0s autopkgtest [19:05:06]: starting date and time: 2024-03-26 19:05:06+0000 0s autopkgtest [19:05:06]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [19:05:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.89pcpcfz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed --apt-upgrade samtools --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 samtools/1.19.2-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-12.secgroup --name adt-noble-arm64-samtools-20240326-190506-juju-7f2275-prod-proposed-migration-environment-2-9b8490eb-e41e-46a7-bdc3-d8692093064b --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 213s autopkgtest [19:08:39]: testbed dpkg architecture: arm64 214s autopkgtest [19:08:40]: testbed apt version: 2.7.12 214s autopkgtest [19:08:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 215s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 215s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3947 kB] 215s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 215s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [55.4 kB] 215s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B] 215s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [715 kB] 215s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 215s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [43.0 kB] 215s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 215s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4304 kB] 216s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 216s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [71.0 kB] 216s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 221s Fetched 9769 kB in 2s (4658 kB/s) 221s Reading package lists... 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 225s Calculating upgrade... 226s The following packages will be upgraded: 226s psmisc 226s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 178 kB of archives. 226s After this operation, 28.7 kB disk space will be freed. 226s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 psmisc arm64 23.7-1 [178 kB] 227s Fetched 178 kB in 0s (480 kB/s) 227s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 227s Preparing to unpack .../psmisc_23.7-1_arm64.deb ... 227s Unpacking psmisc (23.7-1) over (23.6-2) ... 227s Setting up psmisc (23.7-1) ... 227s Processing triggers for man-db (2.12.0-3) ... 228s Reading package lists... 228s Building dependency tree... 228s Reading state information... 229s 0 upgraded, 0 newly installed, 0 to remove and 249 not upgraded. 230s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 230s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 230s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 230s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 232s Reading package lists... 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 233s Calculating upgrade... 234s The following packages were automatically installed and are no longer required: 234s libaio1 libnetplan0 python3-distutils python3-lib2to3 234s Use 'sudo apt autoremove' to remove them. 234s The following packages will be REMOVED: 234s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 234s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 234s libhogweed6 libmagic1 libnettle8 libnpth0 libnvme1 libparted2 libperl5.38 234s libpng16-16 libpsl5 libreadline8 libreiserfscore0 libssl3 libtirpc3 liburcu8 234s libuv1 234s The following NEW packages will be installed: 234s bpfcc-tools bpftrace fontconfig-config fonts-dejavu-core fonts-dejavu-mono 234s hwdata ieee-data libaio1t64 libapt-pkg6.0t64 libarchive13t64 libatm1t64 234s libbpfcc libc-dev-bin libc-devtools libc6-dev libclang-cpp18 libclang1-18 234s libcrypt-dev libcurl3t64-gnutls libcurl4t64 libdb5.3t64 libdeflate0 234s libdw1t64 libelf1t64 libext2fs2t64 libfontconfig1 libgd3 libgdbm-compat4t64 234s libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 234s libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libllvm18 libmagic1t64 libnetplan1 234s libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 libperl5.38t64 234s libpng16-16t64 libpsl5t64 libreadline8t64 libreiserfscore0t64 libsharpyuv0 234s libssl3t64 libtiff6 libtirpc3t64 libunwind8 liburcu8t64 libuv1t64 libwebp7 234s libxpm4 linux-headers-6.8.0-20 linux-headers-6.8.0-20-generic 234s linux-image-6.8.0-20-generic linux-libc-dev linux-modules-6.8.0-20-generic 234s linux-modules-extra-6.8.0-20-generic linux-tools-6.8.0-20 234s linux-tools-6.8.0-20-generic linux-tools-common manpages manpages-dev 234s python3-bpfcc python3-netaddr rpcsvc-proto ubuntu-kernel-accessories 234s xdg-user-dirs 234s The following packages will be upgraded: 234s apparmor apt apt-utils base-files bash bind9-dnsutils bind9-host bind9-libs 234s binutils binutils-aarch64-linux-gnu binutils-common bolt bsdextrautils 234s bsdutils btrfs-progs coreutils cryptsetup-bin curl dbus dbus-bin dbus-daemon 234s dbus-session-bus-common dbus-system-bus-common dbus-user-session dhcpcd-base 234s dirmngr dmsetup dpkg dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp 234s fwupd gawk gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 234s gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 234s groff-base grub-common grub2-common ibverbs-providers inetutils-telnet info 234s initramfs-tools initramfs-tools-bin initramfs-tools-core install-info 234s iproute2 jq keyboxd kmod kpartx krb5-locales libapparmor1 libaudit-common 234s libaudit1 libbinutils libblkid1 libblockdev-crypto3 libblockdev-fs3 234s libblockdev-loop3 libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 234s libblockdev-swap3 libblockdev-utils3 libblockdev3 libbpf1 libbrotli1 234s libcap-ng0 libcom-err2 libcryptsetup12 libctf-nobfd0 libctf0 libdbus-1-3 234s libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libevent-core-2.1-7 234s libexpat1 libfdisk1 libfido2-1 libfreetype6 libftdi1-2 libfwupd2 libgcc-s1 234s libgirepository-1.0-1 libglib2.0-data libgprofng0 libgssapi-krb5-2 234s libgudev-1.0-0 libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0 234s libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 234s libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc 234s libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2 234s libnss-systemd libpam-modules libpam-modules-bin libpam-runtime 234s libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0 234s libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib 234s libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal 234s libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1 234s libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1 234s libsemanage-common libsemanage2 libsframe1 libslang2 libsmartcols1 234s libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared libsystemd0 234s libtext-charwidth-perl libtext-iconv-perl libtirpc-common libudev1 234s libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1 234s linux-generic linux-headers-generic linux-headers-virtual 234s linux-image-generic linux-image-virtual linux-virtual logsave lshw lsof 234s man-db mokutil motd-news-config mount mtr-tiny multipath-tools 234s netplan-generator netplan.io openssh-client openssh-server 234s openssh-sftp-server openssl parted perl perl-base perl-modules-5.38 234s pinentry-curses plymouth plymouth-theme-ubuntu-text procps python-apt-common 234s python3 python3-apt python3-cryptography python3-dbus python3-distutils 234s python3-gdbm python3-gi python3-lib2to3 python3-minimal python3-netplan 234s python3-pkg-resources python3-pyrsistent python3-setuptools 234s python3-typing-extensions python3-yaml python3.11 python3.11-minimal 234s python3.12 python3.12-minimal readline-common rsync rsyslog sbsigntool 234s shared-mime-info sudo systemd systemd-dev systemd-resolved systemd-sysv 234s systemd-timesyncd tcpdump telnet tnftp u-boot-tools ubuntu-pro-client 234s ubuntu-pro-client-l10n udev udisks2 usb.ids util-linux uuid-runtime 234s vim-common vim-tiny wget xxd xz-utils zlib1g 234s 249 upgraded, 74 newly installed, 28 to remove and 0 not upgraded. 234s Need to get 401 MB of archives. 234s After this operation, 618 MB of additional disk space will be used. 234s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 motd-news-config all 13ubuntu8 [5098 B] 234s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 base-files arm64 13ubuntu8 [74.4 kB] 234s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bash arm64 5.2.21-2ubuntu3 [780 kB] 234s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bsdutils arm64 1:2.39.3-9ubuntu2 [97.4 kB] 235s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libbrotli1 arm64 1.1.0-2build1 [339 kB] 235s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgssapi-krb5-2 arm64 1.20.1-6ubuntu1 [141 kB] 235s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libkrb5-3 arm64 1.20.1-6ubuntu1 [349 kB] 235s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libkrb5support0 arm64 1.20.1-6ubuntu1 [33.8 kB] 235s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libk5crypto3 arm64 1.20.1-6ubuntu1 [85.9 kB] 235s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcom-err2 arm64 1.47.0-2.4~exp1ubuntu2 [22.3 kB] 235s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu1 [61.7 kB] 235s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build6 [57.8 kB] 235s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 udisks2 arm64 2.10.1-6 [291 kB] 235s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudisks2-0 arm64 2.10.1-6 [172 kB] 235s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblkid1 arm64 2.39.3-9ubuntu2 [122 kB] 235s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblzma5 arm64 5.6.0-0.2 [129 kB] 235s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 kmod arm64 31+20240202-2ubuntu4 [101 kB] 235s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libkmod2 arm64 31+20240202-2ubuntu4 [51.6 kB] 235s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-dev all 255.4-1ubuntu5 [103 kB] 235s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-timesyncd arm64 255.4-1ubuntu5 [34.8 kB] 235s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 235s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libaudit-common all 1:3.1.2-2.1 [5674 B] 235s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcap-ng0 arm64 0.8.4-2build1 [14.8 kB] 235s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libaudit1 arm64 1:3.1.2-2.1 [47.5 kB] 235s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam0g arm64 1.5.3-5ubuntu3 [67.7 kB] 235s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libselinux1 arm64 3.5-2ubuntu1 [79.8 kB] 235s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu8 [332 kB] 235s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu8 [222 kB] 235s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 235s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 wget arm64 1.21.4-1ubuntu2 [330 kB] 235s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 u-boot-tools arm64 2024.01+dfsg-1ubuntu3 [294 kB] 235s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 tnftp arm64 20230507-2build1 [101 kB] 235s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 tcpdump arm64 4.99.4-3ubuntu2 [473 kB] 235s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd-shared arm64 255.4-1ubuntu5 [2016 kB] 235s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-resolved arm64 255.4-1ubuntu5 [291 kB] 235s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 sudo arm64 1.9.15p5-3ubuntu3 [928 kB] 235s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 sbsigntool arm64 0.9.4-3.1ubuntu5 [50.8 kB] 235s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 rsync arm64 3.2.7-1build1 [427 kB] 235s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-cryptography arm64 41.0.7-4build2 [772 kB] 235s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 235s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssh-sftp-server arm64 1:9.6p1-3ubuntu11 [36.8 kB] 235s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssh-client arm64 1:9.6p1-3ubuntu11 [884 kB] 235s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssh-server arm64 1:9.6p1-3ubuntu11 [501 kB] 235s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 mokutil arm64 0.6.0-2build1 [27.1 kB] 235s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssh-4 arm64 0.10.6-2build1 [190 kB] 235s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsasl2-modules arm64 2.1.28+dfsg1-5ubuntu1 [69.3 kB] 235s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12 arm64 3.12.2-4build3 [645 kB] 235s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.12-minimal arm64 3.12.2-4build3 [2188 kB] 235s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-minimal arm64 3.12.2-4build3 [829 kB] 235s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libparted2t64 arm64 3.6-3.1build2 [152 kB] 235s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 parted arm64 3.6-3.1build2 [42.4 kB] 235s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.11 arm64 3.11.8-1build4 [589 kB] 235s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3.11-minimal arm64 3.11.8-1build4 [2049 kB] 235s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.11-minimal arm64 3.11.8-1build4 [838 kB] 235s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.11-stdlib arm64 3.11.8-1build4 [1902 kB] 235s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 shared-mime-info arm64 2.4-1build1 [471 kB] 235s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-girepository-2.0 arm64 1.79.1-1ubuntu6 [24.7 kB] 235s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 235s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgirepository-1.0-1 arm64 1.79.1-1ubuntu6 [80.3 kB] 235s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-gi arm64 3.47.0-3build1 [233 kB] 235s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-dbus arm64 1.3.2-5build2 [99.5 kB] 235s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnetplan1 arm64 1.0-1 [117 kB] 235s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-netplan arm64 1.0-1 [21.5 kB] 235s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 netplan-generator arm64 1.0-1 [58.8 kB] 236s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 initramfs-tools-bin arm64 0.142ubuntu23 [20.6 kB] 236s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 236s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 initramfs-tools all 0.142ubuntu23 [9058 B] 236s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 netplan.io arm64 1.0-1 [65.4 kB] 236s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxmlb2 arm64 0.3.15-1build1 [67.7 kB] 236s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgpgme11t64 arm64 1.18.0-4.1ubuntu3 [136 kB] 236s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libvolume-key1 arm64 0.3.12-7build1 [40.6 kB] 236s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libqrtr-glib0 arm64 1.2.2-1ubuntu3 [16.8 kB] 236s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libqmi-glib5 arm64 1.35.2-0ubuntu1 [849 kB] 236s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libqmi-proxy arm64 1.35.2-0ubuntu1 [6072 B] 236s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpolkit-agent-1-0 arm64 124-1ubuntu1 [16.9 kB] 236s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpolkit-gobject-1-0 arm64 124-1ubuntu1 [48.6 kB] 236s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmm-glib0 arm64 1.23.4-0ubuntu1 [250 kB] 236s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmbim-glib4 arm64 1.31.2-0ubuntu2 [220 kB] 236s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmbim-proxy arm64 1.31.2-0ubuntu2 [6120 B] 236s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 236s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjson-glib-1.0-0 arm64 1.8.0-2build1 [65.2 kB] 236s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgusb2 arm64 0.4.8-1build1 [37.7 kB] 236s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgudev-1.0-0 arm64 1:238-3ubuntu2 [14.9 kB] 236s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libarchive13t64 arm64 3.7.2-1.1ubuntu2 [376 kB] 236s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 fwupd arm64 1.9.15-2 [4450 kB] 236s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl3t64-gnutls arm64 8.5.0-2ubuntu8 [327 kB] 236s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfwupd2 arm64 1.9.15-2 [128 kB] 236s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev3 arm64 3.1.0-1build1 [51.0 kB] 236s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-utils3 arm64 3.1.0-1build1 [18.3 kB] 236s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-swap3 arm64 3.1.0-1build1 [7886 B] 236s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-part3 arm64 3.1.0-1build1 [14.7 kB] 236s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnvme1t64 arm64 1.8-3 [76.2 kB] 236s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-nvme3 arm64 3.1.0-1build1 [17.1 kB] 236s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-mdraid3 arm64 3.1.0-1build1 [12.7 kB] 236s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-loop3 arm64 3.1.0-1build1 [7200 B] 236s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 236s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 logsave arm64 1.47.0-2.4~exp1ubuntu2 [22.1 kB] 236s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libext2fs2t64 arm64 1.47.0-2.4~exp1ubuntu2 [225 kB] 236s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 e2fsprogs arm64 1.47.0-2.4~exp1ubuntu2 [594 kB] 236s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libreiserfscore0t64 arm64 1:3.6.27-7.1 [76.6 kB] 236s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 btrfs-progs arm64 6.6.3-1.1build1 [964 kB] 236s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-fs3 arm64 3.1.0-1build1 [35.9 kB] 236s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libblockdev-crypto3 arm64 3.1.0-1build1 [20.2 kB] 236s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bolt arm64 0.9.6-2build1 [143 kB] 236s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 237s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjcat1 arm64 0.2.0-2build2 [33.6 kB] 237s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libldap2 arm64 2.6.7+dfsg-1~exp1ubuntu6 [193 kB] 237s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ubuntu-pro-client-l10n arm64 31.2.2 [19.4 kB] 237s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ubuntu-pro-client arm64 31.2.2 [214 kB] 237s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gnupg-utils arm64 2.4.4-2ubuntu15 [106 kB] 237s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 keyboxd arm64 2.4.4-2ubuntu15 [75.9 kB] 237s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libnpth0t64 arm64 1.6-3.1 [8076 B] 237s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gpgv arm64 2.4.4-2ubuntu15 [150 kB] 237s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gpg-wks-client arm64 2.4.4-2ubuntu15 [69.7 kB] 237s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gpg-agent arm64 2.4.4-2ubuntu15 [221 kB] 237s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gpg arm64 2.4.4-2ubuntu15 [548 kB] 237s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dirmngr arm64 2.4.4-2ubuntu15 [316 kB] 237s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gnupg all 2.4.4-2ubuntu15 [359 kB] 237s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-apt arm64 2.7.7 [167 kB] 237s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt-utils arm64 2.7.14 [205 kB] 237s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libapt-pkg6.0t64 arm64 2.7.14 [934 kB] 237s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnettle8t64 arm64 3.9.1-2.2 [192 kB] 237s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libhogweed6t64 arm64 3.9.1-2.2 [199 kB] 237s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgnutls30t64 arm64 3.8.3-1.1ubuntu2 [1042 kB] 237s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt arm64 2.7.14 [1337 kB] 237s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gpgconf arm64 2.4.4-2ubuntu15 [103 kB] 237s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gpgsm arm64 2.4.4-2ubuntu15 [225 kB] 237s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-4 [153 kB] 237s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gawk arm64 1:5.2.1-2build2 [447 kB] 237s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 fdisk arm64 2.39.3-9ubuntu2 [120 kB] 237s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3.12-stdlib arm64 3.12.2-4build3 [2001 kB] 237s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-base arm64 5.38.2-3.2 [1777 kB] 237s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 237s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-gdbm arm64 3.12.2-3ubuntu1.1 [18.8 kB] 237s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 man-db arm64 2.12.0-3build4 [1226 kB] 237s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm6t64 arm64 1.23-5.1 [34.3 kB] 237s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm-compat4t64 arm64 1.23-5.1 [6576 B] 237s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libperl5.38t64 arm64 5.38.2-3.2 [4771 kB] 237s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl arm64 5.38.2-3.2 [231 kB] 237s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-6 [732 kB] 237s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-5ubuntu1 [21.3 kB] 237s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-5ubuntu1 [54.7 kB] 237s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfido2-1 arm64 1.14.0-1build1 [82.5 kB] 237s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcryptsetup12 arm64 2:2.7.0-1ubuntu2 [262 kB] 237s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dhcpcd-base arm64 1:10.0.6-1ubuntu2 [211 kB] 237s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libuv1t64 arm64 1.48.0-1.1 [95.3 kB] 237s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bind9-host arm64 1:9.18.24-0ubuntu3 [50.2 kB] 237s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bind9-dnsutils arm64 1:9.18.24-0ubuntu3 [155 kB] 238s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bind9-libs arm64 1:9.18.24-0ubuntu3 [1197 kB] 238s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 238s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnss-systemd arm64 255.4-1ubuntu5 [154 kB] 238s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudev1 arm64 255.4-1ubuntu5 [173 kB] 238s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd arm64 255.4-1ubuntu5 [3403 kB] 238s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 udev arm64 255.4-1ubuntu5 [1852 kB] 238s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-sysv arm64 255.4-1ubuntu5 [11.9 kB] 238s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-systemd arm64 255.4-1ubuntu5 [232 kB] 238s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd0 arm64 255.4-1ubuntu5 [424 kB] 238s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-modules-bin arm64 1.5.3-5ubuntu3 [50.4 kB] 238s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-modules arm64 1.5.3-5ubuntu3 [278 kB] 238s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 238s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dbus-user-session arm64 1.14.10-4ubuntu2 [9960 B] 238s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libapparmor1 arm64 4.0.0-beta3-0ubuntu2 [49.9 kB] 238s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libexpat1 arm64 2.6.1-2 [76.0 kB] 238s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 238s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dbus-bin arm64 1.14.10-4ubuntu2 [38.8 kB] 238s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dbus arm64 1.14.10-4ubuntu2 [23.9 kB] 238s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dbus-daemon arm64 1.14.10-4ubuntu2 [115 kB] 238s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdbus-1-3 arm64 1.14.10-4ubuntu2 [210 kB] 238s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmount1 arm64 2.39.3-9ubuntu2 [133 kB] 238s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libseccomp2 arm64 2.5.5-1ubuntu2 [51.0 kB] 238s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdevmapper1.02.1 arm64 2:1.02.185-3ubuntu2 [128 kB] 238s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libuuid1 arm64 2.39.3-9ubuntu2 [35.1 kB] 238s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfdisk1 arm64 2.39.3-9ubuntu2 [142 kB] 238s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 mount arm64 2.39.3-9ubuntu2 [116 kB] 238s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsqlite3-0 arm64 3.45.1-1ubuntu1 [704 kB] 238s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gcc-14-base arm64 14-20240315-1ubuntu1 [47.0 kB] 238s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgcc-s1 arm64 14-20240315-1ubuntu1 [49.9 kB] 238s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libstdc++6 arm64 14-20240315-1ubuntu1 [748 kB] 238s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dpkg arm64 1.22.6ubuntu5 [1266 kB] 238s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-minimal arm64 3.12.2-0ubuntu1 [27.1 kB] 238s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3 arm64 3.12.2-0ubuntu1 [24.1 kB] 238s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpython3-stdlib arm64 3.12.2-0ubuntu1 [9802 B] 238s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsmartcols1 arm64 2.39.3-9ubuntu2 [64.1 kB] 238s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 bsdextrautils arm64 2.39.3-9ubuntu2 [71.5 kB] 238s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 groff-base arm64 1.23.0-3build1 [992 kB] 238s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 pinentry-curses arm64 1.2.1-3ubuntu4 [34.3 kB] 238s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-4 [56.4 kB] 