0s autopkgtest [21:20:17]: starting date and time: 2024-03-16 21:20:17+0000 0s autopkgtest [21:20:17]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [21:20:17]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hcd8r4ph/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade roary --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-19.secgroup --name adt-noble-arm64-roary-20240316-212017-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 77s autopkgtest [21:21:34]: testbed dpkg architecture: arm64 77s autopkgtest [21:21:34]: testbed apt version: 2.7.12 77s autopkgtest [21:21:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 78s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 78s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 78s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3703 kB] 79s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 79s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 79s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 79s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 79s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 79s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 79s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4017 kB] 79s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 79s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 79s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 80s Fetched 9115 kB in 2s (5206 kB/s) 81s Reading package lists... 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Calculating upgrade... 86s The following packages will be REMOVED: 86s libglib2.0-0 libssl3 86s The following NEW packages will be installed: 86s libglib2.0-0t64 libssl3t64 xdg-user-dirs 86s The following packages have been kept back: 86s curl 86s The following packages will be upgraded: 86s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 86s ubuntu-minimal ubuntu-standard 87s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 87s Need to get 4613 kB of archives. 87s After this operation, 211 kB of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 87s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 87s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 87s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 87s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 87s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 87s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 87s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 87s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 87s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 88s Fetched 4613 kB in 1s (6398 kB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 88s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 88s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 88s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 88s udisks2 depends on libglib2.0-0 (>= 2.77.0). 88s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 88s python3-gi depends on libglib2.0-0 (>= 2.77.0). 88s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 88s netplan.io depends on libglib2.0-0 (>= 2.70.0). 88s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 88s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 88s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 88s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 88s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 88s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 88s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 88s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 88s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 88s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 88s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 88s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 88s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 88s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 88s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 88s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 88s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 88s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 88s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 88s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 88s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 88s fwupd depends on libglib2.0-0 (>= 2.79.0). 88s bolt depends on libglib2.0-0 (>= 2.56.0). 88s 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 88s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 88s Selecting previously unselected package libglib2.0-0t64:arm64. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 88s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 89s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 89s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 89s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 89s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 89s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 89s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 89s wget depends on libssl3 (>= 3.0.0). 89s u-boot-tools depends on libssl3 (>= 3.0.0). 89s tnftp depends on libssl3 (>= 3.0.0). 89s tcpdump depends on libssl3 (>= 3.0.0). 89s systemd-resolved depends on libssl3 (>= 3.0.0). 89s systemd depends on libssl3 (>= 3.0.0). 89s sudo depends on libssl3 (>= 3.0.0). 89s sbsigntool depends on libssl3 (>= 3.0.0). 89s rsync depends on libssl3 (>= 3.0.0). 89s python3-cryptography depends on libssl3 (>= 3.0.0). 89s openssh-server depends on libssl3 (>= 3.0.10). 89s openssh-client depends on libssl3 (>= 3.0.10). 89s mtd-utils depends on libssl3 (>= 3.0.0). 89s mokutil depends on libssl3 (>= 3.0.0). 89s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 89s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 89s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 89s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 89s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 89s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 89s libnvme1 depends on libssl3 (>= 3.0.0). 89s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 89s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 89s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 89s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 89s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 89s kmod depends on libssl3 (>= 3.0.0). 89s dhcpcd-base depends on libssl3 (>= 3.0.0). 89s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 89s 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 89s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 89s Selecting previously unselected package libssl3t64:arm64. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 89s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 89s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 89s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 89s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 89s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 89s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 89s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 89s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 89s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 89s Unpacking ubuntu-minimal (1.536) over (1.535) ... 89s Selecting previously unselected package xdg-user-dirs. 89s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 89s Unpacking xdg-user-dirs (0.18-1) ... 89s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 89s Unpacking ubuntu-standard (1.536) over (1.535) ... 89s Setting up ubuntu-minimal (1.536) ... 89s Setting up xdg-user-dirs (0.18-1) ... 89s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 89s Setting up libtirpc-common (1.3.4+ds-1.1) ... 89s Setting up ubuntu-standard (1.536) ... 89s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 89s No schema files found: doing nothing. 89s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 89s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 89s Setting up openssl (3.0.13-0ubuntu1) ... 89s Setting up readline-common (8.2-3.1) ... 89s Processing triggers for man-db (2.12.0-3) ... 91s Processing triggers for install-info (7.1-3) ... 91s Processing triggers for libc-bin (2.39-0ubuntu2) ... 91s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 93s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 93s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 93s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 93s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 95s Reading package lists... 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s Calculating upgrade... 