0s autopkgtest [20:15:39]: starting date and time: 2024-03-16 20:15:39+0000 0s autopkgtest [20:15:39]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [20:15:39]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._icyz3au/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-spatstat.linnet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-24.secgroup --name adt-noble-arm64-r-cran-spatstat.linnet-20240316-201539-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 141s autopkgtest [20:18:00]: testbed dpkg architecture: arm64 141s autopkgtest [20:18:00]: testbed apt version: 2.7.12 141s autopkgtest [20:18:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 142s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 142s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3704 kB] 142s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 142s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 142s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 142s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 142s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 142s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 142s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4012 kB] 142s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 142s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 142s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 144s Fetched 9112 kB in 2s (5728 kB/s) 144s Reading package lists... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Calculating upgrade... 148s The following packages will be REMOVED: 148s libglib2.0-0 libssl3 148s The following NEW packages will be installed: 148s libglib2.0-0t64 libssl3t64 xdg-user-dirs 148s The following packages have been kept back: 148s curl 148s The following packages will be upgraded: 148s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 148s ubuntu-minimal ubuntu-standard 148s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 148s Need to get 4613 kB of archives. 148s After this operation, 211 kB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 148s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 148s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 148s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 149s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 149s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 149s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 149s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 149s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 149s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 149s Fetched 4613 kB in 1s (6831 kB/s) 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 150s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 150s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 150s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 150s udisks2 depends on libglib2.0-0 (>= 2.77.0). 150s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 150s python3-gi depends on libglib2.0-0 (>= 2.77.0). 150s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 150s netplan.io depends on libglib2.0-0 (>= 2.70.0). 150s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 150s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 150s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 150s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 150s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 150s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 150s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 150s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 150s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 150s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 150s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 150s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 150s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 150s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 150s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 150s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 150s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 150s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 150s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 150s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 150s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 150s fwupd depends on libglib2.0-0 (>= 2.79.0). 150s bolt depends on libglib2.0-0 (>= 2.56.0). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 150s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 150s Selecting previously unselected package libglib2.0-0t64:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 150s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 150s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 150s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 150s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 150s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 150s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 150s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 150s wget depends on libssl3 (>= 3.0.0). 150s u-boot-tools depends on libssl3 (>= 3.0.0). 150s tnftp depends on libssl3 (>= 3.0.0). 150s tcpdump depends on libssl3 (>= 3.0.0). 150s systemd-resolved depends on libssl3 (>= 3.0.0). 150s systemd depends on libssl3 (>= 3.0.0). 150s sudo depends on libssl3 (>= 3.0.0). 150s sbsigntool depends on libssl3 (>= 3.0.0). 150s rsync depends on libssl3 (>= 3.0.0). 150s python3-cryptography depends on libssl3 (>= 3.0.0). 150s openssh-server depends on libssl3 (>= 3.0.10). 150s openssh-client depends on libssl3 (>= 3.0.10). 150s mtd-utils depends on libssl3 (>= 3.0.0). 150s mokutil depends on libssl3 (>= 3.0.0). 150s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 150s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 150s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 150s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 150s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 150s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 150s libnvme1 depends on libssl3 (>= 3.0.0). 150s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 150s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 150s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 150s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 150s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 150s kmod depends on libssl3 (>= 3.0.0). 150s dhcpcd-base depends on libssl3 (>= 3.0.0). 150s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 150s 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 150s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 150s Selecting previously unselected package libssl3t64:arm64. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 150s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 150s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 151s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 151s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 151s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 151s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 151s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 151s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 151s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 151s Unpacking ubuntu-minimal (1.536) over (1.535) ... 151s Selecting previously unselected package xdg-user-dirs. 151s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 151s Unpacking xdg-user-dirs (0.18-1) ... 151s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 151s Unpacking ubuntu-standard (1.536) over (1.535) ... 