238s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxml2 arm64 2.9.14+dfsg-1.3ubuntu2 [734 kB] 238s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libbpf1 arm64 1:1.3.0-2build1 [167 kB] 238s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libelf1t64 arm64 0.190-1.1build2 [57.9 kB] 238s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 238s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 lsof arm64 4.95.0-1build2 [245 kB] 238s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnsl2 arm64 1.3.0-3build2 [41.5 kB] 238s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 238s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 iproute2 arm64 6.1.0-1ubuntu5 [1121 kB] 238s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-yaml arm64 6.0.1-2build1 [113 kB] 238s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libusb-1.0-0 arm64 2:1.0.27-1 [54.1 kB] 238s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libprotobuf-c1 arm64 1.4.1-1ubuntu3 [20.7 kB] 238s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libnghttp2-14 arm64 1.59.0-1build1 [74.0 kB] 238s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libproc2-0 arm64 2:4.0.4-4ubuntu2 [58.5 kB] 238s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 procps arm64 2:4.0.4-4ubuntu2 [708 kB] 238s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 coreutils arm64 9.4-3ubuntu3 [1363 kB] 239s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 util-linux arm64 2.39.3-9ubuntu2 [1114 kB] 239s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 file arm64 1:5.45-3 [22.0 kB] 239s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic-mgc arm64 1:5.45-3 [307 kB] 239s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libmagic1t64 arm64 1:5.45-3 [85.7 kB] 239s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libplymouth5 arm64 24.004.60-1ubuntu6 [140 kB] 239s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfreetype6 arm64 2.13.2+dfsg-1build2 [393 kB] 239s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 239s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 multipath-tools arm64 0.9.4-5ubuntu6 [303 kB] 240s Get:211 http://ftpmaster.internal/ubuntu noble/main arm64 liburcu8t64 arm64 0.14.0-3.1 [63.1 kB] 240s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblocale-gettext-perl arm64 1.07-6ubuntu4 [15.3 kB] 240s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 uuid-runtime arm64 2.39.3-9ubuntu2 [32.5 kB] 240s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdebconfclient0 arm64 0.271ubuntu2 [11.2 kB] 240s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsemanage-common all 3.5-1build4 [10.1 kB] 240s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsemanage2 arm64 3.5-1build4 [90.8 kB] 240s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 install-info arm64 7.1-3build1 [61.4 kB] 240s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gcc-13-base arm64 13.2.0-21ubuntu1 [48.3 kB] 240s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libss2 arm64 1.47.0-2.4~exp1ubuntu2 [16.5 kB] 240s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dmsetup arm64 2:1.02.185-3ubuntu2 [74.5 kB] 240s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 eject arm64 2.39.3-9ubuntu2 [26.5 kB] 240s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] 240s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 240s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libslang2 arm64 2.3.3-3build1 [476 kB] 240s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtext-charwidth-perl arm64 0.04-11build2 [9368 B] 240s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtext-iconv-perl arm64 1.7-8build2 [13.1 kB] 240s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python-apt-common all 2.7.7 [19.8 kB] 240s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 240s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 240s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 rsyslog arm64 8.2312.0-3ubuntu7 [511 kB] 240s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 vim-tiny arm64 2:9.1.0016-1ubuntu6 [771 kB] 240s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 vim-common all 2:9.1.0016-1ubuntu6 [385 kB] 240s Get:233 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 240s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 xxd arm64 2:9.1.0016-1ubuntu6 [62.8 kB] 240s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apparmor arm64 4.0.0-beta3-0ubuntu2 [616 kB] 240s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ftp all 20230507-2build1 [4724 B] 240s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 inetutils-telnet arm64 2:2.5-3ubuntu3 [97.5 kB] 240s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 info arm64 7.1-3build1 [141 kB] 240s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxmuu1 arm64 2:1.1.3-3build1 [9252 B] 240s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 lshw arm64 02.19.git.2021.06.19.996aaad9c7-2build2 [302 kB] 240s Get:241 http://ftpmaster.internal/ubuntu noble/main arm64 manpages all 6.05.01-1 [1340 kB] 240s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 mtr-tiny arm64 0.95-1.1build1 [54.2 kB] 240s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 plymouth-theme-ubuntu-text arm64 24.004.60-1ubuntu6 [9802 B] 240s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 plymouth arm64 24.004.60-1ubuntu6 [135 kB] 240s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 telnet all 0.17+2.5-3ubuntu3 [3682 B] 240s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 usb.ids all 2024.03.18-1 [223 kB] 240s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 xz-utils arm64 5.6.0-0.2 [272 kB] 240s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgprofng0 arm64 2.42-4ubuntu1 [777 kB] 240s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libctf0 arm64 2.42-4ubuntu1 [95.7 kB] 240s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libctf-nobfd0 arm64 2.42-4ubuntu1 [99.8 kB] 240s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.42-4ubuntu1 [3294 kB] 240s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libbinutils arm64 2.42-4ubuntu1 [767 kB] 240s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils arm64 2.42-4ubuntu1 [18.1 kB] 240s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 binutils-common arm64 2.42-4ubuntu1 [239 kB] 240s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsframe1 arm64 2.42-4ubuntu1 [14.4 kB] 240s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libllvm18 arm64 1:18.1.2-1ubuntu2 [26.4 MB] 241s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libclang-cpp18 arm64 1:18.1.2-1ubuntu2 [13.2 MB] 242s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libbpfcc arm64 0.29.1+ds-1ubuntu4 [623 kB] 242s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 python3-bpfcc all 0.29.1+ds-1ubuntu4 [40.2 kB] 242s Get:260 http://ftpmaster.internal/ubuntu noble/main arm64 ieee-data all 20220827.1 [2113 kB] 242s Get:261 http://ftpmaster.internal/ubuntu noble/main arm64 python3-netaddr all 0.8.0-2ubuntu1 [319 kB] 242s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 bpfcc-tools all 0.29.1+ds-1ubuntu4 [687 kB] 242s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libclang1-18 arm64 1:18.1.2-1ubuntu2 [7530 kB] 242s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdw1t64 arm64 0.190-1.1build2 [258 kB] 242s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 bpftrace arm64 0.20.2-1ubuntu1 [932 kB] 242s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 cryptsetup-bin arm64 2:2.7.0-1ubuntu2 [210 kB] 242s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 dpkg-dev all 1.22.6ubuntu5 [1074 kB] 242s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdpkg-perl all 1.22.6ubuntu5 [269 kB] 242s Get:269 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 242s Get:270 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 242s Get:271 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu1 [37.4 kB] 242s Get:272 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 242s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 grub2-common arm64 2.12-1ubuntu5 [671 kB] 242s Get:274 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 grub-common arm64 2.12-1ubuntu5 [2174 kB] 242s Get:275 http://ftpmaster.internal/ubuntu noble/main arm64 hwdata all 0.379-1 [29.1 kB] 242s Get:276 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libibverbs1 arm64 50.0-2build1 [67.3 kB] 242s Get:277 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 ibverbs-providers arm64 50.0-2build1 [367 kB] 242s Get:278 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 jq arm64 1.7.1-3 [64.6 kB] 242s Get:279 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libjq1 arm64 1.7.1-3 [133 kB] 242s Get:280 http://ftpmaster.internal/ubuntu noble/main arm64 libaio1t64 arm64 0.3.113-6 [7312 B] 242s Get:281 http://ftpmaster.internal/ubuntu noble/main arm64 libatm1t64 arm64 1:2.5.1-5.1 [23.4 kB] 242s Get:282 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 242s Get:283 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu1 [142 kB] 243s Get:284 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 243s Get:285 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 243s Get:286 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 243s Get:287 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 243s Get:288 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 243s Get:289 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsharpyuv0 arm64 1.3.2-0.4build2 [14.5 kB] 243s Get:290 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libwebp7 arm64 1.3.2-0.4build2 [191 kB] 243s Get:291 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu1 [191 kB] 243s Get:292 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxpm4 arm64 1:3.5.17-1build1 [35.4 kB] 243s Get:293 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgd3 arm64 2.3.3-9ubuntu3 [121 kB] 243s Get:294 http://ftpmaster.internal/ubuntu noble/main arm64 libc-devtools arm64 2.39-0ubuntu6 [27.8 kB] 243s Get:295 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-libc-dev arm64 6.8.0-20.20 [1570 kB] 243s Get:296 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 243s Get:297 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 243s Get:298 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 243s Get:299 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-9build1 [89.6 kB] 243s Get:300 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libftdi1-2 arm64 1.5-6build4 [28.6 kB] 243s Get:301 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 243s Get:302 http://ftpmaster.internal/ubuntu noble/main arm64 libunwind8 arm64 1.6.2-3 [55.1 kB] 243s Get:303 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-modules-6.8.0-20-generic arm64 6.8.0-20.20 [85.8 MB] 246s Get:304 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-image-6.8.0-20-generic arm64 6.8.0-20.20 [17.9 MB] 247s Get:305 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-modules-extra-6.8.0-20-generic arm64 6.8.0-20.20 [122 MB] 251s Get:306 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-generic arm64 6.8.0-20.20+1 [1734 B] 251s Get:307 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-image-generic arm64 6.8.0-20.20+1 [9694 B] 251s Get:308 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-virtual arm64 6.8.0-20.20+1 [1680 B] 251s Get:309 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-image-virtual arm64 6.8.0-20.20+1 [9700 B] 251s Get:310 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-headers-virtual arm64 6.8.0-20.20+1 [1642 B] 251s Get:311 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 252s Get:312 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-headers-6.8.0-20-generic arm64 6.8.0-20.20 [3194 kB] 252s Get:313 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-headers-generic arm64 6.8.0-20.20+1 [9608 B] 252s Get:314 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-tools-common all 6.8.0-20.20 [437 kB] 252s Get:315 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-tools-6.8.0-20 arm64 6.8.0-20.20 [2667 kB] 252s Get:316 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-tools-6.8.0-20-generic arm64 6.8.0-20.20 [1722 B] 252s Get:317 http://ftpmaster.internal/ubuntu noble/main arm64 manpages-dev all 6.05.01-1 [2018 kB] 252s Get:318 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 252s Get:319 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 252s Get:320 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-pyrsistent arm64 0.20.0-1build1 [55.7 kB] 252s Get:321 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-typing-extensions all 4.10.0-1 [60.7 kB] 252s Get:322 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-kernel-accessories arm64 1.536build1 [10.5 kB] 252s Get:323 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 kpartx arm64 0.9.4-5ubuntu6 [31.3 kB] 253s Preconfiguring packages ... 254s Fetched 401 MB in 18s (22.0 MB/s) 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 254s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ... 254s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ... 254s Preparing to unpack .../base-files_13ubuntu8_arm64.deb ... 254s Unpacking base-files (13ubuntu8) over (13ubuntu7) ... 254s Setting up base-files (13ubuntu8) ... 255s motd-news.service is a disabled or a static unit not running, not starting it. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 255s Preparing to unpack .../bash_5.2.21-2ubuntu3_arm64.deb ... 255s Unpacking bash (5.2.21-2ubuntu3) over (5.2.21-2ubuntu2) ... 255s Setting up bash (5.2.21-2ubuntu3) ... 255s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 256s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_arm64.deb ... 256s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 256s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 256s Preparing to unpack .../0-libbrotli1_1.1.0-2build1_arm64.deb ... 256s Unpacking libbrotli1:arm64 (1.1.0-2build1) over (1.1.0-2) ... 256s Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6ubuntu1_arm64.deb ... 256s Unpacking libgssapi-krb5-2:arm64 (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 256s Preparing to unpack .../2-libkrb5-3_1.20.1-6ubuntu1_arm64.deb ... 256s Unpacking libkrb5-3:arm64 (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 256s Preparing to unpack .../3-libkrb5support0_1.20.1-6ubuntu1_arm64.deb ... 256s Unpacking libkrb5support0:arm64 (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 256s Preparing to unpack .../4-libk5crypto3_1.20.1-6ubuntu1_arm64.deb ... 256s Unpacking libk5crypto3:arm64 (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 256s Preparing to unpack .../5-libcom-err2_1.47.0-2.4~exp1ubuntu2_arm64.deb ... 256s Unpacking libcom-err2:arm64 (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 256s Preparing to unpack .../6-zlib1g_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 256s Unpacking zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 256s Setting up zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 256s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_arm64.deb ... 256s Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ... 256s Preparing to unpack .../udisks2_2.10.1-6_arm64.deb ... 256s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ... 256s Preparing to unpack .../libudisks2-0_2.10.1-6_arm64.deb ... 256s Unpacking libudisks2-0:arm64 (2.10.1-6) over (2.10.1-1ubuntu2) ... 256s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_arm64.deb ... 256s Unpacking libblkid1:arm64 (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 256s Setting up libblkid1:arm64 (2.39.3-9ubuntu2) ... 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 256s Preparing to unpack .../liblzma5_5.6.0-0.2_arm64.deb ... 256s Unpacking liblzma5:arm64 (5.6.0-0.2) over (5.4.5-0.3) ... 257s Setting up liblzma5:arm64 (5.6.0-0.2) ... 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 257s Preparing to unpack .../0-kmod_31+20240202-2ubuntu4_arm64.deb ... 257s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 257s Preparing to unpack .../1-libkmod2_31+20240202-2ubuntu4_arm64.deb ... 257s Unpacking libkmod2:arm64 (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 257s Preparing to unpack .../2-systemd-dev_255.4-1ubuntu5_all.deb ... 257s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 257s Preparing to unpack .../3-systemd-timesyncd_255.4-1ubuntu5_arm64.deb ... 257s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 257s Preparing to unpack .../4-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ... 257s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 257s Preparing to unpack .../5-libaudit-common_1%3a3.1.2-2.1_all.deb ... 257s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ... 257s Setting up libaudit-common (1:3.1.2-2.1) ... 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 257s Preparing to unpack .../libcap-ng0_0.8.4-2build1_arm64.deb ... 257s Unpacking libcap-ng0:arm64 (0.8.4-2build1) over (0.8.4-2) ... 257s Setting up libcap-ng0:arm64 (0.8.4-2build1) ... 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 257s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_arm64.deb ... 257s Unpacking libaudit1:arm64 (1:3.1.2-2.1) over (1:3.1.2-2) ... 257s Setting up libaudit1:arm64 (1:3.1.2-2.1) ... 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 257s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_arm64.deb ... 257s Unpacking libpam0g:arm64 (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 257s Setting up libpam0g:arm64 (1.5.3-5ubuntu3) ... 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 258s Preparing to unpack .../libselinux1_3.5-2ubuntu1_arm64.deb ... 258s Unpacking libselinux1:arm64 (3.5-2ubuntu1) over (3.5-2build1) ... 258s Setting up libselinux1:arm64 (3.5-2ubuntu1) ... 258s dpkg: libcurl4:arm64: dependency problems, but removing anyway as you requested: 258s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 258s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 258s Selecting previously unselected package libcurl4t64:arm64. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75903 files and directories currently installed.) 258s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_arm64.deb ... 258s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu8) ... 258s Preparing to unpack .../curl_8.5.0-2ubuntu8_arm64.deb ... 258s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ... 258s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 258s wget depends on libpsl5 (>= 0.16.0). 258s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75909 files and directories currently installed.) 258s Removing libpsl5:arm64 (0.21.2-1build1) ... 258s Selecting previously unselected package libpsl5t64:arm64. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75904 files and directories currently installed.) 258s Preparing to unpack .../00-libpsl5t64_0.21.2-1.1_arm64.deb ... 258s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 258s Preparing to unpack .../01-wget_1.21.4-1ubuntu2_arm64.deb ... 258s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ... 258s Preparing to unpack .../02-u-boot-tools_2024.01+dfsg-1ubuntu3_arm64.deb ... 258s Unpacking u-boot-tools (2024.01+dfsg-1ubuntu3) over (2024.01+dfsg-1ubuntu2) ... 258s Preparing to unpack .../03-tnftp_20230507-2build1_arm64.deb ... 258s Unpacking tnftp (20230507-2build1) over (20230507-2) ... 258s Preparing to unpack .../04-tcpdump_4.99.4-3ubuntu2_arm64.deb ... 259s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 259s Preparing to unpack .../05-libsystemd-shared_255.4-1ubuntu5_arm64.deb ... 259s Unpacking libsystemd-shared:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 259s Preparing to unpack .../06-systemd-resolved_255.4-1ubuntu5_arm64.deb ... 259s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 259s Preparing to unpack .../07-sudo_1.9.15p5-3ubuntu3_arm64.deb ... 259s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 259s Preparing to unpack .../08-sbsigntool_0.9.4-3.1ubuntu5_arm64.deb ... 259s Unpacking sbsigntool (0.9.4-3.1ubuntu5) over (0.9.4-3.1ubuntu4) ... 259s Preparing to unpack .../09-rsync_3.2.7-1build1_arm64.deb ... 259s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 259s Preparing to unpack .../10-python3-cryptography_41.0.7-4build2_arm64.deb ... 259s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 259s Preparing to unpack .../11-openssl_3.0.13-0ubuntu2_arm64.deb ... 259s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 259s Preparing to unpack .../12-openssh-sftp-server_1%3a9.6p1-3ubuntu11_arm64.deb ... 259s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 259s Preparing to unpack .../13-openssh-client_1%3a9.6p1-3ubuntu11_arm64.deb ... 259s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 260s Preparing to unpack .../14-openssh-server_1%3a9.6p1-3ubuntu11_arm64.deb ... 260s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 260s Preparing to unpack .../15-mokutil_0.6.0-2build1_arm64.deb ... 260s Unpacking mokutil (0.6.0-2build1) over (0.6.0-2) ... 260s Preparing to unpack .../16-libssh-4_0.10.6-2build1_arm64.deb ... 260s Unpacking libssh-4:arm64 (0.10.6-2build1) over (0.10.6-2) ... 260s Preparing to unpack .../17-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_arm64.deb ... 260s Unpacking libsasl2-modules:arm64 (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 260s Preparing to unpack .../18-python3.12_3.12.2-4build3_arm64.deb ... 260s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 260s Preparing to unpack .../19-python3.12-minimal_3.12.2-4build3_arm64.deb ... 260s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 260s Preparing to unpack .../20-libpython3.12-minimal_3.12.2-4build3_arm64.deb ... 260s Unpacking libpython3.12-minimal:arm64 (3.12.2-4build3) over (3.12.2-1) ... 261s dpkg: libparted2:arm64: dependency problems, but removing anyway as you requested: 261s parted depends on libparted2 (= 3.6-3). 261s 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75910 files and directories currently installed.) 261s Removing libparted2:arm64 (3.6-3) ... 261s Selecting previously unselected package libparted2t64:arm64. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75904 files and directories currently installed.) 261s Preparing to unpack .../00-libparted2t64_3.6-3.1build2_arm64.deb ... 261s Unpacking libparted2t64:arm64 (3.6-3.1build2) ... 261s Preparing to unpack .../01-parted_3.6-3.1build2_arm64.deb ... 261s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 261s Preparing to unpack .../02-python3.11_3.11.8-1build4_arm64.deb ... 261s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 261s Preparing to unpack .../03-python3.11-minimal_3.11.8-1build4_arm64.deb ... 261s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 261s Preparing to unpack .../04-libpython3.11-minimal_3.11.8-1build4_arm64.deb ... 261s Unpacking libpython3.11-minimal:arm64 (3.11.8-1build4) over (3.11.8-1) ... 261s Preparing to unpack .../05-libpython3.11-stdlib_3.11.8-1build4_arm64.deb ... 261s Unpacking libpython3.11-stdlib:arm64 (3.11.8-1build4) over (3.11.8-1) ... 262s Preparing to unpack .../06-shared-mime-info_2.4-1build1_arm64.deb ... 262s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 262s Preparing to unpack .../07-gir1.2-girepository-2.0_1.79.1-1ubuntu6_arm64.deb ... 262s Unpacking gir1.2-girepository-2.0:arm64 (1.79.1-1ubuntu6) over (1.79.1-1) ... 262s Preparing to unpack .../08-gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 262s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 262s Preparing to unpack .../09-libgirepository-1.0-1_1.79.1-1ubuntu6_arm64.deb ... 262s Unpacking libgirepository-1.0-1:arm64 (1.79.1-1ubuntu6) over (1.79.1-1) ... 262s Preparing to unpack .../10-python3-gi_3.47.0-3build1_arm64.deb ... 262s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 263s Preparing to unpack .../11-python3-dbus_1.3.2-5build2_arm64.deb ... 263s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 263s Selecting previously unselected package libnetplan1:arm64. 263s Preparing to unpack .../12-libnetplan1_1.0-1_arm64.deb ... 263s Unpacking libnetplan1:arm64 (1.0-1) ... 263s Preparing to unpack .../13-python3-netplan_1.0-1_arm64.deb ... 263s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 263s Preparing to unpack .../14-netplan-generator_1.0-1_arm64.deb ... 263s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 263s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 263s Preparing to unpack .../15-initramfs-tools-bin_0.142ubuntu23_arm64.deb ... 263s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 263s Preparing to unpack .../16-initramfs-tools-core_0.142ubuntu23_all.deb ... 263s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 263s Preparing to unpack .../17-initramfs-tools_0.142ubuntu23_all.deb ... 263s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 263s Preparing to unpack .../18-netplan.io_1.0-1_arm64.deb ... 263s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 263s Preparing to unpack .../19-libxmlb2_0.3.15-1build1_arm64.deb ... 263s Unpacking libxmlb2:arm64 (0.3.15-1build1) over (0.3.15-1) ... 263s dpkg: libgpgme11:arm64: dependency problems, but removing anyway as you requested: 263s libvolume-key1:arm64 depends on libgpgme11 (>= 1.4.1). 263s libjcat1:arm64 depends on libgpgme11 (>= 1.2.0). 263s 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 263s Removing libgpgme11:arm64 (1.18.0-4ubuntu1) ... 263s Selecting previously unselected package libgpgme11t64:arm64. 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75907 files and directories currently installed.) 264s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_arm64.deb ... 264s Unpacking libgpgme11t64:arm64 (1.18.0-4.1ubuntu3) ... 