96s The following packages have been kept back: 96s curl 96s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 100s autopkgtest [21:21:57]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 100s autopkgtest [21:21:57]: @@@@@@@@@@@@@@@@@@@@ apt-source roary 102s Get:1 http://ftpmaster.internal/ubuntu noble/universe roary 3.13.0+dfsg-1 (dsc) [2501 B] 102s Get:2 http://ftpmaster.internal/ubuntu noble/universe roary 3.13.0+dfsg-1 (tar) [207 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble/universe roary 3.13.0+dfsg-1 (diff) [6612 B] 103s gpgv: Signature made Fri Nov 8 13:51:49 2019 UTC 103s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 103s gpgv: Can't check signature: No public key 103s dpkg-source: warning: cannot verify inline signature for ./roary_3.13.0+dfsg-1.dsc: no acceptable signature found 103s autopkgtest [21:22:00]: testing package roary version 3.13.0+dfsg-1 104s autopkgtest [21:22:01]: build not needed 104s autopkgtest [21:22:01]: test test-installed: preparing testbed 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s The following additional packages will be installed: 107s bedtools bioperl cd-hit curl fasttree fontconfig fontconfig-config 107s fonts-dejavu-core fonts-dejavu-mono libalgorithm-c3-perl 107s libalgorithm-diff-perl libarray-utils-perl libb-hooks-op-check-perl 107s libbio-perl-perl libblas3 libcairo2 libcapture-tiny-perl libclass-c3-perl 107s libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl 107s libclone-perl libcurl4t64 libdata-optlist-perl libdata-stag-perl libdatrie1 107s libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl 107s libdevel-overloadinfo-perl libdevel-stacktrace-perl libdigest-md5-file-perl 107s libdist-checkconflicts-perl libdynaloader-functions-perl 107s libencode-locale-perl libenv-path-perl libeval-closure-perl 107s libexception-class-perl libfile-find-rule-perl libfile-grep-perl 107s libfile-listing-perl libfile-slurper-perl libfile-which-perl 107s libfindbin-libs-perl libfontconfig1 libgfortran5 libgomp1 libgraph-perl 107s libgraph-readwrite-perl libgraphite2-3 libharfbuzz0b libheap-perl 107s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 107s libhttp-cookies-perl libhttp-date-perl libhttp-message-perl 107s libhttp-negotiate-perl libice6 libio-all-perl libio-html-perl 107s libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg-turbo8 libjpeg8 107s liblapack3 liblerc4 liblog-log4perl-perl liblwp-mediatypes-perl 107s liblwp-protocol-https-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 107s libmodule-implementation-perl libmodule-runtime-conflicts-perl 107s libmodule-runtime-perl libmoose-perl libmro-compat-perl libnet-http-perl 107s libnet-ssleay-perl libnumber-compare-perl libpackage-deprecationmanager-perl 107s libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 107s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 107s libparams-classify-perl libparams-util-perl libparse-yapp-perl 107s libperlio-utf8-strict-perl libpixman-1-0 libpng16-16t64 libpsl5t64 107s libreadline8t64 libset-object-perl libsharpyuv0 libsm6 libspiffy-perl 107s libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl 107s libsub-uplevel-perl libtcl8.6 libtest-deep-perl libtest-differences-perl 107s libtest-exception-perl libtest-file-perl libtest-files-perl 107s libtest-most-perl libtest-output-perl libtest-warn-perl libtext-csv-perl 107s libtext-diff-perl libtext-glob-perl libthai-data libthai0 libtiff6 107s libtimedate-perl libtingea0 libtirpc3t64 libtk8.6 libtry-tiny-perl 107s liburi-perl libwebp7 libwww-perl libwww-robotrules-perl libxcb-render0 107s libxcb-shm0 libxft2 libxml-parser-perl libxml-writer-perl libxrender1 107s libxss1 libxt6t64 mafft mcl ncbi-blast+ ncbi-data parallel 107s perl-openssl-defaults prank r-base-core r-cran-cli r-cran-colorspace 107s r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gtable 107s r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle 107s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 107s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-r6 r-cran-rcolorbrewer 107s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 107s r-cran-viridislite r-cran-withr roary unzip x11-common xdg-utils zip 107s Suggested packages: 107s libxml-sax-expatxs-perl libdata-dump-perl libio-compress-brotli-perl 107s libdb-file-lock-perl libfile-mimeinfo-perl libfile-readbackwards-perl 107s libfreezethaw-perl libmldbm-perl libdbd-csv-perl 107s liblog-dispatch-filerotate-perl librrds-perl libxml-dom-perl 107s libcrypt-ssleay-perl libscalar-number-perl tcl8.6 tk8.6 libsub-name-perl 107s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl mcl-doc csh 107s fish ksh tcsh zsh debhelper elpa-ess r-doc-info | r-doc-pdf r-mathlib 107s r-base-html r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 107s r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-png r-cran-jpeg r-cran-knitr 107s r-cran-rmarkdown r-cran-viridis r-cran-covr r-cran-magick r-cran-sf 107s r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime 107s r-cran-palmerpenguins r-cran-stringi r-cran-survival r-cran-units 107s r-cran-vdiffr r-cran-testthat r-cran-bench r-cran-blob r-cran-brio 107s r-cran-callr r-cran-crayon r-cran-evaluate r-cran-here r-cran-hms 107s r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr 107s Recommended packages: 107s bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libdbi-perl 107s libgd-gd2-perl libapache-dbi-perl libxml-simple-perl libyaml-perl 107s libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl 107s libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl 107s libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl 107s libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl 107s libdbd-pg-perl libgd-perl libgraphviz-perl libhtml-tableextract-perl 107s libpostscript-perl libsoap-lite-perl libsort-naturally-perl 107s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 107s libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl 107s libxml-sax-writer-perl libxml-libxml-perl libclass-c3-xs-perl perl-tk 107s libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl 107s libxml-perl libdevel-lexalias-perl libhtml-format-perl libipc-shareable-perl 107s liblog-dispatch-perl libdevel-partialdump-perl libtext-csv-xs-perl 107s libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl 107s blast2 lynx ruby r-recommended r-base-dev r-doc-html r-cran-callr 107s r-cran-covr r-cran-crayon r-cran-digest r-cran-htmltools r-cran-htmlwidgets 107s r-cran-knitr r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown 107s r-cran-rprojroot r-cran-rstudioapi r-cran-testthat r-cran-whoami 107s r-cran-unitizer r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj 107s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg 107s r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-dbi 107s r-cran-rsqlite r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-lubridate 107s r-cran-fs r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms 107s r-cran-stringi r-cran-data.table r-cran-mockr r-cran-formattable 107s r-cran-generics r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl 107s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 108s The following packages will be REMOVED: 108s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 108s The following NEW packages will be installed: 108s autopkgtest-satdep bedtools bioperl cd-hit fasttree fontconfig 108s fontconfig-config fonts-dejavu-core fonts-dejavu-mono libalgorithm-c3-perl 108s libalgorithm-diff-perl libarray-utils-perl libb-hooks-op-check-perl 108s libbio-perl-perl libblas3 libcairo2 libcapture-tiny-perl libclass-c3-perl 108s libclass-data-inheritable-perl libclass-load-perl libclass-load-xs-perl 108s libclone-perl libcurl4t64 libdata-optlist-perl libdata-stag-perl libdatrie1 108s libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl 108s libdevel-overloadinfo-perl libdevel-stacktrace-perl libdigest-md5-file-perl 108s libdist-checkconflicts-perl libdynaloader-functions-perl 108s libencode-locale-perl libenv-path-perl libeval-closure-perl 108s libexception-class-perl libfile-find-rule-perl libfile-grep-perl 108s libfile-listing-perl libfile-slurper-perl libfile-which-perl 108s libfindbin-libs-perl libfontconfig1 libgfortran5 libgomp1 libgraph-perl 108s libgraph-readwrite-perl libgraphite2-3 libharfbuzz0b libheap-perl 108s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl 108s libhttp-cookies-perl libhttp-date-perl libhttp-message-perl 108s libhttp-negotiate-perl libice6 libio-all-perl libio-html-perl 108s libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg-turbo8 libjpeg8 108s liblapack3 liblerc4 liblog-log4perl-perl liblwp-mediatypes-perl 108s liblwp-protocol-https-perl libmbedcrypto7 libmbedtls14 libmbedx509-1 108s libmodule-implementation-perl libmodule-runtime-conflicts-perl 108s libmodule-runtime-perl libmoose-perl libmro-compat-perl libnet-http-perl 108s libnet-ssleay-perl libnumber-compare-perl libpackage-deprecationmanager-perl 108s libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 108s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 108s libparams-classify-perl libparams-util-perl libparse-yapp-perl 108s libperlio-utf8-strict-perl libpixman-1-0 libpng16-16t64 libpsl5t64 108s libreadline8t64 libset-object-perl libsharpyuv0 libsm6 libspiffy-perl 108s libsub-exporter-perl libsub-exporter-progressive-perl libsub-install-perl 108s libsub-uplevel-perl libtcl8.6 libtest-deep-perl libtest-differences-perl 108s libtest-exception-perl libtest-file-perl libtest-files-perl 108s libtest-most-perl libtest-output-perl libtest-warn-perl libtext-csv-perl 108s libtext-diff-perl libtext-glob-perl libthai-data libthai0 libtiff6 108s libtimedate-perl libtingea0 libtirpc3t64 libtk8.6 libtry-tiny-perl 108s liburi-perl libwebp7 libwww-perl libwww-robotrules-perl libxcb-render0 108s libxcb-shm0 libxft2 libxml-parser-perl libxml-writer-perl libxrender1 108s libxss1 libxt6t64 mafft mcl ncbi-blast+ ncbi-data parallel 108s perl-openssl-defaults prank r-base-core r-cran-cli r-cran-colorspace 108s r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue r-cran-gtable 108s r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle 108s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 108s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-r6 r-cran-rcolorbrewer 108s r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 r-cran-vctrs 108s r-cran-viridislite r-cran-withr roary unzip x11-common xdg-utils zip 108s The following packages will be upgraded: 108s curl 108s 1 upgraded, 180 newly installed, 5 to remove and 0 not upgraded. 108s Need to get 95.0 MB/95.0 MB of archives. 