0s autopkgtest [20:57:51]: starting date and time: 2024-03-16 20:57:51+0000 0s autopkgtest [20:57:51]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [20:57:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0hvh9vn5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-other-rajewsky-dropbead --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-5.secgroup --name adt-noble-arm64-r-other-rajewsky-dropbead-20240316-205751-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 245s autopkgtest [21:01:56]: testbed dpkg architecture: arm64 245s autopkgtest [21:01:56]: testbed apt version: 2.7.12 245s autopkgtest [21:01:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 245s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 246s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 246s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 246s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3703 kB] 246s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 246s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 246s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 246s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 246s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 246s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4017 kB] 246s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 246s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 246s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 248s Fetched 9115 kB in 2s (5624 kB/s) 248s Reading package lists... 251s Reading package lists... 251s Building dependency tree... 251s Reading state information... 251s Calculating upgrade... 252s The following packages will be REMOVED: 252s libglib2.0-0 libssl3 252s The following NEW packages will be installed: 252s libglib2.0-0t64 libssl3t64 xdg-user-dirs 252s The following packages have been kept back: 252s curl 252s The following packages will be upgraded: 252s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 252s ubuntu-minimal ubuntu-standard 252s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 252s Need to get 4613 kB of archives. 252s After this operation, 211 kB of additional disk space will be used. 252s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 252s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 252s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 252s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 253s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 253s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 253s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 253s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 253s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 253s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 253s Fetched 4613 kB in 1s (6317 kB/s) 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 253s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 253s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 253s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 253s udisks2 depends on libglib2.0-0 (>= 2.77.0). 253s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 253s python3-gi depends on libglib2.0-0 (>= 2.77.0). 253s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 253s netplan.io depends on libglib2.0-0 (>= 2.70.0). 253s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 253s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 253s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 253s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 253s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 253s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 253s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 253s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 253s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 253s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 253s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 253s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 253s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 253s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 253s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 253s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 253s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 253s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 253s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 253s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 253s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 253s fwupd depends on libglib2.0-0 (>= 2.79.0). 253s bolt depends on libglib2.0-0 (>= 2.56.0). 253s 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 253s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 253s Selecting previously unselected package libglib2.0-0t64:arm64. 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 254s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 254s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 254s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 254s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 254s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 254s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 254s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 254s wget depends on libssl3 (>= 3.0.0). 254s u-boot-tools depends on libssl3 (>= 3.0.0). 254s tnftp depends on libssl3 (>= 3.0.0). 254s tcpdump depends on libssl3 (>= 3.0.0). 254s systemd-resolved depends on libssl3 (>= 3.0.0). 254s systemd depends on libssl3 (>= 3.0.0). 254s sudo depends on libssl3 (>= 3.0.0). 254s sbsigntool depends on libssl3 (>= 3.0.0). 254s rsync depends on libssl3 (>= 3.0.0). 254s python3-cryptography depends on libssl3 (>= 3.0.0). 254s openssh-server depends on libssl3 (>= 3.0.10). 254s openssh-client depends on libssl3 (>= 3.0.10). 254s mtd-utils depends on libssl3 (>= 3.0.0). 254s mokutil depends on libssl3 (>= 3.0.0). 254s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 254s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 254s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 254s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 254s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 254s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 254s libnvme1 depends on libssl3 (>= 3.0.0). 254s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 254s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 254s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 254s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 254s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 254s kmod depends on libssl3 (>= 3.0.0). 254s dhcpcd-base depends on libssl3 (>= 3.0.0). 254s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 254s 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 254s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 254s Selecting previously unselected package libssl3t64:arm64. 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 254s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 254s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 254s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 254s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 254s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 254s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 254s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 254s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 254s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 254s Unpacking ubuntu-minimal (1.536) over (1.535) ... 254s Selecting previously unselected package xdg-user-dirs. 254s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 254s Unpacking xdg-user-dirs (0.18-1) ... 254s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 254s Unpacking ubuntu-standard (1.536) over (1.535) ... 254s Setting up ubuntu-minimal (1.536) ... 