0s autopkgtest [11:49:23]: starting date and time: 2024-03-19 11:49:23+0000 0s autopkgtest [11:49:23]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [11:49:23]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q3jygrz_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python3.12,src:db5.3,src:openssl,src:readline --apt-upgrade rdkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3.12/3.12.2-4build3 db5.3/5.3.28+dfsg2-5build1 openssl/3.0.13-0ubuntu2 readline/8.2-3.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-44.secgroup --name adt-noble-arm64-rdkit-20240319-114922-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 138s autopkgtest [11:51:41]: testbed dpkg architecture: arm64 138s autopkgtest [11:51:41]: testbed apt version: 2.7.12 138s autopkgtest [11:51:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 139s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [486 kB] 140s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 140s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.7 kB] 140s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3768 kB] 141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [659 kB] 142s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 142s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 142s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 142s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4142 kB] 142s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 142s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [56.7 kB] 142s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 144s Fetched 9334 kB in 4s (2354 kB/s) 145s Reading package lists... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s Calculating upgrade... 148s The following packages will be REMOVED: 148s libreadline8 libssl3 148s The following NEW packages will be installed: 148s libreadline8t64 libssl3t64 148s The following packages have been kept back: 148s libpython3.12-minimal libpython3.12-stdlib python3.12 python3.12-minimal 148s The following packages will be upgraded: 148s openssl readline-common 149s 2 upgraded, 2 newly installed, 2 to remove and 4 not upgraded. 149s Need to get 2987 kB of archives. 149s After this operation, 207 kB of additional disk space will be used. 149s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 149s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 149s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 150s Fetched 2987 kB in 1s (3020 kB/s) 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 150s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 150s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 150s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 150s parted depends on libreadline8 (>= 6.0). 150s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 150s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 150s gpgsm depends on libreadline8 (>= 6.0). 150s gpgconf depends on libreadline8 (>= 6.0). 150s gpg depends on libreadline8 (>= 6.0). 150s gawk depends on libreadline8 (>= 6.0). 150s fdisk depends on libreadline8 (>= 6.0). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 150s Removing libreadline8:arm64 (8.2-3) ... 150s Selecting previously unselected package libreadline8t64:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75838 files and directories currently installed.) 150s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 150s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 150s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 150s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 150s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 150s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 150s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 150s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 150s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 150s wget depends on libssl3 (>= 3.0.0). 150s u-boot-tools depends on libssl3 (>= 3.0.0). 150s tnftp depends on libssl3 (>= 3.0.0). 150s tcpdump depends on libssl3 (>= 3.0.0). 150s systemd-resolved depends on libssl3 (>= 3.0.0). 150s systemd depends on libssl3 (>= 3.0.0). 150s sudo depends on libssl3 (>= 3.0.0). 150s sbsigntool depends on libssl3 (>= 3.0.0). 150s rsync depends on libssl3 (>= 3.0.0). 150s python3-cryptography depends on libssl3 (>= 3.0.0). 150s openssh-server depends on libssl3 (>= 3.0.10). 150s openssh-client depends on libssl3 (>= 3.0.10). 150s mtd-utils depends on libssl3 (>= 3.0.0). 150s mokutil depends on libssl3 (>= 3.0.0). 150s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 150s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 150s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 150s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 150s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 150s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 150s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 150s libnvme1 depends on libssl3 (>= 3.0.0). 150s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 150s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 150s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 150s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 150s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 150s kmod depends on libssl3 (>= 3.0.0). 