152s Setting up ubuntu-minimal (1.536) ... 152s Setting up xdg-user-dirs (0.18-1) ... 152s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 152s Setting up libtirpc-common (1.3.4+ds-1.1) ... 152s Setting up ubuntu-standard (1.536) ... 152s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 152s No schema files found: doing nothing. 152s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 152s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 152s Setting up openssl (3.0.13-0ubuntu1) ... 152s Setting up readline-common (8.2-3.1) ... 152s Processing triggers for man-db (2.12.0-3) ... 153s Processing triggers for install-info (7.1-3) ... 153s Processing triggers for libc-bin (2.39-0ubuntu2) ... 154s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 156s sh: Attempting to set up Debian/Ubuntu apt sources automatically 156s sh: Distribution appears to be Ubuntu 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s eatmydata is already the newest version (131-1). 158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s dbus is already the newest version (1.14.10-4ubuntu1). 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s rng-tools-debian is already the newest version (2.4). 160s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 161s The following packages will be REMOVED: 161s cloud-init* python3-configobj* python3-debconf* 161s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 161s After this operation, 3252 kB disk space will be freed. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 161s Removing cloud-init (24.1.1-0ubuntu1) ... 162s Removing python3-configobj (5.0.8-3) ... 162s Removing python3-debconf (1.5.86) ... 162s Processing triggers for man-db (2.12.0-3) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 162s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 163s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 163s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 163s invoke-rc.d: policy-rc.d denied execution of try-restart. 163s Reading package lists... 163s Building dependency tree... 163s Reading state information... 164s linux-generic is already the newest version (6.8.0-11.11+1). 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 165s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 165s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 167s Reading package lists... 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Calculating upgrade... 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s autopkgtest [20:18:27]: rebooting testbed after setup commands that affected boot 387s autopkgtest [20:22:06]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 390s autopkgtest [20:22:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.linnet 393s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-spatstat.linnet 3.1-3-1 (dsc) [2469 B] 393s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-spatstat.linnet 3.1-3-1 (tar) [275 kB] 393s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-spatstat.linnet 3.1-3-1 (diff) [3476 B] 394s gpgv: Signature made Sun Oct 29 19:22:37 2023 UTC 394s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 394s gpgv: issuer "tille@debian.org" 394s gpgv: Can't check signature: No public key 394s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.linnet_3.1-3-1.dsc: no acceptable signature found 394s autopkgtest [20:22:13]: testing package r-cran-spatstat.linnet version 3.1-3-1 394s autopkgtest [20:22:13]: build not needed 395s autopkgtest [20:22:14]: test run-unit-test: preparing testbed 396s Reading package lists... 397s Building dependency tree... 397s Reading state information... 397s Starting pkgProblemResolver with broken count: 0 397s Starting 2 pkgProblemResolver with broken count: 0 397s Done 398s The following additional packages will be installed: 398s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 398s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 398s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 398s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 398s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 398s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 398s libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-abind r-cran-deldir 398s r-cran-goftest r-cran-lattice r-cran-locfit r-cran-matrix r-cran-mgcv 398s r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat 398s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 398s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 398s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-survival r-cran-tensor 398s unzip x11-common xdg-utils zip 398s Suggested packages: 398s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 398s r-cran-interp r-cran-gam 398s Recommended packages: 398s r-recommended r-base-dev r-doc-html r-cran-sm r-cran-gsl r-cran-spatial 398s r-cran-nleqslv r-cran-glmnet libfile-mimeinfo-perl libnet-dbus-perl 398s libx11-protocol-perl x11-utils x11-xserver-utils 398s The following NEW packages will be installed: 398s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 398s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 398s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 398s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 398s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 398s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 398s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 398s r-base-core r-cran-abind r-cran-deldir r-cran-goftest r-cran-lattice 398s r-cran-locfit r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-polyclip 398s r-cran-rpart r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 398s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 398s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils 398s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip 399s 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. 399s Need to get 76.4 MB/76.4 MB of archives. 399s After this operation, 126 MB of additional disk space will be used. 399s Get:1 /tmp/autopkgtest.C8fBFc/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B] 399s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 399s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 399s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 399s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 399s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 399s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 399s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 399s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 399s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 399s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 399s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 399s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 399s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 399s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 399s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 399s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 399s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 399s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 399s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 399s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 399s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 399s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 400s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 400s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 400s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 400s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 