0s autopkgtest [03:44:16]: starting date and time: 2024-03-24 03:44:16+0000 0s autopkgtest [03:44:16]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:44:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g16po1gk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rnetcdf,src:curl,src:gnutls28,src:hdf5,src:libpsl,src:netcdf,src:nettle,src:openssl,src:orthanc-python --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rnetcdf/2.9-1-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu3 libpsl/0.21.2-1.1 netcdf/1:4.9.2-5ubuntu3 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-30.secgroup --name adt-noble-arm64-r-cran-stars-20240324-034416-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 133s autopkgtest [03:46:29]: testbed dpkg architecture: arm64 133s autopkgtest [03:46:29]: testbed apt version: 2.7.12 133s autopkgtest [03:46:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 134s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 135s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 136s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3982 kB] 137s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 137s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 137s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 137s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 137s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 137s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 138s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 138s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 138s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 148s Fetched 9842 kB in 6s (1735 kB/s) 149s Reading package lists... 156s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade... 160s The following packages will be REMOVED: 160s libssl3 160s The following NEW packages will be installed: 160s libssl3t64 160s The following packages have been kept back: 160s curl 160s The following packages will be upgraded: 160s fonts-ubuntu-console libbsd0 libc-bin libc6 locales openssl 160s 6 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 160s Need to get 10.4 MB of archives. 160s After this operation, 141 kB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu6 [2776 kB] 161s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu6 [591 kB] 161s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 161s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1 [41.0 kB] 161s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 locales all 2.39-0ubuntu6 [4232 kB] 161s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 162s Preconfiguring packages ... 163s Fetched 10.4 MB in 1s (8730 kB/s) 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 163s Preparing to unpack .../libc6_2.39-0ubuntu6_arm64.deb ... 164s Unpacking libc6:arm64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 165s Setting up libc6:arm64 (2.39-0ubuntu6) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 167s Preparing to unpack .../libc-bin_2.39-0ubuntu6_arm64.deb ... 167s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 167s Setting up libc-bin (2.39-0ubuntu6) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 168s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 168s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 168s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 168s wget depends on libssl3 (>= 3.0.0). 168s u-boot-tools depends on libssl3 (>= 3.0.0). 168s tnftp depends on libssl3 (>= 3.0.0). 168s tcpdump depends on libssl3 (>= 3.0.0). 168s systemd-resolved depends on libssl3 (>= 3.0.0). 168s systemd depends on libssl3 (>= 3.0.0). 168s sudo depends on libssl3 (>= 3.0.0). 168s sbsigntool depends on libssl3 (>= 3.0.0). 168s rsync depends on libssl3 (>= 3.0.0). 168s python3-cryptography depends on libssl3 (>= 3.0.0). 168s openssh-server depends on libssl3 (>= 3.0.10). 168s openssh-client depends on libssl3 (>= 3.0.10). 168s mtd-utils depends on libssl3 (>= 3.0.0). 168s mokutil depends on libssl3 (>= 3.0.0). 168s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 168s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 168s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 168s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 168s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 168s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 168s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 168s libnvme1 depends on libssl3 (>= 3.0.0). 168s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 168s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 168s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 168s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 168s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 168s kmod depends on libssl3 (>= 3.0.0). 168s dhcpcd-base depends on libssl3 (>= 3.0.0). 168s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 168s 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 169s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 169s Selecting previously unselected package libssl3t64:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 169s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 169s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 169s Preparing to unpack .../libbsd0_0.12.1-1_arm64.deb ... 169s Unpacking libbsd0:arm64 (0.12.1-1) over (0.11.8-1) ... 169s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 169s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 171s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 171s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 171s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 171s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 171s Setting up locales (2.39-0ubuntu6) ... 173s Generating locales (this might take a while)... 185s en_US.UTF-8... done 185s Generation complete. 185s Setting up openssl (3.0.13-0ubuntu2) ... 185s Setting up libbsd0:arm64 (0.12.1-1) ... 185s Processing triggers for man-db (2.12.0-3) ... 187s Processing triggers for libc-bin (2.39-0ubuntu6) ... 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 190s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 192s sh: Attempting to set up Debian/Ubuntu apt sources automatically 192s sh: Distribution appears to be Ubuntu 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 198s eatmydata is already the newest version (131-1). 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 200s dbus is already the newest version (1.14.10-4ubuntu1). 200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 200s Reading package lists... 201s Building dependency tree... 201s Reading state information... 203s rng-tools-debian is already the newest version (2.4). 203s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 203s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s The following packages will be REMOVED: 205s cloud-init* python3-configobj* python3-debconf* 206s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 206s After this operation, 3256 kB disk space will be freed. 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 207s Removing cloud-init (24.1.2-0ubuntu1) ... 209s Removing python3-configobj (5.0.8-3) ... 209s Removing python3-debconf (1.5.86) ... 209s Processing triggers for man-db (2.12.0-3) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 210s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 213s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 213s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 213s invoke-rc.d: policy-rc.d denied execution of try-restart. 214s Reading package lists... 214s Building dependency tree... 214s Reading state information... 216s linux-generic is already the newest version (6.8.0-11.11+1). 216s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 217s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 217s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 217s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 227s Reading package lists... 227s Reading package lists... 228s Building dependency tree... 228s Reading state information... 229s Calculating upgrade... 231s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 231s Reading package lists... 231s Building dependency tree... 231s Reading state information... 233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 234s autopkgtest [03:48:10]: rebooting testbed after setup commands that affected boot 400s autopkgtest [03:50:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 405s autopkgtest [03:51:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 410s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (dsc) [2749 B] 410s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (tar) [3714 kB] 410s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-stars 0.6-4-1 (diff) [4316 B] 411s gpgv: Signature made Tue Oct 17 13:19:14 2023 UTC 411s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 411s gpgv: issuer "tille@debian.org" 411s gpgv: Can't check signature: No public key 411s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-4-1.dsc: no acceptable signature found 412s autopkgtest [03:51:08]: testing package r-cran-stars version 0.6-4-1 412s autopkgtest [03:51:08]: build not needed 416s autopkgtest [03:51:12]: test run-unit-test: preparing testbed 420s Reading package lists... 420s Building dependency tree... 420s Reading state information... 423s Starting pkgProblemResolver with broken count: 0 423s Starting 2 pkgProblemResolver with broken count: 0 423s Done 423s The following additional packages will be installed: 423s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 423s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 423s gdal-plugins javascript-common libaec0 libarmadillo12 libarpack2 libblas3 423s libblosc1 libcairo2 libcfitsio10 libdatrie1 libdav1d7 libde265-0 libdeflate0 423s libfontconfig1 libfreexl1 libfyba0 libgdal34 libgeos-c1v5 libgeos3.12.1 423s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 423s libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d 423s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 423s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 423s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 423s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 423s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 423s libjs-twitter-bootstrap-datepicker libkmlbase1 libkmldom1 libkmlengine1 423s liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0 libminizip1 423s libmysqlclient21 libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 423s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 423s libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25 libqhull-r8.0 423s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8 libsuperlu6 423s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libudunits2-0 423s libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 423s libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 littler mysql-common 423s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 423s proj-data r-base-core r-cran-abind r-cran-areal r-cran-askpass 423s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 423s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 423s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 423s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 423s r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 423s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 423s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 423s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 423s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 423s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 423s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 423s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 423s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 423s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 423s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 423s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 423s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 423s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 423s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 423s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 423s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 423s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 423s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 423s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 423s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 423s r-cran-scales r-cran-sf r-cran-sftime r-cran-shiny r-cran-sourcetools 423s r-cran-sp r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 423s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 423s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 423s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 423s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 423s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 423s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 423s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 423s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common unzip 423s x11-common xdg-utils zip 423s Suggested packages: 423s apache2 | lighttpd | httpd geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc 423s libhdf4-alt-dev hdf4-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec 423s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 423s libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs 423s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils 423s odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 nodejs 423s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 423s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 423s ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info 423s | r-doc-pdf r-mathlib r-base-html r-cran-png r-cran-spelling r-cran-lpsolve 423s r-cran-quadprog r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 423s r-cran-jpeg r-cran-rstudioapi r-cran-rmysql r-cran-sessioninfo 423s r-cran-reshape2 r-cran-markdown r-cran-magick r-cran-getopt r-cran-mapproj 423s r-cran-tinytest r-cran-bit64 r-cran-formattable r-cran-nanotime 423s r-cran-palmerpenguins r-cran-vdiffr r-cran-roxygen2 r-cran-inline 423s r-cran-hmisc r-cran-rvest r-cran-bench r-cran-blob r-cran-here r-cran-hms 423s Recommended packages: 423s proj-bin libheif-plugin-aomenc libheif-plugin-x265 node-jquery poppler-data 423s r-recommended r-base-dev r-doc-html r-cran-thematic r-cran-cliapp 423s r-cran-mockery r-cran-spdata r-cran-tinytest r-cran-htmlwidgets 423s r-cran-rstudioapi r-cran-whoami r-cran-data.table r-cran-rcpparmadillo 423s r-cran-xml2 r-cran-dt r-cran-bench r-cran-decor r-cran-lobstr 423s r-cran-progress r-cran-spelling r-cran-webutils r-cran-gh r-cran-broom 423s r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-foreign 423s r-cran-ncdf4 r-cran-unitizer r-cran-rsvg r-cran-rhpcblasctl r-cran-r.rsp 423s r-cran-markdown r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp 423s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr 423s r-cran-lintr r-cran-pander r-cran-fields r-cran-testit r-cran-jpeg 423s r-cran-png r-cran-readr r-cran-formatr r-cran-gridsvg r-cran-magick 423s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 423s node-highlight.js r-cran-tidyverse r-cran-r.utils r-cran-geosphere 423s r-cran-runit r-cran-pkgdown r-cran-zip r-cran-sodium r-cran-lubridate 423s r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-aer 423s r-cran-car r-cran-spdep r-cran-statmod r-cran-urca r-cran-bookdown 423s r-cran-webfakes r-cran-cba r-cran-pingr r-cran-igraph r-cran-gbrd 423s r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-bit64 423s r-cran-dichromat r-cran-hms r-cran-blob r-cran-googlevis r-cran-isocodes 423s r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv 423s r-cran-glmnet r-cran-xml r-cran-formattable r-cran-zeallot r-cran-renv 423s r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 423s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 423s x11-xserver-utils 424s The following NEW packages will be installed: 424s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 424s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 424s fonts-mathjax gdal-data gdal-plugins javascript-common libaec0 424s libarmadillo12 libarpack2 libblas3 libblosc1 libcairo2 libcfitsio10 424s libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 libfreexl1 424s libfyba0 libgdal34 libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran5 424s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 424s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 424s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 424s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 424s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 424s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 424s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1 libkmldom1 424s libkmlengine1 liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0 424s libminizip1 libmysqlclient21 libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 424s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 424s libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25 424s libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8 424s libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 424s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 424s libxcb-shm0 libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 littler 424s mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc 424s pandoc-data proj-data r-base-core r-cran-abind r-cran-areal r-cran-askpass 424s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 424s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 424s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 424s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 424s r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 424s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 424s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 424s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 424s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 424s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 424s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 424s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 424s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 424s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 424s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 424s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 424s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 424s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 424s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 424s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 424s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 424s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 424s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 424s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 424s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 424s r-cran-scales r-cran-sf r-cran-sftime r-cran-shiny r-cran-sourcetools 424s r-cran-sp r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 424s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 424s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 424s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 424s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 424s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 424s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 424s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 424s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common unzip 424s x11-common xdg-utils zip 424s 0 upgraded, 288 newly installed, 0 to remove and 0 not upgraded. 424s Need to get 276 MB/276 MB of archives. 424s After this operation, 749 MB of additional disk space will be used. 424s Get:1 /tmp/autopkgtest.GVs4ob/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [944 B] 424s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 424s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 425s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 425s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 425s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 425s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 425s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 425s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 425s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-data all 3.8.4+dfsg-1 [261 kB] 426s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-plugins arm64 3.8.4+dfsg-1 [24.5 kB] 426s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 426s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 426s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 426s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 426s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 426s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 426s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 426s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 426s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 426s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 426s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 426s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 426s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 426s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 426s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 426s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libcfitsio10 arm64 4.3.1-1 [519 kB] 426s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 426s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 426s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 426s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 426s Get:32 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 426s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libminizip1 arm64 1:1.3.dfsg-3ubuntu1 [22.3 kB] 426s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 426s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos3.12.1 arm64 3.12.1-1 [825 kB] 426s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos-c1v5 arm64 3.12.1-1 [88.8 kB] 426s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 427s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 427s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 427s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 427s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 427s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 427s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 427s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 427s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 427s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 427s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 427s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 427s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 427s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 427s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 427s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 427s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 428s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 428s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlbase1 arm64 1.3.0-10 [45.7 kB] 428s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmldom1 arm64 1.3.0-10 [140 kB] 428s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlengine1 arm64 1.3.0-10 [64.9 kB] 428s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 428s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 428s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 428s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 428s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 428s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 428s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 428s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 428s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 428s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 428s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 428s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 428s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 428s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 428s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 428s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libspatialite8 arm64 5.1.0-1 [1938 kB] 428s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces-c3.2 arm64 3.2.4+debian-1.1 [1065 kB] 428s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libgdal34 arm64 3.8.4+dfsg-1 [7887 kB] 429s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 429s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 429s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 429s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 429s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 429s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 429s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 429s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 429s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 429s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 429s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 429s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 429s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 429s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 429s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 429s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 429s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 429s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 429s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 429s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 429s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 429s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 429s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 429s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 429s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 429s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 429s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 429s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 429s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 430s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 430s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 430s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 430s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 430s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 430s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 430s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 431s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 431s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 431s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 434s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 434s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 434s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 434s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 434s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 434s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 434s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 435s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 435s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 435s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 435s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 435s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 435s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 435s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 435s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 435s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 435s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 435s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 435s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 435s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 435s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 435s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 435s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 436s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 436s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 436s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 436s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 436s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 436s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 436s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 436s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 436s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 436s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 436s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 436s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 436s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 436s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 436s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1 [2989 kB] 436s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 436s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 436s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 436s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 436s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bdsmatrix arm64 1.3-6-1 [292 kB] 436s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 436s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 436s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 436s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 436s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 436s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 436s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 436s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 437s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 437s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 437s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 437s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 437s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 437s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 437s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cairo arm64 1.6-2-1 [89.0 kB] 437s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 437s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 437s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 437s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 437s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clue arm64 0.3-65-1 [959 kB] 437s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 437s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-collapse arm64 2.0.10-1 [3033 kB] 437s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 437s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 437s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 437s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 437s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 437s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 437s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 437s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 437s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 437s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 437s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 437s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cubelyr all 1.0.2-1 [347 kB] 437s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 437s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 438s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 438s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 438s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 438s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 438s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-terra arm64 1.7-65-1 [3587 kB] 438s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 438s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-exactextractr arm64 0.10.0-1 [567 kB] 438s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 438s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 438s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 439s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 439s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 439s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 439s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 439s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 439s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 439s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 439s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 439s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 439s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 439s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 440s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 440s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 440s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 440s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 440s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 440s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 440s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tweenr arm64 2.0.2-1 [382 kB] 440s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 440s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 440s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 440s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggforce arm64 0.4.1-1 [1831 kB] 440s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 440s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 440s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggthemes all 5.1.0-1 [434 kB] 440s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 440s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 440s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 440s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 440s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 440s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 440s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spacetime all 1.3-1-1 [2804 kB] 441s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 441s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gstat arm64 2.1-1-2 [2338 kB] 441s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 441s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 441s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 441s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 441s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 441s Get:243 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 441s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 441s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lmtest arm64 0.9.40-1 [396 kB] 441s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lwgeom arm64 0.2-13-3 [382 kB] 441s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 442s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 443s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-misctools all 0.6-28-1 [99.9 kB] 443s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 443s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maxlik all 1.5-2-1 [1550 kB] 443s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rnetcdf arm64 2.9-1-1 [228 kB] 443s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 443s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ncmeta all 0.3.6-1 [360 kB] 443s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 443s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 443s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pcict arm64 0.5-4.4-1 [94.0 kB] 443s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 443s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 443s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 443s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rbibutils arm64 2.2.16-1 [748 kB] 443s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rdpack all 2.6-1 [742 kB] 443s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plm all 2.6-3-1 [2141 kB] 443s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 443s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-randomforest arm64 4.7-1.1-1 [214 kB] 443s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 443s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 443s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 443s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 444s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 444s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 444s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 444s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 444s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 444s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 444s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 444s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 444s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.geom arm64 3.2-8-1 [3805 kB] 445s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.random arm64 3.2-2-1 [1127 kB] 445s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 445s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 445s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 445s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.model arm64 3.2-8-1 [3289 kB] 445s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.linnet arm64 3.1-3-1 [1404 kB] 445s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 445s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 445s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 445s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 448s Preconfiguring packages ... 448s Fetched 276 MB in 22s (12.6 MB/s) 448s Selecting previously unselected package fonts-dejavu-mono. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 448s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 448s Unpacking fonts-dejavu-mono (2.37-8) ... 449s Selecting previously unselected package fonts-dejavu-core. 449s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 449s Unpacking fonts-dejavu-core (2.37-8) ... 449s Selecting previously unselected package fontconfig-config. 449s Preparing to unpack .../002-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 449s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 450s Selecting previously unselected package libfontconfig1:arm64. 450s Preparing to unpack .../003-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 450s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 450s Selecting previously unselected package fontconfig. 450s Preparing to unpack .../004-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 450s Unpacking fontconfig (2.15.0-1ubuntu1) ... 450s Selecting previously unselected package fonts-font-awesome. 450s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 450s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 450s Selecting previously unselected package fonts-glyphicons-halflings. 450s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 450s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 450s Selecting previously unselected package fonts-mathjax. 450s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 450s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 451s Selecting previously unselected package gdal-data. 451s Preparing to unpack .../008-gdal-data_3.8.4+dfsg-1_all.deb ... 451s Unpacking gdal-data (3.8.4+dfsg-1) ... 451s Selecting previously unselected package gdal-plugins:arm64. 451s Preparing to unpack .../009-gdal-plugins_3.8.4+dfsg-1_arm64.deb ... 451s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-1) ... 451s Selecting previously unselected package javascript-common. 451s Preparing to unpack .../010-javascript-common_11+nmu1_all.deb ... 451s Unpacking javascript-common (11+nmu1) ... 451s Selecting previously unselected package libaec0:arm64. 451s Preparing to unpack .../011-libaec0_1.1.2-1_arm64.deb ... 451s Unpacking libaec0:arm64 (1.1.2-1) ... 451s Selecting previously unselected package libblas3:arm64. 451s Preparing to unpack .../012-libblas3_3.12.0-3_arm64.deb ... 451s Unpacking libblas3:arm64 (3.12.0-3) ... 451s Selecting previously unselected package libgfortran5:arm64. 451s Preparing to unpack .../013-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 452s Selecting previously unselected package liblapack3:arm64. 452s Preparing to unpack .../014-liblapack3_3.12.0-3_arm64.deb ... 452s Unpacking liblapack3:arm64 (3.12.0-3) ... 452s Selecting previously unselected package libarpack2:arm64. 452s Preparing to unpack .../015-libarpack2_3.9.1-1_arm64.deb ... 452s Unpacking libarpack2:arm64 (3.9.1-1) ... 452s Selecting previously unselected package libsuperlu6:arm64. 452s Preparing to unpack .../016-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 452s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 452s Selecting previously unselected package libarmadillo12. 452s Preparing to unpack .../017-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 452s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 452s Selecting previously unselected package libsnappy1v5:arm64. 452s Preparing to unpack .../018-libsnappy1v5_1.1.10-1_arm64.deb ... 