selecting previously unselected package cwltool. 138s Preparing to unpack .../75-cwltool_3.1.20240112164112-2_all.deb ... 138s Unpacking cwltool (3.1.20240112164112-2) ... 138s Selecting previously unselected package libgomp1:arm64. 138s Preparing to unpack .../76-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libc-ares2:arm64. 138s Preparing to unpack .../77-libc-ares2_1.27.0-1_arm64.deb ... 138s Unpacking libc-ares2:arm64 (1.27.0-1) ... 138s Selecting previously unselected package node-xtend. 138s Preparing to unpack .../78-node-xtend_4.0.2-3_all.deb ... 138s Unpacking node-xtend (4.0.2-3) ... 138s Selecting previously unselected package nodejs. 138s Preparing to unpack .../79-nodejs_18.19.1+dfsg-2ubuntu4_arm64.deb ... 138s Unpacking nodejs (18.19.1+dfsg-2ubuntu4) ... 138s Selecting previously unselected package node-acorn. 138s Preparing to unpack .../80-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 138s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 138s Selecting previously unselected package node-cjs-module-lexer. 139s Preparing to unpack .../81-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 139s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 139s Selecting previously unselected package node-busboy. 139s Preparing to unpack .../82-node-busboy_1.6.0+~cs2.6.0-2_all.deb ... 139s Unpacking node-busboy (1.6.0+~cs2.6.0-2) ... 139s Selecting previously unselected package node-undici. 139s Preparing to unpack .../83-node-undici_5.26.3+dfsg1+~cs23.10.12-2_all.deb ... 139s Unpacking node-undici (5.26.3+dfsg1+~cs23.10.12-2) ... 139s Selecting previously unselected package libnode108:arm64. 139s Preparing to unpack .../84-libnode108_18.19.1+dfsg-2ubuntu4_arm64.deb ... 139s Unpacking libnode108:arm64 (18.19.1+dfsg-2ubuntu4) ... 139s Selecting previously unselected package libyaml-cpp0.8:arm64. 139s Preparing to unpack .../85-libyaml-cpp0.8_0.8.0+dfsg-6_arm64.deb ... 139s Unpacking libyaml-cpp0.8:arm64 (0.8.0+dfsg-6) ... 139s Selecting previously unselected package seqan-raptor. 139s Preparing to unpack .../86-seqan-raptor_3.0.1+ds-5_arm64.deb ... 139s Unpacking seqan-raptor (3.0.1+ds-5) ... 139s Selecting previously unselected package seqan-raptor-doc. 139s Preparing to unpack .../87-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 139s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 139s Selecting previously unselected package autopkgtest-satdep. 139s Preparing to unpack .../88-1-autopkgtest-satdep.deb ... 139s Unpacking autopkgtest-satdep (0) ... 139s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 139s Setting up python3-arcp (0.2.1-6) ... 140s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 140s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 140s Setting up python3-filelock (3.13.1-1) ... 140s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 140s Setting up libxpm4:arm64 (1:3.5.17-1) ... 140s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 140s Setting up libdatrie1:arm64 (0.2.13-3) ... 140s Setting up libxcb-render0:arm64 (1.15-1) ... 140s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 140s Setting up python3-mypy-extensions (1.0.0-1) ... 140s Setting up libyaml-cpp0.8:arm64 (0.8.0+dfsg-6) ... 140s Setting up liblab-gamut1:arm64 (2.42.2-8build1) ... 140s Setting up python3-ruamel.yaml.clib:arm64 (0.2.8-1) ... 140s Setting up x11-common (1:7.7+23ubuntu2) ... 141s Setting up libdeflate0:arm64 (1.19-1) ... 141s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 141s Setting up libxcb-shm0:arm64 (1.15-1) ... 141s Setting up libc-ares2:arm64 (1.27.0-1) ... 141s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 141s Setting up python3-networkx (2.8.8-1ubuntu1) ... 143s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' 143s "graph [edge [ source u'u\4200' target u'u\4200' ] " 143s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' 143s + "node [ id u'u\4200' label b ] ]" 143s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 143s Setting up python3-psutil (5.9.8-1) ... 143s Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-5) ... 143s Setting up python3-isodate (0.6.1-2) ... 143s Setting up python3-packaging (23.2-1) ... 144s Setting up python3-humanfriendly (10.0-3) ... 144s Setting up python3-spython (0.3.13-2) ... 144s Setting up libpathplan4:arm64 (2.42.2-8build1) ... 144s Setting up libann0 (1.1.2+doc-9) ... 144s Setting up fonts-dejavu-mono (2.37-8) ... 144s Setting up fonts-dejavu-core (2.37-8) ... 144s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 144s Setting up libltdl7:arm64 (2.4.7-7) ... 144s Setting up libwebp7:arm64 (1.3.2-0.4) ... 144s Setting up python3-ruamel.yaml (0.17.21-1) ... 144s Setting up python3-rdflib (6.1.1-3) ... 145s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 145s """Converts the given graph into a networkx.MultiDiGraph. 145s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 145s """Converts the given graph into a networkx.DiGraph. 145s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 145s """Converts the given graph into a networkx.Graph. 145s Setting up libxslt1.1:arm64 (1.1.35-1) ... 145s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 145s Setting up libthai-data (0.1.29-2) ... 145s Setting up python3-dateutil (2.8.2-3) ... 145s Setting up python3-msgpack (1.0.3-3build1) ... 145s Setting up libcdt5:arm64 (2.42.2-8build1) ... 145s Setting up libcgraph6:arm64 (2.42.2-8build1) ... 145s Setting up python3-cachecontrol (0.14.0-1) ... 145s Setting up python3-shellescape (3.4.1-5) ... 146s Setting up node-xtend (4.0.2-3) ... 146s Setting up seqan-raptor (3.0.1+ds-5) ... 146s Setting up python3-argcomplete (3.1.4-1) ... 146s Setting up python3-lib2to3 (3.11.5-1) ... 146s Setting up python3-coloredlogs (15.0.1-1) ... 146s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 146s Setting up python3-mistune (3.0.2-1) ... 146s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 146s Setting up node-busboy (1.6.0+~cs2.6.0-2) ... 146s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 146s Setting up python3-distutils (3.11.5-1) ... 146s python3.12: can't get files for byte-compilation 146s Setting up libice6:arm64 (2:1.0.10-1build2) ... 146s Setting up python3-setuptools (68.1.2-2) ... 147s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 147s Setting up python3-schema-salad (8.5.20240102191335-1) ... 148s Setting up libthai0:arm64 (0.1.29-2) ... 148s Setting up cwl-upgrader (1.2.11-1) ... 148s Setting up libgvpr2:arm64 (2.42.2-8build1) ... 148s Setting up node-undici (5.26.3+dfsg1+~cs23.10.12-2) ... 148s Setting up python3-lxml:arm64 (5.1.0-1) ... 148s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 148s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 148s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 148s Setting up fontconfig (2.15.0-1ubuntu1) ... 151s Regenerating fonts cache... done. 151s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 151s Setting up python3-cwl-utils (0.32-1) ... 152s Setting up libcairo2:arm64 (1.18.0-1) ... 152s Setting up python3-prov (2.0.0-2) ... 152s Setting up libgd3:arm64 (2.3.3-9ubuntu1) ... 152s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 152s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 152s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 152s Setting up libxmu6:arm64 (2:1.1.3-3) ... 152s Setting up libxaw7:arm64 (2:1.0.14-1) ... 152s Setting up libgvc6 (2.42.2-8build1) ... 154s Setting up graphviz (2.42.2-8build1) ... 154s Setting up python3-pydot (1.4.2-2) ... 154s Setting up cwltool (3.1.20240112164112-2) ... 154s Setting up libnode108:arm64 (18.19.1+dfsg-2ubuntu4) ... 154s Setting up nodejs (18.19.1+dfsg-2ubuntu4) ... 154s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 154s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 154s Setting up autopkgtest-satdep (0) ... 