400s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 400s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 400s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 400s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 400s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 400s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 400s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 400s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 400s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 400s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 400s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 400s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 400s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 400s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 400s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 400s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 400s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 400s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 400s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 400s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 400s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 400s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 401s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 401s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 401s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 401s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 401s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 401s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 401s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 401s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 401s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 401s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.geom arm64 3.2-8-1 [3805 kB] 401s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.random arm64 3.2-2-1 [1127 kB] 401s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 401s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 401s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 401s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.model arm64 3.2-8-1 [3289 kB] 401s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.linnet arm64 3.1-3-1 [1404 kB] 401s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 403s Preconfiguring packages ... 403s Fetched 76.4 MB in 3s (26.1 MB/s) 403s Selecting previously unselected package fonts-dejavu-mono. 403s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 403s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 403s Unpacking fonts-dejavu-mono (2.37-8) ... 403s Selecting previously unselected package fonts-dejavu-core. 403s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 404s Unpacking fonts-dejavu-core (2.37-8) ... 404s Selecting previously unselected package fontconfig-config. 404s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 404s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package libfontconfig1:arm64. 404s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 404s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package fontconfig. 404s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 404s Unpacking fontconfig (2.15.0-1ubuntu1) ... 404s Selecting previously unselected package libblas3:arm64. 404s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 404s Unpacking libblas3:arm64 (3.12.0-3) ... 404s Selecting previously unselected package libpixman-1-0:arm64. 404s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ... 404s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 404s Selecting previously unselected package libxcb-render0:arm64. 405s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ... 405s Unpacking libxcb-render0:arm64 (1.15-1) ... 405s Selecting previously unselected package libxcb-shm0:arm64. 405s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ... 405s Unpacking libxcb-shm0:arm64 (1.15-1) ... 405s Selecting previously unselected package libxrender1:arm64. 405s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 405s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 405s Selecting previously unselected package libcairo2:arm64. 405s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ... 405s Unpacking libcairo2:arm64 (1.18.0-1) ... 405s Selecting previously unselected package libdatrie1:arm64. 405s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ... 405s Unpacking libdatrie1:arm64 (0.2.13-3) ... 405s Selecting previously unselected package libdeflate0:arm64. 405s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ... 405s Unpacking libdeflate0:arm64 (1.19-1) ... 405s Selecting previously unselected package libgfortran5:arm64. 405s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 405s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 405s Selecting previously unselected package libgomp1:arm64. 405s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 405s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 405s Selecting previously unselected package libgraphite2-3:arm64. 405s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ... 405s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 405s Selecting previously unselected package libharfbuzz0b:arm64. 405s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ... 405s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 405s Selecting previously unselected package x11-common. 405s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ... 405s Unpacking x11-common (1:7.7+23ubuntu2) ... 406s Selecting previously unselected package libice6:arm64. 406s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ... 406s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 406s Selecting previously unselected package libjpeg-turbo8:arm64. 406s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 406s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 406s Selecting previously unselected package libjpeg8:arm64. 406s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 406s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 406s Selecting previously unselected package liblapack3:arm64. 406s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ... 406s Unpacking liblapack3:arm64 (3.12.0-3) ... 406s Selecting previously unselected package liblerc4:arm64. 406s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 406s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 406s Selecting previously unselected package libthai-data. 406s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ... 406s Unpacking libthai-data (0.1.29-2) ... 406s Selecting previously unselected package libthai0:arm64. 406s Preparing to unpack .../24-libthai0_0.1.29-2_arm64.deb ... 406s Unpacking libthai0:arm64 (0.1.29-2) ... 406s Selecting previously unselected package libpango-1.0-0:arm64. 406s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 406s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 406s Selecting previously unselected package libpangoft2-1.0-0:arm64. 406s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 406s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 406s Selecting previously unselected package libpangocairo-1.0-0:arm64. 406s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 406s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 406s Selecting previously unselected package libpaper1:arm64. 406s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ... 406s Unpacking libpaper1:arm64 (1.1.29) ... 406s Selecting previously unselected package libpaper-utils. 406s Preparing to unpack .../29-libpaper-utils_1.1.29_arm64.deb ... 