264s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_arm64.deb ... 264s Unpacking libvolume-key1:arm64 (0.3.12-7build1) over (0.3.12-5build2) ... 264s Preparing to unpack .../02-libqrtr-glib0_1.2.2-1ubuntu3_arm64.deb ... 264s Unpacking libqrtr-glib0:arm64 (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 264s Preparing to unpack .../03-libqmi-glib5_1.35.2-0ubuntu1_arm64.deb ... 264s Unpacking libqmi-glib5:arm64 (1.35.2-0ubuntu1) over (1.34.0-2) ... 264s Preparing to unpack .../04-libqmi-proxy_1.35.2-0ubuntu1_arm64.deb ... 264s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 264s Preparing to unpack .../05-libpolkit-agent-1-0_124-1ubuntu1_arm64.deb ... 264s Unpacking libpolkit-agent-1-0:arm64 (124-1ubuntu1) over (124-1) ... 264s Preparing to unpack .../06-libpolkit-gobject-1-0_124-1ubuntu1_arm64.deb ... 264s Unpacking libpolkit-gobject-1-0:arm64 (124-1ubuntu1) over (124-1) ... 264s Preparing to unpack .../07-libmm-glib0_1.23.4-0ubuntu1_arm64.deb ... 264s Unpacking libmm-glib0:arm64 (1.23.4-0ubuntu1) over (1.22.0-3) ... 264s Preparing to unpack .../08-libmbim-glib4_1.31.2-0ubuntu2_arm64.deb ... 264s Unpacking libmbim-glib4:arm64 (1.31.2-0ubuntu2) over (1.30.0-1) ... 264s Preparing to unpack .../09-libmbim-proxy_1.31.2-0ubuntu2_arm64.deb ... 264s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 264s Preparing to unpack .../10-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 264s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 264s Preparing to unpack .../11-libjson-glib-1.0-0_1.8.0-2build1_arm64.deb ... 264s Unpacking libjson-glib-1.0-0:arm64 (1.8.0-2build1) over (1.8.0-2) ... 264s Preparing to unpack .../12-libgusb2_0.4.8-1build1_arm64.deb ... 264s Unpacking libgusb2:arm64 (0.4.8-1build1) over (0.4.8-1) ... 264s Preparing to unpack .../13-libgudev-1.0-0_1%3a238-3ubuntu2_arm64.deb ... 264s Unpacking libgudev-1.0-0:arm64 (1:238-3ubuntu2) over (1:238-3) ... 264s dpkg: libarchive13:arm64: dependency problems, but removing anyway as you requested: 264s fwupd depends on libarchive13 (>= 3.2.1). 264s 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75914 files and directories currently installed.) 264s Removing libarchive13:arm64 (3.7.2-1ubuntu2) ... 264s Selecting previously unselected package libarchive13t64:arm64. 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 264s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_arm64.deb ... 264s Unpacking libarchive13t64:arm64 (3.7.2-1.1ubuntu2) ... 264s Preparing to unpack .../fwupd_1.9.15-2_arm64.deb ... 264s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ... 265s dpkg: libcurl3-gnutls:arm64: dependency problems, but removing anyway as you requested: 265s libfwupd2:arm64 depends on libcurl3-gnutls (>= 7.63.0). 265s 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75915 files and directories currently installed.) 265s Removing libcurl3-gnutls:arm64 (8.5.0-2ubuntu2) ... 265s Selecting previously unselected package libcurl3t64-gnutls:arm64. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 265s Preparing to unpack .../0-libcurl3t64-gnutls_8.5.0-2ubuntu8_arm64.deb ... 265s Unpacking libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu8) ... 265s Preparing to unpack .../1-libfwupd2_1.9.15-2_arm64.deb ... 265s Unpacking libfwupd2:arm64 (1.9.15-2) over (1.9.14-1) ... 265s Preparing to unpack .../2-libblockdev3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s Preparing to unpack .../3-libblockdev-utils3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev-utils3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s Preparing to unpack .../4-libblockdev-swap3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev-swap3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s Preparing to unpack .../5-libblockdev-part3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev-part3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s dpkg: libnvme1: dependency problems, but removing anyway as you requested: 265s libblockdev-nvme3:arm64 depends on libnvme1 (>= 1.7.1). 265s 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75915 files and directories currently installed.) 265s Removing libnvme1 (1.8-2) ... 265s Selecting previously unselected package libnvme1t64. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75908 files and directories currently installed.) 265s Preparing to unpack .../0-libnvme1t64_1.8-3_arm64.deb ... 265s Unpacking libnvme1t64 (1.8-3) ... 265s Preparing to unpack .../1-libblockdev-nvme3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev-nvme3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s Preparing to unpack .../2-libblockdev-mdraid3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev-mdraid3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s Preparing to unpack .../3-libblockdev-loop3_3.1.0-1build1_arm64.deb ... 265s Unpacking libblockdev-loop3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 265s Preparing to unpack .../4-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 265s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 266s Preparing to unpack .../5-logsave_1.47.0-2.4~exp1ubuntu2_arm64.deb ... 266s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 266s dpkg: libext2fs2:arm64: dependency problems, but removing anyway as you requested: 266s libblockdev-fs3:arm64 depends on libext2fs2 (>= 1.42.11). 266s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 266s btrfs-progs depends on libext2fs2 (>= 1.42). 266s 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75916 files and directories currently installed.) 266s Removing libext2fs2:arm64 (1.47.0-2ubuntu1) ... 266s Selecting previously unselected package libext2fs2t64:arm64. 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75909 files and directories currently installed.) 266s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_arm64.deb ... 266s Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2 to /lib/aarch64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' 266s Adding 'diversion of /lib/aarch64-linux-gnu/libe2p.so.2.3 to /lib/aarch64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 266s Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2 to /lib/aarch64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' 266s Adding 'diversion of /lib/aarch64-linux-gnu/libext2fs.so.2.4 to /lib/aarch64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 266s Unpacking libext2fs2t64:arm64 (1.47.0-2.4~exp1ubuntu2) ... 266s Setting up libcom-err2:arm64 (1.47.0-2.4~exp1ubuntu2) ... 266s Setting up libext2fs2t64:arm64 (1.47.0-2.4~exp1ubuntu2) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75925 files and directories currently installed.) 266s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_arm64.deb ... 266s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 266s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 266s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 266s 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75925 files and directories currently installed.) 266s Removing libreiserfscore0 (1:3.6.27-7) ... 266s Selecting previously unselected package libreiserfscore0t64. 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75920 files and directories currently installed.) 266s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_arm64.deb ... 266s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 266s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_arm64.deb ... 266s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 266s Preparing to unpack .../libblockdev-fs3_3.1.0-1build1_arm64.deb ... 266s Unpacking libblockdev-fs3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 266s Preparing to unpack .../libblockdev-crypto3_3.1.0-1build1_arm64.deb ... 266s Unpacking libblockdev-crypto3:arm64 (3.1.0-1build1) over (3.1.0-1) ... 266s Preparing to unpack .../bolt_0.9.6-2build1_arm64.deb ... 266s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 267s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 267s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 267s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 267s 267s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75926 files and directories currently installed.) 267s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 267s Selecting previously unselected package libglib2.0-0t64:arm64. 267s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75901 files and directories currently installed.) 267s Preparing to unpack .../0-libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 267s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 267s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 267s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 267s Preparing to unpack .../1-libjcat1_0.2.0-2build2_arm64.deb ... 267s Unpacking libjcat1:arm64 (0.2.0-2build2) over (0.2.0-2) ... 267s Preparing to unpack .../2-libldap2_2.6.7+dfsg-1~exp1ubuntu6_arm64.deb ... 267s Unpacking libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 267s Preparing to unpack .../3-ubuntu-pro-client-l10n_31.2.2_arm64.deb ... 267s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ... 267s Preparing to unpack .../4-ubuntu-pro-client_31.2.2_arm64.deb ... 267s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ... 267s Preparing to unpack .../5-gnupg-utils_2.4.4-2ubuntu15_arm64.deb ... 267s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 267s Preparing to unpack .../6-keyboxd_2.4.4-2ubuntu15_arm64.deb ... 267s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 267s dpkg: libnpth0:arm64: dependency problems, but removing anyway as you requested: 267s gpgv depends on libnpth0 (>= 0.90). 267s gpgsm depends on libnpth0 (>= 0.90). 267s gpg-agent depends on libnpth0 (>= 0.90). 267s gpg depends on libnpth0 (>= 0.90). 267s dirmngr depends on libnpth0 (>= 0.90). 267s 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75926 files and directories currently installed.) 268s Removing libnpth0:arm64 (1.6-3build2) ... 268s Selecting previously unselected package libnpth0t64:arm64. 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75921 files and directories currently installed.) 268s Preparing to unpack .../libnpth0t64_1.6-3.1_arm64.deb ... 268s Unpacking libnpth0t64:arm64 (1.6-3.1) ... 268s Setting up libnpth0t64:arm64 (1.6-3.1) ... 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75927 files and directories currently installed.) 268s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_arm64.deb ... 268s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 268s Setting up gpgv (2.4.4-2ubuntu15) ... 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75927 files and directories currently installed.) 268s Preparing to unpack .../0-gpg-wks-client_2.4.4-2ubuntu15_arm64.deb ... 268s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 268s Preparing to unpack .../1-gpg-agent_2.4.4-2ubuntu15_arm64.deb ... 268s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 268s Preparing to unpack .../2-gpg_2.4.4-2ubuntu15_arm64.deb ... 268s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 268s Preparing to unpack .../3-dirmngr_2.4.4-2ubuntu15_arm64.deb ... 268s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 268s Preparing to unpack .../4-gnupg_2.4.4-2ubuntu15_all.deb ... 268s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 268s Preparing to unpack .../5-python3-apt_2.7.7_arm64.deb ... 268s Unpacking python3-apt (2.7.7) over (2.7.6) ... 268s Preparing to unpack .../6-apt-utils_2.7.14_arm64.deb ... 268s Unpacking apt-utils (2.7.14) over (2.7.12) ... 269s dpkg: libapt-pkg6.0:arm64: dependency problems, but removing anyway as you requested: 269s apt depends on libapt-pkg6.0 (>= 2.7.12). 269s 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75925 files and directories currently installed.) 269s Removing libapt-pkg6.0:arm64 (2.7.12) ... 269s dpkg: libnettle8:arm64: dependency problems, but removing anyway as you requested: 269s libhogweed6:arm64 depends on libnettle8. 269s libgnutls30:arm64 depends on libnettle8 (>= 3.9~). 269s 269s Removing libnettle8:arm64 (3.9.1-2) ... 269s Selecting previously unselected package libapt-pkg6.0t64:arm64. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 269s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_arm64.deb ... 269s Unpacking libapt-pkg6.0t64:arm64 (2.7.14) ... 269s Setting up libapt-pkg6.0t64:arm64 (2.7.14) ... 269s Selecting previously unselected package libnettle8t64:arm64. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75919 files and directories currently installed.) 269s Preparing to unpack .../libnettle8t64_3.9.1-2.2_arm64.deb ... 269s Unpacking libnettle8t64:arm64 (3.9.1-2.2) ... 269s Setting up libnettle8t64:arm64 (3.9.1-2.2) ... 269s dpkg: libhogweed6:arm64: dependency problems, but removing anyway as you requested: 269s libgnutls30:arm64 depends on libhogweed6 (>= 3.6). 269s 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75927 files and directories currently installed.) 269s Removing libhogweed6:arm64 (3.9.1-2) ... 269s Selecting previously unselected package libhogweed6t64:arm64. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75922 files and directories currently installed.) 269s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_arm64.deb ... 269s Unpacking libhogweed6t64:arm64 (3.9.1-2.2) ... 269s Setting up libhogweed6t64:arm64 (3.9.1-2.2) ... 269s dpkg: libgnutls30:arm64: dependency problems, but removing anyway as you requested: 269s u-boot-tools depends on libgnutls30 (>= 3.7.3). 269s apt depends on libgnutls30 (>= 3.8.1). 269s 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75928 files and directories currently installed.) 269s Removing libgnutls30:arm64 (3.8.3-1ubuntu1) ... 269s Selecting previously unselected package libgnutls30t64:arm64. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75919 files and directories currently installed.) 269s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_arm64.deb ... 269s Unpacking libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 270s Setting up libgnutls30t64:arm64 (3.8.3-1.1ubuntu2) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75947 files and directories currently installed.) 270s Preparing to unpack .../archives/apt_2.7.14_arm64.deb ... 270s Unpacking apt (2.7.14) over (2.7.12) ... 270s Setting up apt (2.7.14) ... 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75947 files and directories currently installed.) 271s Preparing to unpack .../gpgconf_2.4.4-2ubuntu15_arm64.deb ... 271s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 271s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_arm64.deb ... 271s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 271s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 271s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 271s gawk depends on libreadline8 (>= 6.0). 271s fdisk depends on libreadline8 (>= 6.0). 271s 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75947 files and directories currently installed.) 271s Removing libreadline8:arm64 (8.2-3) ... 271s Selecting previously unselected package libreadline8t64:arm64. 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75935 files and directories currently installed.) 271s Preparing to unpack .../libreadline8t64_8.2-4_arm64.deb ... 271s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 271s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 271s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 271s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 271s Unpacking libreadline8t64:arm64 (8.2-4) ... 272s Setting up libreadline8t64:arm64 (8.2-4) ... 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75955 files and directories currently installed.) 272s Preparing to unpack .../gawk_1%3a5.2.1-2build2_arm64.deb ... 272s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 272s Preparing to unpack .../fdisk_2.39.3-9ubuntu2_arm64.deb ... 272s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 272s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build3_arm64.deb ... 272s Unpacking libpython3.12-stdlib:arm64 (3.12.2-4build3) over (3.12.2-1) ... 272s Preparing to unpack .../perl-base_5.38.2-3.2_arm64.deb ... 272s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 272s Setting up perl-base (5.38.2-3.2) ... 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75953 files and directories currently installed.) 273s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 273s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 273s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_arm64.deb ... 273s Unpacking python3-gdbm:arm64 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 273s Preparing to unpack .../man-db_2.12.0-3build4_arm64.deb ... 273s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 273s dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested: 273s libperl5.38:arm64 depends on libgdbm-compat4 (>= 1.18-3). 273s 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75953 files and directories currently installed.) 273s Removing libgdbm-compat4:arm64 (1.23-5) ... 273s dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested: 273s libperl5.38:arm64 depends on libgdbm6 (>= 1.21). 273s 274s Removing libgdbm6:arm64 (1.23-5) ... 274s Selecting previously unselected package libgdbm6t64:arm64. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75943 files and directories currently installed.) 274s Preparing to unpack .../libgdbm6t64_1.23-5.1_arm64.deb ... 274s Unpacking libgdbm6t64:arm64 (1.23-5.1) ... 274s Selecting previously unselected package libgdbm-compat4t64:arm64. 274s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_arm64.deb ... 274s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ... 274s dpkg: libperl5.38:arm64: dependency problems, but removing anyway as you requested: 274s perl depends on libperl5.38 (= 5.38.2-3). 274s 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75955 files and directories currently installed.) 274s Removing libperl5.38:arm64 (5.38.2-3) ... 274s Selecting previously unselected package libperl5.38t64:arm64. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75426 files and directories currently installed.) 274s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_arm64.deb ... 274s Unpacking libperl5.38t64:arm64 (5.38.2-3.2) ... 274s Preparing to unpack .../perl_5.38.2-3.2_arm64.deb ... 274s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 274s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested: 274s libsasl2-modules-db:arm64 depends on libdb5.3. 274s libpam-modules:arm64 depends on libdb5.3. 274s iproute2 depends on libdb5.3. 274s 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75955 files and directories currently installed.) 274s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ... 275s Selecting previously unselected package libdb5.3t64:arm64. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75949 files and directories currently installed.) 275s Preparing to unpack .../0-libdb5.3t64_5.3.28+dfsg2-6_arm64.deb ... 275s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-6) ... 275s Preparing to unpack .../1-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_arm64.deb ... 275s Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 275s Preparing to unpack .../2-libsasl2-2_2.1.28+dfsg1-5ubuntu1_arm64.deb ... 275s Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 275s Preparing to unpack .../3-libfido2-1_1.14.0-1build1_arm64.deb ... 275s Unpacking libfido2-1:arm64 (1.14.0-1build1) over (1.14.0-1) ... 275s Preparing to unpack .../4-libcryptsetup12_2%3a2.7.0-1ubuntu2_arm64.deb ... 275s Unpacking libcryptsetup12:arm64 (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 275s Preparing to unpack .../5-dhcpcd-base_1%3a10.0.6-1ubuntu2_arm64.deb ... 275s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 275s dpkg: libuv1:arm64: dependency problems, but removing anyway as you requested: 275s bind9-libs:arm64 depends on libuv1 (>= 1.40.0). 275s 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75955 files and directories currently installed.) 275s Removing libuv1:arm64 (1.48.0-1) ... 275s Selecting previously unselected package libuv1t64:arm64. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75950 files and directories currently installed.) 275s Preparing to unpack .../libuv1t64_1.48.0-1.1_arm64.deb ... 275s Unpacking libuv1t64:arm64 (1.48.0-1.1) ... 275s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_arm64.deb ... 275s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 275s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_arm64.deb ... 275s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 275s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_arm64.deb ... 275s Unpacking bind9-libs:arm64 (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 275s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 275s systemd depends on libssl3 (>= 3.0.0). 275s mtd-utils depends on libssl3 (>= 3.0.0). 275s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 275s 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 275s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 275s Selecting previously unselected package libssl3t64:arm64. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75945 files and directories currently installed.) 275s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 275s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 276s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 276s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_arm64.deb ... 276s Unpacking libnss-systemd:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 276s Preparing to unpack .../libudev1_255.4-1ubuntu5_arm64.deb ... 276s Unpacking libudev1:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 276s Setting up libudev1:arm64 (255.4-1ubuntu5) ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 276s Preparing to unpack .../systemd_255.4-1ubuntu5_arm64.deb ... 276s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 276s Preparing to unpack .../udev_255.4-1ubuntu5_arm64.deb ... 276s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 277s Preparing to unpack .../libsystemd0_255.4-1ubuntu5_arm64.deb ... 277s Unpacking libsystemd0:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 277s Setting up libsystemd0:arm64 (255.4-1ubuntu5) ... 277s Setting up libcryptsetup12:arm64 (2:2.7.0-1ubuntu2) ... 277s Setting up libkmod2:arm64 (31+20240202-2ubuntu4) ... 277s Setting up libsystemd-shared:arm64 (255.4-1ubuntu5) ... 277s Setting up systemd-dev (255.4-1ubuntu5) ... 277s Setting up systemd (255.4-1ubuntu5) ... 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 278s Preparing to unpack .../systemd-sysv_255.4-1ubuntu5_arm64.deb ... 278s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 278s Preparing to unpack .../libpam-systemd_255.4-1ubuntu5_arm64.deb ... 278s Unpacking libpam-systemd:arm64 (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 278s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_arm64.deb ... 278s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 278s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ... 278s pam_namespace.service is a disabled or a static unit not running, not starting it. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 279s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_arm64.deb ... 279s Unpacking libpam-modules:arm64 (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 279s Setting up libpam-modules:arm64 (1.5.3-5ubuntu3) ... 279s Installing new version of config file /etc/security/namespace.init ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 279s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ... 279s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 279s Setting up libpam-runtime (1.5.3-5ubuntu3) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 279s Preparing to unpack .../0-dbus-user-session_1.14.10-4ubuntu2_arm64.deb ... 279s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 279s Preparing to unpack .../1-libapparmor1_4.0.0-beta3-0ubuntu2_arm64.deb ... 279s Unpacking libapparmor1:arm64 (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 280s Preparing to unpack .../2-libexpat1_2.6.1-2_arm64.deb ... 280s Unpacking libexpat1:arm64 (2.6.1-2) over (2.6.0-1) ... 280s Preparing to unpack .../3-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 280s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 280s Preparing to unpack .../4-dbus-bin_1.14.10-4ubuntu2_arm64.deb ... 280s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 280s Preparing to unpack .../5-dbus_1.14.10-4ubuntu2_arm64.deb ... 280s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 280s Preparing to unpack .../6-dbus-daemon_1.14.10-4ubuntu2_arm64.deb ... 280s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 280s Preparing to unpack .../7-libdbus-1-3_1.14.10-4ubuntu2_arm64.deb ... 280s Unpacking libdbus-1-3:arm64 (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 280s Preparing to unpack .../8-libmount1_2.39.3-9ubuntu2_arm64.deb ... 280s Unpacking libmount1:arm64 (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 280s Setting up libmount1:arm64 (2.39.3-9ubuntu2) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 280s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_arm64.deb ... 280s Unpacking libseccomp2:arm64 (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ... 280s Setting up libseccomp2:arm64 (2.5.5-1ubuntu2) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 280s Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_arm64.deb ... 280s Unpacking libdevmapper1.02.1:arm64 (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 280s Preparing to unpack .../libuuid1_2.39.3-9ubuntu2_arm64.deb ... 