108s After this operation, 234 MB of additional disk space will be used. 108s Get:1 /tmp/autopkgtest.T6RxuI/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [704 B] 108s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 108s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 108s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 108s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 108s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 108s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 108s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 bedtools arm64 2.31.1+dfsg-2 [636 kB] 108s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 108s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 libdata-stag-perl all 0.14-3 [372 kB] 108s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 libbio-perl-perl all 1.7.8-1 [2580 kB] 108s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libclass-data-inheritable-perl all 0.08-3 [8084 B] 108s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 108s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libexception-class-perl all 1.45-1 [28.6 kB] 108s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-deep-perl all 1.204-1 [47.1 kB] 108s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcapture-tiny-perl all 0.48-2 [20.2 kB] 108s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libalgorithm-diff-perl all 1.201-1 [41.8 kB] 108s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libtext-diff-perl all 1.45-2 [25.6 kB] 108s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-differences-perl all 0.71-1 [15.8 kB] 108s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 libsub-uplevel-perl all 0.2800-3 [11.6 kB] 108s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-exception-perl all 0.43-3 [13.4 kB] 108s Get:22 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-warn-perl all 0.37-2 [12.6 kB] 108s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-most-perl all 0.38-1 [21.5 kB] 108s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 bioperl all 1.7.8-1 [216 kB] 108s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 108s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 cd-hit arm64 4.8.1-4 [522 kB] 108s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 109s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 109s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 109s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 109s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 109s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] 109s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libarray-utils-perl all 0.5-3 [5862 B] 109s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libb-hooks-op-check-perl arm64 0.22-2build2 [9220 B] 109s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 109s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 109s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 109s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 109s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 109s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 109s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libclass-c3-perl all 0.35-2 [18.4 kB] 109s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libparams-util-perl arm64 1.102-2build1 [20.5 kB] 109s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-install-perl all 0.929-1 [9764 B] 109s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libdata-optlist-perl all 0.114-1 [9708 B] 109s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] 109s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libdevel-callchecker-perl arm64 0.008-2build1 [13.7 kB] 109s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libparams-classify-perl arm64 0.015-2build3 [19.6 kB] 109s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libmodule-runtime-perl all 0.016-2 [16.4 kB] 109s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libtry-tiny-perl all 0.31-2 [20.8 kB] 109s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libmodule-implementation-perl all 0.09-2 [12.0 kB] 109s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpackage-stash-perl all 0.40-1 [19.5 kB] 109s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libclass-load-perl all 0.25-2 [12.7 kB] 109s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libclass-load-xs-perl arm64 0.10-2build2 [13.4 kB] 109s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libclone-perl arm64 0.46-1build1 [10.4 kB] 109s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 109s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 109s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] 109s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] 109s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libmro-compat-perl all 0.15-2 [10.1 kB] 109s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] 109s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] 109s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] 109s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-date-perl all 6.06-1 [10.2 kB] 109s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-listing-perl all 6.16-1 [11.3 kB] 109s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tagset-perl all 3.20-6 [11.3 kB] 109s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 liburi-perl all 5.27-1 [88.0 kB] 109s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-parser-perl arm64 3.81-1build1 [84.8 kB] 109s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libhtml-tree-perl all 5.07-3 [200 kB] 109s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libio-html-perl all 1.004-3 [15.9 kB] 109s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 109s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] 109s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-cookies-perl all 6.11-1 [18.2 kB] 109s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-negotiate-perl all 6.01-2 [12.4 kB] 109s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 perl-openssl-defaults arm64 7 [7536 B] 109s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-ssleay-perl arm64 1.94-1 [311 kB] 109s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libio-socket-ssl-perl all 2.085-1 [195 kB] 109s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libnet-http-perl all 6.23-1 [22.3 kB] 109s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 liblwp-protocol-https-perl all 6.13-1 [9006 B] 109s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-robotrules-perl all 6.02-1 [12.6 kB] 109s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libwww-perl all 6.76-1 [138 kB] 109s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libdigest-md5-file-perl all 0.08-1.1 [8968 B] 109s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libdist-checkconflicts-perl all 0.11-2 [9942 B] 109s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libenv-path-perl all 0.19-4 [18.0 kB] 109s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-exporter-perl all 0.990-1 [49.0 kB] 109s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libeval-closure-perl all 0.14-3 [10.1 kB] 109s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libnumber-compare-perl all 0.03-3 [5974 B] 109s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libtext-glob-perl all 0.11-3 [6780 B] 109s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-find-rule-perl all 0.34-3 [24.4 kB] 109s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libfile-grep-perl all 0.02-3 [8248 B] 109s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-slurper-perl all 0.014-1 [7660 B] 109s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-which-perl all 1.27-2 [12.5 kB] 109s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libfindbin-libs-perl all 3.0.2-1 [22.3 kB] 109s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 109s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libheap-perl all 0.80-5 [33.8 kB] 109s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libset-object-perl arm64 1.42-1build3 [32.8 kB] 109s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libgraph-perl all 1:0.9727-1 [100 kB] 109s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libspiffy-perl all 0.46-1 [23.9 kB] 109s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libio-all-perl all 0.87-2 [61.3 kB] 109s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libparse-yapp-perl all 1.21-3 [38.0 kB] 109s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxml-parser-perl arm64 2.47-1build1 [202 kB] 109s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libxml-writer-perl all 0.900-2 [24.0 kB] 109s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libgraph-readwrite-perl all 2.10-1 [44.0 kB] 110s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 110s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 110s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 110s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 110s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 110s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 110s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 110s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 110s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 liblog-log4perl-perl all 1.57-1 [345 kB] 110s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedcrypto7 arm64 2.28.7-1ubuntu1 [206 kB] 110s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedx509-1 arm64 2.28.7-1ubuntu1 [46.8 kB] 110s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libmbedtls14 arm64 2.28.7-1ubuntu1 [82.0 kB] 110s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] 110s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] 110s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpackage-stash-xs-perl arm64 0.30-1build2 [18.0 kB] 110s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libmoose-perl arm64 2.2207-1 [717 kB] 110s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 110s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 110s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 110s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 110s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 110s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 110s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 110s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libperlio-utf8-strict-perl arm64 0.010-1build1 [10.9 kB] 110s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 110s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 110s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 110s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-file-perl all 1.993-1 [20.7 kB] 110s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-files-perl all 0.15-1 [9744 B] 