254s Setting up xdg-user-dirs (0.18-1) ... 254s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 254s Setting up libtirpc-common (1.3.4+ds-1.1) ... 254s Setting up ubuntu-standard (1.536) ... 254s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 254s No schema files found: doing nothing. 254s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 254s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 254s Setting up openssl (3.0.13-0ubuntu1) ... 254s Setting up readline-common (8.2-3.1) ... 254s Processing triggers for man-db (2.12.0-3) ... 255s Processing triggers for install-info (7.1-3) ... 255s Processing triggers for libc-bin (2.39-0ubuntu2) ... 255s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 257s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 257s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 257s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 257s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 258s Reading package lists... 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 259s Calculating upgrade... 259s The following packages have been kept back: 259s curl 259s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 259s Reading package lists... 259s Building dependency tree... 259s Reading state information... 260s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 263s autopkgtest [21:02:14]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 263s autopkgtest [21:02:14]: @@@@@@@@@@@@@@@@@@@@ apt-source r-other-rajewsky-dropbead 265s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-other-rajewsky-dropbead 0.3.1+git20180221.d746c6f+ds-3 (dsc) [2420 B] 265s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-other-rajewsky-dropbead 0.3.1+git20180221.d746c6f+ds-3 (tar) [956 kB] 265s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-other-rajewsky-dropbead 0.3.1+git20180221.d746c6f+ds-3 (diff) [2876 B] 265s gpgv: Signature made Sat Sep 19 20:27:19 2020 UTC 265s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 265s gpgv: issuer "tille@debian.org" 265s gpgv: Can't check signature: No public key 265s dpkg-source: warning: cannot verify inline signature for ./r-other-rajewsky-dropbead_0.3.1+git20180221.d746c6f+ds-3.dsc: no acceptable signature found 265s autopkgtest [21:02:16]: testing package r-other-rajewsky-dropbead version 0.3.1+git20180221.d746c6f+ds-3 266s autopkgtest [21:02:17]: build not needed 267s autopkgtest [21:02:18]: test pkg-r-autopkgtest: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 269s Starting pkgProblemResolver with broken count: 0 269s Starting 2 pkgProblemResolver with broken count: 0 269s Done 269s The following additional packages will be installed: 269s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 269s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 269s fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu 269s gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran 269s gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 269s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev 269s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 269s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 269s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 269s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 269s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 269s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 269s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 269s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 269s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 269s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev 269s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 269s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 269s libxss1 libxt6t64 linux-libc-dev littler pkg-config pkg-r-autopkgtest 269s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics 269s r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb 269s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib 269s r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh 269s r-cran-bitops r-cran-catools r-cran-cli r-cran-codetools r-cran-colorspace 269s r-cran-cpp11 r-cran-crayon r-cran-data.table r-cran-fansi r-cran-farver 269s r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-gdata 269s r-cran-ggplot2 r-cran-glue r-cran-gplots r-cran-gridextra r-cran-gtable 269s r-cran-gtools r-cran-isoband r-cran-kernsmooth r-cran-labeling 269s r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler 269s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-munsell 269s r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr 269s r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang 269s r-cran-scales r-cran-snow r-cran-tibble r-cran-utf8 r-cran-vctrs 269s r-cran-viridislite r-cran-withr r-other-rajewsky-dropbead rpcsvc-proto unzip 269s x11-common xdg-utils zip zlib1g-dev 269s Suggested packages: 269s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 269s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 269s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 269s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 269s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 269s libboost-contract1.83-dev libboost-coroutine1.83-dev 269s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 269s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 269s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 269s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 269s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 269s libboost-numpy1.83-dev libboost-program-options1.83-dev 269s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 269s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 269s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 269s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 269s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 269s glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 269s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 269s texlive-base texlive-latex-base texlive-plain-generic 269s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 269s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase 269s r-bioc-delayedarray r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 269s r-bioc-annotate r-cran-runit r-cran-foreach r-cran-bbmisc r-cran-doparallel 269s r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread 269s r-bioc-biocstyle r-cran-knitr r-cran-batchtools r-bioc-bsgenome 269s r-bioc-genomicfeatures r-cran-r.utils r-bioc-summarizedexperiment 269s r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 269s r-bioc-edger r-bioc-keggrest r-cran-digest r-cran-rmarkdown r-bioc-graph 269s r-cran-rpart r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny 269s r-cran-shinyjs r-cran-dplyr r-cran-png r-cran-jpeg r-cran-viridis 269s r-cran-rstudioapi r-cran-covr r-cran-jsonlite r-cran-magick r-cran-sf 269s r-cran-getopt r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime 269s r-cran-palmerpenguins r-cran-stringi r-cran-survival r-cran-units 269s r-cran-vdiffr r-cran-testthat r-cran-inline r-cran-rmpi r-cran-rlecuyer 269s r-cran-bench r-cran-blob r-cran-brio r-cran-callr r-cran-evaluate 269s r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild r-cran-pkgload 269s r-cran-purrr r-cran-tidyr 269s Recommended packages: 269s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 269s r-doc-html r-cran-callr r-cran-covr r-cran-digest r-cran-htmltools 269s r-cran-htmlwidgets r-cran-knitr r-cran-mockery r-cran-processx r-cran-ps 269s r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-testthat 269s r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc 269s r-cran-lobstr r-cran-progress r-cran-bit64 r-cran-bit r-cran-curl 269s r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-yaml 269s r-cran-unitizer r-cran-testit r-cran-survival r-cran-dplyr r-cran-hexbin 