0s autopkgtest [20:15:53]: starting date and time: 2024-03-16 20:15:53+0000 0s autopkgtest [20:15:53]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [20:15:53]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8qgld9ua/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-spatstat.sparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-10.secgroup --name adt-noble-arm64-r-cran-spatstat.sparse-20240316-201553-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 151s autopkgtest [20:18:24]: testbed dpkg architecture: arm64 151s autopkgtest [20:18:24]: testbed apt version: 2.7.12 151s autopkgtest [20:18:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 151s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 152s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3704 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 152s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 152s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 152s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 152s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 152s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 152s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 152s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4012 kB] 152s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 152s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 152s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 154s Fetched 9112 kB in 2s (5254 kB/s) 155s Reading package lists... 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 160s Calculating upgrade... 160s The following packages will be REMOVED: 160s libglib2.0-0 libssl3 160s The following NEW packages will be installed: 160s libglib2.0-0t64 libssl3t64 xdg-user-dirs 160s The following packages have been kept back: 160s curl 160s The following packages will be upgraded: 160s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 160s ubuntu-minimal ubuntu-standard 161s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 161s Need to get 4613 kB of archives. 161s After this operation, 211 kB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 161s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 161s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 161s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 161s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 161s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 161s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 161s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 162s Fetched 4613 kB in 1s (6870 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 162s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 162s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 162s udisks2 depends on libglib2.0-0 (>= 2.77.0). 162s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 162s python3-gi depends on libglib2.0-0 (>= 2.77.0). 162s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 162s netplan.io depends on libglib2.0-0 (>= 2.70.0). 162s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 162s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 162s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 162s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 162s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 162s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 162s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 162s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 162s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 162s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 162s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 162s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 162s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 162s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 162s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s fwupd depends on libglib2.0-0 (>= 2.79.0). 162s bolt depends on libglib2.0-0 (>= 2.56.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 162s Selecting previously unselected package libglib2.0-0t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 162s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 162s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 162s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 162s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 162s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 162s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 162s wget depends on libssl3 (>= 3.0.0). 162s u-boot-tools depends on libssl3 (>= 3.0.0). 162s tnftp depends on libssl3 (>= 3.0.0). 162s tcpdump depends on libssl3 (>= 3.0.0). 162s systemd-resolved depends on libssl3 (>= 3.0.0). 162s systemd depends on libssl3 (>= 3.0.0). 162s sudo depends on libssl3 (>= 3.0.0). 162s sbsigntool depends on libssl3 (>= 3.0.0). 162s rsync depends on libssl3 (>= 3.0.0). 162s python3-cryptography depends on libssl3 (>= 3.0.0). 162s openssh-server depends on libssl3 (>= 3.0.10). 162s openssh-client depends on libssl3 (>= 3.0.10). 162s mtd-utils depends on libssl3 (>= 3.0.0). 162s mokutil depends on libssl3 (>= 3.0.0). 162s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 162s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 162s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 162s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 162s libnvme1 depends on libssl3 (>= 3.0.0). 162s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 162s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 162s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 162s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 162s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 162s kmod depends on libssl3 (>= 3.0.0). 162s dhcpcd-base depends on libssl3 (>= 3.0.0). 162s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 162s Selecting previously unselected package libssl3t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 162s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 163s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 163s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 163s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 163s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 163s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 163s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 163s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 163s Unpacking ubuntu-minimal (1.536) over (1.535) ... 163s Selecting previously unselected package xdg-user-dirs. 163s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 163s Unpacking xdg-user-dirs (0.18-1) ... 163s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 163s Unpacking ubuntu-standard (1.536) over (1.535) ... 163s Setting up ubuntu-minimal (1.536) ... 163s Setting up xdg-user-dirs (0.18-1) ... 163s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 163s Setting up libtirpc-common (1.3.4+ds-1.1) ... 163s Setting up ubuntu-standard (1.536) ... 163s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 163s No schema files found: doing nothing. 163s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 163s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 163s Setting up openssl (3.0.13-0ubuntu1) ... 163s Setting up readline-common (8.2-3.1) ... 163s Processing triggers for man-db (2.12.0-3) ... 163s Processing triggers for install-info (7.1-3) ... 164s Processing triggers for libc-bin (2.39-0ubuntu2) ... 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 166s sh: Attempting to set up Debian/Ubuntu apt sources automatically 166s sh: Distribution appears to be Ubuntu 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s eatmydata is already the newest version (131-1). 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s dbus is already the newest version (1.14.10-4ubuntu1). 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s rng-tools-debian is already the newest version (2.4). 170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s The following packages will be REMOVED: 171s cloud-init* python3-configobj* python3-debconf* 172s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 172s After this operation, 3252 kB disk space will be freed. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 172s Removing cloud-init (24.1.1-0ubuntu1) ... 172s Removing python3-configobj (5.0.8-3) ... 172s Removing python3-debconf (1.5.86) ... 172s Processing triggers for man-db (2.12.0-3) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 173s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 173s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 173s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 174s invoke-rc.d: policy-rc.d denied execution of try-restart. 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 175s linux-generic is already the newest version (6.8.0-11.11+1). 