154s Processing triggers for libc-bin (2.39-0ubuntu2) ... 155s Processing triggers for man-db (2.12.0-3) ... 163s (Reading database ... 81152 files and directories currently installed.) 163s Removing autopkgtest-satdep (0) ... 164s autopkgtest [11:21:54]: test cwl: [----------------------- 166s INFO /usr/bin/cwltool 3.1.20240112164112 166s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 168s INFO [job raptor-build.cwl] /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/km9rkqdv$ raptor \ 168s build \ 168s --input \ 168s input_bins_filepaths.txt \ 168s --output \ 168s 0_bins_window_19.index 168s ============= Timings ============= 168s Wall clock time [s]: 0.01 168s Peak memory usage [MiB]: 72.5 168s Determine IBF size [s]: 0.00 168s Index allocation [s]: 0.00 168s User bin I/O avg per thread [s]: 0.00 168s User bin I/O sum [s]: 0.00 168s Fill IBF avg per thread [s]: 0.00 168s Fill IBF sum [s]: 0.00 168s Store index [s]: 0.00 168s INFO [job raptor-build.cwl] completed success 168s INFO Final process status is success 169s "checksum": "sha1$098169f476fb949b0d08f2d1e05881049819b811", 169s INFO /usr/bin/cwltool 3.1.20240112164112 169s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 171s INFO [job raptor-build.cwl] /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/pv440z8o$ raptor \ 171s build \ 171s --input \ 171s input_bins_filepaths.txt \ 171s --output \ 171s 0_bins_window_19.index 171s ============= Timings ============= 171s Wall clock time [s]: 0.01 171s Peak memory usage [MiB]: 72.8 171s Determine IBF size [s]: 0.00 171s Index allocation [s]: 0.00 171s User bin I/O avg per thread [s]: 0.00 171s User bin I/O sum [s]: 0.00 171s Fill IBF avg per thread [s]: 0.00 171s Fill IBF sum [s]: 0.00 171s Store index [s]: 0.00 171s INFO [job raptor-build.cwl] completed success 171s INFO Final process status is success 171s "checksum": "sha1$64a4328eb3dab99bf6ecd38f84f4ae45fd01a4dd", 172s autopkgtest [11:22:02]: test cwl: -----------------------] 172s cwl PASS 172s autopkgtest [11:22:02]: test cwl: - - - - - - - - - - results - - - - - - - - - - 173s autopkgtest [11:22:03]: test run-unit-test: preparing testbed 301s autopkgtest [11:24:11]: testbed dpkg architecture: arm64 301s autopkgtest [11:24:11]: testbed apt version: 2.7.12 301s autopkgtest [11:24:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 301s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 302s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 302s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 302s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 302s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3694 kB] 302s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [641 kB] 302s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 302s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 302s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 302s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3955 kB] 302s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 302s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 302s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 304s Fetched 9039 kB in 2s (4504 kB/s) 305s Reading package lists... 308s Reading package lists... 309s Building dependency tree... 309s Reading state information... 310s Calculating upgrade... 311s The following packages will be REMOVED: 311s libglib2.0-0 libssl3 311s The following NEW packages will be installed: 311s libglib2.0-0t64 libssl3t64 xdg-user-dirs 311s The following packages have been kept back: 311s curl 311s The following packages will be upgraded: 311s gir1.2-glib-2.0 libglib2.0-data openssl ubuntu-minimal ubuntu-standard 311s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 311s Need to get 4549 kB of archives. 311s After this operation, 211 kB of additional disk space will be used. 311s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 311s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 312s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 312s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 312s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 312s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 312s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 312s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 313s Fetched 4549 kB in 1s (5833 kB/s) 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 313s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 313s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 313s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 313s udisks2 depends on libglib2.0-0 (>= 2.77.0). 313s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 313s python3-gi depends on libglib2.0-0 (>= 2.77.0). 313s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 313s netplan.io depends on libglib2.0-0 (>= 2.70.0). 313s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 313s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 313s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 313s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 313s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 313s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 313s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 313s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 313s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 313s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 313s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 313s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 313s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 313s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 313s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 313s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 313s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 313s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 313s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 313s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 313s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 313s fwupd depends on libglib2.0-0 (>= 2.79.0). 313s bolt depends on libglib2.0-0 (>= 2.56.0). 313s 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 313s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 313s Selecting previously unselected package libglib2.0-0t64:arm64. 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 313s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 313s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 313s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 313s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 313s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 313s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 314s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 314s wget depends on libssl3 (>= 3.0.0). 314s u-boot-tools depends on libssl3 (>= 3.0.0). 314s tnftp depends on libssl3 (>= 3.0.0). 314s tcpdump depends on libssl3 (>= 3.0.0). 314s systemd-resolved depends on libssl3 (>= 3.0.0). 314s systemd depends on libssl3 (>= 3.0.0). 314s sudo depends on libssl3 (>= 3.0.0). 314s sbsigntool depends on libssl3 (>= 3.0.0). 314s rsync depends on libssl3 (>= 3.0.0). 314s python3-cryptography depends on libssl3 (>= 3.0.0). 314s openssh-server depends on libssl3 (>= 3.0.10). 314s openssh-client depends on libssl3 (>= 3.0.10). 314s mtd-utils depends on libssl3 (>= 3.0.0). 314s mokutil depends on libssl3 (>= 3.0.0). 314s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 314s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 314s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 314s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 314s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 314s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 314s libnvme1 depends on libssl3 (>= 3.0.0). 