0s autopkgtest [20:17:07]: starting date and time: 2024-03-16 20:17:07+0000
  0s autopkgtest [20:17:07]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [20:17:07]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bamt9g1f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-squarem --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-15.secgroup --name adt-noble-arm64-r-cran-squarem-20240316-201707-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 99s autopkgtest [20:18:46]: testbed dpkg architecture: arm64
100s autopkgtest [20:18:47]: testbed apt version: 2.7.12
100s autopkgtest [20:18:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup
101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3704 kB]
102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
102s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
102s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
102s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
102s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4012 kB]
102s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
102s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB]
102s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
105s Fetched 9112 kB in 2s (4346 kB/s)
105s Reading package lists...
107s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s Calculating upgrade...
109s The following packages will be REMOVED:
109s   libglib2.0-0 libssl3
109s The following NEW packages will be installed:
109s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
109s The following packages have been kept back:
109s   curl
109s The following packages will be upgraded:
109s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
109s   ubuntu-minimal ubuntu-standard
109s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
109s Need to get 4613 kB of archives.
109s After this operation, 211 kB of additional disk space will be used.
109s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
109s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
109s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
109s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
109s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
109s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
109s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
109s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
109s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
109s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
110s Fetched 4613 kB in 1s (6974 kB/s)
110s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74758 files and directories currently installed.)
110s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
110s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
111s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
111s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
111s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
111s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
111s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
111s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
111s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
111s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
111s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
111s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
111s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
111s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
111s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
111s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
111s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
111s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
111s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
111s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
111s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
111s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
111s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
111s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
111s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
111s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
111s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
111s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
111s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
111s  fwupd depends on libglib2.0-0 (>= 2.79.0).
111s  bolt depends on libglib2.0-0 (>= 2.56.0).
111s 
111s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74758 files and directories currently installed.)
111s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
111s Selecting previously unselected package libglib2.0-0t64:arm64.
111s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74733 files and directories currently installed.)
111s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
111s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
111s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
111s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
111s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
111s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
111s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
111s  wget depends on libssl3 (>= 3.0.0).
111s  u-boot-tools depends on libssl3 (>= 3.0.0).
111s  tnftp depends on libssl3 (>= 3.0.0).
111s  tcpdump depends on libssl3 (>= 3.0.0).
111s  systemd-resolved depends on libssl3 (>= 3.0.0).
111s  systemd depends on libssl3 (>= 3.0.0).
111s  sudo depends on libssl3 (>= 3.0.0).
111s  sbsigntool depends on libssl3 (>= 3.0.0).
111s  rsync depends on libssl3 (>= 3.0.0).
111s  python3-cryptography depends on libssl3 (>= 3.0.0).
111s  openssh-server depends on libssl3 (>= 3.0.10).
111s  openssh-client depends on libssl3 (>= 3.0.10).
111s  mtd-utils depends on libssl3 (>= 3.0.0).
111s  mokutil depends on libssl3 (>= 3.0.0).
111s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
111s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
111s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
111s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
111s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
111s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
111s  libnvme1 depends on libssl3 (>= 3.0.0).
111s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
111s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
111s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
111s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
111s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
111s  kmod depends on libssl3 (>= 3.0.0).
111s  dhcpcd-base depends on libssl3 (>= 3.0.0).
111s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
111s 
111s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74758 files and directories currently installed.)
111s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
111s Selecting previously unselected package libssl3t64:arm64.
111s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74747 files and directories currently installed.)
111s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
111s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
111s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
111s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
111s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
111s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
111s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
111s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
111s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
111s Unpacking ubuntu-minimal (1.536) over (1.535) ...
111s Selecting previously unselected package xdg-user-dirs.
111s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
111s Unpacking xdg-user-dirs (0.18-1) ...
111s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
111s Unpacking ubuntu-standard (1.536) over (1.535) ...
111s Setting up ubuntu-minimal (1.536) ...
111s Setting up xdg-user-dirs (0.18-1) ...
111s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
111s Setting up libtirpc-common (1.3.4+ds-1.1) ...
111s Setting up ubuntu-standard (1.536) ...
111s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
111s No schema files found: doing nothing.
111s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
111s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
111s Setting up openssl (3.0.13-0ubuntu1) ...
111s Setting up readline-common (8.2-3.1) ...
111s Processing triggers for man-db (2.12.0-3) ...
113s Processing triggers for install-info (7.1-3) ...
113s Processing triggers for libc-bin (2.39-0ubuntu2) ...
114s Reading package lists...
114s Building dependency tree...
114s Reading state information...
115s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
116s sh: Attempting to set up Debian/Ubuntu apt sources automatically
116s sh: Distribution appears to be Ubuntu
117s Reading package lists...
117s Building dependency tree...
117s Reading state information...
118s eatmydata is already the newest version (131-1).
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
119s dbus is already the newest version (1.14.10-4ubuntu1).
119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s rng-tools-debian is already the newest version (2.4).