280s Unpacking libuuid1:arm64 (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 280s Setting up libuuid1:arm64 (2.39.3-9ubuntu2) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 280s Preparing to unpack .../libfdisk1_2.39.3-9ubuntu2_arm64.deb ... 280s Unpacking libfdisk1:arm64 (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 280s Preparing to unpack .../mount_2.39.3-9ubuntu2_arm64.deb ... 280s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 280s Preparing to unpack .../libsqlite3-0_3.45.1-1ubuntu1_arm64.deb ... 280s Unpacking libsqlite3-0:arm64 (3.45.1-1ubuntu1) over (3.45.1-1) ... 280s Preparing to unpack .../gcc-14-base_14-20240315-1ubuntu1_arm64.deb ... 280s Unpacking gcc-14-base:arm64 (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 280s Setting up gcc-14-base:arm64 (14-20240315-1ubuntu1) ... 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 281s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_arm64.deb ... 281s Unpacking libgcc-s1:arm64 (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 281s Setting up libgcc-s1:arm64 (14-20240315-1ubuntu1) ... 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 281s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_arm64.deb ... 281s Unpacking libstdc++6:arm64 (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 281s Setting up libstdc++6:arm64 (14-20240315-1ubuntu1) ... 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 281s Preparing to unpack .../dpkg_1.22.6ubuntu5_arm64.deb ... 281s Unpacking dpkg (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 281s Setting up dpkg (1.22.6ubuntu5) ... 282s Setting up libpython3.12-minimal:arm64 (3.12.2-4build3) ... 282s Setting up libexpat1:arm64 (2.6.1-2) ... 282s Setting up python3.12-minimal (3.12.2-4build3) ... 284s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 284s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_arm64.deb ... 284s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 284s Setting up python3-minimal (3.12.2-0ubuntu1) ... 284s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 284s Preparing to unpack .../python3_3.12.2-0ubuntu1_arm64.deb ... 284s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 284s Preparing to unpack .../libpython3-stdlib_3.12.2-0ubuntu1_arm64.deb ... 284s Unpacking libpython3-stdlib:arm64 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 284s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_arm64.deb ... 284s Unpacking libsmartcols1:arm64 (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 284s Setting up libsmartcols1:arm64 (2.39.3-9ubuntu2) ... 284s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 284s Preparing to unpack .../0-bsdextrautils_2.39.3-9ubuntu2_arm64.deb ... 284s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 285s Preparing to unpack .../1-groff-base_1.23.0-3build1_arm64.deb ... 285s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 285s Preparing to unpack .../2-pinentry-curses_1.2.1-3ubuntu4_arm64.deb ... 285s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 285s Preparing to unpack .../3-readline-common_8.2-4_all.deb ... 285s Unpacking readline-common (8.2-4) over (8.2-3) ... 285s Preparing to unpack .../4-libxml2_2.9.14+dfsg-1.3ubuntu2_arm64.deb ... 285s Unpacking libxml2:arm64 (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 285s Preparing to unpack .../5-libbpf1_1%3a1.3.0-2build1_arm64.deb ... 285s Unpacking libbpf1:arm64 (1:1.3.0-2build1) over (1:1.3.0-2) ... 285s dpkg: libelf1:arm64: dependency problems, but removing anyway as you requested: 285s linux-headers-6.8.0-11-generic depends on libelf1 (>= 0.144). 285s iproute2 depends on libelf1 (>= 0.131). 285s 285s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 285s Removing libelf1:arm64 (0.190-1) ... 285s Selecting previously unselected package libelf1t64:arm64. 285s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75951 files and directories currently installed.) 285s Preparing to unpack .../libelf1t64_0.190-1.1build2_arm64.deb ... 285s Unpacking libelf1t64:arm64 (0.190-1.1build2) ... 285s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 285s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 285s Preparing to unpack .../lsof_4.95.0-1build2_arm64.deb ... 285s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 285s Preparing to unpack .../libnsl2_1.3.0-3build2_arm64.deb ... 285s Unpacking libnsl2:arm64 (1.3.0-3build2) over (1.3.0-3) ... 285s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 285s iproute2 depends on libtirpc3 (>= 1.0.2). 285s 285s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 285s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 285s Selecting previously unselected package libtirpc3t64:arm64. 285s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75950 files and directories currently installed.) 285s Preparing to unpack .../0-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 285s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 285s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 285s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 285s Preparing to unpack .../1-iproute2_6.1.0-1ubuntu5_arm64.deb ... 285s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 286s Preparing to unpack .../2-python3-yaml_6.0.1-2build1_arm64.deb ... 286s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 286s Preparing to unpack .../3-libusb-1.0-0_2%3a1.0.27-1_arm64.deb ... 286s Unpacking libusb-1.0-0:arm64 (2:1.0.27-1) over (2:1.0.26-1) ... 286s Preparing to unpack .../4-libprotobuf-c1_1.4.1-1ubuntu3_arm64.deb ... 286s Unpacking libprotobuf-c1:arm64 (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 286s Preparing to unpack .../5-libnghttp2-14_1.59.0-1build1_arm64.deb ... 286s Unpacking libnghttp2-14:arm64 (1.59.0-1build1) over (1.59.0-1) ... 286s Preparing to unpack .../6-libproc2-0_2%3a4.0.4-4ubuntu2_arm64.deb ... 286s Unpacking libproc2-0:arm64 (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 286s Preparing to unpack .../7-procps_2%3a4.0.4-4ubuntu2_arm64.deb ... 286s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 286s Preparing to unpack .../8-coreutils_9.4-3ubuntu3_arm64.deb ... 286s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 286s Setting up coreutils (9.4-3ubuntu3) ... 286s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75961 files and directories currently installed.) 286s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_arm64.deb ... 286s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 287s Setting up util-linux (2.39.3-9ubuntu2) ... 288s fstrim.service is a disabled or a static unit not running, not starting it. 288s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75961 files and directories currently installed.) 288s Removing libatm1:arm64 (1:2.5.1-5) ... 288s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 288s Preparing to unpack .../file_1%3a5.45-3_arm64.deb ... 288s Unpacking file (1:5.45-3) over (1:5.45-2) ... 288s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75956 files and directories currently installed.) 288s Removing libmagic1:arm64 (1:5.45-2) ... 288s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75946 files and directories currently installed.) 288s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_arm64.deb ... 288s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 288s Selecting previously unselected package libmagic1t64:arm64. 288s Preparing to unpack .../libmagic1t64_1%3a5.45-3_arm64.deb ... 288s Unpacking libmagic1t64:arm64 (1:5.45-3) ... 288s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_arm64.deb ... 288s Unpacking libplymouth5:arm64 (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 289s Preparing to unpack .../libfreetype6_2.13.2+dfsg-1build2_arm64.deb ... 289s Unpacking libfreetype6:arm64 (2.13.2+dfsg-1build2) over (2.13.2+dfsg-1) ... 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75957 files and directories currently installed.) 289s Removing libpng16-16:arm64 (1.6.43-1) ... 289s Selecting previously unselected package libpng16-16t64:arm64. 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75947 files and directories currently installed.) 289s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 289s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 289s Preparing to unpack .../multipath-tools_0.9.4-5ubuntu6_arm64.deb ... 289s Unpacking multipath-tools (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 289s dpkg: liburcu8:arm64: dependency problems, but removing anyway as you requested: 289s xfsprogs depends on liburcu8 (>= 0.13.0). 289s 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75957 files and directories currently installed.) 289s Removing liburcu8:arm64 (0.14.0-3) ... 289s Selecting previously unselected package liburcu8t64:arm64. 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75938 files and directories currently installed.) 289s Preparing to unpack .../liburcu8t64_0.14.0-3.1_arm64.deb ... 289s Unpacking liburcu8t64:arm64 (0.14.0-3.1) ... 289s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_arm64.deb ... 289s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ... 289s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_arm64.deb ... 289s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 289s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_arm64.deb ... 289s Unpacking libdebconfclient0:arm64 (0.271ubuntu2) over (0.271ubuntu1) ... 289s Setting up libdebconfclient0:arm64 (0.271ubuntu2) ... 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 289s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 289s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 289s Setting up libsemanage-common (3.5-1build4) ... 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 289s Preparing to unpack .../libsemanage2_3.5-1build4_arm64.deb ... 289s Unpacking libsemanage2:arm64 (3.5-1build4) over (3.5-1build2) ... 290s Setting up libsemanage2:arm64 (3.5-1build4) ... 290s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 290s Preparing to unpack .../install-info_7.1-3build1_arm64.deb ... 290s Unpacking install-info (7.1-3build1) over (7.1-3) ... 290s Setting up install-info (7.1-3build1) ... 290s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75958 files and directories currently installed.) 290s Preparing to unpack .../000-gcc-13-base_13.2.0-21ubuntu1_arm64.deb ... 290s Unpacking gcc-13-base:arm64 (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ... 290s Preparing to unpack .../001-libss2_1.47.0-2.4~exp1ubuntu2_arm64.deb ... 290s Unpacking libss2:arm64 (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 290s Preparing to unpack .../002-dmsetup_2%3a1.02.185-3ubuntu2_arm64.deb ... 290s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 290s Preparing to unpack .../003-eject_2.39.3-9ubuntu2_arm64.deb ... 290s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 290s Preparing to unpack .../004-krb5-locales_1.20.1-6ubuntu1_all.deb ... 290s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 290s Preparing to unpack .../005-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 290s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 290s Preparing to unpack .../006-libslang2_2.3.3-3build1_arm64.deb ... 290s Unpacking libslang2:arm64 (2.3.3-3build1) over (2.3.3-3) ... 290s Preparing to unpack .../007-libtext-charwidth-perl_0.04-11build2_arm64.deb ... 290s Unpacking libtext-charwidth-perl:arm64 (0.04-11build2) over (0.04-11build1) ... 290s Preparing to unpack .../008-libtext-iconv-perl_1.7-8build2_arm64.deb ... 290s Unpacking libtext-iconv-perl:arm64 (1.7-8build2) over (1.7-8build1) ... 290s Preparing to unpack .../009-python-apt-common_2.7.7_all.deb ... 290s Unpacking python-apt-common (2.7.7) over (2.7.6) ... 290s Preparing to unpack .../010-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 291s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 291s Preparing to unpack .../011-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 291s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 291s Preparing to unpack .../012-rsyslog_8.2312.0-3ubuntu7_arm64.deb ... 291s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ... 291s Preparing to unpack .../013-vim-tiny_2%3a9.1.0016-1ubuntu6_arm64.deb ... 291s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 291s Preparing to unpack .../014-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ... 291s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 291s Selecting previously unselected package xdg-user-dirs. 291s Preparing to unpack .../015-xdg-user-dirs_0.18-1_arm64.deb ... 291s Unpacking xdg-user-dirs (0.18-1) ... 291s Preparing to unpack .../016-xxd_2%3a9.1.0016-1ubuntu6_arm64.deb ... 291s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 291s Preparing to unpack .../017-apparmor_4.0.0-beta3-0ubuntu2_arm64.deb ... 292s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 293s Preparing to unpack .../018-ftp_20230507-2build1_all.deb ... 293s Unpacking ftp (20230507-2build1) over (20230507-2) ... 293s Preparing to unpack .../019-inetutils-telnet_2%3a2.5-3ubuntu3_arm64.deb ... 293s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 293s Preparing to unpack .../020-info_7.1-3build1_arm64.deb ... 293s Unpacking info (7.1-3build1) over (7.1-3) ... 293s Preparing to unpack .../021-libxmuu1_2%3a1.1.3-3build1_arm64.deb ... 293s Unpacking libxmuu1:arm64 (2:1.1.3-3build1) over (2:1.1.3-3) ... 293s Preparing to unpack .../022-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_arm64.deb ... 293s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 293s Selecting previously unselected package manpages. 293s Preparing to unpack .../023-manpages_6.05.01-1_all.deb ... 293s Unpacking manpages (6.05.01-1) ... 293s Preparing to unpack .../024-mtr-tiny_0.95-1.1build1_arm64.deb ... 293s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 293s Preparing to unpack .../025-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_arm64.deb ... 293s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 293s Preparing to unpack .../026-plymouth_24.004.60-1ubuntu6_arm64.deb ... 293s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 293s Preparing to unpack .../027-telnet_0.17+2.5-3ubuntu3_all.deb ... 293s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 294s Preparing to unpack .../028-usb.ids_2024.03.18-1_all.deb ... 294s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 294s Preparing to unpack .../029-xz-utils_5.6.0-0.2_arm64.deb ... 294s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 294s Preparing to unpack .../030-libgprofng0_2.42-4ubuntu1_arm64.deb ... 294s Unpacking libgprofng0:arm64 (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../031-libctf0_2.42-4ubuntu1_arm64.deb ... 294s Unpacking libctf0:arm64 (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../032-libctf-nobfd0_2.42-4ubuntu1_arm64.deb ... 294s Unpacking libctf-nobfd0:arm64 (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../033-binutils-aarch64-linux-gnu_2.42-4ubuntu1_arm64.deb ... 294s Unpacking binutils-aarch64-linux-gnu (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../034-libbinutils_2.42-4ubuntu1_arm64.deb ... 294s Unpacking libbinutils:arm64 (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../035-binutils_2.42-4ubuntu1_arm64.deb ... 294s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../036-binutils-common_2.42-4ubuntu1_arm64.deb ... 294s Unpacking binutils-common:arm64 (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Preparing to unpack .../037-libsframe1_2.42-4ubuntu1_arm64.deb ... 294s Unpacking libsframe1:arm64 (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 294s Selecting previously unselected package libllvm18:arm64. 294s Preparing to unpack .../038-libllvm18_1%3a18.1.2-1ubuntu2_arm64.deb ... 294s Unpacking libllvm18:arm64 (1:18.1.2-1ubuntu2) ... 295s Selecting previously unselected package libclang-cpp18. 295s Preparing to unpack .../039-libclang-cpp18_1%3a18.1.2-1ubuntu2_arm64.deb ... 295s Unpacking libclang-cpp18 (1:18.1.2-1ubuntu2) ... 296s Selecting previously unselected package libbpfcc:arm64. 296s Preparing to unpack .../040-libbpfcc_0.29.1+ds-1ubuntu4_arm64.deb ... 296s Unpacking libbpfcc:arm64 (0.29.1+ds-1ubuntu4) ... 296s Selecting previously unselected package python3-bpfcc. 296s Preparing to unpack .../041-python3-bpfcc_0.29.1+ds-1ubuntu4_all.deb ... 296s Unpacking python3-bpfcc (0.29.1+ds-1ubuntu4) ... 296s Selecting previously unselected package ieee-data. 296s Preparing to unpack .../042-ieee-data_20220827.1_all.deb ... 296s Unpacking ieee-data (20220827.1) ... 296s Selecting previously unselected package python3-netaddr. 296s Preparing to unpack .../043-python3-netaddr_0.8.0-2ubuntu1_all.deb ... 296s Unpacking python3-netaddr (0.8.0-2ubuntu1) ... 296s Selecting previously unselected package bpfcc-tools. 296s Preparing to unpack .../044-bpfcc-tools_0.29.1+ds-1ubuntu4_all.deb ... 296s Unpacking bpfcc-tools (0.29.1+ds-1ubuntu4) ... 296s Selecting previously unselected package libclang1-18. 296s Preparing to unpack .../045-libclang1-18_1%3a18.1.2-1ubuntu2_arm64.deb ... 296s Unpacking libclang1-18 (1:18.1.2-1ubuntu2) ... 296s Selecting previously unselected package libdw1t64:arm64. 296s Preparing to unpack .../046-libdw1t64_0.190-1.1build2_arm64.deb ... 296s Unpacking libdw1t64:arm64 (0.190-1.1build2) ... 296s Selecting previously unselected package bpftrace. 297s Preparing to unpack .../047-bpftrace_0.20.2-1ubuntu1_arm64.deb ... 297s Unpacking bpftrace (0.20.2-1ubuntu1) ... 297s Preparing to unpack .../048-cryptsetup-bin_2%3a2.7.0-1ubuntu2_arm64.deb ... 297s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 297s Preparing to unpack .../049-dpkg-dev_1.22.6ubuntu5_all.deb ... 297s Unpacking dpkg-dev (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 297s Preparing to unpack .../050-libdpkg-perl_1.22.6ubuntu5_all.deb ... 297s Unpacking libdpkg-perl (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 297s Selecting previously unselected package fonts-dejavu-mono. 297s Preparing to unpack .../051-fonts-dejavu-mono_2.37-8_all.deb ... 297s Unpacking fonts-dejavu-mono (2.37-8) ... 297s Selecting previously unselected package fonts-dejavu-core. 297s Preparing to unpack .../052-fonts-dejavu-core_2.37-8_all.deb ... 297s Unpacking fonts-dejavu-core (2.37-8) ... 297s Selecting previously unselected package fontconfig-config. 297s Preparing to unpack .../053-fontconfig-config_2.15.0-1.1ubuntu1_arm64.deb ... 297s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ... 298s Preparing to unpack .../054-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 298s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 298s Preparing to unpack .../055-grub2-common_2.12-1ubuntu5_arm64.deb ... 298s Unpacking grub2-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 298s Preparing to unpack .../056-grub-common_2.12-1ubuntu5_arm64.deb ... 298s Unpacking grub-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 298s Selecting previously unselected package hwdata. 298s Preparing to unpack .../057-hwdata_0.379-1_all.deb ... 298s Unpacking hwdata (0.379-1) ... 298s Preparing to unpack .../058-libibverbs1_50.0-2build1_arm64.deb ... 298s Unpacking libibverbs1:arm64 (50.0-2build1) over (50.0-2) ... 298s Preparing to unpack .../059-ibverbs-providers_50.0-2build1_arm64.deb ... 298s Unpacking ibverbs-providers:arm64 (50.0-2build1) over (50.0-2) ... 298s Preparing to unpack .../060-jq_1.7.1-3_arm64.deb ... 298s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 298s Preparing to unpack .../061-libjq1_1.7.1-3_arm64.deb ... 298s Unpacking libjq1:arm64 (1.7.1-3) over (1.7.1-2) ... 298s Selecting previously unselected package libaio1t64:arm64. 298s Preparing to unpack .../062-libaio1t64_0.3.113-6_arm64.deb ... 298s Unpacking libaio1t64:arm64 (0.3.113-6) ... 298s Selecting previously unselected package libatm1t64:arm64. 298s Preparing to unpack .../063-libatm1t64_1%3a2.5.1-5.1_arm64.deb ... 298s Unpacking libatm1t64:arm64 (1:2.5.1-5.1) ... 298s Selecting previously unselected package libc-dev-bin. 298s Preparing to unpack .../064-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 298s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 298s Selecting previously unselected package libfontconfig1:arm64. 298s Preparing to unpack .../065-libfontconfig1_2.15.0-1.1ubuntu1_arm64.deb ... 298s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu1) ... 298s Selecting previously unselected package libjpeg-turbo8:arm64. 298s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 298s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 298s Selecting previously unselected package libjpeg8:arm64. 299s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_arm64.deb ... 299s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 299s Selecting previously unselected package libdeflate0:arm64. 299s Preparing to unpack .../068-libdeflate0_1.19-1_arm64.deb ... 299s Unpacking libdeflate0:arm64 (1.19-1) ... 299s Selecting previously unselected package libjbig0:arm64. 299s Preparing to unpack .../069-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 299s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 299s Selecting previously unselected package liblerc4:arm64. 299s Preparing to unpack .../070-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 299s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 299s Selecting previously unselected package libsharpyuv0:arm64. 299s Preparing to unpack .../071-libsharpyuv0_1.3.2-0.4build2_arm64.deb ... 299s Unpacking libsharpyuv0:arm64 (1.3.2-0.4build2) ... 299s Selecting previously unselected package libwebp7:arm64. 299s Preparing to unpack .../072-libwebp7_1.3.2-0.4build2_arm64.deb ... 299s Unpacking libwebp7:arm64 (1.3.2-0.4build2) ... 299s Selecting previously unselected package libtiff6:arm64. 299s Preparing to unpack .../073-libtiff6_4.5.1+git230720-4ubuntu1_arm64.deb ... 299s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu1) ... 299s Selecting previously unselected package libxpm4:arm64. 299s Preparing to unpack .../074-libxpm4_1%3a3.5.17-1build1_arm64.deb ... 299s Unpacking libxpm4:arm64 (1:3.5.17-1build1) ... 299s Selecting previously unselected package libgd3:arm64. 299s Preparing to unpack .../075-libgd3_2.3.3-9ubuntu3_arm64.deb ... 299s Unpacking libgd3:arm64 (2.3.3-9ubuntu3) ... 299s Selecting previously unselected package libc-devtools. 299s Preparing to unpack .../076-libc-devtools_2.39-0ubuntu6_arm64.deb ... 299s Unpacking libc-devtools (2.39-0ubuntu6) ... 299s Selecting previously unselected package linux-libc-dev:arm64. 299s Preparing to unpack .../077-linux-libc-dev_6.8.0-20.20_arm64.deb ... 299s Unpacking linux-libc-dev:arm64 (6.8.0-20.20) ... 299s Selecting previously unselected package libcrypt-dev:arm64. 299s Preparing to unpack .../078-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 299s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 299s Selecting previously unselected package rpcsvc-proto. 299s Preparing to unpack .../079-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 299s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 299s Selecting previously unselected package libc6-dev:arm64. 299s Preparing to unpack .../080-libc6-dev_2.39-0ubuntu6_arm64.deb ... 299s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 300s Preparing to unpack .../081-libevent-core-2.1-7_2.1.12-stable-9build1_arm64.deb ... 300s Unpacking libevent-core-2.1-7:arm64 (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 300s Preparing to unpack .../082-libftdi1-2_1.5-6build4_arm64.deb ... 300s Unpacking libftdi1-2:arm64 (1.5-6build4) over (1.5-6build3) ... 300s Preparing to unpack .../083-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 300s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 300s Selecting previously unselected package libunwind8:arm64. 300s Preparing to unpack .../084-libunwind8_1.6.2-3_arm64.deb ... 300s Unpacking libunwind8:arm64 (1.6.2-3) ... 300s Selecting previously unselected package linux-modules-6.8.0-20-generic. 300s Preparing to unpack .../085-linux-modules-6.8.0-20-generic_6.8.0-20.20_arm64.deb ... 300s Unpacking linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 301s Selecting previously unselected package linux-image-6.8.0-20-generic. 301s Preparing to unpack .../086-linux-image-6.8.0-20-generic_6.8.0-20.20_arm64.deb ... 301s Unpacking linux-image-6.8.0-20-generic (6.8.0-20.20) ... 301s Selecting previously unselected package linux-modules-extra-6.8.0-20-generic. 301s Preparing to unpack .../087-linux-modules-extra-6.8.0-20-generic_6.8.0-20.20_arm64.deb ... 301s Unpacking linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 303s Preparing to unpack .../088-linux-generic_6.8.0-20.20+1_arm64.deb ... 303s Unpacking linux-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 303s Preparing to unpack .../089-linux-image-generic_6.8.0-20.20+1_arm64.deb ... 303s Unpacking linux-image-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 303s Preparing to unpack .../090-linux-virtual_6.8.0-20.20+1_arm64.deb ... 303s Unpacking linux-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 303s Preparing to unpack .../091-linux-image-virtual_6.8.0-20.20+1_arm64.deb ... 303s Unpacking linux-image-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 303s Preparing to unpack .../092-linux-headers-virtual_6.8.0-20.20+1_arm64.deb ... 303s Unpacking linux-headers-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 303s Selecting previously unselected package linux-headers-6.8.0-20. 303s Preparing to unpack .../093-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 303s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 308s Selecting previously unselected package linux-headers-6.8.0-20-generic. 