314s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 314s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 314s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 314s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 314s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 314s kmod depends on libssl3 (>= 3.0.0). 314s dhcpcd-base depends on libssl3 (>= 3.0.0). 314s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 314s 314s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 314s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 314s Selecting previously unselected package libssl3t64:arm64. 314s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 314s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 314s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 314s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 314s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 314s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 314s Unpacking ubuntu-minimal (1.536) over (1.535) ... 314s Selecting previously unselected package xdg-user-dirs. 314s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 314s Unpacking xdg-user-dirs (0.18-1) ... 314s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 314s Unpacking ubuntu-standard (1.536) over (1.535) ... 314s Setting up ubuntu-minimal (1.536) ... 314s Setting up xdg-user-dirs (0.18-1) ... 314s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 314s Setting up ubuntu-standard (1.536) ... 314s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 314s No schema files found: doing nothing. 314s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 314s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 314s Setting up openssl (3.0.13-0ubuntu1) ... 314s Processing triggers for man-db (2.12.0-3) ... 315s Processing triggers for libc-bin (2.39-0ubuntu2) ... 315s Reading package lists... 316s Building dependency tree... 316s Reading state information... 316s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 317s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 317s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 317s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 317s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 319s Reading package lists... 319s Reading package lists... 320s Building dependency tree... 320s Reading state information... 320s Calculating upgrade... 320s The following packages have been kept back: 320s curl 320s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 321s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 326s Reading package lists... 326s Building dependency tree... 326s Reading state information... 326s Starting pkgProblemResolver with broken count: 0 326s Starting 2 pkgProblemResolver with broken count: 0 326s Done 327s The following additional packages will be installed: 327s cmake cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 327s curl g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 327s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu googletest libarchive13t64 327s libasan8 libatomic1 libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcereal-dev 327s libcrypt-dev libcurl4t64 libgcc-13-dev libgomp1 libgtest-dev libhwasan0 327s libisl23 libitm1 libjsoncpp25 liblsan0 libmpc3 libnettle8t64 libnsl-dev 327s libpkgconf3 libpsl5t64 librhash0 libseqan3-dev libsimde-dev libstdc++-13-dev 327s libtirpc-dev libtsan2 libubsan1 libuv1t64 libxxhash-dev libyaml-cpp-dev 327s libyaml-cpp0.8 linux-libc-dev pkg-config pkgconf pkgconf-bin rapidjson-dev 327s rpcsvc-proto seqan-raptor seqan-raptor-doc zlib1g-dev 327s Suggested packages: 327s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-13-locales 327s cpp-13-doc gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool 327s flex bison gdb gcc-doc gdb-aarch64-linux-gnu lrzip glibc-doc 327s libstdc++-13-doc rapidjson-doc cwl-runner 327s Recommended packages: 327s bzip2-doc manpages manpages-dev libc-devtools 327s The following packages will be REMOVED: 327s libarchive13 libcurl4 libnettle8 libpsl5 libuv1 327s The following NEW packages will be installed: 327s autopkgtest-satdep cmake cmake-data cpp cpp-13 cpp-13-aarch64-linux-gnu 327s cpp-aarch64-linux-gnu g++ g++-13 g++-13-aarch64-linux-gnu 327s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 327s gcc-aarch64-linux-gnu googletest libarchive13t64 libasan8 libatomic1 327s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcereal-dev libcrypt-dev 327s libcurl4t64 libgcc-13-dev libgomp1 libgtest-dev libhwasan0 libisl23 libitm1 327s libjsoncpp25 liblsan0 libmpc3 libnettle8t64 libnsl-dev libpkgconf3 327s libpsl5t64 librhash0 libseqan3-dev libsimde-dev libstdc++-13-dev 327s libtirpc-dev libtsan2 libubsan1 libuv1t64 libxxhash-dev libyaml-cpp-dev 327s libyaml-cpp0.8 linux-libc-dev pkg-config pkgconf pkgconf-bin rapidjson-dev 327s rpcsvc-proto seqan-raptor seqan-raptor-doc zlib1g-dev 327s The following packages will be upgraded: 327s curl 327s 1 upgraded, 59 newly installed, 5 to remove and 0 not upgraded. 327s Need to get 81.0 MB/81.0 MB of archives. 327s After this operation, 297 MB of additional disk space will be used. 327s Get:1 /tmp/autopkgtest.xKu7Bo/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [776 B] 327s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnettle8t64 arm64 3.9.1-2.2 [192 kB] 328s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libarchive13t64 arm64 3.7.2-1.1ubuntu1 [376 kB] 328s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 328s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 328s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 328s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libuv1t64 arm64 1.48.0-1.1 [95.3 kB] 328s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libjsoncpp25 arm64 1.9.5-6 [76.0 kB] 328s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 librhash0 arm64 1.4.3-3 [125 kB] 328s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 cmake-data all 3.28.3-1build5 [2155 kB] 328s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 cmake arm64 3.28.3-1build5 [10.3 MB] 328s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 328s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 328s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 328s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 328s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 328s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 328s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 328s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 328s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 328s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 329s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 329s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 329s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 329s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 329s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 329s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 329s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 329s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 329s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 329s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 329s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 329s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 329s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 329s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 329s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 330s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 330s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 