406s Unpacking libpaper-utils (1.1.29) ... 406s Selecting previously unselected package libsharpyuv0:arm64. 406s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ... 406s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 406s Selecting previously unselected package libsm6:arm64. 406s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ... 406s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 406s Selecting previously unselected package libtcl8.6:arm64. 406s Preparing to unpack .../32-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 406s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 407s Selecting previously unselected package libjbig0:arm64. 407s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 407s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 407s Selecting previously unselected package libwebp7:arm64. 407s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ... 407s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 407s Selecting previously unselected package libtiff6:arm64. 407s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 407s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 407s Selecting previously unselected package libxft2:arm64. 407s Preparing to unpack .../36-libxft2_2.3.6-1_arm64.deb ... 407s Unpacking libxft2:arm64 (2.3.6-1) ... 407s Selecting previously unselected package libxss1:arm64. 407s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build2_arm64.deb ... 407s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 407s Selecting previously unselected package libtk8.6:arm64. 407s Preparing to unpack .../38-libtk8.6_8.6.13-2_arm64.deb ... 407s Unpacking libtk8.6:arm64 (8.6.13-2) ... 407s Selecting previously unselected package libxt6:arm64. 407s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ... 407s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 407s Selecting previously unselected package zip. 407s Preparing to unpack .../40-zip_3.0-13_arm64.deb ... 407s Unpacking zip (3.0-13) ... 407s Selecting previously unselected package unzip. 407s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ... 407s Unpacking unzip (6.0-28ubuntu3) ... 407s Selecting previously unselected package xdg-utils. 407s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 407s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 407s Selecting previously unselected package r-base-core. 407s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ... 407s Unpacking r-base-core (4.3.2-1build1) ... 408s Selecting previously unselected package r-cran-abind. 408s Preparing to unpack .../44-r-cran-abind_1.4-5-2_all.deb ... 408s Unpacking r-cran-abind (1.4-5-2) ... 408s Selecting previously unselected package r-cran-deldir. 408s Preparing to unpack .../45-r-cran-deldir_2.0-4-1_arm64.deb ... 408s Unpacking r-cran-deldir (2.0-4-1) ... 408s Selecting previously unselected package r-cran-goftest. 408s Preparing to unpack .../46-r-cran-goftest_1.2-3-1_arm64.deb ... 408s Unpacking r-cran-goftest (1.2-3-1) ... 408s Selecting previously unselected package r-cran-lattice. 408s Preparing to unpack .../47-r-cran-lattice_0.22-5-1_arm64.deb ... 408s Unpacking r-cran-lattice (0.22-5-1) ... 408s Selecting previously unselected package r-cran-locfit. 408s Preparing to unpack .../48-r-cran-locfit_1.5-9.8-1_arm64.deb ... 408s Unpacking r-cran-locfit (1.5-9.8-1) ... 408s Selecting previously unselected package r-cran-matrix. 408s Preparing to unpack .../49-r-cran-matrix_1.6-5-1_arm64.deb ... 408s Unpacking r-cran-matrix (1.6-5-1) ... 408s Selecting previously unselected package r-cran-nlme. 408s Preparing to unpack .../50-r-cran-nlme_3.1.164-1_arm64.deb ... 408s Unpacking r-cran-nlme (3.1.164-1) ... 408s Selecting previously unselected package r-cran-mgcv. 408s Preparing to unpack .../51-r-cran-mgcv_1.9-1-1_arm64.deb ... 408s Unpacking r-cran-mgcv (1.9-1-1) ... 408s Selecting previously unselected package r-cran-polyclip. 408s Preparing to unpack .../52-r-cran-polyclip_1.10-6-1_arm64.deb ... 408s Unpacking r-cran-polyclip (1.10-6-1) ... 408s Selecting previously unselected package r-cran-survival. 408s Preparing to unpack .../53-r-cran-survival_3.5-8-1_arm64.deb ... 408s Unpacking r-cran-survival (3.5-8-1) ... 408s Selecting previously unselected package r-cran-rpart. 408s Preparing to unpack .../54-r-cran-rpart_4.1.23-1_arm64.deb ... 408s Unpacking r-cran-rpart (4.1.23-1) ... 408s Selecting previously unselected package r-cran-spatstat.utils. 408s Preparing to unpack .../55-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 408s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 408s Selecting previously unselected package r-cran-spatstat.data. 408s Preparing to unpack .../56-r-cran-spatstat.data_3.0-4-1_all.deb ... 408s Unpacking r-cran-spatstat.data (3.0-4-1) ... 408s Selecting previously unselected package r-cran-spatstat.geom. 409s Preparing to unpack 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Foundation for Statistical Computing 432s Platform: aarch64-unknown-linux-gnu (64-bit) 432s 432s R is free software and comes with ABSOLUTELY NO WARRANTY. 432s You are welcome to redistribute it under certain conditions. 432s Type 'license()' or 'licence()' for distribution details. 432s 432s R is a collaborative project with many contributors. 432s Type 'contributors()' for more information and 432s 'citation()' on how to cite R or R packages in publications. 432s 432s Type 'demo()' for some demos, 'help()' for on-line help, or 432s 'help.start()' for an HTML browser interface to help. 432s Type 'q()' to quit R. 432s 432s > #' 432s > #' Header for all (concatenated) test files 432s > #' 432s > #' Require spatstat.linnet 432s > #' Obtain environment variable controlling tests. 432s > #' 432s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 432s > 432s > require(spatstat.linnet) 432s Loading required package: spatstat.linnet 432s Loading required package: spatstat.data 433s Loading required package: spatstat.geom 434s spatstat.geom 3.2-8 434s Loading required package: spatstat.random 434s spatstat.random 3.2-2 434s Loading required package: spatstat.explore 434s Loading required package: nlme 434s spatstat.explore 3.2-5 434s Loading required package: spatstat.model 434s Loading required package: rpart 434s spatstat.model 3.2-8 434s spatstat.linnet 3.1-3 434s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 434s > ALWAYS <- TRUE 434s > cat(paste("--------- Executing", 434s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 434s + "test code -----------\n")) 434s --------- Executing **RESTRICTED** subset of test code ----------- 434s > #' tests/aucroc.R 434s > #' 434s > #' AUC and ROC code 434s > #' 434s > #' $Revision: 1.6 $ $Date: 2020/11/02 06:26:45 $ 434s > 434s > local({ 434s + if(FULLTEST) { 434s + A <- roc(spiders, "x") 434s + B <- auc(spiders, "y") 434s + fut <- lppm(spiders ~ I(y-x)) 434s + f <- roc(fut) 434s + g <- auc(fut) 434s + } 434s + }) 434s > ## tests/cdf.test.R 434s > 434s > 434s > local({ 434s + NSIM <- 9 434s + op <- spatstat.options(ndummy.min=16, npixel=32) 434s + op <- spatstat.options(ndummy.min=16, npixel=32) 434s + if(ALWAYS) { 434s + ## (3) linear networks 434s + set.seed(42) 434s + X <- runiflpp(20, simplenet) 434s + cdf.test(X, "x") 434s + if(FULLTEST) { 434s + cdf.test(X, "x", "cvm") 434s + cdf.test(X %mark% runif(20), "x") 434s + } 434s + fit <- lppm(X ~1) 434s + cdf.test(fit, "y", "cvm", nsim=NSIM) 434s + if(FULLTEST) { 434s + cdf.test(fit, "y", nsim=NSIM) 434s + cdf.test(fit, "y", "ad", nsim=NSIM) 434s + } 434s + if(FULLTEST) { 434s + ## marked 434s + cdf.test(chicago, "y") 434s + cdf.test(subset(chicago, marks != "assault"), "y") 434s + } 434s + } 434s + reset.spatstat.options() 434s + }) 434s > 434s > 434s > #' 434s > #' tests/cluck.R 434s > #' 434s > #' Tests of "click*" functions 434s > #' using queueing feature of spatstatLocator 434s > #' 434s > #' $Revision: 1.8 $ $Date: 2022/10/23 00:45:36 $ 434s > 434s > local({ 434s + Y <- coords(runiflpp(6, simplenet)) 434s + if(FULLTEST) { 434s + #' clicklpp 434s + spatstat.utils::queueSpatstatLocator(Y) 434s + XL <- clicklpp(simplenet) 434s + } 434s + if(ALWAYS) { 434s + spatstat.utils::queueSpatstatLocator(Y) 434s + XM <- clicklpp(simplenet, n=3, types=c("a", "b")) 434s + } 434s + if(ALWAYS) { 434s + #' lineardisc 434s + plot(simplenet) 434s + spatstat.utils::queueSpatstatLocator(as.ppp(runiflpp(1, simplenet))) 434s + V <- lineardisc(simplenet, r=0.3) 434s + } 434s + }) 435s Ready to click.. 