175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 175s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 175s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 175s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 177s Reading package lists... 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s Calculating upgrade... 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s autopkgtest [20:18:53]: rebooting testbed after setup commands that affected boot 212s autopkgtest [20:19:25]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 216s autopkgtest [20:19:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.sparse 218s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-spatstat.sparse 3.0-3-1 (dsc) [2237 B] 218s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-spatstat.sparse 3.0-3-1 (tar) [41.6 kB] 218s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-spatstat.sparse 3.0-3-1 (diff) [2612 B] 218s gpgv: Signature made Fri Oct 27 10:00:03 2023 UTC 218s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 218s gpgv: issuer "tille@debian.org" 218s gpgv: Can't check signature: No public key 218s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.sparse_3.0-3-1.dsc: no acceptable signature found 218s autopkgtest [20:19:31]: testing package r-cran-spatstat.sparse version 3.0-3-1 219s autopkgtest [20:19:32]: build not needed 220s autopkgtest [20:19:33]: test run-unit-test: preparing testbed 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 222s The following additional packages will be installed: 222s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 222s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 222s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 222s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 222s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 222s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 222s libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-abind r-cran-lattice 222s r-cran-matrix r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-tensor 222s unzip x11-common xdg-utils zip 223s Suggested packages: 223s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 223s Recommended packages: 223s r-recommended r-base-dev r-doc-html r-cran-spatstat.model 223s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 223s x11-xserver-utils 223s The following NEW packages will be installed: 223s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 223s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 223s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 223s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 223s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 223s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 223s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 223s r-base-core r-cran-abind r-cran-lattice r-cran-matrix r-cran-spatstat.sparse 223s r-cran-spatstat.utils r-cran-tensor unzip x11-common xdg-utils zip 223s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. 223s Need to get 42.4 MB/42.4 MB of archives. 223s After this operation, 84.5 MB of additional disk space will be used. 223s Get:1 /tmp/autopkgtest.NjkVyW/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 223s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 223s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 223s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 223s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 223s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 223s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 223s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 223s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 223s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 223s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 223s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 223s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 223s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 223s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 223s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 223s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 223s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 223s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 223s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 223s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 223s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 223s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 223s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 223s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 223s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 223s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 223s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 223s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 223s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 223s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 223s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 223s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 224s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 224s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 224s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 224s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 224s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 224s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 224s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 224s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 224s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 224s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 224s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 224s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 224s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 224s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 224s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 224s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 224s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 224s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 225s Preconfiguring packages ... 225s Fetched 42.4 MB in 2s (23.0 MB/s) 225s Selecting previously unselected package fonts-dejavu-mono. 225s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 225s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 225s Unpacking fonts-dejavu-mono (2.37-8) ... 225s Selecting previously unselected package fonts-dejavu-core. 225s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 225s Unpacking fonts-dejavu-core (2.37-8) ... 225s Selecting previously unselected package fontconfig-config. 225s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 226s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 226s Selecting previously unselected package libfontconfig1:arm64. 226s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 226s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 226s Selecting previously unselected package fontconfig. 226s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 226s Unpacking fontconfig (2.15.0-1ubuntu1) ... 226s Selecting previously unselected package libblas3:arm64. 226s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 226s Unpacking libblas3:arm64 (3.12.0-3) ... 226s Selecting previously unselected package libpixman-1-0:arm64. 226s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ... 226s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 226s Selecting previously unselected package libxcb-render0:arm64. 226s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ... 226s Unpacking libxcb-render0:arm64 (1.15-1) ... 226s Selecting previously unselected package libxcb-shm0:arm64. 226s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ... 226s Unpacking libxcb-shm0:arm64 (1.15-1) ... 226s Selecting previously unselected package libxrender1:arm64. 226s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 226s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 226s Selecting previously unselected package libcairo2:arm64. 226s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ... 226s Unpacking libcairo2:arm64 (1.18.0-1) ... 226s Selecting previously unselected package libdatrie1:arm64. 226s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ... 226s Unpacking libdatrie1:arm64 (0.2.13-3) ... 226s Selecting previously unselected package libdeflate0:arm64. 226s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ... 226s Unpacking libdeflate0:arm64 (1.19-1) ... 226s Selecting previously unselected package libgfortran5:arm64. 226s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 226s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 226s Selecting previously unselected package libgomp1:arm64. 226s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 226s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 226s Selecting previously unselected package libgraphite2-3:arm64. 226s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ... 