0s autopkgtest [03:51:04]: starting date: 2024-03-11
  0s autopkgtest [03:51:04]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline
  0s autopkgtest [03:51:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.abh6jzmj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade samclip --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-9.secgroup --name adt-noble-arm64-samclip-20240311-035104-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [03:52:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [3976 B]
103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2615 kB]
104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [434 kB]
104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [37.3 kB]
104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [581 kB]
104s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
104s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB]
104s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
104s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [2990 kB]
104s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
104s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [39.6 kB]
104s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
105s Fetched 6850 kB in 1s (4739 kB/s)
105s Reading package lists...
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
109s Calculating upgrade...
109s The following packages were automatically installed and are no longer required:
109s   libgdbm-compat4t64 libperl5.38 lto-disabled-list make perl-modules-5.38
109s Use 'sudo apt autoremove' to remove them.
109s The following packages will be REMOVED:
109s   dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl
109s The following NEW packages will be installed:
109s   libgdbm-compat4t64 libgdbm6t64
109s The following packages have been kept back:
109s   libperl5.38
109s The following packages will be upgraded:
109s   perl-base perl-modules-5.38
109s 2 upgraded, 2 newly installed, 5 to remove and 1 not upgraded.
109s Need to get 4928 kB of archives.
109s After this operation, 4158 kB disk space will be freed.
109s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-base arm64 5.38.2-3.2 [1777 kB]
110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm6t64 arm64 1.23-5.1 [34.3 kB]
110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libgdbm-compat4t64 arm64 1.23-5.1 [6576 B]
110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
110s Fetched 4928 kB in 1s (6586 kB/s)
110s (Reading database ... 
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(Reading database ... 74748 files and directories currently installed.)
110s Removing dpkg-dev (1.22.4ubuntu5) ...
111s Removing libdpkg-perl (1.22.4ubuntu5) ...
111s Removing perl (5.38.2-3) ...
111s (Reading database ... 
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(Reading database ... 74167 files and directories currently installed.)
111s Preparing to unpack .../perl-base_5.38.2-3.2_arm64.deb ...
111s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ...
111s Setting up perl-base (5.38.2-3.2) ...
111s dpkg: libgdbm6:arm64: dependency problems, but removing anyway as you requested:
111s  python3-gdbm:arm64 depends on libgdbm6 (>= 1.16).
111s  man-db depends on libgdbm6 (>= 1.16).
111s  libperl5.38:arm64 depends on libgdbm6 (>= 1.21).
111s  libgdbm-compat4:arm64 depends on libgdbm6 (>= 1.16).
111s 
111s (Reading database ... 
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(Reading database ... 74167 files and directories currently installed.)
111s Removing libgdbm6:arm64 (1.23-5) ...
111s Selecting previously unselected package libgdbm6t64:arm64.
111s (Reading database ... 
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(Reading database ... 74162 files and directories currently installed.)
111s Preparing to unpack .../libgdbm6t64_1.23-5.1_arm64.deb ...
111s Unpacking libgdbm6t64:arm64 (1.23-5.1) ...
111s dpkg: libgdbm-compat4:arm64: dependency problems, but removing anyway as you requested:
111s  libperl5.38:arm64 depends on libgdbm-compat4 (>= 1.18-3).
111s 
111s (Reading database ... 
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111s Removing libgdbm-compat4:arm64 (1.23-5) ...
111s Selecting previously unselected package libgdbm-compat4t64:arm64.
111s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 74163 files and directories currently installed.)
111s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_arm64.deb ...
111s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ...
111s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ...
111s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
112s Setting up libgdbm6t64:arm64 (1.23-5.1) ...
112s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ...
112s Setting up perl-modules-5.38 (5.38.2-3.2) ...
112s Processing triggers for man-db (2.12.0-3) ...
112s Processing triggers for libc-bin (2.39-0ubuntu2) ...
113s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s The following packages will be REMOVED:
113s   libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* perl-modules-5.38*
114s 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded.
114s After this operation, 52.0 MB disk space will be freed.
114s (Reading database ... 
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114s Removing libperl5.38:arm64 (5.38.2-3) ...
114s Removing libgdbm-compat4t64:arm64 (1.23-5.1) ...
114s Removing lto-disabled-list (47) ...
114s Removing make (4.3-4.1build1) ...
114s Removing perl-modules-5.38 (5.38.2-3.2) ...
114s Processing triggers for man-db (2.12.0-3) ...