269s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 269s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 269s r-cran-vdiffr r-cran-xml2 r-cran-dbi r-cran-rsqlite r-cran-waldo 269s r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-abind 269s r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools 269s r-cran-xml r-cran-fs r-cran-usethis r-cran-dichromat r-cran-hms 269s r-cran-stringi r-cran-mockr r-cran-formattable r-cran-generics 269s r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl 269s libx11-protocol-perl x11-utils x11-xserver-utils 269s The following packages will be REMOVED: 269s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 269s The following NEW packages will be installed: 269s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 269s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 269s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 269s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 269s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 269s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 269s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 269s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 269s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 269s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 269s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 269s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 269s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 269s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 269s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 269s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 269s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 269s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 269s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 269s linux-libc-dev littler pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 269s r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel 269s r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata 269s r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools 269s r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops 269s r-cran-catools r-cran-cli r-cran-codetools r-cran-colorspace r-cran-cpp11 269s r-cran-crayon r-cran-data.table r-cran-fansi r-cran-farver r-cran-formatr 269s r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-ggplot2 269s r-cran-glue r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools 269s r-cran-isoband r-cran-kernsmooth r-cran-labeling r-cran-lambda.r 269s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 269s r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar 269s r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer 269s r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-scales r-cran-snow 269s r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 269s r-other-rajewsky-dropbead rpcsvc-proto unzip x11-common xdg-utils zip 269s zlib1g-dev 269s The following packages will be upgraded: 269s curl 270s 1 upgraded, 177 newly installed, 5 to remove and 0 not upgraded. 270s Need to get 227 MB/227 MB of archives. 270s After this operation, 708 MB of additional disk space will be used. 270s Get:1 /tmp/autopkgtest.WRqPva/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 270s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 270s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 270s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 270s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 270s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 270s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 270s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 270s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 270s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 270s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 270s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 270s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 270s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 270s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 270s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 270s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 271s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 271s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 271s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 271s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 271s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 271s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 271s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 271s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 271s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 271s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 271s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 271s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 271s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 271s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 271s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 271s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 271s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 271s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 271s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 272s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 272s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 272s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 272s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 272s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 272s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 272s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 272s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 272s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 272s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 272s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 272s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 272s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 272s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 272s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 272s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 272s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 272s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 272s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 272s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 273s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 273s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 273s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 273s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 273s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 273s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 273s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 273s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 273s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 273s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 273s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 273s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 273s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 273s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 273s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 273s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 273s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 273s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 273s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 273s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 273s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 273s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 273s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 273s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 273s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 