330s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 330s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 330s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 330s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 330s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 330s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 googletest all 1.14.0-1 [521 kB] 330s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 330s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 rapidjson-dev all 1.1.0+dfsg2-7.1 [96.7 kB] 330s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 libcereal-dev arm64 1.3.2+dfsg-5 [222 kB] 330s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libgtest-dev arm64 1.14.0-1 [266 kB] 330s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 330s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 330s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libseqan3-dev all 3.3.0+ds-1 [748 kB] 330s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libsimde-dev all 0.7.2-6 [261 kB] 330s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash-dev arm64 0.8.2-2 [80.3 kB] 330s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-6 [112 kB] 330s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libyaml-cpp-dev arm64 0.8.0+dfsg-6 [189 kB] 330s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 330s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 330s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 330s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 seqan-raptor arm64 3.0.1+ds-5 [648 kB] 330s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 331s Fetched 81.0 MB in 3s (25.5 MB/s) 331s dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: 331s librtmp1:arm64 depends on libnettle8. 331s libhogweed6:arm64 depends on libnettle8. 331s libgnutls30:arm64 depends on libnettle8 (>= 3.9~). 331s libcurl3-gnutls:arm64 depends on libnettle8. 331s libarchive13:arm64 depends on libnettle8. 331s 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 331s Removing libnettle8:arm64 (3.9.1-2) ... 331s Selecting previously unselected package libnettle8t64:arm64. 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74767 files and directories currently installed.) 331s Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... 331s Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... 332s Setting up libnettle8t64:arm64 (3.9.1-2.2) ... 333s dpkg: libarchive13:arm64: dependency problems, but removing anyway as you requested: 333s fwupd depends on libarchive13 (>= 3.2.1). 333s 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 333s Removing libarchive13:arm64 (3.7.2-1ubuntu2) ... 333s Selecting previously unselected package libarchive13t64:arm64. 333s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 333s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu1_arm64.deb ... 333s Unpacking libarchive13t64:arm64 (3.7.2-1.1ubuntu1) ... 334s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 334s wget depends on libpsl5 (>= 0.16.0). 334s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 334s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 334s 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 334s Removing libpsl5:arm64 (0.21.2-1build1) ... 334s Selecting previously unselected package libpsl5t64:arm64. 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74771 files and directories currently installed.) 334s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 334s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 334s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 334s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 334s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 334s Selecting previously unselected package libcurl4t64:arm64. 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74772 files and directories currently installed.) 334s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 334s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 334s dpkg: libuv1:arm64: dependency problems, but removing anyway as you requested: 334s bind9-libs:arm64 depends on libuv1 (>= 1.40.0). 334s 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74778 files and directories currently installed.) 334s Removing libuv1:arm64 (1.48.0-1) ... 334s Selecting previously unselected package libuv1t64:arm64. 334s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74773 files and directories currently installed.) 334s Preparing to unpack .../00-libuv1t64_1.48.0-1.1_arm64.deb ... 334s Unpacking libuv1t64:arm64 (1.48.0-1.1) ... 334s Selecting previously unselected package libjsoncpp25:arm64. 334s Preparing to unpack .../01-libjsoncpp25_1.9.5-6_arm64.deb ... 334s Unpacking libjsoncpp25:arm64 (1.9.5-6) ... 334s Selecting previously unselected package librhash0:arm64. 334s Preparing to unpack .../02-librhash0_1.4.3-3_arm64.deb ... 334s Unpacking librhash0:arm64 (1.4.3-3) ... 334s Selecting previously unselected package cmake-data. 334s Preparing to unpack .../03-cmake-data_3.28.3-1build5_all.deb ... 334s Unpacking cmake-data (3.28.3-1build5) ... 335s Selecting previously unselected package cmake. 335s Preparing to unpack .../04-cmake_3.28.3-1build5_arm64.deb ... 335s Unpacking cmake (3.28.3-1build5) ... 335s Selecting previously unselected package libisl23:arm64. 335s Preparing to unpack .../05-libisl23_0.26-3_arm64.deb ... 335s Unpacking libisl23:arm64 (0.26-3) ... 335s Selecting previously unselected package libmpc3:arm64. 335s Preparing to unpack .../06-libmpc3_1.3.1-1_arm64.deb ... 335s Unpacking libmpc3:arm64 (1.3.1-1) ... 335s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 335s Preparing to unpack .../07-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 335s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 335s Selecting previously unselected package cpp-13. 335s Preparing to unpack .../08-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 335s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 335s Selecting previously unselected package cpp-aarch64-linux-gnu. 335s Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 335s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 335s Selecting previously unselected package cpp. 335s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 335s Unpacking cpp (4:13.2.0-7ubuntu1) ... 335s Selecting previously unselected package libcc1-0:arm64. 335s Preparing to unpack .../11-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libgomp1:arm64. 335s Preparing to unpack .../12-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libitm1:arm64. 335s Preparing to unpack .../13-libitm1_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libatomic1:arm64. 335s Preparing to unpack .../14-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package libasan8:arm64. 335s Preparing to unpack .../15-libasan8_14-20240303-1ubuntu1_arm64.deb ... 335s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 335s Selecting previously unselected package liblsan0:arm64. 336s Preparing to unpack .../16-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 336s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 336s Selecting previously unselected package libtsan2:arm64. 336s Preparing to unpack .../17-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 336s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 336s Selecting previously unselected package libubsan1:arm64. 336s Preparing to unpack .../18-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 336s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 336s Selecting previously unselected package libhwasan0:arm64. 336s Preparing to unpack .../19-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 336s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 336s Selecting previously unselected package libgcc-13-dev:arm64. 