226s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 226s Selecting previously unselected package libharfbuzz0b:arm64. 226s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ... 226s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 226s Selecting previously unselected package x11-common. 226s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ... 226s Unpacking x11-common (1:7.7+23ubuntu2) ... 226s Selecting previously unselected package libice6:arm64. 226s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ... 226s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 226s Selecting previously unselected package libjpeg-turbo8:arm64. 226s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 226s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 226s Selecting previously unselected package libjpeg8:arm64. 226s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 226s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 226s Selecting previously unselected package liblapack3:arm64. 226s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ... 226s Unpacking liblapack3:arm64 (3.12.0-3) ... 226s Selecting previously unselected package liblerc4:arm64. 226s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 226s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 226s Selecting previously unselected package libthai-data. 226s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ... 226s Unpacking libthai-data (0.1.29-2) ... 226s Selecting previously unselected package libthai0:arm64. 226s Preparing to unpack .../24-libthai0_0.1.29-2_arm64.deb ... 226s Unpacking libthai0:arm64 (0.1.29-2) ... 226s Selecting previously unselected package libpango-1.0-0:arm64. 226s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 226s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 226s Selecting previously unselected package libpangoft2-1.0-0:arm64. 226s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 226s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 226s Selecting previously unselected package libpangocairo-1.0-0:arm64. 227s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 227s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 227s Selecting previously unselected package libpaper1:arm64. 227s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ... 227s Unpacking libpaper1:arm64 (1.1.29) ... 227s Selecting previously unselected package libpaper-utils. 227s Preparing to unpack .../29-libpaper-utils_1.1.29_arm64.deb ... 227s Unpacking libpaper-utils (1.1.29) ... 227s Selecting previously unselected package libsharpyuv0:arm64. 227s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ... 227s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 227s Selecting previously unselected package libsm6:arm64. 227s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ... 227s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 227s Selecting previously unselected package libtcl8.6:arm64. 227s Preparing to unpack .../32-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 227s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 227s Selecting previously unselected package libjbig0:arm64. 227s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 227s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 227s Selecting previously unselected package libwebp7:arm64. 227s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ... 227s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 227s Selecting previously unselected package libtiff6:arm64. 227s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 227s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 227s Selecting previously unselected package libxft2:arm64. 227s Preparing to unpack .../36-libxft2_2.3.6-1_arm64.deb ... 227s Unpacking libxft2:arm64 (2.3.6-1) ... 227s Selecting previously unselected package libxss1:arm64. 227s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build2_arm64.deb ... 227s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 227s Selecting previously unselected package libtk8.6:arm64. 227s Preparing to unpack .../38-libtk8.6_8.6.13-2_arm64.deb ... 227s Unpacking libtk8.6:arm64 (8.6.13-2) ... 227s Selecting previously unselected package libxt6:arm64. 227s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ... 227s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 227s Selecting previously unselected package zip. 227s Preparing to unpack .../40-zip_3.0-13_arm64.deb ... 227s Unpacking zip (3.0-13) ... 227s Selecting previously unselected package unzip. 227s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ... 227s Unpacking unzip (6.0-28ubuntu3) ... 227s Selecting previously unselected package xdg-utils. 227s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 227s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 227s Selecting previously unselected package r-base-core. 227s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ... 227s Unpacking r-base-core (4.3.2-1build1) ... 227s Selecting previously unselected package r-cran-abind. 227s Preparing to unpack .../44-r-cran-abind_1.4-5-2_all.deb ... 227s Unpacking r-cran-abind (1.4-5-2) ... 227s Selecting previously unselected package r-cran-lattice. 227s Preparing to unpack .../45-r-cran-lattice_0.22-5-1_arm64.deb ... 227s Unpacking r-cran-lattice (0.22-5-1) ... 227s Selecting previously unselected package r-cran-matrix. 227s Preparing to unpack .../46-r-cran-matrix_1.6-5-1_arm64.deb ... 227s Unpacking r-cran-matrix (1.6-5-1) ... 228s Selecting previously unselected package r-cran-tensor. 228s Preparing to unpack .../47-r-cran-tensor_1.5-4_all.deb ... 228s Unpacking r-cran-tensor (1.5-4) ... 228s Selecting previously unselected package r-cran-spatstat.utils. 228s Preparing to unpack .../48-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 228s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 228s Selecting previously unselected package r-cran-spatstat.sparse. 228s Preparing to unpack .../49-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 228s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 228s Selecting previously unselected package autopkgtest-satdep. 228s Preparing to unpack .../50-1-autopkgtest-satdep.deb ... 228s Unpacking autopkgtest-satdep (0) ... 228s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 228s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 228s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 228s Setting up libpaper1:arm64 (1.1.29) ... 228s 228s Creating config file /etc/papersize with new version 229s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 229s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 229s Setting up libdatrie1:arm64 (0.2.13-3) ... 229s Setting up libxcb-render0:arm64 (1.15-1) ... 229s Setting up unzip (6.0-28ubuntu3) ... 229s Setting up x11-common (1:7.7+23ubuntu2) ... 229s Setting up libdeflate0:arm64 (1.19-1) ... 229s Setting up libxcb-shm0:arm64 (1.15-1) ... 229s Setting up libpaper-utils (1.1.29) ... 229s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 229s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 229s Setting up zip (3.0-13) ... 229s Setting up libblas3:arm64 (3.12.0-3) ... 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 229s Setting up fonts-dejavu-mono (2.37-8) ... 229s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 229s Setting up fonts-dejavu-core (2.37-8) ... 229s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 229s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 229s Setting up libwebp7:arm64 (1.3.2-0.4) ... 229s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 229s Setting up libthai-data (0.1.29-2) ... 229s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 229s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 229s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 229s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 229s Setting up libice6:arm64 (2:1.0.10-1build2) ... 229s Setting up liblapack3:arm64 (3.12.0-3) ... 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 229s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 230s Setting up libthai0:arm64 (0.1.29-2) ... 230s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 230s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 230s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 230s Setting up fontconfig (2.15.0-1ubuntu1) ... 232s Regenerating fonts cache... done. 232s Setting up libxft2:arm64 (2.3.6-1) ... 232s Setting up libtk8.6:arm64 (8.6.13-2) ... 232s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 232s Setting up libcairo2:arm64 (1.18.0-1) ... 232s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 232s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 232s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 232s Setting up r-base-core (4.3.2-1build1) ... 232s 232s Creating config file /etc/R/Renviron with new version 232s Setting up r-cran-lattice (0.22-5-1) ... 232s Setting up r-cran-spatstat.utils (3.0-4-1) ... 232s Setting up r-cran-tensor (1.5-4) ... 