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
121s The following packages will be REMOVED:
121s   cloud-init* python3-configobj* python3-debconf*
122s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
122s After this operation, 3252 kB disk space will be freed.
122s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74774 files and directories currently installed.)
122s Removing cloud-init (24.1.1-0ubuntu1) ...
123s Removing python3-configobj (5.0.8-3) ...
123s Removing python3-debconf (1.5.86) ...
124s Processing triggers for man-db (2.12.0-3) ...
125s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74385 files and directories currently installed.)
125s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
125s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
125s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
125s invoke-rc.d: policy-rc.d denied execution of try-restart.
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
126s linux-generic is already the newest version (6.8.0-11.11+1).
126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
127s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
127s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
127s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
130s Reading package lists...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s autopkgtest [20:19:20]: rebooting testbed after setup commands that affected boot
182s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
190s autopkgtest [20:20:17]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
196s autopkgtest [20:20:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-squarem
200s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-squarem 2021.1-1 (dsc) [2107 B]
200s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-squarem 2021.1-1 (tar) [242 kB]
200s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-squarem 2021.1-1 (diff) [2436 B]
201s gpgv: Signature made Sat Jan 16 17:03:24 2021 UTC
201s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
201s gpgv:                issuer "tille@debian.org"
201s gpgv: Can't check signature: No public key
201s dpkg-source: warning: cannot verify inline signature for ./r-cran-squarem_2021.1-1.dsc: no acceptable signature found
202s autopkgtest [20:20:29]: testing package r-cran-squarem version 2021.1-1
202s autopkgtest [20:20:29]: build not needed
203s autopkgtest [20:20:30]: test run-unit-test: preparing testbed
205s Reading package lists...
205s Building dependency tree...
205s Reading state information...
206s Starting pkgProblemResolver with broken count: 0
206s Starting 2 pkgProblemResolver with broken count: 0
206s Done
207s The following additional packages will be installed:
207s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
207s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
207s   libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
207s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
207s   libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
207s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
207s   libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-setrng r-cran-squarem
207s   unzip x11-common xdg-utils zip
207s Suggested packages:
207s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
207s Recommended packages:
207s   r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
207s   libx11-protocol-perl x11-utils x11-xserver-utils
207s The following NEW packages will be installed:
207s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
207s   fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1
207s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0
207s   libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0
207s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
207s   libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
207s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6
207s   r-base-core r-cran-setrng r-cran-squarem unzip x11-common xdg-utils zip
208s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
208s Need to get 36.8 MB/36.8 MB of archives.
208s After this operation, 75.6 MB of additional disk space will be used.
208s Get:1 /tmp/autopkgtest.S5nSBJ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B]
208s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
208s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
208s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
208s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
208s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
208s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
208s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
208s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
208s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
208s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
208s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
208s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
209s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
209s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
209s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
209s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
209s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
209s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
209s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
209s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
209s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
209s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
209s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
209s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
209s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
209s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
209s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
209s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
209s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
209s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
209s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
209s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
209s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
209s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
209s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
209s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
209s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
209s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
209s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
209s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
209s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
209s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
209s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
209s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
210s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-setrng all 2022.4-1-1 [55.3 kB]
210s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-squarem all 2021.1-1 [179 kB]
215s Preconfiguring packages ...
215s Fetched 36.8 MB in 2s (17.0 MB/s)
215s Selecting previously unselected package fonts-dejavu-mono.
215s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74330 files and directories currently installed.)
215s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
215s Unpacking fonts-dejavu-mono (2.37-8) ...
215s Selecting previously unselected package fonts-dejavu-core.
215s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
215s Unpacking fonts-dejavu-core (2.37-8) ...
215s Selecting previously unselected package fontconfig-config.
216s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
216s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
216s Selecting previously unselected package libfontconfig1:arm64.
216s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
216s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
216s Selecting previously unselected package fontconfig.
216s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
216s Unpacking fontconfig (2.15.0-1ubuntu1) ...
216s Selecting previously unselected package libblas3:arm64.
216s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ...
216s Unpacking libblas3:arm64 (3.12.0-3) ...
216s Selecting previously unselected package libpixman-1-0:arm64.
216s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ...
216s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
216s Selecting previously unselected package libxcb-render0:arm64.
216s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ...
216s Unpacking libxcb-render0:arm64 (1.15-1) ...
216s Selecting previously unselected package libxcb-shm0:arm64.
216s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ...
216s Unpacking libxcb-shm0:arm64 (1.15-1) ...
217s Selecting previously unselected package libxrender1:arm64.
217s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
217s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
217s Selecting previously unselected package libcairo2:arm64.
217s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ...
217s Unpacking libcairo2:arm64 (1.18.0-1) ...
217s Selecting previously unselected package libdatrie1:arm64.
217s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ...
217s Unpacking libdatrie1:arm64 (0.2.13-3) ...
217s Selecting previously unselected package libdeflate0:arm64.