435s There were 24 warnings (use warnings() to see them) 435s > #' 435s > #' tests/disconnected.R 435s > #' 435s > #' disconnected linear networks 435s > #' 435s > #' $Revision: 1.4 $ $Date: 2020/04/28 12:58:26 $ 435s > 435s > 435s > local({ 435s + 435s + #' disconnected network 435s + m <- simplenet$m 435s + m[4,5] <- m[5,4] <- m[6,10] <- m[10,6] <- m[4,6] <- m[6,4] <- FALSE 435s + L <- linnet(vertices(simplenet), m) 435s + if(FULLTEST) { 435s + L 435s + summary(L) 435s + is.connected(L) 435s + Z <- connected(L, what="components") 435s + } 435s + 435s + #' point pattern with no points in one connected component 435s + set.seed(42) 435s + X <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L) 435s + B <- lineardirichlet(X) 435s + if(FULLTEST) { 435s + plot(B) 435s + summary(B) 435s + } 435s + if(ALWAYS) { 435s + D <- pairdist(X) 435s + A <- nndist(X) 435s + } 435s + if(FULLTEST) { 435s + H <- nnwhich(X) 435s + Y <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L) 435s + G <- nncross(X, Y) 435s + J <- crossdist(X, Y) 435s + plot(distfun(X)) # includes evaluation of nncross(what="dist") 435s + } 435s + 435s + #' K functions in disconnected network 435s + if(ALWAYS) { 435s + K <- linearK(X) 435s + lamX <- intensity(X) 435s + nX <- npoints(X) 435s + KI <- linearKinhom(X, lambda=rep(lamX, nX)) 435s + P <- linearpcf(X) 435s + PJ <- linearpcfinhom(X, lambda=rep(lamX, nX)) 435s + } 435s + Y <- X %mark% factor(rep(1:2, nX)[1:nX]) 435s + if(FULLTEST) { 435s + Y1 <- split(Y)[[1]] 435s + Y2 <- split(Y)[[2]] 435s + KY <- linearKcross(Y) 435s + PY <- linearpcfcross(Y) 435s + KYI <- linearKcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)), 435s + lambdaJ=rep(intensity(Y2), npoints(Y2))) 435s + PYI <- linearpcfcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)), 435s + lambdaJ=rep(intensity(Y2), npoints(Y2))) 435s + } 435s + 435s + #' internal utilities 435s + if(FULLTEST) { 435s + K <- ApplyConnected(X, linearK, rule=function(...) list()) 435s + } 435s + }) 435s > 435s > 435s > # 435s > # tests/envelopes.R 435s > # 435s > # Test validity of envelope data 435s > # 435s > # $Revision: 1.28 $ $Date: 2022/11/24 01:35:26 $ 435s > # 435s > 435s > local({ 435s + 435s + 435s + 435s + 435s + 435s + 435s + 435s + 435s + 435s + if(FULLTEST) { 435s + X <- runiflpp(10, simplenet) 435s + Xr <- X %mark% runif(10) 435s + Xc <- X %mark% factor(letters[c(1:4,3,2,4:1)]) 435s + X2 <- X %mark% data.frame(height=runif(10), width=runif(10)) 435s + 435s + E <- envelope(X, linearK, nsim=9) 435s + Er <- envelope(Xr, linearK, nsim=9) 435s + Ec <- envelope(Xc, linearK, nsim=9) 435s + E2 <- envelope(X2, linearK, nsim=9) 435s + 435s + Erf <- envelope(Xr, linearK, nsim=9, fix.n=TRUE) 435s + E2f <- envelope(X2, linearK, nsim=9, fix.n=TRUE) 435s + 435s Warning message: 435s Network is not connected 435s + Ecf <- envelope(Xc, linearK, nsim=9, fix.n=TRUE) 435s + Ecm <- envelope(Xc, linearKcross, nsim=9, fix.n=TRUE, fix.marks=TRUE) 435s + 435s + fut <- lppm(Xc ~ marks) 435s + EEf <- envelope(fut, linearK, fix.n=TRUE) 435s + EEm <- envelope(fut, linearKcross, fix.n=TRUE, fix.marks=TRUE) 435s + } 435s + 435s + ## close 'local' 435s + }) 435s > # 435s > # tests/func.R 435s > # 435s > # $Revision: 1.9 $ $Date: 2022/10/23 00:48:40 $ 435s > # 435s > # Tests of 'funxy' infrastructure etc 435s > 435s > if(FULLTEST) { 435s + local({ 435s + ## Check the peculiar function-building code in funxy 435s + W <- square(1) 435s + f1a <- function(x, y) sqrt(x^2 + y^2) 435s + F1a <- funxy(f1a, W) 435s + Y <- runiflpp(5, simplenet) 435s + b <- F1a(Y) 435s + }) 435s + } 435s > 435s > 435s > #' tests/hypotests.R 435s > #' Hypothesis tests 435s > #' 435s > #' $Revision: 1.10 $ $Date: 2023/07/17 07:30:48 $ 435s > 435s > if(FULLTEST) { 435s + local({ 435s + berman.test(spiders, "x") 435s + berman.test(lppm(spiders ~ x), "y") 435s + 435s + }) 435s + } 435s > # 435s > # tests/imageops.R 435s > # 435s > # $Revision: 1.43 $ $Date: 2023/08/29 01:03:59 $ 435s > # 435s > 435s > 435s > 435s > if(FULLTEST) { 435s + local({ 435s + d <- distmap(cells, dimyx=32) 435s + ## linear networks 435s + ee <- d[simplenet, drop=FALSE] 435s + eev <- d[simplenet] 435s + }) 435s + } 435s > 435s BEGIN TEST testsL.R 435s 435s R version 4.3.2 (2023-10-31) -- "Eye Holes" 435s Copyright (C) 2023 The R Foundation for Statistical Computing 435s Platform: aarch64-unknown-linux-gnu (64-bit) 435s 435s R is free software and comes with ABSOLUTELY NO WARRANTY. 435s You are welcome to redistribute it under certain conditions. 435s Type 'license()' or 'licence()' for distribution details. 435s 435s R is a collaborative project with many contributors. 435s Type 'contributors()' for more information and 435s 'citation()' on how to cite R or R packages in publications. 435s 435s Type 'demo()' for some demos, 'help()' for on-line help, or 435s 'help.start()' for an HTML browser interface to help. 435s Type 'q()' to quit R. 435s 435s > #' 435s > #' Header for all (concatenated) test files 435s > #' 435s > #' Require spatstat.linnet 435s > #' Obtain environment variable controlling tests. 435s > #' 435s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 435s > 435s > require(spatstat.linnet) 435s Loading required package: spatstat.linnet 435s Loading required package: spatstat.data 436s Loading required package: spatstat.geom 436s spatstat.geom 3.2-8 436s Loading required package: spatstat.random 436s spatstat.random 3.2-2 436s Loading required package: spatstat.explore 436s Loading required package: nlme 436s spatstat.explore 3.2-5 436s Loading required package: spatstat.model 436s Loading required package: rpart 436s spatstat.model 3.2-8 436s spatstat.linnet 3.1-3 436s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 436s > ALWAYS <- TRUE 436s > cat(paste("--------- Executing", 436s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 436s + "test code -----------\n")) 436s --------- Executing **RESTRICTED** subset of test code ----------- 436s > # 436s > # tests/lppstuff.R 436s > # 436s > # Tests for lpp code 436s > # 436s > # $Revision: 1.71 $ $Date: 2022/06/27 02:43:58 $ 436s > 436s > 436s > local({ 436s + if(ALWAYS) { 436s + #' make test data 436s + Xsimple <- runiflpp(6, simplenet) 436s + Xchic <- chicago[c(TRUE, FALSE)] 436s + Xspid <- spiders[c(TRUE, FALSE)] 436s + Xdend <- dendrite[seq_len(npoints(dendrite)) %% 8 == 0] 436s + } 436s + 436s + if(FULLTEST) { 436s + #' lpp class support 436s + Xone <- Xsimple %mark% runif(6) 436s + Xtwo <- Xsimple %mark% data.frame(a=1:6, b=runif(6)) 436s + print(summary(Xone)) 436s + print(summary(Xtwo)) 436s + plot(Xsimple, show.window=TRUE) 436s + plot(Xone) 436s + plot(Xtwo, do.several=FALSE) 436s + #' geometry etc 436s + rotate(Xsimple, pi/3, centre=c(0.2,0.3)) 436s + superimpose.lpp(L=simplenet) 436s + W <- Window(Xsimple) 436s + #' cut.lpp 436s + tes <- lineardirichlet(Xsimple[1:4]) 436s + f <- as.linfun(tes) 436s + Z <- as.linim(f) 436s + cut(Xsimple, tes) 436s + cut(Xsimple, f) 436s + cut(Xsimple, Z) 436s + 436s + #' check 'normalise' option in linearKinhom 436s + fit <- lppm(Xsimple ~x) 436s + K <- linearKinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE) 436s + plot(K) 436s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE) 436s + plot(g) 436s + K <- linearKinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE) 436s + plot(K) 436s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE) 436s + plot(g) 436s + ## other code blocks 436s + K <- linearKinhom(Xsimple, lambda=fit, correction="none", ratio=TRUE) 436s + g <- linearpcf(Xsimple, correction="none", ratio=TRUE) 436s + g1 <- linearpcf(Xsimple[1], ratio=TRUE) 436s + K1 <- linearKcross(dendrite[1], "thin", "thin", ratio=TRUE) 436s + ## check empty patterns OK 436s + X0 <- runiflpp(0, simplenet) 436s + print(X0) 436s + g <- linearpcf(X0, ratio=TRUE) 436s + } 436s + 436s + ## nearest neighbour distances 436s + eps <- sqrt(.Machine$double.eps) 436s + f <- function(mat,k) { apply(mat, 1, function(z,n) { sort(z)[n] }, n=k+1) } 436s + g <- function(mat,k) { apply(mat, 1, function(z,n) { order(z)[n] }, n=k+1) } 436s + 436s + if(ALWAYS) { 436s + nn <- nndist(Xspid) 436s + nnP <- f(pairdist(Xspid), 1) 436s + if(any(abs(nn - nnP) > eps)) 436s + stop("nndist.lpp does not agree with pairdist.lpp") 436s + 436s + nw <- nnwhich(Xspid) 436s + nwP <- g(pairdist(Xspid), 1) 436s + if(any(nw != nwP)) 436s + stop("nnwhich.lpp does not agree with pairdist") 436s + } 436s + 436s + if(FULLTEST) { 436s + #' code blocks in nndist.lpp/nnwhich.lpp 436s + #' non-sparse network, interpreted code 436s + Ad <- nndist(Xspid, method="interpreted") 436s + Aw <- nnwhich(Xspid, method="interpreted") 436s + #' sparse network, older C code 436s + opa <- spatstat.options(Cnndistlpp=FALSE) 436s + Bd <- nndist(dendrite) 436s + Bw <- nnwhich(dendrite) 436s + spatstat.options(opa) 436s + #' undefined nearest neighbours 436s + Ed <- nndist(Xspid[1:3], k=1:3) 436s + Ew <- nnwhich(Xspid[1:3], k=1:3) 436s + 436s + #' trivial cases in nncross.lpp 436s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet), 436s + what="which", format="list")$which 436s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet), 436s + what="dist", format="list")$dist 436s + } 436s + 436s + if(ALWAYS) { 436s + #' compare algorithms 436s + ZZ <- split(Xchic) 436s + XX <- ZZ$damage 436s + YY <- ZZ$assault 436s + op <- spatstat.options(Cnncrosslpp=FALSE) 436s + a <- nncross(XX, YY) 436s + spatstat.options(Cnncrosslpp=TRUE) 436s + b <- nncross(XX, YY) 436s + if(any(a$which != b$which)) 436s + stop("Inconsistent values of nncross.lpp()$which from different C code") 436s + if(max(abs(a$dist - b$dist)) > eps) 436s + stop("Inconsistent values of nncross.lpp()$dist from different C code") 436s + 436s + spatstat.options(Cnncrosslpp=TRUE) 436s + b2 <- nncross(XX, YY, k=1:2, what="which") 436s + if(any(b2$which.1 != b$which)) 436s + stop("inconsistent values of nncross.lpp()$which from k=1:2 and k=1") 436s + a2 <- nncross(XX, YY, k=1:2, what="dist") 436s + if(max(abs(a2$dist.1 - a$dist)) > eps) 436s + stop("Inconsistent values of nncross.lpp()$dist from k=1:2 and k=1") 436s + 436s + spatstat.options(Cnncrosslpp=TRUE) 436s + ii <- seq_len(npoints(XX)) 436s + w1 <- nnwhich(XX) 436s + w2 <- nncross(XX, XX, iX=ii, iY=ii, what="which") 436s + w3 <- nncross(XX, XX, iX=ii, iY=ii, what="which", method="interpreted") 436s + if(any(w1 != w2)) 436s + stop("nnwhich.lpp disagrees with nncross.lpp(iX, iY)") 436s + if(any(w2 != w3)) 436s + stop("Different results for nncross.lpp(iX, iY, 'which') using R and C") 436s + d1 <- nndist(XX) 436s + d2 <- nncross(XX, XX, iX=ii, iY=ii, what="dist") 436s + d3 <- nncross(XX, XX, iX=ii, iY=ii, what="dist", method="interpreted") 436s + if(max(abs(d1-d2)) > eps) 436s + stop("nndist.lpp disagrees with nncross.lpp(iX, iY)") 436s + if(max(abs(d2-d3)) > eps) 436s + stop("Different results for nncross.lpp(iX, iY, 'dist') using R and C") 436s + spatstat.options(Cnncrosslpp=FALSE) 436s + w4 <- nncross(XX, XX, iX=ii, iY=ii, what="which") 436s + d4 <- nncross(XX, XX, iX=ii, iY=ii, what="dist") 436s + if(any(w2 != w4)) 436s + stop("Different results for nncross.lpp(iX, iY, 'which') fast and slow C") 436s + if(max(abs(d2-d4)) > eps) 436s + stop("Different results for nncross.lpp(iX, iY, 'dist') fast and slow C") 436s + spatstat.options(Cnncrosslpp=TRUE) 436s + } 436s + 436s + reset.spatstat.options() 436s + 436s + if(FULLTEST) { 436s + ## test handling marginal cases 436s + xyd <- nncross(XX, YY[1]) 436s + A <- runiflpp(5, simplenet) 436s + B <- runiflpp(2, simplenet) 436s + aaa <- nncross(A,B,k=3:5) #' all undefined 436s + aaa <- nncross(A,B,k=1:4) #' some undefined 436s + spatstat.options(Cnncrosslpp=FALSE) 436s + aaa <- nncross(A,B,k=3:5) 436s + aaa <- nncross(A,B,k=1:4) 436s + bbb <- nncross(B,A, iX=1:2, iY=1:5) # another code block 436s + spatstat.options(Cnncrosslpp=TRUE) 436s + reset.spatstat.options() 436s + } 436s + 436s + if(FULLTEST) { 436s + ## as.linnet.psp (Suman's example) 436s + Lines <- as.data.frame(as.psp(simplenet)) 436s + newseg <- c(Lines[1,1:2], Lines[10,3:4]) 436s + Lines <- rbind(Lines, newseg) 436s + Y <- as.psp(Lines, window=Window(simplenet)) 436s + marks(Y) <- c(3, 4, 5, 5, 3, 4, 5, 5,5, 5,1) 436s + Z <- as.linnet(Y) # can crash if marks don't match segments 436s + 436s + ## Test linnet surgery code 436s + RL <- joinVertices(simplenet, matrix(c(2,3), ncol=2)) # redundant edge 436s + RZ <- joinVertices(Z, matrix(c(2,3), ncol=2), marks=6) # redundant edge 436s + JZ <- joinVertices(Z, matrix(c(2,7), ncol=2), marks=6) # new edge 436s + set.seed(42) 436s + X <- runiflpp(30, simplenet) 436s + V <- runiflpp(30, simplenet) 436s + XV <- insertVertices(X, V) 436s + validate.lpp.coords(XV, context="calculated by insertVertices") 436s + X0 <- insertVertices(X, x=numeric(0), y=numeric(0)) 436s + ## vertices on boundary of new window 436s + LL <- simplenet[boundingbox(vertices(simplenet))] 436s + 436s + ## Test [.lpp internal data 436s + B <- owin(c(0.1,0.7),c(0.19,0.6)) 436s + XB <- X[B] 436s + validate.lpp.coords(XB, context="returned by [.lpp") 436s + } 436s + 436s + ## Tests related to linearK, etc 436s + testcountends <- function(X, r=100, s=1) { 436s + if(s != 1) { 436s + X <- rescale(X, s) 436s + r <- r/s 436s + } 436s + L <- as.linnet(X) 436s + n1 <- countends(L, X[1], r) 436s + n2 <- npoints(lineardisc(L, X[1], r, plotit=FALSE)$endpoints) 436s + if(n1 != n2) 436s + stop(paste("Incorrect result from countends:", 436s + n1, "!=", n2, 436s + spatstat.utils::paren(paste("scale=", 1/s))), 436s + call.=FALSE) 436s + } 436s + 436s + if(ALWAYS) { 436s + ## original scale 436s + XU <- unmark(Xchic) 436s + testcountends(XU) 436s + ## finer scale 436s + testcountends(XU, s=1000) 436s + #' disconnected 436s + L <- thinNetwork(simplenet, retainedges = -c(3,8)) 436s + S <- as.psp(L) 436s + x <- midpoints.psp(S)[1] 436s + len <- lengths_psp(S)[1] 436s + A <- lineardisc(L, x, len, plotit=FALSE) #involves many segments of network 436s + B <- lineardisc(L, x, len/5, plotit=FALSE) # involves one segment of network 436s + op <- spatstat.options(Ccountends=FALSE) 436s + A <- lineardisc(L, x, len, plotit=FALSE) 436s + B <- lineardisc(L, x, len/5, plotit=FALSE) 436s + reset.spatstat.options() 436s + 436s + ## Test algorithms for boundingradius.linnet 436s + L <- as.linnet(chicago, sparse=TRUE) 436s + L$boundingradius <- NULL # artificially remove 436s + opa <- spatstat.options(Clinearradius=FALSE) 436s + bR <- as.linnet(L, sparse=FALSE)$boundingradius 436s + spatstat.options(Clinearradius=TRUE) 436s + bC <- as.linnet(L, sparse=FALSE)$boundingradius 436s + spatstat.options(opa) 436s + if(abs(bR-bC) > 0.001 * (bR+bC)/2) 436s + stop("Disagreement between R and C algorithms for boundingradius.linnet", 436s + call.