273s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 273s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 273s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 273s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 273s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 273s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 273s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 273s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 273s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 273s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 273s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 273s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 273s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 273s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 273s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 273s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 273s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 273s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 273s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 273s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 273s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 274s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 274s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 274s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 274s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 274s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 274s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 275s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 275s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 275s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 275s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 275s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 275s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 275s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 275s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 275s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 275s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 275s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 275s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 275s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 275s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 275s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 275s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 275s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 275s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 275s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 275s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 275s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 275s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 275s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 275s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 275s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 276s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 276s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 276s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 276s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 276s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 276s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 277s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-catools arm64 1.18.2-1 [200 kB] 277s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 277s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 277s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 277s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 277s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 277s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 277s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gdata all 3.0.0-1 [483 kB] 277s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 277s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 277s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 277s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 277s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 277s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 277s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 277s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 277s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 277s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 277s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 277s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 277s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 277s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 277s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 277s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 277s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 277s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 277s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 277s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 277s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 277s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 277s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 277s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 278s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 278s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gplots all 3.1.3.1-1 [589 kB] 278s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 278s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 278s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 278s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 278s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-other-rajewsky-dropbead all 0.3.1+git20180221.d746c6f+ds-3 [252 kB] 279s Preconfiguring packages ... 279s Fetched 227 MB in 8s (27.4 MB/s) 279s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 279s wget depends on libpsl5 (>= 0.16.0). 279s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 279s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 279s 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 279s Removing libpsl5:arm64 (0.21.2-1build1) ... 279s Selecting previously unselected package libpsl5t64:arm64. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 279s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 279s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 279s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 279s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 279s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 279s Selecting previously unselected package libcurl4t64:arm64. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 279s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 279s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 279s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 279s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 279s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 279s 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 279s Removing libpng16-16:arm64 (1.6.43-1) ... 279s Selecting previously unselected package libpng16-16t64:arm64. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 279s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 279s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 279s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 279s parted depends on libreadline8 (>= 6.0). 279s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 279s gpgsm depends on libreadline8 (>= 6.0). 279s gpgconf depends on libreadline8 (>= 6.0). 279s gpg depends on libreadline8 (>= 6.0). 279s gawk depends on libreadline8 (>= 6.0). 279s fdisk depends on libreadline8 (>= 6.0). 279s 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 279s Removing libreadline8:arm64 (8.2-3) ... 279s Selecting previously unselected package libreadline8t64:arm64. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 279s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 279s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 279s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 279s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 279s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 279s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 279s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 279s lsof depends on libtirpc3 (>= 1.0.2). 279s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 279s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 279s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 279s iproute2 depends on libtirpc3 (>= 1.0.2). 279s 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 279s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 279s Selecting previously unselected package libtirpc3t64:arm64. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 279s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 280s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 280s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 280s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 280s Selecting previously unselected package libc-dev-bin. 280s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 280s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 280s Selecting previously unselected package linux-libc-dev:arm64. 280s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 280s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 280s Selecting previously unselected package libcrypt-dev:arm64. 280s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 280s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 280s Selecting previously unselected package libtirpc-dev:arm64. 280s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 280s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 280s Selecting previously unselected package libnsl-dev:arm64. 280s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 280s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 280s Selecting previously unselected package rpcsvc-proto. 280s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 280s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 280s Selecting previously unselected package libc6-dev:arm64. 280s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 280s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 280s Selecting previously unselected package libisl23:arm64. 280s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 280s Unpacking libisl23:arm64 (0.26-3) ... 280s Selecting previously unselected package libmpc3:arm64. 280s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 280s Unpacking libmpc3:arm64 (1.3.1-1) ... 280s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 280s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 280s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 280s Selecting previously unselected package cpp-13. 280s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 280s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 280s Selecting previously unselected package cpp-aarch64-linux-gnu. 280s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 280s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 281s Selecting previously unselected package cpp. 281s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 281s Unpacking cpp (4:13.2.0-7ubuntu1) ... 281s Selecting previously unselected package libcc1-0:arm64. 281s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libgomp1:arm64. 281s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libitm1:arm64. 281s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libatomic1:arm64. 281s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libasan8:arm64. 281s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package liblsan0:arm64. 281s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libtsan2:arm64. 281s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libubsan1:arm64. 281s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libhwasan0:arm64. 281s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 281s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 281s Selecting previously unselected package libgcc-13-dev:arm64. 281s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 281s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 281s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 281s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 281s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 282s Selecting previously unselected package gcc-13. 282s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 282s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 282s Selecting previously unselected package gcc-aarch64-linux-gnu. 282s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 282s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 282s Selecting previously unselected package gcc. 282s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 282s Unpacking gcc (4:13.2.0-7ubuntu1) ... 282s Selecting previously unselected package libstdc++-13-dev:arm64. 282s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 282s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 282s Selecting previously unselected package g++-13-aarch64-linux-gnu. 282s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 282s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 283s Selecting previously unselected package g++-13. 283s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 283s Unpacking g++-13 (13.2.0-17ubuntu2) ... 283s Selecting previously unselected package g++-aarch64-linux-gnu. 283s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 283s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 283s Selecting previously unselected package g++. 283s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 283s Unpacking g++ (4:13.2.0-7ubuntu1) ... 283s Selecting previously unselected package build-essential. 283s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 283s Unpacking build-essential (12.10ubuntu1) ... 283s Selecting previously unselected package dctrl-tools. 283s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 283s Unpacking dctrl-tools (2.24-3build2) ... 283s Selecting previously unselected package fonts-dejavu-mono. 283s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 283s Unpacking fonts-dejavu-mono (2.37-8) ... 283s Selecting previously unselected package fonts-dejavu-core. 283s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 283s Unpacking fonts-dejavu-core (2.37-8) ... 283s Selecting previously unselected package fontconfig-config. 283s Preparing to unpack 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Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 283s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 284s Selecting previously unselected package gfortran-13. 284s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 284s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 284s Selecting previously unselected package gfortran-aarch64-linux-gnu. 284s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 284s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 284s Selecting previously unselected package gfortran. 284s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 284s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 284s Selecting previously unselected package icu-devtools. 284s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ... 284s Unpacking icu-devtools (74.2-1ubuntu1) ... 284s Selecting previously unselected package libblas3:arm64. 284s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ... 284s Unpacking libblas3:arm64 (3.12.0-3) ... 284s Selecting previously unselected package libblas-dev:arm64. 284s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ... 