114s Processing triggers for libc-bin (2.39-0ubuntu2) ...
115s sh: Attempting to set up Debian/Ubuntu apt sources automatically
115s sh: Distribution appears to be Ubuntu
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
117s eatmydata is already the newest version (131-1).
117s dbus is already the newest version (1.14.10-4ubuntu1).
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
118s rng-tools-debian is already the newest version (2.4).
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s haveged is already the newest version (1.9.14-1ubuntu1).
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s The following additional packages will be installed:
119s   libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 lto-disabled-list
119s   make perl perl-modules-5.38
119s Suggested packages:
119s   debian-keyring gcc | c-compiler git bzr make-doc perl-doc
119s   libterm-readline-gnu-perl | libterm-readline-perl-perl
119s   libtap-harness-archive-perl
119s Recommended packages:
119s   build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl
119s   libfile-fcntllock-perl
119s The following packages will be REMOVED:
119s   libdb5.3
119s The following NEW packages will be installed:
119s   dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64
119s   lto-disabled-list make perl perl-modules-5.38
119s 0 upgraded, 9 newly installed, 1 to remove and 0 not upgraded.
119s Need to get 7257 kB/10.4 MB of archives.
119s After this operation, 56.1 MB of additional disk space will be used.
119s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-5 [719 kB]
120s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libperl5.38t64 arm64 5.38.2-3.2 [4771 kB]
120s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 perl arm64 5.38.2-3.2 [231 kB]
120s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.4ubuntu5 [268 kB]
120s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 make arm64 4.3-4.1build1 [177 kB]
120s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 47 [12.4 kB]
120s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.4ubuntu5 [1078 kB]
120s Fetched 7257 kB in 1s (8493 kB/s)
120s dpkg: libdb5.3:arm64: dependency problems, but removing anyway as you requested:
120s  libsasl2-modules-db:arm64 depends on libdb5.3.
120s  libpython3.12-stdlib:arm64 depends on libdb5.3.
120s  libpam-modules:arm64 depends on libdb5.3.
120s  iproute2 depends on libdb5.3.
120s  apt-utils depends on libdb5.3.
120s 
121s (Reading database ... 
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(Reading database ... 72198 files and directories currently installed.)
121s Removing libdb5.3:arm64 (5.3.28+dfsg2-4) ...
121s Selecting previously unselected package libdb5.3t64:arm64.
121s (Reading database ... 
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(Reading database ... 72192 files and directories currently installed.)
121s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5_arm64.deb ...
121s Unpacking libdb5.3t64:arm64 (5.3.28+dfsg2-5) ...
121s Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-5) ...
121s Selecting previously unselected package perl-modules-5.38.
121s (Reading database ... 
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(Reading database ... 72198 files and directories currently installed.)
121s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ...
121s Unpacking perl-modules-5.38 (5.38.2-3.2) ...
121s Selecting previously unselected package libgdbm-compat4t64:arm64.
121s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_arm64.deb ...
121s Unpacking libgdbm-compat4t64:arm64 (1.23-5.1) ...
121s Selecting previously unselected package libperl5.38t64:arm64.
121s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_arm64.deb ...
121s Unpacking libperl5.38t64:arm64 (5.38.2-3.2) ...
121s Selecting previously unselected package perl.
121s Preparing to unpack .../3-perl_5.38.2-3.2_arm64.deb ...
121s Unpacking perl (5.38.2-3.2) ...
121s Selecting previously unselected package libdpkg-perl.
121s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ...
121s Unpacking libdpkg-perl (1.22.4ubuntu5) ...
122s Selecting previously unselected package make.
122s Preparing to unpack .../5-make_4.3-4.1build1_arm64.deb ...
122s Unpacking make (4.3-4.1build1) ...
122s Selecting previously unselected package lto-disabled-list.
122s Preparing to unpack .../6-lto-disabled-list_47_all.deb ...
122s Unpacking lto-disabled-list (47) ...
122s Selecting previously unselected package dpkg-dev.
122s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ...
122s Unpacking dpkg-dev (1.22.4ubuntu5) ...
122s Setting up lto-disabled-list (47) ...
122s Setting up libgdbm-compat4t64:arm64 (1.23-5.1) ...
122s Setting up make (4.3-4.1build1) ...
122s Setting up perl-modules-5.38 (5.38.2-3.2) ...
122s Setting up libperl5.38t64:arm64 (5.38.2-3.2) ...
122s Setting up perl (5.38.2-3.2) ...