232s Setting up r-cran-abind (1.4-5-2) ... 232s Setting up r-cran-matrix (1.6-5-1) ... 232s Setting up r-cran-spatstat.sparse (3.0-3-1) ... 232s Setting up autopkgtest-satdep (0) ... 232s Processing triggers for man-db (2.12.0-3) ... 233s Processing triggers for install-info (7.1-3) ... 233s Processing triggers for libc-bin (2.39-0ubuntu2) ... 238s (Reading database ... 76643 files and directories currently installed.) 238s Removing autopkgtest-satdep (0) ... 238s autopkgtest [20:19:51]: test run-unit-test: [----------------------- 238s BEGIN TEST linalgeb.R 239s 239s R version 4.3.2 (2023-10-31) -- "Eye Holes" 239s Copyright (C) 2023 The R Foundation for Statistical Computing 239s Platform: aarch64-unknown-linux-gnu (64-bit) 239s 239s R is free software and comes with ABSOLUTELY NO WARRANTY. 239s You are welcome to redistribute it under certain conditions. 239s Type 'license()' or 'licence()' for distribution details. 239s 239s R is a collaborative project with many contributors. 239s Type 'contributors()' for more information and 239s 'citation()' on how to cite R or R packages in publications. 239s 239s Type 'demo()' for some demos, 'help()' for on-line help, or 239s 'help.start()' for an HTML browser interface to help. 239s Type 'q()' to quit R. 239s 239s > #' Header for spatstat.sparse/tests/*R 239s > #' 239s > 239s > require(spatstat.sparse) 239s Loading required package: spatstat.sparse 239s Loading required package: Matrix 239s Loading required package: abind 239s Loading required package: tensor 240s > ALWAYS <- FULLTEST <- TRUE 240s > ## 240s > ## tests/linalgeb.R 240s > ## 240s > ## checks validity of linear algebra code 240s > ## 240s > ## $Revision: 1.13 $ $Date: 2022/04/18 03:16:26 $ 240s > ## 240s > 240s > local({ 240s + p <- 3 240s + n <- 4 240s + k <- 2 240s + 240s + ## correctness of 'quadform' 240s + x <- matrix(1:(n*p), n, p) 240s + v <- matrix(runif(p^2), p, p) 240s + zW <- zU <- numeric(n) 240s + for(i in 1:n) { 240s + xi <- x[i,,drop=FALSE] 240s + zW[i] <- xi %*% v %*% t(xi) 240s + zU[i] <- xi %*% t(xi) 240s + } 240s + if(!all(zU == quadform(x))) 240s + stop("quadform gives incorrect result in Unweighted case") 240s + if(!all(zW == quadform(x,v))) 240s + stop("quadform gives incorrect result in Weighted case") 240s + 240s + ## correctness of 'sumouter' 240s + w <- runif(n) 240s + y <- matrix(1:(2*n), n, k) 240s + zUS <- zWS <- matrix(0, p, p) 240s + zUA <- zWA <- matrix(0, p, k) 240s + for(i in 1:n) { 240s + zUS <- zUS + outer(x[i,],x[i,]) 240s + zWS <- zWS + w[i] * outer(x[i,],x[i,]) 240s + zUA <- zUA + outer(x[i,],y[i,]) 240s + zWA <- zWA + w[i] * outer(x[i,],y[i,]) 240s + } 240s + if(!identical(zUS, sumouter(x))) 240s + stop("sumouter gives incorrect result in Unweighted Symmetric case") 240s + if(!identical(zWS, sumouter(x,w))) 240s + stop("sumouter gives incorrect result in Weighted Symmetric case") 240s + if(!identical(zUA, sumouter(x, y=y))) 240s + stop("sumouter gives incorrect result in Unweighted Asymmetric case") 240s + if(!identical(zWA, sumouter(x, w, y))) 240s + stop("sumouter gives incorrect result in Weighted Asymmetric case") 240s + 240s + #' complex quadratic forms - execute only 240s + dimnames(x) <- list(letters[1:nrow(x)], LETTERS[1:ncol(x)]) 240s + a <- quadform(x + 1i) 240s + b <- quadform(x + 1i, v+1i) 240s + d <- quadform(x , v+1i) 240s + a <- sumouter(x + 1i) 240s + b <- sumouter(x + 1i, w + 1i) 240s + d <- sumouter(x + 1i, w + 1i, x - 1i) 240s + 240s + #' NA values 240s + xna <- x; xna[1,1] <- NA 240s + wna <- w; w[2] <- NA 240s + vna <- v; v[1,2] <- NA 240s + o <- quadform(xna) 240s + o <- quadform(xna, vna) 240s + o <- sumouter(xna) 240s + o <- sumouter(xna, w) 240s + o <- sumouter(xna, wna) 240s + 240s + #' sumsymouter 240s + x <- array(as.numeric(1:(p * n * n)), dim=c(p, n, n)) 240s + w <- matrix(1:(n*n), n, n) 240s + y <- matrix(numeric(p * p), p, p) 240s + #' check correctness 240s + for(i in 1:n) 240s + for(j in (1:n)[-i]) 240s + y <- y + w[i,j] * outer(x[,i,j], x[,j,i]) 240s + z <- sumsymouter(x, w) 240s + if(!identical(y,z)) 240s + stop("sumsymouter gives incorrect result") 240s + #' cover code blocks 240s + o <- sumsymouter(x, distinct=FALSE) 240s + a <- sumsymouter(x + 1i) 240s + b <- sumsymouter(x + 1i, w + 1i) 240s + if(require(Matrix)) o <- sumsymouter(x, as(w, "sparseMatrix")) 240s + 240s + #' matrixpower, matrixsqrt, matrixinvsqrt 240s + checkit <- function(A, B=diag(nrow(A)), what) { 240s + discrep <- max(abs(A-B)) 240s + if(discrep > sqrt(.Machine$double.eps)) 240s + stop(paste("large discrepancy", discrep, "in", what), call.=FALSE) 240s + return(discrep) 240s + } 240s + #' (a) power of matrix is complex 240s + M <- diag(c(4,-4)) 240s + dimnames(M) <- list(letters[1:2], letters[1:2]) 240s + V <- matrixsqrt(M) 240s + U <- matrixinvsqrt(M) 240s + V2 <- matrixpower(M, 1/2) 240s + checkit(V %*% V, M, "square of matrixsqrt") 240s + checkit(V %*% U, what="matrixsqrt * matrixinvsqrt") 240s + checkit(V2 %*% V2, M, "square of matrixpower(1/2)") 240s + W <- matrixsqrt(abs(M), complexOK=FALSE) 240s + #' (b) power of asymmetric complex matrix 240s + Z <- matrix(c(1+1i, 2+1i, 2+3i, 5+5i), 2, 2) 240s + V <- matrixsqrt(Z) 240s + U <- matrixinvsqrt(Z) 240s + V2 <- matrixpower(Z, 1/2) 240s + checkit(V %*% V, Z, "square of matrixsqrt (complex)") 240s + checkit(V %*% U, what="matrixsqrt * matrixinvsqrt (complex)") 240s + checkit(V2 %*% V2, Z, "square of matrixpower(1/2) (complex)") 240s + 240s + #' infrastructure 240s + A <- matrix(1:12, 3, 4) 240s + B <- matrix(1:8, 4, 2) 240s + check.mat.mul(A, B) 240s + check.mat.mul(A, B[,1]) 240s + check.mat.mul(A, A, fatal=FALSE) 240s + D <- diag(c(1,4,9)) 240s + checksolve(D) 240s + D[1,1] <- 0 240s + checksolve(D, "silent") 240s + }) 240s NULL 240s > 240s BEGIN TEST sparse3Darrays.R 240s 240s R version 4.3.2 (2023-10-31) -- "Eye Holes" 240s Copyright (C) 2023 The R Foundation for Statistical Computing 240s Platform: aarch64-unknown-linux-gnu (64-bit) 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > #' Header for spatstat.sparse/tests/*R 240s > #' 240s > 240s > require(spatstat.sparse) 240s Loading required package: spatstat.sparse 240s Loading required package: Matrix 241s Loading required package: abind 241s Loading required package: tensor 241s > ALWAYS <- FULLTEST <- TRUE 241s > #' tests/sparse3Darrays.R 241s > #' Basic tests of code in sparse3Darray.R and sparsecommon.R 241s > #' $Revision: 1.32 $ $Date: 2023/06/23 02:34:57 $ 241s > 241s > if(!exists("ALWAYS")) ALWAYS <- TRUE 241s > if(!exists("FULLTEST")) FULLTEST <- ALWAYS 241s > 241s > if(ALWAYS) { # fundamental, C code 241s + local({ 241s + #' forming arrays 241s + 241s + #' creation by specifying nonzero elements 241s + M <- sparse3Darray(i=1:3, j=c(3,1,2), k=4:2, 241s + x=runif(3), dims=rep(4, 3)) 241s + #' duplicate entries 241s + Mn <- sparse3Darray(i=c(1,1,2), j=c(2,2,1), k=c(3,3,2), 241s + x=runif(3), dims=rep(3, 3)) 241s + #' cumulate entries in duplicate positions 241s + Ms <- sparse3Darray(i=c(1,1,2), j=c(2,2,1), k=c(3,3,2), 241s + x=runif(3), dims=rep(3, 3), strict=TRUE) 241s + 241s + #' print method 241s + print(M) 241s + 241s + #' conversion of other data 241s + A <- array(c(1,3,0,0,0,0,0,4,0,2,0,5, 241s + 0,0,1,0,0,0,1,0,0,0,1,0), 241s + dim=c(3,4,2)) 241s + A1 <- A[,,1] 241s + A2 <- A[,,2] 241s + Z <- A[integer(0), , ] 241s + 241s + #' array to sparse array 241s + AA <- as.sparse3Darray(A) # positive extent 241s + ZZ <- as.sparse3Darray(Z) # zero extent 241s + #' list of matrices to sparse array 241s + AA <- as.sparse3Darray(list(A1, A2)) 241s + #' matrix to sparse array 241s + AA1 <- as.sparse3Darray(A1) 241s + #' vector to sparse array 241s + A11 <- A[,1,1] 241s + AA11 <- as.sparse3Darray(A11) 241s + #' NULL with warning 241s + suppressWarnings(Niets <- as.sparse3Darray(list())) 241s + 241s + #' 241s + dim(AA) <- dim(AA) + 1 241s + 241s + I1 <- SparseIndices(A1) 241s + I11 <- SparseIndices(A11) 241s + 241s + BB <- evalSparse3Dentrywise(AA + AA/2) 241s + 241s + MM <- bind.sparse3Darray(M, M, along=1) 241s + MM <- bind.sparse3Darray(M, M, along=2) 241s + 241s + if(require(Matrix)) { 241s + #' sparse matrices from Matrix package 241s + A1 <- as(A1, "sparseMatrix") 241s + A2 <- as(A2, "sparseMatrix") 241s + A11 <- as(A11, "sparseVector") 241s + #' convert a list of sparse matrices to sparse array 241s + AA <- as.sparse3Darray(list(A1, A2)) 241s + #' sparse matrix to sparse array 241s + AA1 <- as.sparse3Darray(A1) 241s + #' sparse vector to sparse array 241s + AA11 <- as.sparse3Darray(A11) 241s + 241s + #' internals 241s + E1 <- SparseEntries(A1) 241s + I1 <- SparseIndices(A1) 241s + I11 <- SparseIndices(A11) 241s + df <- data.frame(i=c(1,3,5), j=3:1, k=rep(2, 3), x=runif(3)) 241s + aa <- EntriesToSparse(df, NULL) 241s + bb <- EntriesToSparse(df, 7) 241s + cc <- EntriesToSparse(df, c(7, 4)) 241s + dd <- EntriesToSparse(df, c(7, 4, 3)) 241s + 241s + #' duplicated entries 241s + dfdup <- df[c(1:3, 2), ] 