110s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libtest-output-perl all 1.034-1 [14.2 kB] 110s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libtext-csv-perl all 2.04-1 [109 kB] 110s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 110s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 110s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 110s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libtingea0 arm64 21-361-2 [53.2 kB] 110s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 110s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 110s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 110s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 110s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 mafft arm64 7.505-1 [756 kB] 110s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 111s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 ncbi-blast+ arm64 2.12.0+ds-4 [12.1 MB] 111s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 prank arm64 0.0.170427+dfsg-3 [325 kB] 111s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 111s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 111s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 111s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 112s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 112s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 112s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 112s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 112s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 112s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 112s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 112s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 112s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 112s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 112s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 112s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 112s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 113s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 113s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 113s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 113s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 113s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 113s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 113s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 113s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 113s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 113s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 113s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 113s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 113s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 113s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 113s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 113s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 mcl arm64 1:22-282+ds-2 [520 kB] 113s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 parallel all 20231122+ds-1 [1944 kB] 113s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 fasttree arm64 2.1.11-2 [164 kB] 113s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 roary all 3.13.0+dfsg-1 [172 kB] 114s Preconfiguring packages ... 115s Fetched 95.0 MB in 5s (17.5 MB/s) 115s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 115s wget depends on libpsl5 (>= 0.16.0). 115s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 115s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 115s 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 115s Removing libpsl5:arm64 (0.21.2-1build1) ... 115s Selecting previously unselected package libpsl5t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 115s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 115s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 115s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 115s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 115s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 115s Selecting previously unselected package libcurl4t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 115s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 115s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 115s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 115s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 115s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 115s 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 115s Removing libpng16-16:arm64 (1.6.43-1) ... 115s Selecting previously unselected package libpng16-16t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 115s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 115s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 115s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 115s parted depends on libreadline8 (>= 6.0). 115s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 115s gpgsm depends on libreadline8 (>= 6.0). 115s gpgconf depends on libreadline8 (>= 6.0). 115s gpg depends on libreadline8 (>= 6.0). 115s gawk depends on libreadline8 (>= 6.0). 115s fdisk depends on libreadline8 (>= 6.0). 115s 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 115s Removing libreadline8:arm64 (8.2-3) ... 115s Selecting previously unselected package libreadline8t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 115s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 115s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 115s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 115s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 115s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 115s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 115s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 115s lsof depends on libtirpc3 (>= 1.0.2). 115s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 115s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 115s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 115s iproute2 depends on libtirpc3 (>= 1.0.2). 115s 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 116s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 116s Selecting previously unselected package libtirpc3t64:arm64. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 116s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 116s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 116s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 116s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 116s Selecting previously unselected package bedtools. 116s Preparing to unpack .../001-bedtools_2.31.1+dfsg-2_arm64.deb ... 116s Unpacking bedtools (2.31.1+dfsg-2) ... 116s Selecting previously unselected package libio-string-perl. 116s Preparing to unpack .../002-libio-string-perl_1.08-4_all.deb ... 116s Unpacking libio-string-perl (1.08-4) ... 116s Selecting previously unselected package libdata-stag-perl. 116s Preparing to unpack .../003-libdata-stag-perl_0.14-3_all.deb ... 116s Unpacking libdata-stag-perl (0.14-3) ... 116s Selecting previously unselected package libbio-perl-perl. 116s Preparing to unpack .../004-libbio-perl-perl_1.7.8-1_all.deb ... 116s Unpacking libbio-perl-perl (1.7.8-1) ... 116s Selecting previously unselected package libclass-data-inheritable-perl. 116s Preparing to unpack .../005-libclass-data-inheritable-perl_0.08-3_all.deb ... 116s Unpacking libclass-data-inheritable-perl (0.08-3) ... 116s Selecting previously unselected package libdevel-stacktrace-perl. 116s Preparing to unpack .../006-libdevel-stacktrace-perl_2.0500-1_all.deb ... 116s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 116s Selecting previously unselected package libexception-class-perl. 116s Preparing to unpack .../007-libexception-class-perl_1.45-1_all.deb ... 116s Unpacking libexception-class-perl (1.45-1) ... 116s Selecting previously unselected package libtest-deep-perl. 116s Preparing to unpack .../008-libtest-deep-perl_1.204-1_all.deb ... 116s Unpacking libtest-deep-perl (1.204-1) ... 116s Selecting previously unselected package libcapture-tiny-perl. 116s Preparing to unpack .../009-libcapture-tiny-perl_0.48-2_all.deb ... 116s Unpacking libcapture-tiny-perl (0.48-2) ... 116s Selecting previously unselected package libalgorithm-diff-perl. 116s Preparing to unpack .../010-libalgorithm-diff-perl_1.201-1_all.deb ... 116s Unpacking libalgorithm-diff-perl (1.201-1) ... 116s Selecting previously unselected package libtext-diff-perl. 116s Preparing to unpack .../011-libtext-diff-perl_1.45-2_all.deb ... 116s Unpacking libtext-diff-perl (1.45-2) ... 117s Selecting previously unselected package libtest-differences-perl. 117s Preparing to unpack .../012-libtest-differences-perl_0.71-1_all.deb ... 117s Unpacking libtest-differences-perl (0.71-1) ... 117s Selecting previously unselected package libsub-uplevel-perl. 117s Preparing to unpack .../013-libsub-uplevel-perl_0.2800-3_all.deb ... 117s Unpacking libsub-uplevel-perl (0.2800-3) ... 117s Selecting previously unselected package libtest-exception-perl. 117s Preparing to unpack .../014-libtest-exception-perl_0.43-3_all.deb ... 117s Unpacking libtest-exception-perl (0.43-3) ... 117s Selecting previously unselected package libtest-warn-perl. 117s Preparing to unpack .../015-libtest-warn-perl_0.37-2_all.deb ... 117s Unpacking libtest-warn-perl (0.37-2) ... 117s Selecting previously unselected package libtest-most-perl. 117s Preparing to unpack .../016-libtest-most-perl_0.38-1_all.deb ... 117s Unpacking libtest-most-perl (0.38-1) ... 117s Selecting previously unselected package bioperl. 117s Preparing to unpack .../017-bioperl_1.7.8-1_all.deb ... 117s Unpacking bioperl (1.7.8-1) ... 117s Selecting previously unselected package libgomp1:arm64. 117s Preparing to unpack .../018-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 117s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 117s Selecting previously unselected package cd-hit. 117s Preparing to unpack .../019-cd-hit_4.8.1-4_arm64.deb ... 117s Unpacking cd-hit (4.8.1-4) ... 