308s Preparing to unpack .../094-linux-headers-6.8.0-20-generic_6.8.0-20.20_arm64.deb ... 308s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 311s Preparing to unpack .../095-linux-headers-generic_6.8.0-20.20+1_arm64.deb ... 311s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 311s Selecting previously unselected package linux-tools-common. 311s Preparing to unpack .../096-linux-tools-common_6.8.0-20.20_all.deb ... 311s Unpacking linux-tools-common (6.8.0-20.20) ... 311s Selecting previously unselected package linux-tools-6.8.0-20. 311s Preparing to unpack .../097-linux-tools-6.8.0-20_6.8.0-20.20_arm64.deb ... 311s Unpacking linux-tools-6.8.0-20 (6.8.0-20.20) ... 311s Selecting previously unselected package linux-tools-6.8.0-20-generic. 311s Preparing to unpack .../098-linux-tools-6.8.0-20-generic_6.8.0-20.20_arm64.deb ... 311s Unpacking linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 311s Selecting previously unselected package manpages-dev. 311s Preparing to unpack .../099-manpages-dev_6.05.01-1_all.deb ... 311s Unpacking manpages-dev (6.05.01-1) ... 312s Preparing to unpack .../100-python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 312s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 312s Preparing to unpack .../101-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 312s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 312s Preparing to unpack .../102-python3-pyrsistent_0.20.0-1build1_arm64.deb ... 312s Unpacking python3-pyrsistent:arm64 (0.20.0-1build1) over (0.20.0-1) ... 312s Preparing to unpack .../103-python3-typing-extensions_4.10.0-1_all.deb ... 312s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 312s Selecting previously unselected package ubuntu-kernel-accessories. 313s Preparing to unpack .../104-ubuntu-kernel-accessories_1.536build1_arm64.deb ... 313s Unpacking ubuntu-kernel-accessories (1.536build1) ... 313s Preparing to unpack .../105-kpartx_0.9.4-5ubuntu6_arm64.deb ... 313s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 313s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 313s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 313s Setting up motd-news-config (13ubuntu8) ... 313s Setting up libtext-iconv-perl:arm64 (1.7-8build2) ... 313s Setting up libtext-charwidth-perl:arm64 (0.04-11build2) ... 313s Setting up libsharpyuv0:arm64 (1.3.2-0.4build2) ... 313s Setting up liburcu8t64:arm64 (0.14.0-3.1) ... 313s Setting up tcpdump (4.99.4-3ubuntu2) ... 313s Setting up libibverbs1:arm64 (50.0-2build1) ... 313s Setting up systemd-sysv (255.4-1ubuntu5) ... 313s Setting up ubuntu-kernel-accessories (1.536build1) ... 313s Setting up libapparmor1:arm64 (4.0.0-beta3-0ubuntu2) ... 313s Setting up libatm1t64:arm64 (1:2.5.1-5.1) ... 313s Setting up mokutil (0.6.0-2build1) ... 313s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 313s Setting up libgdbm6t64:arm64 (1.23-5.1) ... 313s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 313s Setting up libxpm4:arm64 (1:3.5.17-1build1) ... 313s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ... 313s Setting up xdg-user-dirs (0.18-1) ... 313s Setting up ibverbs-providers:arm64 (50.0-2build1) ... 313s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 313s Setting up libmagic-mgc (1:5.45-3) ... 313s Setting up gawk (1:5.2.1-2build2) ... 313s Setting up libjq1:arm64 (1.7.1-3) ... 313s Setting up manpages (6.05.01-1) ... 313s Setting up libtirpc-common (1.3.4+ds-1.1) ... 313s Setting up libbrotli1:arm64 (1.1.0-2build1) ... 313s Setting up libsqlite3-0:arm64 (3.45.1-1ubuntu1) ... 313s Setting up libsasl2-modules:arm64 (2.1.28+dfsg1-5ubuntu1) ... 313s Setting up libuv1t64:arm64 (1.48.0-1.1) ... 313s Setting up libmagic1t64:arm64 (1:5.45-3) ... 313s Setting up rsyslog (8.2312.0-3ubuntu7) ... 313s info: The user `syslog' is already a member of `adm'. 315s Setting up binutils-common:arm64 (2.42-4ubuntu1) ... 315s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 315s Setting up libnghttp2-14:arm64 (1.59.0-1build1) ... 315s Setting up libdeflate0:arm64 (1.19-1) ... 315s Setting up linux-libc-dev:arm64 (6.8.0-20.20) ... 315s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 315s Setting up libctf-nobfd0:arm64 (2.42-4ubuntu1) ... 315s Setting up libnss-systemd:arm64 (255.4-1ubuntu5) ... 315s Setting up krb5-locales (1.20.1-6ubuntu1) ... 315s Setting up file (1:5.45-3) ... 315s Setting up kmod (31+20240202-2ubuntu4) ... 316s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 316s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 316s Setting up libunwind8:arm64 (1.6.2-3) ... 316s Setting up libprotobuf-c1:arm64 (1.4.1-1ubuntu3) ... 316s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 316s Setting up xxd (2:9.1.0016-1ubuntu6) ... 316s Setting up libsframe1:arm64 (2.42-4ubuntu1) ... 316s Setting up libelf1t64:arm64 (0.190-1.1build2) ... 316s Setting up libkrb5support0:arm64 (1.20.1-6ubuntu1) ... 316s Setting up libdw1t64:arm64 (0.190-1.1build2) ... 316s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 316s Setting up eject (2.39.3-9ubuntu2) ... 316s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 316s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 316s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 316s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 316s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 316s Installing new version of config file /etc/apparmor.d/code ... 316s Installing new version of config file /etc/apparmor.d/firefox ... 318s Reloading AppArmor profiles 318s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 318s No schema files found: doing nothing. 318s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 318s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 318s Setting up vim-common (2:9.1.0016-1ubuntu6) ... 318s Setting up gcc-13-base:arm64 (13.2.0-21ubuntu1) ... 318s Setting up libqrtr-glib0:arm64 (1.2.2-1ubuntu3) ... 318s Setting up libslang2:arm64 (2.3.3-3build1) ... 318s Setting up libnvme1t64 (1.8-3) ... 318s Setting up mtr-tiny (0.95-1.1build1) ... 318s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 318s Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build6) ... 318s Setting up libdbus-1-3:arm64 (1.14.10-4ubuntu2) ... 318s Setting up xz-utils (5.6.0-0.2) ... 318s Setting up perl-modules-5.38 (5.38.2-3.2) ... 318s Setting up libproc2-0:arm64 (2:4.0.4-4ubuntu2) ... 318s Setting up libblockdev-utils3:arm64 (3.1.0-1build1) ... 318s Setting up fonts-dejavu-mono (2.37-8) ... 318s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 318s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 319s Setting up libevent-core-2.1-7:arm64 (2.1.12-stable-9build1) ... 319s Setting up udev (255.4-1ubuntu5) ... 320s Setting up libss2:arm64 (1.47.0-2.4~exp1ubuntu2) ... 320s Setting up usb.ids (2024.03.18-1) ... 320s Setting up sudo (1.9.15p5-3ubuntu3) ... 320s Setting up fonts-dejavu-core (2.37-8) ... 320s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 320s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 320s Setting up libk5crypto3:arm64 (1.20.1-6ubuntu1) ... 320s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 320s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 320s Setting up libwebp7:arm64 (1.3.2-0.4build2) ... 320s Setting up libfdisk1:arm64 (2.39.3-9ubuntu2) ... 320s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-6) ... 320s Setting up libblockdev-nvme3:arm64 (3.1.0-1build1) ... 320s Setting up libdevmapper1.02.1:arm64 (2:1.02.185-3ubuntu2) ... 320s Setting up libblockdev-fs3:arm64 (3.1.0-1build1) ... 320s Setting up libaio1t64:arm64 (0.3.113-6) ... 320s Setting up u-boot-tools (2024.01+dfsg-1ubuntu3) ... 320s Setting up python-apt-common (2.7.7) ... 320s Setting up mount (2.39.3-9ubuntu2) ... 320s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 320s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 322s uuidd.service is a disabled or a static unit not running, not starting it. 322s Setting up libmm-glib0:arm64 (1.23.4-0ubuntu1) ... 322s Setting up groff-base (1.23.0-3build1) ... 322s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 322s Setting up libplymouth5:arm64 (24.004.60-1ubuntu6) ... 322s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 322s Setting up kpartx (0.9.4-5ubuntu6) ... 322s Setting up jq (1.7.1-3) ... 322s Setting up procps (2:4.0.4-4ubuntu2) ... 323s Setting up gpgconf (2.4.4-2ubuntu15) ... 323s Setting up libgirepository-1.0-1:arm64 (1.79.1-1ubuntu6) ... 323s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 323s Setting up libkrb5-3:arm64 (1.20.1-6ubuntu1) ... 323s Setting up libpython3.11-minimal:arm64 (3.11.8-1build4) ... 323s Setting up libusb-1.0-0:arm64 (2:1.0.27-1) ... 323s Setting up libperl5.38t64:arm64 (5.38.2-3.2) ... 323s Setting up tnftp (20230507-2build1) ... 323s Setting up sbsigntool (0.9.4-3.1ubuntu5) ... 323s Setting up libbinutils:arm64 (2.42-4ubuntu1) ... 323s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 323s Setting up libfido2-1:arm64 (1.14.0-1build1) ... 323s Setting up libc-dev-bin (2.39-0ubuntu6) ... 323s Setting up openssl (3.0.13-0ubuntu2) ... 323s Setting up linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 327s Setting up readline-common (8.2-4) ... 327s Setting up libxml2:arm64 (2.9.14+dfsg-1.3ubuntu2) ... 327s Setting up libxmuu1:arm64 (2:1.1.3-3build1) ... 327s Setting up dbus-bin (1.14.10-4ubuntu2) ... 327s Setting up info (7.1-3build1) ... 327s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ... 327s Setting up gpg (2.4.4-2ubuntu15) ... 327s Setting up libgudev-1.0-0:arm64 (1:238-3ubuntu2) ... 327s Setting up libpolkit-gobject-1-0:arm64 (124-1ubuntu1) ... 327s Setting up libbpf1:arm64 (1:1.3.0-2build1) ... 327s Setting up libmbim-glib4:arm64 (1.31.2-0ubuntu2) ... 327s Setting up rsync (3.2.7-1build1) ... 329s rsync.service is a disabled or a static unit not running, not starting it. 329s Setting up libudisks2-0:arm64 (2.10.1-6) ... 329s Setting up bolt (0.9.6-2build1) ... 329s bolt.service is a disabled or a static unit not running, not starting it. 329s Setting up libllvm18:arm64 (1:18.1.2-1ubuntu2) ... 329s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 329s Setting up initramfs-tools-bin (0.142ubuntu23) ... 329s Setting up libctf0:arm64 (2.42-4ubuntu1) ... 329s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 329s Setting up python3.11-minimal (3.11.8-1build4) ... 331s Setting up libclang1-18 (1:18.1.2-1ubuntu2) ... 331s Setting up manpages-dev (6.05.01-1) ... 331s Setting up linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 335s Setting up apt-utils (2.7.14) ... 335s Setting up gpg-agent (2.4.4-2ubuntu15) ... 336s Setting up libpython3.12-stdlib:arm64 (3.12.2-4build3) ... 336s Setting up libblockdev-mdraid3:arm64 (3.1.0-1build1) ... 336s Setting up wget (1.21.4-1ubuntu2) ... 336s Setting up linux-image-6.8.0-20-generic (6.8.0-20.20) ... 340s I: /boot/vmlinuz is now a symlink to vmlinuz-6.8.0-20-generic 340s I: /boot/initrd.img is now a symlink to initrd.img-6.8.0-20-generic 340s Setting up libblockdev-swap3:arm64 (3.1.0-1build1) ... 340s Setting up plymouth (24.004.60-1ubuntu6) ... 340s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 340s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 360s flash-kernel: deferring update (trigger activated) 360s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 360s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 361s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ... 361s Setting up libxmlb2:arm64 (0.3.15-1build1) ... 361s Setting up btrfs-progs (6.6.3-1.1build1) ... 361s Setting up libpython3.11-stdlib:arm64 (3.11.8-1build4) ... 361s Setting up python3.12 (3.12.2-4build3) ... 363s Setting up libblockdev-loop3:arm64 (3.1.0-1build1) ... 363s Setting up gpgsm (2.4.4-2ubuntu15) ... 363s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 363s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 363s update-initramfs: deferring update (trigger activated) 364s e2scrub_all.service is a disabled or a static unit not running, not starting it. 365s Setting up libparted2t64:arm64 (3.6-3.1build2) ... 365s Setting up linux-headers-generic (6.8.0-20.20+1) ... 365s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 365s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 365s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ... 365s Setting up libnetplan1:arm64 (1.0-1) ... 365s Setting up man-db (2.12.0-3build4) ... 365s Updating database of manual pages ... 368s man-db.service is a disabled or a static unit not running, not starting it. 368s Setting up libblockdev3:arm64 (3.1.0-1build1) ... 368s Setting up fdisk (2.39.3-9ubuntu2) ... 368s Setting up multipath-tools (0.9.4-5ubuntu6) ... 369s Setting up libjson-glib-1.0-0:arm64 (1.8.0-2build1) ... 369s Setting up libblockdev-part3:arm64 (3.1.0-1build1) ... 369s Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-5ubuntu1) ... 369s Setting up hwdata (0.379-1) ... 369s Setting up libftdi1-2:arm64 (1.5-6build4) ... 369s Setting up perl (5.38.2-3.2) ... 369s Setting up libgprofng0:arm64 (2.42-4ubuntu1) ... 369s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 369s update-initramfs: deferring update (trigger activated) 369s Setting up libfreetype6:arm64 (2.13.2+dfsg-1build2) ... 369s Setting up gir1.2-girepository-2.0:arm64 (1.79.1-1ubuntu6) ... 369s Setting up dbus (1.14.10-4ubuntu2) ... 369s A reboot is required to replace the running dbus-daemon. 369s Please reboot the system when convenient. 370s Setting up shared-mime-info (2.4-1build1) ... 371s Setting up libgssapi-krb5-2:arm64 (1.20.1-6ubuntu1) ... 371s Setting up ftp (20230507-2build1) ... 371s Setting up keyboxd (2.4.4-2ubuntu15) ... 371s Setting up libdpkg-perl (1.22.6ubuntu5) ... 371s Setting up libsasl2-2:arm64 (2.1.28+dfsg1-5ubuntu1) ... 371s Setting up libssh-4:arm64 (0.10.6-2build1) ... 371s Setting up ieee-data (20220827.1) ... 371s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu1) ... 371s Setting up libpam-systemd:arm64 (255.4-1ubuntu5) ... 371s Setting up libpolkit-agent-1-0:arm64 (124-1ubuntu1) ... 371s Setting up libc6-dev:arm64 (2.39-0ubuntu6) ... 371s Setting up libgpgme11t64:arm64 (1.18.0-4.1ubuntu3) ... 371s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu1) ... 371s Setting up linux-image-virtual (6.8.0-20.20+1) ... 371s Setting up netplan-generator (1.0-1) ... 371s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 371s Setting up initramfs-tools-core (0.142ubuntu23) ... 371s Setting up libclang-cpp18 (1:18.1.2-1ubuntu2) ... 371s Setting up libbpfcc:arm64 (0.29.1+ds-1ubuntu4) ... 371s Setting up linux-tools-common (6.8.0-20.20) ... 371s Setting up libarchive13t64:arm64 (3.7.2-1.1ubuntu2) ... 371s Setting up libldap2:arm64 (2.6.7+dfsg-1~exp1ubuntu6) ... 371s Setting up libpython3-stdlib:arm64 (3.12.2-0ubuntu1) ... 371s Setting up systemd-resolved (255.4-1ubuntu5) ... 372s Setting up python3.11 (3.11.8-1build4) ... 374s Setting up linux-image-generic (6.8.0-20.20+1) ... 374s Setting up telnet (0.17+2.5-3ubuntu3) ... 374s Setting up initramfs-tools (0.142ubuntu23) ... 374s update-initramfs: deferring update (trigger activated) 374s Setting up linux-headers-virtual (6.8.0-20.20+1) ... 374s Setting up linux-generic (6.8.0-20.20+1) ... 374s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu8) ... 374s Setting up bpftrace (0.20.2-1ubuntu1) ... 374s Setting up bind9-libs:arm64 (1:9.18.24-0ubuntu3) ... 374s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 374s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 374s Setting up iproute2 (6.1.0-1ubuntu5) ... 375s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 375s Setting up libgusb2:arm64 (0.4.8-1build1) ... 375s Setting up libcurl3t64-gnutls:arm64 (8.5.0-2ubuntu8) ... 375s Setting up parted (3.6-3.1build2) ... 375s Setting up binutils-aarch64-linux-gnu (2.42-4ubuntu1) ... 375s Setting up libqmi-glib5:arm64 (1.35.2-0ubuntu1) ... 375s Setting up linux-tools-6.8.0-20 (6.8.0-20.20) ... 375s Setting up python3 (3.12.2-0ubuntu1) ... 375s Setting up binutils (2.42-4ubuntu1) ... 375s Setting up libjcat1:arm64 (0.2.0-2build2) ... 375s Setting up dpkg-dev (1.22.6ubuntu5) ... 375s Setting up linux-virtual (6.8.0-20.20+1) ... 375s Setting up dirmngr (2.4.4-2ubuntu15) ... 376s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 376s Setting up linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 376s Setting up python3-cryptography (41.0.7-4build2) ... 376s Setting up python3-gi (3.47.0-3build1) ... 376s Setting up libgd3:arm64 (2.3.3-9ubuntu3) ... 376s Setting up python3-typing-extensions (4.10.0-1) ... 377s Setting up lsof (4.95.0-1build2) ... 377s Setting up python3-pyrsistent:arm64 (0.20.0-1build1) ... 377s Setting up python3-netaddr (0.8.0-2ubuntu1) ... 377s Setting up libnsl2:arm64 (1.3.0-3build2) ... 377s Setting up gnupg (2.4.4-2ubuntu15) ... 377s Setting up python3-netplan (1.0-1) ... 377s Setting up curl (8.5.0-2ubuntu8) ... 377s Setting up libvolume-key1:arm64 (0.3.12-7build1) ... 377s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 377s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 378s Setting up python3-bpfcc (0.29.1+ds-1ubuntu4) ... 378s Setting up libc-devtools (2.39-0ubuntu6) ... 378s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 379s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 379s python3.12: can't get files for byte-compilation 379s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 379s Setting up python3-dbus (1.3.2-5build2) ... 379s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 380s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 380s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 381s Replacing config file /etc/ssh/sshd_config with new version 383s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 386s Setting up libblockdev-crypto3:arm64 (3.1.0-1build1) ... 386s Setting up python3-gdbm:arm64 (3.12.2-3ubuntu1.1) ... 386s Setting up python3-apt (2.7.7) ... 386s Setting up libfwupd2:arm64 (1.9.15-2) ... 386s Setting up python3-yaml (6.0.1-2build1) ... 387s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 387s Setting up netplan.io (1.0-1) ... 387s Setting up grub-common (2.12-1ubuntu5) ... 387s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 388s Setting up bpfcc-tools (0.29.1+ds-1ubuntu4) ... 388s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 388s Setting up ubuntu-pro-client (31.2.2) ... 391s Setting up fwupd (1.9.15-2) ... 392s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 392s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 393s Setting up ubuntu-pro-client-l10n (31.2.2) ... 393s Setting up udisks2 (2.10.1-6) ... 394s Setting up grub2-common (2.12-1ubuntu5) ... 394s Processing triggers for ufw (0.36.2-5) ... 394s Processing triggers for debianutils (5.17) ... 394s Processing triggers for install-info (7.1-3build1) ... 394s Processing triggers for libc-bin (2.39-0ubuntu6) ... 394s Processing triggers for linux-image-6.8.0-20-generic (6.8.0-20.20) ... 394s /etc/kernel/postinst.d/initramfs-tools: 394s update-initramfs: Generating /boot/initrd.img-6.8.0-20-generic 394s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 413s flash-kernel: deferring update (trigger activated) 413s /etc/kernel/postinst.d/zz-flash-kernel: 413s flash-kernel: deferring update (trigger activated) 413s /etc/kernel/postinst.d/zz-update-grub: 413s Sourcing file `/etc/default/grub' 413s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 413s Generating grub configuration file ... 414s Found linux image: /boot/vmlinuz-6.8.0-20-generic 414s Found initrd image: /boot/initrd.img-6.8.0-20-generic 414s Found linux image: /boot/vmlinuz-6.8.0-11-generic 414s Found initrd image: /boot/initrd.img-6.8.0-11-generic 414s Warning: os-prober will not be executed to detect other bootable partitions. 414s Systems on them will not be added to the GRUB boot configuration. 414s Check GRUB_DISABLE_OS_PROBER documentation entry. 414s Adding boot menu entry for UEFI Firmware Settings ... 414s done 414s Processing triggers for flash-kernel (3.107ubuntu6) ... 415s System running in EFI mode, skipping. 415s Processing triggers for initramfs-tools (0.142ubuntu23) ... 415s update-initramfs: Generating /boot/initrd.img-6.8.0-20-generic 415s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 434s System running in EFI mode, skipping. 437s Reading package lists... 437s Building dependency tree... 437s Reading state information... 438s The following packages will be REMOVED: 438s libaio1* libnetplan0* python3-distutils* python3-lib2to3* 439s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 439s After this operation, 1482 kB disk space will be freed. 439s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123468 files and directories currently installed.) 439s Removing libaio1:arm64 (0.3.113-5) ... 439s Removing libnetplan0:arm64 (0.107.1-3) ... 439s Removing python3-distutils (3.12.2-3ubuntu1.1) ... 439s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ... 439s Processing triggers for libc-bin (2.39-0ubuntu6) ... 440s autopkgtest [19:12:26]: rebooting testbed after setup commands that affected boot 792s autopkgtest [19:18:18]: testbed running kernel: Linux 6.8.0-20-generic #20-Ubuntu SMP PREEMPT_DYNAMIC Mon Mar 18 11:57:27 UTC 2024 794s autopkgtest [19:18:20]: @@@@@@@@@@@@@@@@@@@@ apt-source samtools 797s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe samtools 1.19.2-1build1 (dsc) [2398 B] 797s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe samtools 1.19.2-1build1 (tar) [5666 kB] 797s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe samtools 1.19.2-1build1 (diff) [21.9 kB] 798s gpgv: Signature made Fri Mar 22 16:54:57 2024 UTC 798s gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 798s gpgv: issuer "juliank@ubuntu.com" 798s gpgv: Can't check signature: No public key 798s dpkg-source: warning: cannot verify inline signature for ./samtools_1.19.2-1build1.dsc: no acceptable signature found 798s autopkgtest [19:18:24]: testing package samtools version 1.19.2-1build1 798s autopkgtest [19:18:24]: build not needed 799s autopkgtest [19:18:25]: test run-unit-test: preparing testbed 801s Reading package lists... 801s Building dependency tree... 801s Reading state information... 802s Starting pkgProblemResolver with broken count: 0 802s Starting 2 pkgProblemResolver with broken count: 0 802s Done 803s The following additional packages will be installed: 803s libhts3t64 libhtscodecs2 samtools samtools-test tabix 803s Suggested packages: 803s cwltool 803s Recommended packages: 803s libio-pty-perl 803s The following NEW packages will be installed: 803s autopkgtest-satdep libhts3t64 libhtscodecs2 samtools samtools-test tabix 803s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 803s Need to get 4007 kB/4008 kB of archives. 803s After this operation, 23.1 MB of additional disk space will be used. 803s Get:1 /tmp/autopkgtest.l28Yhi/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 803s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 libhtscodecs2 arm64 1.6.0-1 [78.1 kB] 803s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhts3t64 arm64 1.19+ds-1.1build2 [429 kB] 803s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 samtools arm64 1.19.2-1build1 [584 kB] 803s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 samtools-test all 1.19.2-1build1 [2401 kB] 804s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 tabix arm64 1.19+ds-1.1build2 [515 kB] 804s Fetched 4007 kB in 1s (5055 kB/s) 804s Selecting previously unselected package libhtscodecs2:arm64. 804s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 123244 files and directories currently installed.) 804s Preparing to unpack .../0-libhtscodecs2_1.6.0-1_arm64.deb ... 804s Unpacking libhtscodecs2:arm64 (1.6.0-1) ... 804s Selecting previously unselected package libhts3t64:arm64. 804s Preparing to unpack .../1-libhts3t64_1.19+ds-1.1build2_arm64.deb ... 804s Unpacking libhts3t64:arm64 (1.19+ds-1.1build2) ... 804s Selecting previously unselected package samtools. 804s Preparing to unpack .../2-samtools_1.19.2-1build1_arm64.deb ... 804s Unpacking samtools (1.19.2-1build1) ... 805s Selecting previously unselected package samtools-test. 805s Preparing to unpack .../3-samtools-test_1.19.2-1build1_all.deb ... 805s Unpacking samtools-test (1.19.2-1build1) ... 805s Selecting previously unselected package tabix. 805s Preparing to unpack .../4-tabix_1.19+ds-1.1build2_arm64.deb ... 805s Unpacking tabix (1.19+ds-1.1build2) ... 805s Selecting previously unselected package autopkgtest-satdep. 805s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 805s Unpacking autopkgtest-satdep (0) ... 805s Setting up libhtscodecs2:arm64 (1.6.0-1) ... 805s Setting up libhts3t64:arm64 (1.19+ds-1.1build2) ... 805s Setting up samtools-test (1.19.2-1build1) ... 805s Setting up tabix (1.19+ds-1.1build2) ... 805s Setting up samtools (1.19.2-1build1) ... 805s Setting up autopkgtest-satdep (0) ... 805s Processing triggers for man-db (2.12.0-3build4) ... 806s Processing triggers for libc-bin (2.39-0ubuntu6) ... 810s (Reading database ... 124081 files and directories currently installed.) 810s Removing autopkgtest-satdep (0) ... 