241s + aa <- EntriesToSparse(dfdup, NULL) 241s + bb <- EntriesToSparse(dfdup, 7) 241s + cc <- EntriesToSparse(dfdup, c(7, 4)) 241s + dd <- EntriesToSparse(dfdup, c(7, 4, 3)) 241s + 241s + #' example from Joey Arthur (bug in EntriesToSparse) 241s + joey <- as.sparse3Darray( 241s + list( 241s + as(matrix(rep(1, 9), 3, 3), 'dgCMatrix'), 241s + as(matrix(rep(0, 9), 3, 3), 'dgCMatrix'), 241s + as(matrix(rep(2, 9), 3, 3), 'dgCMatrix') 241s + ) 241s + ) 241s + answer <- marginSumsSparse(joey, 3) 241s + rightanswer <- marginSums(as.array(joey), 3) # [1] 9 0 18 241s + if(!all(as.vector(answer) == rightanswer)) { 241s + cat("Result of marginSumsSparse:\n") 241s + print(answer) 241s + cat("Right answer:\n") 241s + print(rightanswer) 241s + stop("Incorrect answer from marginSumsSparse") 241s + } 241s + 241s + } 241s + }) 241s + 241s + 241s + local({ 241s + 241s + if(require(Matrix)) { 241s + 241s + M <- sparse3Darray(i=1:4, j=sample(1:4, replace=TRUE), 241s + k=c(1,2,1,2), x=1:4, dims=c(5,5,2)) 241s + 241s + M 241s + 241s + dimnames(M) <- list(letters[1:5], LETTERS[1:5], c("yes", "no")) 241s + M 241s + 241s + U <- aperm(M, c(1,3,2)) 241s + U 241s + 241s + #' tests of [.sparse3Darray 241s + M[ 3:4, , ] 241s + M[ 3:4, 2:4, ] 241s + M[ 4:3, 4:2, 1:2] 241s + M[, 3, ] 241s + M[, 3, , drop=FALSE] 241s + M[c(FALSE,TRUE,FALSE,FALSE,TRUE), , ] 241s + M[, , c(FALSE,FALSE), drop=FALSE] 241s + M[1:2, 1, 2:3] # exceeds array bounds 241s + # matrix index 241s + M[cbind(3:5, 3:5, c(1,2,1))] 241s + M[cbind(3:5, 3:5, 2)] 241s + M[cbind(3:5, 2, 2)] 241s + M[cbind(c(2,2,4), c(3,3,2), 1)] # repeated indices 241s + M[cbind(1:4, 1, 2:3)] # exceeds array bounds 241s + 241s + MA <- as.array(M) 241s + UA <- as.array(U) 241s + 241s + Mfix <- sparse3Darray(i=1:3, j=c(3,1,2), k=4:2, 241s + x=runif(3), dims=rep(4, 3)) 241s + Mfix[cbind(1,3,4)] # single entry - occupied 241s + Mfix[cbind(1,2,4)] # single entry - unoccupied 241s + Mfix[cbind(1,c(2,3,2,3),4)] # sparse vector with repeated entries 241s + 241s + 241s + ## tests of "[<-.sparse3Darray" 241s + Mflip <- Mzero <- MandM <- Mnew <- Mext <- M 241s + Mflip[ , , 2:1] <- M 241s + stopifnot(Mflip[3,1,1] == M[3,1,2]) 241s + Mzero[1:3,1:3,] <- 0 241s + stopifnot(all(Mzero[1,1,] == 0)) 241s + M2a <- M[,,2,drop=FALSE] 241s + M2d <- M[,,2,drop=TRUE] 241s + MandM[,,1] <- M2a 241s + MandM[,,1] <- M2d 241s + ## slices of different dimensions 241s + M[ , 3, 1] <- 1:5 241s + M[2, , 2] <- 1:5 241s + M[ 1, 3:5, 2] <- 4:6 241s + M[ 2, 5:3, 2] <- 4:6 241s + V3 <- sparseVector(x=1, i=2, length=3) 241s + M[ 1, 3:5, 2] <- V3 241s + M[ 2, 5:3, 2] <- V3 241s + M[,,2] <- M2a 241s + M[,,2] <- (M2a + 1) 241s + V5 <- sparseVector(x=1:2, i=2:3, length=5) 241s + M[,2,2] <- V5 241s + M[,,2] <- V5 241s + Mext[1,2,3] <- 4 # exceeds array bounds 241s + ## integer matrix index 241s + Mnew[cbind(3:5, 3:5, c(1,2,1))] <- 1:3 241s + Mnew[cbind(3:5, 3:5, 2)] <- 1:3 241s + Mnew[cbind(3:5, 2, 2)] <- 1:3 241s + Mnew[cbind(3:5, 3:5, c(1,2,1))] <- V3 241s + Mnew[cbind(3:5, 3:5, 2)] <- V3 241s + Mnew[cbind(3:5, 2, 2)] <- V3 241s + ## tests of arithmetic (Math, Ops, Summary) 241s + negM <- -M 241s + oneM <- 1 * M 241s + oneM <- M * 1 241s + twoM <- M + M 241s + range(M) 241s + 241s + cosM <- cos(M) # non-sparse 241s + sinM <- sin(M) # sparse 241s + 241s + Mpos <- (M > 0) # sparse 241s + Mzero <- !Mpos # non-sparse 241s + 241s + stopifnot(all((M+M) == 2*M)) # non-sparse 241s + stopifnot(!any((M+M) != 2*M)) # sparse 241s + 241s + ztimesM <- (1:5) * M # sparse 241s + zplusM <- (1:5) + M # non-sparse 241s + 241s + ## reconcile dimensions 241s + Msub <- M[,,1,drop=FALSE] 241s + Mdif <- M - Msub 241s + Mduf <- Msub - M 241s + 241s + ## tensor operator 241s + o <- tensorSparse(c(1,-1), M, 1, 3) 241s + o <- tensorSparse(M, M, 1:2, 1:2) 241s + o <- tensorSparse(M, M, 1:2, 2:1) 241s + o <- tensorSparse(as.array(M), as.array(M), 1:2, 2:1) 241s + V <- sparseVector(i=c(1,3,6),x=1:3, length=7) 241s + o <- tensorSparse(V,V) 241s + o <- tensorSparse(V,V,1,1) 241s + o <- tensorSparse(M,V[1:5],1,1) 241s + A <- sparseMatrix(i=integer(0), j=integer(0), x=numeric(0), dims=c(7, 15)) 241s + A[1:4, 2:5] <- 3 241s + o <- tensorSparse(A, A, 1, 1) 241s + o <- tensorSparse(t(A), A, 2, 1) 241s + o <- tensorSparse(V, A, 1, 1) 241s + o <- tensorSparse(t(A), V, 2, 1) 241s + o <- tensorSparse(as.vector(V), A, 1, 1) 241s + o <- tensorSparse(t(A), as.vector(V), 2, 1) 241s + 241s + v <- 0:3 241s + o <- tensor1x1(v, Mfix) 241s + o <- tensor1x1(v, as.array(Mfix)) 241s + o <- tensor1x1(as(v, "sparseVector"), Mfix) 241s + 241s + ## test of anyNA method 241s + anyNA(M) 241s + 241s + ## previously caused an error 241s + a <- list(i = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 241s + 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 241s + 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 241s + 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 241s + 2L, 2L, 2L, 2L), 241s + j = c(17L, 4L, 34L, 39L, 38L, 25L, 14L, 241s + 40L, 1L, 19L, 36L, 9L, 16L, 23L, 241s + 15L, 17L, 4L, 34L, 39L, 38L, 241s + 25L, 14L, 40L, 1L, 19L, 36L, 9L, 241s + 16L, 23L, 15L, 13L, 31L, 8L, 241s + 5L, 42L), 241s + k = c(14L, 8L, 38L, 30L, 17L, 5L, 9L, 241s + 6L, 31L, 39L, 26L, 27L, 41L, 1L, 241s + 28L, 14L, 8L, 38L, 30L, 17L, 5L, 9L, 6L, 31L, 241s + 39L, 26L, 27L, 41L, 1L, 28L, 36L, 15L, 19L, 21L, 42L)) 241s + A <- with(a, sparse3Darray(i=i, j=j, k=k, x=1, dims=c(2, 42, 42))) 241s + stopifnot(all(sumsymouterSparse(A) == sumsymouter(as.array(A)))) 241s + 241s + # no entries indexed 241s + A[integer(0), integer(0), integer(0)] <- 99 241s + A[matrix(, 0, 3)] <- 99 241s + 241s + if(FULLTEST) { # re-check with randomised data 241s + ## .......... a possible application in spatstat 241s + ## n <- npoints(cells) 241s + ## cl10 <- as.data.frame(closepairs(cells, 0.1)) 241s + ## cl12 <- as.data.frame(closepairs(cells, 0.12)) 241s + ## ........... 241s + n <- 42 241s + ii <- sample(1:n, 20) 241s + jj <- sample(1:n, 20) 241s + cl12 <- data.frame(i=ii, j=jj) 241s + cl10 <- data.frame(i=ii[1:15], j=jj[1:15]) 241s + ## ........... 241s + cl10$k <- 1 241s + cl12$k <- 2 241s + cl <- rbind(cl10, cl12) 241s + Z <- with(cl, sparse3Darray(i=i, j=j, k=k, x=1, dims=c(n,n,2))) 241s + dimnames(Z) <- list(NULL, NULL, c("r=0.1", "r=0.12")) 241s + Z <- aperm(Z, c(3,1,2)) 241s + stopifnot(all(sumsymouterSparse(Z) == sumsymouter(as.array(Z)))) 241s + } 241s + 241s + ## complex valued arrays 241s + Mcplx <- sparse3Darray(i=1:3, j=c(3,1,2), k=4:2, 241s + x=runif(3)+runif(3)*1i, dims=rep(4, 3)) 241s + print(Mcplx) 241s + 241s + 241s + #' ----------- sparsecommon.R ----------------------- 241s + B <- sparseMatrix(i=1:3, j=3:1, x= 10 * (1:3), dims=c(4,4)) 241s + #' (and using sparse 3D array M and sparse vector V from above) 241s + V2 <- sparseVector(i=c(2,3,6),x=4:6, length=7) # different pattern 241s + check.anySparseVector(V2, 10, fatal=FALSE) 241s + 241s + Bmap <- mapSparseEntries(B, 1, 4:1) 241s + Mmap1 <- mapSparseEntries(M, 1, 5:1, across=3) 241s + Mmap2 <- mapSparseEntries(M, 3, 2:1, conform=FALSE) 241s + Mmap3 <- mapSparseEntries(M, 1, matrix(1:10, 5, 2), across=3) 241s + 241s + Vmap <- mapSparseEntries(V, 1, V2) 241s + Vmap <- mapSparseEntries(V, 1, 8) 241s + Vthrice <- expandSparse(V, 3) 241s + VthriceT <- expandSparse(V, 3, 1) 241s + VF <- as.vector(V) # non-sparse 241s + VFmap <- mapSparseEntries(VF, 1, V2) 241s + VFmap <- mapSparseEntries(VF, 1, 8) 241s + VFthrice <- expandSparse(VF, 3) 241s + VFthriceT <- expandSparse(VF, 3, 1) 241s + VFthriceX <- expandSparse(VF, 3, 2) 241s + 241s + VV <- sparseVectorCumul(rep(1:3,2), rep(c(3,1,2), 2), 5) 241s + 241s + Vsum <- applySparseEntries(V, sum) 241s + Bdouble <- applySparseEntries(B, function(x) { 2 * x }) 241s + Mminus <- applySparseEntries(M, function(x) -x) 241s + 241s + VX <- expandSparse(B, 3, 1) 241s + VX <- expandSparse(B, 3, 2) 241s + VX <- expandSparse(B, 3, 3) 241s + 241s + # empty sparse matrices/arrays 241s + Bempty <- B 241s + Bempty[] <- 0 241s + mapSparseEntries(Bempty, 1, 42) 241s + Mempty <- M 241s + Mempty[] <- 0 241s + Mmap1 <- mapSparseEntries(Mempty, 1, 5:1, across=3) 241s + Mmap2 <- mapSparseEntries(Mempty, 3, 2:1, conform=FALSE) 241s + Mmap3 <- mapSparseEntries(Mempty, 1, matrix(1:10, 5, 2), across=3) 241s + 241s + #' -------------- sparselinalg.R ------------------------- 241s + U <- aperm(M,c(3,1,2)) # 2 x 5 x 5 241s + UU <- sumsymouterSparse(U, dbg=TRUE) 241s + w <- matrix(0, 5, 5) 241s + w[cbind(1:3,2:4)] <- 0.5 241s + w <- as(w, "sparseMatrix") 241s + UU <- sumsymouterSparse(U, w, dbg=TRUE) 241s + Uempty <- sparse3Darray(dims=c(2,5,5)) 241s + UU <- sumsymouterSparse(Uempty, w, dbg=TRUE) 241s + #' complex 241s + Ucom <- U + U * 1i 241s + UU <- sumsymouterSparse(Ucom) 241s + UU <- sumsymouterSparse(Ucom, w) 241s + #' 241s + } 241s + 241s + ## 1 x 1 x 1 arrays 241s + M1 <- sparse3Darray(i=1, j=1, k=1, x=42, dims=rep(1,3)) 241s + M0 <- sparse3Darray( dims=rep(1,3)) 241s + i1 <- matrix(1, 1, 3) 241s + a1 <- M1[i1] 241s + a0 <- M0[i1] 241s + A <- array(runif(75) * (runif(75) < 0.7), dim=c(3,5,5)) 241s + M <- as.sparse3Darray(A) 241s + M[rep(1,3), c(1,1,2), rep(2, 3)] 241s + }) 241s + 241s + } 241s Sparse 3D array of dimensions 4x4x4 241s 241s [ , , 1] 241s 241s [1,] . . . . 