117s Selecting previously unselected package fonts-dejavu-mono. 117s Preparing to unpack .../020-fonts-dejavu-mono_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-mono (2.37-8) ... 117s Selecting previously unselected package fonts-dejavu-core. 117s Preparing to unpack .../021-fonts-dejavu-core_2.37-8_all.deb ... 117s Unpacking fonts-dejavu-core (2.37-8) ... 117s Selecting previously unselected package fontconfig-config. 117s Preparing to unpack .../022-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 118s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 118s Selecting previously unselected package libfontconfig1:arm64. 118s Preparing to unpack .../023-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 118s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 118s Selecting previously unselected package fontconfig. 118s Preparing to unpack .../024-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 118s Unpacking fontconfig (2.15.0-1ubuntu1) ... 118s Selecting previously unselected package libalgorithm-c3-perl. 118s Preparing to unpack .../025-libalgorithm-c3-perl_0.11-2_all.deb ... 118s Unpacking libalgorithm-c3-perl (0.11-2) ... 118s Selecting previously unselected package libarray-utils-perl. 118s Preparing to unpack .../026-libarray-utils-perl_0.5-3_all.deb ... 118s Unpacking libarray-utils-perl (0.5-3) ... 118s Selecting previously unselected package libb-hooks-op-check-perl:arm64. 118s Preparing to unpack .../027-libb-hooks-op-check-perl_0.22-2build2_arm64.deb ... 118s Unpacking libb-hooks-op-check-perl:arm64 (0.22-2build2) ... 118s Selecting previously unselected package libblas3:arm64. 118s Preparing to unpack .../028-libblas3_3.12.0-3_arm64.deb ... 118s Unpacking libblas3:arm64 (3.12.0-3) ... 118s Selecting previously unselected package libpixman-1-0:arm64. 118s Preparing to unpack .../029-libpixman-1-0_0.42.2-1_arm64.deb ... 118s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 118s Selecting previously unselected package libxcb-render0:arm64. 118s Preparing to unpack .../030-libxcb-render0_1.15-1_arm64.deb ... 118s Unpacking libxcb-render0:arm64 (1.15-1) ... 118s Selecting previously unselected package libxcb-shm0:arm64. 118s Preparing to unpack .../031-libxcb-shm0_1.15-1_arm64.deb ... 118s Unpacking libxcb-shm0:arm64 (1.15-1) ... 118s Selecting previously unselected package libxrender1:arm64. 118s Preparing to unpack .../032-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 118s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 118s Selecting previously unselected package libcairo2:arm64. 118s Preparing to unpack .../033-libcairo2_1.18.0-1_arm64.deb ... 118s Unpacking libcairo2:arm64 (1.18.0-1) ... 118s Selecting previously unselected package libclass-c3-perl. 118s Preparing to unpack .../034-libclass-c3-perl_0.35-2_all.deb ... 118s Unpacking libclass-c3-perl (0.35-2) ... 118s Selecting previously unselected package libparams-util-perl. 118s Preparing to unpack .../035-libparams-util-perl_1.102-2build1_arm64.deb ... 118s Unpacking libparams-util-perl (1.102-2build1) ... 118s Selecting previously unselected package libsub-install-perl. 118s Preparing to unpack .../036-libsub-install-perl_0.929-1_all.deb ... 118s Unpacking libsub-install-perl (0.929-1) ... 118s Selecting previously unselected package libdata-optlist-perl. 118s Preparing to unpack .../037-libdata-optlist-perl_0.114-1_all.deb ... 118s Unpacking libdata-optlist-perl (0.114-1) ... 118s Selecting previously unselected package libdynaloader-functions-perl. 118s Preparing to unpack .../038-libdynaloader-functions-perl_0.003-3_all.deb ... 118s Unpacking libdynaloader-functions-perl (0.003-3) ... 119s Selecting previously unselected package libdevel-callchecker-perl:arm64. 119s Preparing to unpack .../039-libdevel-callchecker-perl_0.008-2build1_arm64.deb ... 119s Unpacking libdevel-callchecker-perl:arm64 (0.008-2build1) ... 119s Selecting previously unselected package libparams-classify-perl:arm64. 119s Preparing to unpack .../040-libparams-classify-perl_0.015-2build3_arm64.deb ... 119s Unpacking libparams-classify-perl:arm64 (0.015-2build3) ... 119s Selecting previously unselected package libmodule-runtime-perl. 119s Preparing to unpack .../041-libmodule-runtime-perl_0.016-2_all.deb ... 119s Unpacking libmodule-runtime-perl (0.016-2) ... 119s Selecting previously unselected package libtry-tiny-perl. 119s Preparing to unpack .../042-libtry-tiny-perl_0.31-2_all.deb ... 119s Unpacking libtry-tiny-perl (0.31-2) ... 119s Selecting previously unselected package libmodule-implementation-perl. 119s Preparing to unpack .../043-libmodule-implementation-perl_0.09-2_all.deb ... 119s Unpacking libmodule-implementation-perl (0.09-2) ... 119s Selecting previously unselected package libpackage-stash-perl. 119s Preparing to unpack .../044-libpackage-stash-perl_0.40-1_all.deb ... 119s Unpacking libpackage-stash-perl (0.40-1) ... 119s Selecting previously unselected package libclass-load-perl. 119s Preparing to unpack .../045-libclass-load-perl_0.25-2_all.deb ... 119s Unpacking libclass-load-perl (0.25-2) ... 119s Selecting previously unselected package libclass-load-xs-perl. 119s Preparing to unpack .../046-libclass-load-xs-perl_0.10-2build2_arm64.deb ... 119s Unpacking libclass-load-xs-perl (0.10-2build2) ... 119s Selecting previously unselected package libclone-perl:arm64. 119s Preparing to unpack .../047-libclone-perl_0.46-1build1_arm64.deb ... 119s Unpacking libclone-perl:arm64 (0.46-1build1) ... 119s Selecting previously unselected package libdatrie1:arm64. 119s Preparing to unpack .../048-libdatrie1_0.2.13-3_arm64.deb ... 119s Unpacking libdatrie1:arm64 (0.2.13-3) ... 119s Selecting previously unselected package libdeflate0:arm64. 119s Preparing to unpack .../049-libdeflate0_1.19-1_arm64.deb ... 119s Unpacking libdeflate0:arm64 (1.19-1) ... 119s Selecting previously unselected package libsub-exporter-progressive-perl. 119s Preparing to unpack .../050-libsub-exporter-progressive-perl_0.001013-3_all.deb ... 119s Unpacking libsub-exporter-progressive-perl (0.001013-3) ... 119s Selecting previously unselected package libdevel-globaldestruction-perl. 119s Preparing to unpack .../051-libdevel-globaldestruction-perl_0.14-4_all.deb ... 119s Unpacking libdevel-globaldestruction-perl (0.14-4) ... 120s Selecting previously unselected package libmro-compat-perl. 120s Preparing to unpack .../052-libmro-compat-perl_0.15-2_all.deb ... 120s Unpacking libmro-compat-perl (0.15-2) ... 120s Selecting previously unselected package libdevel-overloadinfo-perl. 120s Preparing to unpack .../053-libdevel-overloadinfo-perl_0.007-1_all.deb ... 120s Unpacking libdevel-overloadinfo-perl (0.007-1) ... 120s Selecting previously unselected package libencode-locale-perl. 120s Preparing to unpack .../054-libencode-locale-perl_1.05-3_all.deb ... 120s Unpacking libencode-locale-perl (1.05-3) ... 120s Selecting previously unselected package libtimedate-perl. 120s Preparing to unpack .../055-libtimedate-perl_2.3300-2_all.deb ... 120s Unpacking libtimedate-perl (2.3300-2) ... 120s Selecting previously unselected package libhttp-date-perl. 120s Preparing to unpack .../056-libhttp-date-perl_6.06-1_all.deb ... 120s Unpacking libhttp-date-perl (6.06-1) ... 120s Selecting previously unselected package libfile-listing-perl. 120s Preparing to unpack .../057-libfile-listing-perl_6.16-1_all.deb ... 120s Unpacking libfile-listing-perl (6.16-1) ... 120s Selecting previously unselected package libhtml-tagset-perl. 120s Preparing to unpack .../058-libhtml-tagset-perl_3.20-6_all.deb ... 120s Unpacking libhtml-tagset-perl (3.20-6) ... 120s Selecting previously unselected package liburi-perl. 120s Preparing to unpack .../059-liburi-perl_5.27-1_all.deb ... 120s Unpacking liburi-perl (5.27-1) ... 120s Selecting previously unselected package libhtml-parser-perl:arm64. 120s Preparing to unpack .../060-libhtml-parser-perl_3.81-1build1_arm64.deb ... 120s Unpacking libhtml-parser-perl:arm64 (3.81-1build1) ... 120s Selecting previously unselected package libhtml-tree-perl. 120s Preparing to unpack .../061-libhtml-tree-perl_5.07-3_all.deb ... 120s Unpacking libhtml-tree-perl (5.07-3) ... 120s Selecting previously unselected package libio-html-perl. 120s Preparing to unpack .../062-libio-html-perl_1.004-3_all.deb ... 120s Unpacking libio-html-perl (1.004-3) ... 120s Selecting previously unselected package liblwp-mediatypes-perl. 120s Preparing to unpack .../063-liblwp-mediatypes-perl_6.04-2_all.deb ... 120s Unpacking liblwp-mediatypes-perl (6.04-2) ... 120s Selecting previously unselected package libhttp-message-perl. 120s Preparing to unpack .../064-libhttp-message-perl_6.45-1ubuntu1_all.deb ... 120s Unpacking libhttp-message-perl (6.45-1ubuntu1) ... 120s Selecting previously unselected package libhttp-cookies-perl. 120s Preparing to unpack .../065-libhttp-cookies-perl_6.11-1_all.deb ... 120s Unpacking libhttp-cookies-perl (6.11-1) ... 120s Selecting previously unselected package libhttp-negotiate-perl. 120s Preparing to unpack .../066-libhttp-negotiate-perl_6.01-2_all.deb ... 120s Unpacking libhttp-negotiate-perl (6.01-2) ... 120s Selecting previously unselected package perl-openssl-defaults:arm64. 120s Preparing to unpack .../067-perl-openssl-defaults_7_arm64.deb ... 120s Unpacking perl-openssl-defaults:arm64 (7) ... 120s Selecting previously unselected package libnet-ssleay-perl:arm64. 120s Preparing to unpack .../068-libnet-ssleay-perl_1.94-1_arm64.deb ... 120s Unpacking libnet-ssleay-perl:arm64 (1.94-1) ... 120s Selecting previously unselected package libio-socket-ssl-perl. 120s Preparing to unpack .../069-libio-socket-ssl-perl_2.085-1_all.deb ... 120s Unpacking libio-socket-ssl-perl (2.085-1) ... 120s Selecting previously unselected package libnet-http-perl. 120s Preparing to unpack .../070-libnet-http-perl_6.23-1_all.deb ... 120s Unpacking libnet-http-perl (6.23-1) ... 120s Selecting previously unselected package liblwp-protocol-https-perl. 120s Preparing to unpack .../071-liblwp-protocol-https-perl_6.13-1_all.deb ... 120s Unpacking liblwp-protocol-https-perl (6.13-1) ... 