811s autopkgtest [19:18:37]: test run-unit-test: [----------------------- 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -e test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -r 17:1000-1500 test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -r 17:1000-1500 -e test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -@ 2 test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -@ 2 -e test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -@ 2 -r 17:1000-1500 test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s test_reference: 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reference -@ 2 -r 17:1000-1500 -e test/reference/mpileup.1.tmp.cram 812s .. ok 812s 812s bgzip -c -b 65272 -s 5 /tmp/EgVqtvPWm0/bgzip.dat.gz 812s .. ok 812s 812s bgzip -c -b 979200 -s 6 /tmp/EgVqtvPWm0/bgzip.dat.gz 812s .. ok 812s 812s bgzip -c -b 652804 -s 6 /tmp/EgVqtvPWm0/bgzip.dat.gz 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa 3:11-13 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa.gz 3:11-13 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa 2:998-1003 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa.gz 2:998-1003 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa 1:100-104 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa.gz 1:100-104 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa 1:99998-100007 | grep -v '^>' 812s .. ok 812s 812s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools faidx /tmp/EgVqtvPWm0/faidx.fa.gz 1:99998-100007 | grep -v '^>' 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq 3:11-13 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq.gz 3:11-13 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq 2:998-1003 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq.gz 2:998-1003 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq 1:100-104 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq.gz 1:100-104 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq 1:99998-100007 813s .. ok 813s 813s .. ok 813s 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fqidx /tmp/EgVqtvPWm0/fqidx.fq.gz 1:99998-100007 813s .. ok 813s 813s .. ok 813s 813s test_dict: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/dict.fa 813s .. ok 813s 813s test_dict: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/EgVqtvPWm0/dict.fa.gz 813s .. ok 813s 813s test_dict: 813s cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/dict.fa | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz 813s .. ok 813s 813s test_dict: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools dict -AH < /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/dict.alias.fa 813s .. ok 813s 813s test_dict: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools dict -H -l /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/dict.alt < /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/dict.alias.fa 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view /tmp/EgVqtvPWm0/large_chrom.bam ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view /tmp/EgVqtvPWm0/large_chrom.bam ref2:1-541556283 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam && cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/EgVqtvPWm0/test_input_1_b.bam.bai ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/EgVqtvPWm0/test_input_1_b.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -O sam - -X -cp -R ref2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam.bai /tmp/EgVqtvPWm0/test_input_1_b.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/EgVqtvPWm0/test_input_1_b_opt.bam.bai ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam && cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam.bai ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -c /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam /tmp/EgVqtvPWm0/auto_indexed.csi && cat /tmp/EgVqtvPWm0/auto_indexed.csi 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.cram /tmp/EgVqtvPWm0/auto_indexed.crai && cat /tmp/EgVqtvPWm0/auto_indexed.crai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -c /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.sam /tmp/EgVqtvPWm0/auto_indexed.csi && cat /tmp/EgVqtvPWm0/auto_indexed.csi 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -@ 2 /tmp/EgVqtvPWm0/large_chrom.bam ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -@ 2 /tmp/EgVqtvPWm0/large_chrom.bam ref2:1-541556283 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -@ 2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam && cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -@ 2 -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/EgVqtvPWm0/test_input_1_b.bam.bai ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -@ 2 -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/EgVqtvPWm0/test_input_1_b.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -O sam - -X -cp -R ref2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam.bai /tmp/EgVqtvPWm0/test_input_1_b.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -@ 2 -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/EgVqtvPWm0/test_input_1_b_opt.bam.bai ref2 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -@ 2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -@ 2 -M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam && cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam.bai 813s .. ok 813s 813s test_index: 813s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -@ 2 -X /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam.bai ref2 813s .. ok 813s 814s test_index: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -@ 2 -c /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam /tmp/EgVqtvPWm0/auto_indexed.csi && cat /tmp/EgVqtvPWm0/auto_indexed.csi 814s .. ok 814s 814s test_index: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -@ 2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.cram /tmp/EgVqtvPWm0/auto_indexed.crai && cat /tmp/EgVqtvPWm0/auto_indexed.crai 814s .. ok 814s 814s test_index: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools index -@ 2 -c /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.sam /tmp/EgVqtvPWm0/auto_indexed.csi && cat /tmp/EgVqtvPWm0/auto_indexed.csi 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup -b /tmp/EgVqtvPWm0/mpileup.bam.list -f /tmp/EgVqtvPWm0/mpileup.ref.fa.gz -r17:100-150 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup -b /tmp/EgVqtvPWm0/mpileup.cram.list -f /tmp/EgVqtvPWm0/mpileup.ref.fa.gz -r17:100-150 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup -b /tmp/EgVqtvPWm0/mpileup.bam.urllist -f /tmp/EgVqtvPWm0/mpileup.ref.fa.gz -r17:100-150 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup -b /tmp/EgVqtvPWm0/mpileup.cram.urllist -f /tmp/EgVqtvPWm0/mpileup.ref.fa.gz -r17:100-150 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup -B --ff 0x14 -f /tmp/EgVqtvPWm0/mpileup.ref.fa.gz -r17:1050-1060 /tmp/EgVqtvPWm0/mpileup.1.bam | grep -v mpileup 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup -B --ff 0x14 -f /tmp/EgVqtvPWm0/mpileup.ref.fa.gz -r17:1050-1060 /tmp/EgVqtvPWm0/mpileup.1.cram | grep -v mpileup 814s .. ok 814s 814s test_mpileup: 814s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools mpileup /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/mpileup/overlap.bam | grep 128814202 814s ./test/test.pl: no IO::Pty module or can't open pty; skipping usage tests 814s .. ok 814s 814s test_usage: 814s samtools 814s test_view: 816s Generating test data file .................. done 816s 1: SAM -> BAM -> SAM .. ok 816s 816s 2: SAM -> uncompressed BAM .. ok 816s 816s 3: uncompressed BAM -> SAM and compare .. ok 816s 816s 4: SAM -> fast compressed BAM .. ok 816s 816s 5: fast compressed BAM -> SAM and compare .. ok 816s 817s 6: SAM -> CRAM -> SAM (UR header tags) .. ok 817s 817s 7: SAM -> CRAM -> SAM (M5 header tags) .. ok 817s 818s 8: BAM -> CRAM with UR -> SAM .. ok 818s 818s 9: SAM -> BAM (M5 header tags) .. ok 818s 818s 10: SAM -> BAM -> CRAM -> SAM (M5 header tags) .. ok 818s 818s 11: CRAM -> BAM with UR .. ok 818s 818s 12: CRAM -> BAM with M5 .. ok 818s 818s 13: SAM -> SAM via stdout .. ok 818s 818s 14: SAM -> BAM via stdout .. ok 818s 819s 15: SAM -> CRAM via stdout .. ok 819s 819s 16: SAM from stdin -> SAM .. ok 819s 819s 17: BAM from stdin -> SAM .. ok 819s 820s 18: CRAM from stdin -> SAM .. ok 820s 820s 19: samtools view -H (SAM input) .. ok 820s 820s 20: samtools view -H (BAM input) .. ok 820s 820s 21: samtools view -H (CRAM input) .. ok 820s 820s 22: No headers (SAM input) .. ok 820s 820s 23: No headers (BAM input) .. ok 820s 820s 24: No headers (CRAM input) .. ok 820s 820s 25: Filter -f 128 (SAM input) .. ok 820s 820s 26: Count -f 128 (SAM input) .. ok 820s 820s 27: Filter -f 128 (BAM input) .. ok 820s 820s 28: Count -f 128 (BAM input) .. ok 820s 821s 29: Filter -f 128 (CRAM input) .. ok 821s 821s 30: Count -f 128 (CRAM input) .. ok 821s 821s 31: Filter -F 128 (SAM input) .. ok 821s 821s 32: Count -F 128 (SAM input) .. ok 821s 821s 33: Filter -F 128 (BAM input) .. ok 821s 821s 34: Count -F 128 (BAM input) .. ok 821s 821s 35: Filter -F 128 (CRAM input) .. ok 821s 821s 36: Count -F 128 (CRAM input) .. ok 821s 821s 37: Filter -F 128 -f 2 (SAM input) .. ok 821s 821s 38: Count -F 128 -f 2 (SAM input) .. ok 821s 821s 39: Filter -F 128 -f 2 (BAM input) .. ok 821s 821s 40: Count -F 128 -f 2 (BAM input) .. ok 821s 822s 41: Filter -F 128 -f 2 (CRAM input) .. ok 822s 822s 42: Count -F 128 -f 2 (CRAM input) .. ok 822s 822s 43: Filter -r grp2 (SAM input) .. ok 822s 822s 44: Count -r grp2 (SAM input) .. ok 822s 822s 45: Filter -r grp2 (BAM input) .. ok 822s 822s 46: Count -r grp2 (BAM input) .. ok 822s 822s 47: Filter -r grp2 (CRAM input) .. ok 822s 822s 48: Count -r grp2 (CRAM input) .. ok 822s 822s 49: Filter -R /tmp/EgVqtvPWm0/view.001.fogn (SAM input) .. ok 822s 822s 50: Count -R /tmp/EgVqtvPWm0/view.001.fogn (SAM input) .. ok 822s 822s 51: Filter -R /tmp/EgVqtvPWm0/view.001.fogn (BAM input) .. ok 822s 822s 52: Count -R /tmp/EgVqtvPWm0/view.001.fogn (BAM input) .. ok 822s 823s 53: Filter -R /tmp/EgVqtvPWm0/view.001.fogn (CRAM input) .. ok 823s 823s 54: Count -R /tmp/EgVqtvPWm0/view.001.fogn (CRAM input) .. ok 823s 823s 55: Filter -R /tmp/EgVqtvPWm0/view.001.fogn -r grp2 (SAM input).. ok 823s 823s 56: Count -R /tmp/EgVqtvPWm0/view.001.fogn -r grp2 (SAM input).. ok 823s 823s 57: Filter -R /tmp/EgVqtvPWm0/view.001.fogn -r grp2 (BAM input).. ok 823s 823s 58: Count -R /tmp/EgVqtvPWm0/view.001.fogn -r grp2 (BAM input).. ok 823s 823s 59: Filter -R /tmp/EgVqtvPWm0/view.001.fogn -r grp2 (CRAM input).. ok 823s 823s 60: Count -R /tmp/EgVqtvPWm0/view.001.fogn -r grp2 (CRAM input).. ok 823s 823s 61: Filter -r grp2 -R /tmp/EgVqtvPWm0/view.001.fogn (SAM input).. ok 823s 823s 62: Count -r grp2 -R /tmp/EgVqtvPWm0/view.001.fogn (SAM input).. ok 823s 823s 63: Filter -r grp2 -R /tmp/EgVqtvPWm0/view.001.fogn (BAM input).. ok 823s 823s 64: Count -r grp2 -R /tmp/EgVqtvPWm0/view.001.fogn (BAM input).. ok 823s 824s 65: Filter -r grp2 -R /tmp/EgVqtvPWm0/view.001.fogn (CRAM input).. ok 824s 824s 66: Count -r grp2 -R /tmp/EgVqtvPWm0/view.001.fogn (CRAM input).. ok 824s 824s 67: Filter -N /tmp/EgVqtvPWm0/view.001.forn (SAM input) .. ok 824s 824s 68: Count -N /tmp/EgVqtvPWm0/view.001.forn (SAM input) .. ok 824s 824s 69: Filter -N /tmp/EgVqtvPWm0/view.001.forn (BAM input) .. ok 824s 824s 70: Count -N /tmp/EgVqtvPWm0/view.001.forn (BAM input) .. ok 824s 824s 71: Filter -N /tmp/EgVqtvPWm0/view.001.forn (CRAM input) .. ok 824s 824s 72: Count -N /tmp/EgVqtvPWm0/view.001.forn (CRAM input) .. ok 824s 824s 73: Filter -d BC (SAM input) .. ok 824s 824s 74: Count -d BC (SAM input) .. ok 824s 824s 75: Filter -d BC (BAM input) .. ok 824s 824s 76: Count -d BC (BAM input) .. ok 824s 825s 77: Filter -d BC (CRAM input) .. ok 825s 825s 78: Count -d BC (CRAM input) .. ok 825s 825s 79: Filter -d BC:TGCA (SAM input) .. ok 825s 825s 80: Count -d BC:TGCA (SAM input) .. ok 825s 825s 81: Filter -d BC:TGCA (BAM input) .. ok 825s 825s 82: Count -d BC:TGCA (BAM input) .. ok 825s 825s 83: Filter -d BC:TGCA (CRAM input) .. ok 825s 825s 84: Count -d BC:TGCA (CRAM input) .. ok 825s 825s 85: Filter -D BC:/tmp/EgVqtvPWm0/view.001.fobc (SAM input) .. ok 825s 825s 86: Count -D BC:/tmp/EgVqtvPWm0/view.001.fobc (SAM input) .. ok 825s 825s 87: Filter -D BC:/tmp/EgVqtvPWm0/view.001.fobc (BAM input) .. ok 825s 825s 88: Count -D BC:/tmp/EgVqtvPWm0/view.001.fobc (BAM input) .. ok 825s 826s 89: Filter -D BC:/tmp/EgVqtvPWm0/view.001.fobc (CRAM input) .. ok 826s 826s 90: Count -D BC:/tmp/EgVqtvPWm0/view.001.fobc (CRAM input) .. ok 826s 826s 91: Filter -D BC:/tmp/EgVqtvPWm0/view.001.fobc -d BC:TGCA (SAM input).. ok 826s 826s 92: Count -D BC:/tmp/EgVqtvPWm0/view.001.fobc -d BC:TGCA (SAM input).. ok 826s 826s 93: Filter -D BC:/tmp/EgVqtvPWm0/view.001.fobc -d BC:TGCA (BAM input).. ok 826s 826s 94: Count -D BC:/tmp/EgVqtvPWm0/view.001.fobc -d BC:TGCA (BAM input).. ok 826s 826s 95: Filter -D BC:/tmp/EgVqtvPWm0/view.001.fobc -d BC:TGCA (CRAM input).. ok 826s 826s 96: Count -D BC:/tmp/EgVqtvPWm0/view.001.fobc -d BC:TGCA (CRAM input).. ok 826s 826s 97: Filter -d BC:TGCA -D BC:/tmp/EgVqtvPWm0/view.001.fobc (SAM input).. ok 826s 826s 98: Count -d BC:TGCA -D BC:/tmp/EgVqtvPWm0/view.001.fobc (SAM input).. ok 826s 826s 99: Filter -d BC:TGCA -D BC:/tmp/EgVqtvPWm0/view.001.fobc (BAM input).. ok 826s 826s 100: Count -d BC:TGCA -D BC:/tmp/EgVqtvPWm0/view.001.fobc (BAM input).. ok 826s 827s 101: Filter -d BC:TGCA -D BC:/tmp/EgVqtvPWm0/view.001.fobc (CRAM input).. ok 827s 827s 102: Count -d BC:TGCA -D BC:/tmp/EgVqtvPWm0/view.001.fobc (CRAM input).. ok 827s 827s 103: Filter -D RG:/tmp/EgVqtvPWm0/view.001.fogn (SAM input) .. ok 827s 827s 104: Count -D RG:/tmp/EgVqtvPWm0/view.001.fogn (SAM input) .. ok 827s 827s 105: Filter -D RG:/tmp/EgVqtvPWm0/view.001.fogn (BAM input) .. ok 827s 827s 106: Count -D RG:/tmp/EgVqtvPWm0/view.001.fogn (BAM input) .. ok 827s 827s 107: Filter -D RG:/tmp/EgVqtvPWm0/view.001.fogn (CRAM input).. ok 827s 827s 108: Count -D RG:/tmp/EgVqtvPWm0/view.001.fogn (CRAM input) .. ok 827s 827s 109: Filter -d NE:TGCA (SAM input) .. ok 827s 827s 110: Count -d NE:TGCA (SAM input) .. ok 827s 827s 111: Filter -d NE:TGCA (BAM input) .. ok 827s 827s 112: Count -d NE:TGCA (BAM input) .. ok 827s 828s 113: Filter -d NE:TGCA (CRAM input) .. ok 828s 828s 114: Count -d NE:TGCA (CRAM input) .. ok 828s 828s 115: Filter -d TGCA (SAM input) samtools view: Invalid "tag:value" option: "TGCA" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test115.sam -h -d TGCA /tmp/EgVqtvPWm0/view.001.sam --no-PG 828s 828s 828s .. expected failure 828s 828s 116: Count -d TGCA (SAM input) samtools view: Invalid "tag:value" option: "TGCA" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -d TGCA /tmp/EgVqtvPWm0/view.001.sam --no-PG 828s 828s 828s .. expected failure 828s 828s 117: Filter -d TGCA (BAM input) samtools view: Invalid "tag:value" option: "TGCA" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test117.sam -h -d TGCA /tmp/EgVqtvPWm0/view.test001.bam --no-PG 828s 828s 828s .. expected failure 828s 828s 118: Count -d TGCA (BAM input) samtools view: Invalid "tag:value" option: "TGCA" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -d TGCA /tmp/EgVqtvPWm0/view.test001.bam --no-PG 828s 828s 828s .. expected failure 828s 828s 119: Filter -d TGCA (CRAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test119.sam -h -d TGCA /tmp/EgVqtvPWm0/view.test006.cram --no-PG 828s 828s 828s .. expected failure 828s 828s 120: Count -d TGCA (CRAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -d TGCA /tmp/EgVqtvPWm0/view.test006.cram --no-PG 828s 828s 828s .. expected failure 828s 828s 121: Filter -D BClong:/tmp/EgVqtvPWm0/view.001.fobc (SAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test121.sam -h -D BClong:/tmp/EgVqtvPWm0/view.001.fobc /tmp/EgVqtvPWm0/view.001.sam --no-PG 828s 828s 828s .. expected failure 828s 828s 122: Count -D BClong:/tmp/EgVqtvPWm0/view.001.fobc (SAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -D BClong:/tmp/EgVqtvPWm0/view.001.fobc /tmp/EgVqtvPWm0/view.001.sam --no-PG 828s 828s 828s .. expected failure 828s 828s 123: Filter -D BClong:/tmp/EgVqtvPWm0/view.001.fobc (BAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test123.sam -h -D BClong:/tmp/EgVqtvPWm0/view.001.fobc /tmp/EgVqtvPWm0/view.test001.bam --no-PG 828s 828s 828s .. expected failure 828s 828s 124: Count -D BClong:/tmp/EgVqtvPWm0/view.001.fobc (BAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -D BClong:/tmp/EgVqtvPWm0/view.001.fobc /tmp/EgVqtvPWm0/view.test001.bam --no-PG 828s 828s 828s .. expected failure 828s 828s 125: Filter -D BClong:/tmp/EgVqtvPWm0/view.001.fobc (CRAM input)samtools view: Invalid "tag:value" option: "TGCA" 828s samtools view: Invalid "tag:value" option: "TGCA" 828s samtools view: Invalid "tag:file" option: "BClong:/tmp/EgVqtvPWm0/view.001.fobc" 828s samtools view: Invalid "tag:file" option: "BClong:/tmp/EgVqtvPWm0/view.001.fobc" 828s samtools view: Invalid "tag:file" option: "BClong:/tmp/EgVqtvPWm0/view.001.fobc" 828s samtools view: Invalid "tag:file" option: "BClong:/tmp/EgVqtvPWm0/view.001.fobc" 828s samtools view: Invalid "tag:file" option: "BClong:/tmp/EgVqtvPWm0/view.001.fobc" 828s samtools view: Invalid "tag:file" option: "BClong:/tmp/EgVqtvPWm0/view.001.fobc" 828s samtools view: Different tag "BC" was specified before: "RG:grp2" 828s samtools view: Different tag "BC" was specified before: "RG:grp2" 828s samtools view: Different tag "BC" was specified before: "RG:grp2" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test125.sam -h -D BClong:/tmp/EgVqtvPWm0/view.001.fobc /tmp/EgVqtvPWm0/view.test006.cram --no-PG 828s 828s 828s .. expected failure 828s 828s 126: Count -D BClong:/tmp/EgVqtvPWm0/view.001.fobc (CRAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -D BClong:/tmp/EgVqtvPWm0/view.001.fobc /tmp/EgVqtvPWm0/view.test006.cram --no-PG 828s 828s 828s .. expected failure 828s 828s 127: Filter -d BC:ACGT -d RG:grp2 (SAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/EgVqtvPWm0/view.001.sam --no-PG 828s 828s 828s .. expected failure 828s 828s 128: Count -d BC:ACGT -d RG:grp2 (SAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/EgVqtvPWm0/view.001.sam --no-PG 828s 828s 828s .. expected failure 828s 828s 129: Filter -d BC:ACGT -d RG:grp2 (BAM input) Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/EgVqtvPWm0/view.test001.bam --no-PG 828s 828s 828s .. expected failure 828s 828s 130: Count -d BC:ACGT -d RG:grp2 (BAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/EgVqtvPWm0/view.test001.bam --no-PG 828s 828s 828s .. expected failure 828s 828s 131: Filter -d BC:ACGT -d RG:grp2 (CRAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -o /tmp/EgVqtvPWm0/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/EgVqtvPWm0/view.test006.cram --no-PG 828s 828s 828s .. expected failure 828s 828s 132: Count -d BC:ACGT -d RG:grp2 (CRAM input) samtools view: Different tag "BC" was specified before: "RG:grp2" 828s Failed command: 828s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/EgVqtvPWm0/view.test006.cram --no-PG 828s 828s 828s .. expected failure 828s 828s 133: Filter -d NM:13 (SAM input) .. ok 828s 828s 134: Count -d NM:13 (SAM input) .. ok 828s 828s 135: Filter -d NM:13 (BAM input) .. ok 828s 828s 136: Count -d NM:13 (BAM input) .. ok 828s 828s 137: Filter -d NM:13 (CRAM input) .. ok 828s 829s 138: Count -d NM:13 (CRAM input) .. ok 829s 829s 139: Filter -d ab:z (SAM input) .. ok 829s 829s 140: Count -d ab:z (SAM input) .. ok 829s 829s 141: Filter -d ab:z (BAM input) .. ok 829s 829s 142: Count -d ab:z (BAM input) .. ok 829s 829s 143: Filter -d ab:z (CRAM input) .. ok 829s 829s 144: Count -d ab:z (CRAM input) .. ok 829s 829s 145: Filter -l Library 2 (SAM input) .. ok 829s 829s 146: Count -l Library 2 (SAM input) .. ok 829s 829s 147: Filter -l Library 2 (BAM input) .. ok 829s 829s 148: Count -l Library 2 (BAM input) .. ok 829s 830s 149: Filter -l Library 2 (CRAM input) .. ok 830s 830s 150: Count -l Library 2 (CRAM input) .. ok 830s 830s 151: Filter -l Library 3 (SAM input) .. ok 830s 830s 152: Count -l Library 3 (SAM input) .. ok 830s 830s 153: Filter -l Library 3 (BAM input) .. ok 830s 830s 154: Count -l Library 3 (BAM input) .. ok 830s 830s 155: Filter -l Library 3 (CRAM input) .. ok 830s 830s 156: Count -l Library 3 (CRAM input) .. ok 830s 830s 157: Filter -q 50 (SAM input) .. ok 830s 830s 158: Count -q 50 (SAM input) .. ok 830s 830s 159: Filter -q 50 (BAM input) .. ok 830s 830s 160: Count -q 50 (BAM input) .. ok 830s 831s 161: Filter -q 50 (CRAM input) .. ok 831s 831s 162: Count -q 50 (CRAM input) .. ok 831s 831s 163: Filter -q 99 (SAM input) .. ok 831s 831s 164: Count -q 99 (SAM input) .. ok 831s 831s 165: Filter -q 99 (BAM input) .. ok 831s 831s 166: Count -q 99 (BAM input) .. ok 831s 831s 167: Filter -q 99 (CRAM input) .. ok 831s 831s 168: Count -q 99 (CRAM input) .. ok 831s 831s 169: Filter -q 100 (SAM input) .. ok 831s 831s 170: Count -q 100 (SAM input) .. ok 831s 831s 171: Filter -q 100 (BAM input) .. ok 831s 831s 172: Count -q 100 (BAM input) .. ok 831s 832s 173: Filter -q 100 (CRAM input) .. ok 832s 832s 174: Count -q 100 (CRAM input) .. ok 832s 832s 175: Filter -x fa (SAM input) .. ok 832s 832s 176: Count -x fa (SAM input) .. ok 832s 832s 177: Filter -x fa (BAM input) .. ok 832s 832s 178: Count -x fa (BAM input) .. ok 832s 832s 179: Filter -x fa (CRAM input) .. ok 832s 832s 180: Count -x fa (CRAM input) .. ok 832s 832s 181: Filter -x fa -x ha (SAM input) .. ok 832s 832s 182: Count -x fa -x ha (SAM input) .. ok 832s 832s 183: Filter -x fa -x ha (BAM input) .. ok 832s 832s 184: Count -x fa -x ha (BAM input) .. ok 832s 833s 185: Filter -x fa -x ha (CRAM input) .. ok 833s 833s 186: Count -x fa -x ha (CRAM input) .. ok 833s 833s 187: Filter -x fa,ha (SAM input) .. ok 833s 833s 188: Count -x fa,ha (SAM input) .. ok 833s 833s 189: Filter -x fa,ha (BAM input) .. ok 833s 833s 190: Count -x fa,ha (BAM input) .. ok 833s 833s 191: Filter -x fa,ha (CRAM input) .. ok 833s 833s 192: Count -x fa,ha (CRAM input) .. ok 833s 833s 193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 833s 833s 194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 833s 833s 195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 833s 833s 196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 833s 834s 197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 834s 834s 198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 834s 834s 199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 834s 834s 200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok 834s 834s 201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 834s 834s 202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok 834s 834s 203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 834s 834s 204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok 834s 834s 205: Filter -x fa -r grp2 (SAM input) .. ok 834s 834s 206: Count -x fa -r grp2 (SAM input) .. ok 834s 834s 207: Filter -x fa -r grp2 (BAM input) .. ok 834s 834s 208: Count -x fa -r grp2 (BAM input) .. ok 834s 835s 209: Filter -x fa -r grp2 (CRAM input) .. ok 835s 835s 210: Count -x fa -r grp2 (CRAM input) .. ok 835s 835s 211: Filter -x RG -r grp2 (SAM input) .. ok 835s 835s 212: Count -x RG -r grp2 (SAM input) .. ok 835s 835s 213: Filter -x RG -r grp2 (BAM input) .. ok 835s 835s 214: Count -x RG -r grp2 (BAM input) .. ok 835s 835s 215: Filter -x RG -r grp2 (CRAM input) .. ok 835s 835s 216: Count -x RG -r grp2 (CRAM input) .. ok 835s 835s 217: Filter -m 10 (SAM input) .. ok 835s 835s 218: Count -m 10 (SAM input) .. ok 835s 835s 219: Filter -m 10 (BAM input) .. ok 835s 835s 220: Count -m 10 (BAM input) .. ok 835s 836s 221: Filter -m 10 (CRAM input) .. ok 836s 836s 222: Count -m 10 (CRAM input) .. ok 836s 836s 223: Filter -m 11 (SAM input) .. ok 836s 836s 224: Count -m 11 (SAM input) .. ok 836s 836s 225: Filter -m 11 (BAM input) .. ok 836s 836s 226: Count -m 11 (BAM input) .. ok 836s 837s 227: Filter -m 11 (CRAM input) .. ok 837s 837s 228: Count -m 11 (CRAM input) .. ok 837s 837s 229: Filter -m 15 (SAM input) .. ok 837s 837s 230: Count -m 15 (SAM input) .. ok 837s 837s 231: Filter -m 15 (BAM input) .. ok 837s 837s 232: Count -m 15 (BAM input) .. ok 837s 838s 233: Filter -m 15 (CRAM input) .. ok 838s 838s 234: Count -m 15 (CRAM input) .. ok 838s 838s 235: Filter -m 16 (SAM input) .. ok 838s 838s 236: Count -m 16 (SAM input) .. ok 838s 838s 237: Filter -m 16 (BAM input) .. ok 838s 838s 238: Count -m 16 (BAM input) .. ok 838s 838s 239: Filter -m 16 (CRAM input) .. ok 838s 839s 240: Count -m 16 (CRAM input) .. ok 839s 839s 241: Filter -e !(flag & 128) && (flag & 2) (SAM input) .. ok 839s 839s 242: Count -e !(flag & 128) && (flag & 2) (SAM input) .. ok 839s 839s 243: Filter -e !(flag & 128) && (flag & 2) (BAM input) .. ok 839s 839s 244: Count -e !(flag & 128) && (flag & 2) (BAM input) .. ok 839s 839s 245: Filter -e !(flag & 128) && (flag & 2) (CRAM input) .. ok 839s 840s 246: Count -e !