241s [2,] . . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s [ , , 2] 241s 241s [1,] . . . . 241s [2,] . . . . 241s [3,] . 0.5541535 . . 241s [4,] . . . . 241s 241s [ , , 3] 241s 241s [1,] . . . . 241s [2,] 0.2204373 . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s [ , , 4] 241s 241s [1,] . . 0.3697316 . 241s [2,] . . . . 241s [3,] . . . . 241s [4,] . . . . 241s Sparse 3D array of dimensions 4x4x4 241s Complex-valued 241s Real component: 241s 241s [ , , 1] 241s 241s [1,] . . . . 241s [2,] . . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s [ , , 2] 241s 241s [1,] . . . . 241s [2,] . . . . 241s [3,] . 0.3153043 . . 241s [4,] . . . . 241s 241s [ , , 3] 241s 241s [1,] . . . . 241s [2,] 0.6115402 . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s [ , , 4] 241s 241s [1,] . . 0.6429393 . 241s [2,] . . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s 241s Imaginary component: 241s 241s [ , , 1] 241s 241s [1,] . . . . 241s [2,] . . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s [ , , 2] 241s 241s [1,] . . . . 241s [2,] . . . . 241s [3,] . 0.1397266 . . 241s [4,] . . . . 241s 241s [ , , 3] 241s 241s [1,] . . . . 241s [2,] 0.9655444 . . . 241s [3,] . . . . 241s [4,] . . . . 241s 241s [ , , 4] 241s 241s [1,] . . 0.5347585 . 241s [2,] . . . . 241s [3,] . . . . 241s [4,] . . . . 241s ----------------- Data --------------------- 241s i j k value 241s 2 0 0 2 1 241s 7 1 1 0 1 241s 3 0 1 2 2 241s 11 1 1 2 1 241s 13 1 1 3 1 241s 15 1 1 4 1 241s 8 1 2 0 2 241s 1 0 2 1 3 241s 10 1 2 1 2 241s 14 1 2 3 2 241s 16 1 2 4 2 241s 5 0 3 2 4 241s 6 0 4 2 5 241s -------------- Reordered data -------------- 241s i j k value 241s 7 1 1 0 1 241s 8 1 2 0 2 241s 1 0 2 1 3 241s 10 1 2 1 2 241s 2 0 0 2 1 241s 3 0 1 2 2 241s 11 1 1 2 1 241s 5 0 3 2 4 241s 6 0 4 2 5 241s 13 1 1 3 1 241s 14 1 2 3 2 241s 15 1 1 4 1 241s 16 1 2 4 2 241s Calling...... 241s ---------- Reordered: ------------------- 241s 0 [1, 1, 0] = 1.000000 241s 1 [1, 2, 0] = 2.000000 241s 2 [0, 2, 1] = 3.000000 241s 3 [1, 2, 1] = 2.000000 241s 4 [0, 0, 2] = 1.000000 241s 5 [0, 1, 2] = 2.000000 241s 6 [1, 1, 2] = 1.000000 241s 7 [0, 3, 2] = 4.000000 241s 8 [0, 4, 2] = 5.000000 241s 9 [1, 1, 3] = 1.000000 241s 10 [1, 2, 3] = 2.000000 241s 11 [1, 1, 4] = 1.000000 241s 12 [1, 2, 4] = 2.000000 241s Entry 0: [, 0, 2] 241s lstart=0, lend=0 241s tstart=1 241s kt[tstart]=0, jt[tstart]=2 241s tend=1 241s Entry 0: [0, 0, 2] = 1.000000 241s -- matches entry 1: [1, 2, 0] = 2.000000 241s ++ 2.000000 241s Entry 1: [, 1, 0] 241s lstart=1, lend=1 241s tstart=2 241s kt[tstart]=1, jt[tstart]=2 241s Entry 2: [, 1, 2] 241s lstart=2, lend=3 241s tstart=2 241s kt[tstart]=1, jt[tstart]=2 241s tend=3 241s Entry 2: [0, 1, 2] = 2.000000 241s -- matches entry 2: [0, 2, 1] = 3.000000 241s ++ 6.000000 241s -- matches entry 3: [1, 2, 1] = 2.000000 241s ++ 4.000000 241s Entry 3: [1, 1, 2] = 1.000000 241s -- matches entry 2: [0, 2, 1] = 3.000000 241s ++ 3.000000 241s -- matches entry 3: [1, 2, 1] = 2.000000 241s ++ 2.000000 241s Entry 4: [, 1, 3] 241s lstart=4, lend=4 241s tstart=4 241s kt[tstart]=2, jt[tstart]=0 241s Entry 5: [, 1, 4] 241s lstart=5, lend=5 241s tstart=4 241s kt[tstart]=2, jt[tstart]=0 241s Entry 6: [, 2, 0] 241s lstart=6, lend=6 241s tstart=4 241s kt[tstart]=2, jt[tstart]=0 241s tend=4 241s Entry 6: [1, 2, 0] = 2.000000 241s -- matches entry 4: [0, 0, 2] = 1.000000 241s ++ 2.000000 241s Entry 7: [, 2, 1] 241s lstart=7, lend=8 241s tstart=5 241s kt[tstart]=2, jt[tstart]=1 241s tend=6 241s Entry 7: [0, 2, 1] = 3.000000 241s -- matches entry 5: [0, 1, 2] = 2.000000 241s ++ 6.000000 241s -- matches entry 6: [1, 1, 2] = 1.000000 241s ++ 3.000000 241s Entry 8: [1, 2, 1] = 2.000000 241s -- matches entry 5: [0, 1, 2] = 2.000000 241s ++ 4.000000 241s -- matches entry 6: [1, 1, 2] = 1.000000 241s ++ 2.000000 241s Entry 9: [, 2, 3] 241s lstart=9, lend=9 241s tstart=7 241s kt[tstart]=2, jt[tstart]=3 241s tend=7 241s Entry 9: [1, 2, 3] = 2.000000 241s -- matches entry 7: [0, 3, 2] = 4.000000 241s ++ 8.000000 241s Entry 10: [, 2, 4] 241s lstart=10, lend=10 241s tstart=8 241s kt[tstart]=2, jt[tstart]=4 241s tend=8 241s Entry 10: [1, 2, 4] = 2.000000 241s -- matches entry 8: [0, 4, 2] = 5.000000 241s ++ 10.000000 241s Entry 11: [, 3, 2] 241s lstart=11, lend=11 241s tstart=10 241s kt[tstart]=3, jt[tstart]=2 241s tend=10 241s Entry 11: [0, 3, 2] = 4.000000 241s -- matches entry 10: [1, 2, 3] = 2.000000 241s ++ 8.000000 241s Entry 12: [, 4, 2] 241s lstart=12, lend=12 241s tstart=12 241s kt[tstart]=4, jt[tstart]=2 241s tend=12 241s Entry 12: [0, 4, 2] = 5.000000 241s -- matches entry 12: [1, 2, 4] = 2.000000 241s ++ 10.000000 241s ----------------- Data --------------------- 241s i j k value 241s 2 0 0 2 1 241s 7 1 1 0 1 241s 3 0 1 2 2 241s 11 1 1 2 1 241s 13 1 1 3 1 241s 15 1 1 4 1 241s 8 1 2 0 2 241s 1 0 2 1 3 241s 10 1 2 1 2 241s 14 1 2 3 2 241s 16 1 2 4 2 241s 5 0 3 2 4 241s 6 0 4 2 5 241s -------------- Reordered data -------------- 241s i j k value 241s 7 1 1 0 1 241s 8 1 2 0 2 241s 1 0 2 1 3 241s 10 1 2 1 2 241s 2 0 0 2 1 241s 3 0 1 2 2 241s 11 1 1 2 1 241s 5 0 3 2 4 241s 6 0 4 2 5 241s 13 1 1 3 1 241s 14 1 2 3 2 241s 15 1 1 4 1 241s 16 1 2 4 2 241s Calling...... 241s ---------- Reordered: ------------------- 241s 0 [1, 1, 0] = 1.000000 241s 1 [1, 2, 0] = 2.000000 241s 2 [0, 2, 1] = 3.000000 241s 3 [1, 2, 1] = 2.000000 241s 4 [0, 0, 2] = 1.000000 241s 5 [0, 1, 2] = 2.000000 241s 6 [1, 1, 2] = 1.000000 241s 7 [0, 3, 2] = 4.000000 241s 8 [0, 4, 2] = 5.000000 241s 9 [1, 1, 3] = 1.000000 241s 10 [1, 2, 3] = 2.000000 241s 11 [1, 1, 4] = 1.000000 241s 12 [1, 2, 4] = 2.000000 241s Entry 0: [, 0, 2] 241s Entry 1: [, 1, 0] 241s Entry 2: [, 1, 2] 241s lstart=2, lend=3 241s tstart=2 241s kt[tstart]=1, jt[tstart]=2 241s tend=3 241s Entry 2: [0, 1, 2] = 2.000000 241s -- matches entry 2: [0, 2, 1] = 3.000000 241s ++ 3.000000 241s -- matches entry 3: [1, 2, 1] = 2.000000 241s ++ 2.000000 241s Entry 3: [1, 1, 2] = 1.000000 241s -- matches entry 2: [0, 2, 1] = 3.000000 241s ++ 1.500000 241s -- matches entry 3: [1, 2, 1] = 2.000000 241s ++ 1.000000 241s Entry 4: [, 1, 3] 241s Entry 5: [, 1, 4] 241s Entry 6: [, 2, 0] 241s Entry 7: [, 2, 1] 241s Entry 8: [, 2, 1] 241s Entry 9: [, 2, 3] 241s lstart=9, lend=9 241s tstart=7 241s kt[tstart]=2, jt[tstart]=3 241s tend=7 241s Entry 9: [1, 2, 3] = 2.000000 241s -- matches entry 7: [0, 3, 2] = 4.000000 241s ++ 4.000000 241s Entry 10: [, 2, 4] 241s Entry 11: [, 3, 2] 241s Entry 12: [, 4, 2] 241s Sparse 3D array of dimensions 3x3x3 241s 241s [ , , 1] 241s 241s [1,] . . 0.3092149 241s [2,] . . 0.3092149 241s [3,] . . 0.3092149 241s 241s [ , , 2] 241s 241s [1,] . . 0.3092149 241s [2,] . . 0.3092149 241s [3,] . . 0.3092149 241s 241s [ , , 3] 241s 241s [1,] . . 0.3092149 241s [2,] . . 0.3092149 241s [3,] . . 0.3092149 241s > 241s > 241s Warning messages: 241s 1: indices exceed array bounds; extending the array dimensions 241s 2: complex-valued sparse 3D arrays are supported in spatstat, but complex-valued sparse matrices are not yet supported by the Matrix package 241s 3: complex-valued sparse 3D arrays are supported in spatstat, but complex-valued sparse matrices are not yet supported by the Matrix package 241s 4: complex-valued sparse 3D arrays are supported in spatstat, but complex-valued sparse matrices are not yet supported by the Matrix package 241s 5: In sumsymouterSparse(Ucom) : imaginary parts discarded in coercion 241s 6: In sumsymouterSparse(Ucom, w) : imaginary parts discarded in coercion 242s autopkgtest [20:19:55]: test run-unit-test: -----------------------] 242s run-unit-test PASS 242s autopkgtest [20:19:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 243s autopkgtest [20:19:56]: test pkg-r-autopkgtest: preparing testbed 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 244s Starting pkgProblemResolver with broken count: 0 244s Starting 2 pkgProblemResolver with broken count: 0 244s Done 245s The following additional packages will be installed: 245s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 245s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 245s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 245s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 245s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 245s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 245s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 245s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 245s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 245s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 245s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 245s Suggested packages: 245s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 245s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 245s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 245s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 245s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 245s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 245s texlive-latex-recommended texlive-latex-extra texinfo 245s Recommended packages: 245s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 245s The following NEW packages will be installed: 245s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 245s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 245s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 245s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 245s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 245s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 245s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 245s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 245s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 245s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 245s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 245s pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 245s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. 