452s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 452s Selecting previously unselected package libblosc1:arm64. 452s Preparing to unpack .../019-libblosc1_1.21.5+ds-1_arm64.deb ... 452s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 452s Selecting previously unselected package libpixman-1-0:arm64. 452s Preparing to unpack .../020-libpixman-1-0_0.42.2-1_arm64.deb ... 452s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 452s Selecting previously unselected package libxcb-render0:arm64. 452s Preparing to unpack .../021-libxcb-render0_1.15-1_arm64.deb ... 452s Unpacking libxcb-render0:arm64 (1.15-1) ... 453s Selecting previously unselected package libxcb-shm0:arm64. 453s Preparing to unpack .../022-libxcb-shm0_1.15-1_arm64.deb ... 453s Unpacking libxcb-shm0:arm64 (1.15-1) ... 453s Selecting previously unselected package libxrender1:arm64. 453s Preparing to unpack .../023-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 453s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 453s Selecting previously unselected package libcairo2:arm64. 453s Preparing to unpack .../024-libcairo2_1.18.0-1_arm64.deb ... 453s Unpacking libcairo2:arm64 (1.18.0-1) ... 453s Selecting previously unselected package libcfitsio10:arm64. 453s Preparing to unpack .../025-libcfitsio10_4.3.1-1_arm64.deb ... 453s Unpacking libcfitsio10:arm64 (4.3.1-1) ... 453s Selecting previously unselected package libdatrie1:arm64. 453s Preparing to unpack .../026-libdatrie1_0.2.13-3_arm64.deb ... 453s Unpacking libdatrie1:arm64 (0.2.13-3) ... 453s Selecting previously unselected package libdav1d7:arm64. 453s Preparing to unpack .../027-libdav1d7_1.4.0-1_arm64.deb ... 453s Unpacking libdav1d7:arm64 (1.4.0-1) ... 453s Selecting previously unselected package libde265-0:arm64. 453s Preparing to unpack .../028-libde265-0_1.0.15-1_arm64.deb ... 453s Unpacking libde265-0:arm64 (1.0.15-1) ... 453s Selecting previously unselected package libdeflate0:arm64. 453s Preparing to unpack .../029-libdeflate0_1.19-1_arm64.deb ... 453s Unpacking libdeflate0:arm64 (1.19-1) ... 453s Selecting previously unselected package libfyba0:arm64. 453s Preparing to unpack .../030-libfyba0_4.1.1-8_arm64.deb ... 453s Unpacking libfyba0:arm64 (4.1.1-8) ... 453s Selecting previously unselected package libminizip1:arm64. 453s Preparing to unpack .../031-libminizip1_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 453s Unpacking libminizip1:arm64 (1:1.3.dfsg-3ubuntu1) ... 454s Selecting previously unselected package libfreexl1:arm64. 454s Preparing to unpack .../032-libfreexl1_2.0.0-1_arm64.deb ... 454s Unpacking libfreexl1:arm64 (2.0.0-1) ... 454s Selecting previously unselected package libgeos3.12.1:arm64. 454s Preparing to unpack .../033-libgeos3.12.1_3.12.1-1_arm64.deb ... 454s Unpacking libgeos3.12.1:arm64 (3.12.1-1) ... 454s Selecting previously unselected package libgeos-c1v5:arm64. 454s Preparing to unpack .../034-libgeos-c1v5_3.12.1-1_arm64.deb ... 454s Unpacking libgeos-c1v5:arm64 (3.12.1-1) ... 454s Selecting previously unselected package proj-data. 454s Preparing to unpack .../035-proj-data_9.3.1-1_all.deb ... 454s Unpacking proj-data (9.3.1-1) ... 455s Selecting previously unselected package libjbig0:arm64. 455s Preparing to unpack .../036-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 455s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 455s Selecting previously unselected package libjpeg-turbo8:arm64. 455s Preparing to unpack .../037-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 455s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 455s Selecting previously unselected package libjpeg8:arm64. 455s Preparing to unpack .../038-libjpeg8_8c-2ubuntu11_arm64.deb ... 455s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 455s Selecting previously unselected package liblerc4:arm64. 455s Preparing to unpack .../039-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 455s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 455s Selecting previously unselected package libsharpyuv0:arm64. 455s Preparing to unpack .../040-libsharpyuv0_1.3.2-0.4_arm64.deb ... 455s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 455s Selecting previously unselected package libwebp7:arm64. 455s Preparing to unpack .../041-libwebp7_1.3.2-0.4_arm64.deb ... 455s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 455s Selecting previously unselected package libtiff6:arm64. 455s Preparing to unpack .../042-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 455s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 456s Selecting previously unselected package libproj25:arm64. 456s Preparing to unpack .../043-libproj25_9.3.1-1_arm64.deb ... 456s Unpacking libproj25:arm64 (9.3.1-1) ... 456s Selecting previously unselected package libgeotiff5:arm64. 456s Preparing to unpack .../044-libgeotiff5_1.7.1-5_arm64.deb ... 456s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 456s Selecting previously unselected package libgif7:arm64. 456s Preparing to unpack .../045-libgif7_5.2.1-2.5_arm64.deb ... 456s Unpacking libgif7:arm64 (5.2.1-2.5) ... 456s Selecting previously unselected package libhdf4-0-alt. 456s Preparing to unpack .../046-libhdf4-0-alt_4.2.16-3_arm64.deb ... 456s Unpacking libhdf4-0-alt (4.2.16-3) ... 456s Selecting previously unselected package libsz2:arm64. 456s Preparing to unpack .../047-libsz2_1.1.2-1_arm64.deb ... 456s Unpacking libsz2:arm64 (1.1.2-1) ... 456s Selecting previously unselected package libhdf5-103-1:arm64. 456s Preparing to unpack .../048-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 456s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 456s Selecting previously unselected package libheif-plugin-dav1d:arm64. 456s Preparing to unpack .../049-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 456s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 456s Selecting previously unselected package libheif-plugin-libde265:arm64. 457s Preparing to unpack .../050-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 457s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 457s Selecting previously unselected package libheif1:arm64. 457s Preparing to unpack .../051-libheif1_1.17.6-1ubuntu1_arm64.deb ... 457s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 457s Selecting previously unselected package liburiparser1:arm64. 457s Preparing to unpack .../052-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 457s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 457s Selecting previously unselected package libkmlbase1:arm64. 457s Preparing to unpack .../053-libkmlbase1_1.3.0-10_arm64.deb ... 457s Unpacking libkmlbase1:arm64 (1.3.0-10) ... 457s Selecting previously unselected package libkmldom1:arm64. 457s Preparing to unpack .../054-libkmldom1_1.3.0-10_arm64.deb ... 457s Unpacking libkmldom1:arm64 (1.3.0-10) ... 457s Selecting previously unselected package libkmlengine1:arm64. 457s Preparing to unpack .../055-libkmlengine1_1.3.0-10_arm64.deb ... 457s Unpacking libkmlengine1:arm64 (1.3.0-10) ... 457s Selecting previously unselected package mysql-common. 457s Preparing to unpack .../056-mysql-common_5.8+1.1.0_all.deb ... 457s Unpacking mysql-common (5.8+1.1.0) ... 457s Selecting previously unselected package libmysqlclient21:arm64. 457s Preparing to unpack .../057-libmysqlclient21_8.0.36-1_arm64.deb ... 457s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 458s Selecting previously unselected package libhdf5-hl-100:arm64. 458s Preparing to unpack .../058-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 458s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 458s Selecting previously unselected package libnetcdf19:arm64. 458s Preparing to unpack .../059-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 458s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 458s Selecting previously unselected package libltdl7:arm64. 458s Preparing to unpack .../060-libltdl7_2.4.7-7_arm64.deb ... 458s Unpacking libltdl7:arm64 (2.4.7-7) ... 458s Selecting previously unselected package libodbc2:arm64. 458s Preparing to unpack .../061-libodbc2_2.3.12-1_arm64.deb ... 458s Unpacking libodbc2:arm64 (2.3.12-1) ... 458s Selecting previously unselected package unixodbc-common. 458s Preparing to unpack .../062-unixodbc-common_2.3.12-1_all.deb ... 458s Unpacking unixodbc-common (2.3.12-1) ... 458s Selecting previously unselected package libodbcinst2:arm64. 458s Preparing to unpack .../063-libodbcinst2_2.3.12-1_arm64.deb ... 458s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 458s Selecting previously unselected package libogdi4.1. 458s Preparing to unpack .../064-libogdi4.1_4.1.1+ds-1_arm64.deb ... 458s Unpacking libogdi4.1 (4.1.1+ds-1) ... 458s Selecting previously unselected package libopenjp2-7:arm64. 458s Preparing to unpack .../065-libopenjp2-7_2.5.0-2_arm64.deb ... 458s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 458s Selecting previously unselected package liblcms2-2:arm64. 458s Preparing to unpack .../066-liblcms2-2_2.14-2_arm64.deb ... 458s Unpacking liblcms2-2:arm64 (2.14-2) ... 458s Selecting previously unselected package libpoppler134:arm64. 458s Preparing to unpack .../067-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 458s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 459s Selecting previously unselected package libpq5:arm64. 459s Preparing to unpack .../068-libpq5_16.2-1_arm64.deb ... 459s Unpacking libpq5:arm64 (16.2-1) ... 459s Selecting previously unselected package libqhull-r8.0:arm64. 459s Preparing to unpack .../069-libqhull-r8.0_2020.2-6_arm64.deb ... 459s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 459s Selecting previously unselected package librttopo1:arm64. 459s Preparing to unpack .../070-librttopo1_1.1.0-3_arm64.deb ... 459s Unpacking librttopo1:arm64 (1.1.0-3) ... 459s Selecting previously unselected package libspatialite8:arm64. 459s Preparing to unpack .../071-libspatialite8_5.1.0-1_arm64.deb ... 459s Unpacking libspatialite8:arm64 (5.1.0-1) ... 459s Selecting previously unselected package libxerces-c3.2:arm64. 459s Preparing to unpack .../072-libxerces-c3.2_3.2.4+debian-1.1_arm64.deb ... 459s Unpacking libxerces-c3.2:arm64 (3.2.4+debian-1.1) ... 460s Selecting previously unselected package libgdal34:arm64. 460s Preparing to unpack .../073-libgdal34_3.8.4+dfsg-1_arm64.deb ... 460s Unpacking libgdal34:arm64 (3.8.4+dfsg-1) ... 460s Selecting previously unselected package libgomp1:arm64. 461s Preparing to unpack .../074-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 461s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 461s Selecting previously unselected package libgraphite2-3:arm64. 461s Preparing to unpack .../075-libgraphite2-3_1.3.14-2_arm64.deb ... 461s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 461s Selecting previously unselected package libharfbuzz0b:arm64. 461s Preparing to unpack .../076-libharfbuzz0b_8.3.0-2_arm64.deb ... 461s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 461s Selecting previously unselected package x11-common. 461s Preparing to unpack .../077-x11-common_1%3a7.7+23ubuntu2_all.deb ... 461s Unpacking x11-common (1:7.7+23ubuntu2) ... 461s Selecting previously unselected package libice6:arm64. 461s Preparing to unpack .../078-libice6_2%3a1.0.10-1build2_arm64.deb ... 461s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 461s Selecting previously unselected package libjs-bootstrap. 461s Preparing to unpack .../079-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 461s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 461s Selecting previously unselected package libjs-popper.js. 461s Preparing to unpack .../080-libjs-popper.js_1.16.1+ds-6_all.deb ... 461s Unpacking libjs-popper.js (1.16.1+ds-6) ... 461s Selecting previously unselected package libjs-bootstrap4. 461s Preparing to unpack .../081-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 461s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 462s Selecting previously unselected package libjs-d3. 462s Preparing to unpack .../082-libjs-d3_3.5.17-4_all.deb ... 462s Unpacking libjs-d3 (3.5.17-4) ... 462s Selecting previously unselected package libjs-es5-shim. 462s Preparing to unpack .../083-libjs-es5-shim_4.6.7-2_all.deb ... 462s Unpacking libjs-es5-shim (4.6.7-2) ... 462s Selecting previously unselected package libjs-highlight.js. 462s Preparing to unpack .../084-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 462s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 462s Selecting previously unselected package libjs-jquery. 462s Preparing to unpack .../085-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 462s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 462s Selecting previously unselected package libjs-jquery-datatables. 462s Preparing to unpack .../086-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 462s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 462s Selecting previously unselected package libjs-sifter.js. 462s Preparing to unpack .../087-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 462s Unpacking libjs-sifter.js (0.6.0+dfsg-3) 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463s Selecting previously unselected package liblua5.4-0:arm64. 463s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_arm64.deb ... 463s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 464s Selecting previously unselected package libthai-data. 464s Preparing to unpack .../094-libthai-data_0.1.29-2_all.deb ... 464s Unpacking libthai-data (0.1.29-2) ... 464s Selecting previously unselected package libthai0:arm64. 464s Preparing to unpack .../095-libthai0_0.1.29-2_arm64.deb ... 464s Unpacking libthai0:arm64 (0.1.29-2) ... 464s Selecting previously unselected package libpango-1.0-0:arm64. 464s Preparing to unpack .../096-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 464s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 464s Selecting previously unselected package libpangoft2-1.0-0:arm64. 464s Preparing to unpack .../097-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 464s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 464s Selecting previously unselected package libpangocairo-1.0-0:arm64. 464s Preparing to unpack .../098-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 464s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 464s Selecting previously unselected package libpaper1:arm64. 464s Preparing to unpack .../099-libpaper1_1.1.29_arm64.deb ... 464s Unpacking libpaper1:arm64 (1.1.29) ... 464s Selecting previously unselected package libpaper-utils. 464s Preparing to unpack .../100-libpaper-utils_1.1.29_arm64.deb ... 464s Unpacking libpaper-utils (1.1.29) ... 464s Selecting previously unselected package libsm6:arm64. 464s Preparing to unpack .../101-libsm6_2%3a1.2.3-1build2_arm64.deb ... 464s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 464s Selecting previously unselected package libtcl8.6:arm64. 464s Preparing to unpack .../102-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 464s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 465s Selecting previously unselected package libxft2:arm64. 465s Preparing to unpack .../103-libxft2_2.3.6-1_arm64.deb ... 465s Unpacking libxft2:arm64 (2.3.6-1) ... 465s Selecting previously unselected package libxss1:arm64. 465s Preparing to unpack .../104-libxss1_1%3a1.2.3-1build2_arm64.deb ... 465s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 465s Selecting previously unselected package libtk8.6:arm64. 465s Preparing to unpack .../105-libtk8.6_8.6.14-1_arm64.deb ... 465s Unpacking libtk8.6:arm64 (8.6.14-1) ... 465s Selecting previously unselected package libudunits2-data. 465s Preparing to unpack .../106-libudunits2-data_2.2.28-7_all.deb ... 465s Unpacking libudunits2-data (2.2.28-7) ... 465s Selecting previously unselected package libudunits2-0. 465s Preparing to unpack .../107-libudunits2-0_2.2.28-7_arm64.deb ... 465s Unpacking libudunits2-0 (2.2.28-7) ... 465s Selecting previously unselected package libxt6:arm64. 465s Preparing to unpack .../108-libxt6_1%3a1.2.1-1.1_arm64.deb ... 465s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 465s Selecting previously unselected package zip. 466s Preparing to unpack .../109-zip_3.0-13_arm64.deb ... 466s Unpacking zip (3.0-13) ... 466s Selecting previously unselected package unzip. 466s Preparing to unpack .../110-unzip_6.0-28ubuntu3_arm64.deb ... 466s Unpacking unzip (6.0-28ubuntu3) ... 466s Selecting previously unselected package xdg-utils. 466s Preparing to unpack .../111-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 466s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 466s Selecting previously unselected package r-base-core. 466s Preparing to unpack .../112-r-base-core_4.3.2-1build1_arm64.deb ... 466s Unpacking r-base-core (4.3.2-1build1) ... 468s Selecting previously unselected package r-cran-littler. 468s Preparing to unpack .../113-r-cran-littler_0.3.19-1_arm64.deb ... 468s Unpacking r-cran-littler (0.3.19-1) ... 468s Selecting previously unselected package littler. 468s Preparing to unpack .../114-littler_0.3.19-1_all.deb ... 468s Unpacking littler (0.3.19-1) ... 468s Selecting previously unselected package node-bootstrap-sass. 468s Preparing to unpack .../115-node-bootstrap-sass_3.4.3-2_all.deb ... 468s Unpacking node-bootstrap-sass (3.4.3-2) ... 469s Selecting previously unselected package node-html5shiv. 469s Preparing to unpack .../116-node-html5shiv_3.7.3+dfsg-5_all.deb ... 469s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 469s Selecting previously unselected package node-normalize.css. 469s Preparing to unpack .../117-node-normalize.css_8.0.1-5_all.deb ... 469s Unpacking node-normalize.css (8.0.1-5) ... 469s Selecting previously unselected package pandoc-data. 469s Preparing to unpack .../118-pandoc-data_3.1.3-1_all.deb ... 469s Unpacking pandoc-data (3.1.3-1) ... 469s Selecting previously unselected package pandoc. 469s Preparing to unpack .../119-pandoc_3.1.3+ds-2_arm64.deb ... 469s Unpacking pandoc (3.1.3+ds-2) ... 475s Selecting previously unselected package r-cran-abind. 475s Preparing to unpack .../120-r-cran-abind_1.4-5-2_all.deb ... 475s Unpacking r-cran-abind (1.4-5-2) ... 475s Selecting previously unselected package r-cran-cli. 475s Preparing to unpack .../121-r-cran-cli_3.6.2-1_arm64.deb ... 475s Unpacking r-cran-cli (3.6.2-1) ... 476s Selecting previously unselected package r-cran-generics. 476s Preparing to unpack .../122-r-cran-generics_0.1.3-1_all.deb ... 476s Unpacking r-cran-generics (0.1.3-1) ... 476s Selecting previously unselected package r-cran-glue. 476s Preparing to unpack .../123-r-cran-glue_1.7.0-1_arm64.deb ... 476s Unpacking r-cran-glue (1.7.0-1) ... 476s Selecting previously unselected package r-cran-rlang. 476s Preparing to unpack .../124-r-cran-rlang_1.1.3-1_arm64.deb ... 476s Unpacking r-cran-rlang (1.1.3-1) ... 476s Selecting previously unselected package r-cran-lifecycle. 476s Preparing to unpack .../125-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 476s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 476s Selecting previously unselected package r-cran-magrittr. 476s Preparing to unpack .../126-r-cran-magrittr_2.0.3-1_arm64.deb ... 476s Unpacking r-cran-magrittr (2.0.3-1) ... 476s Selecting previously unselected package r-cran-fansi. 476s Preparing to unpack .../127-r-cran-fansi_1.0.5-1_arm64.deb ... 476s Unpacking r-cran-fansi (1.0.5-1) ... 477s Selecting previously unselected package r-cran-utf8. 477s Preparing to unpack .../128-r-cran-utf8_1.2.4-1_arm64.deb ... 477s Unpacking r-cran-utf8 (1.2.4-1) ... 477s Selecting previously unselected package r-cran-vctrs. 477s Preparing to unpack .../129-r-cran-vctrs_0.6.5-1_arm64.deb ... 477s Unpacking r-cran-vctrs (0.6.5-1) ... 477s Selecting previously unselected package r-cran-pillar. 477s Preparing to unpack .../130-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 477s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 477s Selecting previously unselected package r-cran-r6. 477s Preparing to unpack .../131-r-cran-r6_2.5.1-1_all.deb ... 477s Unpacking r-cran-r6 (2.5.1-1) ... 477s Selecting previously unselected package r-cran-pkgconfig. 477s Preparing to unpack .../132-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 477s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 477s Selecting previously unselected package r-cran-tibble. 477s Preparing to unpack .../133-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 477s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 478s Selecting previously unselected package r-cran-withr. 478s Preparing to unpack .../134-r-cran-withr_2.5.0-1_all.deb ... 478s Unpacking r-cran-withr (2.5.0-1) ... 478s Selecting previously unselected package r-cran-tidyselect. 478s Preparing to unpack .../135-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 478s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 478s Selecting previously unselected package r-cran-dplyr. 478s Preparing to unpack .../136-r-cran-dplyr_1.1.4-1_arm64.deb ... 478s Unpacking r-cran-dplyr (1.1.4-1) ... 478s Selecting previously unselected package r-cran-purrr. 478s Preparing to unpack .../137-r-cran-purrr_1.0.2-1_arm64.deb ... 478s Unpacking r-cran-purrr (1.0.2-1) ... 479s Selecting previously unselected package r-cran-mass. 479s Preparing to unpack .../138-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 479s Unpacking r-cran-mass (7.3-60.0.1-1) ... 479s Selecting previously unselected package r-cran-class. 479s Preparing to unpack .../139-r-cran-class_7.3-22-2_arm64.deb ... 479s Unpacking r-cran-class (7.3-22-2) ... 479s Selecting previously unselected package r-cran-proxy. 479s Preparing to unpack .../140-r-cran-proxy_0.4-27-1_arm64.deb ... 479s Unpacking r-cran-proxy (0.4-27-1) ... 479s Selecting previously unselected package r-cran-e1071. 479s Preparing to unpack .../141-r-cran-e1071_1.7-14-1_arm64.deb ... 479s Unpacking r-cran-e1071 (1.7-14-1) ... 479s Selecting previously unselected package r-cran-kernsmooth. 479s Preparing to unpack .../142-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 479s Unpacking r-cran-kernsmooth (2.23-22-1) ... 479s Selecting previously unselected package r-cran-classint. 479s Preparing to unpack .../143-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 479s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 479s Selecting previously unselected package r-cran-dbi. 479s Preparing to unpack .../144-r-cran-dbi_1.2.2-1_all.deb ... 479s Unpacking r-cran-dbi (1.2.2-1) ... 480s Selecting previously unselected package r-cran-pkgkitten. 480s Preparing to unpack .../145-r-cran-pkgkitten_0.2.3-1_all.deb ... 480s Unpacking r-cran-pkgkitten (0.2.3-1) ... 480s Selecting previously unselected package r-cran-rcpp. 480s Preparing to unpack .../146-r-cran-rcpp_1.0.12-1_arm64.deb ... 480s Unpacking r-cran-rcpp (1.0.12-1) ... 480s Selecting previously unselected package r-cran-wk. 480s Preparing to unpack .../147-r-cran-wk_0.9.1-1_arm64.deb ... 480s Unpacking r-cran-wk (0.9.1-1) ... 481s Selecting previously unselected package r-cran-s2. 481s Preparing to unpack .../148-r-cran-s2_1.1.6-1_arm64.deb ... 481s Unpacking r-cran-s2 (1.1.6-1) ... 481s Selecting previously unselected package r-cran-units. 481s Preparing to unpack .../149-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 481s Unpacking r-cran-units (0.8-5+dfsg-1) ... 481s Selecting previously unselected package r-cran-sf. 481s Preparing to unpack .../150-r-cran-sf_1.0-15+dfsg-1_arm64.deb ... 481s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 481s Selecting previously unselected package r-cran-areal. 481s Preparing to unpack .../151-r-cran-areal_0.1.8+dfsg-2_all.deb ... 481s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 482s Selecting previously unselected package r-cran-sys. 482s Preparing to unpack .../152-r-cran-sys_3.4.2-1_arm64.deb ... 482s Unpacking r-cran-sys (3.4.2-1) ... 482s Selecting previously unselected package r-cran-askpass. 482s Preparing to unpack .../153-r-cran-askpass_1.2.0-1_arm64.deb ... 482s Unpacking r-cran-askpass (1.2.0-1) ... 482s Selecting previously unselected package r-cran-base64enc. 482s Preparing to unpack .../154-r-cran-base64enc_0.1-3-3_arm64.deb ... 482s Unpacking r-cran-base64enc (0.1-3-3) ... 482s Selecting previously unselected package r-cran-bdsmatrix. 482s Preparing to unpack .../155-r-cran-bdsmatrix_1.3-6-1_arm64.deb ... 482s Unpacking r-cran-bdsmatrix (1.3-6-1) ... 482s Selecting previously unselected package r-cran-brio. 482s Preparing to unpack .../156-r-cran-brio_1.1.4-1_arm64.deb ... 482s Unpacking r-cran-brio (1.1.4-1) ... 482s Selecting previously unselected package r-cran-fastmap. 482s Preparing to unpack .../157-r-cran-fastmap_1.1.1-1_arm64.deb ... 482s Unpacking r-cran-fastmap (1.1.1-1) ... 482s Selecting previously unselected package r-cran-cachem. 482s Preparing to unpack .../158-r-cran-cachem_1.0.8-1_arm64.deb ... 482s Unpacking r-cran-cachem (1.0.8-1) ... 483s Selecting previously unselected package r-cran-digest. 483s Preparing to unpack .../159-r-cran-digest_0.6.34-1_arm64.deb ... 483s Unpacking r-cran-digest (0.6.34-1) ... 483s Selecting previously unselected package r-cran-ellipsis. 483s Preparing to unpack .../160-r-cran-ellipsis_0.3.2-2_arm64.deb ... 483s Unpacking r-cran-ellipsis (0.3.2-2) ... 483s Selecting previously unselected package r-cran-htmltools. 483s Preparing to unpack .../161-r-cran-htmltools_0.5.7-1_arm64.deb ... 483s Unpacking r-cran-htmltools (0.5.7-1) ... 483s Selecting previously unselected package r-cran-jquerylib. 483s Preparing to unpack .../162-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 483s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 483s Selecting previously unselected package r-cran-jsonlite. 483s Preparing to unpack .../163-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 483s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 483s Selecting previously unselected package r-cran-memoise. 483s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 483s Unpacking r-cran-memoise (2.0.1-1) ... 483s Selecting previously unselected package r-cran-mime. 483s Preparing to unpack .../165-r-cran-mime_0.12-1_arm64.deb ... 483s Unpacking r-cran-mime (0.12-1) ... 483s Selecting previously unselected package r-cran-fs. 483s Preparing to unpack .../166-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 483s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 484s Selecting previously unselected package r-cran-rappdirs. 484s Preparing to unpack .../167-r-cran-rappdirs_0.3.3-1_arm64.deb ... 484s Unpacking r-cran-rappdirs (0.3.3-1) ... 484s Selecting previously unselected package r-cran-sass. 484s Preparing to unpack .../168-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 484s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 484s Selecting previously unselected package r-cran-bslib. 484s Preparing to unpack .../169-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 484s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 485s Selecting previously unselected package r-cran-cairo. 485s Preparing to unpack .../170-r-cran-cairo_1.6-2-1_arm64.deb ... 485s Unpacking r-cran-cairo (1.6-2-1) ... 485s Selecting previously unselected package r-cran-ps. 485s Preparing to unpack .../171-r-cran-ps_1.7.6-1_arm64.deb ... 485s Unpacking r-cran-ps (1.7.6-1) ... 485s Selecting previously unselected package r-cran-processx. 485s Preparing to unpack .../172-r-cran-processx_3.8.3-1_arm64.deb ... 485s Unpacking r-cran-processx (3.8.3-1) ... 485s Selecting previously unselected package r-cran-callr. 485s Preparing to unpack .../173-r-cran-callr_3.7.3-2_all.deb ... 485s Unpacking r-cran-callr (3.7.3-2) ... 485s Selecting previously unselected package r-cran-cluster. 485s Preparing to unpack .../174-r-cran-cluster_2.1.6-1_arm64.deb ... 485s Unpacking r-cran-cluster (2.1.6-1) ... 485s Selecting previously unselected package r-cran-clue. 485s Preparing to unpack .../175-r-cran-clue_0.3-65-1_arm64.deb ... 485s Unpacking r-cran-clue (0.3-65-1) ... 485s Selecting previously unselected package r-cran-codetools. 486s Preparing to unpack .../176-r-cran-codetools_0.2-19-1_all.deb ... 486s Unpacking r-cran-codetools (0.2-19-1) ... 486s Selecting previously unselected package r-cran-collapse. 486s Preparing to unpack .../177-r-cran-collapse_2.0.10-1_arm64.deb ... 486s Unpacking r-cran-collapse (2.0.10-1) ... 486s Selecting previously unselected package r-cran-colorspace. 486s Preparing to unpack .../178-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 486s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 486s Selecting previously unselected package r-cran-commonmark. 486s Preparing to unpack .../179-r-cran-commonmark_1.9.1-1_arm64.deb ... 486s Unpacking r-cran-commonmark (1.9.1-1) ... 487s Selecting previously unselected package r-cran-lazyeval. 487s Preparing to unpack .../180-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 487s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 487s Selecting previously unselected package r-cran-rex. 487s Preparing to unpack .../181-r-cran-rex_1.2.1-1_all.deb ... 487s Unpacking r-cran-rex (1.2.1-1) ... 487s Selecting previously unselected package r-cran-curl. 487s Preparing to unpack .../182-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 487s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 487s Selecting previously unselected package r-cran-openssl. 487s Preparing to unpack .../183-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 487s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 487s Selecting previously unselected package r-cran-httr. 487s Preparing to unpack .../184-r-cran-httr_1.4.7+dfsg-1_all.deb ... 487s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 487s Selecting previously unselected package r-cran-crayon. 487s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 487s Unpacking r-cran-crayon (1.5.2-1) ... 487s Selecting previously unselected package r-cran-yaml. 487s Preparing to unpack .../186-r-cran-yaml_2.3.8-1_arm64.deb ... 487s Unpacking r-cran-yaml (2.3.8-1) ... 488s Selecting previously unselected package r-cran-covr. 488s Preparing to unpack .../187-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 488s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 488s Selecting previously unselected package r-cran-cpp11. 488s Preparing to unpack .../188-r-cran-cpp11_0.4.7-1_all.deb ... 488s Unpacking r-cran-cpp11 (0.4.7-1) ... 488s Selecting previously unselected package r-cran-cubelyr. 488s Preparing to unpack .../189-r-cran-cubelyr_1.0.2-1_all.deb ... 488s Unpacking r-cran-cubelyr (1.0.2-1) ... 488s Selecting previously unselected package r-cran-deldir. 488s Preparing to unpack .../190-r-cran-deldir_2.0-4-1_arm64.deb ... 488s Unpacking r-cran-deldir (2.0-4-1) ... 488s Selecting previously unselected package r-cran-desc. 488s Preparing to unpack .../191-r-cran-desc_1.4.3-1_all.deb ... 488s Unpacking r-cran-desc (1.4.3-1) ... 488s Selecting previously unselected package r-cran-diffobj. 488s Preparing to unpack .../192-r-cran-diffobj_0.3.5-1_arm64.deb ... 488s Unpacking r-cran-diffobj (0.3.5-1) ... 489s Selecting previously unselected package r-cran-evaluate. 489s Preparing to unpack .../193-r-cran-evaluate_0.23-1_all.deb ... 489s Unpacking r-cran-evaluate (0.23-1) ... 489s Selecting previously unselected package r-cran-lattice. 489s Preparing to unpack .../194-r-cran-lattice_0.22-5-1_arm64.deb ... 489s Unpacking r-cran-lattice (0.22-5-1) ... 489s Selecting previously unselected package r-cran-sp. 489s Preparing to unpack .../195-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 489s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 489s Selecting previously unselected package r-cran-terra. 489s Preparing to unpack .../196-r-cran-terra_1.7-65-1_arm64.deb ... 489s Unpacking r-cran-terra (1.7-65-1) ... 489s Selecting previously unselected package r-cran-raster. 489s Preparing to unpack .../197-r-cran-raster_3.6-26-1_arm64.deb ... 489s Unpacking r-cran-raster (3.6-26-1) ... 490s Selecting previously unselected package r-cran-exactextractr. 490s Preparing to unpack .../198-r-cran-exactextractr_0.10.0-1_arm64.deb ... 490s Unpacking r-cran-exactextractr (0.10.0-1) ... 490s Selecting previously unselected package r-cran-farver. 490s Preparing to unpack .../199-r-cran-farver_2.1.1-1_arm64.deb ... 490s Unpacking r-cran-farver (2.1.1-1) ... 490s Selecting previously unselected package r-cran-fnn. 490s Preparing to unpack .../200-r-cran-fnn_1.1.4-1_arm64.deb ... 490s Unpacking r-cran-fnn (1.1.4-1) ... 490s Selecting previously unselected package r-cran-fontawesome. 490s Preparing to unpack .../201-r-cran-fontawesome_0.5.2-1_all.deb ... 490s Unpacking r-cran-fontawesome (0.5.2-1) ... 490s Selecting previously unselected package r-cran-formula. 490s Preparing to unpack .../202-r-cran-formula_1.2-5-1_all.deb ... 490s Unpacking r-cran-formula (1.2-5-1) ... 490s Selecting previously unselected package r-cran-globals. 490s Preparing to unpack .../203-r-cran-globals_0.16.2-1_all.deb ... 490s Unpacking r-cran-globals (0.16.2-1) ... 491s Selecting previously unselected package r-cran-listenv. 491s Preparing to unpack .../204-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 491s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 491s Selecting previously unselected package r-cran-parallelly. 491s Preparing to unpack .../205-r-cran-parallelly_1.37.1-1_arm64.deb ... 491s Unpacking r-cran-parallelly (1.37.1-1) ... 491s Selecting previously unselected package r-cran-future. 491s Preparing to unpack .../206-r-cran-future_1.33.1+dfsg-1_all.deb ... 491s Unpacking r-cran-future (1.33.1+dfsg-1) ... 491s Selecting previously unselected package r-cran-future.apply. 491s Preparing to unpack .../207-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 491s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 491s Selecting previously unselected package r-cran-gtable. 491s Preparing to unpack .../208-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 491s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 491s Selecting previously unselected package r-cran-isoband. 491s Preparing to unpack .../209-r-cran-isoband_0.2.7-1_arm64.deb ... 491s Unpacking r-cran-isoband (0.2.7-1) ... 492s Selecting previously unselected package r-cran-nlme. 492s Preparing to unpack .../210-r-cran-nlme_3.1.164-1_arm64.deb ... 492s Unpacking r-cran-nlme (3.1.164-1) ... 492s Selecting previously unselected package r-cran-matrix. 492s Preparing to unpack .../211-r-cran-matrix_1.6-5-1_arm64.deb ... 492s Unpacking r-cran-matrix (1.6-5-1) ... 492s Selecting previously unselected package r-cran-mgcv. 492s Preparing to unpack .../212-r-cran-mgcv_1.9-1-1_arm64.deb ... 492s Unpacking r-cran-mgcv (1.9-1-1) ... 492s Selecting previously unselected package r-cran-labeling. 492s Preparing to unpack .../213-r-cran-labeling_0.4.3-1_all.deb ... 492s Unpacking r-cran-labeling (0.4.3-1) ... 492s Selecting previously unselected package r-cran-munsell. 492s Preparing to unpack .../214-r-cran-munsell_0.5.0-2build1_all.deb ... 492s Unpacking r-cran-munsell (0.5.0-2build1) ... 492s Selecting previously unselected package r-cran-rcolorbrewer. 493s Preparing to unpack .../215-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 493s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 493s Selecting previously unselected package r-cran-viridislite. 493s Preparing to unpack .../216-r-cran-viridislite_0.4.2-2_all.deb ... 493s Unpacking r-cran-viridislite (0.4.2-2) ... 493s Selecting previously unselected package r-cran-scales. 493s Preparing to unpack .../217-r-cran-scales_1.3.0-1_all.deb ... 493s Unpacking r-cran-scales (1.3.0-1) ... 493s Selecting previously unselected package r-cran-ggplot2. 493s Preparing to unpack .../218-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 493s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 493s Selecting previously unselected package r-cran-tweenr. 494s Preparing to unpack .../219-r-cran-tweenr_2.0.2-1_arm64.deb ... 494s Unpacking r-cran-tweenr (2.0.2-1) ... 494s Selecting previously unselected package r-cran-polyclip. 494s Preparing to unpack .../220-r-cran-polyclip_1.10-6-1_arm64.deb ... 494s Unpacking r-cran-polyclip (1.10-6-1) ... 494s Selecting previously unselected package r-cran-systemfonts. 494s Preparing to unpack .../221-r-cran-systemfonts_1.0.5-1_arm64.deb ... 494s Unpacking r-cran-systemfonts (1.0.5-1) ... 494s Selecting previously unselected package r-cran-rcppeigen. 494s Preparing to unpack .../222-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 494s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 495s Selecting previously unselected package r-cran-ggforce. 495s Preparing to unpack .../223-r-cran-ggforce_0.4.1-1_arm64.deb ... 495s Unpacking r-cran-ggforce (0.4.1-1) ... 495s Selecting previously unselected package r-cran-stringi. 495s Preparing to unpack .../224-r-cran-stringi_1.8.3-1_arm64.deb ... 495s Unpacking r-cran-stringi (1.8.3-1) ... 495s Selecting previously unselected package r-cran-stringr. 495s Preparing to unpack .../225-r-cran-stringr_1.5.1-1_all.deb ... 495s Unpacking r-cran-stringr (1.5.1-1) ... 495s Selecting previously unselected package r-cran-ggthemes. 495s Preparing to unpack .../226-r-cran-ggthemes_5.1.0-1_all.deb ... 495s Unpacking r-cran-ggthemes (5.1.0-1) ... 495s Selecting previously unselected package r-cran-goftest. 495s Preparing to unpack .../227-r-cran-goftest_1.2-3-1_arm64.deb ... 495s Unpacking r-cran-goftest (1.2-3-1) ... 495s Selecting previously unselected package r-cran-gridextra. 495s Preparing to unpack .../228-r-cran-gridextra_2.3-3build1_all.deb ... 495s Unpacking r-cran-gridextra (2.3-3build1) ... 496s Selecting previously unselected package r-cran-zoo. 496s Preparing to unpack .../229-r-cran-zoo_1.8-12-2_arm64.deb ... 496s Unpacking r-cran-zoo (1.8-12-2) ... 496s Selecting previously unselected package r-cran-sftime. 496s Preparing to unpack .../230-r-cran-sftime_0.2-0-6_all.deb ... 496s Unpacking r-cran-sftime (0.2-0-6) ... 496s Selecting previously unselected package r-cran-xts. 496s Preparing to unpack .../231-r-cran-xts_0.13.2-1_arm64.deb ... 496s Unpacking r-cran-xts (0.13.2-1) ... 496s Selecting previously unselected package r-cran-intervals. 496s Preparing to unpack .../232-r-cran-intervals_0.15.4-1_arm64.deb ... 496s Unpacking r-cran-intervals (0.15.4-1) ... 496s Selecting previously unselected package r-cran-spacetime. 496s Preparing to unpack .../233-r-cran-spacetime_1.3-1-1_all.deb ... 496s Unpacking r-cran-spacetime (1.3-1-1) ... 497s Selecting previously unselected package r-cran-stars. 497s Preparing to unpack .../234-r-cran-stars_0.6-4-1_all.deb ... 497s Unpacking r-cran-stars (0.6-4-1) ... 497s Selecting previously unselected package r-cran-gstat. 497s Preparing to unpack .../235-r-cran-gstat_2.1-1-2_arm64.deb ... 497s Unpacking r-cran-gstat (2.1-1-2) ... 497s Selecting previously unselected package r-cran-xfun. 497s Preparing to unpack .../236-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 497s Unpacking r-cran-xfun (0.41+dfsg-1) ... 497s Selecting previously unselected package r-cran-highr. 497s Preparing to unpack .../237-r-cran-highr_0.10+dfsg-1_all.deb ... 497s Unpacking r-cran-highr (0.10+dfsg-1) ... 497s Selecting previously unselected package r-cran-later. 497s Preparing to unpack .../238-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 497s Unpacking r-cran-later (1.3.2+dfsg-1) ... 498s Selecting previously unselected package r-cran-promises. 498s Preparing to unpack .../239-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 498s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 498s Selecting previously unselected package r-cran-httpuv. 498s Preparing to unpack .../240-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 498s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 498s Selecting previously unselected package libjs-mathjax. 498s Preparing to unpack .../241-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 498s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 502s Selecting previously unselected package r-cran-knitr. 502s Preparing to unpack .../242-r-cran-knitr_1.45+dfsg-1_all.deb ... 502s Unpacking r-cran-knitr (1.45+dfsg-1) ... 503s Selecting previously unselected package r-cran-lmtest. 503s Preparing to unpack .../243-r-cran-lmtest_0.9.40-1_arm64.deb ... 503s Unpacking r-cran-lmtest (0.9.40-1) ... 503s Selecting previously unselected package r-cran-lwgeom. 503s Preparing to unpack .../244-r-cran-lwgeom_0.2-13-3_arm64.deb ... 503s Unpacking r-cran-lwgeom (0.2-13-3) ... 503s Selecting previously unselected package r-cran-maps. 503s Preparing to unpack .../245-r-cran-maps_3.4.2-1_arm64.deb ... 503s Unpacking r-cran-maps (3.4.2-1) ... 504s Selecting previously unselected package r-cran-mapdata. 504s Preparing to unpack .../246-r-cran-mapdata_2.3.1-1_arm64.deb ... 504s Unpacking r-cran-mapdata (2.3.1-1) ... 505s Selecting previously unselected package r-cran-misctools. 505s Preparing to unpack .../247-r-cran-misctools_0.6-28-1_all.deb ... 505s Unpacking r-cran-misctools (0.6-28-1) ... 505s Selecting previously unselected package r-cran-sandwich. 505s Preparing to unpack .../248-r-cran-sandwich_3.1-0-1_all.deb ... 505s Unpacking r-cran-sandwich (3.1-0-1) ... 505s Selecting previously unselected package r-cran-maxlik. 505s Preparing to unpack .../249-r-cran-maxlik_1.5-2-1_all.deb ... 505s Unpacking r-cran-maxlik (1.5-2-1) ... 