122s Setting up libdpkg-perl (1.22.4ubuntu5) ...
122s Setting up dpkg-dev (1.22.4ubuntu5) ...
122s Processing triggers for man-db (2.12.0-3) ...
123s Processing triggers for libc-bin (2.39-0ubuntu2) ...
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
124s The following packages will be REMOVED:
124s   cloud-init* python3-configobj* python3-debconf*
124s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
124s After this operation, 3248 kB disk space will be freed.
124s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74750 files and directories currently installed.)
124s Removing cloud-init (24.1-0ubuntu1) ...
125s Removing python3-configobj (5.0.8-3) ...
125s Removing python3-debconf (1.5.86) ...
125s Processing triggers for man-db (2.12.0-3) ...
126s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 74361 files and directories currently installed.)
126s Purging configuration files for cloud-init (24.1-0ubuntu1) ...
126s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
126s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
128s linux-generic is already the newest version (6.8.0-11.11+1).
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
128s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
128s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
128s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
129s Reading package lists...
129s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s autopkgtest [03:53:15]: rebooting testbed after setup commands that affected boot
159s autopkgtest [03:53:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
159s autopkgtest [03:53:43]: testbed dpkg architecture: arm64
160s autopkgtest [03:53:44]: @@@@@@@@@@@@@@@@@@@@ apt-source samclip
163s Get:1 http://ftpmaster.internal/ubuntu noble/universe samclip 0.4.0-4 (dsc) [2103 B]
163s Get:2 http://ftpmaster.internal/ubuntu noble/universe samclip 0.4.0-4 (tar) [36.3 kB]
163s Get:3 http://ftpmaster.internal/ubuntu noble/universe samclip 0.4.0-4 (diff) [3852 B]
163s gpgv: Signature made Sun Nov  6 18:57:53 2022 UTC
163s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
163s gpgv:                issuer "emollier@debian.org"
163s gpgv: Can't check signature: No public key
163s dpkg-source: warning: cannot verify inline signature for ./samclip_0.4.0-4.dsc: no acceptable signature found
163s autopkgtest [03:53:47]: testing package samclip version 0.4.0-4
163s autopkgtest [03:53:47]: build not needed
164s autopkgtest [03:53:48]: test run-unit-test: preparing testbed
167s Reading package lists...
167s Building dependency tree...
167s Reading state information...
168s Correcting dependencies...Starting pkgProblemResolver with broken count: 0
168s Starting 2 pkgProblemResolver with broken count: 0
168s Done
168s  Done
168s Starting pkgProblemResolver with broken count: 0
168s Starting 2 pkgProblemResolver with broken count: 0
168s Done
169s The following additional packages will be installed:
169s   samclip
169s The following NEW packages will be installed:
169s   samclip
169s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
169s 1 not fully installed or removed.
169s Need to get 21.6 kB of archives.
169s After this operation, 176 kB of additional disk space will be used.
169s Get:1 http://ftpmaster.internal/ubuntu noble/universe arm64 samclip all 0.4.0-4 [21.6 kB]
171s Fetched 21.6 kB in 0s (89.8 kB/s)
171s Selecting previously unselected package samclip.
171s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74306 files and directories currently installed.)
171s Preparing to unpack .../samclip_0.4.0-4_all.deb ...
171s Unpacking samclip (0.4.0-4) ...
171s Setting up samclip (0.4.0-4) ...
171s Setting up autopkgtest-satdep (0) ...
171s Processing triggers for man-db (2.12.0-3) ...
174s (Reading database ... 74318 files and directories currently installed.)
174s Removing autopkgtest-satdep (0) ...
175s autopkgtest [03:53:59]: test run-unit-test: [-----------------------
176s [samclip] samclip 0.4.0 by Torsten Seemann (@torstenseemann)
176s [samclip] Loading: test.fna.fai
176s [samclip] Found 4 sequences in test.fna.fai
176s [samclip] Total SAM records 249, removed 0, allowed 60, passed 249
176s [samclip] Header contained 5 lines
176s [samclip] Done.
176s autopkgtest [03:54:00]: test run-unit-test: -----------------------]
177s run-unit-test        PASS
177s autopkgtest [03:54:01]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
177s autopkgtest [03:54:01]: @@@@@@@@@@@@@@@@@@@@ summary
177s run-unit-test        PASS
189s Creating nova instance adt-noble-arm64-samclip-20240311-035104-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240311.img (UUID 900cfff9-7f1a-42c7-81a7-22635cd2a5f9)...