150s dhcpcd-base depends on libssl3 (>= 3.0.0). 150s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 150s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 150s Selecting previously unselected package libssl3t64:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 150s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 150s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 150s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 150s Setting up openssl (3.0.13-0ubuntu2) ... 150s Setting up readline-common (8.2-3.1) ... 150s Setting up libreadline8t64:arm64 (8.2-3.1) ... 150s Processing triggers for libc-bin (2.39-0ubuntu2) ... 150s Processing triggers for man-db (2.12.0-3) ... 151s Processing triggers for install-info (7.1-3) ... 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s 0 upgraded, 0 newly installed, 0 to remove and 4 not upgraded. 153s sh: Attempting to set up Debian/Ubuntu apt sources automatically 153s sh: Distribution appears to be Ubuntu 153s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s eatmydata is already the newest version (131-1). 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s dbus is already the newest version (1.14.10-4ubuntu1). 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s rng-tools-debian is already the newest version (2.4). 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s The following packages will be REMOVED: 156s cloud-init* python3-configobj* python3-debconf* 156s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 156s After this operation, 3252 kB disk space will be freed. 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75860 files and directories currently installed.) 156s Removing cloud-init (24.1.1-0ubuntu1) ... 157s Removing python3-configobj (5.0.8-3) ... 157s Removing python3-debconf (1.5.86) ... 157s Processing triggers for man-db (2.12.0-3) ... 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75471 files and directories currently installed.) 157s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 158s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 158s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 158s invoke-rc.d: policy-rc.d denied execution of try-restart. 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s linux-generic is already the newest version (6.8.0-11.11+1). 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 159s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 159s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 161s Reading package lists... 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 163s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 163s autopkgtest [11:52:06]: rebooting testbed after setup commands that affected boot 313s autopkgtest [11:54:36]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 315s autopkgtest [11:54:38]: @@@@@@@@@@@@@@@@@@@@ apt-source rdkit 324s Get:1 http://ftpmaster.internal/ubuntu noble/universe rdkit 202309.3-3 (dsc) [2884 B] 324s Get:2 http://ftpmaster.internal/ubuntu noble/universe rdkit 202309.3-3 (tar) [61.9 MB] 324s Get:3 http://ftpmaster.internal/ubuntu noble/universe rdkit 202309.3-3 (diff) [24.9 kB] 324s gpgv: Signature made Wed Feb 28 09:56:29 2024 UTC 324s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 324s gpgv: issuer "merkys@debian.org" 324s gpgv: Can't check signature: No public key 324s dpkg-source: warning: cannot verify inline signature for ./rdkit_202309.3-3.dsc: no acceptable signature found 327s autopkgtest [11:54:50]: testing package rdkit version 202309.3-3 328s autopkgtest [11:54:51]: build not needed 336s autopkgtest [11:54:59]: test installcheck: preparing testbed 338s Reading package lists... 338s Building dependency tree... 338s Reading state information... 338s Starting pkgProblemResolver with broken count: 0 338s Starting 2 pkgProblemResolver with broken count: 0 338s Done 339s The following additional packages will be installed: 339s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 339s libboost-python1.83.0 libboost-serialization1.83.0 libcairo2 libcoordgen3 339s libfontconfig1 libgfortran5 libjs-jquery libjs-underscore libjson-perl 339s liblapack3 libllvm17 libmaeparser1 libpixman-1-0 libpq5 libpython3.12 339s librdkit-dev librdkit1 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 339s postgresql-16 postgresql-16-rdkit postgresql-client-16 339s postgresql-client-common postgresql-common python3-numpy python3-rdkit 339s rdkit-data rdkit-doc ssl-cert 339s Suggested packages: 339s postgresql-doc-16 gcc gfortran python3-dev python3-pytest 339s Recommended packages: 339s javascript-common libjson-xs-perl 339s The following NEW packages will be installed: 339s autopkgtest-satdep fontconfig-config fonts-freefont-ttf libblas3 339s libboost-iostreams1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 339s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libjs-jquery 339s libjs-underscore libjson-perl liblapack3 libllvm17 libmaeparser1 339s libpixman-1-0 libpq5 libpython3.12 librdkit-dev librdkit1 libxcb-render0 339s libxcb-shm0 libxrender1 libxslt1.1 postgresql-16 postgresql-16-rdkit 339s postgresql-client-16 postgresql-client-common postgresql-common 339s python3-numpy python3-rdkit rdkit-data rdkit-doc ssl-cert 339s 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. 