245s Need to get 92.9 MB/92.9 MB of archives. 245s After this operation, 343 MB of additional disk space will be used. 245s Get:1 /tmp/autopkgtest.NjkVyW/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 245s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 245s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 246s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 246s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 246s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 246s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 246s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 246s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 246s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 246s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 246s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 246s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 246s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 246s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 246s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 246s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 246s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 246s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 246s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 246s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 246s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 246s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 246s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 247s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 247s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 247s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 247s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 247s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 247s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 247s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 247s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 247s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 247s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 247s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 247s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 247s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 247s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 247s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 247s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 247s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 247s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 247s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 248s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 248s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 248s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 248s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 248s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 248s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 248s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 248s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 248s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 248s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 248s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 248s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 248s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 248s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 248s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 248s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 248s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 248s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 248s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 249s Fetched 92.9 MB in 3s (32.6 MB/s) 249s Selecting previously unselected package libc-dev-bin. 249s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76643 files and directories currently installed.) 249s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 249s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 249s Selecting previously unselected package linux-libc-dev:arm64. 249s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 249s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 249s Selecting previously unselected package libcrypt-dev:arm64. 249s Preparing to unpack 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249s Selecting previously unselected package libmpc3:arm64. 249s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 249s Unpacking libmpc3:arm64 (1.3.1-1) ... 249s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 249s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 249s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package cpp-13. 249s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 249s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 249s Selecting previously unselected package cpp-aarch64-linux-gnu. 249s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 249s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 249s Selecting previously unselected package cpp. 249s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 249s Unpacking cpp (4:13.2.0-7ubuntu1) ... 250s Selecting previously unselected package libcc1-0:arm64. 250s 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unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 251s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gcc-aarch64-linux-gnu. 251s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 251s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 251s Selecting previously unselected package gcc. 251s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 251s Unpacking gcc (4:13.2.0-7ubuntu1) ... 251s Selecting previously unselected package libstdc++-13-dev:arm64. 251s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 251s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package g++-13-aarch64-linux-gnu. 251s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 251s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package g++-13. 251s Preparing to unpack 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libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 251s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 251s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gfortran-13. 251s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 251s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 251s Selecting previously unselected package gfortran-aarch64-linux-gnu. 251s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 251s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 252s Selecting previously unselected package gfortran. 252s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 252s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 252s Selecting previously unselected package icu-devtools. 252s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 252s Unpacking icu-devtools (74.2-1ubuntu1) ... 252s Selecting previously unselected package libblas-dev:arm64. 252s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 252s Unpacking libblas-dev:arm64 (3.12.0-3) ... 252s Selecting previously unselected package libbz2-dev:arm64. 252s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 252s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 252s Selecting previously unselected package libicu-dev:arm64. 252s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 252s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 252s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 252s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 252s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 252s Selecting previously unselected package libjpeg8-dev:arm64. 