336s Preparing to unpack .../20-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 336s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 336s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 336s Preparing to unpack .../21-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 336s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 336s Selecting previously unselected package gcc-13. 336s Preparing to unpack .../22-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 336s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 336s Selecting previously unselected package gcc-aarch64-linux-gnu. 336s Preparing to unpack .../23-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 336s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 336s Selecting previously unselected package gcc. 336s Preparing to unpack .../24-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 336s Unpacking gcc (4:13.2.0-7ubuntu1) ... 336s Selecting previously unselected package libc-dev-bin. 337s Preparing to unpack .../25-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 337s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 337s Selecting previously unselected package linux-libc-dev:arm64. 337s Preparing to unpack .../26-linux-libc-dev_6.8.0-11.11_arm64.deb ... 337s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 337s Selecting previously unselected package libcrypt-dev:arm64. 337s Preparing to unpack .../27-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 337s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 337s Selecting previously unselected package libtirpc-dev:arm64. 337s Preparing to unpack .../28-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 337s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 337s Selecting previously unselected package libnsl-dev:arm64. 337s Preparing to unpack .../29-libnsl-dev_1.3.0-3_arm64.deb ... 337s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 337s Selecting previously unselected package rpcsvc-proto. 337s Preparing to unpack .../30-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 337s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 337s Selecting previously unselected package libc6-dev:arm64. 337s Preparing to unpack .../31-libc6-dev_2.39-0ubuntu2_arm64.deb ... 337s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 337s Selecting previously unselected package libstdc++-13-dev:arm64. 337s Preparing to unpack .../32-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 337s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 337s Selecting previously unselected package g++-13-aarch64-linux-gnu. 337s Preparing to unpack .../33-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 337s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 337s Selecting previously unselected package g++-13. 337s Preparing to unpack .../34-g++-13_13.2.0-17ubuntu2_arm64.deb ... 337s Unpacking g++-13 (13.2.0-17ubuntu2) ... 337s Selecting previously unselected package g++-aarch64-linux-gnu. 337s Preparing to unpack .../35-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 337s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 337s Selecting previously unselected package g++. 337s Preparing to unpack .../36-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 337s Unpacking g++ (4:13.2.0-7ubuntu1) ... 337s Selecting previously unselected package googletest. 337s Preparing to unpack .../37-googletest_1.14.0-1_all.deb ... 337s Unpacking googletest (1.14.0-1) ... 338s Selecting previously unselected package libbz2-dev:arm64. 338s Preparing to unpack .../38-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 338s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 338s Selecting previously unselected package rapidjson-dev. 338s Preparing to unpack .../39-rapidjson-dev_1.1.0+dfsg2-7.1_all.deb ... 338s Unpacking rapidjson-dev (1.1.0+dfsg2-7.1) ... 338s Selecting previously unselected package libcereal-dev. 338s Preparing to unpack .../40-libcereal-dev_1.3.2+dfsg-5_arm64.deb ... 338s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 338s Selecting previously unselected package libgtest-dev:arm64. 338s Preparing to unpack .../41-libgtest-dev_1.14.0-1_arm64.deb ... 338s Unpacking libgtest-dev:arm64 (1.14.0-1) ... 338s Selecting previously unselected package libpkgconf3:arm64. 338s Preparing to unpack .../42-libpkgconf3_1.8.1-2_arm64.deb ... 338s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 338s Selecting previously unselected package zlib1g-dev:arm64. 338s Preparing to unpack .../43-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 338s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 338s Selecting previously unselected package libseqan3-dev. 338s Preparing to unpack .../44-libseqan3-dev_3.3.0+ds-1_all.deb ... 338s Unpacking libseqan3-dev (3.3.0+ds-1) ... 338s Selecting previously unselected package libsimde-dev. 338s Preparing to unpack .../45-libsimde-dev_0.7.2-6_all.deb ... 338s Unpacking libsimde-dev (0.7.2-6) ... 338s Selecting previously unselected package libxxhash-dev:arm64. 338s Preparing to unpack .../46-libxxhash-dev_0.8.2-2_arm64.deb ... 338s Unpacking libxxhash-dev:arm64 (0.8.2-2) ... 338s Selecting previously unselected package libyaml-cpp0.8:arm64. 338s Preparing to unpack .../47-libyaml-cpp0.8_0.8.0+dfsg-6_arm64.deb ... 338s Unpacking libyaml-cpp0.8:arm64 (0.8.0+dfsg-6) ... 338s Selecting previously unselected package libyaml-cpp-dev:arm64. 338s Preparing to unpack .../48-libyaml-cpp-dev_0.8.0+dfsg-6_arm64.deb ... 338s Unpacking libyaml-cpp-dev:arm64 (0.8.0+dfsg-6) ... 338s Selecting previously unselected package pkgconf-bin. 338s Preparing to unpack .../49-pkgconf-bin_1.8.1-2_arm64.deb ... 338s Unpacking pkgconf-bin (1.8.1-2) ... 338s Selecting previously unselected package pkgconf:arm64. 338s Preparing to unpack .../50-pkgconf_1.8.1-2_arm64.deb ... 338s Unpacking pkgconf:arm64 (1.8.1-2) ... 338s Selecting previously unselected package pkg-config:arm64. 338s Preparing to unpack .../51-pkg-config_1.8.1-2_arm64.deb ... 338s Unpacking pkg-config:arm64 (1.8.1-2) ... 338s Selecting previously unselected package seqan-raptor. 338s Preparing to unpack .../52-seqan-raptor_3.0.1+ds-5_arm64.deb ... 338s Unpacking seqan-raptor (3.0.1+ds-5) ... 338s Selecting previously unselected package seqan-raptor-doc. 338s Preparing to unpack .../53-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 338s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 338s Selecting previously unselected package autopkgtest-satdep. 338s Preparing to unpack .../54-2-autopkgtest-satdep.deb ... 338s Unpacking autopkgtest-satdep (0) ... 338s Setting up libsimde-dev (0.7.2-6) ... 338s Setting up libyaml-cpp0.8:arm64 (0.8.0+dfsg-6) ... 338s Setting up libuv1t64:arm64 (1.48.0-1.1) ... 338s Setting up libyaml-cpp-dev:arm64 (0.8.0+dfsg-6) ... 338s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 338s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 338s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 338s Setting up googletest (1.14.0-1) ... 338s Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... 338s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 338s Setting up libpkgconf3:arm64 (1.8.1-2) ... 338s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 338s Setting up libmpc3:arm64 (1.3.1-1) ... 338s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 338s Setting up libjsoncpp25:arm64 (1.9.5-6) ... 338s Setting up pkgconf-bin (1.8.1-2) ... 338s Setting up libxxhash-dev:arm64 (0.8.2-2) ... 338s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 338s Setting up libnsl-dev:arm64 (1.3.0-3) ... 338s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 338s Setting up librhash0:arm64 (1.4.3-3) ... 338s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 338s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 338s Setting up cmake-data (3.28.3-1build5) ... 