120s Selecting previously unselected package libwww-robotrules-perl. 120s Preparing to unpack .../072-libwww-robotrules-perl_6.02-1_all.deb ... 120s Unpacking libwww-robotrules-perl (6.02-1) ... 120s Selecting previously unselected package libwww-perl. 120s Preparing to unpack .../073-libwww-perl_6.76-1_all.deb ... 120s Unpacking libwww-perl (6.76-1) ... 121s Selecting previously unselected package libdigest-md5-file-perl. 121s Preparing to unpack .../074-libdigest-md5-file-perl_0.08-1.1_all.deb ... 121s Unpacking libdigest-md5-file-perl (0.08-1.1) ... 121s Selecting previously unselected package libdist-checkconflicts-perl. 121s Preparing to unpack .../075-libdist-checkconflicts-perl_0.11-2_all.deb ... 121s Unpacking libdist-checkconflicts-perl (0.11-2) ... 121s Selecting previously unselected package libenv-path-perl. 121s Preparing to unpack .../076-libenv-path-perl_0.19-4_all.deb ... 121s Unpacking libenv-path-perl (0.19-4) ... 121s Selecting previously unselected package libsub-exporter-perl. 121s Preparing to unpack .../077-libsub-exporter-perl_0.990-1_all.deb ... 121s Unpacking libsub-exporter-perl (0.990-1) ... 121s Selecting previously unselected package libeval-closure-perl. 121s Preparing to unpack .../078-libeval-closure-perl_0.14-3_all.deb ... 121s Unpacking libeval-closure-perl (0.14-3) ... 121s Selecting previously unselected package libnumber-compare-perl. 121s Preparing to unpack .../079-libnumber-compare-perl_0.03-3_all.deb ... 121s Unpacking libnumber-compare-perl (0.03-3) ... 121s Selecting previously unselected package libtext-glob-perl. 121s Preparing to unpack .../080-libtext-glob-perl_0.11-3_all.deb ... 121s Unpacking libtext-glob-perl (0.11-3) ... 121s Selecting previously unselected package libfile-find-rule-perl. 121s Preparing to unpack .../081-libfile-find-rule-perl_0.34-3_all.deb ... 121s Unpacking libfile-find-rule-perl (0.34-3) ... 121s Selecting previously unselected package libfile-grep-perl. 121s Preparing to unpack .../082-libfile-grep-perl_0.02-3_all.deb ... 121s Unpacking libfile-grep-perl (0.02-3) ... 121s Selecting previously unselected package libfile-slurper-perl. 121s Preparing to unpack .../083-libfile-slurper-perl_0.014-1_all.deb ... 121s Unpacking libfile-slurper-perl (0.014-1) ... 121s Selecting previously unselected package libfile-which-perl. 121s Preparing to unpack .../084-libfile-which-perl_1.27-2_all.deb ... 121s Unpacking libfile-which-perl (1.27-2) ... 121s Selecting previously unselected package libfindbin-libs-perl. 121s Preparing to unpack .../085-libfindbin-libs-perl_3.0.2-1_all.deb ... 121s Unpacking libfindbin-libs-perl (3.0.2-1) ... 121s Selecting previously unselected package libgfortran5:arm64. 121s Preparing to unpack .../086-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 121s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 121s Selecting previously unselected package libheap-perl. 121s Preparing to unpack .../087-libheap-perl_0.80-5_all.deb ... 121s Unpacking libheap-perl (0.80-5) ... 121s Selecting previously unselected package libset-object-perl. 121s Preparing to unpack .../088-libset-object-perl_1.42-1build3_arm64.deb ... 121s Unpacking libset-object-perl (1.42-1build3) ... 121s Selecting previously unselected package libgraph-perl. 121s Preparing to unpack .../089-libgraph-perl_1%3a0.9727-1_all.deb ... 121s Unpacking libgraph-perl (1:0.9727-1) ... 121s Selecting previously unselected package libspiffy-perl. 121s Preparing to unpack .../090-libspiffy-perl_0.46-1_all.deb ... 121s Unpacking libspiffy-perl (0.46-1) ... 121s Selecting previously unselected package libio-all-perl. 121s Preparing to unpack .../091-libio-all-perl_0.87-2_all.deb ... 121s Unpacking libio-all-perl (0.87-2) ... 121s Selecting previously unselected package libparse-yapp-perl. 121s Preparing to unpack .../092-libparse-yapp-perl_1.21-3_all.deb ... 121s Unpacking libparse-yapp-perl (1.21-3) ... 121s Selecting previously unselected package libxml-parser-perl. 121s Preparing to unpack .../093-libxml-parser-perl_2.47-1build1_arm64.deb ... 121s Unpacking libxml-parser-perl (2.47-1build1) ... 121s Selecting previously unselected package libxml-writer-perl. 121s Preparing to unpack .../094-libxml-writer-perl_0.900-2_all.deb ... 121s Unpacking libxml-writer-perl (0.900-2) ... 121s Selecting previously unselected package libgraph-readwrite-perl. 121s Preparing to unpack .../095-libgraph-readwrite-perl_2.10-1_all.deb ... 121s Unpacking libgraph-readwrite-perl (2.10-1) ... 121s Selecting previously unselected package libgraphite2-3:arm64. 121s Preparing to unpack .../096-libgraphite2-3_1.3.14-2_arm64.deb ... 121s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 121s Selecting previously unselected package libharfbuzz0b:arm64. 121s Preparing to unpack .../097-libharfbuzz0b_8.3.0-2_arm64.deb ... 121s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 121s Selecting previously unselected package x11-common. 121s Preparing to unpack .../098-x11-common_1%3a7.7+23ubuntu2_all.deb ... 121s Unpacking x11-common (1:7.7+23ubuntu2) ... 121s Selecting previously unselected package libice6:arm64. 121s Preparing to unpack .../099-libice6_2%3a1.0.10-1build2_arm64.deb ... 121s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 121s Selecting previously unselected package libjpeg-turbo8:arm64. 121s Preparing to unpack .../100-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 121s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 121s Selecting previously unselected package libjpeg8:arm64. 121s Preparing to unpack .../101-libjpeg8_8c-2ubuntu11_arm64.deb ... 121s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 121s Selecting previously unselected package liblapack3:arm64. 121s Preparing to unpack .../102-liblapack3_3.12.0-3_arm64.deb ... 121s Unpacking liblapack3:arm64 (3.12.0-3) ... 121s Selecting previously unselected package liblerc4:arm64. 122s Preparing to unpack .../103-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 122s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 122s Selecting previously unselected package liblog-log4perl-perl. 122s Preparing to unpack .../104-liblog-log4perl-perl_1.57-1_all.deb ... 122s Unpacking liblog-log4perl-perl (1.57-1) ... 122s Selecting previously unselected package libmbedcrypto7:arm64. 122s Preparing to unpack .../105-libmbedcrypto7_2.28.7-1ubuntu1_arm64.deb ... 122s Unpacking libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 122s Selecting previously unselected package libmbedx509-1:arm64. 122s Preparing to unpack .../106-libmbedx509-1_2.28.7-1ubuntu1_arm64.deb ... 122s Unpacking libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 122s Selecting previously unselected package libmbedtls14:arm64. 122s Preparing to unpack .../107-libmbedtls14_2.28.7-1ubuntu1_arm64.deb ... 122s Unpacking libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 122s Selecting previously unselected package libmodule-runtime-conflicts-perl. 122s Preparing to unpack .../108-libmodule-runtime-conflicts-perl_0.003-2_all.deb ... 122s Unpacking libmodule-runtime-conflicts-perl (0.003-2) ... 122s Selecting previously unselected package libpackage-deprecationmanager-perl. 122s Preparing to unpack .../109-libpackage-deprecationmanager-perl_0.18-1_all.deb ... 122s Unpacking libpackage-deprecationmanager-perl (0.18-1) ... 122s Selecting previously unselected package libpackage-stash-xs-perl:arm64. 122s Preparing to unpack .../110-libpackage-stash-xs-perl_0.30-1build2_arm64.deb ... 122s Unpacking libpackage-stash-xs-perl:arm64 (0.30-1build2) ... 122s Selecting previously unselected package libmoose-perl:arm64. 122s Preparing to unpack .../111-libmoose-perl_2.2207-1_arm64.deb ... 122s Unpacking libmoose-perl:arm64 (2.2207-1) ... 122s Selecting previously unselected package libthai-data. 122s Preparing to unpack .../112-libthai-data_0.1.29-2_all.deb ... 122s Unpacking libthai-data (0.1.29-2) ... 122s Selecting previously unselected package libthai0:arm64. 122s Preparing to unpack .../113-libthai0_0.1.29-2_arm64.deb ... 122s Unpacking libthai0:arm64 (0.1.29-2) ... 122s Selecting previously unselected package libpango-1.0-0:arm64. 122s Preparing to unpack .../114-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 122s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 122s Selecting previously unselected package libpangoft2-1.0-0:arm64. 122s Preparing to unpack .../115-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 122s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 122s Selecting previously unselected package libpangocairo-1.0-0:arm64. 122s Preparing to unpack .../116-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 122s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 122s Selecting previously unselected package libpaper1:arm64. 122s Preparing to unpack .../117-libpaper1_1.1.29_arm64.deb ... 122s Unpacking libpaper1:arm64 (1.1.29) ... 122s Selecting previously unselected package libpaper-utils. 122s Preparing to unpack .../118-libpaper-utils_1.1.29_arm64.deb ... 122s Unpacking libpaper-utils (1.1.29) ... 122s Selecting previously unselected package libperlio-utf8-strict-perl. 122s Preparing to unpack .../119-libperlio-utf8-strict-perl_0.010-1build1_arm64.deb ... 122s Unpacking libperlio-utf8-strict-perl (0.010-1build1) ... 122s Selecting previously unselected package libsharpyuv0:arm64. 122s Preparing to unpack .../120-libsharpyuv0_1.3.2-0.4_arm64.deb ... 122s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 122s Selecting previously unselected package libsm6:arm64. 122s Preparing to unpack .../121-libsm6_2%3a1.2.3-1build2_arm64.deb ... 122s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 122s Selecting previously unselected package libtcl8.6:arm64. 122s Preparing to unpack .../122-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 122s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 122s Selecting previously unselected package libtest-file-perl. 122s Preparing to unpack .../123-libtest-file-perl_1.993-1_all.deb ... 