284s Unpacking libblas-dev:arm64 (3.12.0-3) ... 284s Selecting previously unselected package libboost1.83-dev:arm64. 284s Preparing to unpack .../049-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 284s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 286s Selecting previously unselected package libboost-dev:arm64. 286s Preparing to unpack .../050-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 286s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 286s Selecting previously unselected package libbz2-dev:arm64. 286s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 286s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 286s Selecting previously unselected package libpixman-1-0:arm64. 286s Preparing to unpack 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286s Selecting previously unselected package libdeflate0:arm64. 286s Preparing to unpack .../058-libdeflate0_1.19-1_arm64.deb ... 286s Unpacking libdeflate0:arm64 (1.19-1) ... 286s Selecting previously unselected package libgraphite2-3:arm64. 286s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_arm64.deb ... 286s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 286s Selecting previously unselected package libharfbuzz0b:arm64. 286s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_arm64.deb ... 286s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 286s Selecting previously unselected package x11-common. 287s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ... 287s Unpacking x11-common (1:7.7+23ubuntu2) ... 287s Selecting previously unselected package libice6:arm64. 287s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_arm64.deb ... 287s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 287s Selecting previously unselected package libicu-dev:arm64. 287s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_arm64.deb ... 287s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 287s Selecting previously unselected package libjpeg-turbo8:arm64. 287s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 287s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 287s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 287s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 287s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 287s Selecting previously unselected package libjpeg8:arm64. 287s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 287s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 287s Selecting previously unselected package libjpeg8-dev:arm64. 287s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 287s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 287s Selecting previously unselected package libjpeg-dev:arm64. 287s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 287s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 287s Selecting previously unselected package liblapack3:arm64. 287s Preparing to unpack .../069-liblapack3_3.12.0-3_arm64.deb ... 287s Unpacking liblapack3:arm64 (3.12.0-3) ... 287s Selecting previously unselected package liblapack-dev:arm64. 287s Preparing to unpack .../070-liblapack-dev_3.12.0-3_arm64.deb ... 287s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 287s Selecting previously unselected package liblerc4:arm64. 287s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 287s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 287s Selecting previously unselected package libncurses-dev:arm64. 287s Preparing to unpack .../072-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 287s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 287s Selecting previously unselected package libthai-data. 287s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ... 287s Unpacking libthai-data (0.1.29-2) ... 287s Selecting previously unselected package libthai0:arm64. 287s Preparing to unpack .../074-libthai0_0.1.29-2_arm64.deb ... 287s Unpacking libthai0:arm64 (0.1.29-2) ... 287s Selecting previously unselected package libpango-1.0-0:arm64. 287s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 287s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 287s Selecting previously unselected package libpangoft2-1.0-0:arm64. 288s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 288s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 288s Selecting previously unselected package libpangocairo-1.0-0:arm64. 288s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 288s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 288s Selecting previously unselected package libpaper1:arm64. 288s Preparing to unpack .../078-libpaper1_1.1.29_arm64.deb ... 288s Unpacking libpaper1:arm64 (1.1.29) ... 288s Selecting previously unselected package libpaper-utils. 288s Preparing to unpack .../079-libpaper-utils_1.1.29_arm64.deb ... 288s Unpacking libpaper-utils (1.1.29) ... 288s Selecting previously unselected package libpcre2-16-0:arm64. 288s Preparing to unpack .../080-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 288s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 288s Selecting previously unselected package libpcre2-32-0:arm64. 288s Preparing to unpack .../081-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 288s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 288s Selecting previously unselected package libpcre2-posix3:arm64. 288s Preparing to unpack .../082-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 288s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 288s Selecting previously unselected package libpcre2-dev:arm64. 288s Preparing to unpack .../083-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 288s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 288s Selecting previously unselected package libpkgconf3:arm64. 288s Preparing to unpack .../084-libpkgconf3_1.8.1-2_arm64.deb ... 288s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 288s Selecting previously unselected package zlib1g-dev:arm64. 288s Preparing to unpack .../085-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 288s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 288s Selecting previously unselected package libpng-dev:arm64. 288s Preparing to unpack .../086-libpng-dev_1.6.43-3_arm64.deb ... 288s Unpacking libpng-dev:arm64 (1.6.43-3) ... 288s Selecting previously unselected package libreadline-dev:arm64. 288s Preparing to unpack .../087-libreadline-dev_8.2-3.1_arm64.deb ... 288s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 288s Selecting previously unselected package libsharpyuv0:arm64. 288s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_arm64.deb ... 288s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 288s Selecting previously unselected package libsm6:arm64. 288s Preparing to unpack .../089-libsm6_2%3a1.2.3-1build2_arm64.deb ... 288s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 288s Selecting previously unselected package libtcl8.6:arm64. 288s Preparing to unpack .../090-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 288s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 288s Selecting previously unselected package libjbig0:arm64. 288s Preparing to unpack .../091-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 288s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 289s Selecting previously unselected package libwebp7:arm64. 289s Preparing to unpack .../092-libwebp7_1.3.2-0.4_arm64.deb ... 289s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 289s Selecting previously unselected package libtiff6:arm64. 289s Preparing to unpack .../093-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 289s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 289s Selecting previously unselected package libxft2:arm64. 289s Preparing to unpack .../094-libxft2_2.3.6-1_arm64.deb ... 289s Unpacking libxft2:arm64 (2.3.6-1) ... 289s Selecting previously unselected package libxss1:arm64. 289s Preparing to unpack .../095-libxss1_1%3a1.2.3-1build2_arm64.deb ... 