339s Need to get 91.5 MB/91.5 MB of archives. 339s After this operation, 446 MB of additional disk space will be used. 339s Get:1 /tmp/autopkgtest.wNn5Jh/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 339s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 339s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 postgresql-client-common all 257 [36.2 kB] 339s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ssl-cert all 1.1.2ubuntu1 [17.8 kB] 339s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 postgresql-common all 257 [162 kB] 339s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 340s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 340s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 340s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-2ubuntu1 [339 kB] 340s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-python1.83.0 arm64 1.83.0-2ubuntu1 [457 kB] 340s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-serialization1.83.0 arm64 1.83.0-2ubuntu1 [434 kB] 340s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 340s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 340s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 340s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 340s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 340s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 340s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libcoordgen3 arm64 3.0.2-1 [207 kB] 340s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 340s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 340s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 340s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 340s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 341s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 341s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 341s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12 arm64 3.12.2-1 [2291 kB] 341s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 librdkit1 arm64 202309.3-3 [4841 kB] 342s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 librdkit-dev arm64 202309.3-3 [305 kB] 342s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxslt1.1 arm64 1.1.35-1 [161 kB] 342s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 postgresql-client-16 arm64 16.2-1 [1260 kB] 342s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 postgresql-16 arm64 16.2-1 [15.2 MB] 343s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 postgresql-16-rdkit arm64 202309.3-3 [380 kB] 343s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] 343s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 rdkit-data all 202309.3-3 [12.6 MB] 344s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-rdkit arm64 202309.3-3 [4608 kB] 344s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 rdkit-doc all 202309.3-3 [8435 kB] 345s Preconfiguring packages ... 345s Fetched 91.5 MB in 6s (16.0 MB/s) 345s Selecting previously unselected package libjson-perl. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75416 files and directories currently installed.) 345s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 345s Unpacking libjson-perl (4.10000-1) ... 345s Selecting previously unselected package postgresql-client-common. 345s Preparing to unpack .../01-postgresql-client-common_257_all.deb ... 345s Unpacking postgresql-client-common (257) ... 345s Selecting previously unselected package ssl-cert. 345s Preparing to unpack .../02-ssl-cert_1.1.2ubuntu1_all.deb ... 345s Unpacking ssl-cert (1.1.2ubuntu1) ... 345s Selecting previously unselected package postgresql-common. 345s Preparing to unpack .../03-postgresql-common_257_all.deb ... 345s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 345s Unpacking postgresql-common (257) ... 345s Selecting previously unselected package fonts-freefont-ttf. 345s Preparing to unpack .../04-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 345s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 345s Selecting previously unselected package fontconfig-config. 345s Preparing to unpack .../05-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 346s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 346s Selecting previously unselected package libblas3:arm64. 346s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 346s Unpacking libblas3:arm64 (3.12.0-3) ... 346s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 346s Preparing to unpack .../07-libboost-iostreams1.83.0_1.83.0-2ubuntu1_arm64.deb ... 346s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-2ubuntu1) ... 346s Selecting previously unselected package libboost-python1.83.0. 346s Preparing to unpack .../08-libboost-python1.83.0_1.83.0-2ubuntu1_arm64.deb ... 346s Unpacking libboost-python1.83.0 (1.83.0-2ubuntu1) ... 346s Selecting previously unselected package libboost-serialization1.83.0:arm64. 346s Preparing to unpack .../09-libboost-serialization1.83.0_1.83.0-2ubuntu1_arm64.deb ... 