338s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 338s Setting up libisl23:arm64 (0.26-3) ... 338s Setting up seqan-raptor (3.0.1+ds-5) ... 338s Setting up libc-dev-bin (2.39-0ubuntu2) ... 338s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 338s Setting up libarchive13t64:arm64 (3.7.2-1.1ubuntu1) ... 338s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 338s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 338s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 338s Setting up libgtest-dev:arm64 (1.14.0-1) ... 338s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 338s Setting up libcereal-dev (1.3.2+dfsg-5) ... 338s Setting up pkgconf:arm64 (1.8.1-2) ... 338s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up pkg-config:arm64 (1.8.1-2) ... 338s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 338s Setting up cmake (3.28.3-1build5) ... 338s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 338s Setting up curl (8.5.0-2ubuntu7) ... 338s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 338s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 338s Setting up cpp-13 (13.2.0-17ubuntu2) ... 338s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up gcc-13 (13.2.0-17ubuntu2) ... 338s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 338s Setting up cpp (4:13.2.0-7ubuntu1) ... 338s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up g++-13 (13.2.0-17ubuntu2) ... 338s Setting up libseqan3-dev (3.3.0+ds-1) ... 338s Setting up gcc (4:13.2.0-7ubuntu1) ... 338s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up g++ (4:13.2.0-7ubuntu1) ... 338s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 338s Setting up autopkgtest-satdep (0) ... 338s Processing triggers for man-db (2.12.0-3) ... 339s Processing triggers for libc-bin (2.39-0ubuntu2) ... 343s (Reading database ... 83189 files and directories currently installed.) 343s Removing autopkgtest-satdep (0) ... 345s autopkgtest [11:24:55]: test run-unit-test: [----------------------- 346s + pkg=seqan-raptor 346s + export LC_ALL=C.UTF-8 346s + LC_ALL=C.UTF-8 346s + '[' /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp = '' ']' 346s + cp -r CHANGELOG.md CMakeLists.txt CODE_OF_CONDUCT.md INSTALL.md LICENSE.md README.md build_system debian doc include lib src test util workflow /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp 346s + export 'CXXFLAGS=-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/' 346s + CXXFLAGS='-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/' 346s + cd /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp 346s + patch -p1 346s patching file test/raptor-test.cmake 346s + cd /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/test/unit 346s + cmake -DRAPTOR_SUBMODULES_DIR=/tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/test/unit/../../lib -DRAPTOR_NATIVE_BUILD=OFF . 347s -- The CXX compiler identification is GNU 13.2.0 347s -- The C compiler identification is GNU 13.2.0 347s -- Detecting CXX compiler ABI info 348s -- Detecting CXX compiler ABI info - done 348s -- Check for working CXX compiler: /usr/bin/c++ - skipped 348s -- Detecting CXX compile features 348s -- Detecting CXX compile features - done 348s -- Detecting C compiler ABI info 348s -- Detecting C compiler ABI info - done 348s -- Check for working C compiler: /usr/bin/cc - skipped 348s -- Detecting C compile features 348s -- Detecting C compile features - done 348s -- Finding RAPTOR and checking requirements: 348s -- RAPTOR include dir found: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include 348s -- Detected as running from a repository checkout… 348s -- …adding submodule include: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/chopper/include 348s -- …adding submodule include: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/robin-hood-hashing/src/include 348s -- …adding submodule include: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/sharg-parser/include 348s -- …adding submodule include: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/sharg-parser/test/include 348s -- …adding submodule include: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include 348s -- C++ Standard-20 support: via -std=c++20 349s -- OpenMP Support: via -fopenmp 349s -- SIMD-OpenMP Support: via -fopenmp-simd 349s -- Suppressing GCC 4 warnings: via -Wno-psabi 349s -- Optimize build: disabled 350s -- Link Time Optimization: enabled 350s -- Binary-stripping: via -s 350s -- Thread support: builtin 350s -- Optional dependency: ZLIB-1.3 found 350s -- Optional dependency: BZip2-1.0.8 found 350s -- Optional dependency: libexecinfo found 350s -- Found Raptor: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include 350s -- Finding program ccache 350s -- Finding program ccache - Failed 353s -- You can run `make` to build the application. 353s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 353s -- Checking for module 'libxxhash' 353s -- Found libxxhash, version 0.8.2 354s -- Test dependency: Google Test 1.14.0 found. 354s -- Configuring done (7.4s) 354s -- Generating done (0.1s) 354s -- Build files have been written to: /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/test/unit 354s + make 354s [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o 374s [ 2%] Linking CXX static library ../../lib/libraptor_upgrade.a 374s [ 2%] Built target raptor_upgrade 374s [ 2%] Built target xxhash_project 374s [ 3%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o 384s [ 5%] Linking CXX static library ../../../lib/libchopper_layout_lib.a 384s [ 5%] Built target chopper_layout_lib 384s [ 6%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_line.cpp.o 385s [ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o 409s [ 8%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o 419s [ 10%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o 433s [ 11%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o 450s [ 12%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o 474s [ 13%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o 503s [ 15%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o 528s [ 16%] Linking CXX static library ../../lib/libraptor_argument_parsing.a 528s [ 16%] Built target raptor_argument_parsing 528s [ 17%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o 537s [ 18%] Linking CXX static library ../../lib/libraptor_prepare.a 537s [ 18%] Built target raptor_prepare 537s [ 20%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o 550s [ 21%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o 559s [ 22%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o 564s [ 24%] Linking CXX static library ../../lib/libraptor_build.a 564s [ 24%] Built target raptor_build 564s [ 25%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o 567s [ 26%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o 568s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 568s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 568s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:13: 568s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 568s 20 | : public T, public std::iterator { 568s | ^~~~~~~~ 568s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 568s from /usr/include/c++/13/vector:62, 568s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 568s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 568s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 568s 127 | struct _GLIBCXX17_DEPRECATED iterator 568s | ^~~~~~~~ 570s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 570s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:16: 570s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 570s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 