289s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 289s Selecting previously unselected package libtk8.6:arm64. 289s Preparing to unpack .../096-libtk8.6_8.6.13-2_arm64.deb ... 289s Unpacking libtk8.6:arm64 (8.6.13-2) ... 289s Selecting previously unselected package libxt6t64:arm64. 289s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 289s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 289s Selecting previously unselected package zip. 289s Preparing to unpack .../098-zip_3.0-13_arm64.deb ... 289s Unpacking zip (3.0-13) ... 289s Selecting previously unselected package unzip. 289s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ... 289s Unpacking unzip (6.0-28ubuntu3) ... 289s Selecting previously unselected package xdg-utils. 289s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 289s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 289s Selecting previously unselected package r-base-core. 289s Preparing to unpack .../101-r-base-core_4.3.3-2build1_arm64.deb ... 289s Unpacking r-base-core (4.3.3-2build1) ... 290s Selecting previously unselected package r-cran-littler. 290s Preparing to unpack .../102-r-cran-littler_0.3.19-1_arm64.deb ... 290s Unpacking r-cran-littler (0.3.19-1) ... 290s Selecting previously unselected package littler. 290s Preparing to unpack .../103-littler_0.3.19-1_all.deb ... 290s Unpacking littler (0.3.19-1) ... 290s Selecting previously unselected package pkgconf-bin. 290s Preparing to unpack .../104-pkgconf-bin_1.8.1-2_arm64.deb ... 290s Unpacking pkgconf-bin (1.8.1-2) ... 290s Selecting previously unselected package pkgconf:arm64. 290s Preparing to unpack .../105-pkgconf_1.8.1-2_arm64.deb ... 290s Unpacking pkgconf:arm64 (1.8.1-2) ... 290s Selecting previously unselected package pkg-config:arm64. 290s Preparing to unpack .../106-pkg-config_1.8.1-2_arm64.deb ... 290s Unpacking pkg-config:arm64 (1.8.1-2) ... 290s Selecting previously unselected package liblzma-dev:arm64. 290s Preparing to unpack .../107-liblzma-dev_5.4.5-0.3_arm64.deb ... 290s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 290s Selecting previously unselected package r-base-dev. 290s Preparing to unpack .../108-r-base-dev_4.3.3-2build1_all.deb ... 290s Unpacking r-base-dev (4.3.3-2build1) ... 290s Selecting previously unselected package pkg-r-autopkgtest. 290s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 290s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 290s Selecting previously unselected package r-bioc-biocgenerics. 290s Preparing to unpack .../110-r-bioc-biocgenerics_0.48.1-2_all.deb ... 290s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 290s Selecting previously unselected package r-cran-formatr. 290s Preparing to unpack .../111-r-cran-formatr_1.14-1_all.deb ... 290s Unpacking r-cran-formatr (1.14-1) ... 290s Selecting previously unselected package r-cran-lambda.r. 290s Preparing to unpack .../112-r-cran-lambda.r_1.2.4-2build1_all.deb ... 290s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 290s Selecting previously unselected package r-cran-futile.options. 290s Preparing to unpack .../113-r-cran-futile.options_1.0.1-3build1_all.deb ... 290s Unpacking r-cran-futile.options (1.0.1-3build1) ... 290s Selecting previously unselected package r-cran-futile.logger. 290s Preparing to unpack .../114-r-cran-futile.logger_1.4.3-4build1_all.deb ... 290s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 290s Selecting previously unselected package r-cran-snow. 290s Preparing to unpack .../115-r-cran-snow_1%3a0.4.4-2_all.deb ... 290s Unpacking r-cran-snow (1:0.4.4-2) ... 290s Selecting previously unselected package r-cran-codetools. 290s Preparing to unpack .../116-r-cran-codetools_0.2-19-1_all.deb ... 290s Unpacking r-cran-codetools (0.2-19-1) ... 290s Selecting previously unselected package r-cran-bh. 290s Preparing to unpack .../117-r-cran-bh_1.84.0-1_all.deb ... 290s Unpacking r-cran-bh (1.84.0-1) ... 290s Selecting previously unselected package r-cran-cpp11. 290s Preparing to unpack .../118-r-cran-cpp11_0.4.7-1_all.deb ... 290s Unpacking r-cran-cpp11 (0.4.7-1) ... 290s Selecting previously unselected package r-bioc-biocparallel. 290s Preparing to unpack .../119-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 290s Unpacking r-bioc-biocparallel (1.36.0-1) ... 291s Selecting previously unselected package r-bioc-s4vectors. 291s Preparing to unpack .../120-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 291s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 291s Selecting previously unselected package r-bioc-iranges. 291s Preparing to unpack .../121-r-bioc-iranges_2.36.0-1_arm64.deb ... 291s Unpacking r-bioc-iranges (2.36.0-1) ... 291s Selecting previously unselected package r-bioc-zlibbioc. 291s Preparing to unpack .../122-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 291s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 291s Selecting previously unselected package r-bioc-xvector. 291s Preparing to unpack .../123-r-bioc-xvector_0.42.0-1_arm64.deb ... 291s Unpacking r-bioc-xvector (0.42.0-1) ... 291s Selecting previously unselected package r-cran-bitops. 291s Preparing to unpack .../124-r-cran-bitops_1.0-7-1_arm64.deb ... 291s Unpacking r-cran-bitops (1.0-7-1) ... 291s Selecting previously unselected package r-cran-rcurl. 291s Preparing to unpack .../125-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 291s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 291s Selecting previously unselected package r-bioc-genomeinfodbdata. 291s Preparing to unpack .../126-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 291s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 291s Selecting previously unselected package r-bioc-genomeinfodb. 291s Preparing to unpack .../127-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 291s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 291s Selecting previously unselected package r-cran-crayon. 291s Preparing to unpack .../128-r-cran-crayon_1.5.2-1_all.deb ... 291s Unpacking r-cran-crayon (1.5.2-1) ... 291s Selecting previously unselected package r-bioc-biostrings. 291s Preparing to unpack .../129-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 291s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 291s Selecting previously unselected package r-bioc-genomicranges. 291s Preparing to unpack .../130-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 291s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 291s Selecting previously unselected package r-bioc-rhtslib. 291s Preparing to unpack .../131-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 291s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 292s Selecting previously unselected package r-bioc-rsamtools. 292s Preparing to unpack .../132-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 292s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 292s Selecting previously unselected package r-cran-catools. 292s Preparing to unpack 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Selecting previously unselected package r-cran-gtools. 292s Preparing to unpack .../139-r-cran-gtools_3.9.5-1_arm64.deb ... 292s Unpacking r-cran-gtools (3.9.5-1) ... 292s Selecting previously unselected package r-cran-gdata. 292s Preparing to unpack .../140-r-cran-gdata_3.0.0-1_all.deb ... 292s Unpacking r-cran-gdata (3.0.0-1) ... 292s Selecting previously unselected package r-cran-glue. 292s Preparing to unpack .../141-r-cran-glue_1.7.0-1_arm64.deb ... 292s Unpacking r-cran-glue (1.7.0-1) ... 292s Selecting previously unselected package r-cran-rlang. 292s Preparing to unpack .../142-r-cran-rlang_1.1.3-1_arm64.deb ... 292s Unpacking r-cran-rlang (1.1.3-1) ... 292s Selecting previously unselected package r-cran-lifecycle. 292s Preparing to unpack .../143-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 292s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 292s Selecting previously unselected package r-cran-gtable. 