505s Selecting previously unselected package r-cran-rnetcdf. 505s Preparing to unpack .../250-r-cran-rnetcdf_2.9-1-1_arm64.deb ... 505s Unpacking r-cran-rnetcdf (2.9-1-1) ... 505s Selecting previously unselected package r-cran-tidyr. 505s Preparing to unpack .../251-r-cran-tidyr_1.3.1-1_arm64.deb ... 505s Unpacking r-cran-tidyr (1.3.1-1) ... 506s Selecting previously unselected package r-cran-ncmeta. 506s Preparing to unpack .../252-r-cran-ncmeta_0.3.6-1_all.deb ... 506s Unpacking r-cran-ncmeta (0.3.6-1) ... 506s Selecting previously unselected package r-cran-ncdfgeom. 506s Preparing to unpack .../253-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 506s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 506s Selecting previously unselected package r-cran-pbapply. 506s Preparing to unpack .../254-r-cran-pbapply_1.7-2-1_all.deb ... 506s Unpacking r-cran-pbapply (1.7-2-1) ... 506s Selecting previously unselected package r-cran-pcict. 506s Preparing to unpack .../255-r-cran-pcict_0.5-4.4-1_arm64.deb ... 506s Unpacking r-cran-pcict (0.5-4.4-1) ... 506s Selecting previously unselected package r-cran-pkgbuild. 506s Preparing to unpack .../256-r-cran-pkgbuild_1.4.3-1_all.deb ... 506s Unpacking r-cran-pkgbuild (1.4.3-1) ... 507s Selecting previously unselected package r-cran-rprojroot. 507s Preparing to unpack .../257-r-cran-rprojroot_2.0.4-1_all.deb ... 507s Unpacking r-cran-rprojroot (2.0.4-1) ... 507s Selecting previously unselected package r-cran-pkgload. 507s Preparing to unpack .../258-r-cran-pkgload_1.3.4-1_all.deb ... 507s Unpacking r-cran-pkgload (1.3.4-1) ... 507s Selecting previously unselected package r-cran-rbibutils. 507s Preparing to unpack .../259-r-cran-rbibutils_2.2.16-1_arm64.deb ... 507s Unpacking r-cran-rbibutils (2.2.16-1) ... 507s Selecting previously unselected package r-cran-rdpack. 507s Preparing to unpack .../260-r-cran-rdpack_2.6-1_all.deb ... 507s Unpacking r-cran-rdpack (2.6-1) ... 507s Selecting previously unselected package r-cran-plm. 507s Preparing to unpack .../261-r-cran-plm_2.6-3-1_all.deb ... 507s Unpacking r-cran-plm (2.6-3-1) ... 508s Selecting previously unselected package r-cran-praise. 508s Preparing to unpack .../262-r-cran-praise_1.0.0-4build1_all.deb ... 508s Unpacking r-cran-praise (1.0.0-4build1) ... 508s Selecting previously unselected package r-cran-randomforest. 508s Preparing to unpack .../263-r-cran-randomforest_4.7-1.1-1_arm64.deb ... 508s Unpacking r-cran-randomforest (4.7-1.1-1) ... 508s Selecting previously unselected package r-cran-rematch2. 508s Preparing to unpack .../264-r-cran-rematch2_2.1.2-2build1_all.deb ... 508s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 508s Selecting previously unselected package r-cran-tinytex. 508s Preparing to unpack .../265-r-cran-tinytex_0.49-1_all.deb ... 508s Unpacking r-cran-tinytex (0.49-1) ... 508s Selecting previously unselected package libjs-modernizr. 508s Preparing to unpack .../266-libjs-modernizr_2.6.2+ds1-5_all.deb ... 508s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 508s Selecting previously unselected package r-cran-xtable. 509s Preparing to unpack .../267-r-cran-xtable_1%3a1.8-4-2_all.deb ... 509s Unpacking r-cran-xtable (1:1.8-4-2) ... 509s Selecting previously unselected package r-cran-sourcetools. 509s Preparing to unpack .../268-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 509s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 509s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 509s Preparing to unpack .../269-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 509s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 509s Selecting previously unselected package r-cran-shiny. 509s Preparing to unpack .../270-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 509s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 509s Selecting previously unselected package r-cran-rmarkdown. 510s Preparing to unpack .../271-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 510s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 510s Selecting previously unselected package r-cran-survival. 510s Preparing to unpack .../272-r-cran-survival_3.5-8-1_arm64.deb ... 510s Unpacking r-cran-survival (3.5-8-1) ... 511s Selecting previously unselected package r-cran-rpart. 511s Preparing to unpack .../273-r-cran-rpart_4.1.23-1_arm64.deb ... 511s Unpacking r-cran-rpart (4.1.23-1) ... 511s Selecting previously unselected package r-cran-spatstat.utils. 511s Preparing to unpack .../274-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 511s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 511s Selecting previously unselected package r-cran-spatstat.data. 511s Preparing to unpack .../275-r-cran-spatstat.data_3.0-4-1_all.deb ... 511s Unpacking r-cran-spatstat.data (3.0-4-1) ... 511s Selecting previously unselected package r-cran-spatstat.geom. 511s Preparing to unpack .../276-r-cran-spatstat.geom_3.2-8-1_arm64.deb ... 511s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 511s Selecting previously unselected package r-cran-spatstat.random. 511s Preparing to unpack .../277-r-cran-spatstat.random_3.2-2-1_arm64.deb ... 511s Unpacking r-cran-spatstat.random (3.2-2-1) ... 511s Selecting previously unselected package 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... 521s Setting up r-cran-sf (1.0-15+dfsg-1) ... 521s Setting up r-cran-stars (0.6-4-1) ... 521s Setting up r-cran-sftime (0.2-0-6) ... 521s Setting up r-cran-areal (0.1.8+dfsg-2) ... 521s Setting up r-cran-gstat (2.1-1-2) ... 521s Setting up r-cran-raster (3.6-26-1) ... 521s Setting up r-cran-lwgeom (0.2-13-3) ... 521s Setting up r-cran-exactextractr (0.10.0-1) ... 521s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 521s Setting up autopkgtest-satdep (0) ... 521s Processing triggers for libc-bin (2.39-0ubuntu6) ... 521s Processing triggers for man-db (2.12.0-3) ... 523s Processing triggers for install-info (7.1-3) ... 558s (Reading database ... 99717 files and directories currently installed.) 558s Removing autopkgtest-satdep (0) ... 559s autopkgtest [03:53:35]: test run-unit-test: [----------------------- 559s BEGIN TEST aggregate.R 559s 559s R version 4.3.2 (2023-10-31) -- "Eye Holes" 559s Copyright (C) 2023 The R Foundation for Statistical Computing 559s Platform: aarch64-unknown-linux-gnu (64-bit) 559s 559s R is free software and comes with ABSOLUTELY NO WARRANTY. 559s You are welcome to redistribute it under certain conditions. 559s Type 'license()' or 'licence()' for distribution details. 559s 559s R is a collaborative project with many contributors. 559s Type 'contributors()' for more information and 559s 'citation()' on how to cite R or R packages in publications. 559s 559s Type 'demo()' for some demos, 'help()' for on-line help, or 559s 'help.start()' for an HTML browser interface to help. 559s Type 'q()' to quit R. 559s 560s > library(stars) 560s Loading required package: abind 560s Loading required package: sf 563s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 563s > 563s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 563s + data(air) # this loads several datasets in .GlobalEnv 563s + dim(air) 563s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 563s + 563s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 563s + n = c(3,3)) 563s + 563s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 563s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 563s + } 565s stars object with 2 dimensions and 1 attribute 565s attribute(s): 565s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 565s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 565s dimension(s): 565s from to offset delta refsys point 565s station 1 70 NA NA WGS 84 TRUE 565s time 1 4383 1998-01-01 1 days Date FALSE 565s values 565s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 565s time NULL 567s stars object with 2 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 567s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 567s dimension(s): 567s from to offset delta refsys point 567s geometry 1 9 NA NA WGS 84 FALSE 567s time 1 4383 1998-01-01 1 days Date FALSE 567s values 567s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 567s time NULL 567s > 567s > # adapted from ?read_stars: 567s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 567s > st = st_as_stars(m) 567s > attr(st, "dimensions")$y$delta = -1 567s > attr(st, "dimensions")$y$offset = 12 567s > tm = as.Date("2019-02-19") + 1:6 567s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 567s > 567s > tmp = tempfile(fileext = ".tif") 567s > write_stars(st, tmp) 567s > 567s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 567s + nBufXSize = 2, nBufYSize = 2)), "foo")) 567s stars object with 3 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. 567s foo 33 199.25 365.5 365.5 531.75 698 567s dimension(s): 567s from to offset delta refsys point x/y 567s x 1 2 0 5 WGS 84 FALSE [x] 567s y 1 2 12 -6 WGS 84 FALSE [y] 567s band 1 6 NA NA NA NA 567s > 567s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 567s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 567s stars object with 2 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. 567s A1 28 194.25 360.5 360.5 526.75 693 567s dimension(s): 567s from to offset delta refsys point 567s geom 1 4 NA NA WGS 84 FALSE 567s t 1 6 2019-02-20 1 days Date FALSE 567s values 567s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 567s t NULL 567s > (a = aggregate(st, sfc, mean)) 567s stars object with 2 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. 567s A1 28 194.25 360.5 360.5 526.75 693 567s dimension(s): 567s from to offset delta refsys point 567s geometry 1 4 NA NA WGS 84 FALSE 567s t 1 6 2019-02-20 1 days Date FALSE 567s values 567s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 567s t NULL 567s > 567s > tm0 = as.Date("2019-02-19") + -1:8 567s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 567s stars object with 3 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 567s A1 1 180.75 360.5 360.5 540.25 720 480 567s dimension(s): 567s from to offset delta refsys point x/y 567s time 1 10 2019-02-18 1 days Date NA 567s x 1 10 0 1 WGS 84 FALSE [x] 567s y 1 12 12 -1 WGS 84 FALSE [y] 567s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 567s stars object with 3 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. 567s A1 1 180.75 360.5 360.5 540.25 720 567s dimension(s): 567s from to offset delta refsys point x/y 567s time 1 6 2019-02-20 1 days Date NA 567s x 1 10 0 1 WGS 84 FALSE [x] 567s y 1 12 12 -1 WGS 84 FALSE [y] 567s > yd = function(x) as.POSIXlt(x)$yday 567s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 567s stars object with 3 dimensions and 1 attribute 567s attribute(s): 567s Min. 1st Qu. Median Mean 3rd Qu. Max. 567s A1 1 180.75 360.5 360.5 540.25 720 567s dimension(s): 567s from to offset delta refsys point values x/y 567s geometry 1 6 NA NA NA NA 50,...,55 567s x 1 10 0 1 WGS 84 FALSE NULL [x] 567s y 1 12 12 -1 WGS 84 FALSE NULL [y] 567s > 567s > # with "by" geometry not overlapping x 567s > pt = st_point(c(-10,-10)) 567s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 567s Geometry set for 5 features 567s Geometry type: GEOMETRY 567s Dimension: XY 567s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 567s Geodetic CRS: WGS 84 567s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 567s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 567s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 567s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 567s POINT (-10 -10) 567s > (a = aggregate(st, sfc, mean)) 568s stars object with 2 dimensions and 1 attribute 568s attribute(s): 568s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 568s A1 28 194.25 360.5 360.5 526.75 693 6 568s dimension(s): 568s from to offset delta refsys point 568s geometry 1 5 NA NA WGS 84 FALSE 568s t 1 6 2019-02-20 1 days Date FALSE 568s values 568s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 568s t NULL 568s > (a = aggregate(st, st, mean)) 568s stars object with 2 dimensions and 1 attribute 568s attribute(s): 568s Min. 1st Qu. Median Mean 3rd Qu. Max. 568s A1 1 180.75 360.5 360.5 540.25 720 568s dimension(s): 568s from to offset delta refsys point 568s geometry 1 120 NA NA WGS 84 FALSE 568s t 1 6 2019-02-20 1 days Date FALSE 568s values 568s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 568s t NULL 568s > 568s BEGIN TEST align.R 568s 568s R version 4.3.2 (2023-10-31) -- "Eye Holes" 568s Copyright (C) 2023 The R Foundation for Statistical Computing 568s Platform: aarch64-unknown-linux-gnu (64-bit) 568s 568s R is free software and comes with ABSOLUTELY NO WARRANTY. 568s You are welcome to redistribute it under certain conditions. 568s Type 'license()' or 'licence()' for distribution details. 568s 568s R is a collaborative project with many contributors. 568s Type 'contributors()' for more information and 568s 'citation()' on how to cite R or R packages in publications. 568s 568s Type 'demo()' for some demos, 'help()' for on-line help, or 568s 'help.start()' for an HTML browser interface to help. 568s Type 'q()' to quit R. 568s 568s > suppressPackageStartupMessages(library(stars)) 572s > set.seed(1331) 572s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 572s Geometry set for 1 feature 572s Geometry type: POINT 572s Dimension: XY 572s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 572s Projected CRS: SIRGAS 2000 / UTM zone 25S 572s POINT (291430.8 9111430) 572s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 573s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 573s > 573s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 573s > plot(b, add = TRUE, col = NA, border = 'red') 573s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 573s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 573s > st_bbox(b) 573s xmin ymin xmax ymax 573s 297116.8 9119404.1 297786.8 9120074.1 573s > bba 573s xmin ymin xmax ymax 573s 297098.3 9119392.8 297810.8 9120076.8 573s > 573s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 573s > plot(b, col = 'red', add = TRUE) 573s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 573s > 573s > b0 = st_buffer(b, -100) 573s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 573s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 573s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 573s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 573s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 573s > plot(b, col = NA, border = 'red', add = TRUE) 573s > 573s > all.equal(bbb, bba) 573s [1] TRUE 573s > 574s BEGIN TEST area.R 574s 574s R version 4.3.2 (2023-10-31) -- "Eye Holes" 574s Copyright (C) 2023 The R Foundation for Statistical Computing 574s Platform: aarch64-unknown-linux-gnu (64-bit) 574s 574s R is free software and comes with ABSOLUTELY NO WARRANTY. 574s You are welcome to redistribute it under certain conditions. 574s Type 'license()' or 'licence()' for distribution details. 574s 574s R is a collaborative project with many contributors. 574s Type 'contributors()' for more information and 574s 'citation()' on how to cite R or R packages in publications. 574s 574s Type 'demo()' for some demos, 'help()' for on-line help, or 574s 'help.start()' for an HTML browser interface to help. 574s Type 'q()' to quit R. 574s 574s > suppressPackageStartupMessages(library(stars)) 577s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 577s > x = read_stars(tif) 577s > (a = st_area(x[,1:5,1:5])) 577s stars object with 2 dimensions and 1 attribute 577s attribute(s): 577s Min. 1st Qu. Median Mean 3rd Qu. Max. 577s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 577s dimension(s): 578s from to offset delta refsys point x/y 578s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 578s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 578s > 578s > m = matrix(1:20, nrow = 5, ncol = 4) 578s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 578s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 578s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 578s stars object with 2 dimensions and 1 attribute 578s attribute(s): 578s Min. 1st Qu. Median Mean 3rd Qu. Max. 578s m 1 5.75 10.5 10.5 15.25 20 578s dimension(s): 578s from to point values x/y 578s x 1 5 FALSEMissing coordinate reference system: assuming Cartesian coordinates 578s [0,0.5),...,[4,5) [x] 578s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 578s > # image(r, axes = TRUE, col = grey((1:20)/20)) 578s > (a = st_area(r)) 578s stars object with 2 dimensions and 1 attribute 578s attribute(s): 578s Min. 1st Qu. Median Mean 3rd Qu. Max. 578s area 0.1 0.2 0.325 0.475 0.5 2 578s dimension(s): 578s from to point values x/y 578s x 1 5 FALSE [0,0.5),...,[4,5) [x] 578s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 578s > #plot(a, axes = TRUE) 578s > 578s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 578s > if (s5p != "") { 578s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 578s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 578s + if (inherits(nit.c[[1]], "units")) 578s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 578s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 578s + st_crs(nit.c) = 4326 578s + print((a <- st_area(nit.c[,1:5,1:5]))) 578s + # plot(a, axes = TRUE, border = NA) 578s + } 578s > 578s BEGIN TEST crop.R 578s 578s R version 4.3.2 (2023-10-31) -- "Eye Holes" 578s Copyright (C) 2023 The R Foundation for Statistical Computing 578s Platform: aarch64-unknown-linux-gnu (64-bit) 578s 578s R is free software and comes with ABSOLUTELY NO WARRANTY. 578s You are welcome to redistribute it under certain conditions. 578s Type 'license()' or 'licence()' for distribution details. 578s 578s R is a collaborative project with many contributors. 578s Type 'contributors()' for more information and 578s 'citation()' on how to cite R or R packages in publications. 578s 578s Type 'demo()' for some demos, 'help()' for on-line help, or 578s 'help.start()' for an HTML browser interface to help. 578s Type 'q()' to quit R. 578s 578s > suppressPackageStartupMessages(library(stars)) 581s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 581s > x = read_stars(tif) 582s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 582s + 9111328.49619133)), .Names = c("x", "y")) 582s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 582s > image(x, axes = TRUE) 582s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 582s > 582s > bb = st_bbox(pts) 582s > (xx = x[bb]) 582s stars object with 3 dimensions and 1 attribute 582s attribute(s): 582s Min. 1st Qu. Median Mean 3rd Qu. Max. 582s L7_ETMs.tif 3 56 73 70.87303 89 255 582s dimension(s): 582s from to offset delta refsys point x/y 582s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 582s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 582s band 1 6 NA NA NA NA 582s > image(xx) 582s > plot(st_as_sfc(bb), add = TRUE, col = NA) 582s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 582s Sparse geometry binary predicate list of length 1, where the predicate 582s was `contains' 582s 1: 1 582s > 582s > image(x) 582s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 582s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 582s > plot(buf, add = TRUE) 582s > 582s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 582s + crs = st_crs(x)) 582s > image(x[buf]) 583s > plot(buf, add = TRUE, col = NA) 583s > image(x[buf,crop=FALSE]) 586s > plot(buf, add = TRUE, col = NA) 586s > 586s > plot(x, rgb = 1:3) 586s > 586s > # #638: 586s > l = st_as_stars(L7_ETMs) 586s > st_bbox(l) |> st_as_sfc() -> bb 586s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 586s > st_crop(l, b) 588s stars object with 3 dimensions and 1 attribute 588s attribute(s): 588s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 588s L7_ETMs NA NA NA NaN NA NA 737088 588s dimension(s): 588s Warning message: 588s from to offset delta refsys point x/y 588s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 588s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 588s band 1 6 NA NA NA NA 588s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 588s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 588s [,1] 588s [1,] FALSE 588s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 588s > st_crop(l, b) 591s stars object with 3 dimensions and 1 attribute 591s attribute(s): 591s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 591s L7_ETMs NA NA NA NaN NA NA 737088 591s dimension(s): 591s from to offset delta refsysWarning message: 591s point x/y 591s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 591s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 591s band 1 6 NA NA NA NA 591s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 591s > 591s BEGIN TEST curvilinear.R 591s 591s R version 4.3.2 (2023-10-31) -- "Eye Holes" 591s Copyright (C) 2023 The R Foundation for Statistical Computing 591s Platform: aarch64-unknown-linux-gnu (64-bit) 591s 591s R is free software and comes with ABSOLUTELY NO WARRANTY. 591s You are welcome to redistribute it under certain conditions. 591s Type 'license()' or 'licence()' for distribution details. 591s 591s R is a collaborative project with many contributors. 591s Type 'contributors()' for more information and 591s 'citation()' on how to cite R or R packages in publications. 591s 591s Type 'demo()' for some demos, 'help()' for on-line help, or 591s 'help.start()' for an HTML browser interface to help. 591s Type 'q()' to quit R. 591s 591s > suppressPackageStartupMessages(library(stars)) 595s > 595s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 595s > if (s5p != "") { 595s + 595s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 595s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 595s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 595s + lat = read_stars(lat_ds) 595s + lon = read_stars(lon_ds) 595s + nit = read_stars(nit_ds) 595s + nit[[1]][nit[[1]] > 9e+36] = NA 595s + 595s + ll = setNames(c(lon, lat), c("x", "y")) 595s + nit.c0 = st_as_stars(nit, curvilinear = ll) 595s + 595s + # more direct method: 595s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 595s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 595s + if (inherits(nit.c[[1]], "units")) 595s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 595s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 595s + all.equal(nit.c0, nit.c) 595s + st_crs(nit.c) = 4326 595s + print(nit.c) 595s + 595s + if (FALSE && capabilities()["png"]) { 595s + png("nit1.png", 800, 800) 595s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 595s + maps::map('world', add = TRUE, col = 'red') 595s + dev.off() 595s + 595s + png("nit2.png", 800, 800) 595s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 595s + maps::map('world', add = TRUE, col = 'red') 595s + dev.off() 595s + 595s + nit.c = stars:::st_downsample(nit.c, 8) 595s + print(nit.c) 595s + 595s + png("nit3.png", 800, 800) 595s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 595s + maps::map('world', add = TRUE, col = 'red') 595s + dev.off() 595s + 595s + png("nit4.png", 800, 800) 595s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 595s + maps::map('world', add = TRUE, col = 'red') 595s + dev.off() 595s + } 595s + 595s + } 595s > 595s BEGIN TEST datasets.R 595s 595s R version 4.3.2 (2023-10-31) -- "Eye Holes" 595s Copyright (C) 2023 The R Foundation for Statistical Computing 595s Platform: aarch64-unknown-linux-gnu (64-bit) 595s 595s R is free software and comes with ABSOLUTELY NO WARRANTY. 595s You are welcome to redistribute it under certain conditions. 595s Type 'license()' or 'licence()' for distribution details. 595s 595s R is a collaborative project with many contributors. 595s Type 'contributors()' for more information and 595s 'citation()' on how to cite R or R packages in publications. 595s 595s Type 'demo()' for some demos, 'help()' for on-line help, or 595s 'help.start()' for an HTML browser interface to help. 595s Type 'q()' to quit R. 595s 595s > suppressPackageStartupMessages(library(stars)) 598s > bcsd_obs 599s stars_proxy object with 2 attributes in 2 file(s): 599s $foo 599s [1] "[...]/bcsd_obs_1999.nc:pr" 599s 599s $bar 599s [1] "[...]/bcsd_obs_1999.nc:tas" 599s 599s dimension(s): 599s from to offset delta refsys values x/y 599s x 1 81 -85 0.125 NA NULL [x] 599s y 1 33 37.12 -0.125 NA NULL [y] 599s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 599s > L7_ETMs 599s stars_proxy object with 1 attribute in 1 file(s): 599s $L7_ETMs 599s [1] "[...]/L7_ETMs.tif" 599s 599s dimension(s): 599s from to offset delta refsys point x/y 599s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 599s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 599s band 1 6 NA NA NA NA 599s > if (require(starsdata, quietly = TRUE)) { 599s + print(stars_sentinel2) 599s + } 599s > 599s BEGIN TEST dimensions.R 599s 599s R version 4.3.2 (2023-10-31) -- "Eye Holes" 599s Copyright (C) 2023 The R Foundation for Statistical Computing 599s Platform: aarch64-unknown-linux-gnu (64-bit) 599s 599s R is free software and comes with ABSOLUTELY NO WARRANTY. 599s You are welcome to redistribute it under certain conditions. 599s Type 'license()' or 'licence()' for distribution details. 599s 599s R is a collaborative project with many contributors. 599s Type 'contributors()' for more information and 599s 'citation()' on how to cite R or R packages in publications. 599s 599s Type 'demo()' for some demos, 'help()' for on-line help, or 599s 'help.start()' for an HTML browser interface to help. 599s Type 'q()' to quit R. 599s 599s > # https://github.com/r-spatial/stars/issues/295 599s > suppressPackageStartupMessages(library(stars)) 602s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 603s pr, tas, 603s > foo <- function(x, idx) stats::lowess(idx, x)$y 603s > 603s > timeline <- st_get_dimension_values(raw, "time") 603s > smooth = st_apply(raw, 603s + MARGIN = c("x", "y"), 603s + FUN = foo, 603s + idx = st_get_dimension_values(raw, "time") 603s + ) 604s > 604s > st_set_dimensions(smooth, 604s + which = "foo", 604s + values = st_get_dimension_values(raw, "time"), 604s + names = "time" 604s + ) 604s stars object with 3 dimensions and 2 attributes 604s attribute(s): 604s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 604s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 604s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 604s dimension(s): 604s from to offset delta refsys values x/y 604s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 604s x 1 81 -85 0.125 NA NULL [x] 604s y 1 33 37.12 -0.125 NA NULL [y] 604s > 604s > raw %>% 604s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 604s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 606s stars object with 3 dimensions and 2 attributes 606s attribute(s): 606s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 606s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 606s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 606s dimension(s): 606s from to offset delta refsys values x/y 606s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 606s x 1 81 -85 0.125 NA NULL [x] 606s y 1 33 37.12 -0.125 NA NULL [y] 606s > 606s BEGIN TEST downsample.R 607s 607s R version 4.3.2 (2023-10-31) -- "Eye Holes" 607s Copyright (C) 2023 The R Foundation for Statistical Computing 607s Platform: aarch64-unknown-linux-gnu (64-bit) 607s 607s R is free software and comes with ABSOLUTELY NO WARRANTY. 607s You are welcome to redistribute it under certain conditions. 607s Type 'license()' or 'licence()' for distribution details. 607s 607s R is a collaborative project with many contributors. 607s Type 'contributors()' for more information and 607s 'citation()' on how to cite R or R packages in publications. 607s 607s Type 'demo()' for some demos, 'help()' for on-line help, or 607s 'help.start()' for an HTML browser interface to help. 607s Type 'q()' to quit R. 607s 607s > library(stars) 607s Loading required package: abind 607s Loading required package: sf 610s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 610s > m = matrix(1:121, 11, 11) 610s > m 610s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 610s [1,] 1 12 23 34 45 56 67 78 89 100 111 610s [2,] 2 13 24 35 46 57 68 79 90 101 112 610s [3,] 3 14 25 36 47 58 69 80 91 102 113 610s [4,] 4 15 26 37 48 59 70 81 92 103 114 610s [5,] 5 16 27 38 49 60 71 82 93 104 115 610s [6,] 6 17 28 39 50 61 72 83 94 105 116 610s [7,] 7 18 29 40 51 62 73 84 95 106 117 610s [8,] 8 19 30 41 52 63 74 85 96 107 118 610s [9,] 9 20 31 42 53 64 75 86 97 108 119 610s [10,] 10 21 32 43 54 65 76 87 98 109 120 610s [11,] 11 22 33 44 55 66 77 88 99 110 121 610s > s = st_as_stars(m) 610s > st_downsample(s, 1) 610s stars object with 2 dimensions and 1 attribute 610s attribute(s): 610s Min. 1st Qu. Median Mean 3rd Qu. Max. 610s A1 1 28.5 61 61 93.5 121 610s dimension(s): 610s from to offset delta point x/y 610s X1 1 6 0 2 FALSE [x] 610s X2 1 6 0 2 FALSE [y] 610s > st_downsample(s, 1)[[1]] 610s [,1] [,2] [,3] [,4] [,5] [,6] 610s [1,] 1 23 45 67 89 111 610s [2,] 3 25 47 69 91 113 610s [3,] 5 27 49 71 93 115 610s [4,] 7 29 51 73 95 117 610s [5,] 9 31 53 75 97 119 610s [6,] 11 33 55 77 99 121 610s > st_downsample(s, 1, offset = 1) 610s stars object with 2 dimensions and 1 attribute 610s attribute(s): 610s Min. 1st Qu. Median Mean 3rd Qu. Max. 610s A1 13 37 61 61 85 109 610s dimension(s): 610s from to offset delta point x/y 610s X1 1 5 1 2 FALSE [x] 610s X2 1 5 1 2 FALSE [y] 610s > st_downsample(s, 1, offset = 1)[[1]] 610s [,1] [,2] [,3] [,4] [,5] 610s [1,] 13 35 57 79 101 610s [2,] 15 37 59 81 103 610s [3,] 17 39 61 83 105 610s [4,] 19 41 63 85 107 610s [5,] 21 43 65 87 109 610s > st_downsample(s, 1, FUN = mean) 610s stars object with 2 dimensions and 1 attribute 610s attribute(s): 610s Min. 1st Qu. Median Mean 3rd Qu. Max. 610s A1 7 31 55 55 79 103 610s dimension(s): 610s from to offset delta point x/y 610s X1 1 5 0 2 FALSE [x] 610s X2 1 5 0 2 FALSE [y] 610s > st_downsample(s, 1, FUN = mean)[[1]] 610s [,1] [,2] [,3] [,4] [,5] 610s [1,] 7 29 51 73 95 610s [2,] 9 31 53 75 97 610s [3,] 11 33 55 77 99 610s [4,] 13 35 57 79 101 610s [5,] 15 37 59 81 103 610s > st_downsample(s, 1, offset = 1, FUN = mean) 610s stars object with 2 dimensions and 1 attribute 610s attribute(s): 610s Min. 1st Qu. Median Mean 3rd Qu. Max. 610s A1 19 43 67 67 91 115 610s dimension(s): 610s from to offset delta point x/y 610s X1 1 5 1 2 FALSE [x] 610s X2 1 5 1 2 FALSE [y] 610s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 610s [,1] [,2] [,3] [,4] [,5] 610s [1,] 18 40 62 84 106 610s [2,] 20 42 64 86 108 610s [3,] 22 44 66 88 110 610s [4,] 24 46 68 90 112 610s [5,] 26 48 70 92 114 610s > st_downsample(s, 1, offset = c(0,1)) 610s stars object with 2 dimensions and 1 attribute 610s attribute(s): 610s Min. 1st Qu. Median Mean 3rd Qu. Max. 610s A1 12 36.5 61 61 85.5 110 610s dimension(s): 610s from to offset delta point x/y 610s X1 1 6 0 2 FALSE [x] 610s X2 1 5 1 2 FALSE [y] 610s > st_downsample(s, 1, offset = c(0,1))[[1]] 610s [,1] [,2] [,3] [,4] [,5] 610s [1,] 12 34 56 78 100 610s [2,] 14 36 58 80 102 610s [3,] 16 38 60 82 104 610s [4,] 18 40 62 84 106 610s [5,] 20 42 64 86 108 610s [6,] 22 44 66 88 110 610s > 610s BEGIN TEST ee.R 610s 610s R version 4.3.2 (2023-10-31) -- "Eye Holes" 610s Copyright (C) 2023 The R Foundation for Statistical Computing 610s Platform: aarch64-unknown-linux-gnu (64-bit) 610s 610s R is free software and comes with ABSOLUTELY NO WARRANTY. 610s You are welcome to redistribute it under certain conditions. 610s Type 'license()' or 'licence()' for distribution details. 610s 610s R is a collaborative project with many contributors. 610s Type 'contributors()' for more information and 610s 'citation()' on how to cite R or R packages in publications. 610s 610s Type 'demo()' for some demos, 'help()' for on-line help, or 610s 'help.start()' for an HTML browser interface to help. 610s Type 'q()' to quit R. 610s 611s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 611s > options(digits=15) 611s > suppressPackageStartupMessages(library(stars)) 614s > L = st_as_stars(L7_ETMs)[,,,1] 614s > set.seed(123432) 614s > st_bbox(L) |> 614s + st_as_sfc() |> 614s + st_centroid() |> 614s + st_buffer(50) |> 614s + st_sample(10) |> 614s + st_combine() |> 614s + st_convex_hull() -> ch 614s > if (interactive()) { 614s + plot(L, reset = FALSE) 614s + plot(ch, add = TRUE, border = 'red', col = NA) 614s + } 614s > if (FALSE) { 614s + e = st_extract(L, ch)[[1]] 614s + a = aggregate(L, ch, mean)[[1]] 614s + identical(e, a) # same code path 614s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 614s + all.equal(e, ee) 614s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 614s + all.equal(as.vector(ee), aw) 614s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 614s + all.equal(ee0, ee) # ?? 614s + } 614s > 614s BEGIN TEST extract.R 614s 614s R version 4.3.2 (2023-10-31) -- "Eye Holes" 614s Copyright (C) 2023 The R Foundation for Statistical Computing 614s Platform: aarch64-unknown-linux-gnu (64-bit) 614s 614s R is free software and comes with ABSOLUTELY NO WARRANTY. 614s You are welcome to redistribute it under certain conditions. 614s Type 'license()' or 'licence()' for distribution details. 614s 614s R is a collaborative project with many contributors. 614s Type 'contributors()' for more information and 614s 'citation()' on how to cite R or R packages in publications. 614s 614s Type 'demo()' for some demos, 'help()' for on-line help, or 614s 'help.start()' for an HTML browser interface to help. 614s Type 'q()' to quit R. 614s 615s > # Create 'stars' object 615s > set.seed(1331) 615s > suppressPackageStartupMessages(library(stars)) 618s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 618s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 618s > (r = st_as_stars(t(volcano))) 618s stars object with 2 dimensions and 1 attribute 618s attribute(s): 618s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 618s A1 94 108 124 130.1879 150 195 732 618s dimension(s): 618s from to offset delta point x/y 618s X1 1 61 0 1 FALSE [x] 618s X2 1 99 0 1 FALSE [y] 618s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 618s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 618s > 618s > # Create points 618s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 618s > pnt = st_as_sf(pnt) 618s > 618s > # Extract - 'st_join' 618s > x = st_join(pnt, st_as_sf(r)) 618s > 618s > # Extract - 'st_extract' 618s > y = st_extract(r, pnt) 618s > 618s > # check there are NA's: 618s > any(is.na(x)) 618s [1] TRUE 618s > # Compare 618s > all.equal(x$A1, y[[1]]) 618s [1] TRUE 618s > 618s > ################################################ 618s > if (FALSE) { 618s + 618s + ## tic: segfaults 618s + # check equal results with stars_proxy: 618s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 618s + #all.equal(x$A1, y[[1]]) 618s + #all.equal(x, y) 618s + 618s + r = c(r, 2*r, 10*r) 618s + x = st_join(pnt, st_as_sf(r)) 618s + y = st_as_sf(st_extract(r, pnt)) 618s + all.equal(x, y) 618s + 618s + ## tic: segfaults 618s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 618s + #all.equal(st_as_sf(x), y) 618s + 618s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 618s + xp = read_stars(tif, proxy = TRUE) 618s + xm = read_stars(tif, proxy = FALSE) 618s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 618s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 618s + em = st_extract(xm, pts) 618s + if (utils::packageVersion("sf") >= "0.9-7") { 618s + ep = st_extract(xp, pts) 618s + print(all.equal(ep, em, check.attributes = TRUE)) 618s + } 618s + 618s + # two-attribute objects: 618s + library(stars) 618s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 618s + xp = read_stars(c(tif, tif), proxy = TRUE) 618s + xm = read_stars(c(tif, tif), proxy = FALSE) 618s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 618s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 618s + em = st_extract(xm, pts) 618s + if (utils::packageVersion("sf") >= "0.9-7") { 618s + ep = st_extract(xp, pts) 618s + print(all.equal(ep, em, check.attributes = TRUE)) 618s + } 618s + 618s + # single-attribute, single raster objects: 618s + tif1 = paste0(tempfile(), ".tif") 618s + write_stars(xm[1,,,1], "x.tif") 618s + xp = read_stars("x.tif", proxy = TRUE) 618s + xm = read_stars("x.tif", proxy = FALSE) 618s + em = st_extract(xm, pts) 618s + if (utils::packageVersion("sf") >= "0.9-7") { 618s + ep = st_extract(xp, pts) 618s + print(all.equal(ep, em, check.attributes = TRUE)) 618s + } 618s + 618s + # multiple-file attributes: 618s + x = c( 618s + "avhrr-only-v2.19810901.nc", 618s + "avhrr-only-v2.19810902.nc", 618s + "avhrr-only-v2.19810903.nc", 618s + "avhrr-only-v2.19810904.nc", 618s + "avhrr-only-v2.19810905.nc", 618s + "avhrr-only-v2.19810906.nc", 618s + "avhrr-only-v2.19810907.nc", 618s + "avhrr-only-v2.19810908.nc", 618s + "avhrr-only-v2.19810909.nc" 618s + ) 618s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 618s + if (!identical(file_list, "")) { 618s + y = read_stars(file_list, quiet = TRUE) 618s + print(y) 618s + st_crs(y) = "OGC:CRS84" 618s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 618s + em = st_extract(y, pts) 618s + 618s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 618s + print(y) 618s + st_crs(y) = "OGC:CRS84" 618s + if (utils::packageVersion("sf") >= "0.9-7") { 618s + ep = st_extract(y, pts) 618s + print(all.equal(em, ep)) 618s + } 618s + } 618s + 618s + # nearest & bilinear comparison: 618s + if (utils::packageVersion("sf") >= "0.9-7") { 618s + set.seed(12331) 618s + s = st_as_stars(matrix(rnorm(16), 4)) 618s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 618s + s1 = st_extract(s, pts, bilinear = FALSE) 618s + s2 = st_extract(s, pts, bilinear = TRUE) 618s + s1$s2 = s2[[1]] 618s + names(s1)[c(1,3)] = c("nearest", "bilinear") 618s + print(s1[sample(10000, 5),]) 618s + } 618s + } 618s > 618s BEGIN TEST gridtypes.R 619s 619s R version 4.3.2 (2023-10-31) -- "Eye Holes" 619s Copyright (C) 2023 The R Foundation for Statistical Computing 619s Platform: aarch64-unknown-linux-gnu (64-bit) 619s 619s R is free software and comes with ABSOLUTELY NO WARRANTY. 619s You are welcome to redistribute it under certain conditions. 619s Type 'license()' or 'licence()' for distribution details. 619s 619s R is a collaborative project with many contributors. 619s Type 'contributors()' for more information and 619s 'citation()' on how to cite R or R packages in publications. 