217s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ...
217s Unpacking libdeflate0:arm64 (1.19-1) ...
217s Selecting previously unselected package libgfortran5:arm64.
217s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
217s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
217s Selecting previously unselected package libgomp1:arm64.
217s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
217s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
217s Selecting previously unselected package libgraphite2-3:arm64.
217s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ...
217s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
217s Selecting previously unselected package libharfbuzz0b:arm64.
217s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ...
217s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
217s Selecting previously unselected package x11-common.
217s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ...
217s Unpacking x11-common (1:7.7+23ubuntu2) ...
217s Selecting previously unselected package libice6:arm64.
217s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ...
217s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
217s Selecting previously unselected package libjpeg-turbo8:arm64.
218s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
218s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
218s Selecting previously unselected package libjpeg8:arm64.
218s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ...
218s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
218s Selecting previously unselected package liblapack3:arm64.
218s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ...
218s Unpacking liblapack3:arm64 (3.12.0-3) ...
218s Selecting previously unselected package liblerc4:arm64.
218s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
218s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
218s Selecting previously unselected package libthai-data.
218s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ...
218s Unpacking libthai-data (0.1.29-2) ...
218s Selecting previously unselected package libthai0:arm64.
218s Preparing to unpack .../24-libthai0_0.1.29-2_arm64.deb ...
218s Unpacking libthai0:arm64 (0.1.29-2) ...
218s Selecting previously unselected package libpango-1.0-0:arm64.
218s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
218s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
218s Selecting previously unselected package libpangoft2-1.0-0:arm64.
218s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
218s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
218s Selecting previously unselected package libpangocairo-1.0-0:arm64.
218s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
218s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
218s Selecting previously unselected package libpaper1:arm64.
218s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ...
218s Unpacking libpaper1:arm64 (1.1.29) ...
218s Selecting previously unselected package libpaper-utils.
218s Preparing to unpack .../29-libpaper-utils_1.1.29_arm64.deb ...
218s Unpacking libpaper-utils (1.1.29) ...
218s Selecting previously unselected package libsharpyuv0:arm64.
218s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ...
218s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
218s Selecting previously unselected package libsm6:arm64.
218s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ...
218s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
218s Selecting previously unselected package libtcl8.6:arm64.
218s Preparing to unpack .../32-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
218s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
218s Selecting previously unselected package libjbig0:arm64.
218s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
218s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
218s Selecting previously unselected package libwebp7:arm64.
218s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ...
218s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
219s Selecting previously unselected package libtiff6:arm64.
219s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
219s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
219s Selecting previously unselected package libxft2:arm64.
219s Preparing to unpack .../36-libxft2_2.3.6-1_arm64.deb ...
219s Unpacking libxft2:arm64 (2.3.6-1) ...
219s Selecting previously unselected package libxss1:arm64.
219s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build2_arm64.deb ...
219s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
219s Selecting previously unselected package libtk8.6:arm64.
219s Preparing to unpack .../38-libtk8.6_8.6.13-2_arm64.deb ...
219s Unpacking libtk8.6:arm64 (8.6.13-2) ...
219s Selecting previously unselected package libxt6:arm64.
219s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ...
219s Unpacking libxt6:arm64 (1:1.2.1-1.1) ...
219s Selecting previously unselected package zip.
219s Preparing to unpack .../40-zip_3.0-13_arm64.deb ...
219s Unpacking zip (3.0-13) ...
219s Selecting previously unselected package unzip.
219s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ...
219s Unpacking unzip (6.0-28ubuntu3) ...
219s Selecting previously unselected package xdg-utils.
219s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
219s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
219s Selecting previously unselected package r-base-core.
219s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ...
219s Unpacking r-base-core (4.3.2-1build1) ...
219s Selecting previously unselected package r-cran-setrng.
219s Preparing to unpack .../44-r-cran-setrng_2022.4-1-1_all.deb ...
219s Unpacking r-cran-setrng (2022.4-1-1) ...
219s Selecting previously unselected package r-cran-squarem.
219s Preparing to unpack .../45-r-cran-squarem_2021.1-1_all.deb ...
219s Unpacking r-cran-squarem (2021.1-1) ...
220s Selecting previously unselected package autopkgtest-satdep.
220s Preparing to unpack .../46-1-autopkgtest-satdep.deb ...
220s Unpacking autopkgtest-satdep (0) ...
220s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
220s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
220s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
220s Setting up libpaper1:arm64 (1.1.29) ...
220s 
220s Creating config file /etc/papersize with new version
220s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
220s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
220s Setting up libdatrie1:arm64 (0.2.13-3) ...
220s Setting up libxcb-render0:arm64 (1.15-1) ...
220s Setting up unzip (6.0-28ubuntu3) ...
220s Setting up x11-common (1:7.7+23ubuntu2) ...
221s Setting up libdeflate0:arm64 (1.19-1) ...
221s Setting up libxcb-shm0:arm64 (1.15-1) ...