292s Preparing to unpack .../144-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 292s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 292s Selecting previously unselected package r-cran-isoband. 292s Preparing to unpack .../145-r-cran-isoband_0.2.7-1_arm64.deb ... 292s Unpacking r-cran-isoband (0.2.7-1) ... 292s Selecting previously unselected package r-cran-mass. 292s Preparing to unpack .../146-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 292s Unpacking r-cran-mass (7.3-60.0.1-1) ... 292s Selecting previously unselected package r-cran-lattice. 292s Preparing to unpack .../147-r-cran-lattice_0.22-5-1_arm64.deb ... 292s Unpacking r-cran-lattice (0.22-5-1) ... 292s Selecting previously unselected package r-cran-nlme. 292s Preparing to unpack .../148-r-cran-nlme_3.1.164-1_arm64.deb ... 292s Unpacking r-cran-nlme (3.1.164-1) ... 292s Selecting previously unselected package r-cran-matrix. 293s Preparing to unpack .../149-r-cran-matrix_1.6-5-1_arm64.deb ... 293s Unpacking r-cran-matrix (1.6-5-1) ... 293s Selecting previously unselected package r-cran-mgcv. 293s Preparing to unpack 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293s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 293s Selecting previously unselected package r-cran-tibble. 293s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 293s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 293s Selecting previously unselected package r-cran-withr. 293s Preparing to unpack .../163-r-cran-withr_2.5.0-1_all.deb ... 293s Unpacking r-cran-withr (2.5.0-1) ... 293s Selecting previously unselected package r-cran-ggplot2. 293s Preparing to unpack .../164-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 293s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 293s Selecting previously unselected package r-cran-kernsmooth. 293s Preparing to unpack .../165-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 293s Unpacking r-cran-kernsmooth (2.23-22-1) ... 293s Selecting previously unselected package r-cran-gplots. 293s Preparing to unpack .../166-r-cran-gplots_3.1.3.1-1_all.deb ... 293s Unpacking r-cran-gplots (3.1.3.1-1) ... 293s Selecting previously unselected package 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g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 298s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 298s Setting up r-cran-r6 (2.5.1-1) ... 298s Setting up r-cran-pkgkitten (0.2.3-1) ... 298s Setting up r-cran-magrittr (2.0.3-1) ... 298s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 298s Setting up r-cran-littler (0.3.19-1) ... 298s Setting up r-cran-bh (1.84.0-1) ... 298s Setting up r-cran-rcpp (1.0.12-1) ... 298s Setting up r-cran-codetools (0.2-19-1) ... 298s Setting up r-bioc-biocgenerics (0.48.1-2) ... 298s Setting up r-cran-rlang (1.1.3-1) ... 298s Setting up littler (0.3.19-1) ... 298s Setting up r-cran-withr (2.5.0-1) ... 298s Setting up r-cran-lambda.r (1.2.4-2build1) ... 298s Setting up r-cran-fansi (1.0.5-1) ... 298s Setting up r-cran-mass (7.3-60.0.1-1) ... 298s Setting up r-cran-snow (1:0.4.4-2) ... 298s Setting up r-cran-gtools (3.9.5-1) ... 298s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 298s Setting up r-cran-glue (1.7.0-1) ... 298s Setting up r-cran-cli (3.6.2-1) ... 298s Setting up gfortran (4:13.2.0-7ubuntu1) ... 298s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 298s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 298s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 298s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 298s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 298s Setting up r-cran-bitops (1.0-7-1) ... 298s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 298s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 298s Setting up r-cran-utf8 (1.2.4-1) ... 298s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 298s Setting up r-cran-cpp11 (0.4.7-1) ... 298s Setting up r-cran-plyr (1.8.9-1) ... 298s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 298s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 298s Setting up r-cran-isoband (0.2.7-1) ... 298s Setting up r-cran-futile.logger (1.4.3-4build1) ... 298s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 298s Setting up r-cran-matrix (1.6-5-1) ... 298s Setting up r-cran-kernsmooth (2.23-22-1) ... 298s Setting up r-cran-mgcv (1.9-1-1) ... 298s Setting up g++ (4:13.2.0-7ubuntu1) ... 298s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 298s Setting up build-essential (12.10ubuntu1) ... 298s Setting up r-cran-catools (1.18.2-1) ... 298s Setting up r-bioc-iranges (2.36.0-1) ... 298s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 298s Setting up r-cran-gdata (3.0.0-1) ... 298s Setting up r-cran-vctrs (0.6.5-1) ... 298s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 298s Setting up r-base-dev (4.3.3-2build1) ... 298s Setting up r-bioc-biocparallel (1.36.0-1) ... 298s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 298s Setting up r-cran-munsell (0.5.0-2build1) ... 298s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 298s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 298s Setting up r-cran-gridextra (2.3-3build1) ... 298s Setting up r-cran-scales (1.3.0-1) ... 298s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 298s Setting up r-bioc-xvector (0.42.0-1) ... 298s Setting up r-cran-gplots (3.1.3.1-1) ... 298s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 298s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 298s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 298s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 298s Setting up r-other-rajewsky-dropbead (0.3.1+git20180221.d746c6f+ds-3) ... 298s Setting up autopkgtest-satdep (0) ... 298s Processing triggers for man-db (2.12.0-3) ... 299s Processing triggers for install-info (7.1-3) ... 299s Processing triggers for libc-bin (2.39-0ubuntu2) ... 307s (Reading database ... 103234 files and directories currently installed.) 307s Removing autopkgtest-satdep (0) ... 308s autopkgtest [21:02:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 308s autopkgtest [21:02:59]: test pkg-r-autopkgtest: [----------------------- 308s Test: Try to load the R library dropbead 309s 309s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 309s Copyright (C) 2024 The R Foundation for Statistical Computing 309s Platform: aarch64-unknown-linux-gnu (64-bit) 309s 309s R is free software and comes with ABSOLUTELY NO WARRANTY. 309s You are welcome to redistribute it under certain conditions. 309s Type 'license()' or 'licence()' for distribution details. 309s 309s R is a collaborative project with many contributors. 309s Type 'contributors()' for more information and 309s 'citation()' on how to cite R or R packages in publications. 309s 309s Type 'demo()' for some demos, 'help()' for on-line help, or 309s 'help.start()' for an HTML browser interface to help. 309s Type 'q()' to quit R. 309s 309s > library('dropbead') 309s Loading required package: ggplot2 309s Loading required package: grid 309s Loading required package: RColorBrewer 309s Loading required package: gridExtra 309s Loading required package: gplots 309s 309s Attaching package: ‘gplots’ 309s 309s The following object is masked from ‘package:stats’: 309s 309s lowess 309s 309s Loading required package: plyr 310s > 310s > 310s Other tests are currently unsupported! 310s They will be progressively added. 310s autopkgtest [21:03:01]: test pkg-r-autopkgtest: -----------------------] 311s autopkgtest [21:03:02]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 311s pkg-r-autopkgtest PASS 311s autopkgtest [21:03:02]: @@@@@@@@@@@@@@@@@@@@ summary 311s pkg-r-autopkgtest PASS 315s Creating nova instance adt-noble-arm64-r-other-rajewsky-dropbead-20240316-205751-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...