619s 619s Type 'demo()' for some demos, 'help()' for on-line help, or 619s 'help.start()' for an HTML browser interface to help. 619s Type 'q()' to quit R. 619s 619s > suppressPackageStartupMessages(library(stars)) 622s > 622s > # regular, but not spatial: 622s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values 622s a 1 3 1 1 FALSE NULL 622s b 1 3 1 1 FALSE NULL 622s band 1 2 NA NA FALSE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s a b band X 622s 1 1 1 foo 1 622s 2 2 1 foo 2 622s 3 3 1 foo 3 622s 4 1 2 foo 4 622s > try(x <- st_bbox(st)) # error 622s > 622s > # regular, geotransform: 622s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values x/y 622s x 1 3 1 1 FALSE NULL [x] 622s y 1 3 1 1 FALSE NULL [y] 622s band 1 2 NA NA FALSE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y band X 622s 1 1.5 1.5 foo 1 622s 2 2.5 1.5 foo 2 622s 3 3.5 1.5 foo 3 622s 4 1.5 2.5 foo 4 622s > as.data.frame(st, add_max=TRUE)[1:4,] 622s Error in st_bbox.dimensions(st_dimensions(obj), ...) : 622s dimensions table does not have x & y, nor an sfc dimension 622s x y band x_max y_max X 622s 1 1 1 foo 2 2 1 622s 2 2 1 foo 3 2 2 622s 3 3 1 foo 4 2 3 622s 4 1 2 foo 2 3 4 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 1 1 4 4 622s > 622s > # rectilinear with offset given: 622s > xd = c(1, 2, 4) 622s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values x/y 622s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 622s y 1 3 1 1 FALSE NULL [y] 622s band 1 2 NA NA FALSE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y band X 622s 1 1.5 1.5 foo 1 622s 2 3.0 1.5 foo 2 622s 3 5.0 1.5 foo 3 622s 4 1.5 2.5 foo 4 622s > as.data.frame(st, add_max=TRUE)[1:4,] 622s x y band x_max y_max X 622s 1 1 1 foo 2 2 1 622s 2 2 1 foo 4 2 2 622s 3 4 1 foo 6 2 3 622s 4 1 2 foo 2 3 4 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 1 1 6 4 622s > 622s > # rectilinear with midpoints given: 622s > xd = c(1, 2, 4) 622s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values x/y 622s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 622s y 1 3 0.5 1 FALSE NULL [y] 622s band 1 2 NA NA FALSE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y band X 622s 1 1.00 1 foo 1 622s 2 2.25 1 foo 2 622s 3 4.00 1 foo 3 622s 4 1.00 2 foo 4 622s > as.data.frame(st, add_max=TRUE)[1:4,] 622s x y band x_max y_max X 622s 1 0.5 0.5 foo 1.5 1.5 1 622s 2 1.5 0.5 foo 3.0 1.5 2 622s 3 3.0 0.5 foo 5.0 1.5 3 622s 4 0.5 1.5 foo 1.5 2.5 4 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 0.5 0.5 5.0 3.5 622s > 622s > # rectilinear with midpoints given, point support 622s > xd = c(1, 2, 4) 622s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values x/y 622s x 1 3 NA NA TRUE 1, 2, 4 [x] 622s y 1 3 0.5 1 TRUE NULL [y] 622s band 1 2 NA NA TRUE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y band X 622s 1 1 1 foo 1 622s 2 2 1 foo 2 622s 3 4 1 foo 3 622s 4 1 2 foo 4 622s > as.data.frame(st, add_max=TRUE)[1:4,] 622s x y band x_max y_max X 622s 1 1 0.5 foo 1 1.5 1 622s 2 2 0.5 foo 2 1.5 2 622s 3 4 0.5 foo 4 1.5 3 622s 4 1 1.5 foo 1 2.5 4 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 1.0 0.5 4.0 3.5 622s > 622s > # rectilinear with start/end given: 622s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 622s > xd = c(1, 2, 4, 8) # one more than dim of the data array 622s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values x/y 622s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 622s y 1 3 1 1 FALSE NULL [y] 622s band 1 2 NA NA FALSE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y band X 622s 1 1.5 1.5 foo 1 622s 2 3.0 1.5 foo 2 622s 3 6.0 1.5 foo 3 622s 4 1.5 2.5 foo 4 622s > as.data.frame(st, add_max=TRUE)[1:4,] 622s x y band x_max y_max X 622s 1 1 1 foo 2 2 1 622s 2 2 1 foo 4 2 2 622s 3 4 1 foo 8 2 3 622s 4 1 2 foo 2 3 4 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 1 1 8 4 622s > 622s > # with sfc: 622s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 622s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values 622s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 622s y 1 3 1 1 FALSE NULL 622s band 1 2 NA NA FALSE foo, bar 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y band X 622s 1 POINT (0 1) 1 foo 1 622s 2 POINT (2 1) 1 foo 2 622s 3 POINT (4 3) 1 foo 3 622s 4 POINT (0 1) 2 foo 4 622s > st_as_sf(st, long = TRUE)[1:4,] 622s Simple feature collection with 4 features and 3 fields 622s Geometry type: POINT 622s Dimension: XY 622s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 622s CRS: NA 622s y band X x 622s 1 1 foo 1 POINT (0 1) 622s 2 1 foo 2 POINT (2 1) 622s 3 1 foo 3 POINT (4 3) 622s 4 2 foo 4 POINT (0 1) 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 0 1 4 3 622s > 622s > # rotated/sheared: 622s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 622s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 622s stars object with 3 dimensions and 1 attribute 622s attribute(s): 622s Min. 1st Qu. Median Mean 3rd Qu. Max. 622s X 1 5.25 9.5 9.5 13.75 18 622s dimension(s): 622s from to offset delta point values x/y 622s x 1 3 1 1 FALSE NULL [x] 622s y 1 3 1 1 FALSE NULL [y] 622s band 1 2 NA NA FALSE foo, bar 622s sheared raster with parameters: 0.2 -0.2 622s > as.data.frame(st, add_max=FALSE)[1:4,] 622s x y X 622s 1 1.6 1.4 1 622s 2 2.6 1.2 2 622s 3 3.6 1.0 3 622s 4 1.8 2.4 4 622s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 622s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 622s add_max will not work for rotated/shared rasters 622s > st_bbox(st) 622s xmin ymin xmax ymax 622s 1.0 0.4 4.6 4.0 622s > 622s > # curvilinear: 622s > set.seed(13531) 622s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 622s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 622s > ll = setNames(c(lon, lat), c("lon", "lat")) 622s > d = st_dimensions(lon = 1:3, lat = 1:3) 622s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 622s > (st = st_as_stars(a, curvilinear = ll)) 623s stars object with 2 dimensions and 1 attribute 623s attribute(s): 623s Min. 1st Qu. Median Mean 3rd Qu. Max. 623s X 1 3 5 5 7 9 623s dimension(s): 623s from to refsys point values x/y 623s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 623s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 623s curvilinear grid 623s > as.data.frame(st) 623s lon lat X 623s 1 0.89 0.250 1 623s 2 0.64 0.510 2 623s 3 0.30 0.670 3 623s 4 0.69 0.890 4 623s 5 0.47 0.890 5 623s 6 0.26 0.190 6 623s 7 0.57 0.021 7 623s 8 0.27 0.220 8 623s 9 0.03 0.340 9 623s > st_bbox(st) 623s xmin ymin xmax ymax 623s 0.030 0.021 0.890 0.890 623s > 623s > # time regular: 623s > t = as.Date("2019-01-20") + 0:3 623s > d = st_dimensions(t, sfc) 623s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 623s stars object with 2 dimensions and 1 attribute 623s attribute(s): 623s Min. 1st Qu. Median Mean 3rd Qu. Max. 623s a 1 3.75 6.5 6.5 9.25 12 623s dimension(s): 623s from to offset delta refsys point values 623s X1 1 4 2019-01-20 1 days Date FALSE NULL 623s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 623s > as.data.frame(st) 623s X1 X2 a 623s 1 2019-01-20 POINT (0 1) 1 623s 2 2019-01-21 POINT (0 1) 2 623s 3 2019-01-22 POINT (0 1) 3 623s 4 2019-01-23 POINT (0 1) 4 623s 5 2019-01-20 POINT (2 1) 5 623s 6 2019-01-21 POINT (2 1) 6 623s 7 2019-01-22 POINT (2 1) 7 623s 8 2019-01-23 POINT (2 1) 8 623s 9 2019-01-20 POINT (4 3) 9 623s 10 2019-01-21 POINT (4 3) 10 623s 11 2019-01-22 POINT (4 3) 11 623s 12 2019-01-23 POINT (4 3) 12 623s > 623s > # time, rectilinear 623s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 623s > d = st_dimensions(t, sfc) 623s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 623s stars object with 2 dimensions and 1 attribute 623s attribute(s): 623s Min. 1st Qu. Median Mean 3rd Qu. Max. 623s a 1 3.75 6.5 6.5 9.25 12 623s dimension(s): 623s from to refsys point values 623s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 623s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 623s > as.data.frame(st) 623s X1 X2 a 623s 1 2019-01-20 POINT (0 1) 1 623s 2 2019-01-22 POINT (0 1) 2 623s 3 2019-01-23 POINT (0 1) 3 623s 4 2019-01-30 POINT (0 1) 4 623s 5 2019-01-20 POINT (2 1) 5 623s 6 2019-01-22 POINT (2 1) 6 623s 7 2019-01-23 POINT (2 1) 7 623s 8 2019-01-30 POINT (2 1) 8 623s 9 2019-01-20 POINT (4 3) 9 623s 10 2019-01-22 POINT (4 3) 10 623s 11 2019-01-23 POINT (4 3) 11 623s 12 2019-01-30 POINT (4 3) 12 623s > 623s BEGIN TEST mdim.R 623s 623s R version 4.3.2 (2023-10-31) -- "Eye Holes" 623s Copyright (C) 2023 The R Foundation for Statistical Computing 623s Platform: aarch64-unknown-linux-gnu (64-bit) 623s 623s R is free software and comes with ABSOLUTELY NO WARRANTY. 623s You are welcome to redistribute it under certain conditions. 623s Type 'license()' or 'licence()' for distribution details. 623s 623s R is a collaborative project with many contributors. 623s Type 'contributors()' for more information and 623s 'citation()' on how to cite R or R packages in publications. 623s 623s Type 'demo()' for some demos, 'help()' for on-line help, or 623s 'help.start()' for an HTML browser interface to help. 623s Type 'q()' to quit R. 623s 623s > Sys.setenv(TZ="") 623s > suppressPackageStartupMessages(library(stars)) 627s > matrix(1:4,2) 627s [,1] [,2] 627s [1,] 1 3 627s [2,] 2 4 627s > m = matrix(1:4,2) 627s > s = st_as_stars(m) 627s > 627s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 627s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 627s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 627s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 627s > (s = st_set_dimensions(s, 2, tm)) 627s stars object with 2 dimensions and 1 attribute 627s attribute(s): 627s Min. 1st Qu. Median Mean 3rd Qu. Max. 627s A1 1 1.75 2.5 2.5 3.25 4 627s dimension(s): 627s from to offset delta refsys point 627s X1 1 2 NA NA WGS 84 TRUE 627s X2 1 2 2023-03-04 12:35:00 Universal 1 hours POSIXct FALSE 627s values 627s X1 POINT (0 1), POINT (3 2) 627s X2 NULL 627s > f = tempfile(fileext = ".nc") 627s > if (compareVersion(sf_extSoftVersion()["GDAL"], "3.4.0") > -1) { 627s + write_mdim(s, f, as_float = FALSE) 627s + s2 = read_mdim(f) 627s + print(s2) 627s + print(all.equal(s, s2, check.attributes = FALSE)) 627s + print(all.equal(s, s2)) 627s + 627s + st_crs(sfc) = st_crs(s2) 627s + st_crs(s) = st_crs(s2) 627s + tm = as.Date("2023-02-25") + 0:1 627s + sd = st_set_dimensions(s, 2, tm) 627s + print(sd) 627s + sd = st_set_dimensions(sd, 1, sfc) 627s + print(sd) 627s + f = tempfile(fileext = ".nc") 627s + write_mdim(sd, f) 627s + sd2 = read_mdim(f) 627s + print(sd2) 627s + print(all.equal(sd, sd2, check.attributes = FALSE)) 627s + print(all.equal(sd, sd2)) 627s + } 627s stars object with 2 dimensions and 1 attribute 627s attribute(s): 627s Min. 1st Qu. Median Mean 3rd Qu. Max. 627s A1 1 1.75 2.5 2.5 3.25 4 627s dimension(s): 627s from to offset delta refsys point 627s X1 1 2 NA NA WGS 84 TRUE 627s X2 1 2 2023-03-04 12:35:00 UTC 1 hours POSIXct NA 627s values 627s X1 POINT (0 1), POINT (3 2) 627s X2 NULL 627s [1] TRUE 627s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 627s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 627s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 627s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 627s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 627s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 627s stars object with 2 dimensions and 1 attribute 627s attribute(s): 627s Min. 1st Qu. Median Mean 3rd Qu. Max. 627s A1 1 1.75 2.5 2.5 3.25 4 627s dimension(s): 627s from to offset delta refsys point values 627s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 627s X2 1 2 2023-02-25 1 days Date FALSE NULL 627s stars object with 2 dimensions and 1 attribute 627s attribute(s): 627s Min. 1st Qu. Median Mean 3rd Qu. Max. 627s A1 1 1.75 2.5 2.5 3.25 4 627s dimension(s): 627s from to offset delta refsys point values 627s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 627s X2 1 2 2023-02-25 1 days Date FALSE NULL 627s stars object with 2 dimensions and 1 attribute 627s attribute(s): 627s Min. 1st Qu. Median Mean 3rd Qu. Max. 627s A1 1 1.75 2.5 2.5 3.25 4 627s dimension(s): 627s from to offset delta refsys point values 627s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 627s X2 1 2 2023-02-25 1 days Date NA NULL 627s [1] TRUE 627s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 627s Warning messages: 627s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 627s GDAL Error 6: SetIndexingVariable() not implemented 627s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 627s GDAL Error 6: SetIndexingVariable() not implemented 627s 3: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 627s GDAL Error 6: SetIndexingVariable() not implemented 627s 4: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 627s GDAL Error 6: SetIndexingVariable() not implemented 627s > 627s BEGIN TEST nc.R 627s 627s R version 4.3.2 (2023-10-31) -- "Eye Holes" 627s Copyright (C) 2023 The R Foundation for Statistical Computing 627s Platform: aarch64-unknown-linux-gnu (64-bit) 627s 627s R is free software and comes with ABSOLUTELY NO WARRANTY. 627s You are welcome to redistribute it under certain conditions. 627s Type 'license()' or 'licence()' for distribution details. 627s 627s R is a collaborative project with many contributors. 627s Type 'contributors()' for more information and 627s 'citation()' on how to cite R or R packages in publications. 627s 627s Type 'demo()' for some demos, 'help()' for on-line help, or 627s 'help.start()' for an HTML browser interface to help. 627s Type 'q()' to quit R. 627s 628s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 628s > suppressPackageStartupMessages(library(sf)) 631s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 631s > m = st_set_geometry(nc, NULL) 631s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 631s > dim(n) = c(county = 100, var = 3, year = 2) 631s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 631s > suppressPackageStartupMessages(library(stars)) 631s > (st = st_as_stars(pop = n)) 631s stars object with 3 dimensions and 1 attribute 631s attribute(s): 631s Min. 1st Qu. Median Mean 3rd Qu. Max. 631s pop 0 8 538 1657.032 1784 30757 631s dimension(s): 631s from to values 631s county 1 100 Ashe,...,Brunswick 631s var 1 3 BIR , SID , NWBIR 631s year 1 2 1974, 1979 631s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 631s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 631s stars object with 3 dimensions and 1 attribute 631s attribute(s): 631s Min. 1st Qu. Median Mean 3rd Qu. Max. 631s pop 0 8 538 1657.032 1784 30757 631s dimension(s): 631s from to refsys point 631s geometries 1 100 NAD27 FALSE 631s var 1 3 NA NA 631s year 1 2 NA NA 631s values 631s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 631s var BIR , SID , NWBIR 631s year 1974, 1979 631s > foo 631s stars object with 3 dimensions and 1 attribute 631s attribute(s): 631s Min. 1st Qu. Median Mean 3rd Qu. Max. 631s pop 0 8 538 1657.032 1784 30757 631s dimension(s): 631s from to refsys point 631s county 1 100 NAD27 FALSE 631s var 1 3 NA NA 631s year 1 2 NA NA 631s values 631s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 631s var BIR , SID , NWBIR 631s year 1974, 1979 631s > st_bbox(foo) 631s xmin ymin xmax ymax 631s -84.32385 33.88199 -75.45698 36.58965 631s > (x = st_as_sf(foo)) 631s Simple feature collection with 100 features and 6 fields 631s Geometry type: MULTIPOLYGON 631s Dimension: XY 631s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 631s Geodetic CRS: NAD27 631s First 10 features: 631s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 631s 1 1091 1 10 1364 0 19 631s 2 487 0 10 542 3 12 631s 3 3188 5 208 3616 6 260 631s 4 508 1 123 830 2 145 631s 5 1421 9 1066 1606 3 1197 631s 6 1452 7 954 1838 5 1237 631s 7 286 0 115 350 2 139 631s 8 420 0 254 594 2 371 631s 9 968 4 748 1190 2 844 631s 10 1612 1 160 2038 5 176 631s county 631s 1 MULTIPOLYGON (((-81.47276 3... 631s 2 MULTIPOLYGON (((-81.23989 3... 631s 3 MULTIPOLYGON (((-80.45634 3... 631s 4 MULTIPOLYGON (((-76.00897 3... 631s 5 MULTIPOLYGON (((-77.21767 3... 631s 6 MULTIPOLYGON (((-76.74506 3... 631s 7 MULTIPOLYGON (((-76.00897 3... 631s 8 MULTIPOLYGON (((-76.56251 3... 631s 9 MULTIPOLYGON (((-78.30876 3... 631s 10 MULTIPOLYGON (((-80.02567 3... 631s > frac = function(x) x[2] / x[1] 631s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 631s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 631s > st_apply(foo, c(1,3), frac) 631s stars object with 2 dimensions and 1 attribute 631s attribute(s): 631s Min. 1st Qu. Median Mean 3rd Qu. Max. 631s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 631s dimension(s): 631s from to refsys point 631s county 1 100 NAD27 FALSE 631s year 1 2 NA NA 631s values 631s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 631s year 1974, 1979 631s > st_apply(foo, c(1,3), frac2) 631s stars object with 3 dimensions and 1 attribute 631s attribute(s): 631s Min. 1st Qu. Median Mean 3rd Qu. Max. 631s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 631s dimension(s): 631s from to refsys point 631s frac2 1 2 NA NA 631s county 1 100 NAD27 FALSE 631s year 1 2 NA NA 631s values 631s frac2 sidsr, nwbr 631s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 631s year 1974, 1979 631s > st_apply(foo, c(1,3), frac2an) 631s stars object with 3 dimensions and 1 attribute 631s attribute(s): 631s Min. 1st Qu. Median Mean 3rd Qu. Max. 631s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 631s dimension(s): 631s from to refsys point 631s frac2an 1 2 NA NA 631s county 1 100 NAD27 FALSE 631s year 1 2 NA NA 631s values 631s frac2an NULL 631s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 631s year 1974, 1979 631s > library(abind) 631s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 632s stars object with 3 dimensions and 1 attribute 632s attribute(s): 632s Min. 1st Qu. Median Mean 3rd Qu. Max. 632s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 632s dimension(s): 632s from to refsys point 632s county 1 100 NAD27 FALSE 632s year 1 2 NA NA 632s frac2 1 2 NA NA 632s values 632s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 632s year 1974, 1979 632s frac2 sidsr, nwbr 632s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 632s > all.equal(st_dimensions(x), st_dimensions(y)) 632s [1] TRUE 632s > 632s > split(foo, 2) 632s stars object with 2 dimensions and 3 attributes 632s attribute(s): 632s Min. 1st Qu. Median Mean 3rd Qu. Max. 632s BIR 248 1176.75 2265 3761.770 4450.75 30757 632s SID 0 2.00 5 7.515 9.00 57 632s NWBIR 1 206.00 742 1201.810 1315.75 11631 632s dimension(s): 632s from to refsys point 632s county 1 100 NAD27 FALSE 632s year 1 2 NA NA 632s values 632s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 632s year 1974, 1979 632s > split(foo, 3) 632s stars object with 2 dimensions and 2 attributes 632s attribute(s): 632s Min. 1st Qu. Median Mean 3rd Qu. Max. 632s 1974 0 8 501.5 1452.367 1580.50 21588 632s 1979 0 9 614.0 1861.697 2040.25 30757 632s dimension(s): 632s from to refsys point 632s county 1 100 NAD27 FALSE 632s var 1 3 NA NA 632s values 632s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 632s var BIR , SID , NWBIR 632s > 632s > st_crs(foo) 632s Coordinate Reference System: 632s User input: NAD27 632s wkt: 632s GEOGCRS["NAD27", 632s DATUM["North American Datum 1927", 632s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 632s LENGTHUNIT["metre",1]]], 632s PRIMEM["Greenwich",0, 632s ANGLEUNIT["degree",0.0174532925199433]], 632s CS[ellipsoidal,2], 632s AXIS["geodetic latitude (Lat)",north, 632s ORDER[1], 632s ANGLEUNIT["degree",0.0174532925199433]], 632s AXIS["geodetic longitude (Lon)",east, 632s ORDER[2], 632s ANGLEUNIT["degree",0.0174532925199433]], 632s USAGE[ 632s SCOPE["Geodesy."], 632s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 632s BBOX[7.15,167.65,83.17,-47.74]], 632s ID["EPSG",4267]] 632s > plot(foo) 632s > 632s > # subset vector cube: 632s > foo[nc[1]] 633s stars object with 3 dimensions and 1 attribute 633s attribute(s): 633s Min. 1st Qu. Median Mean 3rd Qu. Max. 633s pop 0 8 538 1657.032 1784 30757 633s dimension(s): 633s from to refsys point 633s county 1 100 NAD27 FALSE 633s var 1 3 NA NA 633s year 1 2 NA NA 633s values 633s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 633s var BIR , SID , NWBIR 633s year 1974, 1979 633s > 633s BEGIN TEST plot.R 633s 633s R version 4.3.2 (2023-10-31) -- "Eye Holes" 633s Copyright (C) 2023 The R Foundation for Statistical Computing 633s Platform: aarch64-unknown-linux-gnu (64-bit) 633s 633s R is free software and comes with ABSOLUTELY NO WARRANTY. 633s You are welcome to redistribute it under certain conditions. 633s Type 'license()' or 'licence()' for distribution details. 633s 633s R is a collaborative project with many contributors. 633s Type 'contributors()' for more information and 633s 'citation()' on how to cite R or R packages in publications. 633s 633s Type 'demo()' for some demos, 'help()' for on-line help, or 633s 'help.start()' for an HTML browser interface to help. 633s Type 'q()' to quit R. 633s 634s > suppressPackageStartupMessages(library(stars)) 637s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 637s + data(air) # this loads several datasets in .GlobalEnv 637s + dim(air) 637s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 637s + aq = st_as_stars(list(PM10 = air), dimensions = d) 637s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 637s + st_geometry(aq) 637s + } 640s Geometry set for 70 features 640s Geometry type: POINT 640s Dimension: XY 640s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 640s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 640s First 5 geometries: 640s POINT (9.585911 53.67057) 640s POINT (9.68503 53.52418) 640s POINT (9.791584 54.07312) 640s POINT (13.64701 52.44775) 640s > POINT (13.29635 52.65315) 640s 640s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 640s > if (csv != "") { 640s + rgb = read.csv(csv, header = TRUE, sep = ";") 640s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 640s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 640s + } 640s > 640s > # https://github.com/r-spatial/stars/issues/233 : 640s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 640s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 640s > plot(output) 640s > 640s Warning message: 640s In plot.stars(output) : 640s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 640s BEGIN TEST predict.R 640s 640s R version 4.3.2 (2023-10-31) -- "Eye Holes" 640s Copyright (C) 2023 The R Foundation for Statistical Computing 640s Platform: aarch64-unknown-linux-gnu (64-bit) 640s 640s R is free software and comes with ABSOLUTELY NO WARRANTY. 640s You are welcome to redistribute it under certain conditions. 640s Type 'license()' or 'licence()' for distribution details. 640s 640s R is a collaborative project with many contributors. 640s Type 'contributors()' for more information and 640s 'citation()' on how to cite R or R packages in publications. 640s 640s Type 'demo()' for some demos, 'help()' for on-line help, or 640s 'help.start()' for an HTML browser interface to help. 640s Type 'q()' to quit R. 640s 641s > suppressPackageStartupMessages(library(stars)) 644s > # predict: 644s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 644s > (x = read_stars(tif)) 644s stars object with 3 dimensions and 1 attribute 644s attribute(s): 644s Min. 1st Qu. Median Mean 3rd Qu. Max. 644s L7_ETMs.tif 1 54 69 68.91242 86 255 644s dimension(s): 645s from to offset delta refsys point x/y 645s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 645s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 645s band 1 6 NA NA NA NA 645s > st_crs(x) = st_crs(x) # cleans trailing space 645s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 645s > x = predict(x, model) 648s > 648s > (y = read_stars(tif, proxy = TRUE)) 648s stars_proxy object with 1 attribute in 1 file(s): 648s $L7_ETMs.tif 648s [1] "[...]/L7_ETMs.tif" 648s 648s dimension(s): 648s from to offset delta refsys point x/y 648s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 648s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 648s band 1 6 NA NA NA NA 648s > (yp = predict(y, model)) 648s stars_proxy object with 1 attribute in 1 file(s): 648s $L7_ETMs.tif 648s [1] "[...]/L7_ETMs.tif" 648s 648s dimension(s): 648s from to offset delta refsys point x/y 648s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 648s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 648s band 1 6 NA NA NA NA 648s call_list: 648s [[1]] 648s predict(object = object, model = model) 648s attr(,".Environment") 648s 648s 648s This object has pending lazy operations: dimensions as printed may not reflect this. 648s > all.equal(x, st_as_stars(yp)) 651s [1] TRUE 651s > 651s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 651s > (y_spl = split(yy, 3)) 651s stars_proxy object with 1 attribute in 1 file(s): 651s $L7_ETMs.tif 651s [1] "[...]/L7_ETMs.tif" 651s 651s dimension(s): 651s from to offset delta refsys point values 651s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 651s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 651s band 1 6 NA NA NA NA band1,...,band6 651s x/y 651s x [x] 651s y [y] 651s band 651s call_list: 651s [[1]] 651s split(x = x, 3) 651s attr(,".Environment") 651s 651s 651s This object has pending lazy operations: dimensions as printed may not reflect this. 651s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 651s x y band1 band2 band3 band4 band5 band6 651s 1 288790.5 9120747 69 56 46 79 86 46 651s 2 288819.0 9120747 69 57 49 75 88 49 651s 3 288847.5 9120747 63 52 45 66 75 41 651s > 651s BEGIN TEST proxy.R 651s 651s R version 4.3.2 (2023-10-31) -- "Eye Holes" 651s Copyright (C) 2023 The R Foundation for Statistical Computing 651s Platform: aarch64-unknown-linux-gnu (64-bit) 651s 651s R is free software and comes with ABSOLUTELY NO WARRANTY. 651s You are welcome to redistribute it under certain conditions. 651s Type 'license()' or 'licence()' for distribution details. 651s 651s R is a collaborative project with many contributors. 651s Type 'contributors()' for more information and 651s 'citation()' on how to cite R or R packages in publications. 651s 651s Type 'demo()' for some demos, 'help()' for on-line help, or 651s 'help.start()' for an HTML browser interface to help. 651s Type 'q()' to quit R. 651s 652s > Sys.setenv(TZ="UTC") 652s > suppressPackageStartupMessages(library(sf)) 655s > suppressPackageStartupMessages(library(stars)) 655s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 655s > (r = read_stars(tif, proxy = TRUE)) 655s stars_proxy object with 1 attribute in 1 file(s): 655s $L7_ETMs.tif 655s [1] "[...]/L7_ETMs.tif" 655s 655s dimension(s): 655s from to offset delta refsys point x/y 655s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 655s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 655s band 1 6 NA NA NA NA 655s > if (interactive()) { 655s + plot(r) 655s + } 655s > dim(r) 655s x y band 655s 349 352 6 655s > r[,,,2:3] 655s stars_proxy object with 1 attribute in 1 file(s): 655s $L7_ETMs.tif 655s [1] "[...]/L7_ETMs.tif" 655s 655s dimension(s): 655s from to offset delta refsys point x/y 655s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 655s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 655s band 2 3 NA NA NA NA 655s > r+r 655s stars_proxy object with 1 attribute in 1 file(s): 655s $L7_ETMs.tif 655s [1] "[...]/L7_ETMs.tif" 655s 655s dimension(s): 656s from to offset delta refsys point x/y 656s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 656s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 656s band 1 6 NA NA NA NA 656s call_list: 656s [[1]] 656s e1 + e2 656s attr(,".Environment") 656s 656s 656s This object has pending lazy operations: dimensions as printed may not reflect this. 656s > st_as_stars(sin(r), downsample = 2) 656s stars object with 3 dimensions and 1 attribute 656s attribute(s): 656s Min. 1st Qu. Median Mean 3rd Qu. Max. 656s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 656s dimension(s): 656s from to offset delta refsys point x/y 656s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 656s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 656s band 1 6 NA NA NA NA 656s > aperm(r, c(3,2,1)) 656s stars_proxy object with 1 attribute in 1 file(s): 656s $L7_ETMs.tif 656s [1] "[...]/L7_ETMs.tif" 656s 656s dimension(s): 656s from to offset delta refsys point x/y 656s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 656s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 656s band 1 6 NA NA NA NA 656s call_list: 656s [[1]] 656s aperm(a = a, perm = perm) 656s attr(,".Environment") 656s 656s 656s This object has pending lazy operations: dimensions as printed may not reflect this. 656s > if (interactive()) { 656s + plot(r) 656s + } 656s > (xx = c(r,r)) 656s stars_proxy object with 2 attributes in 2 file(s): 656s $L7_ETMs.tif 656s [1] "[...]/L7_ETMs.tif" 656s 656s $L7_ETMs.tif 656s [1] "[...]/L7_ETMs.tif" 656s 656s dimension(s): 656s from to offset delta refsys point x/y 656s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 656s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 656s band 1 6 NA NA NA NA 656s > st_redimension(xx) 656s stars_proxy object with 1 attribute in 2 file(s): 656s $L7_ETMs.tif.L7_ETMs.tif 656s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 656s 656s dimension(s): 656s from to offset delta refsys point 656s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 656s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 656s band 1 6 NA NA NA NA 656s new_dim 1 2 NA NA NA NA 656s values x/y 656s x NULL [x] 656s y NULL [y] 656s band NULL 656s new_dim L7_ETMs.tif, L7_ETMs.tif 656s > st_as_stars(r) 657s stars object with 3 dimensions and 1 attribute 657s attribute(s): 657s Min. 1st Qu. Median Mean 3rd Qu. Max. 657s L7_ETMs.tif 1 54 69 68.91242 86 255 657s dimension(s): 657s from to offset delta refsys point x/y 657s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 657s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 657s band 1 6 NA NA NA NA 657s > (y = st_apply(r, 1:2, max)) 657s stars_proxy object with 1 attribute in 1 file(s): 657s $L7_ETMs.tif 657s [1] "[...]/L7_ETMs.tif" 657s 657s dimension(s): 657s from to offset delta refsys point x/y 657s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 657s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 657s band 1 6 NA NA NA NA 657s call_list: 657s [[1]] 657s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 657s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 657s attr(,".Environment") 657s 657s 657s This object has pending lazy operations: dimensions as printed may not reflect this. 657s > (yy = st_as_stars(y, downsample = 1)) 658s stars object with 2 dimensions and 1 attribute 658s attribute(s): 658s Min. 1st Qu. Median Mean 3rd Qu. Max. 658s max 55 85 96 99.38568 113 255 658s dimension(s): 658s from to offset delta refsys point x/y 658s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 658s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 658s > (y = adrop(st_apply(r, c("x", "y"), max))) 658s stars_proxy object with 1 attribute in 1 file(s): 658s $L7_ETMs.tif 658s [1] "[...]/L7_ETMs.tif" 658s 658s dimension(s): 658s from to offset delta refsys point x/y 658s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 658s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 658s band 1 6 NA NA NA NA 658s call_list: 658s [[1]] 658s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 658s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 658s attr(,".Environment") 658s 658s 658s [[2]] 658s adrop(x = x, drop = drop) 658s attr(,".Environment") 658s 658s 658s This object has pending lazy operations: dimensions as printed may not reflect this. 658s > (yy = st_as_stars(y, downsample = 1)) 658s stars object with 2 dimensions and 1 attribute 658s attribute(s): 658s Min. 1st Qu. Median Mean 3rd Qu. Max. 658s max 55 85 96 99.38568 113 255 658s dimension(s): 659s fromWarning message: 659s to offset delta refsys point x/y 659s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 659s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 659s > plot(yy) 659s > (y = adrop(st_apply(r, c("x", "band"), max))) 659s stars_proxy object with 1 attribute in 1 file(s): 659s $L7_ETMs.tif 659s [1] "[...]/L7_ETMs.tif" 659s 659s dimension(s): 659s from to offset delta refsys point x/y 659s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 659s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 659s band 1 6 NA NA NA NA 659s call_list: 659s [[1]] 659s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 659s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 659s attr(,".Environment") 659s 659s 659s [[2]] 659s adrop(x = x, drop = drop) 659s attr(,".Environment") 659s 659s 659s This object has pending lazy operations: dimensions as printed may not reflect this. 659s > (yy = st_as_stars(y, downsample = 1)) 659s stars object with 2 dimensions and 1 attribute 659s attribute(s): 659s Min. 1st Qu. Median Mean 3rd Qu. Max. 659s max 77 111 133 137.8505 157 255 659s dimension(s): 659s from to offset delta refsys point 659s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 659s band 1 6 NA NA NA NA 659s > rm(yy) 659s > 659s > (xx = c(r,r)) 659s stars_proxy object with 2 attributes in 2 file(s): 659s $L7_ETMs.tif 659s In FUN(X[[i]], ...) : 659s st_apply on x/y dimensions applied to downsampled image(s) 659s [1] "[...]/L7_ETMs.tif" 659s 659s $L7_ETMs.tif 659s [1] "[...]/L7_ETMs.tif" 659s 659s dimension(s): 659s from to offset delta refsys point x/y 659s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 659s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 659s band 1 6 NA NA NA NA 659s > names(xx) = c("a", "b") 659s > xx["a"] 659s stars_proxy object with 1 attribute in 1 file(s): 659s $a 659s [1] "[...]/L7_ETMs.tif" 659s 659s dimension(s): 659s from to offset delta refsys point x/y 659s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 659s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 659s band 1 6 NA NA NA NA 659s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 659s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 659s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 659s + crs = st_crs(r)) 659s > r = r[buf] # crops 660s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 660s > 660s > # c: 660s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 660s > if (FALSE && f != "") { 660s + files = c("avhrr-only-v2.19810901.nc", 660s + "avhrr-only-v2.19810902.nc", 660s + "avhrr-only-v2.19810903.nc", 660s + "avhrr-only-v2.19810904.nc", 660s + "avhrr-only-v2.19810905.nc", 660s + "avhrr-only-v2.19810906.nc", 660s + "avhrr-only-v2.19810907.nc", 660s + "avhrr-only-v2.19810908.nc", 660s + "avhrr-only-v2.19810909.nc") 660s + l = list() 660s + for (f in files) { 660s + from = system.file(paste0("netcdf/", f), package = "starsdata") 660s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 660s + } 660s + ret = do.call(c, l) 660s + print(ret) 660s + all = system.file(paste0("netcdf/", files), package = "starsdata") 660s + ret = read_stars(all, sub = c("sst", "anom")) 660s + print(ret) 660s + print(st_redimension(ret)) # collapse the two attributes into new dimension 660s + 660s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 660s + #print(ret) 660s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 660s + #print(ret) 660s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 660s + print(ret) 660s + } 660s > 660s > # demonstrate that environments work: 660s > x = read_stars(tif, proxy = TRUE) 660s > f = function(x) { 660s + g = function(xx) { 660s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 660s + st_apply(xx, 1:2, ndvi) 660s + } 660s + g(x) 660s + } 660s > (x = f(x)) 660s stars_proxy object with 1 attribute in 1 file(s): 660s $L7_ETMs.tif 660s [1] "[...]/L7_ETMs.tif" 660s 660s dimension(s): 660s from to offset delta refsys point x/y 660s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 660s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 660s band 1 6 NA NA NA NA 660s call_list: 660s [[1]] 660s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 660s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 660s attr(,".Environment") 660s 660s 660s This object has pending lazy operations: dimensions as printed may not reflect this. 660s > st_as_stars(x) 660s stars object with 2 dimensions and 1 attribute 660s attribute(s): 660s Min. 1st Qu. Median Mean 3rd Qu. Max. 660s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 660s dimension(s): 660s from to offset delta refsys point x/y 660s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 660s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 660s > 660s BEGIN TEST raster.R 660s 660s R version 4.3.2 (2023-10-31) -- "Eye Holes" 660s Copyright (C) 2023 The R Foundation for Statistical Computing 660s Platform: aarch64-unknown-linux-gnu (64-bit) 660s 660s R is free software and comes with ABSOLUTELY NO WARRANTY. 660s You are welcome to redistribute it under certain conditions. 660s Type 'license()' or 'licence()' for distribution details. 660s 660s R is a collaborative project with many contributors. 660s Type 'contributors()' for more information and 660s 'citation()' on how to cite R or R packages in publications. 660s 660s Type 'demo()' for some demos, 'help()' for on-line help, or 660s 'help.start()' for an HTML browser interface to help. 660s Type 'q()' to quit R. 660s 661s > options(rgdal_show_exportToProj4_warnings = "none") 661s > suppressPackageStartupMessages(library(stars)) 664s > 664s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 664s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 664s + 664s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 664s + (x = read_stars(tif)) 664s + (r = as(x, "Raster")) 664s + (y = st_as_stars(r)) 664s + 664s + # single band: 664s + x = adrop(x[,,,1]) 664s + r = as(x, "Raster") 664s + (y = st_as_stars(r)) 664s + 664s + # proxy: 664s + (x = read_stars(tif, proxy = TRUE)) 664s + (r = as(x, "Raster")) 664s + (y = st_as_stars(r)) 664s + (y2 = st_as_stars(r, proxy = TRUE)) 664s + } 684s stars_proxy object with 1 attribute in 1 file(s): 684s $L7_ETMs.tif 684s [1] "[...]/L7_ETMs.tif" 684s 684s dimension(s): 684s from to offset delta refsys point x/y 684s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 684s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 684s band 1 6 NA NA NA NA 684s > 684s > if (require(terra, quietly = TRUE)) { 684s + ## terra ------------- 684s + stopifnot(require(terra)) 684s + (x = read_stars(tif)) 684s + (r = as(x, "SpatRaster")) 684s + (y = st_as_stars(r)) 684s + 684s + # single band: 684s + x = adrop(x[,,,1]) 684s + r = as(x, "SpatRaster") 684s + (y = st_as_stars(r)) 684s + 684s + # proxy: 684s + (x = read_stars(tif, proxy = TRUE)) 684s + (r = as(x, "SpatRaster")) 684s + (y = st_as_stars(r)) 684s + (y2 = st_as_stars(r, proxy = TRUE)) 684s + 684s + f = system.file("tif/lc.tif", package = "stars") 684s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 684s + levels(lc[[1]]) 684s + r = rast(lc) 684s + e = attr(lc[[1]], "exclude") 684s + 684s + if (packageVersion("terra") >= "1.5.48") { 684s + 684s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 684s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 684s + 684s + r<- rast(nrow=10, ncol=10) 684s + set.seed(5) 684s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 684s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 684s + 684s + r2<- rast(nrow=10, ncol=10) 684s + set.seed(6) 685s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 685s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 685s + 685s + r3<- c(r,r2) 685s + names(r3)<- c("lyr.1", "lyr.2") 685s + 685s + r3_stars<- st_as_stars(r3) 685s + 685s + st_redimension(r3_stars) |> print() 685s + rast(r3_stars) |> levels() |> print() 685s + 685s + m = matrix(1:121, 11, 11) 685s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 685s + s = st_as_stars(bb, values = m) 685s + r = rast(s) 685s + aggregate(r, 2) |> st_as_stars() -> r.s 685s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 685s + } 685s + } 686s [1] TRUE 686s [1] TRUE 686s stars object with 3 dimensions and 1 attribute 686s attribute(s): 686s lyr.1.lyr.2 686s c1:34 686s c2:32 686s c3:34 686s x1:28 686s x2:37 686s x3:35 686s dimension(s): 686s from to offset delta refsys values x/y 686s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 686s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 686s new_dim 1 2 NA NA NA lyr.1, lyr.2 687s [[1]] 687s IDs categories 687s 1 1 c1 687s 2 2 c2 687s 3 3 c3 687s 687s [[2]] 687s IDs categories 687s 1 0 x1 687s 2 2 x2 687s 3 3 x3 687s 687s > 687s > 687s BEGIN TEST rasterize.R 687s 687s R version 4.3.2 (2023-10-31) -- "Eye Holes" 687s Copyright (C) 2023 The R Foundation for Statistical Computing 687s Platform: aarch64-unknown-linux-gnu (64-bit) 687s 687s R is free software and comes with ABSOLUTELY NO WARRANTY. 687s You are welcome to redistribute it under certain conditions. 687s Type 'license()' or 'licence()' for distribution details. 687s 687s R is a collaborative project with many contributors. 687s Type 'contributors()' for more information and 687s 'citation()' on how to cite R or R packages in publications. 687s 687s Type 'demo()' for some demos, 'help()' for on-line help, or 687s 'help.start()' for an HTML browser interface to help. 687s Type 'q()' to quit R. 687s 687s > suppressPackageStartupMessages(library(stars)) 690s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 690s > (x = st_rasterize(nc)) # default grid: 692s stars object with 2 dimensions and 12 attributes 692s attribute(s): 693s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 693s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 693s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 693s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 693s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 693s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 693s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 693s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 693s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 693s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 693s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 693s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 693s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 693s dimension(s): 693s from to offset delta refsys point x/y 693s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 693s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 693s > plot(x, axes = TRUE) 693s > # a bit more customized grid: 693s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 693s stars object with 2 dimensions and 12 attributes 693s attribute(s): 693s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 693s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 693s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 693s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 693s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 693s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 693s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 693s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 693s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 693s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 693s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 693s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 693s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 693s dimension(s): 693s from to offset delta refsys point x/y 693s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 693s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 693s > plot(x, axes = TRUE) 693s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 693s Simple feature collection with 2 features and 1 field 693s Geometry type: LINESTRING 693s Dimension: XY 693s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 693s CRS: NA 693s a 693s 1 1 693s 2 2 693s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 693s 1 LINESTRING (0.1 0, 1.1 1) 693s 2 LINESTRING (0 0.05, 1 0.05) 693s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 693s stars object with 2 dimensions and 1 attribute 693s attribute(s): 693s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 693s values NA NA NA NaN NA NA 100 693s dimension(s): 693s from to offset delta x/y 693s x 1 10 0 0.1 [x] 693s y 1 10 1 -0.1 [y] 693s > # the following two plots confirm that (only) the 693s > # upper-left corner is part of the grid cell (when dy is negative), leading 693s > # to a seemingly half-gridcell-shift problem: 693s > ## sf_extSoftVersion()["GDAL"] 693s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 693s > plot(ls, add = TRUE, col = "red") 693s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 693s > plot(ls, add = TRUE, col = "red") 693s > # add lines to existing 0 values, summing values in case of multiple lines: 693s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 693s stars object with 2 dimensions and 1 attribute 693s attribute(s): 693s Min. 1st Qu. Median Mean 3rd Qu. Max. 693s values 0 0 0 0 0 0 693s dimension(s): 693s from to offset delta x/y 693s x 1 10 0 0.1 [x] 693s y 1 10 1 -0.1 [y] 693s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 693s > plot(r, axes = TRUE, reset = FALSE) 693s > plot(ls, add = TRUE, col = "red") 693s > 693s BEGIN TEST rectilinear.R 694s 694s R version 4.3.2 (2023-10-31) -- "Eye Holes" 694s Copyright (C) 2023 The R Foundation for Statistical Computing 694s Platform: aarch64-unknown-linux-gnu (64-bit) 694s 694s R is free software and comes with ABSOLUTELY NO WARRANTY. 