346s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-2ubuntu1) ... 346s Selecting previously unselected package libfontconfig1:arm64. 346s Preparing to unpack .../10-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 346s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 346s Selecting previously unselected package libpixman-1-0:arm64. 346s Preparing to unpack .../11-libpixman-1-0_0.42.2-1_arm64.deb ... 346s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 346s Selecting previously unselected package libxcb-render0:arm64. 346s Preparing to unpack .../12-libxcb-render0_1.15-1_arm64.deb ... 346s Unpacking libxcb-render0:arm64 (1.15-1) ... 346s Selecting previously unselected package libxcb-shm0:arm64. 346s Preparing to unpack .../13-libxcb-shm0_1.15-1_arm64.deb ... 346s Unpacking libxcb-shm0:arm64 (1.15-1) ... 346s Selecting previously unselected package libxrender1:arm64. 346s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 346s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 346s Selecting previously unselected package libcairo2:arm64. 346s Preparing to unpack .../15-libcairo2_1.18.0-1_arm64.deb ... 346s Unpacking libcairo2:arm64 (1.18.0-1) ... 346s Selecting previously unselected package libcoordgen3:arm64. 346s Preparing to unpack .../16-libcoordgen3_3.0.2-1_arm64.deb ... 346s Unpacking libcoordgen3:arm64 (3.0.2-1) ... 346s Selecting previously unselected package libgfortran5:arm64. 346s Preparing to unpack .../17-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 346s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 346s Selecting previously unselected package libjs-jquery. 346s Preparing to unpack .../18-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 346s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 346s Selecting previously unselected package libjs-underscore. 346s Preparing to unpack .../19-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 346s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 346s Selecting previously unselected package liblapack3:arm64. 346s Preparing to unpack .../20-liblapack3_3.12.0-3_arm64.deb ... 346s Unpacking liblapack3:arm64 (3.12.0-3) ... 346s Selecting previously unselected package libllvm17:arm64. 346s Preparing to unpack .../21-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 346s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 347s Selecting previously unselected package libmaeparser1:arm64. 347s Preparing to unpack .../22-libmaeparser1_1.3.1-1build1_arm64.deb ... 347s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 347s Selecting previously unselected package libpq5:arm64. 347s Preparing to unpack .../23-libpq5_16.2-1_arm64.deb ... 347s Unpacking libpq5:arm64 (16.2-1) ... 347s Selecting previously unselected package libpython3.12:arm64. 347s Preparing to unpack .../24-libpython3.12_3.12.2-1_arm64.deb ... 347s Unpacking libpython3.12:arm64 (3.12.2-1) ... 347s Selecting previously unselected package librdkit1. 347s Preparing to unpack .../25-librdkit1_202309.3-3_arm64.deb ... 347s Unpacking librdkit1 (202309.3-3) ... 347s Selecting previously unselected package librdkit-dev. 347s Preparing to unpack .../26-librdkit-dev_202309.3-3_arm64.deb ... 347s Unpacking librdkit-dev (202309.3-3) ... 347s Selecting previously unselected package libxslt1.1:arm64. 347s Preparing to unpack .../27-libxslt1.1_1.1.35-1_arm64.deb ... 347s Unpacking libxslt1.1:arm64 (1.1.35-1) ... 347s Selecting previously unselected package postgresql-client-16. 347s Preparing to unpack .../28-postgresql-client-16_16.2-1_arm64.deb ... 347s Unpacking postgresql-client-16 (16.2-1) ... 347s Selecting previously unselected package postgresql-16. 347s Preparing to unpack .../29-postgresql-16_16.2-1_arm64.deb ... 347s Unpacking postgresql-16 (16.2-1) ... 348s Selecting previously unselected package postgresql-16-rdkit. 348s Preparing to unpack .../30-postgresql-16-rdkit_202309.3-3_arm64.deb ... 348s Unpacking postgresql-16-rdkit (202309.3-3) ... 348s Selecting previously unselected package python3-numpy. 348s Preparing to unpack .../31-python3-numpy_1%3a1.24.2-2_arm64.deb ... 348s Unpacking python3-numpy (1:1.24.2-2) ... 348s Selecting previously unselected package rdkit-data. 348s Preparing to unpack .../32-rdkit-data_202309.3-3_all.deb ... 348s Unpacking rdkit-data (202309.3-3) ... 348s Selecting previously unselected package python3-rdkit. 348s Preparing to unpack .../33-python3-rdkit_202309.3-3_arm64.deb ... 348s Unpacking python3-rdkit (202309.3-3) ... 349s Selecting previously unselected package rdkit-doc. 349s Preparing to unpack .../34-rdkit-doc_202309.3-3_all.deb ... 349s Unpacking rdkit-doc (202309.3-3) ... 349s Selecting previously unselected package autopkgtest-satdep. 349s Preparing to unpack .../35-1-autopkgtest-satdep.deb ... 349s Unpacking autopkgtest-satdep (0) ... 350s Setting up postgresql-client-common (257) ... 350s Setting up libboost-python1.83.0 (1.83.0-2ubuntu1) ... 350s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 350s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 350s Setting up libxcb-render0:arm64 (1.15-1) ... 350s Setting up libpq5:arm64 (16.2-1) ... 350s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 350s Setting up libxcb-shm0:arm64 (1.15-1) ... 