252s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 252s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 252s Selecting previously unselected package libjpeg-dev:arm64. 252s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 252s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 252s Selecting previously unselected package liblapack-dev:arm64. 252s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 252s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 252s Selecting previously unselected package libncurses-dev:arm64. 252s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 252s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 252s Selecting previously unselected package libpcre2-16-0:arm64. 252s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 252s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 252s Selecting previously unselected package libpcre2-32-0:arm64. 252s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 252s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 252s Selecting previously unselected package libpcre2-posix3:arm64. 252s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 252s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 252s Selecting previously unselected package libpcre2-dev:arm64. 252s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 252s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 252s Selecting previously unselected package libpkgconf3:arm64. 252s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ... 252s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 252s Selecting previously unselected package zlib1g-dev:arm64. 252s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 252s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 252s Selecting previously unselected package libpng-dev:arm64. 253s Preparing to unpack .../53-libpng-dev_1.6.43-1_arm64.deb ... 253s Unpacking libpng-dev:arm64 (1.6.43-1) ... 253s Selecting previously unselected package libreadline-dev:arm64. 253s Preparing to unpack .../54-libreadline-dev_8.2-3_arm64.deb ... 253s Unpacking libreadline-dev:arm64 (8.2-3) ... 253s Selecting previously unselected package pkgconf-bin. 253s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ... 253s Unpacking pkgconf-bin (1.8.1-2) ... 253s Selecting previously unselected package pkgconf:arm64. 253s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ... 253s Unpacking pkgconf:arm64 (1.8.1-2) ... 253s Selecting previously unselected package pkg-config:arm64. 253s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ... 253s Unpacking pkg-config:arm64 (1.8.1-2) ... 253s Selecting previously unselected package liblzma-dev:arm64. 253s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ... 253s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 253s Selecting previously unselected package r-base-dev. 253s Preparing to unpack .../59-r-base-dev_4.3.2-1build1_all.deb ... 253s Unpacking r-base-dev (4.3.2-1build1) ... 253s Selecting previously unselected package pkg-r-autopkgtest. 253s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 253s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 253s Selecting previously unselected package autopkgtest-satdep. 253s Preparing to unpack .../61-2-autopkgtest-satdep.deb ... 253s Unpacking autopkgtest-satdep (0) ... 253s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 253s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 253s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 253s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 253s Setting up libpkgconf3:arm64 (1.8.1-2) ... 253s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 253s Setting up libmpc3:arm64 (1.3.1-1) ... 253s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 253s Setting up icu-devtools (74.2-1ubuntu1) ... 253s Setting up pkgconf-bin (1.8.1-2) ... 253s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 253s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 253s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 253s Setting up libnsl-dev:arm64 (1.3.0-3) ... 253s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 253s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 253s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 253s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 253s Setting up libisl23:arm64 (0.26-3) ... 253s Setting up libc-dev-bin (2.39-0ubuntu2) ... 253s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 253s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 253s Setting up libblas-dev:arm64 (3.12.0-3) ... 253s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 253s Setting up dctrl-tools (2.24-3build2) ... 253s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 253s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 253s Setting up pkgconf:arm64 (1.8.1-2) ... 253s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 253s Setting up liblapack-dev:arm64 (3.12.0-3) ... 253s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 253s Setting up pkg-config:arm64 (1.8.1-2) ... 253s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 253s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 253s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 253s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 253s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 253s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 253s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 253s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 253s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 253s Setting up cpp-13 (13.2.0-17ubuntu2) ... 253s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 253s Setting up libreadline-dev:arm64 (8.2-3) ... 253s Setting up gcc-13 (13.2.0-17ubuntu2) ... 253s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 253s Setting up cpp (4:13.2.0-7ubuntu1) ... 253s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 253s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 253s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 253s Setting up g++-13 (13.2.0-17ubuntu2) ... 253s Setting up libpng-dev:arm64 (1.6.43-1) ... 253s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 253s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 253s Setting up gcc (4:13.2.0-7ubuntu1) ... 253s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 253s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 253s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 253s Setting up gfortran (4:13.2.0-7ubuntu1) ... 253s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 253s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 253s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 253s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 253s Setting up g++ (4:13.2.0-7ubuntu1) ... 253s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 253s Setting up build-essential (12.10ubuntu1) ... 253s Setting up r-base-dev (4.3.2-1build1) ... 253s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 253s Setting up autopkgtest-satdep (0) ... 253s Processing triggers for man-db (2.12.0-3) ... 254s Processing triggers for install-info (7.1-3) ... 254s Processing triggers for libc-bin (2.39-0ubuntu2) ... 257s (Reading database ... 80202 files and directories currently installed.) 257s Removing autopkgtest-satdep (0) ... 258s autopkgtest [20:20:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 258s autopkgtest [20:20:11]: test pkg-r-autopkgtest: [----------------------- 258s Test: Try to load the R library spatstat.sparse 258s 258s R version 4.3.2 (2023-10-31) -- "Eye Holes" 258s Copyright (C) 2023 The R Foundation for Statistical Computing 258s Platform: aarch64-unknown-linux-gnu (64-bit) 258s 258s R is free software and comes with ABSOLUTELY NO WARRANTY. 258s You are welcome to redistribute it under certain conditions. 258s Type 'license()' or 'licence()' for distribution details. 258s 258s R is a collaborative project with many contributors. 258s Type 'contributors()' for more information and 258s 'citation()' on how to cite R or R packages in publications. 258s 258s Type 'demo()' for some demos, 'help()' for on-line help, or 258s 'help.start()' for an HTML browser interface to help. 258s Type 'q()' to quit R. 258s 258s > library('spatstat.sparse') 258s Loading required package: Matrix 259s Loading required package: abind 259s Loading required package: tensor 259s > 259s > 259s Other tests are currently unsupported! 259s They will be progressively added. 259s autopkgtest [20:20:12]: test pkg-r-autopkgtest: -----------------------] 260s pkg-r-autopkgtest PASS 260s autopkgtest [20:20:13]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 260s autopkgtest [20:20:13]: @@@@@@@@@@@@@@@@@@@@ summary 260s run-unit-test PASS 260s pkg-r-autopkgtest PASS 271s Creating nova instance adt-noble-arm64-r-cran-spatstat.sparse-20240316-201553-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...