694s You are welcome to redistribute it under certain conditions. 694s Type 'license()' or 'licence()' for distribution details. 694s 694s R is a collaborative project with many contributors. 694s Type 'contributors()' for more information and 694s 'citation()' on how to cite R or R packages in publications. 694s 694s Type 'demo()' for some demos, 'help()' for on-line help, or 694s 'help.start()' for an HTML browser interface to help. 694s Type 'q()' to quit R. 694s 694s > suppressPackageStartupMessages(library(stars)) 697s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 697s > x = read_stars(tif) 697s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 697s stars object with 3 dimensions and 1 attribute 697s attribute(s): 697s Min. 1st Qu. Median Mean 3rd Qu. Max. 697s L7_ETMs.tif 1 54 69 68.9915 86 255 697s dimension(s): 698s from to refsys point 698s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 698s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 698s band 1 6 NA NA 698s values x/y 698s x [288790.5,288819),...,[298708.5,298737) [x] 698s y [9120747,9120718),...,[9110743,9110715) [y] 698s band NULL 698s > image(xx) # chooses useRaster itself 698s > # see also tidy.R for a ggplot example, leaving out the row. 698s > 698s > m = matrix(1:16, 4, 4) 698s > x = 1:4 698s > y = 2:5 698s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 698s stars object with 2 dimensions and 1 attribute 698s attribute(s): 698s Min. 1st Qu. Median Mean 3rd Qu. Max. 698s m 1 4.75 8.5 8.5 12.25 16 698s dimension(s): 698s from to offset delta point x/y 698s x 1 4 1 1 FALSE [x] 698s y 1 4 2 1 FALSE [y] 698s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 698s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 698s > Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 698s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 698s try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 698s > 698s > # $<-.stars: 698s > st$foo = st$m * 2 698s > st 698s stars object with 2 dimensions and 2 attributes 698s attribute(s): 698s Min. 1st Qu. Median Mean 3rd Qu. Max. 698s m 1 4.75 8.5 8.5 12.25 16 698s foo 2 9.50 17.0 17.0 24.50 32 698s dimension(s): 698s from to point values x/y 698s x 1 4 FALSE [1,2),...,[4,6) [x] 698s y 1 4 FALSE [2,3),...,[5,8) [y] 698s > 698s > # st_as_sf: 698s > 698s > if (utils::packageVersion("sf") > "0.7.2") { 698s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 698s + } 699s > 699s > image(st, text_values = TRUE, axes = TRUE) 699s > 699s BEGIN TEST redimension.R 699s 699s R version 4.3.2 (2023-10-31) -- "Eye Holes" 699s Copyright (C) 2023 The R Foundation for Statistical Computing 699s Platform: aarch64-unknown-linux-gnu (64-bit) 699s 699s R is free software and comes with ABSOLUTELY NO WARRANTY. 699s You are welcome to redistribute it under certain conditions. 699s Type 'license()' or 'licence()' for distribution details. 699s 699s R is a collaborative project with many contributors. 699s Type 'contributors()' for more information and 699s 'citation()' on how to cite R or R packages in publications. 699s 699s Type 'demo()' for some demos, 'help()' for on-line help, or 699s 'help.start()' for an HTML browser interface to help. 699s Type 'q()' to quit R. 699s 699s > suppressPackageStartupMessages(library(stars)) 702s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 702s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 702s > (xx = st_redimension(r, along = list(foo = 1:4))) 702s stars_proxy object with 1 attribute in 4 file(s): 702s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 702s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 702s [4] "[...]/L7_ETMs.tif" 702s 702s dimension(s): 703s from to offset delta refsys point x/y 703s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 703s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 703s band 1 6 NA NA NA NA 703s foo 1 4 1 1 NA NA 703s > (rr = c(xx, xx)) 703s stars_proxy object with 2 attributes in 8 file(s): 703s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 703s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [4] "[...]/L7_ETMs.tif" 703s 703s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 703s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [4] "[...]/L7_ETMs.tif" 703s 703s dimension(s): 703s from to offset delta refsys point x/y 703s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 703s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 703s band 1 6 NA NA NA NA 703s foo 1 4 1 1 NA NA 703s > # st_as_stars(rr) 703s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 703s stars_proxy object with 1 attribute in 8 file(s): 703s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 703s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s 703s dimension(s): 703s from to offset delta refsys point x/y 703s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 703s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 703s band 1 6 NA NA NA NA 703s foo 1 4 1 1 NA NA 703s bar 1 2 2001-01-01 365 days Date NA 703s > (rr = c(a = xx, b = xx)) 703s stars_proxy object with 2 attributes in 8 file(s): 703s $a 703s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [4] "[...]/L7_ETMs.tif" 703s 703s $b 703s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [4] "[...]/L7_ETMs.tif" 703s 703s dimension(s): 703s from to offset delta refsys point x/y 703s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 703s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 703s band 1 6 NA NA NA NA 703s foo 1 4 1 1 NA NA 703s > # st_as_stars(rr) 703s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 703s stars_proxy object with 1 attribute in 8 file(s): 703s $a.b 703s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 703s 703s dimension(s): 703s from to offset delta refsys point x/y 703s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 703s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 703s band 1 6 NA NA NA NA 703s foo 1 4 1 1 NA NA 703s bar 1 2 2001-01-01 365 days Date NA 703s > 703s BEGIN TEST sf.R 704s 704s R version 4.3.2 (2023-10-31) -- "Eye Holes" 704s Copyright (C) 2023 The R Foundation for Statistical Computing 704s Platform: aarch64-unknown-linux-gnu (64-bit) 704s 704s R is free software and comes with ABSOLUTELY NO WARRANTY. 704s You are welcome to redistribute it under certain conditions. 704s Type 'license()' or 'licence()' for distribution details. 704s 704s R is a collaborative project with many contributors. 704s Type 'contributors()' for more information and 704s 'citation()' on how to cite R or R packages in publications. 704s 704s Type 'demo()' for some demos, 'help()' for on-line help, or 704s 'help.start()' for an HTML browser interface to help. 704s Type 'q()' to quit R. 704s 704s > suppressPackageStartupMessages(library(stars)) 707s > library(sf) 707s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 707s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 707s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 707s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 707s > (x = read_stars(tif)[,1:20,1:20]) 707s stars object with 3 dimensions and 1 attribute 707s attribute(s): 707s Min. 1st Qu. Median Mean 3rd Qu. Max. 707s L7_ETMs.tif 17 44 58 58.19667 70 130 707s dimension(s): 707s from to offset delta refsys point x/y 707s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 707s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 707s band 1 6 NA NA NA NA 707s > # names(x) = "L7_ETM" 707s > 707s > # library(abind) 707s > # x = adrop(x) 707s > image(x) 708s > (sfc = st_as_sfc(x, as_points = FALSE)) 708s Geometry set for 400 features 708s Geometry type: POLYGON 708s Dimension: XY 708s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 708s Projected CRS: SIRGAS 2000 / UTM zone 25S 708s First 5 geometries: 708s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 708s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 708s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 708s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 708s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 708s > plot(sfc, add =TRUE) 708s > (sfc = st_as_sfc(x, as_points = TRUE)) 708s Geometry set for 400 features 708s Geometry type: POINT 708s Dimension: XY 708s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 708s Projected CRS: SIRGAS 2000 / UTM zone 25S 708s First 5 geometries: 708s POINT (288790.5 9120747) 708s POINT (288819 9120747) 708s POINT (288847.5 9120747) 708s POINT (288876 9120747) 708s POINT (288904.5 9120747) 708s > plot(sfc, add = TRUE) 708s > 708s > sf = st_as_sf(x, as_points = FALSE) 708s > plot(sf, border = NA) 709s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 709s > plot(sf, border = NA) 709s > 709s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 709s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 709s > identical(sfc1, sfc2) 709s [1] TRUE 709s > 709s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 709s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 709s > identical(sfc1, sfc2) 709s [1] TRUE 709s > 709s > # sf -> stars -> sf 709s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 709s > m = matrix(1:9,3) 709s > colnames(m) = c("a", "b", "c") 709s > foo = st_sf(m, geom = x) 709s > x = st_as_stars(foo) 709s > c(x) 709s stars object with 1 dimensions and 3 attributes 709s attribute(s): 709s Min. 1st Qu. Median Mean 3rd Qu. Max. 709s a 1 1.5 2 2 2.5 3 709s b 4 4.5 5 5 5.5 6 709s c 7 7.5 8 8 8.5 9 709s dimension(s): 709s from to point values 709s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 709s > st_redimension(x) 709s stars object with 2 dimensions and 1 attribute 709s attribute(s): 709s Min. 1st Qu. Median Mean 3rd Qu. Max. 709s a.b.c 1 3 5 5 7 9 709s dimension(s): 709s from to point values 709s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 709s new_dim 1 3 NA a, b, c 709s > c(x, x) 709s stars object with 1 dimensions and 6 attributes 709s attribute(s): 709s Min. 1st Qu. Median Mean 3rd Qu. Max. 709s a 1 1.5 2 2 2.5 3 709s b 4 4.5 5 5 5.5 6 709s c 7 7.5 8 8 8.5 9 709s a.1 1 1.5 2 2 2.5 3 709s b.1 4 4.5 5 5 5.5 6 709s c.1 7 7.5 8 8 8.5 9 709s dimension(s): 709s from to point values 709s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 709s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 709s stars object with 2 dimensions and 1 attribute 709s attribute(s): 709s Min. 1st Qu. Median Mean 3rd Qu. Max. 709s a.b.c 1 3 5 5 7 9 709s dimension(s): 709s from to offset delta refsys point values 709s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 709s time 1 3 2017-11-27 1 days Date NA NULL 709s > st_as_sf(y) 709s Simple feature collection with 3 features and 3 fields 709s Geometry type: POINT 709s Dimension: XY 709s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 709s CRS: NA 709s 2017-11-27 2017-11-28 2017-11-29 geom 709s 1 1 4 7 POINT (0 1) 709s 2 2 5 8 POINT (1 2) 709s 3 3 6 9 POINT (2 3) 709s > st_as_sf(st_as_stars(foo)) 709s Simple feature collection with 3 features and 3 fields 709s Geometry type: POINT 709s Dimension: XY 709s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 709s CRS: NA 709s a b c geom 709s 1 1 4 7 POINT (0 1) 709s 2 2 5 8 POINT (1 2) 709s 3 3 6 9 POINT (2 3) 709s > 709s > c(x,x,along=1) # NEEDS FIXING! 709s stars object with 1 dimensions and 3 attributes 709s attribute(s): 709s Min. 1st Qu. Median Mean 3rd Qu. Max. 709s a 1 1.25 2 2 2.75 3 709s b 4 4.25 5 5 5.75 6 709s c 7 7.25 8 8 8.75 9 709s dimension(s): 709s from to point values 709s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 709s > # st_as_stars.sfc 709s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 709s stars object with 2 dimensions and 1 attribute 709s attribute(s): 709s Min. 1st Qu. Median Mean 3rd Qu. Max. 709s values 0 0 0 0.06 0 1 709s dimension(s): 709s from to offset delta x/y 709s x 1 10 0 0.2 [x] 709s y 1 10 3 -0.2 [y] 709s > 709s BEGIN TEST sp.R 710s 710s R version 4.3.2 (2023-10-31) -- "Eye Holes" 710s Copyright (C) 2023 The R Foundation for Statistical Computing 710s Platform: aarch64-unknown-linux-gnu (64-bit) 710s 710s R is free software and comes with ABSOLUTELY NO WARRANTY. 710s You are welcome to redistribute it under certain conditions. 710s Type 'license()' or 'licence()' for distribution details. 710s 710s R is a collaborative project with many contributors. 710s Type 'contributors()' for more information and 710s 'citation()' on how to cite R or R packages in publications. 710s 710s Type 'demo()' for some demos, 'help()' for on-line help, or 710s 'help.start()' for an HTML browser interface to help. 710s Type 'q()' to quit R. 710s 710s > options(rgdal_show_exportToProj4_warnings = "none") 710s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 710s + demo(meuse) 710s + # remove +init=xxx 710s + meuse@proj4string = CRS( 710s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 710s + ) 710s + meuse.grid@proj4string = CRS( 710s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 710s + ) 710s + 710s + suppressPackageStartupMessages(library(stars)) 710s + (m = st_as_stars(meuse)) 710s + (gr = st_as_stars(meuse.grid)) 710s + 710s + m2 = as(m, "Spatial") 710s + summary(m2) 710s + gr2 = as(gr, "Spatial") 710s + summary(gr2) 710s + 710s + all.equal(meuse, m2, check.attributes = FALSE) 710s + fullgrid(meuse.grid) = TRUE 710s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 710s + 710s + #all.equal(meuse, m2) 710s + #all.equal(meuse.grid, gr2) 710s + } 711s 711s 711s demo(meuse) 711s ---- ~~~~~ 711s 711s > require(sp) 711s 711s > crs = CRS("EPSG:28992") 714s 714s > data("meuse") 714s 714s > coordinates(meuse) <- ~x+y 714s 714s > proj4string(meuse) <- crs 714s 714s > data("meuse.grid") 714s 714s > coordinates(meuse.grid) <- ~x+y 714s 714s > gridded(meuse.grid) <- TRUE 714s 714s > proj4string(meuse.grid) <- crs 714s 714s > data("meuse.riv") 714s 714s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 714s 714s > proj4string(meuse.riv) <- crs 714s 714s > data("meuse.area") 714s 714s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 714s 714s > proj4string(meuse.area) <- crs 715s [1] TRUE 715s > 715s BEGIN TEST spacetime.R 715s 715s R version 4.3.2 (2023-10-31) -- "Eye Holes" 715s Copyright (C) 2023 The R Foundation for Statistical Computing 715s Platform: aarch64-unknown-linux-gnu (64-bit) 715s 715s R is free software and comes with ABSOLUTELY NO WARRANTY. 715s You are welcome to redistribute it under certain conditions. 715s Type 'license()' or 'licence()' for distribution details. 715s 715s R is a collaborative project with many contributors. 715s Type 'contributors()' for more information and 715s 'citation()' on how to cite R or R packages in publications. 715s 715s Type 'demo()' for some demos, 'help()' for on-line help, or 715s 'help.start()' for an HTML browser interface to help. 715s Type 'q()' to quit R. 715s 716s > suppressPackageStartupMessages(library(stars)) 718s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 718s + set.seed(1331) 718s + Sys.setenv(TZ="UTC") 718s + example(STFDF) 718s + 718s + x = st_as_stars(stfdf) 718s + xx = as(x, "STFDF") 718s + 718s + # as.xts.stars: 718s + library(xts) 718s + xts = as.xts(x) 718s + st_as_stars(xts) 718s + st_as_stars(xts, dimensions = st_dimensions(x)) 718s + 718s + library(sp) 718s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 718s + gridded(pts) = TRUE 718s + 718s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 718s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 718s + x = st_as_stars(stfdf) 718s + xx = as(x, "STFDF") 718s + 718s + x = st_as_stars(as(stfdf, "STSDF")) 718s + } 720s 720s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 720s 720s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 720s 720s STFDF> library(sp) 720s 720s STFDF> sp = SpatialPoints(sp) 721s 721s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 721s 721s STFDF> m = c(10,20,30) # means for each of the 3 point locations 721s 721s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 721s 721s STFDF> IDs = paste("ID",1:length(mydata)) 721s 721s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 721s 721s STFDF> stfdf = STFDF(sp, time, mydata) 721s 721s STFDF> stfdf 721s An object of class "STFDF" 721s Slot "data": 721s values ID 721s 1 9.38 ID 1 721s 2 21.10 ID 2 721s 3 29.80 ID 3 721s 4 11.50 ID 4 721s 5 19.80 ID 5 721s 6 31.20 ID 6 721s 7 10.40 ID 7 721s 8 20.50 ID 8 721s 9 29.80 ID 9 721s 10 10.30 ID 10 721s 11 21.40 ID 11 721s 12 29.40 ID 12 721s 721s Slot "sp": 721s SpatialPoints: 721s x y 721s point1 0 0 721s point2 0 1 721s point3 1 1 721s Coordinate Reference System (CRS) arguments: NA 721s 721s Slot "time": 721s timeIndex 721s 2010-08-05 10:00:00 1 721s 2010-08-05 11:00:00 2 721s 2010-08-05 12:00:00 3 721s 2010-08-05 13:00:00 4 721s 721s Slot "endTime": 721s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 721s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 721s 721s 721s STFDF> stfdf[1:2,] 721s An object of class "STFDF" 721s Slot "data": 721s values ID 721s 1 9.38 ID 1 721s 2 21.10 ID 2 721s 3 11.50 ID 4 721s 4 19.80 ID 5 721s 5 10.40 ID 7 721s 6 20.50 ID 8 721s 7 10.30 ID 10 721s 8 21.40 ID 11 721s 721s Slot "sp": 721s SpatialPoints: 721s x y 721s point1 0 0 721s point2 0 1 721s Coordinate Reference System (CRS) arguments: NA 721s 721s Slot "time": 721s timeIndex 721s 2010-08-05 10:00:00 1 721s 2010-08-05 11:00:00 2 721s 2010-08-05 12:00:00 3 721s 2010-08-05 13:00:00 4 721s 721s Slot "endTime": 721s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 721s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 721s 721s 721s STFDF> stfdf[,1:2] 721s An object of class "STFDF" 721s Slot "data": 721s values ID 721s 1 9.38 ID 1 721s 2 21.10 ID 2 721s 3 29.80 ID 3 721s 4 11.50 ID 4 721s 5 19.80 ID 5 721s 6 31.20 ID 6 721s 721s Slot "sp": 721s SpatialPoints: 721s x y 721s point1 0 0 721s point2 0 1 721s point3 1 1 721s Coordinate Reference System (CRS) arguments: NA 721s 721s Slot "time": 721s timeIndex 721s 2010-08-05 10:00:00 1 721s 2010-08-05 11:00:00 2 721s 721s Slot "endTime": 721s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 721s 721s 721s STFDF> stfdf[,,2] 721s An object of class "STFDF" 721s Slot "data": 721s ID 721s 1 ID 1 721s 2 ID 2 721s 3 ID 3 721s 4 ID 4 721s 5 ID 5 721s 6 ID 6 721s 7 ID 7 721s 8 ID 8 721s 9 ID 9 721s 10 ID 10 721s 11 ID 11 721s 12 ID 12 721s 721s Slot "sp": 721s SpatialPoints: 721s x y 721s point1 0 0 721s point2 0 1 721s point3 1 1 721s Coordinate Reference System (CRS) arguments: NA 721s 721s Slot "time": 721s timeIndex 721s 2010-08-05 10:00:00 1 721s 2010-08-05 11:00:00 2 721s 2010-08-05 12:00:00 3 721s 2010-08-05 13:00:00 4 721s 721s Slot "endTime": 721s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 721s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 721s 721s 721s STFDF> stfdf[,,"values"] 721s An object of class "STFDF" 721s Slot "data": 721s values 721s 1 9.38 721s 2 21.10 721s 3 29.80 721s 4 11.50 721s 5 19.80 721s 6 31.20 721s 7 10.40 721s 8 20.50 721s 9 29.80 721s 10 10.30 721s 11 21.40 721s 12 29.40 721s 721s Slot "sp": 721s SpatialPoints: 721s x y 721s point1 0 0 721s point2 0 1 721s point3 1 1 721s Coordinate Reference System (CRS) arguments: NA 721s 721s Slot "time": 721s timeIndex 721s 2010-08-05 10:00:00 1 721s 2010-08-05 11:00:00 2 721s 2010-08-05 12:00:00 3 721s 2010-08-05 13:00:00 4 721s 721s Slot "endTime": 721s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 721s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 721s 721s 721s STFDF> stfdf[1,] 721s values ID timeIndex 721s 2010-08-05 10:00:00 9.38 ID 1 1 721s 2010-08-05 11:00:00 11.50 ID 4 2 721s 2010-08-05 12:00:00 10.40 ID 7 3 721s 2010-08-05 13:00:00 10.30 ID 10 4 721s 721s STFDF> stfdf[,2] 721s coordinates values ID 721s 1 (0, 0) 11.5 ID 4 721s 2 (0, 1) 19.8 ID 5 721s 3 (1, 1) 31.2 ID 6 721s 721s STFDF> as(stfdf[,,1], "xts") 721s point1 point2 point3 721s 2010-08-05 10:00:00 9.38 21.1 29.8 721s 2010-08-05 11:00:00 11.50 19.8 31.2 721s 2010-08-05 12:00:00 10.40 20.5 29.8 721s 2010-08-05 13:00:00 10.30 21.4 29.4 721s 721s STFDF> as(stfdf[,,2], "xts") 721s point1 point2 point3 721s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 721s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 721s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 721s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 721s 721s STFDF> # examples for [[, [[<-, $ and $<- 721s STFDF> stfdf[[1]] 721s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 721s 721s STFDF> stfdf[["values"]] 721s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 721s 721s STFDF> stfdf[["newVal"]] <- rnorm(12) 721s 721s STFDF> stfdf$ID 721s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 721s [10] "ID 10" "ID 11" "ID 12" 721s 721s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 721s 721s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 721s 721s STFDF> stfdf 721s An object of class "STFDF" 721s Slot "data": 721s values ID newVal NewID 721s 1 9.38 OldIDs1 -0.3125824 NewIDs12 721s 2 21.10 OldIDs2 -1.0536246 NewIDs11 721s 3 29.80 OldIDs3 -0.7188880 NewIDs10 721s 4 11.50 OldIDs4 -1.0525404 NewIDs9 721s 5 19.80 OldIDs5 -0.8441413 NewIDs8 721s 6 31.20 OldIDs6 1.1420848 NewIDs7 721s 7 10.40 OldIDs7 1.9479070 NewIDs6 721s 8 20.50 OldIDs8 -0.4512836 NewIDs5 721s 9 29.80 OldIDs9 0.6695716 NewIDs4 721s 10 10.30 OldIDs10 0.1269003 NewIDs3 721s 11 21.40 OldIDs11 -0.7273297 NewIDs2 721s 12 29.40 OldIDs12 -0.8151803 NewIDs1 721s 721s Slot "sp": 721s SpatialPoints: 721s x y 721s point1 0 0 721s point2 0 1 721s point3 1 1 721s Coordinate Reference System (CRS) arguments: NA 721s 721s Slot "time": 721s timeIndex 721s 2010-08-05 10:00:00 1 721s 2010-08-05 11:00:00 2 721s 2010-08-05 12:00:00 3 721s 2010-08-05 13:00:00 4 721s 721s Slot "endTime": 721s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 721s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 721s 721s 721s STFDF> x = stfdf[stfdf[1:2,],] 721s 721s STFDF> all.equal(x, stfdf[1:2,]) 721s [1] TRUE 721s 721s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 721s [1] TRUE 721s Loading required package: zoo 721s 721s Attaching package: 'zoo' 721s 721s The following objects are masked from 'package:base': 721s 721s as.Date, as.Date.numeric 721s 721s only the first attribute will used; maybe use merge() first? 722s > 722s BEGIN TEST spatstat.R 722s 722s R version 4.3.2 (2023-10-31) -- "Eye Holes" 722s Copyright (C) 2023 The R Foundation for Statistical Computing 722s Platform: aarch64-unknown-linux-gnu (64-bit) 722s 722s R is free software and comes with ABSOLUTELY NO WARRANTY. 722s You are welcome to redistribute it under certain conditions. 722s Type 'license()' or 'licence()' for distribution details. 722s 722s R is a collaborative project with many contributors. 722s Type 'contributors()' for more information and 722s 'citation()' on how to cite R or R packages in publications. 722s 722s Type 'demo()' for some demos, 'help()' for on-line help, or 722s 'help.start()' for an HTML browser interface to help. 722s Type 'q()' to quit R. 722s 723s > suppressPackageStartupMessages(library(sf)) 726s > 726s > library(stars) 726s Loading required package: abind 726s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 726s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 726s + s = adrop(read_stars(tif)[,,,1]) > 70 726s + plot(s) 726s + m = as.owin(s) 726s + plot(m) 726s + print(table(m$m)) 726s + } 731s 731s FALSE TRUE 731s 39494 83354 731s > 731s BEGIN TEST stars.R 731s 731s R version 4.3.2 (2023-10-31) -- "Eye Holes" 731s Copyright (C) 2023 The R Foundation for Statistical Computing 731s Platform: aarch64-unknown-linux-gnu (64-bit) 731s 731s R is free software and comes with ABSOLUTELY NO WARRANTY. 731s You are welcome to redistribute it under certain conditions. 731s Type 'license()' or 'licence()' for distribution details. 731s 731s R is a collaborative project with many contributors. 731s Type 'contributors()' for more information and 731s 'citation()' on how to cite R or R packages in publications. 731s 731s Type 'demo()' for some demos, 'help()' for on-line help, or 731s 'help.start()' for an HTML browser interface to help. 731s Type 'q()' to quit R. 731s 732s > Sys.setenv(TZ="UTC") 732s > suppressPackageStartupMessages(library(stars)) 735s > set.seed(13521) # runif 735s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 735s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 735s stars object with 3 dimensions and 2 attributes 735s attribute(s): 736s Min. 1st Qu. Median Mean 3rd Qu. Max. 736s L7_ETMs.tif 1 54 69 68.91242 86 255 736s L7_ETMs.tif.1 1 54 69 68.91242 86 255 736s dimension(s): 736s from to offset delta refsys point x/y 736s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 736s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 736s band 1 6 NA NA NA NA 736s > (x = read_stars(tif)) 736s stars object with 3 dimensions and 1 attribute 736s attribute(s): 736s Min. 1st Qu. Median Mean 3rd Qu. Max. 736s L7_ETMs.tif 1 54 69 68.91242 86 255 736s dimension(s): 736s from to offset delta refsys point x/y 736s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 736s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 736s band 1 6 NA NA NA NA 736s > # image(x) 736s > gdal_crs(tif) 736s Coordinate Reference System: 736s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 736s wkt: 736s PROJCRS["SIRGAS 2000 / UTM zone 25S", 736s BASEGEOGCRS["SIRGAS 2000", 736s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 736s ELLIPSOID["GRS 1980",6378137,298.257222101, 736s LENGTHUNIT["metre",1]]], 736s PRIMEM["Greenwich",0, 736s ANGLEUNIT["degree",0.0174532925199433]], 736s ID["EPSG",4674]], 736s CONVERSION["UTM zone 25S", 736s METHOD["Transverse Mercator", 736s ID["EPSG",9807]], 736s PARAMETER["Latitude of natural origin",0, 736s ANGLEUNIT["degree",0.0174532925199433], 736s ID["EPSG",8801]], 736s PARAMETER["Longitude of natural origin",-33, 736s ANGLEUNIT["degree",0.0174532925199433], 736s ID["EPSG",8802]], 736s PARAMETER["Scale factor at natural origin",0.9996, 736s SCALEUNIT["unity",1], 736s ID["EPSG",8805]], 736s PARAMETER["False easting",500000, 736s LENGTHUNIT["metre",1], 736s ID["EPSG",8806]], 736s PARAMETER["False northing",10000000, 736s LENGTHUNIT["metre",1], 736s ID["EPSG",8807]]], 736s CS[Cartesian,2], 736s AXIS["easting",east, 736s ORDER[1], 736s LENGTHUNIT["metre",1]], 736s AXIS["northing",north, 736s ORDER[2], 736s LENGTHUNIT["metre",1]], 736s ID["EPSG",31985]] 736s > plot(x) 738s > plot(x, join_zlim = FALSE) 739s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 739s stars object with 3 dimensions and 1 attribute 739s attribute(s): 739s Min. 1st Qu. Median Mean 3rd Qu. Max. 739s L7_ETMs.tif 1 54 69 68.91242 86 255 739s dimension(s): 739s from to offset delta refsys point x/y 739s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 739s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 739s c 1 6 NA NA NA NA 739s > st_get_dimension_values(x, 3) 739s [1] 1 2 3 4 5 6 739s > 739s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 739s stars object with 3 dimensions and 1 attribute 739s attribute(s): 739s Min. 1st Qu. Median Mean 3rd Qu. Max. 739s L7_ETMs.tif 1 54 69 68.91242 86 255 739s dimension(s): 740s from to offset delta refsys point values x/y 740s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 740s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 740s band_number 1 6 NA NA NA TRUE 1,...,7 740s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 740s + units::set_units(um) -> bw # units::set_units(µm) -> bw 740s > # set bandwidth midpoint: 740s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 740s + names = "bandwidth_midpoint", point = TRUE)) 740s stars object with 3 dimensions and 1 attribute 740s attribute(s): 740s Min. 1st Qu. Median Mean 3rd Qu. Max. 740s L7_ETMs.tif 1 54 69 68.91242 86 255 740s dimension(s): 740s from to offset delta refsys point 740s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 740s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 740s bandwidth_midpoint 1 6 NA NA udunits TRUE 740s values x/y 740s x NULL [x] 740s y NULL [y] 740s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 740s > # set bandwidth intervals: 740s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 740s stars object with 3 dimensions and 1 attribute 740s attribute(s): 740s Min. 1st Qu. Median Mean 3rd Qu. Max. 740s L7_ETMs.tif 1 54 69 68.91242 86 255 740s dimension(s): 740s from to offset delta refsys point 740s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 740s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 740s bandwidth 1 6 NA NA udunits NA 740s values x/y 740s x NULL [x] 740s y NULL [y] 740s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 740s > 740s > x + x 740s stars object with 3 dimensions and 1 attribute 740s attribute(s): 741s Min. 1st Qu. Median Mean 3rd Qu. Max. 741s L7_ETMs.tif 2 108 138 137.8248 172 510 741s dimension(s): 741s from to offset delta refsys point x/y 741s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 741s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 741s band 1 6 NA NA NA NA 741s > x * x 741s stars object with 3 dimensions and 1 attribute 741s attribute(s): 741s Min. 1st Qu. Median Mean 3rd Qu. Max. 741s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 741s dimension(s): 741s from to offset delta refsys point x/y 741s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 741s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 741s band 1 6 NA NA NA NA 741s > x[,,,1:3] 741s stars object with 3 dimensions and 1 attribute 741s attribute(s): 741s Min. 1st Qu. Median Mean 3rd Qu. Max. 741s L7_ETMs.tif 21 58 70 70.36041 83 255 741s dimension(s): 742s from to offset delta refsys point x/y 742s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 742s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 742s band 1 3 NA NA NA NA 742s > x[,1:100,100:200,] 742s stars object with 3 dimensions and 1 attribute 742s attribute(s): 742s Min. 1st Qu. Median Mean 3rd Qu. Max. 742s L7_ETMs.tif 13 54 65 67.21531 77 252 742s dimension(s): 742s from to offset delta refsys point x/y 742s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 742s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 742s band 1 6 NA NA NA NA 742s > sqrt(x) 742s stars object with 3 dimensions and 1 attribute 742s attribute(s): 742s Min. 1st Qu. Median Mean 3rd Qu. Max. 742s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 742s dimension(s): 742s from to offset delta refsys point x/y 742s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 742s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 742s band 1 6 NA NA NA NA 742s > st_apply(x, 3, min) 742s stars object with 1 dimensions and 1 attribute 742s attribute(s): 742s Min. 1st Qu. Median Mean 3rd Qu. Max. 742s min 1 3 15 18.5 29.25 47 742s dimension(s): 742s from to 742s band 1 6 742s > st_apply(x, 1:2, max) 743s stars object with 2 dimensions and 1 attribute 743s attribute(s): 743s Min. 1st Qu. Median Mean 3rd Qu. Max. 743s max 55 85 96 99.36018 113 255 743s dimension(s): 744s from to offset delta refsys point x/y 744s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 744s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 744s > st_apply(x, 1:2, range) 746s stars object with 3 dimensions and 1 attribute 746s attribute(s): 746s Min. 1st Qu. Median Mean 3rd Qu. Max. 746s L7_ETMs.tif 1 50 71 72.43565 96 255 746s dimension(s): 747s from to offset delta refsys point x/y 747s range 1 2 NA NA NA NA 747s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 747s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 747s > 747s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 747s > x = read_stars(geomatrix) 747s > y = st_transform(x, st_crs(4326)) 747s > st_coordinates(x)[1:10,] 747s x y 747s 1 1841000 1144000 747s 2 1841002 1143995 747s 3 1841003 1143990 747s 4 1841004 1143985 747s 5 1841006 1143980 747s 6 1841008 1143975 747s 7 1841009 1143970 747s 8 1841010 1143965 747s 9 1841012 1143960 747s 10 1841014 1143955 747s > 747s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 747s > if (nc != "" && require(PCICt, quietly = TRUE)) { 747s + print(x <- read_stars(nc)) 747s + print(st_bbox(x)) 747s + s = st_as_stars(st_bbox(x)) # inside = NA 747s + print(st_bbox(s)) 747s + s = st_as_stars(st_bbox(x), inside = TRUE) 747s + print(st_bbox(s)) 747s + s = st_as_stars(st_bbox(x), inside = FALSE) 747s + print(st_bbox(s)) 747s + (s = st_as_stars(st_bbox(x), dy = 1)) 747s + print(st_bbox(s)) 747s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 747s + s = st_as_stars(st_bbox(x), dx = 10) 747s + print(st_bbox(s)) 747s + s = st_as_stars(st_bbox(x), dx = 20) 747s + print(st_bbox(s)) 747s + x1 = x 747s + st_crs(x1) = "OGC:CRS84" 747s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 747s + 747s + df = as.data.frame(x) 747s + if (require(units, quietly = TRUE)) 747s + print(units::drop_units(x)) 747s + 747s + print(dimnames(x)) 747s + dimnames(x) <- letters[1:3] 747s + print(dimnames(x)) 747s + } # PCICt 747s > 747s > st_as_stars() 747s stars object with 2 dimensions and 1 attribute 747s attribute(s): 747s Min. 1st Qu. Median Mean 3rd Qu. Max. 747s values 0 0 0 0 0 0 747s dimension(s): 747s from to offset delta refsys x/y 747s x 1 360 -180 1 WGS 84 (CRS84) [x] 747s y 1 180 90 -1 WGS 84 (CRS84) [y] 747s > 747s > # multiple sub-datasets: 747s > nc_red = system.file("nc/reduced.nc", package = "stars") 747s > red = read_stars(nc_red) 747s sst, anom, err, ice, 747s > red 747s stars object with 4 dimensions and 4 attributes 747s attribute(s): 747s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 747s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 747s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 747s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 747s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 747s dimension(s): 747s from to offset delta refsys x/y 747s x 1 180 -1 2 NA [x] 747s y 1 90 90 -2 NA [y] 747s zlev 1 1 0 [m] NA NA 747s time 1 1 1981-12-31 UTC NA POSIXct 747s > plot(red) 747s > 747s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 747s > st_bbox(x) 747s xmin ymin xmax ymax 747s 288776.3 9120475.8 289061.3 9120760.8 747s > x = read_stars(tif) 747s > merge(split(x, "band")) 749s stars object with 3 dimensions and 1 attribute 749s attribute(s): 750s Min. 1st Qu. Median Mean 3rd Qu. Max. 750s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 750s dimension(s): 750s from to offset delta refsys point values 750s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 750s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 750s attributes 1 6 NA NA NA NA X1,...,X6 750s x/y 750s x [x] 750s y [y] 750s attributes 750s > 750s > read_stars(c(tif,tif)) # merges as attributes 750s stars object with 3 dimensions and 2 attributes 750s attribute(s): 751s Min. 1st Qu. Median Mean 3rd Qu. Max. 751s L7_ETMs.tif 1 54 69 68.91242 86 255 751s L7_ETMs.tif.1 1 54 69 68.91242 86 255 751s dimension(s): 751s from to offset delta refsys point x/y 751s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 751s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 751s band 1 6 NA NA NA NA 751s > read_stars(c(tif,tif), along = "sensor") 752s stars object with 4 dimensions and 1 attribute 752s attribute(s), summary of first 1e+05 cells: 752s Min. 1st Qu. Median Mean 3rd Qu. Max. 752s L7_ETMs.tif 47 65 76 77.3419 87 255 752s dimension(s): 752s from to offset delta refsys point x/y 752s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 752s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 752s band 1 6 NA NA NA NA 752s sensor 1 2 NA NA NA NA 752s > read_stars(c(tif,tif), along = 4) 752s stars object with 4 dimensions and 1 attribute 752s attribute(s), summary of first 1e+05 cells: 752s Min. 1st Qu. Median Mean 3rd Qu. Max. 752s L7_ETMs.tif 47 65 76 77.3419 87 255 752s dimension(s): 752s from to offset delta refsys point x/y 752s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 752s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 752s band 1 6 NA NA NA NA 752s new_dim 1 2 NA NA NA NA 752s > read_stars(c(tif,tif), along = "band") 752s stars object with 3 dimensions and 1 attribute 752s attribute(s), summary of first 1e+05 cells: 752s Min. 1st Qu. Median Mean 3rd Qu. Max. 752s L7_ETMs.tif 47 65 76 77.3419 87 255 752s dimension(s): 752s from to offset delta refsys point x/y 752s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 752s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 752s band 1 12 NA NA NA NA 752s > read_stars(c(tif,tif), along = 3) 753s stars object with 3 dimensions and 1 attribute 753s attribute(s), summary of first 1e+05 cells: 753s Min. 1st Qu. Median Mean 3rd Qu. Max. 753s L7_ETMs.tif 47 65 76 77.3419 87 255 753s dimension(s): 753s from to offset delta refsys point x/y 753s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 753s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 753s band 1 12 NA NA NA NA 753s > 753s > # cut: 753s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 753s > x = read_stars(tif) 753s > cut(x, c(0, 50, 100, 255)) 753s stars object with 3 dimensions and 1 attribute 753s attribute(s): 753s L7_ETMs.tif 753s (0,50] :156060 753s (50,100] :503764 753s (100,255]: 77264 753s dimension(s): 753s from to offset delta refsys point x/y 753s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 753s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 753s band 1 6 NA NA NA NA 753s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 753s stars object with 2 dimensions and 1 attribute 753s attribute(s): 753s L7_ETMs.tif 753s (0,50] : 1 753s (50,100] :117134 753s (100,255]: 5713 753s dimension(s): 754s from to offset delta refsys point x/y 754s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 754s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 754s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 754s > 754s > st_bbox(st_dimensions(x)) 754s xmin ymin xmax ymax 754s 288776.3 9110728.8 298722.8 9120760.8 754s > x[x < 0] = NA 754s > x[is.na(x)] = 0 754s > 754s > # c: 754s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 754s > if (FALSE && f != "") { 754s + files = c("avhrr-only-v2.19810901.nc", 754s + "avhrr-only-v2.19810902.nc", 754s + "avhrr-only-v2.19810903.nc", 754s + "avhrr-only-v2.19810904.nc", 754s + "avhrr-only-v2.19810905.nc", 754s + "avhrr-only-v2.19810906.nc", 754s + "avhrr-only-v2.19810907.nc", 754s + "avhrr-only-v2.19810908.nc", 754s + "avhrr-only-v2.19810909.nc") 754s + l = list() 754s + for (f in files) { 754s + from = system.file(paste0("netcdf/", f), package = "starsdata") 754s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 754s + } 754s + ret = do.call(c, l) 754s + print(ret) 754s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 754s + print(ret) 754s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 754s + #print(ret) 754s + } 754s > 754s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 754s from to point values 754s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 754s > 754s > if (FALSE && require("starsdata", quietly = TRUE)) { 754s + # curvilinear: 754s + s5p = system.file( 754s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 754s + package = "starsdata") 754s + print(s5p) 754s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 754s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 754s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 754s + lat = read_stars(lat_ds) 754s + lon = read_stars(lon_ds) 754s + nit = read_stars(nit_ds) 754s + nit[[1]][nit[[1]] > 9e+36] = NA 754s + 754s + ll = setNames(c(lon, lat), c("x", "y")) 754s + nit.c = st_as_stars(nit, curvilinear = ll) 754s + print(nit.c) 754s + 754s + s5p = system.file( 754s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 754s + package = "starsdata") 754s + nit.c2 = read_stars(s5p, 754s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 754s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 754s + print(all.equal(nit.c, nit.c2)) 754s + } 754s > 754s BEGIN TEST subset.R 754s 754s R version 4.3.2 (2023-10-31) -- "Eye Holes" 754s Copyright (C) 2023 The R Foundation for Statistical Computing 754s Platform: aarch64-unknown-linux-gnu (64-bit) 754s 754s R is free software and comes with ABSOLUTELY NO WARRANTY. 