570s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 570s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 570s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 570s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 570s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 570s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 570s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574s [ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o 583s [ 29%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o 584s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 584s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 584s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:13: 584s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 584s 20 | : public T, public std::iterator { 584s | ^~~~~~~~ 584s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 584s from /usr/include/c++/13/vector:62, 584s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 584s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 584s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 584s 127 | struct _GLIBCXX17_DEPRECATED iterator 584s | ^~~~~~~~ 587s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 587s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:16: 587s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 587s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 587s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 587s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 587s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 587s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 587s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 587s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 587s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588s [ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o 589s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 589s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 589s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: 589s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 589s 20 | : public T, public std::iterator { 589s | ^~~~~~~~ 589s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 589s from /usr/include/c++/13/vector:62, 589s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 589s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 589s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 589s 127 | struct _GLIBCXX17_DEPRECATED iterator 589s | ^~~~~~~~ 592s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 592s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: 592s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 592s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 592s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 592s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 592s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 592s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 592s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 592s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 592s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594s [ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o 595s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 595s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 595s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:13: 595s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 595s 20 | : public T, public std::iterator { 595s | ^~~~~~~~ 595s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 595s from /usr/include/c++/13/vector:62, 595s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 595s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 595s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 595s 127 | struct _GLIBCXX17_DEPRECATED iterator 595s | ^~~~~~~~ 597s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 597s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:16: 597s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 597s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 597s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 597s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 597s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 597s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 597s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 597s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 597s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600s [ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o 610s [ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o 611s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 611s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 611s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:13: 611s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 611s 20 | : public T, public std::iterator { 611s | ^~~~~~~~ 611s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 611s from /usr/include/c++/13/vector:62, 611s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 611s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 611s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 611s 127 | struct _GLIBCXX17_DEPRECATED iterator 611s | ^~~~~~~~ 614s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/hierarchical_build.hpp:18, 614s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:17: 614s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 614s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 614s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 614s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 614s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 614s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 614s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 614s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 614s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616s [ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o 617s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 617s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 617s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:17: 617s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 617s 20 | : public T, public std::iterator { 617s | ^~~~~~~~ 617s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 617s from /usr/include/c++/13/algorithm:60, 617s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:13: 617s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 617s 127 | struct _GLIBCXX17_DEPRECATED iterator 617s | ^~~~~~~~ 618s [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o 619s [ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o 620s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 620s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 620s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:13: 620s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 620s 20 | : public T, public std::iterator { 620s | ^~~~~~~~ 620s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 620s from /usr/include/c++/13/vector:62, 620s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 620s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 620s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 620s 127 | struct _GLIBCXX17_DEPRECATED iterator 620s | ^~~~~~~~ 622s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, 622s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:17: 622s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 622s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 622s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 622s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 622s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 622s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 