221s Setting up libpaper-utils (1.1.29) ...
221s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
221s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
221s Setting up zip (3.0-13) ...
221s Setting up libblas3:arm64 (3.12.0-3) ...
221s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
221s Setting up fonts-dejavu-mono (2.37-8) ...
221s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
221s Setting up fonts-dejavu-core (2.37-8) ...
221s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
221s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
221s Setting up libwebp7:arm64 (1.3.2-0.4) ...
221s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
221s Setting up libthai-data (0.1.29-2) ...
221s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
221s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
221s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
221s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
221s Setting up libice6:arm64 (2:1.0.10-1build2) ...
221s Setting up liblapack3:arm64 (3.12.0-3) ...
221s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
221s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
221s Setting up libthai0:arm64 (0.1.29-2) ...
221s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
221s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
221s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
221s Setting up fontconfig (2.15.0-1ubuntu1) ...
223s Regenerating fonts cache... done.
223s Setting up libxft2:arm64 (2.3.6-1) ...
223s Setting up libtk8.6:arm64 (8.6.13-2) ...
223s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
223s Setting up libcairo2:arm64 (1.18.0-1) ...
223s Setting up libxt6:arm64 (1:1.2.1-1.1) ...
223s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
223s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
223s Setting up r-base-core (4.3.2-1build1) ...
224s 
224s Creating config file /etc/R/Renviron with new version
224s Setting up r-cran-squarem (2021.1-1) ...
224s Setting up r-cran-setrng (2022.4-1-1) ...
224s Setting up autopkgtest-satdep (0) ...
224s Processing triggers for man-db (2.12.0-3) ...
225s Processing triggers for install-info (7.1-3) ...
226s Processing triggers for libc-bin (2.39-0ubuntu2) ...
230s (Reading database ... 76403 files and directories currently installed.)
230s Removing autopkgtest-satdep (0) ...
231s autopkgtest [20:20:58]: test run-unit-test: [-----------------------
231s BEGIN TEST Hasselblad1969.R
231s 
231s R version 4.3.2 (2023-10-31) -- "Eye Holes"
231s Copyright (C) 2023 The R Foundation for Statistical Computing
231s Platform: aarch64-unknown-linux-gnu (64-bit)
231s 
231s R is free software and comes with ABSOLUTELY NO WARRANTY.
231s You are welcome to redistribute it under certain conditions.
231s Type 'license()' or 'licence()' for distribution details.
231s 
231s R is a collaborative project with many contributors.
231s Type 'contributors()' for more information and
231s 'citation()' on how to cite R or R packages in publications.
231s 
231s Type 'demo()' for some demos, 'help()' for on-line help, or
231s 'help.start()' for an HTML browser interface to help.
231s Type 'q()' to quit R.
231s 
231s > require("SQUAREM")  # master funcion and the 4 different SQUAREM algorithms
231s Loading required package: SQUAREM
231s > require("setRNG")   # needed to reproduce the same results
231s Loading required package: setRNG
231s > 
231s > # data for Poisson mixture estimation  from Hasselblad (JASA 1969)
231s > poissmix.dat <- data.frame(death=0:9, freq=c(162,267,271,185,111,61,27,8,3,1))
231s > 
231s > y <- poissmix.dat$freq
231s > tol <- 1.e-08
231s > 
231s > # generate a random initial guess for 3 parameters
231s > setRNG(list(kind="Wichmann-Hill", normal.kind="Box-Muller", seed=123))
231s > p0 <- c(runif(1),runif(2,0,4))    
231s > 
231s > # fixptfn = function that computes a single update of fixed-point iteration
231s > # objfn = underlying objective function that needs to be maximized
231s > #
231s > 
231s > # EM algorithm
231s > 
231s > poissmix.em <- function(p,y) {
231s + # The fixed point mapping giving a single E and M step of the EM algorithm
231s + # 
231s + pnew <- rep(NA,3)
231s + i <- 0:(length(y)-1)
231s + zi <- p[1]*exp(-p[2])*p[2]^i / (p[1]*exp(-p[2])*p[2]^i + (1 - p[1])*exp(-p[3])*p[3]^i)
231s + pnew[1] <- sum(y*zi)/sum(y)
231s + pnew[2] <- sum(y*i*zi)/sum(y*zi)
231s + pnew[3] <- sum(y*i*(1-zi))/sum(y*(1-zi))
231s + p <- pnew
231s + return(pnew)
231s + }
231s > 
231s > poissmix.loglik <- function(p,y) {
231s + # Objective function whose local minimum is a fixed point \
231s + # negative log-likelihood of binary poisson mixture
231s + i <- 0:(length(y)-1)
231s + loglik <- y*log(p[1]*exp(-p[2])*p[2]^i/exp(lgamma(i+1)) + 
231s + 		(1 - p[1])*exp(-p[3])*p[3]^i/exp(lgamma(i+1)))
231s + return ( -sum(loglik) )
231s + }
231s > 
231s > good.tol <- 1.e-05
231s > 
231s > good <-  c(0.6401146029910, 2.6634043566619, 1.2560951012662)
231s > 
231s >   pf1 <- fpiter(p=p0, y=y, fixptfn=poissmix.em, objfn=poissmix.loglik, control=list(tol=tol))
231s >   print(pf1$par, digits=16)
231s [1] 0.6401136228187346 2.6634055536337877 1.2560968051580201
231s > #  good <- c(0.6401136228187346, 2.6634055536337877, 1.2560968051580201)
231s >   if (good.tol < max(abs(good - pf1$par))) stop("error in EM algorithm.")