(flag & 128) && (flag & 2) (CRAM input) .. ok 840s 840s 247: Filter -e [BC] (SAM input) .. ok 840s 840s 248: Count -e [BC] (SAM input) .. ok 840s 840s 249: Filter -e [BC] (BAM input) .. ok 840s 840s 250: Count -e [BC] (BAM input) .. ok 840s 840s 251: Filter -e [BC] (CRAM input) .. ok 840s 841s 252: Count -e [BC] (CRAM input) .. ok 841s 841s 253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok 841s 841s 254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok 841s 841s 255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok 841s 841s 256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok 841s 841s 257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok 841s 842s 258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok 842s 842s 259: Filter -e mapq >= 50 (SAM input) .. ok 842s 842s 260: Count -e mapq >= 50 (SAM input) .. ok 842s 842s 261: Filter -e mapq >= 50 (BAM input) .. ok 842s 842s 262: Count -e mapq >= 50 (BAM input) .. ok 842s 842s 263: Filter -e mapq >= 50 (CRAM input) .. ok 842s 843s 264: Count -e mapq >= 50 (CRAM input) .. ok 843s 843s 265: Filter -e mapq >= 99 (SAM input) .. ok 843s 843s 266: Count -e mapq >= 99 (SAM input) .. ok 843s 843s 267: Filter -e mapq >= 99 (BAM input) .. ok 843s 843s 268: Count -e mapq >= 99 (BAM input) .. ok 843s 843s 269: Filter -e mapq >= 99 (CRAM input) .. ok 843s 844s 270: Count -e mapq >= 99 (CRAM input) .. ok 844s 844s 271: Filter -e mapq >= 100 (SAM input) .. ok 844s 844s 272: Count -e mapq >= 100 (SAM input) .. ok 844s 844s 273: Filter -e mapq >= 100 (BAM input) .. ok 844s 844s 274: Count -e mapq >= 100 (BAM input) .. ok 844s 844s 275: Filter -e mapq >= 100 (CRAM input) .. ok 844s 845s 276: Count -e mapq >= 100 (CRAM input) .. ok 845s 845s 277: 1bp reads file SAM -> BAM -> SAM .. ok 845s 846s 278: 1bp reads file SAM -> CRAM -> SAM .. ok 846s 846s 278: Region Z (BAM input) .. ok 846s 846s 279: Count Z (BAM input) .. ok 846s 846s 280: Region Z (CRAM input) .. ok 846s 846s 281: Count Z (CRAM input) .. ok 846s 846s 282: Region Z:30 (BAM input) .. ok 846s 846s 283: Count Z:30 (BAM input) .. ok 846s 847s 284: Region Z:30 (CRAM input) .. ok 847s 847s 285: Count Z:30 (CRAM input) .. ok 847s 847s 286: Region Z:20-40 (BAM input) .. ok 847s 847s 287: Count Z:20-40 (BAM input) .. ok 847s 847s 288: Region Z:20-40 (CRAM input) .. ok 847s 847s 289: Count Z:20-40 (CRAM input) .. ok 847s 847s 290: Region ref1 (BAM input) .. ok 847s 847s 291: Count ref1 (BAM input) .. ok 847s 848s 292: Region ref1 (CRAM input) .. ok 848s 848s 293: Count ref1 (CRAM input) .. ok 848s 848s 294: Region ref1:15 (BAM input) .. ok 848s 848s 295: Count ref1:15 (BAM input) .. ok 848s 848s 296: Region ref1:15 (CRAM input) .. ok 848s 848s 297: Count ref1:15 (CRAM input) .. ok 848s 848s 298: Region ref1:15-45 (BAM input) .. ok 848s 848s 299: Count ref1:15-45 (BAM input) .. ok 848s 849s 300: Region ref1:15-45 (CRAM input) .. ok 849s 849s 301: Count ref1:15-45 (CRAM input) .. ok 849s 849s 302: Region ref1:15-45 ref2 (BAM input) .. ok 849s 849s 303: Count ref1:15-45 ref2 (BAM input) .. ok 849s 849s 304: Region ref1:15-45 ref2 (CRAM input) .. ok 849s 849s 305: Count ref1:15-45 ref2 (CRAM input) .. ok 849s 849s 306: Region ref1:15-45 ref2:16 (BAM input) .. ok 849s 849s 307: Count ref1:15-45 ref2:16 (BAM input) .. ok 849s 850s 308: Region ref1:15-45 ref2:16 (CRAM input) .. ok 850s 850s 309: Count ref1:15-45 ref2:16 (CRAM input) .. ok 850s 850s 310: Region ref1:15-45 ref2:16-31 (BAM input) .. ok 850s 850s 311: Count ref1:15-45 ref2:16-31 (BAM input) .. ok 850s 850s 312: Region ref1:15-45 ref2:16-31 (CRAM input) .. ok 850s 850s 313: Count ref1:15-45 ref2:16-31 (CRAM input) .. ok 850s 850s 314: Region ref1:15-15 ref1:45-45 (BAM input) .. ok 850s 850s 315: Count ref1:15-15 ref1:45-45 (BAM input) .. ok 850s 851s 316: Region ref1:15-15 ref1:45-45 (CRAM input) .. ok 851s 851s 317: Count ref1:15-15 ref1:45-45 (CRAM input) .. ok 851s 851s 318: Region -f 128 ref1 (BAM input) .. ok 851s 851s 319: Count -f 128 ref1 (BAM input) .. ok 851s 851s 320: Region -f 128 ref1 (CRAM input) .. ok 851s 851s 321: Count -f 128 ref1 (CRAM input) .. ok 851s 851s 322: Region -q 50 ref1:15-45 (BAM input) .. ok 851s 851s 323: Count -q 50 ref1:15-45 (BAM input) .. ok 851s 852s 324: Region -q 50 ref1:15-45 (CRAM input) .. ok 852s 852s 325: Count -q 50 ref1:15-45 (CRAM input) .. ok 852s 852s 326: Region -r grp2 ref1:15-45 (BAM input) .. ok 852s 852s 327: Count -r grp2 ref1:15-45 (BAM input) .. ok 852s 852s 328: Region -r grp2 ref1:15-45 (CRAM input) .. ok 852s 852s 329: Count -r grp2 ref1:15-45 (CRAM input) .. ok 852s 852s 330: Region * (BAM input) .. ok 852s 852s 331: Count * (BAM input) .. ok 852s 852s 332: Region * (CRAM input) .. ok 852s 852s 333: Count * (CRAM input) .. ok 852s 852s 334: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed (BAM input).. ok 852s 852s 335: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed (BAM input).. ok 852s 853s 336: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed (CRAM input).. ok 853s 853s 337: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed (CRAM input).. ok 853s 853s 338: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.02.bed (BAM input).. ok 853s 853s 339: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.02.bed (BAM input).. ok 853s 853s 340: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.02.bed (CRAM input).. ok 853s 853s 341: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.02.bed (CRAM input).. ok 853s 853s 342: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed (BAM input).. ok 853s 853s 343: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed (BAM input).. ok 853s 854s 344: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed (CRAM input).. ok 854s 854s 345: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed (CRAM input).. ok 854s 854s 346: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.02.bed (BAM input).. ok 854s 854s 347: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.02.bed (BAM input).. ok 854s 854s 348: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.02.bed (CRAM input).. ok 854s 854s 349: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.02.bed (CRAM input).. ok 854s 854s 350: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.03.bed (BAM input).. ok 854s 854s 351: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.03.bed (BAM input).. ok 854s 855s 352: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.03.bed (CRAM input).. ok 855s 855s 353: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.03.bed (CRAM input).. ok 855s 855s 354: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z (BAM input).. ok 855s 855s 355: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z (BAM input).. ok 855s 855s 356: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z (CRAM input).. ok 855s 855s 357: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z (CRAM input).. ok 855s 855s 358: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:30 (BAM input).. ok 855s 855s 359: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:30 (BAM input).. ok 855s 856s 360: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:30 (CRAM input).. ok 856s 856s 361: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:30 (CRAM input).. ok 856s 856s 362: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok 856s 856s 363: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok 856s 856s 364: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok 856s 856s 365: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok 856s 856s 366: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok 856s 856s 367: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok 856s 856s 368: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok 856s 856s 369: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok 856s 856s 370: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok 856s 857s 371: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok 857s 857s 372: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok 857s 857s 373: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok 857s 857s 374: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref2 (BAM input).. ok 857s 857s 375: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref2 (BAM input).. ok 857s 857s 376: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref2 (CRAM input).. ok 857s 857s 377: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref2 (CRAM input).. ok 857s 858s 378: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok 858s 858s 379: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok 858s 858s 380: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok 858s 858s 381: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok 858s 858s 382: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 (BAM input).. ok 858s 858s 383: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 (BAM input).. ok 858s 858s 384: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 (CRAM input).. ok 858s 858s 385: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 (CRAM input).. ok 858s 858s 386: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -f 128 (BAM input).. ok 858s 858s 387: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -f 128 (BAM input).. ok 858s 859s 388: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -f 128 (CRAM input).. ok 859s 859s 389: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -f 128 (CRAM input).. ok 859s 859s 390: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -q 5 (BAM input).. ok 859s 859s 391: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -q 5 (BAM input).. ok 859s 859s 392: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -q 5 (CRAM input).. ok 859s 859s 393: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -q 5 (CRAM input).. ok 859s 859s 394: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok 859s 859s 395: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok 859s 860s 396: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok 860s 860s 397: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok 860s 860s 398: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap (BAM input).. ok 860s 860s 399: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap (BAM input).. ok 860s 860s 400: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap (CRAM input).. ok 860s 860s 401: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap (CRAM input).. ok 860s 860s 402: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok 860s 860s 403: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok 860s 861s 404: Region -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok 861s 861s 405: Count -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok 861s 861s 406: Make BAM with no M5/UR tags .. ok 861s 861s 407: Add @SQ with -t (SAM -> SAM) .. ok 861s 861s 408: Add @SQ with -T (SAM -> SAM) .. ok 861s 861s 409: Add @SQ with -t (BAM -> SAM) .. ok 861s 861s 410: Add @SQ with -T (BAM -> SAM) .. ok 861s 861s 411: Add @SQ with -t (SAM -> BAM) .. ok 861s 861s 412: Add @SQ with -T (SAM -> BAM) .. ok 861s 861s 413: Add @SQ with -t (BAM -> BAM) .. ok 861s 861s 414: Add @SQ with -T (BAM -> BAM) .. ok 861s 861s 415: Add @SQ with -t (SAM -> CRAM) .. ok 861s 862s 416: Add @SQ with -T (SAM -> CRAM) .. ok 862s 862s 417: Add @SQ with -t (BAM -> CRAM) .. ok 862s 863s 418: Add @SQ with -T (BAM -> CRAM) .. ok 863s 863s 419: Make CRAM with no UR field .. ok 863s 863s 420: Decoding CRAM with no UR field via -T .. ok 863s 863s 421: CIGAR B-operator removal .. ok 863s 863s 422: Big SAM -> BAM .. ok 863s 864s 423: Big SAM -> BAM (2 threads) .. ok 864s 864s 424: Big SAM -> BAM (4 threads) .. ok 864s 866s 425: Big SAM -> CRAM .. ok 866s 869s 426: Big SAM -> CRAM (2 threads) .. ok 869s 871s 427: Big SAM -> CRAM (4 threads) .. ok 871s 872s 428: Subsample 0.2 (SAM input) ............ ok 872s 874s 429: Subsample 0.5 (SAM input) ............ ok 874s 876s 430: Subsample 0.8 (SAM input) ............ ok 876s 877s 431: Subsample 0.2 (BAM input) ............ ok 877s 878s 432: Subsample 0.5 (BAM input) ............ ok 878s 880s 433: Subsample 0.8 (BAM input) ............ ok 880s 886s 434: Subsample 0.2 (CRAM input) ............ ok 886s 892s 435: Subsample 0.5 (CRAM input) ............ ok 892s 899s 436: Subsample 0.8 (CRAM input) ............ ok 899s 899s 437: SAM add PG .. ok 899s 899s 438: Unset dup flag, remove dt and do tags .. ok 899s 899s 439: Unmap dup flagged reads. .. ok 899s 899s 440: Unmap dup flagged reads. .. ok 899s 899s 441: fetch pairs .. ok 899s 899s 442: fetch pairs .. ok 899s 899s 443: fetch pairs .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -h 0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -h 1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -h 5 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -h 29 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -h 30 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -n 0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -n 1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -n 5 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_head: 899s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools head -h 5 -n 5 < /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.sam 899s .. ok 899s 899s test_cat: 899s Generating test data file .................. done 899s Generate BAM file #1 .. ok 899s 900s Generate CRAM file #1 .. ok 900s 900s Generating test data file .................. done 900s Generate BAM file #2 .. ok 900s 900s Generate CRAM file #2 .. ok 900s 900s Generating test data file .................. done 901s Generate BAM file #3 .. ok 901s 901s Generate CRAM file #3 .. ok 901s 901s Generating test data file .................. done 901s Generate BAM file #4 .. ok 901s 902s Generate CRAM file #4 .. ok 902s 902s 1: cat BAM files .. ok 902s 902s 2: cat recompressed BAM files .. ok 902s 902s 3: cat CRAM files .. ok 902s 902s 4: cat BAM files to stdout .. ok 902s 902s 5: cat recompressed BAM files to stdout .. ok 902s 903s 6: cat CRAM files to stdout .. ok 903s 903s 7: cat BAM files with new header .. ok 903s 903s 8: cat recompressed BAM files with new header .. ok 903s 904s 9: cat CRAM files with new header .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import -0 test/bam2fq/1.1.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/0.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import -s test/bam2fq/1.1.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/0.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import -s test/bam2fq/5.s.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -i --index-format 'i*i*' -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -T RG,BC,QT -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -T RG,BC,QT,MD,ia -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG ID:rgid' 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/import/2.interleaved.fq -T "" 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/import/3.interleaved.fq -i 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/import/4.aux.fq -T "*" 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/import/4.aux.fq -T "" 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import test/import/4.aux.fq -T XZ,XA,AA 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import --i1 test/import/5-i1.fq --i2 test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq 904s .. ok 904s 904s test_import: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools import --i1 test/import/5-i1.fq --i2 test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ 904s .. ok 904s 904s test_bam2fq: 904s Generate BAM file .. ok 904s 904s Generate CRAM file .. ok 904s 904s 1: fastq (SAM input) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 2: fastq -n (SAM input) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 3: fastq (BAM input) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 4: fastq -n (BAM input) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 5: fastq (CRAM input) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 6: fastq -n (CRAM input) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.002.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.003.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag BC --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.004.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag BC -O --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.004.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag BC -O --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.010.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag BC -N --index-format 'n*i*' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc_split.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -t -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -t -T MD,ia -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag BC -i --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.004.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --barcode-tag BC -i --index-format 'i*i*' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -i --index-format 'i*i*' -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.703.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fasta -N -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fa -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -s /tmp/EgVqtvPWm0/bam2fq.discard.s.fq -0 /tmp/EgVqtvPWm0/bam2fq.discard.0.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -T ba,bb,bc,bd,be,bf,bg /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.013.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq --index-format 'i8n1i8' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i1.fq --i2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i2.fq -0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/0.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.014.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -T '' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -t -T '*' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -T '*' -d MD:10 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -T '*' -d NM:0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -N -T '*' -d ia /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s Generate BAM file (2 threads) .. ok 904s 904s Generate CRAM file (2 threads) .. ok 904s 904s 1: fastq (SAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 2: fastq -n (SAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 3: fastq (BAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 4: fastq -n (BAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 5: fastq (CRAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s 6: fastq -n (CRAM input) (2 threads) [M::bam2fq_mainloop] discarded 0 singletons 904s [M::bam2fq_mainloop] processed 36 reads 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.002.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.003.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.004.sam 904s .. ok 904s 904s test_bam2fq: 904s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.004.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.010.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bc_split.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -t -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -t -T MD,ia -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.004.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i.fq -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -i --index-format 'i*i*' -s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/s.fq -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.005.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/1.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/2.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.703.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fq -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fasta -@ 2 -N -1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fa -2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/o.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -s /tmp/EgVqtvPWm0/bam2fq.discard.s.fq -0 /tmp/EgVqtvPWm0/bam2fq.discard.0.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.013.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i1.fq --i2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/i2.fq -0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/0.fq /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.014.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -T '' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -t -T '*' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -T '*' -d MD:10 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -T '*' -d NM:0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_bam2fq: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fastq -@ 2 -N -T '*' -d ia /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/bam2fq.001.sam 905s .. ok 905s 905s test_depad: 905s Generate BAM file .. ok 905s 905s depad (SAM input) .. ok 905s 905s depad -s (SAM input) .. ok 905s 905s depad -u (SAM input) .. ok 905s 905s depad -1 (SAM input) .. ok 905s 905s depad (BAM input) .. ok 905s 905s depad -s (BAM input) .. ok 905s 905s depad -u (BAM input) .. ok 905s 905s depad -1 (BAM input) .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/1_map_cigar.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/1_map_cigar_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/2_equal_cigar_full_seq.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/3_map_cigar_equal_seq.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/4_X_cigar_full_seq.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/5_insert_cigar.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/5_insert_cigar_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa -i 0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/5_insert_cigar.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/7_supp.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/7_supp_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/8_secondary.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/8_secondary_large.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -S RG -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/1_map_cigar.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -S RG -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/test.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/10_map_cigar.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -t /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11.stats.targets /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -g 4 -t /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11.stats.targets /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -g 4 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_overlaps.bam -t /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_3reads.bed | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_overlaps.bam -p -t /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_3reads.bed | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_overlaps.bam -t /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_2reads.bed | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_overlaps.bam -p -t /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/12_2reads.bed | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13_barcodes_ok.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4 905s 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13.barcodes.fail.expected: No such file or directory 905s .. expected failure 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4 905s 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13.barcodes.fail.expected: No such file or directory 905s .. expected failure 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4 905s 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/13.barcodes.fail.expected: No such file or directory 905s .. expected failure 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -I s1 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.bam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -I grp2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.bam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -I grp3 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.bam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -I Sample /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/11_target.bam | tail -n+4 905s .. ok 905s 905s test_stats: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools stats -r /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/mpileup/ce.fa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/stat/15.big_del.sam | tail -n+4 905s .. ok 905s 905s test_merge: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.sam 905s .. ok 905s 905s test_merge: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.bam 905s .. ok 905s 905s test_merge: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -O sam -b /tmp/plEU3L4Vpw - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam 905s .. ok 905s 905s test_merge: 905s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -r -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -cp -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a_regex.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b_regex.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -o - -s 1 -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/EgVqtvPWm0/merge.tag.1.bam /tmp/EgVqtvPWm0/merge.tag.2.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/EgVqtvPWm0/merge.tag.3.bam /tmp/EgVqtvPWm0/merge.tag.4.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge --no-PG -O SAM - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/merge/test_no_pg_rg_co.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge --no-PG -O SAM -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/merge/merge.bed - /tmp/EgVqtvPWm0/merge.bed.1.bam /tmp/EgVqtvPWm0/merge.bed.2.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge --no-PG -r -O SAM - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/merge/test_no_pg_rg_co.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -O sam -b /tmp/phpOnVFbw5 - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -r -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -cp -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -O sam - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a_regex.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b_regex.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -o - -s 1 -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_c.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/EgVqtvPWm0/merge.tag.1.bam /tmp/EgVqtvPWm0/merge.tag.2.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/EgVqtvPWm0/merge.tag.3.bam /tmp/EgVqtvPWm0/merge.tag.4.