754s You are welcome to redistribute it under certain conditions. 754s Type 'license()' or 'licence()' for distribution details. 754s 754s R is a collaborative project with many contributors. 754s Type 'contributors()' for more information and 754s 'citation()' on how to cite R or R packages in publications. 754s 754s Type 'demo()' for some demos, 'help()' for on-line help, or 754s 'help.start()' for an HTML browser interface to help. 754s Type 'q()' to quit R. 754s 754s > suppressPackageStartupMessages(library(stars)) 758s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 758s > x = read_stars(tif) 758s > y = st_set_dimensions(x, "band", point = TRUE) 758s > y[,1:10, 1:10, c(1,4,3,2)] 758s stars object with 3 dimensions and 1 attribute 758s attribute(s): 758s Min. 1st Qu. Median Mean 3rd Qu. Max. 758s L7_ETMs.tif 25 45 57 56.535 64 97 758s dimension(s): 758s from to offset delta refsys point values x/y 758s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 758s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 758s band 1 4 NA NA NA TRUE 1,...,2 758s > y = st_set_dimensions(x, "band", point = NA) 758s > y[,1:10, 1:10, c(1,4,3,2)] 758s stars object with 3 dimensions and 1 attribute 758s attribute(s): 758s Min. 1st Qu. Median Mean 3rd Qu. Max. 758s L7_ETMs.tif 25 45 57 56.535 64 97 758s dimension(s): 758s from to offset delta refsys point values x/y 758s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 758s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 758s band 1 4 NA NA NA NA [1,2),...,[2,3) 758s > y = st_set_dimensions(x, "band", point = FALSE) 758s > y[,1:10, 1:10, c(1,4,3,2)] 758s stars object with 3 dimensions and 1 attribute 758s attribute(s): 758s Min. 1st Qu. Median Mean 3rd Qu. Max. 758s L7_ETMs.tif 25 45 57 56.535 64 97 758s dimension(s): 759s from to offset delta refsys point values x/y 759s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 759s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 759s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 759s > y = st_set_dimensions(x, "band", values = letters[1:6]) 759s > y[,1:10, 1:10, c(1,4,3,2)] 759s stars object with 3 dimensions and 1 attribute 759s attribute(s): 759s Min. 1st Qu. Median Mean 3rd Qu. Max. 759s L7_ETMs.tif 25 45 57 56.535 64 97 759s dimension(s): 759s from to offset delta refsys point values x/y 759s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 759s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 759s band 1 4 NA NA NA NA a,...,b 759s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 759s > y[,1:10, 1:10, c(1,4,3,2)] 759s stars object with 3 dimensions and 1 attribute 759s attribute(s): 759s Min. 1st Qu. Median Mean 3rd Qu. Max. 759s L7_ETMs.tif 25 45 57 56.535 64 97 759s dimension(s): 759s from to offset delta refsys point values x/y 759s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 759s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 759s band 1 4 NA NA NA NA a,...,b 759s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 759s > y[,1:10, 1:10, c(1,4,3,2)] 759s stars object with 3 dimensions and 1 attribute 759s attribute(s): 759s Min. 1st Qu. Median Mean 3rd Qu. Max. 759s L7_ETMs.tif 25 45 57 56.535 64 97 759s dimension(s): 759s from to offset delta refsys point values x/y 759s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 759s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 759s band 1 4 NA NA NA TRUE a,...,b 759s > 759s BEGIN TEST testthat.R 759s 759s R version 4.3.2 (2023-10-31) -- "Eye Holes" 759s Copyright (C) 2023 The R Foundation for Statistical Computing 759s Platform: aarch64-unknown-linux-gnu (64-bit) 759s 759s R is free software and comes with ABSOLUTELY NO WARRANTY. 759s You are welcome to redistribute it under certain conditions. 759s Type 'license()' or 'licence()' for distribution details. 759s 759s R is a collaborative project with many contributors. 759s Type 'contributors()' for more information and 759s 'citation()' on how to cite R or R packages in publications. 759s 759s Type 'demo()' for some demos, 'help()' for on-line help, or 759s 'help.start()' for an HTML browser interface to help. 759s Type 'q()' to quit R. 759s 760s > ## load dependencies 760s > library(testthat) 760s > suppressPackageStartupMessages(library(stars)) 764s > 764s > ## test package 764s > test_check("stars") 792s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 792s 792s == Skipped tests (5) =========================================================== 792s * On CRAN (4): 'test_ncdf.R:1:1', 'test_ncproxy.R:1:1', 'test_osm.R:4:3', 792s 'test_rectilinear.R:89:3' 792s * cubble cannot be loaded (1): 'test_cubble.R:2:3' 792s 792s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 792s > 792s BEGIN TEST tidy.R 793s 793s R version 4.3.2 (2023-10-31) -- "Eye Holes" 793s Copyright (C) 2023 The R Foundation for Statistical Computing 793s Platform: aarch64-unknown-linux-gnu (64-bit) 793s 793s R is free software and comes with ABSOLUTELY NO WARRANTY. 793s You are welcome to redistribute it under certain conditions. 793s Type 'license()' or 'licence()' for distribution details. 793s 793s R is a collaborative project with many contributors. 793s Type 'contributors()' for more information and 793s 'citation()' on how to cite R or R packages in publications. 793s 793s Type 'demo()' for some demos, 'help()' for on-line help, or 793s 'help.start()' for an HTML browser interface to help. 793s Type 'q()' to quit R. 793s 793s > suppressPackageStartupMessages(library(stars)) 796s > 796s > if (require(dplyr, quietly = TRUE)) { 796s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 796s + x <- read_stars(tif) 796s + (y <- x %>% select(L7_ETMs.tif)) 796s 796s Attaching package: 'dplyr' 796s 796s The following objects are masked from 'package:stats': 796s 796s filter, lag 796s 796s The following objects are masked from 'package:base': 796s 796s intersect, setdiff, setequal, union 796s 796s + (y <- x %>% filter(band > 2)) 796s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 796s + x %>% pull(L7_ETMs.tif) %>% class() 796s + x %>% filter(x > 289900) 796s + x %>% slice("x", 50:100) 796s + 796s + suppressPackageStartupMessages(library(ggplot2)) 796s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 796s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 796s + coord_equal() 796s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 796s + 796s + 796s + # see https://github.com/r-spatial/stars/issues/539 : 796s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 796s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 796s + 796s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 796s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 796s + try(x - slice(y, 'band', 1)) # fails as expected 796s + y - slice(y, 'band', 1) # runs as expected 796s + } 798s Error in Ops.units(X[[i]], ...) : 798s both operands of the expression should be "units" objects 798s Error in Ops.units(X[[i]], ...) : 798s both operands of the expression should be "units" objects 798s stars object with 3 dimensions and 1 attribute 798s attribute(s): 798s Min. 1st Qu. Median Mean 3rd Qu. Max. 798s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 798s dimension(s): 798s from to offset delta refsys point x/y 798s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 798s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 798s band 1 6 NA NA NA NA 798s > 798s BEGIN TEST transform.R 799s 799s R version 4.3.2 (2023-10-31) -- "Eye Holes" 799s Copyright (C) 2023 The R Foundation for Statistical Computing 799s Platform: aarch64-unknown-linux-gnu (64-bit) 799s 799s R is free software and comes with ABSOLUTELY NO WARRANTY. 799s You are welcome to redistribute it under certain conditions. 799s Type 'license()' or 'licence()' for distribution details. 799s 799s R is a collaborative project with many contributors. 799s Type 'contributors()' for more information and 799s 'citation()' on how to cite R or R packages in publications. 799s 799s Type 'demo()' for some demos, 'help()' for on-line help, or 799s 'help.start()' for an HTML browser interface to help. 799s Type 'q()' to quit R. 799s 799s > suppressPackageStartupMessages(library(stars)) 802s > suppressPackageStartupMessages(library(lwgeom)) 802s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 802s > (x = read_stars(geomatrix)) 802s stars object with 2 dimensions and 1 attribute 802s attribute(s): 802s Min. 1st Qu. Median Mean 3rd Qu. Max. 802s geomatrix.tif 74 107 123 126.765 132 255 802s dimension(s): 803s from to offset delta refsys point x/y 803s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 803s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 803s sheared raster with parameters: -5 -5 803s > new = st_crs(4326) 803s > y = st_transform(x, new) 803s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 803s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 803s > image(y, add = TRUE) 803s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 803s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 804s > 804s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 804s > x = read_stars(tif)[,1:10,1:10,1:3] 804s > x_ = st_transform(x, st_crs(4326)) 804s > x__ = st_transform_proj(x, st_crs(4326)$proj4string) 804s > st_crs(x_) = st_crs(x__) 804s > all.equal(x_,x__) 804s [1] TRUE 804s > 804s > # x__ = st_transform(x, x_) #now in st_warp 804s > # all.equal(x_, x__) 804s > 804s > x = st_xy2sfc(x, as_points = FALSE) 804s > (x_ = st_transform(x, st_crs(4326))) 804s stars object with 2 dimensions and 1 attribute 804s attribute(s): 804s Min. 1st Qu. Median Mean 3rd Qu. Max. 804s L7_ETMs.tif 25 43 51 50.72 60 74 804s dimension(s): 804s from to refsys point 804s geometry 1 100 WGS 84 FALSE 804s band 1 3 NA NA 804s values 804s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 804s band NULL 804s > (x__ = st_transform_proj(x, st_crs(4326))) 804s stars object with 2 dimensions and 1 attribute 804s attribute(s): 804s Min. 1st Qu. Median Mean 3rd Qu. Max. 804s L7_ETMs.tif 25 43 51 50.72 60 74 804s dimension(s): 804s from to refsys point 804s geometry 1 100 WGS 84 FALSE 804s band 1 3 NA NA 804s values 804s geometry POLYGON ((-34.91617 -7.94...,...,POLYGON ((-34.91385 -7.95... 804s band NULL 804s > all.equal(x_,x__,check.attributes = FALSE) 804s [1] TRUE 804s > 804s > # nothing to transform: now errs: 804s > try(st_transform(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 804s Error in st_transform.stars(st_as_stars(list(matrix(1, 10, 10))), st_crs(4326)) : 804s !is.na(st_crs(x)) is not TRUE 804s > try(st_transform_proj(st_as_stars(list(matrix(1,10,10))), st_crs(4326))) 804s Error in st_transform_proj.stars(st_as_stars(list(matrix(1, 10, 10))), : 804s !is.na(st_crs(x)) is not TRUE 804s > 804s BEGIN TEST warp.R 804s 804s R version 4.3.2 (2023-10-31) -- "Eye Holes" 804s Copyright (C) 2023 The R Foundation for Statistical Computing 804s Platform: aarch64-unknown-linux-gnu (64-bit) 804s 804s R is free software and comes with ABSOLUTELY NO WARRANTY. 804s You are welcome to redistribute it under certain conditions. 804s Type 'license()' or 'licence()' for distribution details. 804s 804s R is a collaborative project with many contributors. 804s Type 'contributors()' for more information and 804s 'citation()' on how to cite R or R packages in publications. 804s 804s Type 'demo()' for some demos, 'help()' for on-line help, or 804s 'help.start()' for an HTML browser interface to help. 804s Type 'q()' to quit R. 804s 805s > suppressPackageStartupMessages(library(stars)) 808s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 810s > x = read_stars(geomatrix) 810s > # can stars reproduce what gdal does, by default? 810s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 810s > y = st_warp(x, x2) 810s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 810s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 810s > names(x2) = names(y) 810s > all.equal(x2, y) # yes? 810s [1] TRUE 810s > 810s > # does gdal reproduce with stars template object? 810s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 810s stars object with 2 dimensions and 1 attribute 810s attribute(s): 810s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 810s file.tif 74 115 123 126.4289 132 255 224 810s dimension(s): 810s from to offset delta refsys point x/y 810s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 810s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 810s > 810s > # does gdal reproduce what stars does, default cell size? 810s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 810s stars object with 2 dimensions and 1 attribute 810s attribute(s): 810s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 810s geomatrix.tif 74 115 123 126.4289 132 255 224 810s dimension(s): 810s from to offset delta refsys x/y 810s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 810s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 810s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 810s stars object with 2 dimensions and 1 attribute 810s attribute(s): 810s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 810s file.tif 74 115 123 126.4289 132 255 224 810s dimension(s): 810s from to offset delta refsys point x/y 810s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 810s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 810s > 810s > # try with multiple bands: 810s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 810s > (x1 = read_stars(tif)) 810s stars object with 3 dimensions and 1 attribute 810s attribute(s): 810s Min. 1st Qu. Median Mean 3rd Qu. Max. 810s L7_ETMs.tif 1 54 69 68.91242 86 255 810s dimension(s): 810s from to offset delta refsys point x/y 810s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 810s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 810s band 1 6 NA NA NA NA 810s > tifcp = tempfile(fileext = ".tif") 810s > file.copy(tif, tifcp) 810s [1] TRUE 810s > x1p = read_stars(tifcp, proxy = TRUE) 810s > st_dimensions(x1p) 810s from to offset delta refsys point x/y 810s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 810s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 810s band 1 6 NA NA NA NA 810s > (x1a = st_warp(x1, crs = st_crs(4326))) 810s stars object with 3 dimensions and 1 attribute 810s attribute(s): 810s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 810s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 810s dimension(s): 810s from to offset delta refsys x/y 810s x 1 350 -34.92 0.0002592 WGS 84 [x] 810s y 1 352 -7.95 -0.0002592 WGS 84 [y] 810s band 1 6 NA NA NA 810s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 811s stars object with 3 dimensions and 1 attribute 811s attribute(s): 811s Min. 1st Qu. Median Mean 3rd Qu. Max. 811s file.tif 1 54 69 68.91242 86 255 811s dimension(s): 811s from to offset delta refsys point x/y 811s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 811s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 811s band 1 6 NA NA NA NA 811s > 811s > # does gdal reproduce what stars does? Smaller grid: 811s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3)) 811s stars object with 2 dimensions and 1 attribute 811s attribute(s): 811s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 811s geomatrix.tif 74 107 123 126.7262 132 255 727 811s dimension(s): 811s from to offset delta refsys x/y 811s x 1 44 1840902 3 WGS 84 / UTM zone 11N [x] 811s y 1 44 1144003 -3 WGS 84 / UTM zone 11N [y] 811s > # x2 = x2[,2:43,2:43] 811s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 811s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 811s > ### doesn't work: FIXME: check with more recent GDAL: 811s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 811s stars object with 2 dimensions and 1 attribute 811s attribute(s): 811s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 811s file.tif 74 107 123 126.6584 132 255 727 811s dimension(s): 811s from to offset delta refsys point x/y 811s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 811s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 811s > if (interactive()) { plot(y, breaks = "equal") } 811s > names(x2) = names(y) 811s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 811s > mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 811s [1] 0.9975186 811s > unique(as.vector(x2[[1]]-y[[1]])) 811s [1] NA 0 25 49 8 811s > 811s > g = st_as_stars() 812s > attr(g, "dimensions")$x$offset = 0 812s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 812s > if (interactive()) { plot(g, axes=TRUE) } 812s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 812s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 812s > all.equal(a, b, check.attributes = FALSE) 812s [1] TRUE 812s > 812s BEGIN TEST write.R 812s 812s R version 4.3.2 (2023-10-31) -- "Eye Holes" 812s Copyright (C) 2023 The R Foundation for Statistical Computing 812s Platform: aarch64-unknown-linux-gnu (64-bit) 812s 812s R is free software and comes with ABSOLUTELY NO WARRANTY. 812s You are welcome to redistribute it under certain conditions. 812s Type 'license()' or 'licence()' for distribution details. 812s 812s R is a collaborative project with many contributors. 812s Type 'contributors()' for more information and 812s 'citation()' on how to cite R or R packages in publications. 812s 812s Type 'demo()' for some demos, 'help()' for on-line help, or 812s 'help.start()' for an HTML browser interface to help. 812s Type 'q()' to quit R. 812s 812s > suppressPackageStartupMessages(library(stars)) 815s > 815s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 815s > (x = read_stars(tif)) 816s stars object with 3 dimensions and 1 attribute 816s attribute(s): 816s Min. 1st Qu. Median Mean 3rd Qu. Max. 816s L7_ETMs.tif 1 54 69 68.91242 86 255 816s dimension(s): 816s from to offset delta refsys point x/y 816s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 816s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 816s band 1 6 NA NA NA NA 816s > 816s > # write stars object: 816s > write_stars(x, tempfile(), driver = "GTiff") 816s > 816s > # write stars_proxy object: 816s > (x = read_stars(tif, proxy = TRUE)) 816s stars_proxy object with 1 attribute in 1 file(s): 816s $L7_ETMs.tif 816s [1] "[...]/L7_ETMs.tif" 816s 816s dimension(s): 816s from to offset delta refsys point x/y 816s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 816s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 816s band 1 6 NA NA NA NA 816s > write_stars(x, tempfile(), driver = "GTiff") 816s 816s > 817s autopkgtest [03:57:53]: test run-unit-test: -----------------------] 818s autopkgtest [03:57:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 818s run-unit-test PASS 818s autopkgtest [03:57:54]: test pkg-r-autopkgtest: preparing testbed 972s autopkgtest [04:00:28]: testbed dpkg architecture: arm64 972s autopkgtest [04:00:28]: testbed apt version: 2.7.12 972s autopkgtest [04:00:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 974s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 975s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 975s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 975s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3982 kB] 976s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 976s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [707 kB] 976s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 976s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 976s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 976s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4363 kB] 977s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 977s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [69.8 kB] 977s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 986s Fetched 9842 kB in 6s (1731 kB/s) 987s Reading package lists... 993s Reading package lists... 994s Building dependency tree... 994s Reading state information... 995s Calculating upgrade... 997s The following packages will be REMOVED: 997s libssl3 997s The following NEW packages will be installed: 997s libssl3t64 997s The following packages have been kept back: 997s curl 997s The following packages will be upgraded: 997s fonts-ubuntu-console libbsd0 libc-bin libc6 locales openssl 997s 6 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 997s Need to get 10.4 MB of archives. 997s After this operation, 141 kB of additional disk space will be used. 997s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.39-0ubuntu6 [2776 kB] 998s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.39-0ubuntu6 [591 kB] 998s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 998s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 998s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libbsd0 arm64 0.12.1-1 [41.0 kB] 998s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 locales all 2.39-0ubuntu6 [4232 kB] 998s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 999s Preconfiguring packages ... 1000s Fetched 10.4 MB in 1s (7362 kB/s) 1000s (Reading database ... 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1049s linux-generic is already the newest version (6.8.0-11.11+1). 1049s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1050s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1050s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1050s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1060s Reading package lists... 1060s Reading package lists... 1060s Building dependency tree... 1060s Reading state information... 1062s Calculating upgrade... 1063s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1063s Reading package lists... 1064s Building dependency tree... 1064s Reading state information... 1066s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1066s autopkgtest [04:02:02]: rebooting testbed after setup commands that affected boot 1234s Reading package lists... 1234s Building dependency tree... 1234s Reading state information... 1235s Starting pkgProblemResolver with broken count: 0 1236s Starting 2 pkgProblemResolver with broken count: 0 1236s Done 1237s The following additional packages will be installed: 1237s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 1237s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1237s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 1237s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 1237s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gdal-data gdal-plugins 1237s gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 1237s gfortran-aarch64-linux-gnu icu-devtools javascript-common libaec0 1237s libarmadillo12 libarpack2 libasan8 libatomic1 libblas-dev libblas3 libblosc1 1237s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10 1237s libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 1237s libfreexl1 libfyba0 libgcc-13-dev libgdal34 libgeos-c1v5 libgeos3.12.1 1237s libgeotiff5 libgfortran-13-dev libgfortran5 libgif7 libgomp1 libgraphite2-3 1237s libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 1237s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libice6 1237s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 1237s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 1237s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 1237s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 1237s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 1237s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 1237s libkmlbase1 libkmldom1 libkmlengine1 liblapack-dev liblapack3 liblcms2-2 1237s liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1 libmpc3 1237s libmysqlclient21 libncurses-dev libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 1237s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 1237s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 1237s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 1237s libproj25 libqhull-r8.0 libreadline-dev librttopo1 libsharpyuv0 libsm6 1237s libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 1237s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libudunits2-0 1237s libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 1237s libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler 1237s mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc 1237s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin proj-data 1237s r-base-core r-base-dev r-cran-abind r-cran-areal r-cran-askpass 1237s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 1237s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 1237s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 1237s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 1237s r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj 1237s r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate 1237s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn r-cran-fontawesome 1237s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 1237s r-cran-ggforce r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue 1237s r-cran-goftest r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools 1237s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 1237s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 1237s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 1237s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 1237s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 1237s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 1237s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 1237s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 1237s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 1237s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 1237s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 1237s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 1237s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 1237s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 1237s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 1237s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 1237s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 1237s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 1237s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 1237s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 1237s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 1237s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 1237s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 1237s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo rpcsvc-proto unixodbc-common 1237s unzip x11-common xdg-utils zip zlib1g-dev 1237s Suggested packages: 1237s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 1237s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 1237s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 1237s | lighttpd | httpd liblapack-doc glibc-doc geotiff-bin gdal-bin 1237s libgeotiff-epsg libhdf4-doc libhdf4-alt-dev hdf4-tools 1237s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 1237s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 1237s libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 1237s fonts-stix libjs-mathjax-doc liblcms2-utils liblzma-doc ncurses-doc 1237s odbc-postgresql tdsodbc ogdi-bin proj-bin readline-doc libstdc++-13-doc 1237s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 1237s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 1237s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 1237s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 1237s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 1237s texlive-extra-utils texinfo r-cran-png r-cran-spelling r-cran-lpsolve 1237s r-cran-quadprog r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 1237s r-cran-jpeg r-cran-rstudioapi r-cran-rmysql r-cran-sessioninfo 1237s r-cran-reshape2 r-cran-markdown r-cran-magick r-cran-getopt r-cran-mapproj 1237s r-cran-tinytest r-cran-bit64 r-cran-formattable r-cran-nanotime 1237s r-cran-palmerpenguins r-cran-vdiffr r-cran-roxygen2 r-cran-inline 1237s r-cran-hmisc r-cran-rvest r-cran-bench r-cran-blob r-cran-here r-cran-hms 1237s Recommended packages: 1237s bzip2-doc manpages manpages-dev libc-devtools proj-bin libheif-plugin-aomenc 1237s libheif-plugin-x265 node-jquery libpng-tools poppler-data r-recommended 1237s r-doc-html r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-spdata 1237s r-cran-tinytest r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami 1237s r-cran-data.table r-cran-rcpparmadillo r-cran-xml2 r-cran-dt r-cran-bench 1237s r-cran-decor r-cran-lobstr r-cran-progress r-cran-spelling r-cran-webutils 1237s r-cran-gh r-cran-broom r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql 1237s r-cran-rsqlite r-cran-unitizer r-cran-rsvg r-cran-rhpcblasctl r-cran-r.rsp 1237s r-cran-markdown r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp 1237s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr 1237s r-cran-lintr r-cran-pander r-cran-testit r-cran-jpeg r-cran-png r-cran-readr 1237s r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 1237s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-tidyverse 1237s r-cran-r.utils r-cran-geosphere r-cran-runit r-cran-pkgdown r-cran-zip 1237s r-cran-ncdf4 r-cran-sodium r-cran-lubridate r-cran-bitops r-cran-mathjaxr 1237s r-cran-mockr r-cran-remotes r-cran-aer r-cran-car r-cran-spdep 1237s r-cran-statmod r-cran-urca r-cran-foreign r-cran-bookdown r-cran-webfakes 1237s r-cran-cba r-cran-pingr r-cran-igraph r-cran-gstat r-cran-fields 1237s r-cran-exactextractr r-cran-gbrd r-cran-usethis r-cran-dygraphs 1237s r-cran-rsconnect r-cran-downlit r-cran-bit64 r-cran-dichromat r-cran-hms 1237s r-cran-blob r-cran-googlevis r-cran-isocodes r-cran-sftime r-cran-sm 1237s r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv r-cran-glmnet 1237s r-cran-cubelyr r-cran-xml r-cran-formattable r-cran-zeallot r-cran-renv 1237s r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 1237s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 1237s x11-xserver-utils 1237s The following NEW packages will be installed: 1237s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 1237s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 1237s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 1237s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 1237s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 1237s gcc-aarch64-linux-gnu gdal-data gdal-plugins gfortran gfortran-13 1237s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 1237s javascript-common libaec0 libarmadillo12 libarpack2 libasan8 libatomic1 1237s libblas-dev libblas3 libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 1237s libcc1-0 libcfitsio10 libcrypt-dev libdatrie1 libdav1d7 libde265-0 1237s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgcc-13-dev libgdal34 1237s libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran-13-dev libgfortran5 1237s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 1237s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 1237s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 1237s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 1237s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 1237s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 1237s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 1237s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 1237s libkmlbase1 libkmldom1 libkmlengine1 liblapack-dev liblapack3 liblcms2-2 1237s liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1 libmpc3 1237s libmysqlclient21 libncurses-dev libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 1237s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 1237s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 1237s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 1237s libproj25 libqhull-r8.0 libreadline-dev librttopo1 libsharpyuv0 libsm6 1237s libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 1237s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libudunits2-0 1237s libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 1237s libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev littler 1237s mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc 1237s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin proj-data 1237s r-base-core r-base-dev r-cran-abind r-cran-areal r-cran-askpass 1237s r-cran-base64enc r-cran-bdsmatrix r-cran-brio r-cran-bslib r-cran-cachem 1237s r-cran-cairo r-cran-callr r-cran-class r-cran-classint r-cran-cli 1238s r-cran-clue r-cran-cluster r-cran-codetools r-cran-collapse 1238s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 1238s r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj 1238s r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate 1238s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn r-cran-fontawesome 1238s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 1238s r-cran-ggforce r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue 1238s r-cran-goftest r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools 1238s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 1238s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 1238s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 1238s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 1238s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 1238s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 1238s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 1238s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 1238s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 1238s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 1238s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 1238s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack 1238s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf 1238s r-cran-rpart r-cran-rprojroot r-cran-s2 r-cran-sandwich r-cran-sass 1238s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 1238s r-cran-spacetime r-cran-spatstat r-cran-spatstat.data 1238s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 1238s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 1238s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 1238s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor r-cran-terra 1238s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 1238s r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs r-cran-viridis 1238s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 1238s r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo rpcsvc-proto unixodbc-common 1238s unzip x11-common xdg-utils zip zlib1g-dev 1238s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 1238s Need to get 365 MB/365 MB of archives. 1238s After this operation, 1086 MB of additional disk space will be used. 1238s Get:1 /tmp/autopkgtest.GVs4ob/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [904 B] 1238s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 1238s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 1238s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 1238s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 1238s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 1238s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 1239s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 1239s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 1239s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 1239s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 1239s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 1239s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 1239s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 1239s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 1239s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 1239s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 1239s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 1239s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 1239s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 1240s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 1240s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 1240s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 1241s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 1241s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 1241s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 1241s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 1241s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 1241s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 1241s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 1241s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 1241s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 1241s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 1241s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1241s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1241s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 1241s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 1241s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 1241s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1241s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1241s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1242s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-data all 3.8.4+dfsg-1 [261 kB] 1242s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-plugins arm64 3.8.4+dfsg-1 [24.5 kB] 1242s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 1242s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 1242s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 1242s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 1242s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 1242s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 1242s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 1242s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 1242s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 1242s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 1242s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 1242s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 1242s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 1242s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 1242s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 1242s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 1242s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 1242s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 1242s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 1242s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 1242s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 1242s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 1242s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 1242s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libcfitsio10 arm64 4.3.1-1 [519 kB] 1243s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 1243s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 1243s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 1243s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 1243s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 1243s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libminizip1 arm64 1:1.3.dfsg-3ubuntu1 [22.3 kB] 1243s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 1243s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos3.12.1 arm64 3.12.1-1 [825 kB] 1243s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos-c1v5 arm64 3.12.1-1 [88.8 kB] 1243s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 1243s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 1243s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 1243s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1243s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 1243s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 1243s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 1243s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 1243s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 1243s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 1243s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 1243s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 1243s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 1243s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 1243s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 1243s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 1243s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 1243s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 1243s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlbase1 arm64 1.3.0-10 [45.7 kB] 1243s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmldom1 arm64 1.3.0-10 [140 kB] 1243s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlengine1 arm64 1.3.0-10 [64.9 kB] 1243s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 1243s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 1244s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 1244s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 1244s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 1244s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 1244s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 1244s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 1244s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 1244s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 1244s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 1244s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 1244s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 