622s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 622s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 622s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625s [ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o 627s [ 40%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o 628s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 628s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 628s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:13: 628s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 628s 20 | : public T, public std::iterator { 628s | ^~~~~~~~ 628s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 628s from /usr/include/c++/13/vector:62, 628s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 628s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 628s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 628s 127 | struct _GLIBCXX17_DEPRECATED iterator 628s | ^~~~~~~~ 631s In file included from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/update_user_bins.hpp:15, 631s from /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:15: 631s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 631s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 631s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 631s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 631s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 631s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 631s /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 631s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 631s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633s [ 41%] Linking CXX static library ../../../lib/libraptor_build_hibf.a 633s [ 41%] Built target raptor_build_hibf 633s [ 43%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o 659s [ 44%] Linking CXX static library ../../lib/libraptor_layout.a 659s [ 44%] Built target raptor_layout 659s [ 45%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o 662s [ 46%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o 677s [ 48%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o 691s [ 49%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o 706s [ 50%] Linking CXX static library ../../lib/libraptor_search.a 706s [ 50%] Built target raptor_search 706s [ 51%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o 707s [ 53%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o 707s [ 54%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o 710s [ 55%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o 710s [ 56%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o 712s [ 58%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o 715s [ 59%] Linking CXX static library ../../lib/libraptor_threshold.a 715s [ 59%] Built target raptor_threshold 715s [ 60%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o 735s [ 62%] Linking CXX executable ../bin/raptor 755s [ 62%] Built target raptor 755s [ 63%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o 811s [ 64%] Linking CXX executable ../../../bin/chopper 811s [ 64%] Built target chopper 811s [ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o 814s [ 67%] Linking CXX executable issue_142 815s [ 67%] Built target issue_142 815s [ 68%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o 816s [ 69%] Linking CXX executable memory_usage 818s [ 69%] Built target memory_usage 818s [ 70%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o 840s [ 72%] Linking CXX executable validate_shape 846s [ 72%] Built target validate_shape 846s [ 73%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o 853s [ 74%] Linking CXX executable options_test 854s [ 74%] Built target options_test 854s [ 75%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o 860s [ 77%] Linking CXX executable build_hibf_chopper_test 862s [ 77%] Built target build_hibf_chopper_test 862s [ 78%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o 870s [ 79%] Linking CXX executable build_hibf_test 873s [ 79%] Built target build_hibf_test 873s [ 81%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o 881s [ 82%] Linking CXX executable build_ibf_compressed_test 885s [ 82%] Built target build_ibf_compressed_test 885s [ 83%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o 891s [ 84%] Linking CXX executable build_ibf_partitioned_test 894s [ 84%] Built target build_ibf_partitioned_test 894s [ 86%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o 903s [ 87%] Linking CXX executable build_ibf_test 906s [ 87%] Built target build_ibf_test 906s [ 88%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o 912s [ 89%] Linking CXX executable search_hibf_test 915s [ 89%] Built target search_hibf_test 915s [ 91%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o 924s [ 92%] Linking CXX executable search_hibf_preprocessing_test 927s [ 92%] Built target search_hibf_preprocessing_test 927s [ 93%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o 936s [ 94%] Linking CXX executable search_ibf_preprocessing_test 938s [ 94%] Built target search_ibf_preprocessing_test 938s [ 96%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o 945s [ 97%] Linking CXX executable search_ibf_test 948s [ 97%] Built target search_ibf_test 948s [ 98%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o 957s [100%] Linking CXX executable upgrade_test 959s [100%] Built target upgrade_test 959s + find . -name raptor -delete 959s + ctest . 959s Test project /tmp/autopkgtest.xKu7Bo/autopkgtest_tmp/test/unit 959s Start 1: api/issue_142 959s 1/14 Test #1: api/issue_142 ............................... Passed 0.41 sec 959s Start 2: api/memory_usage 960s 2/14 Test #2: api/memory_usage ............................ Passed 0.39 sec 960s Start 3: api/validate_shape 960s 3/14 Test #3: api/validate_shape .......................... Passed 0.71 sec 960s Start 4: cli/argument_parsing/options_test 961s 4/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.73 sec 961s Start 5: cli/build/build_hibf_chopper_test 961s 5/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.23 sec 961s Start 6: cli/build/build_hibf_test 962s 6/14 Test #6: cli/build/build_hibf_test ................... Passed 0.53 sec 962s Start 7: cli/build/build_ibf_compressed_test 963s 7/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 0.91 sec 963s Start 8: cli/build/build_ibf_partitioned_test 964s 8/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 1.49 sec 964s Start 9: cli/build/build_ibf_test 965s 9/14 Test #9: cli/build/build_ibf_test .................... Passed 0.39 sec 965s Start 10: cli/search/search_hibf_test 965s 10/14 Test #10: cli/search/search_hibf_test ................. Passed 0.57 sec 965s Start 11: cli/search/search_hibf_preprocessing_test 967s 11/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 1.72 sec 967s Start 12: cli/search/search_ibf_preprocessing_test 969s 12/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 1.72 sec 969s Start 13: cli/search/search_ibf_test 969s 13/14 Test #13: cli/search/search_ibf_test .................. Passed 0.74 sec 969s Start 14: cli/upgrade/upgrade_test 970s 14/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.17 sec 970s 970s 100% tests passed, 0 tests failed out of 14 970s 970s Total Test time (real) = 10.73 sec 970s + find . -name raptor 970s autopkgtest [11:35:20]: test run-unit-test: -----------------------] 971s autopkgtest [11:35:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 971s run-unit-test PASS 971s autopkgtest [11:35:21]: @@@@@@@@@@@@@@@@@@@@ summary 971s cwl PASS 971s run-unit-test PASS 990s Creating nova instance adt-noble-arm64-seqan-raptor-20240316-111910-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)... 990s Creating nova instance adt-noble-arm64-seqan-raptor-20240316-111910-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...