231s > 
231s > 
231s > # First-order SQUAREM algorithm with SqS3 method
231s >   pf2 <- squarem(par=p0, y=y, fixptfn=poissmix.em, objfn=poissmix.loglik,   
231s +     control=list(tol=tol))
231s >   print(pf2$par, digits=16)
231s [1] 0.640115150897306 2.663403687572512 1.256094148796550
231s > #[1] 0.640114475404004 2.663404513995809 1.256095320343123 linux Ubuntu 10.04 Intel core 2 duo/Dell
231s > #[1] 0.640114475330512 2.663404514085158 1.256095320471585 linux Ubuntu 10.04 Intel Centrino/Toshiba
231s > 
231s > #  good <- c(0.640114475404004, 2.663404513995809, 1.256095320343123)
231s >   if (good.tol < max(abs(good - pf2$par))) stop("error in First-order SQUAREM algorithm with SqS3 method.")
231s > 
231s > # First-order SQUAREM algorithm with SqS2 method
231s >   pf3 <- squarem(par=p0, y=y, fixptfn=poissmix.em, objfn=poissmix.loglik, 
231s +     control=list(method=2, tol=tol))
231s >   print(pf3$par, digits=16)
231s [1] 0.640115225547420 2.663403596411611 1.256094019026301
231s > #[1] 0.640115228256831  2.663403593105286  1.256094014312148 linux Ubuntu 10.04 Intel core 2 duo/Dell
231s > #[1] 0.6401152283764715 2.6634035929591846 1.2560940141041679linux Ubuntu 10.04 Intel Centrino/Toshiba
231s > 
231s > #  good <- c(0.640115228256831, 2.663403593105286, 1.256094014312148)
231s >   if (good.tol < max(abs(good - pf3$par))) stop("error in First-order SQUAREM algorithm with SqS2 method.")
231s > 
231s > # First-order SQUAREM algorithm with SqS3 method; non-monotone 
231s > # Note: the objective function is not evaluated when objfn.inc = Inf 
231s >   pf4 <- squarem(par=p0,y=y, fixptfn=poissmix.em, 
231s +     control=list(tol=tol, objfn.inc=Inf))
231s >   print(pf4$par, digits=16)
231s [1] 0.640115150897306 2.663403687572512 1.256094148796550
231s > #[1] 0.640114475404004 2.663404513995809 1.256095320343123 linux Ubuntu 10.04 Intel core 2 duo/Dell
231s > #[1] 0.640114475330512 2.663404514085158 1.256095320471585 linux Ubuntu 10.04 Intel Centrino/Toshiba
231s > 
231s > #  good <- c(0.640114475404004, 2.663404513995809, 1.256095320343123)
231s >   if (good.tol < max(abs(good - pf4$par))) stop("error in First-order SQUAREM algorithm with SqS3 method; non-monotone.")
231s > 
231s > # First-order SQUAREM algorithm with SqS3 method; objective function is not specified
231s >   pf5 <- squarem(par=p0,y=y, fixptfn=poissmix.em, control=list(tol=tol, kr=0.1))
231s >   print(pf5$par, digits=16)
231s [1] 0.640115150897306 2.663403687572512 1.256094148796550
231s > #[1] 0.640114475404004 2.663404513995809 1.256095320343123 linux Ubuntu 10.04 Intel core 2 duo/Dell
231s > #[1] 0.640114475330512 2.663404514085158 1.256095320471585 linux Ubuntu 10.04 Intel Centrino/Toshiba
231s > 
231s > #  good <- c(0.640114475404004, 2.663404513995809, 1.256095320343123)
231s >   if (good.tol < max(abs(good - pf5$par))) stop("error in First-order SQUAREM algorithm with SqS3 (and no objective function).")
231s > 
231s > # Second-order (K=2) SQUAREM algorithm with SqRRE 
231s >   pf6 <- squarem(par=p0, y=y, fixptfn=poissmix.em, objfn=poissmix.loglik,
231s +     control=list (K=2, tol=tol))
231s >   print(pf6$par, digits=16)
231s [1] 0.6401146033916094 2.6634043560596576 1.2560951007707297
231s > #[1] 0.640114603181059 2.663404356560964 1.256095100702419 linux Ubuntu 10.04 Intel core 2 duo/Dell
231s > #[1] 0.640114603175754 2.663404356262396 1.256095101254215 linux Ubuntu 10.04 Intel Centrino/Toshiba
231s > 
231s > #  good <- c(0.640114603181059, 2.663404356560964, 1.256095100702419)
231s >   if (good.tol < max(abs(good - pf6$par))) stop("error in Second-order (K=2) SQUAREM algorithm with SqRRE.")