1244s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 1244s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 1244s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libspatialite8 arm64 5.1.0-1 [1938 kB] 1245s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces-c3.2 arm64 3.2.4+debian-1.1 [1065 kB] 1245s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libgdal34 arm64 3.8.4+dfsg-1 [7887 kB] 1246s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 1246s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 1246s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 1246s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 1246s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 1246s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 1246s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 1247s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 1247s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1247s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1247s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1247s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 1247s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1247s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1247s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1247s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1247s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1247s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1247s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1247s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1247s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1247s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1247s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 1247s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 1247s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 1247s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 1247s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 1247s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 1247s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 1247s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 1247s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 1247s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 1247s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 1247s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 1247s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 1247s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 1247s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 1247s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 1247s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 1247s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 1247s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 1247s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 1247s Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 1247s Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 1247s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 1247s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 1247s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 1247s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 1247s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 1247s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 1247s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 1247s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 1249s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 1249s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 1249s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1249s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1249s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 1249s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 1249s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 1250s Get:175 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 1250s Get:176 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 1250s Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 1250s Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 1250s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 1250s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1250s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 1250s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 1250s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 1250s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 1250s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 1250s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1250s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 1250s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 1250s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 1250s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 1250s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 1250s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 1250s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 1250s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 1250s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 1250s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 1250s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 1250s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 1250s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 1250s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 1250s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 1250s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 1250s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 1251s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 1251s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 1251s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 1251s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 1251s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 1251s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 1251s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 1251s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1 [2989 kB] 1252s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 1252s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 1252s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 1252s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 1252s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bdsmatrix arm64 1.3-6-1 [292 kB] 1252s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 1252s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 1252s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 1252s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 1252s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 1252s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 1252s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1252s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 1252s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1252s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 1252s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 1252s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 1252s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 1252s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 1252s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cairo arm64 1.6-2-1 [89.0 kB] 1252s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 1252s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 1252s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 1252s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 1252s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clue arm64 0.3-65-1 [959 kB] 1252s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 1252s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-collapse arm64 2.0.10-1 [3033 kB] 1252s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 1253s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 1253s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 1253s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 1253s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 1253s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 1253s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 1253s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 1253s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 1253s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 1253s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 1253s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 1253s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 1253s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 1253s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 1253s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 1253s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 1253s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 1253s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 1253s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 1253s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 1253s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 1253s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 1253s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 1253s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 1253s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 1253s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 1253s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 1253s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 1253s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 1254s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 1254s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 1254s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 1254s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 1254s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 1254s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 1254s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tweenr arm64 2.0.2-1 [382 kB] 1254s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 1254s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 1254s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 1254s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggforce arm64 0.4.1-1 [1831 kB] 1254s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 1254s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 1254s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggthemes all 5.1.0-1 [434 kB] 1254s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 1254s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 1254s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 1254s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 1254s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 1254s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 1254s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 1254s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 1254s Get:291 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1255s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 1255s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 1255s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lmtest arm64 0.9.40-1 [396 kB] 1255s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lwgeom arm64 0.2-13-3 [382 kB] 1255s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 1255s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 1256s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-misctools all 0.6-28-1 [99.9 kB] 1256s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 1256s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maxlik all 1.5-2-1 [1550 kB] 1257s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rnetcdf arm64 2.9-1-1 [228 kB] 1257s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 1257s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ncmeta all 0.3.6-1 [360 kB] 1257s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 1257s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 1258s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 1258s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pcict arm64 0.5-4.4-1 [94.0 kB] 1258s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 1258s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 1258s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 1258s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rbibutils arm64 2.2.16-1 [748 kB] 1258s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rdpack all 2.6-1 [742 kB] 1258s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plm all 2.6-3-1 [2141 kB] 1258s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1258s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-randomforest arm64 4.7-1.1-1 [214 kB] 1258s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 1258s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-terra arm64 1.7-65-1 [3587 kB] 1258s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 1258s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 1258s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 1258s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 1258s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1258s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 1258s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1258s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 1258s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 1259s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 1259s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 1259s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 1259s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spacetime all 1.3-1-1 [2804 kB] 1259s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 1259s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 1259s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.geom arm64 3.2-8-1 [3805 kB] 1259s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.random arm64 3.2-2-1 [1127 kB] 1259s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 1259s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 1260s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 1260s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.model arm64 3.2-8-1 [3289 kB] 1260s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.linnet arm64 3.1-3-1 [1404 kB] 1260s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 1260s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 1260s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 1260s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 1263s Preconfiguring packages ... 1263s Fetched 365 MB in 23s (16.2 MB/s) 1263s Selecting previously unselected package libc-dev-bin. 1263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 1263s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 1263s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 1263s Selecting previously unselected package linux-libc-dev:arm64. 1263s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 1263s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 1264s Selecting previously unselected package libcrypt-dev:arm64. 1264s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 1264s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 1264s Selecting previously unselected package rpcsvc-proto. 1264s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 1264s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 1264s Selecting previously unselected package libc6-dev:arm64. 1264s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_arm64.deb ... 1264s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 1265s Selecting previously unselected package libisl23:arm64. 1265s Preparing to unpack .../005-libisl23_0.26-3_arm64.deb ... 1265s Unpacking libisl23:arm64 (0.26-3) ... 1265s Selecting previously unselected package libmpc3:arm64. 1265s Preparing to unpack .../006-libmpc3_1.3.1-1_arm64.deb ... 1265s Unpacking libmpc3:arm64 (1.3.1-1) ... 1265s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 1265s Preparing to unpack .../007-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1265s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1266s Selecting previously unselected package cpp-13. 1266s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 1266s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 1266s Selecting previously unselected package cpp-aarch64-linux-gnu. 1266s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 1266s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 1266s Selecting previously unselected package cpp. 1266s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 1266s Unpacking cpp (4:13.2.0-7ubuntu1) ... 1266s Selecting previously unselected package libcc1-0:arm64. 1266s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 1266s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libgomp1:arm64. 1266s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 1266s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libitm1:arm64. 1266s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_arm64.deb ... 1266s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 1266s Selecting previously unselected package libatomic1:arm64. 1267s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 1267s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 1267s Selecting previously unselected package libasan8:arm64. 1267s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_arm64.deb ... 1267s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 1267s Selecting previously unselected package liblsan0:arm64. 1267s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 1267s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 1267s Selecting previously unselected package libtsan2:arm64. 1267s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 1267s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 1267s Selecting previously unselected package libubsan1:arm64. 1267s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 1267s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 1268s Selecting previously unselected package libhwasan0:arm64. 1268s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 1268s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 1268s Selecting previously unselected package libgcc-13-dev:arm64. 1268s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 1268s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 1268s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 1268s Preparing to unpack .../021-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1268s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1270s Selecting previously unselected package gcc-13. 1270s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 1270s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 1270s Selecting previously unselected package gcc-aarch64-linux-gnu. 1270s Preparing to unpack .../023-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 1270s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 1270s Selecting previously unselected package gcc. 1270s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 1270s Unpacking gcc (4:13.2.0-7ubuntu1) ... 1270s Selecting previously unselected package libstdc++-13-dev:arm64. 1270s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 1270s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 1271s Selecting previously unselected package g++-13-aarch64-linux-gnu. 1271s Preparing to unpack .../026-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1271s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1272s Selecting previously unselected package g++-13. 1272s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_arm64.deb ... 1272s Unpacking g++-13 (13.2.0-17ubuntu2) ... 1272s Selecting previously unselected package g++-aarch64-linux-gnu. 1272s Preparing to unpack .../028-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 1272s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 1272s Selecting previously unselected package g++. 1272s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 1272s Unpacking g++ (4:13.2.0-7ubuntu1) ... 1272s Selecting previously unselected package build-essential. 1272s Preparing to unpack .../030-build-essential_12.10ubuntu1_arm64.deb ... 1272s Unpacking build-essential (12.10ubuntu1) ... 1272s Selecting previously unselected package dctrl-tools. 1272s Preparing to unpack .../031-dctrl-tools_2.24-3build2_arm64.deb ... 1272s Unpacking dctrl-tools (2.24-3build2) ... 1272s Selecting previously unselected package fonts-dejavu-mono. 1272s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 1272s Unpacking fonts-dejavu-mono (2.37-8) ... 1272s Selecting previously unselected package fonts-dejavu-core. 1272s Preparing to unpack .../033-fonts-dejavu-core_2.37-8_all.deb ... 1273s Unpacking fonts-dejavu-core (2.37-8) ... 1273s Selecting previously unselected package fontconfig-config. 1273s Preparing to unpack .../034-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 1273s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 1273s Selecting previously unselected package libfontconfig1:arm64. 1273s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 1273s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 1273s Selecting previously unselected package fontconfig. 1274s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 1274s Unpacking fontconfig (2.15.0-1ubuntu1) ... 1274s Selecting previously unselected package fonts-font-awesome. 1274s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1274s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1274s Selecting previously unselected package fonts-glyphicons-halflings. 1274s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1274s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1274s Selecting previously unselected package fonts-mathjax. 1274s Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1274s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1275s Selecting previously unselected package gdal-data. 1275s Preparing to unpack .../040-gdal-data_3.8.4+dfsg-1_all.deb ... 1275s Unpacking gdal-data (3.8.4+dfsg-1) ... 1275s Selecting previously unselected package gdal-plugins:arm64. 1275s Preparing to unpack .../041-gdal-plugins_3.8.4+dfsg-1_arm64.deb ... 1275s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-1) ... 1275s Selecting previously unselected package libgfortran5:arm64. 1275s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 1275s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 1275s Selecting previously unselected package libgfortran-13-dev:arm64. 1275s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 1275s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 1275s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 1275s Preparing to unpack .../044-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 1275s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 1276s Selecting previously unselected package gfortran-13. 1276s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 1276s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 1276s Selecting previously unselected package gfortran-aarch64-linux-gnu. 1276s Preparing to unpack .../046-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 1276s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 1276s Selecting previously unselected package gfortran. 1276s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 1276s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 1276s Selecting previously unselected package icu-devtools. 1276s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_arm64.deb ... 1276s Unpacking icu-devtools (74.2-1ubuntu1) ... 1276s Selecting previously unselected package javascript-common. 1276s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 1277s Unpacking javascript-common (11+nmu1) ... 1277s Selecting previously unselected package libaec0:arm64. 1277s Preparing to unpack .../050-libaec0_1.1.2-1_arm64.deb ... 1277s Unpacking libaec0:arm64 (1.1.2-1) ... 1277s Selecting previously unselected package libblas3:arm64. 1277s Preparing to unpack .../051-libblas3_3.12.0-3_arm64.deb ... 1277s Unpacking libblas3:arm64 (3.12.0-3) ... 1277s Selecting previously unselected package liblapack3:arm64. 1277s Preparing to unpack .../052-liblapack3_3.12.0-3_arm64.deb ... 1277s Unpacking liblapack3:arm64 (3.12.0-3) ... 1277s Selecting previously unselected package libarpack2:arm64. 1277s Preparing to unpack .../053-libarpack2_3.9.1-1_arm64.deb ... 1277s Unpacking libarpack2:arm64 (3.9.1-1) ... 1277s Selecting previously unselected package libsuperlu6:arm64. 1277s Preparing to unpack .../054-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 1277s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 1277s Selecting previously unselected package libarmadillo12. 1277s Preparing to unpack .../055-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 1277s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 1277s Selecting previously unselected package libblas-dev:arm64. 1277s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 1277s Unpacking libblas-dev:arm64 (3.12.0-3) ... 1278s Selecting previously unselected package libsnappy1v5:arm64. 1278s Preparing to unpack .../057-libsnappy1v5_1.1.10-1_arm64.deb ... 1278s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 1278s Selecting previously unselected package libblosc1:arm64. 1278s Preparing to unpack .../058-libblosc1_1.21.5+ds-1_arm64.deb ... 1278s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 1278s Selecting previously unselected package libbz2-dev:arm64. 1278s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 1278s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 1278s Selecting previously unselected package libpixman-1-0:arm64. 1278s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 1278s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 1278s Selecting previously unselected package libxcb-render0:arm64. 1278s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 1278s Unpacking libxcb-render0:arm64 (1.15-1) ... 1278s Selecting previously unselected package libxcb-shm0:arm64. 1278s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 1278s Unpacking libxcb-shm0:arm64 (1.15-1) ... 1278s Selecting previously unselected package libxrender1:arm64. 1278s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 1278s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 1278s Selecting previously unselected package libcairo2:arm64. 1278s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 1278s Unpacking libcairo2:arm64 (1.18.0-1) ... 1278s Selecting previously unselected package libcfitsio10:arm64. 1278s Preparing to unpack .../065-libcfitsio10_4.3.1-1_arm64.deb ... 1278s Unpacking libcfitsio10:arm64 (4.3.1-1) ... 1279s Selecting previously unselected package libdatrie1:arm64. 1279s Preparing to unpack .../066-libdatrie1_0.2.13-3_arm64.deb ... 1279s Unpacking libdatrie1:arm64 (0.2.13-3) ... 1279s Selecting previously unselected package libdav1d7:arm64. 1279s Preparing to unpack .../067-libdav1d7_1.4.0-1_arm64.deb ... 1279s Unpacking libdav1d7:arm64 (1.4.0-1) ... 1279s Selecting previously unselected package libde265-0:arm64. 1279s Preparing to unpack .../068-libde265-0_1.0.15-1_arm64.deb ... 1279s Unpacking libde265-0:arm64 (1.0.15-1) ... 1279s Selecting previously unselected package libdeflate0:arm64. 1279s Preparing to unpack .../069-libdeflate0_1.19-1_arm64.deb ... 1279s Unpacking libdeflate0:arm64 (1.19-1) ... 1279s Selecting previously unselected package libfyba0:arm64. 1279s Preparing to unpack .../070-libfyba0_4.1.1-8_arm64.deb ... 1279s Unpacking libfyba0:arm64 (4.1.1-8) ... 1279s Selecting previously unselected package libminizip1:arm64. 1279s Preparing to unpack .../071-libminizip1_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 1279s Unpacking libminizip1:arm64 (1:1.3.dfsg-3ubuntu1) ... 1279s Selecting previously unselected package libfreexl1:arm64. 1279s Preparing to unpack .../072-libfreexl1_2.0.0-1_arm64.deb ... 1279s Unpacking libfreexl1:arm64 (2.0.0-1) ... 1279s Selecting previously unselected package libgeos3.12.1:arm64. 1279s Preparing to unpack .../073-libgeos3.12.1_3.12.1-1_arm64.deb ... 1279s Unpacking libgeos3.12.1:arm64 (3.12.1-1) ... 1280s Selecting previously unselected package libgeos-c1v5:arm64. 1280s Preparing to unpack .../074-libgeos-c1v5_3.12.1-1_arm64.deb ... 1280s Unpacking libgeos-c1v5:arm64 (3.12.1-1) ... 1280s Selecting previously unselected package proj-data. 1280s Preparing to unpack .../075-proj-data_9.3.1-1_all.deb ... 1280s Unpacking proj-data (9.3.1-1) ... 1280s Selecting previously unselected package libjbig0:arm64. 1280s Preparing to unpack .../076-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 1280s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 1280s Selecting previously unselected package libjpeg-turbo8:arm64. 1280s Preparing to unpack .../077-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 1280s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 1281s Selecting previously unselected package libjpeg8:arm64. 1281s Preparing to unpack .../078-libjpeg8_8c-2ubuntu11_arm64.deb ... 1281s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1281s Selecting previously unselected package liblerc4:arm64. 1281s Preparing to unpack .../079-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 1281s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 1281s Selecting previously unselected package libsharpyuv0:arm64. 1281s Preparing to unpack .../080-libsharpyuv0_1.3.2-0.4_arm64.deb ... 1281s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 1281s Selecting previously unselected package libwebp7:arm64. 1281s Preparing to unpack .../081-libwebp7_1.3.2-0.4_arm64.deb ... 1281s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 1281s Selecting previously unselected package libtiff6:arm64. 1281s Preparing to unpack .../082-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 1281s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 1281s Selecting previously unselected package libproj25:arm64. 1281s Preparing to unpack .../083-libproj25_9.3.1-1_arm64.deb ... 1281s Unpacking libproj25:arm64 (9.3.1-1) ... 1281s Selecting previously unselected package libgeotiff5:arm64. 1281s Preparing to unpack .../084-libgeotiff5_1.7.1-5_arm64.deb ... 1281s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 1281s Selecting previously unselected package libgif7:arm64. 1281s Preparing to unpack .../085-libgif7_5.2.1-2.5_arm64.deb ... 1281s Unpacking libgif7:arm64 (5.2.1-2.5) ... 1282s Selecting previously unselected package libhdf4-0-alt. 1282s Preparing to unpack .../086-libhdf4-0-alt_4.2.16-3_arm64.deb ... 1282s Unpacking libhdf4-0-alt (4.2.16-3) ... 1282s Selecting previously unselected package libsz2:arm64. 1282s Preparing to unpack .../087-libsz2_1.1.2-1_arm64.deb ... 1282s Unpacking libsz2:arm64 (1.1.2-1) ... 1282s Selecting previously unselected package libhdf5-103-1:arm64. 1282s Preparing to unpack .../088-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 1282s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 1282s Selecting previously unselected package libheif-plugin-dav1d:arm64. 1282s Preparing to unpack .../089-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 1282s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 1282s Selecting previously unselected package libheif-plugin-libde265:arm64. 1282s Preparing to unpack .../090-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 1282s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 1282s Selecting previously unselected package libheif1:arm64. 1282s Preparing to unpack .../091-libheif1_1.17.6-1ubuntu1_arm64.deb ... 1282s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 1282s Selecting previously unselected package liburiparser1:arm64. 1282s Preparing to unpack .../092-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 1282s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 1282s Selecting previously unselected package libkmlbase1:arm64. 1282s Preparing to unpack .../093-libkmlbase1_1.3.0-10_arm64.deb ... 1282s Unpacking libkmlbase1:arm64 (1.3.0-10) ... 1282s Selecting previously unselected package libkmldom1:arm64. 1282s Preparing to unpack .../094-libkmldom1_1.3.0-10_arm64.deb ... 1282s Unpacking libkmldom1:arm64 (1.3.0-10) ... 1283s Selecting previously unselected package libkmlengine1:arm64. 1283s Preparing to unpack .../095-libkmlengine1_1.3.0-10_arm64.deb ... 1283s Unpacking libkmlengine1:arm64 (1.3.0-10) ... 1283s Selecting previously unselected package mysql-common. 1283s Preparing to unpack .../096-mysql-common_5.8+1.1.0_all.deb ... 1283s Unpacking mysql-common (5.8+1.1.0) ... 1283s Selecting previously unselected package libmysqlclient21:arm64. 1283s Preparing to unpack .../097-libmysqlclient21_8.0.36-1_arm64.deb ... 1283s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 1283s Selecting previously unselected package libhdf5-hl-100:arm64. 1283s Preparing to unpack .../098-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 1283s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 1283s Selecting previously unselected package libnetcdf19:arm64. 1283s Preparing to unpack .../099-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 1283s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 1283s Selecting previously unselected package libltdl7:arm64. 1283s Preparing to unpack .../100-libltdl7_2.4.7-7_arm64.deb ... 1283s Unpacking libltdl7:arm64 (2.4.7-7) ... 1283s Selecting previously unselected package libodbc2:arm64. 1283s Preparing to unpack .../101-libodbc2_2.3.12-1_arm64.deb ... 1283s Unpacking libodbc2:arm64 (2.3.12-1) ... 1284s Selecting previously unselected package unixodbc-common. 1284s Preparing to unpack .../102-unixodbc-common_2.3.12-1_all.deb ... 1284s Unpacking unixodbc-common (2.3.12-1) ... 1284s Selecting previously unselected package libodbcinst2:arm64. 1284s Preparing to unpack .../103-libodbcinst2_2.3.12-1_arm64.deb ... 1284s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 1284s Selecting previously unselected package libogdi4.1. 1284s Preparing to unpack .../104-libogdi4.1_4.1.1+ds-1_arm64.deb ... 1284s Unpacking libogdi4.1 (4.1.1+ds-1) ... 1284s Selecting previously unselected package libopenjp2-7:arm64. 1284s Preparing to unpack .../105-libopenjp2-7_2.5.0-2_arm64.deb ... 1284s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 1284s Selecting previously unselected package liblcms2-2:arm64. 1284s Preparing to unpack .../106-liblcms2-2_2.14-2_arm64.deb ... 1284s Unpacking liblcms2-2:arm64 (2.14-2) ... 1284s Selecting previously unselected package libpoppler134:arm64. 1284s Preparing to unpack .../107-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 1284s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 1284s Selecting previously unselected package libpq5:arm64. 1284s Preparing to unpack .../108-libpq5_16.2-1_arm64.deb ... 1284s Unpacking libpq5:arm64 (16.2-1) ... 1284s Selecting previously unselected package libqhull-r8.0:arm64. 1284s Preparing to unpack .../109-libqhull-r8.0_2020.2-6_arm64.deb ... 1284s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 1284s Selecting previously unselected package librttopo1:arm64. 1284s Preparing to unpack .../110-librttopo1_1.1.0-3_arm64.deb ... 1284s Unpacking librttopo1:arm64 (1.1.0-3) ... 1285s Selecting previously unselected package libspatialite8:arm64. 1285s Preparing to unpack .../111-libspatialite8_5.1.0-1_arm64.deb ... 1285s Unpacking libspatialite8:arm64 (5.1.0-1) ... 1285s Selecting previously unselected package libxerces-c3.2:arm64. 1285s Preparing to unpack .../112-libxerces-c3.2_3.2.4+debian-1.1_arm64.deb ... 1285s Unpacking libxerces-c3.2:arm64 (3.2.4+debian-1.1) ... 1285s Selecting previously unselected package libgdal34:arm64. 1285s Preparing to unpack .../113-libgdal34_3.8.4+dfsg-1_arm64.deb ... 1285s Unpacking libgdal34:arm64 (3.8.4+dfsg-1) ... 1286s Selecting previously unselected package libgraphite2-3:arm64. 1286s Preparing to unpack .../114-libgraphite2-3_1.3.14-2_arm64.deb ... 1286s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 1286s Selecting previously unselected package libharfbuzz0b:arm64. 1286s Preparing to unpack .../115-libharfbuzz0b_8.3.0-2_arm64.deb ... 1286s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 1286s Selecting previously unselected package x11-common. 1286s Preparing to unpack .../116-x11-common_1%3a7.7+23ubuntu2_all.deb ... 1286s Unpacking x11-common (1:7.7+23ubuntu2) ... 1286s Selecting previously unselected package libice6:arm64. 1286s Preparing to unpack .../117-libice6_2%3a1.0.10-1build2_arm64.deb ... 1286s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 1286s Selecting previously unselected package libicu-dev:arm64. 1286s Preparing to unpack .../118-libicu-dev_74.2-1ubuntu1_arm64.deb ... 1286s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 1287s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 1287s Preparing to unpack .../119-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 1287s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 1287s Selecting previously unselected package libjpeg8-dev:arm64. 1287s Preparing to unpack .../120-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 1287s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 1288s Selecting previously unselected package libjpeg-dev:arm64. 1288s Preparing to unpack .../121-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 1288s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 1288s Selecting previously unselected package libjs-bootstrap. 1288s Preparing to unpack .../122-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 1288s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 1288s Selecting previously unselected package libjs-popper.js. 1288s Preparing to unpack .../123-libjs-popper.js_1.16.1+ds-6_all.deb ... 1288s Unpacking libjs-popper.js (1.16.1+ds-6) ... 1288s Selecting previously unselected package libjs-bootstrap4. 1288s Preparing to unpack .../124-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 1288s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 1288s Selecting previously unselected package libjs-d3. 1288s Preparing to unpack .../125-libjs-d3_3.5.17-4_all.deb ... 1288s Unpacking libjs-d3 (3.5.17-4) ... 1288s Selecting previously unselected package libjs-es5-shim. 1288s Preparing to unpack .../126-libjs-es5-shim_4.6.7-2_all.deb ... 1288s Unpacking libjs-es5-shim (4.6.7-2) ... 1289s Selecting previously unselected package libjs-highlight.js. 1289s Preparing to unpack .../127-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 1289s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 1289s Selecting previously unselected package libjs-jquery. 1289s Preparing to unpack .../128-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1289s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1289s Selecting previously unselected package libjs-jquery-datatables. 1289s Preparing to unpack .../129-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 1289s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 1289s Selecting previously unselected package libjs-sifter.js. 1289s Preparing to unpack .../130-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 1289s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 1289s Selecting previously unselected package libjs-microplugin.js. 1289s Preparing to unpack .../131-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 1289s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 1289s Selecting previously unselected package libjs-jquery-selectize.js. 1289s Preparing to unpack .../132-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 1289s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1289s Selecting previously unselected package libjs-jquery-ui. 1289s Preparing to unpack .../133-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1289s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1290s Selecting previously unselected package libjs-json. 1290s Preparing to unpack .../134-libjs-json_0~20221030+~1.0.8-1_all.deb ... 1290s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 1290s Selecting previously unselected package libjs-prettify. 1290s Preparing to unpack .../135-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 1290s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 1290s Selecting previously unselected package liblapack-dev:arm64. 1290s Preparing to unpack .../136-liblapack-dev_3.12.0-3_arm64.deb ... 1290s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 1291s Selecting previously unselected package liblua5.4-0:arm64. 1291s Preparing to unpack .../137-liblua5.4-0_5.4.6-3_arm64.deb ... 1291s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 1291s Selecting previously unselected package libncurses-dev:arm64. 1291s Preparing to unpack .../138-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 1291s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 1291s Selecting previously unselected package libthai-data. 1291s Preparing to unpack .../139-libthai-data_0.1.29-2_all.deb ... 1291s Unpacking libthai-data (0.1.29-2) ... 1291s Selecting previously unselected package libthai0:arm64. 1291s Preparing to unpack .../140-libthai0_0.1.29-2_arm64.deb ... 1291s Unpacking libthai0:arm64 (0.1.29-2) ... 1291s Selecting previously unselected package libpango-1.0-0:arm64. 