122s Unpacking libtest-file-perl (1.993-1) ... 122s Selecting previously unselected package libtest-files-perl. 122s Preparing to unpack .../124-libtest-files-perl_0.15-1_all.deb ... 122s Unpacking libtest-files-perl (0.15-1) ... 122s Selecting previously unselected package libtest-output-perl. 122s Preparing to unpack .../125-libtest-output-perl_1.034-1_all.deb ... 122s Unpacking libtest-output-perl (1.034-1) ... 122s Selecting previously unselected package libtext-csv-perl. 122s Preparing to unpack .../126-libtext-csv-perl_2.04-1_all.deb ... 122s Unpacking libtext-csv-perl (2.04-1) ... 122s Selecting previously unselected package libjbig0:arm64. 122s Preparing to unpack .../127-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 122s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 122s Selecting previously unselected package libwebp7:arm64. 122s Preparing to unpack .../128-libwebp7_1.3.2-0.4_arm64.deb ... 122s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 122s Selecting previously unselected package libtiff6:arm64. 122s Preparing to unpack .../129-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 122s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 122s Selecting previously unselected package libtingea0:arm64. 122s Preparing to unpack .../130-libtingea0_21-361-2_arm64.deb ... 122s Unpacking libtingea0:arm64 (21-361-2) ... 122s Selecting previously unselected package libxft2:arm64. 122s Preparing to unpack .../131-libxft2_2.3.6-1_arm64.deb ... 122s Unpacking libxft2:arm64 (2.3.6-1) ... 123s Selecting previously unselected package libxss1:arm64. 123s Preparing to unpack .../132-libxss1_1%3a1.2.3-1build2_arm64.deb ... 123s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 123s Selecting previously unselected package libtk8.6:arm64. 123s Preparing to unpack .../133-libtk8.6_8.6.13-2_arm64.deb ... 123s Unpacking libtk8.6:arm64 (8.6.13-2) ... 123s Selecting previously unselected package libxt6t64:arm64. 123s Preparing to unpack .../134-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 123s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 123s Selecting previously unselected package mafft. 123s Preparing to unpack .../135-mafft_7.505-1_arm64.deb ... 123s Unpacking mafft (7.505-1) ... 123s Selecting previously unselected package ncbi-data. 123s Preparing to unpack .../136-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 123s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 123s Selecting previously unselected package ncbi-blast+. 123s Preparing to unpack .../137-ncbi-blast+_2.12.0+ds-4_arm64.deb ... 123s Unpacking ncbi-blast+ (2.12.0+ds-4) ... 123s Selecting previously unselected package prank. 123s Preparing to unpack .../138-prank_0.0.170427+dfsg-3_arm64.deb ... 123s Unpacking prank (0.0.170427+dfsg-3) ... 123s Selecting previously unselected package zip. 123s Preparing to unpack .../139-zip_3.0-13_arm64.deb ... 123s Unpacking zip (3.0-13) ... 123s Selecting previously unselected package unzip. 123s Preparing to unpack .../140-unzip_6.0-28ubuntu3_arm64.deb ... 123s Unpacking unzip (6.0-28ubuntu3) ... 123s Selecting previously unselected package xdg-utils. 123s Preparing to unpack .../141-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 123s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 123s Selecting previously unselected package r-base-core. 123s Preparing to unpack .../142-r-base-core_4.3.3-2build1_arm64.deb ... 123s Unpacking r-base-core (4.3.3-2build1) ... 124s Selecting previously unselected package r-cran-cli. 124s Preparing to unpack .../143-r-cran-cli_3.6.2-1_arm64.deb ... 124s Unpacking r-cran-cli (3.6.2-1) ... 124s Selecting previously unselected package r-cran-colorspace. 124s Preparing to unpack .../144-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 124s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 124s Selecting previously unselected package r-cran-fansi. 124s Preparing to unpack .../145-r-cran-fansi_1.0.5-1_arm64.deb ... 124s Unpacking r-cran-fansi (1.0.5-1) ... 124s Selecting previously unselected package r-cran-farver. 124s Preparing to unpack .../146-r-cran-farver_2.1.1-1_arm64.deb ... 124s Unpacking r-cran-farver (2.1.1-1) ... 124s Selecting previously unselected package r-cran-glue. 124s Preparing to unpack .../147-r-cran-glue_1.7.0-1_arm64.deb ... 124s Unpacking r-cran-glue (1.7.0-1) ... 124s Selecting previously unselected package r-cran-rlang. 124s Preparing to unpack .../148-r-cran-rlang_1.1.3-1_arm64.deb ... 124s Unpacking r-cran-rlang (1.1.3-1) ... 124s Selecting previously unselected package r-cran-lifecycle. 124s Preparing to unpack .../149-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 124s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 124s Selecting previously unselected package r-cran-gtable. 124s Preparing to unpack .../150-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 124s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 124s Selecting previously unselected package r-cran-isoband. 124s Preparing to unpack .../151-r-cran-isoband_0.2.7-1_arm64.deb ... 124s Unpacking r-cran-isoband (0.2.7-1) ... 124s Selecting previously unselected package r-cran-mass. 124s Preparing to unpack .../152-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 124s Unpacking r-cran-mass (7.3-60.0.1-1) ... 124s Selecting previously unselected package r-cran-lattice. 124s Preparing to unpack .../153-r-cran-lattice_0.22-5-1_arm64.deb ... 124s Unpacking r-cran-lattice (0.22-5-1) ... 124s Selecting previously unselected package r-cran-nlme. 124s Preparing to unpack .../154-r-cran-nlme_3.1.164-1_arm64.deb ... 124s Unpacking r-cran-nlme (3.1.164-1) ... 124s Selecting previously unselected package r-cran-matrix. 124s Preparing to unpack .../155-r-cran-matrix_1.6-5-1_arm64.deb ... 124s Unpacking r-cran-matrix (1.6-5-1) ... 124s Selecting previously unselected package r-cran-mgcv. 124s Preparing to unpack .../156-r-cran-mgcv_1.9-1-1_arm64.deb ... 124s Unpacking r-cran-mgcv (1.9-1-1) ... 124s Selecting previously unselected package r-cran-labeling. 124s Preparing to unpack .../157-r-cran-labeling_0.4.3-1_all.deb ... 124s Unpacking r-cran-labeling (0.4.3-1) ... 124s Selecting previously unselected package r-cran-munsell. 124s Preparing to unpack .../158-r-cran-munsell_0.5.0-2build1_all.deb ... 124s Unpacking r-cran-munsell (0.5.0-2build1) ... 124s Selecting previously unselected package r-cran-r6. 124s Preparing to unpack .../159-r-cran-r6_2.5.1-1_all.deb ... 124s Unpacking r-cran-r6 (2.5.1-1) ... 124s Selecting previously unselected package r-cran-rcolorbrewer. 124s Preparing to unpack .../160-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 124s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 125s Selecting previously unselected package r-cran-viridislite. 125s Preparing to unpack .../161-r-cran-viridislite_0.4.2-2_all.deb ... 125s Unpacking r-cran-viridislite (0.4.2-2) ... 125s Selecting previously unselected package r-cran-scales. 125s Preparing to unpack .../162-r-cran-scales_1.3.0-1_all.deb ... 125s Unpacking r-cran-scales (1.3.0-1) ... 125s Selecting previously unselected package r-cran-magrittr. 125s Preparing to unpack .../163-r-cran-magrittr_2.0.3-1_arm64.deb ... 125s Unpacking r-cran-magrittr (2.0.3-1) ... 125s Selecting previously unselected package r-cran-utf8. 125s Preparing to unpack .../164-r-cran-utf8_1.2.4-1_arm64.deb ... 125s Unpacking r-cran-utf8 (1.2.4-1) ... 125s Selecting previously unselected package r-cran-vctrs. 125s Preparing to unpack .../165-r-cran-vctrs_0.6.5-1_arm64.deb ... 125s Unpacking r-cran-vctrs (0.6.5-1) ... 125s Selecting previously unselected package r-cran-pillar. 125s Preparing to unpack .../166-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 125s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 125s Selecting previously unselected package r-cran-pkgconfig. 125s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 125s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 125s Selecting previously unselected package r-cran-tibble. 125s Preparing to unpack .../168-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 125s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 125s Selecting previously unselected package r-cran-withr. 125s Preparing to unpack .../169-r-cran-withr_2.5.0-1_all.deb ... 125s Unpacking r-cran-withr (2.5.0-1) ... 125s Selecting previously unselected package r-cran-ggplot2. 125s Preparing to unpack .../170-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 125s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 125s Selecting previously unselected package mcl. 125s Preparing to unpack .../171-mcl_1%3a22-282+ds-2_arm64.deb ... 125s Unpacking mcl (1:22-282+ds-2) ... 125s Selecting previously unselected package parallel. 125s Preparing to unpack .../172-parallel_20231122+ds-1_all.deb ... 125s Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' 125s Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' 125s Unpacking parallel (20231122+ds-1) ... 125s Selecting previously unselected package fasttree. 125s Preparing to unpack .../173-fasttree_2.1.11-2_arm64.deb ... 125s Unpacking fasttree (2.1.11-2) ... 125s Selecting previously unselected package roary. 125s Preparing to unpack .../174-roary_3.13.0+dfsg-1_all.deb ... 125s Unpacking roary (3.13.0+dfsg-1) ... 125s Selecting previously unselected package autopkgtest-satdep. 125s Preparing to unpack .../175-1-autopkgtest-satdep.deb ... 125s Unpacking autopkgtest-satdep (0) ... 125s Setting up libarray-utils-perl (0.5-3) ... 125s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 125s Setting up ncbi-data (6.1.20170106+dfsg1-10) ... 125s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 125s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 125s Setting up libpaper1:arm64 (1.1.29) ... 126s 126s Creating config file /etc/papersize with new version 126s Setting up libfile-slurper-perl (0.014-1) ... 126s Setting up libfile-which-perl (1.27-2) ... 126s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 126s Setting up libparse-yapp-perl (1.21-3) ... 