231s > 
231s > # Second-order SQUAREM algorithm with SqRRE; objective function is not specified
231s >   pf7 <- squarem(par=p0, y=y, fixptfn=poissmix.em, control=list(K=2, tol=tol))
231s >   print(pf7$par, digits=16)
231s [1] 0.6401146028011911 2.6634043572761175 1.2560951009158521
231s > #[1] 0.640114603108274  2.663404357034439  1.256095100144889  linux Ubuntu 10.04 Intel core 2 duo/Dell
231s > #[1] 0.6401146029029904 2.6634043571424155 1.2560951007555829 linux Ubuntu 10.04 Intel Centrino/Toshiba
231s > 
231s > #  good <- c(0.640114603108274, 2.663404357034439, 1.256095100144889)
232s >   if (good.tol < max(abs(good - pf7$par))) stop("error in Second-order SQUAREM algorithm with SqRRE (and no objective function).")
232s > 
232s > # Number of fixed-point evaluations
232s >   c(pf1$fpeval, pf2$fpeval, pf3$fpeval, pf4$fpeval, pf5$fpeval, pf6$fpeval, pf7$fpeval)
232s [1] 2556   66   57   66   66   36   46
232s > 
232s > # Number of objective function evaluations
232s >   c(pf1$objfeval, pf2$objfeval, pf3$objfeval, pf4$objfeval, pf5$objfeval, pf6$objfeval, pf7$objfeval)
232s [1]  0 23 20  0  0  8  0
232s > 
232s > # Comparison of converged parameter estimates
232s >   par.mat <- rbind(pf1$par, pf2$par, pf3$par, pf4$par, pf5$par, pf6$par, pf7$par)
232s >   par.mat
232s           [,1]     [,2]     [,3]
232s [1,] 0.6401136 2.663406 1.256097
232s [2,] 0.6401152 2.663404 1.256094
232s [3,] 0.6401152 2.663404 1.256094
232s [4,] 0.6401152 2.663404 1.256094
232s [5,] 0.6401152 2.663404 1.256094
232s [6,] 0.6401146 2.663404 1.256095
232s [7,] 0.6401146 2.663404 1.256095
232s > 
232s > 
232s autopkgtest [20:20:59]: test run-unit-test: -----------------------]
232s autopkgtest [20:20:59]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
232s run-unit-test        PASS
233s autopkgtest [20:21:00]: test pkg-r-autopkgtest: preparing testbed
234s Reading package lists...
234s Building dependency tree...
234s Reading state information...
235s Starting pkgProblemResolver with broken count: 0
235s Starting 2 pkgProblemResolver with broken count: 0
235s Done
235s The following additional packages will be installed:
235s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
235s   dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
235s   gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
235s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
235s   libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0
235s   libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23
235s   libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0
235s   liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0
235s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev
236s   libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config
236s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
236s Suggested packages:
236s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
236s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
236s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
236s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
236s   libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic
236s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
236s   texlive-latex-recommended texlive-latex-extra texinfo
236s Recommended packages:
236s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools
236s The following NEW packages will be installed:
236s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
236s   cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu
236s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
236s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
236s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
236s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
236s   libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
236s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
236s   libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
236s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev
236s   libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest
236s   pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
236s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded.
236s Need to get 92.9 MB/92.9 MB of archives.
236s After this operation, 343 MB of additional disk space will be used.
236s Get:1 /tmp/autopkgtest.S5nSBJ/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B]
236s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
236s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
237s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
237s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
237s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
237s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
237s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
238s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
238s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
238s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
240s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
240s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
240s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
240s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
240s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
240s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
240s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
240s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
240s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
240s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
240s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
240s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
240s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
241s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
241s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
241s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
241s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
241s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
241s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
241s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
241s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
241s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
241s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
241s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
241s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
242s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
242s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
242s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
242s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
242s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
242s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
242s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
242s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
242s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
242s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
242s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
242s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
242s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
242s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
242s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
242s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
242s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
242s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
242s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
242s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
242s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
242s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
242s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
242s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
242s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
242s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
244s Fetched 92.9 MB in 7s (13.9 MB/s)
245s Selecting previously unselected package libc-dev-bin.
245s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 76403 files and directories currently installed.)
245s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
245s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
245s Selecting previously unselected package linux-libc-dev:arm64.
245s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ...
245s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
245s Selecting previously unselected package libcrypt-dev:arm64.
245s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
245s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
245s Selecting previously unselected package libtirpc-dev:arm64.