1291s Preparing to unpack .../141-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 1291s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 1291s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1291s 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.../152-libpng-dev_1.6.43-1_arm64.deb ... 1293s Unpacking libpng-dev:arm64 (1.6.43-1) ... 1293s Selecting previously unselected package libreadline-dev:arm64. 1293s Preparing to unpack .../153-libreadline-dev_8.2-3_arm64.deb ... 1293s Unpacking libreadline-dev:arm64 (8.2-3) ... 1293s Selecting previously unselected package libsm6:arm64. 1293s Preparing to unpack .../154-libsm6_2%3a1.2.3-1build2_arm64.deb ... 1293s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 1293s Selecting previously unselected package libtcl8.6:arm64. 1293s Preparing to unpack .../155-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 1293s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 1293s Selecting previously unselected package libxft2:arm64. 1293s Preparing to unpack .../156-libxft2_2.3.6-1_arm64.deb ... 1293s Unpacking libxft2:arm64 (2.3.6-1) ... 1293s Selecting previously unselected package libxss1:arm64. 1293s Preparing to unpack .../157-libxss1_1%3a1.2.3-1build2_arm64.deb ... 1293s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 1293s Selecting previously unselected package libtk8.6:arm64. 1293s Preparing to unpack .../158-libtk8.6_8.6.14-1_arm64.deb ... 1293s Unpacking libtk8.6:arm64 (8.6.14-1) ... 1294s Selecting previously unselected package libudunits2-data. 1294s Preparing to unpack .../159-libudunits2-data_2.2.28-7_all.deb ... 1294s Unpacking libudunits2-data (2.2.28-7) ... 1294s Selecting previously unselected package libudunits2-0. 1294s Preparing to unpack .../160-libudunits2-0_2.2.28-7_arm64.deb ... 1294s Unpacking libudunits2-0 (2.2.28-7) ... 1294s Selecting previously unselected package libxt6:arm64. 1294s Preparing to unpack .../161-libxt6_1%3a1.2.1-1.1_arm64.deb ... 1294s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 1294s Selecting previously unselected package zip. 1294s Preparing to unpack .../162-zip_3.0-13_arm64.deb ... 1294s Unpacking zip (3.0-13) ... 1294s Selecting previously unselected package unzip. 1294s Preparing to unpack .../163-unzip_6.0-28ubuntu3_arm64.deb ... 1294s Unpacking unzip (6.0-28ubuntu3) ... 1294s Selecting previously unselected package xdg-utils. 1294s Preparing to unpack .../164-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 1294s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 1294s Selecting previously unselected package r-base-core. 1294s Preparing to unpack .../165-r-base-core_4.3.2-1build1_arm64.deb ... 1294s Unpacking r-base-core (4.3.2-1build1) ... 1296s Selecting previously unselected package r-cran-littler. 1296s Preparing to unpack .../166-r-cran-littler_0.3.19-1_arm64.deb ... 1296s Unpacking r-cran-littler (0.3.19-1) ... 1296s Selecting previously unselected package littler. 1296s Preparing to unpack .../167-littler_0.3.19-1_all.deb ... 1296s Unpacking littler (0.3.19-1) ... 1296s Selecting previously unselected package node-bootstrap-sass. 1296s Preparing to unpack .../168-node-bootstrap-sass_3.4.3-2_all.deb ... 1296s Unpacking node-bootstrap-sass (3.4.3-2) ... 1296s Selecting previously unselected package node-html5shiv. 1296s Preparing to unpack .../169-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1296s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1296s Selecting previously unselected package node-normalize.css. 1296s Preparing to unpack .../170-node-normalize.css_8.0.1-5_all.deb ... 1296s Unpacking node-normalize.css (8.0.1-5) ... 1296s Selecting previously unselected package pandoc-data. 1296s Preparing to unpack .../171-pandoc-data_3.1.3-1_all.deb ... 1296s Unpacking pandoc-data (3.1.3-1) ... 1297s Selecting previously unselected package pandoc. 1297s Preparing to unpack .../172-pandoc_3.1.3+ds-2_arm64.deb ... 1297s Unpacking pandoc (3.1.3+ds-2) ... 1301s Selecting previously unselected package pkgconf-bin. 1301s Preparing to unpack .../173-pkgconf-bin_1.8.1-2_arm64.deb ... 1301s Unpacking pkgconf-bin (1.8.1-2) ... 1301s Selecting previously unselected package pkgconf:arm64. 1301s Preparing to unpack .../174-pkgconf_1.8.1-2_arm64.deb ... 1301s Unpacking pkgconf:arm64 (1.8.1-2) ... 1301s Selecting previously unselected package pkg-config:arm64. 1301s Preparing to unpack .../175-pkg-config_1.8.1-2_arm64.deb ... 1301s Unpacking pkg-config:arm64 (1.8.1-2) ... 1301s Selecting previously unselected package liblzma-dev:arm64. 1301s Preparing to unpack .../176-liblzma-dev_5.4.5-0.3_arm64.deb ... 1301s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 1301s Selecting previously unselected package r-base-dev. 1301s Preparing to unpack .../177-r-base-dev_4.3.2-1build1_all.deb ... 1301s Unpacking r-base-dev (4.3.2-1build1) ... 1301s Selecting previously unselected package pkg-r-autopkgtest. 1301s Preparing to unpack .../178-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1301s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1301s Selecting previously unselected package r-cran-abind. 1301s Preparing to unpack .../179-r-cran-abind_1.4-5-2_all.deb ... 1301s Unpacking r-cran-abind (1.4-5-2) ... 1301s Selecting previously unselected package r-cran-cli. 1301s Preparing to unpack .../180-r-cran-cli_3.6.2-1_arm64.deb ... 1301s Unpacking r-cran-cli (3.6.2-1) ... 1302s Selecting previously unselected package r-cran-generics. 1302s Preparing to unpack .../181-r-cran-generics_0.1.3-1_all.deb ... 1302s Unpacking r-cran-generics (0.1.3-1) ... 1302s Selecting previously unselected package r-cran-glue. 1302s Preparing to unpack .../182-r-cran-glue_1.7.0-1_arm64.deb ... 1302s Unpacking r-cran-glue (1.7.0-1) ... 1302s Selecting previously unselected package r-cran-rlang. 1302s Preparing to unpack .../183-r-cran-rlang_1.1.3-1_arm64.deb ... 1302s Unpacking r-cran-rlang (1.1.3-1) ... 1302s Selecting previously unselected package r-cran-lifecycle. 1303s Preparing to unpack .../184-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1303s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1303s Selecting previously unselected package r-cran-magrittr. 1303s Preparing to unpack .../185-r-cran-magrittr_2.0.3-1_arm64.deb ... 1303s Unpacking r-cran-magrittr (2.0.3-1) ... 1303s Selecting previously unselected package r-cran-fansi. 1303s Preparing to unpack .../186-r-cran-fansi_1.0.5-1_arm64.deb ... 1303s Unpacking r-cran-fansi (1.0.5-1) ... 1303s Selecting previously unselected package r-cran-utf8. 1303s Preparing to unpack .../187-r-cran-utf8_1.2.4-1_arm64.deb ... 1303s Unpacking r-cran-utf8 (1.2.4-1) ... 1303s Selecting previously unselected package r-cran-vctrs. 1303s Preparing to unpack .../188-r-cran-vctrs_0.6.5-1_arm64.deb ... 1303s Unpacking r-cran-vctrs (0.6.5-1) ... 1303s Selecting previously unselected package r-cran-pillar. 1303s Preparing to unpack .../189-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 1303s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 1304s Selecting previously unselected package r-cran-r6. 1304s Preparing to unpack .../190-r-cran-r6_2.5.1-1_all.deb ... 1304s Unpacking r-cran-r6 (2.5.1-1) ... 1304s Selecting previously unselected package r-cran-pkgconfig. 1304s Preparing to unpack .../191-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 1304s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 1304s Selecting previously unselected package r-cran-tibble. 1304s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 1304s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 1304s Selecting previously unselected package r-cran-withr. 1304s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 1304s Unpacking r-cran-withr (2.5.0-1) ... 1304s Selecting previously unselected package r-cran-tidyselect. 1304s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 1304s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 1304s Selecting previously unselected package r-cran-dplyr. 1304s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_arm64.deb ... 1304s Unpacking r-cran-dplyr (1.1.4-1) ... 1305s Selecting previously unselected package r-cran-purrr. 1305s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_arm64.deb ... 1305s Unpacking r-cran-purrr (1.0.2-1) ... 1305s Selecting previously unselected package r-cran-mass. 1305s Preparing to unpack .../197-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 1305s Unpacking r-cran-mass (7.3-60.0.1-1) ... 1305s Selecting previously unselected package r-cran-class. 1305s Preparing to unpack .../198-r-cran-class_7.3-22-2_arm64.deb ... 1305s Unpacking r-cran-class (7.3-22-2) ... 1305s Selecting previously unselected package r-cran-proxy. 1305s Preparing to unpack .../199-r-cran-proxy_0.4-27-1_arm64.deb ... 1305s Unpacking r-cran-proxy (0.4-27-1) ... 1305s Selecting previously unselected package r-cran-e1071. 1305s Preparing to unpack .../200-r-cran-e1071_1.7-14-1_arm64.deb ... 1305s Unpacking r-cran-e1071 (1.7-14-1) ... 1305s Selecting previously unselected package r-cran-kernsmooth. 1305s Preparing to unpack .../201-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 1305s Unpacking r-cran-kernsmooth (2.23-22-1) ... 1305s Selecting previously unselected package r-cran-classint. 1305s Preparing to unpack .../202-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 1305s Unpacking r-cran-classint 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1307s Unpacking r-cran-units (0.8-5+dfsg-1) ... 1307s Selecting previously unselected package r-cran-sf. 1307s Preparing to unpack .../209-r-cran-sf_1.0-15+dfsg-1_arm64.deb ... 1307s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 1307s Selecting previously unselected package r-cran-areal. 1307s Preparing to unpack .../210-r-cran-areal_0.1.8+dfsg-2_all.deb ... 1307s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 1307s Selecting previously unselected package r-cran-sys. 1308s Preparing to unpack .../211-r-cran-sys_3.4.2-1_arm64.deb ... 1308s Unpacking r-cran-sys (3.4.2-1) ... 1308s Selecting previously unselected package r-cran-askpass. 1308s Preparing to unpack .../212-r-cran-askpass_1.2.0-1_arm64.deb ... 1308s Unpacking r-cran-askpass (1.2.0-1) ... 1308s Selecting previously unselected package r-cran-base64enc. 1308s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_arm64.deb ... 1308s Unpacking r-cran-base64enc (0.1-3-3) ... 1308s Selecting previously unselected package r-cran-bdsmatrix. 1308s Preparing to unpack .../214-r-cran-bdsmatrix_1.3-6-1_arm64.deb ... 1308s Unpacking r-cran-bdsmatrix (1.3-6-1) ... 1308s Selecting previously unselected package r-cran-brio. 1308s Preparing to unpack .../215-r-cran-brio_1.1.4-1_arm64.deb ... 1308s Unpacking r-cran-brio (1.1.4-1) ... 1308s Selecting previously unselected package r-cran-fastmap. 1308s Preparing to unpack .../216-r-cran-fastmap_1.1.1-1_arm64.deb ... 1308s Unpacking r-cran-fastmap (1.1.1-1) ... 1308s Selecting previously unselected package r-cran-cachem. 1308s Preparing to unpack .../217-r-cran-cachem_1.0.8-1_arm64.deb ... 1308s Unpacking r-cran-cachem (1.0.8-1) ... 1308s Selecting previously unselected package r-cran-digest. 1308s Preparing to unpack .../218-r-cran-digest_0.6.34-1_arm64.deb ... 1308s Unpacking r-cran-digest (0.6.34-1) ... 1308s Selecting previously unselected package r-cran-ellipsis. 1308s Preparing to unpack .../219-r-cran-ellipsis_0.3.2-2_arm64.deb ... 1308s Unpacking r-cran-ellipsis (0.3.2-2) ... 1309s Selecting previously unselected package r-cran-htmltools. 1309s Preparing to unpack .../220-r-cran-htmltools_0.5.7-1_arm64.deb ... 1309s Unpacking r-cran-htmltools (0.5.7-1) ... 1309s Selecting previously unselected package r-cran-jquerylib. 1309s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1309s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1309s Selecting previously unselected package r-cran-jsonlite. 1309s Preparing to unpack .../222-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 1309s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 1309s Selecting previously unselected package r-cran-memoise. 1309s Preparing to unpack .../223-r-cran-memoise_2.0.1-1_all.deb ... 1309s Unpacking r-cran-memoise (2.0.1-1) ... 1309s Selecting previously unselected package r-cran-mime. 1309s Preparing to unpack .../224-r-cran-mime_0.12-1_arm64.deb ... 1309s Unpacking r-cran-mime (0.12-1) ... 1309s Selecting previously unselected package r-cran-fs. 1309s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 1309s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 1309s Selecting previously unselected package r-cran-rappdirs. 1309s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 1309s Unpacking r-cran-rappdirs (0.3.3-1) ... 1309s Selecting previously unselected package r-cran-sass. 1310s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 1310s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 1310s Selecting previously unselected package r-cran-bslib. 1310s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 1310s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 1310s Selecting previously unselected package r-cran-cairo. 1310s Preparing to unpack .../229-r-cran-cairo_1.6-2-1_arm64.deb ... 1310s Unpacking r-cran-cairo (1.6-2-1) ... 1310s Selecting previously unselected package r-cran-ps. 1311s Preparing to unpack .../230-r-cran-ps_1.7.6-1_arm64.deb ... 1311s Unpacking r-cran-ps (1.7.6-1) ... 1311s Selecting previously unselected package r-cran-processx. 1311s Preparing to unpack .../231-r-cran-processx_3.8.3-1_arm64.deb ... 1311s Unpacking r-cran-processx (3.8.3-1) ... 1311s Selecting previously unselected package r-cran-callr. 1311s Preparing to unpack .../232-r-cran-callr_3.7.3-2_all.deb ... 1311s Unpacking r-cran-callr (3.7.3-2) ... 1311s Selecting previously unselected package r-cran-cluster. 1311s Preparing to unpack .../233-r-cran-cluster_2.1.6-1_arm64.deb ... 1311s Unpacking r-cran-cluster (2.1.6-1) ... 1311s Selecting previously unselected package r-cran-clue. 1311s Preparing to unpack .../234-r-cran-clue_0.3-65-1_arm64.deb ... 1311s Unpacking r-cran-clue (0.3-65-1) ... 1311s Selecting previously unselected package r-cran-codetools. 1311s Preparing to unpack .../235-r-cran-codetools_0.2-19-1_all.deb ... 1311s Unpacking r-cran-codetools (0.2-19-1) ... 1311s Selecting previously unselected package r-cran-collapse. 1311s Preparing to unpack .../236-r-cran-collapse_2.0.10-1_arm64.deb ... 1311s Unpacking r-cran-collapse (2.0.10-1) ... 1312s Selecting previously unselected package r-cran-colorspace. 1312s Preparing to unpack .../237-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 1312s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 1312s Selecting previously unselected package r-cran-commonmark. 1312s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 1312s Unpacking r-cran-commonmark (1.9.1-1) ... 1312s Selecting previously unselected package r-cran-lazyeval. 1312s Preparing to unpack .../239-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 1312s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 1312s Selecting previously unselected package r-cran-rex. 1312s Preparing to unpack .../240-r-cran-rex_1.2.1-1_all.deb ... 1312s Unpacking r-cran-rex (1.2.1-1) ... 1312s Selecting previously unselected package r-cran-curl. 1312s Preparing to unpack .../241-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 1312s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 1312s Selecting previously unselected package r-cran-openssl. 1313s Preparing to unpack .../242-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 1313s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 1313s Selecting previously unselected package r-cran-httr. 1313s Preparing to unpack .../243-r-cran-httr_1.4.7+dfsg-1_all.deb ... 1313s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 1313s Selecting previously unselected package r-cran-crayon. 1313s Preparing to unpack .../244-r-cran-crayon_1.5.2-1_all.deb ... 1313s Unpacking r-cran-crayon (1.5.2-1) ... 1313s Selecting previously unselected package r-cran-yaml. 1313s Preparing to unpack .../245-r-cran-yaml_2.3.8-1_arm64.deb ... 1313s Unpacking r-cran-yaml (2.3.8-1) ... 1313s Selecting previously unselected package r-cran-covr. 1313s Preparing to unpack .../246-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 1313s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 1313s Selecting previously unselected package r-cran-cpp11. 1313s Preparing to unpack .../247-r-cran-cpp11_0.4.7-1_all.deb ... 1313s Unpacking r-cran-cpp11 (0.4.7-1) ... 1314s Selecting previously unselected package r-cran-deldir. 1314s Preparing to unpack .../248-r-cran-deldir_2.0-4-1_arm64.deb ... 1314s Unpacking r-cran-deldir (2.0-4-1) ... 1314s Selecting previously unselected package r-cran-desc. 1314s Preparing to unpack .../249-r-cran-desc_1.4.3-1_all.deb ... 1314s Unpacking r-cran-desc (1.4.3-1) ... 1314s Selecting previously unselected package r-cran-diffobj. 1314s Preparing to unpack .../250-r-cran-diffobj_0.3.5-1_arm64.deb ... 1314s Unpacking r-cran-diffobj (0.3.5-1) ... 1314s Selecting previously unselected package r-cran-evaluate. 1314s Preparing to unpack .../251-r-cran-evaluate_0.23-1_all.deb ... 1314s Unpacking r-cran-evaluate (0.23-1) ... 1314s Selecting previously unselected package r-cran-farver. 1314s Preparing to unpack .../252-r-cran-farver_2.1.1-1_arm64.deb ... 1314s Unpacking r-cran-farver (2.1.1-1) ... 1314s Selecting previously unselected package r-cran-fnn. 1315s Preparing to unpack .../253-r-cran-fnn_1.1.4-1_arm64.deb ... 1315s Unpacking r-cran-fnn (1.1.4-1) ... 1315s Selecting previously unselected package r-cran-fontawesome. 1315s Preparing to unpack .../254-r-cran-fontawesome_0.5.2-1_all.deb ... 1315s Unpacking r-cran-fontawesome (0.5.2-1) ... 1315s Selecting previously unselected package r-cran-formula. 1315s Preparing to unpack .../255-r-cran-formula_1.2-5-1_all.deb ... 1315s Unpacking r-cran-formula (1.2-5-1) ... 1315s Selecting previously unselected package r-cran-globals. 1315s Preparing to unpack .../256-r-cran-globals_0.16.2-1_all.deb ... 1315s Unpacking r-cran-globals (0.16.2-1) ... 1315s Selecting previously unselected package r-cran-listenv. 1315s Preparing to unpack .../257-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 1315s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 1315s Selecting previously unselected package r-cran-parallelly. 1315s Preparing to unpack .../258-r-cran-parallelly_1.37.1-1_arm64.deb ... 1315s Unpacking r-cran-parallelly (1.37.1-1) ... 1315s Selecting previously unselected package r-cran-future. 1317s Preparing to unpack .../259-r-cran-future_1.33.1+dfsg-1_all.deb ... 1317s Unpacking r-cran-future (1.33.1+dfsg-1) ... 1317s Selecting previously unselected package r-cran-future.apply. 1317s Preparing to unpack .../260-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 1317s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 1317s Selecting previously unselected package r-cran-gtable. 1317s Preparing to unpack .../261-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 1317s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 1317s Selecting previously unselected package r-cran-isoband. 1317s Preparing to unpack .../262-r-cran-isoband_0.2.7-1_arm64.deb ... 1317s Unpacking r-cran-isoband (0.2.7-1) ... 1317s Selecting previously unselected package r-cran-lattice. 1317s Preparing to unpack .../263-r-cran-lattice_0.22-5-1_arm64.deb ... 1317s Unpacking r-cran-lattice (0.22-5-1) ... 1317s Selecting previously unselected package r-cran-nlme. 1317s Preparing to unpack .../264-r-cran-nlme_3.1.164-1_arm64.deb ... 1317s Unpacking r-cran-nlme (3.1.164-1) ... 1317s Selecting previously unselected package r-cran-matrix. 1317s Preparing to unpack .../265-r-cran-matrix_1.6-5-1_arm64.deb ... 1317s Unpacking r-cran-matrix (1.6-5-1) ... 1317s Selecting previously unselected package r-cran-mgcv. 1317s Preparing to unpack .../266-r-cran-mgcv_1.9-1-1_arm64.deb ... 1317s Unpacking r-cran-mgcv (1.9-1-1) ... 1317s Selecting previously unselected package r-cran-labeling. 1317s Preparing to unpack .../267-r-cran-labeling_0.4.3-1_all.deb ... 1317s Unpacking r-cran-labeling (0.4.3-1) ... 1317s Selecting previously unselected package r-cran-munsell. 1317s Preparing to unpack .../268-r-cran-munsell_0.5.0-2build1_all.deb ... 1317s Unpacking r-cran-munsell (0.5.0-2build1) ... 1317s Selecting previously unselected package r-cran-rcolorbrewer. 1317s Preparing to unpack .../269-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 1317s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 1317s Selecting previously unselected package r-cran-viridislite. 1317s Preparing to unpack .../270-r-cran-viridislite_0.4.2-2_all.deb ... 1317s Unpacking r-cran-viridislite (0.4.2-2) ... 1317s Selecting previously unselected package r-cran-scales. 1317s Preparing to unpack .../271-r-cran-scales_1.3.0-1_all.deb ... 1317s Unpacking r-cran-scales (1.3.0-1) ... 1318s Selecting previously unselected package r-cran-ggplot2. 1318s Preparing to unpack .../272-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 1318s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 1318s Selecting previously unselected package r-cran-tweenr. 1318s Preparing to unpack .../273-r-cran-tweenr_2.0.2-1_arm64.deb ... 1318s Unpacking r-cran-tweenr (2.0.2-1) ... 1319s Selecting previously unselected package r-cran-polyclip. 1319s Preparing to unpack .../274-r-cran-polyclip_1.10-6-1_arm64.deb ... 1319s Unpacking r-cran-polyclip (1.10-6-1) ... 1319s Selecting previously unselected package r-cran-systemfonts. 1319s Preparing to unpack .../275-r-cran-systemfonts_1.0.5-1_arm64.deb ... 1319s Unpacking r-cran-systemfonts (1.0.5-1) ... 1319s Selecting previously unselected package r-cran-rcppeigen. 1319s Preparing to unpack .../276-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 1319s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 1320s Selecting previously unselected package r-cran-ggforce. 1320s Preparing to unpack .../277-r-cran-ggforce_0.4.1-1_arm64.deb ... 1320s Unpacking r-cran-ggforce (0.4.1-1) ... 1320s Selecting previously unselected package r-cran-stringi. 1320s Preparing to unpack .../278-r-cran-stringi_1.8.3-1_arm64.deb ... 1320s Unpacking r-cran-stringi (1.8.3-1) ... 1320s Selecting previously unselected package r-cran-stringr. 1320s Preparing to unpack .../279-r-cran-stringr_1.5.1-1_all.deb ... 1320s Unpacking r-cran-stringr (1.5.1-1) ... 1320s Selecting previously unselected package r-cran-ggthemes. 1320s Preparing to unpack .../280-r-cran-ggthemes_5.1.0-1_all.deb ... 1320s Unpacking r-cran-ggthemes (5.1.0-1) ... 1320s Selecting previously unselected package r-cran-goftest. 1320s Preparing to unpack .../281-r-cran-goftest_1.2-3-1_arm64.deb ... 1320s Unpacking r-cran-goftest (1.2-3-1) ... 1320s Selecting previously unselected package r-cran-gridextra. 1320s Preparing to unpack .../282-r-cran-gridextra_2.3-3build1_all.deb ... 1320s Unpacking r-cran-gridextra (2.3-3build1) ... 1321s Selecting previously unselected package r-cran-xfun. 1321s Preparing to unpack .../283-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 1321s Unpacking r-cran-xfun (0.41+dfsg-1) ... 1321s Selecting previously unselected package r-cran-highr. 1321s Preparing to unpack .../284-r-cran-highr_0.10+dfsg-1_all.deb ... 1321s Unpacking r-cran-highr (0.10+dfsg-1) ... 1321s Selecting previously unselected package r-cran-later. 1321s Preparing to unpack .../285-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 1321s Unpacking r-cran-later (1.3.2+dfsg-1) ... 1321s Selecting previously unselected package r-cran-promises. 1321s Preparing to unpack .../286-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 1321s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 1321s Selecting previously unselected package r-cran-httpuv. 1321s Preparing to unpack .../287-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 1321s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 1321s Selecting previously unselected package r-cran-intervals. 1321s Preparing to unpack .../288-r-cran-intervals_0.15.4-1_arm64.deb ... 1321s Unpacking r-cran-intervals (0.15.4-1) ... 1322s Selecting previously unselected package libjs-mathjax. 1322s Preparing to unpack .../289-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1322s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1326s Selecting previously unselected package r-cran-knitr. 1326s Preparing to unpack .../290-r-cran-knitr_1.45+dfsg-1_all.deb ... 1326s Unpacking r-cran-knitr (1.45+dfsg-1) ... 1326s Selecting previously unselected package r-cran-zoo. 1326s Preparing to unpack .../291-r-cran-zoo_1.8-12-2_arm64.deb ... 1326s Unpacking r-cran-zoo (1.8-12-2) ... 1326s Selecting previously unselected package r-cran-lmtest. 1326s Preparing to unpack .../292-r-cran-lmtest_0.9.40-1_arm64.deb ... 1326s Unpacking r-cran-lmtest (0.9.40-1) ... 1326s Selecting previously unselected package r-cran-lwgeom. 1326s Preparing to unpack .../293-r-cran-lwgeom_0.2-13-3_arm64.deb ... 1326s Unpacking r-cran-lwgeom (0.2-13-3) ... 1326s Selecting previously unselected package r-cran-maps. 1326s Preparing to unpack .../294-r-cran-maps_3.4.2-1_arm64.deb ... 1326s Unpacking r-cran-maps (3.4.2-1) ... 1327s Selecting previously unselected package r-cran-mapdata. 1327s Preparing to unpack .../295-r-cran-mapdata_2.3.1-1_arm64.deb ... 1327s Unpacking r-cran-mapdata (2.3.1-1) ... 1328s Selecting previously unselected package r-cran-misctools. 1328s Preparing to unpack .../296-r-cran-misctools_0.6-28-1_all.deb ... 1328s Unpacking r-cran-misctools (0.6-28-1) ... 1328s Selecting previously unselected package r-cran-sandwich. 1328s Preparing to unpack .../297-r-cran-sandwich_3.1-0-1_all.deb ... 1328s Unpacking r-cran-sandwich (3.1-0-1) ... 1329s Selecting previously unselected package r-cran-maxlik. 1329s Preparing to unpack .../298-r-cran-maxlik_1.5-2-1_all.deb ... 1329s Unpacking r-cran-maxlik (1.5-2-1) ... 1329s Selecting previously unselected package r-cran-rnetcdf. 1329s Preparing to unpack .../299-r-cran-rnetcdf_2.9-1-1_arm64.deb ... 1329s Unpacking r-cran-rnetcdf (2.9-1-1) ... 1329s Selecting previously unselected package r-cran-tidyr. 1329s Preparing to unpack .../300-r-cran-tidyr_1.3.1-1_arm64.deb ... 1329s Unpacking r-cran-tidyr (1.3.1-1) ... 1329s Selecting previously unselected package r-cran-ncmeta. 1329s Preparing to unpack .../301-r-cran-ncmeta_0.3.6-1_all.deb ... 1329s Unpacking r-cran-ncmeta (0.3.6-1) ... 1329s Selecting previously unselected package r-cran-stars. 1329s Preparing to unpack .../302-r-cran-stars_0.6-4-1_all.deb ... 1329s Unpacking r-cran-stars (0.6-4-1) ... 1330s Selecting previously unselected package r-cran-ncdfgeom. 1330s Preparing to unpack .../303-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 1330s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 1330s Selecting previously unselected package r-cran-pbapply. 1330s Preparing to unpack .../304-r-cran-pbapply_1.7-2-1_all.deb ... 1330s Unpacking r-cran-pbapply (1.7-2-1) ... 1331s Selecting previously unselected package r-cran-pcict. 1331s Preparing to unpack .../305-r-cran-pcict_0.5-4.4-1_arm64.deb ... 1331s Unpacking r-cran-pcict (0.5-4.4-1) ... 1331s Selecting previously unselected package r-cran-pkgbuild. 1331s Preparing to unpack .../306-r-cran-pkgbuild_1.4.3-1_all.deb ... 1331s Unpacking r-cran-pkgbuild (1.4.3-1) ... 1331s Selecting previously unselected package r-cran-rprojroot. 1331s Preparing to unpack .../307-r-cran-rprojroot_2.0.4-1_all.deb ... 1331s Unpacking r-cran-rprojroot (2.0.4-1) ... 1331s Selecting previously unselected package r-cran-pkgload. 1331s Preparing to unpack .../308-r-cran-pkgload_1.3.4-1_all.deb ... 1331s Unpacking r-cran-pkgload (1.3.4-1) ... 1331s Selecting previously unselected package r-cran-rbibutils. 1331s Preparing to unpack .../309-r-cran-rbibutils_2.2.16-1_arm64.deb ... 1331s Unpacking r-cran-rbibutils (2.2.16-1) ... 1331s Selecting previously unselected package r-cran-rdpack. 1332s Preparing to unpack .../310-r-cran-rdpack_2.6-1_all.deb ... 1332s Unpacking r-cran-rdpack (2.6-1) ... 1332s Selecting previously unselected package r-cran-plm. 1332s Preparing to unpack .../311-r-cran-plm_2.6-3-1_all.deb ... 1332s Unpacking r-cran-plm (2.6-3-1) ... 1332s Selecting previously unselected package r-cran-praise. 1332s Preparing to unpack .../312-r-cran-praise_1.0.0-4build1_all.deb ... 1332s Unpacking r-cran-praise (1.0.0-4build1) ... 1332s Selecting previously unselected package r-cran-randomforest. 1332s Preparing to unpack .../313-r-cran-randomforest_4.7-1.1-1_arm64.deb ... 1332s Unpacking r-cran-randomforest (4.7-1.1-1) ... 1332s Selecting previously unselected package r-cran-sp. 1332s Preparing to unpack .../314-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 1332s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 1332s Selecting previously unselected package r-cran-terra. 1333s Preparing to unpack .../315-r-cran-terra_1.7-65-1_arm64.deb ... 1333s Unpacking r-cran-terra (1.7-65-1) ... 1333s Selecting previously unselected package r-cran-raster. 1333s Preparing to unpack .../316-r-cran-raster_3.6-26-1_arm64.deb ... 1333s Unpacking r-cran-raster (3.6-26-1) ... 1333s Selecting previously unselected package r-cran-rematch2. 1333s Preparing to unpack .../317-r-cran-rematch2_2.1.2-2build1_all.deb ... 1333s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 1333s Selecting previously unselected package r-cran-tinytex. 1333s Preparing to unpack .../318-r-cran-tinytex_0.49-1_all.deb ... 1333s Unpacking r-cran-tinytex (0.49-1) ... 1333s Selecting previously unselected package libjs-modernizr. 1333s Preparing to unpack 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.../324-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 1335s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 1335s Selecting previously unselected package r-cran-survival. 1335s Preparing to unpack .../325-r-cran-survival_3.5-8-1_arm64.deb ... 1335s Unpacking r-cran-survival (3.5-8-1) ... 1335s Selecting previously unselected package r-cran-rpart. 1335s Preparing to unpack .../326-r-cran-rpart_4.1.23-1_arm64.deb ... 1335s Unpacking r-cran-rpart (4.1.23-1) ... 1336s Selecting previously unselected package r-cran-xts. 1336s Preparing to unpack .../327-r-cran-xts_0.13.2-1_arm64.deb ... 1336s Unpacking r-cran-xts (0.13.2-1) ... 1336s Selecting previously unselected package r-cran-spacetime. 1336s Preparing to unpack .../328-r-cran-spacetime_1.3-1-1_all.deb ... 1336s Unpacking r-cran-spacetime (1.3-1-1) ... 1336s Selecting previously unselected package r-cran-spatstat.utils. 1336s Preparing to unpack .../329-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 1336s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 1336s Selecting previously unselected package r-cran-spatstat.data. 1336s Preparing to unpack .../330-r-cran-spatstat.data_3.0-4-1_all.deb ... 1336s Unpacking r-cran-spatstat.data (3.0-4-1) ... 1336s Selecting previously unselected package r-cran-spatstat.geom. 1336s Preparing to unpack .../331-r-cran-spatstat.geom_3.2-8-1_arm64.deb ... 1336s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 1337s Selecting previously unselected package r-cran-spatstat.random. 1337s Preparing to unpack .../332-r-cran-spatstat.random_3.2-2-1_arm64.deb ... 1337s Unpacking r-cran-spatstat.random (3.2-2-1) ... 1337s Selecting previously unselected package r-cran-tensor. 1337s Preparing to unpack .../333-r-cran-tensor_1.5-4_all.deb ... 1337s Unpacking r-cran-tensor (1.5-4) ... 1337s Selecting previously unselected package r-cran-spatstat.sparse. 1337s Preparing to unpack .../334-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 1337s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 1337s Selecting previously unselected package r-cran-spatstat.explore. 1337s Preparing to unpack .../335-r-cran-spatstat.explore_3.2-5-1_arm64.deb ... 1337s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 1337s Selecting previously unselected package r-cran-spatstat.model. 1337s Preparing to unpack .../336-r-cran-spatstat.model_3.2-8-1_arm64.deb ... 1337s Unpacking r-cran-spatstat.model (3.2-8-1) ... 1337s Selecting previously unselected package r-cran-spatstat.linnet. 1338s Preparing to unpack .../337-r-cran-spatstat.linnet_3.1-3-1_arm64.deb ... 1338s Unpacking r-cran-spatstat.linnet (3.1-3-1) ... 1338s Selecting previously unselected package r-cran-spatstat. 1338s Preparing to unpack .../338-r-cran-spatstat_3.0-7-1_arm64.deb ... 1338s Unpacking r-cran-spatstat (3.0-7-1) ... 1338s Selecting previously unselected package r-cran-waldo. 1338s Preparing to unpack .../339-r-cran-waldo_0.5.2-1build1_all.deb ... 1338s Unpacking r-cran-waldo (0.5.2-1build1) ... 1338s Selecting previously unselected package 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up r-cran-diffobj (0.3.5-1) ... 1347s Setting up r-cran-maps (3.4.2-1) ... 1347s Setting up r-cran-rlang (1.1.3-1) ... 1347s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 1347s Setting up littler (0.3.19-1) ... 1347s Setting up r-cran-xfun (0.41+dfsg-1) ... 1347s Setting up r-cran-sys (3.4.2-1) ... 1347s Setting up r-cran-withr (2.5.0-1) ... 1347s Setting up r-cran-processx (3.8.3-1) ... 1347s Setting up r-cran-mime (0.12-1) ... 1347s Setting up r-cran-praise (1.0.0-4build1) ... 1347s Setting up r-cran-generics (0.1.3-1) ... 1347s Setting up r-cran-base64enc (0.1-3-3) ... 1347s Setting up r-cran-abind (1.4-5-2) ... 1347s Setting up r-cran-s2 (1.1.6-1) ... 1347s Setting up r-cran-digest (0.6.34-1) ... 1347s Setting up r-cran-yaml (2.3.8-1) ... 1347s Setting up r-cran-evaluate (0.23-1) ... 1347s Setting up r-cran-dbi (1.2.2-1) ... 1347s Setting up r-cran-highr (0.10+dfsg-1) ... 1347s Setting up r-cran-fansi (1.0.5-1) ... 1347s Setting up r-cran-pcict (0.5-4.4-1) ... 1347s Setting up 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link group f77) doesn't exist 1348s Setting up r-cran-rbibutils (2.2.16-1) ... 1348s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 1348s Setting up r-cran-rprojroot (2.0.4-1) ... 1348s Setting up r-cran-fnn (1.1.4-1) ... 1348s Setting up r-cran-deldir (2.0-4-1) ... 1348s Setting up r-cran-goftest (1.2-3-1) ... 1348s Setting up r-cran-randomforest (4.7-1.1-1) ... 1348s Setting up r-cran-askpass (1.2.0-1) ... 1348s Setting up r-cran-fastmap (1.1.1-1) ... 1348s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 1348s Setting up r-cran-rnetcdf (2.9-1-1) ... 1348s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 1348s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 1348s Setting up r-cran-utf8 (1.2.4-1) ... 1348s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 1348s Setting up r-cran-parallelly (1.37.1-1) ... 1348s Setting up r-cran-stringi (1.8.3-1) ... 1348s Setting up r-cran-rex (1.2.1-1) ... 1348s Setting up r-cran-cpp11 (0.4.7-1) ... 1348s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 1348s Setting up r-cran-isoband (0.2.7-1) ... 1348s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 1348s Setting up r-cran-zoo (1.8-12-2) ... 1348s Setting up r-cran-units (0.8-5+dfsg-1) ... 1348s Setting up r-cran-later (1.3.2+dfsg-1) ... 1348s Setting up r-cran-matrix (1.6-5-1) ... 1348s Setting up r-cran-spatstat.sparse (3.0-3-1) ... 1348s Setting up r-cran-tinytex (0.49-1) ... 1348s Setting up r-cran-kernsmooth (2.23-22-1) ... 1348s Setting up r-cran-knitr (1.45+dfsg-1) ... 1348s Setting up r-cran-mgcv (1.9-1-1) ... 1348s Setting up g++ (4:13.2.0-7ubuntu1) ... 1348s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1348s Setting up r-cran-cachem (1.0.8-1) ... 1348s Setting up r-cran-lmtest (0.9.40-1) ... 1348s Setting up build-essential (12.10ubuntu1) ... 1348s Setting up r-cran-globals (0.16.2-1) ... 1348s Setting up r-cran-vctrs (0.6.5-1) ... 1348s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 1348s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 1348s Setting up r-cran-ellipsis (0.3.2-2) ... 1348s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 1348s Setting up r-base-dev (4.3.2-1build1) ... 1348s Setting up r-cran-misctools (0.6-28-1) ... 1348s Setting up r-cran-stringr (1.5.1-1) ... 1348s Setting up r-cran-class (7.3-22-2) ... 1348s Setting up r-cran-callr (3.7.3-2) ... 1348s Setting up r-cran-desc (1.4.3-1) ... 1348s Setting up r-cran-munsell (0.5.0-2build1) ... 1348s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 1348s Setting up r-cran-sandwich (3.1-0-1) ... 1348s Setting up r-cran-survival (3.5-8-1) ... 1348s Setting up r-cran-xts (0.13.2-1) ... 1348s Setting up r-cran-rdpack (2.6-1) ... 1348s Setting up r-cran-tweenr (2.0.2-1) ... 1348s Setting up r-cran-future (1.33.1+dfsg-1) ... 1348s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 1348s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 1348s Setting up r-cran-systemfonts (1.0.5-1) ... 1348s Setting up r-cran-httr (1.4.7+dfsg-1) ... 1348s Setting up r-cran-gridextra (2.3-3build1) ... 1348s Setting up r-cran-scales (1.3.0-1) ... 1348s Setting up r-cran-memoise (2.0.1-1) ... 1348s Setting up r-cran-covr (3.6.4+dfsg-1) ... 1348s Setting up r-cran-promises (1.2.1+dfsg-1) ... 1348s Setting up r-cran-purrr (1.0.2-1) ... 1348s Setting up r-cran-e1071 (1.7-14-1) ... 1348s Setting up r-cran-spatstat.data (3.0-4-1) ... 1348s Setting up r-cran-maxlik (1.5-2-1) ... 1348s Setting up r-cran-spacetime (1.3-1-1) ... 1348s Setting up r-cran-htmltools (0.5.7-1) ... 1348s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1348s Setting up r-cran-spatstat.geom (3.2-8-1) ... 1348s Setting up r-cran-pkgbuild (1.4.3-1) ... 1348s Setting up r-cran-sass (0.4.8+dfsg-1) ... 1348s Setting up r-cran-dplyr (1.1.4-1) ... 1348s Setting up r-cran-pkgload (1.3.4-1) ... 1348s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 1348s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 1348s Setting up r-cran-rematch2 (2.1.2-2build1) ... 1348s Setting up r-cran-rpart (4.1.23-1) ... 1348s Setting up r-cran-fontawesome (0.5.2-1) ... 1348s Setting up r-cran-spatstat.random (3.2-2-1) ... 1348s Setting up r-cran-plm (2.6-3-1) ... 1348s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1348s Setting up r-cran-viridis (0.6.5-1) ... 1348s Setting up r-cran-classint (0.4-10+dfsg-1) ... 1348s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 1348s Setting up r-cran-spatstat.explore (3.2-5-1) ... 1348s Setting up r-cran-ggthemes (5.1.0-1) ... 1348s Setting up r-cran-waldo (0.5.2-1build1) ... 1348s Setting up r-cran-tidyr (1.3.1-1) ... 1348s Setting up r-cran-ggforce (0.4.1-1) ... 1348s Setting up r-cran-spatstat.model (3.2-8-1) ... 1348s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 1348s Setting up r-cran-testthat (3.2.1-1) ... 1348s Setting up r-cran-ncmeta (0.3.6-1) ... 1348s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 1348s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 1348s Setting up r-cran-spatstat (3.0-7-1) ... 1348s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 1348s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 1348s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 1348s Setting up libgdal34:arm64 (3.8.4+dfsg-1) ... 1348s Setting up r-cran-terra (1.7-65-1) ... 1348s Setting up r-cran-sf (1.0-15+dfsg-1) ... 1348s Setting up r-cran-stars (0.6-4-1) ... 1348s Setting up r-cran-areal (0.1.8+dfsg-2) ... 1348s Setting up r-cran-raster (3.6-26-1) ... 1348s Setting up r-cran-lwgeom (0.2-13-3) ... 1348s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 1348s Setting up autopkgtest-satdep (0) ... 1348s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1348s Processing triggers for man-db (2.12.0-3) ... 1350s Processing triggers for install-info (7.1-3) ... 1387s (Reading database ... 102896 files and directories currently installed.) 1387s Removing autopkgtest-satdep (0) ... 1392s autopkgtest [04:07:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1392s autopkgtest [04:07:28]: test pkg-r-autopkgtest: [----------------------- 1393s Test: Try to load the R library stars 1393s 1393s R version 4.3.2 (2023-10-31) -- "Eye Holes" 1393s Copyright (C) 2023 The R Foundation for Statistical Computing 1393s Platform: aarch64-unknown-linux-gnu (64-bit) 1393s 1393s R is free software and comes with ABSOLUTELY NO WARRANTY. 1393s You are welcome to redistribute it under certain conditions. 1393s Type 'license()' or 'licence()' for distribution details. 1393s 1393s R is a collaborative project with many contributors. 1393s Type 'contributors()' for more information and 1393s 'citation()' on how to cite R or R packages in publications. 1393s 1393s Type 'demo()' for some demos, 'help()' for on-line help, or 1393s 'help.start()' for an HTML browser interface to help. 1393s Type 'q()' to quit R. 1393s 1393s > library('stars') 1393s Loading required package: abind 1393s Loading required package: sf 1397s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 1397s > 1397s > 1397s Other tests are currently unsupported! 1397s They will be progressively added. 1397s autopkgtest [04:07:33]: test pkg-r-autopkgtest: -----------------------] 1398s pkg-r-autopkgtest PASS 1398s autopkgtest [04:07:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1398s autopkgtest [04:07:34]: @@@@@@@@@@@@@@@@@@@@ summary 1398s run-unit-test PASS 1398s pkg-r-autopkgtest PASS 1417s Creating nova instance adt-noble-arm64-r-cran-stars-20240324-034416-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240322.img (UUID 30e11504-94c3-4021-bd9a-a4301970c682)... 1417s Creating nova instance adt-noble-arm64-r-cran-stars-20240324-034416-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240322.img (UUID 30e11504-94c3-4021-bd9a-a4301970c682)...