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 --no-PG -O SAM - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/merge/test_no_pg_rg_co.sam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 --no-PG -O SAM -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/merge/merge.bed - /tmp/EgVqtvPWm0/merge.bed.1.bam /tmp/EgVqtvPWm0/merge.bed.2.bam 906s .. ok 906s 906s test_merge: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -@ 2 --no-PG -r -O SAM - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/merge/test_no_pg_rg_co.sam 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/EgVqtvPWm0/sortout 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/EgVqtvPWm0/sortout.bam 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/EgVqtvPWm0/sorttmp 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -n -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -N -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -t RG -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -n -t RG -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -t AS -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -t FI -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort --template-coordinate -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/sort/template-coordinate.sort.sam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -M -K10 -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -M -K10 -I /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.ref.fa -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -MH -K10 -I /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.ref.fa -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/EgVqtvPWm0/sortout 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/EgVqtvPWm0/sortout.bam 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam /tmp/EgVqtvPWm0/sorttmp 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -n -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -N -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_b.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -t RG -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -n -t RG -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -t AS -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -t FI -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 --template-coordinate -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/sort/template-coordinate.sort.sam -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -M -K10 -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -M -K10 -I /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.ref.fa -O SAM -o - 906s .. ok 906s 906s test_sort: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/auto_indexed.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -@ 2 -MH -K10 -I /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.ref.fa -O SAM -o - 906s .. ok 906s 906s test_collate: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate --output-fmt=sam -O /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam 906s .. ok 906s 906s test_collate: 906s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate1.tmp.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam 907s .. ok 907s 907s test_collate: 907s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate2.tmp.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate2.tmp 907s .. ok 907s 907s test_collate: 907s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate --output-fmt=sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate3.tmp 907s .. ok 907s 907s test_collate: 907s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate --output-fmt=sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/fast_collate.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/1_fast_collate.sam 907s .. ok 907s 907s test_collate: 907s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate --output-fmt=sam -f -r 4 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/fast_collate.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/2_fast_collate_with_tmp.sam 907s .. ok 907s 907s test_collate: 907s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -@ 2 --output-fmt=sam -O /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam 908s .. ok 908s 908s test_collate: 908s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -@ 2 -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate1.tmp.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam 909s .. ok 909s 909s test_collate: 909s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -@ 2 -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate2.tmp.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate2.tmp 909s .. ok 909s 909s test_collate: 909s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -@ 2 --output-fmt=sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_d.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/collate3.tmp 910s .. ok 910s 910s test_collate: 910s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -@ 2 --output-fmt=sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/fast_collate.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/1_fast_collate.sam 911s .. ok 911s 911s test_collate: 911s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools collate -@ 2 --output-fmt=sam -f -r 4 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/fast_collate.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/collate/2_fast_collate_with_tmp.sam 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/1_coord_sort.sam - 912s 912s ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname. 912s 912s .. expected failure 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -z off -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/2_isize_overflow.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/3_reverse_read_pp_lt.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/4_reverse_read_pp_equal.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -cO sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/5_ct.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -cO sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/6_ct_replace.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -z off -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/7_two_read_mapped.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -z off -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/8_isize_overflow_64bit.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/sanitize.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/1_coord_sort.sam - 912s 912s ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname. 912s 912s .. expected failure 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -z off -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/2_isize_overflow.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/3_reverse_read_pp_lt.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/4_reverse_read_pp_equal.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -cO sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/5_ct.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -cO sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/6_ct_replace.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -z off -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/7_two_read_mapped.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -z off -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/8_isize_overflow_64bit.sam - 912s .. ok 912s 912s test_fixmate: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -@ 2 -O sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/fixmate/sanitize.sam - 912s .. ok 912s 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools calmd -uAr /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.ref.fa 912s .. ok 912s 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools calmd -@ 2 -uAr /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.ref.fa 912s .. ok 912s 912s test_idxstat: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools idxstats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam 912s .. ok 912s 912s test_idxstat: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools idxstats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.cram 912s .. ok 912s 912s test_idxstat: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools idxstats /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.sam 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/1.quickcheck.badeof.bam 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/2.quickcheck.badheader.bam 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/3.quickcheck.ok.bam 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/4.quickcheck.ok.bam 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/5.quickcheck.scramble30.truncated.cram 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/6.quickcheck.cram21.ok.cram 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/7.quickcheck.cram30.ok.cram 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/8.quickcheck.cram21.truncated.cram 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/9.quickcheck.cram30.truncated.cram 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/10.quickcheck.notargets.bam 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck -v /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/1.quickcheck.badeof.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/2.quickcheck.badheader.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/3.quickcheck.ok.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/4.quickcheck.ok.bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/5.quickcheck.scramble30.truncated.cram /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/6.quickcheck.cram21.ok.cram /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/7.quickcheck.cram30.ok.cram /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/8.quickcheck.cram21.truncated.cram /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/9.quickcheck.cram30.truncated.cram /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,' 912s .. ok 912s 912s test_quickcheck: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools quickcheck -uv /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reheader/hdr.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG | perl -pe 's/ VN:.*//' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reheader/hdr.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v21.cram | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG | perl -pe 's/ VN:.*//' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reheader/hdr.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v30.cram | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG | perl -pe 's/ VN:.*//' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader --in-place /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reheader/hdr.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v21.cram && /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v21.cram | perl -pe 's/ VN:.*//' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader --in-place /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reheader/hdr.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v30.cram && /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v30.cram | perl -pe 's/ VN:.*//' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.bam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG | perl -pe 's/ VN:.*//' 912s .. ok 912s 912s test_reheader: 912s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/view.001.tmp.v30.cram | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG | perl -pe 's/ VN:.*//' 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -m overwrite_all /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -m orphan_only /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/2_fixup_orphan.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -R '1#9' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/4_fixup_norg.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/4_fixup_norg.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -m overwrite_all /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -m orphan_only /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/2_fixup_orphan.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -R '1#9' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/4_fixup_norg.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/4_fixup_norg.sam 913s .. ok 913s 913s test_addrprg: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/addrprg/1_fixup.sam 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/1_name_sort.sam - 913s 913s ERR: samtools markdup: error, queryname sorted, must be sorted by coordinate. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/2_bad_order.sam - 913s 913s ERR: samtools markdup: error, not in coordinate sorted order. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/3_missing_mc.sam - 913s 913s ERR: samtools markdup: error, no MC tag. Please run samtools fixmate on file first. 913s 913s samtools markdup: error, unable to assign pair hash key. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/4_missing_ms.sam - 913s 913s ERR: samtools markdup: error, no ms score tag. Please run samtools fixmate on file first. 913s 913s samtools markdup: error, no ms score tag. Please run samtools fixmate on file first. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/5_markdup.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -O sam -r --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/6_remove_dups.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/7_mark_supp_dup.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/8_optical_dup.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/9_optical_dup_qcfail.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/10_optical_chain.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/10_optical_chain.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/11_optical_dup_regex.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/11_optical_dup_regex.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/12_optical_chain_regex.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t --barcode-tag BX -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/13_optical_barcode_tag.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t --barcode-name -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/14_optical_barcode_name.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]+):([0-9]+)' --coords-order xy -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/15_optical_barcode_rgx_name.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]{4})([0-9]{4})' --coords-order xy -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/16_optical_barcode_rgx_name_test_2.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -d 100 --mode s -t --use-read-groups -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/17_read_group.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup --mode t -t -O sam --no-PG --duplicate-count --barcode-tag BC -S /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/18_primary_duplicate_count.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/1_name_sort.sam - 913s 913s ERR: samtools markdup: error, queryname sorted, must be sorted by coordinate. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/2_bad_order.sam - 913s 913s ERR: samtools markdup: error, not in coordinate sorted order. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/3_missing_mc.sam - 913s 913s ERR: samtools markdup: error, no MC tag. Please run samtools fixmate on file first. 913s 913s samtools markdup: error, unable to assign pair hash key. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/4_missing_ms.sam - 913s 913s ERR: samtools markdup: error, no ms score tag. Please run samtools fixmate on file first. 913s 913s samtools markdup: error, no ms score tag. Please run samtools fixmate on file first. 913s 913s 913s .. expected failure 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/5_markdup.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -O sam -r --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/6_remove_dups.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/7_mark_supp_dup.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/8_optical_dup.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/9_optical_dup_qcfail.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/10_optical_chain.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/10_optical_chain.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/11_optical_dup_regex.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/11_optical_dup_regex.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/12_optical_chain_regex.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-tag BX -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/13_optical_barcode_tag.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-name -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/14_optical_barcode_name.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]+):([0-9]+)' --coords-order xy -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/15_optical_barcode_rgx_name.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -S -d 100 --mode s -t --barcode-rgx '^([!-9;-?A-~]+):[0-9]+:' --read-coords '^[!-9;-?A-~]+:([0-9]{4})([0-9]{4})' --coords-order xy -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/16_optical_barcode_rgx_name_test_2.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 -d 100 --mode s -t --use-read-groups -O sam --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/17_read_group.sam - 913s .. ok 913s 913s test_markdup: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools markdup -@ 2 --mode t -t -O sam --no-PG --duplicate-count --barcode-tag BC -S /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/markdup/18_primary_duplicate_count.sam - 913s .. ok 913s 913s test_bedcov: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools bedcov /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov.bam 913s .. ok 913s 913s test_bedcov: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools bedcov -j /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov.bam 913s .. ok 913s 913s test_bedcov: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools bedcov -g512 -G2048 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov_gG.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov.bam 913s .. ok 913s 913s test_bedcov: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools bedcov -c /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov_gG.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/bedcov/bedcov.bam 913s .. ok 913s 913s test_split: 913s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split --output-fmt sam -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split --output-fmt sam -d RG -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split --output-fmt sam -d an -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split --output-fmt sam -d an -M 3 -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split -@ 2 --output-fmt sam -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split -@ 2 --output-fmt sam -d RG -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split -@ 2 --output-fmt sam -d an -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_split: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools split -@ 2 --output-fmt sam -d an -M 3 -u /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.unk.sam -f /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.tmp.%!.%. /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/split/split.sam 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG /tmp/EgVqtvPWm0/longref.sam.gz 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG /tmp/EgVqtvPWm0/longref.sam.gz CHROMOSOME_I:10000000114-10000000168 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view -h --no-PG -L /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/test.bed /tmp/EgVqtvPWm0/longref.sam.gz 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -O sam --no-PG -m 10M /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/longref_name.sam 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools merge -O sam --no-PG - /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/longref.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/longref2.sam 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools depth /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/longref.sam 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools depth -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/large_pos/longref.sam 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/EgVqtvPWm0/longref.sam.gz 914s .. ok 914s 914s test_large_positions: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -O sam --no-PG -n -m 10M test/large_pos/longref3.sam | 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools fixmate -O sam --no-PG - - | 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools sort -O sam --no-PG -m 10M 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --original -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --output-fmt=sam -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --both-ends -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/2_both_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip --no-PG --output-fmt=sam --hard-clip -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test2.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/4_total_hc_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --original -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --both-ends -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/2_both_test_data.sam 914s .. ok 914s 914s test_ampliconclip: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam --hard-clip -b /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test2.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/4_total_hc_data.sam 914s .. ok 914s 914s test_ampliconstats: 914s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_hard_clipped.expected.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_soft_clipped.expected.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/1_soft_clipped_strand.expected.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/2_both_clipped.expected.sam | grep -E -v 'Samtools version|Command line' 915s .. ok 915s 915s test_ampliconstats: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconstats -@ 2 -c 0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/multi_ref.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconstats/mixed_clipped.sam | grep -E -v 'Samtools version|Command line' 915s .. ok 915s 915s test_ampliconstats: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools ampliconstats -@ 2 -c 0 /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconclip/ac_test.bed /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/ampliconstats/mixed_clipped.sam | grep -E -v 'Samtools version|Command line' 915s .. ok 915s 915s test_reset: 915s cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset < /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools view 915s .. ok 915s 915s test_reset: 915s cat /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam | /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.bam 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/test_input_1_a.cram 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa_index /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam; grep /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam -e"@PG ID:samtools PN:samtools" | wc -l | sed 's/ //g' 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG sam_to_fixed_bam /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam; grep /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam -e"@PG ID:" | wc -l | sed 's/ //g' 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa_index --no-PG /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam; grep /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output.tmp.sam -e"@PG" 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG --keep-tag RG -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG --keep-tag X0,MD -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG --remove-tag X0,X1,MD --keep-tag X0,MD -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG --remove-tag X0,X1,MD -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG -x X0,X1,MD -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset --reject-PG bwa /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/dat/mpileup.1.sam --no-RG --remove-tag ^X0,MD --keep-tag X1 -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s test_reset: 915s /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/samtools reset /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/seq.sam -o /tmp/autopkgtest.l28Yhi/autopkgtest_tmp/test/reset/output 915s .. ok 915s 915s 915s Number of tests: 915s total .. 894 915s passed .. 863 915s failed .. 0 915s expected failure .. 31 915s unexpected pass .. 0 915s 916s autopkgtest [19:20:22]: test run-unit-test: -----------------------] 916s autopkgtest [19:20:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 916s run-unit-test PASS 917s autopkgtest [19:20:23]: @@@@@@@@@@@@@@@@@@@@ summary 917s run-unit-test PASS 1261s Creating nova instance adt-noble-arm64-samtools-20240326-190506-juju-7f2275-prod-proposed-migration-environment-2-9b8490eb-e41e-46a7-bdc3-d8692093064b from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)... 1261s ERROR (CommandError): Wait for specified server(s) failed. 1261s soft reboot timed out, doing hard reboot