245s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ...
245s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
245s Selecting previously unselected package libnsl-dev:arm64.
246s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ...
246s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
246s Selecting previously unselected package rpcsvc-proto.
246s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
246s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
246s Selecting previously unselected package libc6-dev:arm64.
247s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ...
247s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
247s Selecting previously unselected package libisl23:arm64.
247s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ...
247s Unpacking libisl23:arm64 (0.26-3) ...
248s Selecting previously unselected package libmpc3:arm64.
248s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ...
248s Unpacking libmpc3:arm64 (1.3.1-1) ...
248s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
248s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
248s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
248s Selecting previously unselected package cpp-13.
249s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
249s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
249s Selecting previously unselected package cpp-aarch64-linux-gnu.
249s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
249s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
249s Selecting previously unselected package cpp.
249s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
249s Unpacking cpp (4:13.2.0-7ubuntu1) ...
249s Selecting previously unselected package libcc1-0:arm64.
249s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
249s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
249s Selecting previously unselected package libitm1:arm64.
249s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ...
249s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
249s Selecting previously unselected package libatomic1:arm64.
249s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
249s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
249s Selecting previously unselected package libasan8:arm64.
249s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ...
249s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
249s Selecting previously unselected package liblsan0:arm64.
249s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
249s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
249s Selecting previously unselected package libtsan2:arm64.
249s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
249s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
249s Selecting previously unselected package libubsan1:arm64.
249s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
250s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
250s Selecting previously unselected package libhwasan0:arm64.
250s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
250s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
250s Selecting previously unselected package libgcc-13-dev:arm64.
250s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
250s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
250s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
250s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
250s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
250s Selecting previously unselected package gcc-13.
250s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
250s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
250s Selecting previously unselected package gcc-aarch64-linux-gnu.
250s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
250s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
250s Selecting previously unselected package gcc.
251s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
251s Unpacking gcc (4:13.2.0-7ubuntu1) ...
251s Selecting previously unselected package libstdc++-13-dev:arm64.
251s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
251s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
251s Selecting previously unselected package g++-13-aarch64-linux-gnu.
251s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
251s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
251s Selecting previously unselected package g++-13.
251s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ...
251s Unpacking g++-13 (13.2.0-17ubuntu2) ...
251s Selecting previously unselected package g++-aarch64-linux-gnu.
251s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
251s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
251s Selecting previously unselected package g++.
251s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
251s Unpacking g++ (4:13.2.0-7ubuntu1) ...
251s Selecting previously unselected package build-essential.
251s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ...
251s Unpacking build-essential (12.10ubuntu1) ...
251s Selecting previously unselected package dctrl-tools.
251s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ...
251s Unpacking dctrl-tools (2.24-3build2) ...
251s Selecting previously unselected package libgfortran-13-dev:arm64.
251s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
251s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
251s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
251s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
251s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
252s Selecting previously unselected package gfortran-13.
252s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
252s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
252s Selecting previously unselected package gfortran-aarch64-linux-gnu.
252s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
252s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
252s Selecting previously unselected package gfortran.
252s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
252s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
252s Selecting previously unselected package icu-devtools.
252s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ...
252s Unpacking icu-devtools (74.2-1ubuntu1) ...
252s Selecting previously unselected package libblas-dev:arm64.
252s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ...
252s Unpacking libblas-dev:arm64 (3.12.0-3) ...
252s Selecting previously unselected package libbz2-dev:arm64.
252s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
252s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
252s Selecting previously unselected package libicu-dev:arm64.
252s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ...
252s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
252s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
252s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
252s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
252s Selecting previously unselected package libjpeg8-dev:arm64.
252s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
252s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
252s Selecting previously unselected package libjpeg-dev:arm64.
252s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
252s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
252s Selecting previously unselected package liblapack-dev:arm64.
253s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ...
253s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
253s Selecting previously unselected package libncurses-dev:arm64.
253s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
253s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
253s Selecting previously unselected package libpcre2-16-0:arm64.
253s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
253s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
253s Selecting previously unselected package libpcre2-32-0:arm64.
253s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
253s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
253s Selecting previously unselected package libpcre2-posix3:arm64.
253s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
253s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
253s Selecting previously unselected package libpcre2-dev:arm64.
253s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
253s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
253s Selecting previously unselected package libpkgconf3:arm64.
253s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ...
253s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
253s Selecting previously unselected package zlib1g-dev:arm64.
253s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
253s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
253s Selecting previously unselected package libpng-dev:arm64.
253s Preparing to unpack .../53-libpng-dev_1.6.43-1_arm64.deb ...
253s Unpacking libpng-dev:arm64 (1.6.43-1) ...
253s Selecting previously unselected package libreadline-dev:arm64.
253s Preparing to unpack .../54-libreadline-dev_8.2-3_arm64.deb ...
253s Unpacking libreadline-dev:arm64 (8.2-3) ...
253s Selecting previously unselected package pkgconf-bin.