350s Setting up rdkit-data (202309.3-3) ... 350s Setting up libboost-serialization1.83.0:arm64 (1.83.0-2ubuntu1) ... 350s Setting up libblas3:arm64 (3.12.0-3) ... 350s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 350s Setting up ssl-cert (1.1.2ubuntu1) ... 350s Created symlink /etc/systemd/system/multi-user.target.wants/ssl-cert.service → /usr/lib/systemd/system/ssl-cert.service. 351s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-2ubuntu1) ... 351s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 351s Setting up libjson-perl (4.10000-1) ... 351s Setting up libxslt1.1:arm64 (1.1.35-1) ... 351s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 351s Setting up libcoordgen3:arm64 (3.0.2-1) ... 351s Setting up libllvm17:arm64 (1:17.0.6-5build1) ... 351s Setting up libpython3.12:arm64 (3.12.2-1) ... 351s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 351s Setting up liblapack3:arm64 (3.12.0-3) ... 351s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 351s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 351s Setting up postgresql-client-16 (16.2-1) ... 351s update-alternatives: using /usr/share/postgresql/16/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 351s Setting up rdkit-doc (202309.3-3) ... 351s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 351s Setting up postgresql-common (257) ... 351s 351s Creating config file /etc/postgresql-common/createcluster.conf with new version 352s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 352s Removing obsolete dictionary files: 352s Created symlink /etc/systemd/system/multi-user.target.wants/postgresql.service → /usr/lib/systemd/system/postgresql.service. 353s Setting up python3-numpy (1:1.24.2-2) ... 354s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 354s Setting up postgresql-16 (16.2-1) ... 355s Creating new PostgreSQL cluster 16/main ... 355s /usr/lib/postgresql/16/bin/initdb -D /var/lib/postgresql/16/main --auth-local peer --auth-host scram-sha-256 --no-instructions 355s The files belonging to this database system will be owned by user "postgres". 355s This user must also own the server process. 355s 355s The database cluster will be initialized with locale "C.UTF-8". 355s The default database encoding has accordingly been set to "UTF8". 355s The default text search configuration will be set to "english". 355s 355s Data page checksums are disabled. 355s 355s fixing permissions on existing directory /var/lib/postgresql/16/main ... ok 355s creating subdirectories ... ok 355s selecting dynamic shared memory implementation ... posix 355s selecting default max_connections ... 100 355s selecting default shared_buffers ... 128MB 355s selecting default time zone ... Etc/UTC 355s creating configuration files ... ok 355s running bootstrap script ... ok 355s performing post-bootstrap initialization ... ok 355s syncing data to disk ... ok 359s Setting up libcairo2:arm64 (1.18.0-1) ... 359s Setting up librdkit1 (202309.3-3) ... 359s Setting up python3-rdkit (202309.3-3) ... 359s Setting up librdkit-dev (202309.3-3) ... 359s Setting up postgresql-16-rdkit (202309.3-3) ... 359s Setting up autopkgtest-satdep (0) ... 359s Processing triggers for man-db (2.12.0-3) ... 360s Processing triggers for libc-bin (2.39-0ubuntu2) ... 364s (Reading database ... 84738 files and directories currently installed.) 364s Removing autopkgtest-satdep (0) ... 364s autopkgtest [11:55:27]: test installcheck: [----------------------- 365s ### PostgreSQL 16 installcheck ### 365s Creating new PostgreSQL cluster 16/regress ... 367s make: Entering directory '/tmp/autopkgtest.wNn5Jh/build.dhf/src/Code/PgSQL/rdkit' 367s echo "# +++ regress install-check in +++" && /usr/lib/postgresql/16/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress --inputdir=/tmp/autopkgtest.wNn5Jh/build.dhf/src --bindir='/usr/lib/postgresql/16/bin' --dbname=contrib_regression rdkit-91 props btree molgist bfpgist-91 bfpgin sfpgist slfpgist fps reaction fmcs query xqm 367s # +++ regress install-check in +++ 367s # using postmaster on localhost, port 5433 370s ok 1 - rdkit-91 2564 ms 370s ok 2 - props 76 ms 371s ok 3 - btree 435 ms 372s ok 4 - molgist 1428 ms 372s ok 5 - bfpgist-91 158 ms 372s ok 6 - bfpgin 159 ms 372s ok 7 - sfpgist 69 ms 372s ok 8 - slfpgist 73 ms 373s ok 9 - fps 76 ms 375s ok 10 - reaction 2892 ms 376s ok 11 - fmcs 188 ms 376s ok 12 - query 46 ms 376s ok 13 - xqm 227 ms 376s 1..13 376s # All 13 tests passed. 376s make: Leaving directory '/tmp/autopkgtest.wNn5Jh/build.dhf/src/Code/PgSQL/rdkit' 376s Dropping cluster 16/regress ... 376s ### End 16 installcheck ### 376s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 376s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 377s autopkgtest [11:55:40]: test installcheck: -----------------------] 377s autopkgtest [11:55:40]: test installcheck: - - - - - - - - - - results - - - - - - - - - - 377s installcheck PASS 377s autopkgtest [11:55:40]: @@@@@@@@@@@@@@@@@@@@ summary 377s installcheck PASS 393s Creating nova instance adt-noble-arm64-rdkit-20240319-114922-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID bd25b89b-8264-4402-95d9-d9c88f21f275)...