126s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 126s Setting up libdynaloader-functions-perl (0.003-3) ... 126s Setting up libdatrie1:arm64 (0.2.13-3) ... 126s Setting up libtext-glob-perl (0.11-3) ... 126s Setting up libtest-deep-perl (1.204-1) ... 126s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 126s Setting up libxcb-render0:arm64 (1.15-1) ... 126s Setting up mafft (7.505-1) ... 126s Setting up libclone-perl:arm64 (0.46-1build1) ... 126s Setting up libalgorithm-diff-perl (1.201-1) ... 126s Setting up libhtml-tagset-perl (3.20-6) ... 126s Setting up libtest-file-perl (1.993-1) ... 126s Setting up unzip (6.0-28ubuntu3) ... 126s Setting up libheap-perl (0.80-5) ... 126s Setting up liblwp-mediatypes-perl (6.04-2) ... 126s Setting up x11-common (1:7.7+23ubuntu2) ... 126s Setting up libtry-tiny-perl (0.31-2) ... 126s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 126s Setting up libdeflate0:arm64 (1.19-1) ... 126s Setting up perl-openssl-defaults:arm64 (7) ... 126s Setting up libencode-locale-perl (1.05-3) ... 126s Setting up libxcb-shm0:arm64 (1.15-1) ... 126s Setting up libfindbin-libs-perl (3.0.2-1) ... 126s Setting up libpaper-utils (1.1.29) ... 126s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 126s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 126s Setting up libsub-install-perl (0.929-1) ... 126s Setting up libnumber-compare-perl (0.03-3) ... 126s Setting up libio-string-perl (1.08-4) ... 126s Setting up zip (3.0-13) ... 126s Setting up libpackage-stash-xs-perl:arm64 (0.30-1build2) ... 126s Setting up libblas3:arm64 (3.12.0-3) ... 126s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 126s Setting up libclass-data-inheritable-perl (0.08-3) ... 126s Setting up libalgorithm-c3-perl (0.11-2) ... 126s Setting up libset-object-perl (1.42-1build3) ... 126s Setting up liblog-log4perl-perl (1.57-1) ... 126s Setting up libmbedcrypto7:arm64 (2.28.7-1ubuntu1) ... 126s Setting up libtext-diff-perl (1.45-2) ... 126s Setting up libfile-find-rule-perl (0.34-3) ... 126s Setting up libperlio-utf8-strict-perl (0.010-1build1) ... 126s Setting up libxml-writer-perl (0.900-2) ... 126s Setting up libenv-path-perl (0.19-4) ... 126s Setting up fonts-dejavu-mono (2.37-8) ... 126s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 126s Setting up libio-html-perl (1.004-3) ... 126s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 126s Setting up libb-hooks-op-check-perl:arm64 (0.22-2build2) ... 126s Setting up libfile-grep-perl (0.02-3) ... 126s Setting up fonts-dejavu-core (2.37-8) ... 126s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 126s Setting up libparams-util-perl (1.102-2build1) ... 126s Setting up parallel (20231122+ds-1) ... 126s Setting up libspiffy-perl (0.46-1) ... 126s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 126s Setting up libsub-exporter-progressive-perl (0.001013-3) ... 126s Setting up libwebp7:arm64 (1.3.2-0.4) ... 126s Setting up libcapture-tiny-perl (0.48-2) ... 126s Setting up libtimedate-perl (2.3300-2) ... 126s Setting up libreadline8t64:arm64 (8.2-3.1) ... 126s Setting up libdata-stag-perl (0.14-3) ... 126s Setting up libtingea0:arm64 (21-361-2) ... 126s Setting up libsub-uplevel-perl (0.2800-3) ... 126s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 126s Setting up libthai-data (0.1.29-2) ... 126s Setting up libdevel-globaldestruction-perl (0.14-4) ... 126s Setting up fasttree (2.1.11-2) ... 126s Setting up libdevel-stacktrace-perl (2.0500-1) ... 126s Setting up libbio-perl-perl (1.7.8-1) ... 126s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 126s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 126s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 126s Setting up bedtools (2.31.1+dfsg-2) ... 126s Setting up liburi-perl (5.27-1) ... 126s Setting up prank (0.0.170427+dfsg-3) ... 126s Setting up libtext-csv-perl (2.04-1) ... 126s Setting up libnet-ssleay-perl:arm64 (1.94-1) ... 126s Setting up cd-hit (4.8.1-4) ... 126s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 126s Setting up libice6:arm64 (2:1.0.10-1build2) ... 126s Setting up libhttp-date-perl (6.06-1) ... 126s Setting up liblapack3:arm64 (3.12.0-3) ... 126s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 126s Setting up libfile-listing-perl (6.16-1) ... 126s Setting up libmbedx509-1:arm64 (2.28.7-1ubuntu1) ... 126s Setting up libmbedtls14:arm64 (2.28.7-1ubuntu1) ... 126s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 126s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 127s Setting up libtest-warn-perl (0.37-2) ... 127s Setting up libtest-differences-perl (0.71-1) ... 127s Setting up libnet-http-perl (6.23-1) ... 127s Setting up libexception-class-perl (1.45-1) ... 127s Setting up libio-all-perl (0.87-2) ... 127s Setting up libclass-c3-perl (0.35-2) ... 127s Setting up libgraph-perl (1:0.9727-1) ... 127s Setting up libdevel-callchecker-perl:arm64 (0.008-2build1) ... 127s Setting up libtest-files-perl (0.15-1) ... 127s Setting up ncbi-blast+ (2.12.0+ds-4) ... 127s Setting up libthai0:arm64 (0.1.29-2) ... 127s Setting up libtest-exception-perl (0.43-3) ... 127s Setting up mcl (1:22-282+ds-2) ... 127s Setting up libdata-optlist-perl (0.114-1) ... 127s Setting up libtest-output-perl (1.034-1) ... 127s Setting up libwww-robotrules-perl (6.02-1) ... 127s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 127s Setting up libhtml-parser-perl:arm64 (3.81-1build1) ... 127s Setting up curl (8.5.0-2ubuntu7) ... 127s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 127s Setting up libmro-compat-perl (0.15-2) ... 127s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 127s Setting up libio-socket-ssl-perl (2.085-1) ... 127s Setting up libsub-exporter-perl (0.990-1) ... 127s Setting up libhttp-message-perl (6.45-1ubuntu1) ... 127s Setting up libeval-closure-perl (0.14-3) ... 127s Setting up libhttp-negotiate-perl (6.01-2) ... 127s Setting up fontconfig (2.15.0-1ubuntu1) ... 129s Regenerating fonts cache... done. 129s Setting up libxft2:arm64 (2.3.6-1) ... 129s Setting up libhttp-cookies-perl (6.11-1) ... 129s Setting up libtest-most-perl (0.38-1) ... 129s Setting up libhtml-tree-perl (5.07-3) ... 129s Setting up libtk8.6:arm64 (8.6.13-2) ... 129s Setting up libparams-classify-perl:arm64 (0.015-2build3) ... 129s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 129s Setting up libcairo2:arm64 (1.18.0-1) ... 129s Setting up libmodule-runtime-perl (0.016-2) ... 129s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 129s Setting up libdist-checkconflicts-perl (0.11-2) ... 129s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 129s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 129s Setting up bioperl (1.7.8-1) ... 129s Setting up libmodule-implementation-perl (0.09-2) ... 129s Setting up libpackage-stash-perl (0.40-1) ... 129s Setting up libmodule-runtime-conflicts-perl (0.003-2) ... 129s Setting up libclass-load-perl (0.25-2) ... 129s Setting up r-base-core (4.3.3-2build1) ... 129s 129s Creating config file /etc/R/Renviron with new version 129s Setting up r-cran-labeling (0.4.3-1) ... 129s Setting up r-cran-lattice (0.22-5-1) ... 129s Setting up r-cran-nlme (3.1.164-1) ... 129s Setting up r-cran-farver (2.1.1-1) ... 129s Setting up libpackage-deprecationmanager-perl (0.18-1) ... 129s Setting up r-cran-viridislite (0.4.2-2) ... 129s Setting up libdevel-overloadinfo-perl (0.007-1) ... 129s Setting up libclass-load-xs-perl (0.10-2build2) ... 129s Setting up r-cran-r6 (2.5.1-1) ... 129s Setting up r-cran-magrittr (2.0.3-1) ... 129s Setting up r-cran-rlang (1.1.3-1) ... 129s Setting up r-cran-withr (2.5.0-1) ... 129s Setting up libmoose-perl:arm64 (2.2207-1) ... 129s Setting up r-cran-fansi (1.0.5-1) ... 129s Setting up r-cran-mass (7.3-60.0.1-1) ... 129s Setting up r-cran-glue (1.7.0-1) ... 129s Setting up r-cran-cli (3.6.2-1) ... 129s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 129s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 129s Setting up r-cran-utf8 (1.2.4-1) ... 129s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 129s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 129s Setting up r-cran-isoband (0.2.7-1) ... 129s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 129s Setting up r-cran-matrix (1.6-5-1) ... 129s Setting up r-cran-mgcv (1.9-1-1) ... 129s Setting up r-cran-vctrs (0.6.5-1) ... 129s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 129s Setting up r-cran-munsell (0.5.0-2build1) ... 129s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 129s Setting up r-cran-scales (1.3.0-1) ... 129s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 129s Setting up liblwp-protocol-https-perl (6.13-1) ... 129s Setting up libwww-perl (6.76-1) ... 129s Setting up libdigest-md5-file-perl (0.08-1.1) ... 129s Setting up libxml-parser-perl (2.47-1build1) ... 129s Setting up libgraph-readwrite-perl (2.10-1) ... 129s Setting up roary (3.13.0+dfsg-1) ... 129s Setting up autopkgtest-satdep (0) ... 129s Processing triggers for libc-bin (2.39-0ubuntu2) ... 129s Processing triggers for man-db (2.12.0-3) ... 130s Processing triggers for install-info (7.1-3) ... 141s (Reading database ... 83877 files and directories currently installed.) 141s Removing autopkgtest-satdep (0) ... 141s autopkgtest [21:22:38]: test test-installed: [----------------------- 142s 142s Please cite Roary if you use any of the results it produces: 142s Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill, 142s "Roary: Rapid large-scale prokaryote pan genome analysis", Bioinformatics, 2015 Nov 15;31(22):3691-3693 142s doi: http://doi.org/10.1093/bioinformatics/btv421 142s Pubmed: 26198102 142s 146s autopkgtest [21:22:43]: test test-installed: -----------------------] 146s autopkgtest [21:22:43]: test test-installed: - - - - - - - - - - results - - - - - - - - - - 146s test-installed PASS 147s autopkgtest [21:22:44]: @@@@@@@@@@@@@@@@@@@@ summary 147s test-installed PASS 150s Creating nova instance adt-noble-arm64-roary-20240316-212017-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...