253s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ...
253s Unpacking pkgconf-bin (1.8.1-2) ...
253s Selecting previously unselected package pkgconf:arm64.
253s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ...
253s Unpacking pkgconf:arm64 (1.8.1-2) ...
253s Selecting previously unselected package pkg-config:arm64.
253s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ...
253s Unpacking pkg-config:arm64 (1.8.1-2) ...
253s Selecting previously unselected package liblzma-dev:arm64.
254s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ...
254s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ...
254s Selecting previously unselected package r-base-dev.
254s Preparing to unpack .../59-r-base-dev_4.3.2-1build1_all.deb ...
254s Unpacking r-base-dev (4.3.2-1build1) ...
254s Selecting previously unselected package pkg-r-autopkgtest.
254s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
254s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
254s Selecting previously unselected package autopkgtest-satdep.
254s Preparing to unpack .../61-2-autopkgtest-satdep.deb ...
254s Unpacking autopkgtest-satdep (0) ...
254s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
254s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
254s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
254s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
254s Setting up libpkgconf3:arm64 (1.8.1-2) ...
254s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
254s Setting up libmpc3:arm64 (1.3.1-1) ...
254s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
254s Setting up icu-devtools (74.2-1ubuntu1) ...
254s Setting up pkgconf-bin (1.8.1-2) ...
254s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
254s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
254s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
254s Setting up libnsl-dev:arm64 (1.3.0-3) ...
254s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
254s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
254s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
254s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
254s Setting up libisl23:arm64 (0.26-3) ...
254s Setting up libc-dev-bin (2.39-0ubuntu2) ...
254s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
254s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
254s Setting up libblas-dev:arm64 (3.12.0-3) ...
254s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
254s Setting up dctrl-tools (2.24-3build2) ...
254s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
254s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
254s Setting up pkgconf:arm64 (1.8.1-2) ...
254s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
254s Setting up liblapack-dev:arm64 (3.12.0-3) ...
254s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
254s Setting up pkg-config:arm64 (1.8.1-2) ...
254s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
254s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
254s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
254s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
254s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
254s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
254s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
254s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
254s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
254s Setting up cpp-13 (13.2.0-17ubuntu2) ...
254s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
254s Setting up libreadline-dev:arm64 (8.2-3) ...
254s Setting up gcc-13 (13.2.0-17ubuntu2) ...
254s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
254s Setting up cpp (4:13.2.0-7ubuntu1) ...
254s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
254s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
254s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
254s Setting up g++-13 (13.2.0-17ubuntu2) ...
254s Setting up libpng-dev:arm64 (1.6.43-1) ...
254s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
254s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
254s Setting up gcc (4:13.2.0-7ubuntu1) ...
254s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
254s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
254s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
254s Setting up gfortran (4:13.2.0-7ubuntu1) ...
254s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
254s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
254s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
254s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
254s Setting up g++ (4:13.2.0-7ubuntu1) ...
254s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
254s Setting up build-essential (12.10ubuntu1) ...
254s Setting up r-base-dev (4.3.2-1build1) ...
254s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
254s Setting up autopkgtest-satdep (0) ...
254s Processing triggers for man-db (2.12.0-3) ...
256s Processing triggers for install-info (7.1-3) ...
256s Processing triggers for libc-bin (2.39-0ubuntu2) ...
261s (Reading database ... 79962 files and directories currently installed.)
261s Removing autopkgtest-satdep (0) ...
261s autopkgtest [20:21:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
261s autopkgtest [20:21:28]: test pkg-r-autopkgtest: [-----------------------
262s Test: Try to load the R library SQUAREM
262s 
262s R version 4.3.2 (2023-10-31) -- "Eye Holes"
262s Copyright (C) 2023 The R Foundation for Statistical Computing
262s Platform: aarch64-unknown-linux-gnu (64-bit)
262s 
262s R is free software and comes with ABSOLUTELY NO WARRANTY.
262s You are welcome to redistribute it under certain conditions.
262s Type 'license()' or 'licence()' for distribution details.
262s 
262s R is a collaborative project with many contributors.
262s Type 'contributors()' for more information and
262s 'citation()' on how to cite R or R packages in publications.
262s 
262s Type 'demo()' for some demos, 'help()' for on-line help, or
262s 'help.start()' for an HTML browser interface to help.
262s Type 'q()' to quit R.
262s 
262s > library('SQUAREM')
262s > 
262s > 
262s Other tests are currently unsupported!
262s They will be progressively added.
263s autopkgtest [20:21:30]: test pkg-r-autopkgtest: -----------------------]
263s autopkgtest [20:21:30]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
263s pkg-r-autopkgtest    PASS
264s autopkgtest [20:21:31]: @@@@@@@@@@@@@@@@@@@@ summary
264s run-unit-test        PASS
264s pkg-r-autopkgtest    PASS
275s Creating nova instance adt-noble-arm64-r-cran-squarem-20240316-201707-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...