=FALSE) 436s + } 436s + 436s + if(FULLTEST) { 436s + ## linnet things 436s + is.connected(as.linnet(dendrite)) 436s + zik <- rescale(Xchic, 39.37/12, "m") 436s + Simon <- simplenet 436s + unitname(Simon) <- list("metre", "metres", 0.5) 436s + b <- rescale(Simon) 436s + ds <- density(simplenet, 0.05) 436s + } 436s + 436s + if(ALWAYS) { 436s + ## invoke dist2dpath 436s + LS <- as.linnet(simplenet, sparse=TRUE) 436s + LF <- as.linnet(LS, sparse=FALSE) 436s + ## direct call dist2dpath 436s + d <- simplenet$dpath 436s + d[!simplenet$m] <- Inf 436s + diag(d) <- 0 436s + dd <- dist2dpath(d, method="interpreted") 436s + ra <- range(dd - simplenet$dpath) 436s + if(max(abs(ra)) > sqrt(.Machine$double.eps)) 436s + stop("dist2dpath gives different answers in C and R code") 436s + } 436s + 436s + if(FULLTEST) { 436s + ## integral.linim with missing entries 436s + xcoord <- linfun(function(x,y,seg,tp) { x }, domain(Xchic)) 436s + xcoord <- as.linim(xcoord, dimyx=32) 436s + integral(xcoord) 436s + 436s + ## Math.linim 436s + range(xcoord) 436s + stopifnot(is.linim(sqrt(xcoord))) 436s + stopifnot(is.linim(-xcoord)) 436s + stopifnot(is.linim(xcoord + xcoord)) 436s + stopifnot(is.linim(xcoord/3)) 436s + 436s + ## options to plot.linim 436s + plot(xcoord, legend=FALSE) 436s + plot(xcoord, leg.side="top") 436s + plot(xcoord, style="width", leg.side="bottom") 436s + 436s + ## as.linim.linim 436s + xxcc <- as.linim(xcoord) 436s + xxcceps <- as.linim(xcoord, eps=15) 436s + xxccdel <- as.linim(xcoord, delta=30) 436s + df1 <- attr(xxcc, "df") 436s + df2 <- attr(xxccdel, "df") 436s + df3 <- resampleNetworkDataFrame(df1, df2) 436s + 436s + ## linim with complex values 436s + Zc <- as.im(function(x,y){(x-y) + x * 1i}, Frame(simplenet)) 436s + Fc <- linim(simplenet, Zc) 436s + print(Fc) 436s + print(summary(Fc)) 436s + 436s + ## linim with df provided 436s + Z <- as.im(function(x,y) {x-y}, Frame(simplenet)) 436s + X <- linim(simplenet, Z) 436s + df <- attr(X, "df") 436s + XX <- linim(simplenet, Z, df=df) 436s + dfwithout <- df[, colnames(df) != "values"] 436s + XXX <- linim(simplenet, Z, df=dfwithout) 436s + plot(XXX, zlim=c(-1,1)) 436s + plot(XXX, legend=FALSE) 436s + plot(XXX, leg.side="bottom") 436s + 436s + ## lpp with multiple columns of marks 436s + M <- Xchic 436s + marks(M) <- cbind(type=marks(M), data.frame(distnearest=nndist(M))) 436s + plot(M, main="") 436s + summary(M) 436s + MM <- cut(M) 436s + 436s + #' other cases 436s + CC <- cut(Xchic) 436s + nd <- nndist(Xspid) 436s + SX <- cut(Xspid %mark% nd, breaks=3) 436s + SX <- cut(Xspid, nd, breaks=c(0,100,200,Inf), include.lowest=TRUE) 436s + 436s + ## linequad 436s + Y <- Xsimple %mark% factor(rep(c("A", "B"), 3)) 436s + aX <- linequad(Xsimple) 436s + aY <- linequad(Y) 436s + aXR <- linequad(Xsimple, random=TRUE) 436s + aYR <- linequad(Y, random=TRUE) 436s + P <- as.ppp(Xsimple) 436s + S <- as.psp(domain(Xsimple)) 436s + d <- linequad(P, S) 436s + oop <- spatstat.options(Clinequad=FALSE) 436s + bX <- linequad(Xsimple) 436s + spatstat.options(oop) 436s + 436s + ## other internal utilities 436s + df <- pointsAlongNetwork(simplenet, 0.05) 436s + X <- as.ppp(df[,c("x", "y")], W=Frame(simplenet)) 436s + A <- local2lpp(simplenet, seg=df$seg, tp=df$tp, X=X, df.only=FALSE) 436s + 436s + ## mark-mark scatterplot uses pairdist 436s + X <- runiflpp(20, simplenet) %mark% runif(20) 436s + markmarkscatter(X, 0.2) 436s + markmarkscatter(X[FALSE], 0.1) 436s + 436s + ## tree branches 436s + ## make a simple tree 436s + m <- simplenet$m 436s + m[8,10] <- m[10,8] <- FALSE 436s + L <- linnet(vertices(simplenet), m) 436s + tb <- treebranchlabels(L, 1) 436s + X <- runiflpp(30, L) 436s + ## delete branch B 436s + XminusB <- deletebranch(X, "b", tb) 436s + ## extract branch B 436s + XB <- extractbranch(X, "b", tb) 436s + 436s + ## cases of lintess() 436s + A <- lintess(simplenet) # argument df missing 436s + S <- as.psp(simplenet) 436s + ns <- nsegments(S) 436s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns]) 436s + M <- data.frame(len=lengths_psp(S), ang=angles.psp(S)) 436s + V <- lintess(simplenet, df, marks=M) 436s + 436s + ## methods for class lintess 436s + U <- unmark(V) 436s + U <- unstack(V) 436s + print(summary(V)) 436s + W <- Window(V) 436s + plot(V, style="image") 436s + plot(V, style="width") 436s + 436s + ## linear tessellations infrastructure 436s + nX <- 100 436s + nY <- 20 436s + X <- runiflpp(nX, simplenet) 436s + Y <- runiflpp(nY, simplenet) 436s + tes <- divide.linnet(Y) 436s + cX <- coords(X) 436s + iI <- lineartileindex(cX$seg, cX$tp, tes, method="interpreted") 436s + iC <- lineartileindex(cX$seg, cX$tp, tes, method="C") 436s + iE <- lineartileindex(cX$seg, cX$tp, tes, method="encode") 436s + if(!identical(iI,iC)) 436s + stop("conflicting results from lineartileindex (interpreted vs C)") 436s + if(!identical(iI,iE)) 437s + stop("conflicting results from lineartileindex (interpreted vs encoded)") 437s + iA <- as.linfun(tes)(X) 437s + if(!identical(iI, iA)) 437s + stop("disagreement between as.linfun.lintess and lineartileindex") 437s + 437s + ## intersection of lintess 437s + X <- divide.linnet(runiflpp(4, simplenet)) 437s + Y <- divide.linnet(runiflpp(3, simplenet)) 437s + nX <- summary(X)$nt 437s + nY <- summary(Y)$nt 437s + marks(X) <- factor(letters[1L + (seq_len(nX) %% 2)]) 437s + marks(Y) <- runif(nY) 437s + Zmm <- intersect.lintess(X,Y) 437s + Zum <- intersect.lintess(unmark(X),Y) 437s + Zmu <- intersect.lintess(X,unmark(Y)) 437s + } 437s + 437s + if(FULLTEST) { 437s + #' handling by 'solist', 'unstack', 'plot.solist' etc 437s + L <- simplenet 437s + X <- runiflpp(5, L) %mark% cbind(a=1:5, b=letters[1:5]) 437s + ns <- nsegments(L) 437s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns]) 437s + S <- lintess(L, df) 437s + f <- as.linfun(S) 437s + g <- as.linfun(S, values=seq_len(nsegments(L))) 437s + V <- as.linim(f) 437s + Z <- as.linim(g) 437s + shebang <- solist(L=L, X=X, S=S, f=f, g=g, V=V, Z=Z) 437s + plot(shebang) 437s + plot(shebang, valuesAreColours=FALSE) 437s + kapow <- unstack(shebang) 437s + plot(kapow) 437s + } 437s + 437s + #' kernel density estimation 437s + X <- Xsimple[1:5] 437s + w <- runif(npoints(X)) 437s + if(ALWAYS) { 437s + #' density.lpp -> densityHeat, includes platform-dependent code 437s + D <- density(X, 0.05) 437s + D <- density(X, 0.05, weights=w) 437s + } 437s + if(FULLTEST) { 437s + #' code blocks 437s + D <- density(X[FALSE], 0.05) 437s + D <- density(X, Inf) 437s + D <- density(X, 0.05, finespacing=TRUE) # } 437s + D <- density(X, 0.05, eps=0.008) # } code blocks in resolve.heat.steps 437s + D <- density(X, 0.05, dimyx=256) # } 437s + } 437s + if(ALWAYS) { 437s + DX <- density(X, 0.05, at="points", fastmethod="a", debug=TRUE) 437s + DX <- density(X, 0.05, at="points", fast=FALSE, debug=TRUE) 437s + ## densityfun.lpp, code blocks 437s + ff <- densityfun(X, 0.05, nsigma=Inf) 437s + } 437s + if(FULLTEST) { 437s + #' disconnected network 437s + L <- thinNetwork(simplenet, retainedges=-c(3,5)) 437s + Y <- runiflpp(5, L) 437s + D <- density(Y, 0.05) 437s + D <- density(Y, 0.05, weights=w) 437s + D <- density(Y, Inf) 437s + g <- flatdensityfunlpp(Y, disconnect=FALSE) 437s + a <- flatdensityatpointslpp(Y, disconnect=FALSE) 437s + #' density.lpp -> densityEqualSplit 437s + D <- density(X, 0.05, kernel="e", weights=w) 437s + D <- density(X, Inf, kernel="e") 437s + D <- density(Y, 0.05, kernel="e", weights=w) 437s + D <- density(Y, Inf, kernel="e") 437s + } 437s + if(ALWAYS) { 437s + #' density.lpp -> densityQuick.lpp 437s + D <- density(X, 0.05, distance="e", weights=runif(5)) 437s + } 437s + if(FULLTEST) { 437s + D <- density(X, Inf, distance="e") 437s + D <- density(Y, 0.05, distance="e", weights=runif(5)) 437s + D <- density(Y, Inf, distance="e") 437s + ## example from Andrea Gilardi 437s + ## with duplicated points, and points at a vertex 437s + A <- runiflpp(5, simplenet) 437s + V <- lpp(vertices(simplenet)[2:4], simplenet) 437s + B <- superimpose(A, A[3], V) 437s + D <- density(B, sigma=0.2, distance="e", at="points") 437s + if(length(as.numeric(D)) != npoints(B)) 437s + stop("density.lpp(at='points') returns wrong number of values") 437s + G <- superimpose(U=runiflpp(4, simplenet), B=B) 437s + b <- bw.relrisklpp(G, distance="e", nh=2) 437s + } 437s + if(FULLTEST) { 437s + #' densityVoronoi.lpp and related code 437s + densityVoronoi(X, f=0) 437s + densityVoronoi(X, f=1e-8) 437s + densityVoronoi(X, f=1) 437s + densityVoronoi(X[FALSE], f=0.5) 437s + XX <- X[rep(1:npoints(X), 4)] 437s + densityVoronoi(XX, f=0.99999, nrep=5) 437s + densityVoronoi(Y, f=0) 437s + densityVoronoi(Y, f=1e-8) 437s + densityVoronoi(Y, f=1) 437s + densityVoronoi(Y[FALSE], f=0.5) 437s + #' bandwidth selection 437s + bw.voronoi(X, nrep=4, prob=c(0.2, 0.4, 0.6)) 437s + bw.lppl(X) 437s + sug <- seq(0.1, 0.3, by=0.05) 437s + bw.lppl(X, sigma=sug) 437s + bw.lppl(X, sigma=sug, shortcut=FALSE) 437s + bw.lppl(X, sigma=sug, distance="path", shortcut=FALSE) 437s + } 437s + if(ALWAYS) { 437s + #' inhomogeneous K and g 437s + SD <- split(Xdend) 437s + DT <- density(SD[["thin"]], 100, distance="euclidean") 437s + DS <- density(SD[["stubby"]], 100, distance="euclidean") 437s + Kii <- linearKcross.inhom(dendrite, "thin", "thin", DT, DT) 437s + Kij <- linearKcross.inhom(dendrite, "thin", "stubby", DT, DS, 437s + correction="none", ratio=TRUE) 437s + gii <- linearpcfcross.inhom(dendrite, "thin", "thin", DT, DT) 437s + gij <- linearpcfcross.inhom(dendrite, "thin", "stubby", DT, DS, 437s + correction="none", ratio=TRUE) 437s + } 437s + if(FULLTEST) { 437s + Kx <- linearKcross.inhom(dendrite[1], "thin", "stubby", DT, DS) 437s + gx <- linearpcfcross.inhom(dendrite[1], "thin", "stubby", DT, DS) 437s + } 437s + 437s + if(FULLTEST) { 437s + ## infrastructure for density.lpp 437s + L <- domain(Xchic) 437s + A <- resolve.heat.steps(100, L=L, dx=1) 437s + B <- resolve.heat.steps(100, L=L, dt=0.2) 437s + C <- resolve.heat.steps(100, L=L, niter=1e5) 437s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=3) 437s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=Inf) 437s + D <- resolve.heat.steps(100, L=L, dx=1, dt=0.2) 437s + E <- resolve.heat.steps(500, L=L, dt=0.5, iterMax=2e5) 437s + A <- resolve.heat.steps(1, L=simplenet, dt=2, dx=0.05) 437s + B <- resolve.heat.steps(1, L=simplenet) 437s + C <- resolve.heat.steps(1, L=simplenet, finespacing=FALSE) 437s + D <- resolve.heat.steps(1, seglengths=rep(0.7, 5), maxdegree=4, AMbound=7) 437s + ## vertices on boundary 437s + L <- simplenet 437s + L <- L[boundingbox(vertices(L))] 437s + X <- as.lpp(0.41259, 0.6024, L=L) 437s + D <- density(X, 0.1) 437s + } 437s + 437s + if(FULLTEST) { 437s + #' multitype 437s + #' density.splitppx 437s + Z <- split(Xchic)[1:3] 437s + D <- density(Z, 7) 437s + #' relrisk.lpp for 3 types 437s + U <- do.call(superimpose, Z) 437s + A <- relrisk(U, 20, control=1, relative=TRUE) 437s + A <- relrisk(U, 20, control=1, relative=TRUE, at="points") 437s + #' relrisk.lpp for 2 types 437s + V <- do.call(superimpose, Z[1:2]) 437s + A <- relrisk(V, 20, control=2, casecontrol=FALSE) # issues warning 437s + B <- relrisk(V, 20, control="assault", case=2, relative=TRUE) 437s + D <- relrisk(V, 20, control=1, case="burglary", relative=TRUE, at="points") 437s + #' bw.relrisklpp 437s + b1 <- bw.relrisklpp(V, hmax=3, fudge=0.01, 437s + method="leastsquares", reference="sigma") 437s + b2 <- bw.relrisklpp(V, hmax=3, fudge=0.01, 437s + method="KelsallDiggle", reference="uniform") 437s + } 437s + 437s + if(FULLTEST) { 437s + #' pairs.linim 437s + Z <- density(Xsimple, 0.5, distance="euclidean") 437s + pairs(solist(Z)) 437s + pairs(solist(A=Z)) 437s + U <- density(as.ppp(Xsimple), 0.5) 437s + pairs(solist(U, Z)) 437s + pairs(solist(Z, U)) 437s + } 437s + 437s + if(FULLTEST) { 437s + #' complex-valued functions and images 437s + f <- function(x,y,seg,tp) { x + y * 1i } 437s + g <- linfun(f, simplenet) 437s + h <- as.linim(g) 437s + plot(Re(h)) 437s + plot(h) 437s + plot(g) 437s + integral(h) 437s + integral(g) 437s + } 437s + 437s + ## 'lixellate' - involves C code 437s + if(ALWAYS) { 437s + ## Cases where no subdivision occurs 437s + P <- runiflpp(4, simplenet) 437s + A <- lixellate(P, nsplit=1) 437s + B <- lixellate(P, eps=2) 437s + ## bug in 'lixellate' (Jakob Gulddahl Rasmussen) 437s + X <- ppp(c(0,1), c(0,0), owin()) 437s + L <- linnet(X, edges = matrix(1:2, ncol=2)) 437s + Y <- lpp(X, L) 437s + ## The left end point is OK 437s + lixellate(Y[1], nsplit=30) 437s + d <- density(Y[1], .1) 437s + ## The right end point gave an error 437s + lixellate(Y[2], nsplit=30) 437s + d <- density(Y[2], .1) 437s + } 437s + 437s + if(FULLTEST) { 437s + ## make some bad data and repair it 437s + L <- simplenet 437s + ## reverse edges 437s + a <- L$from[c(FALSE,TRUE)] 437s + L$from[c(FALSE,TRUE)] <- L$to[c(FALSE,TRUE)] 437s + L$to[c(FALSE,TRUE)] <- a 437s + ## duplicate edges 437s + ns <- nsegments(L) 437s + ii <- c(seq_len(ns), 2) 437s + L$from <- L$from[ii] 437s + L$to <- L$to[ii] 437s + L$lines <- L$lines[ii] 437s + ## 437s + Y <- repairNetwork(L) 437s + ## add points 437s + X <- runiflpp(4, L) 437s + Z <- repairNetwork(X) 437s + } 437s + 437s + if(FULLTEST) { 437s + #' random generation bugs and code blocks 437s + A <- runiflpp(5, simplenet, nsim=2) 437s + D <- density(A[[1]], 0.3) 437s + B <- rpoislpp(D, nsim=2) 437s + stopifnot(is.multitype(rlpp(c(10,5), list(a=D,b=D)))) 437s + stopifnot(is.multitype(rlpp(5, list(a=D,b=D)))) 437s + stopifnot(is.multitype(rlpp(c(10,5), D))) 437s + } 437s + 437s + ## rhohat.lppm 437s + if(FULLTEST) { 437s + fut <- lppm(Xspid ~ 1) 437s + rx <- rhohat(fut, "x") 437s + Z <- linfun(function(x,y,seg,tp) { x }, domain(Xspid)) 437s + rZ <- rhohat(fut, Z) 437s + U <- predict(rx) 437s + U <- predict(rZ) 437s + Y <- simulate(rx) 437s + Y <- simulate(rZ) 437s + futm <- lppm(Xchic ~ x + marks) 437s + ry <- rhohat(futm, "y") 437s + U <- predict(ry) 437s + Y <- simulate(ry) 437s + } 437s + 437s + if(ALWAYS) { 437s + #' new code for pairdist.lpp 437s + X <- runiflpp(10, simplenet) 437s + dC <- pairdist(X, method="C") 437s + dI <- pairdist(X, method="interpreted") 437s + if(max(abs(dC - dI)) > 0.01) 437s + stop("pairdist.lpp: disagreement between C and R") 437s + XS <- as.lpp(X, sparse=TRUE) 437s + dS <- pairdist(XS) 437s + if(max(abs(dC - dS)) > 0.01) 437s + stop("pairdist.lpp: disagreement between sparse and non-sparse C") 437s + dU <- pairdist(XS, method="testsymm") # secret option 437s + if(max(abs(dS - dU)) > 0.01) 437s + stop("pairdist.lpp: disagreement between symmetric and asymmetric") 437s + 437s + #' new code for crossdist.lpp 437s + #' non-sparse 437s + v <- split(Xchic) 437s + X <- v$cartheft 437s + Y <- v$burglary 437s + dC <- crossdist(X, Y, method="C") 437s + dI <- crossdist(X, Y, method="interpreted") 437s + if(max(abs(dC - dI)) > 0.01) 437s + stop("crossdist.lpp (non-sparse): disagreement between C and R") 437s + #' convert to sparse 437s + Chuck <- as.lpp(Xchic, sparse=TRUE) 437s + V <- split(Chuck) 437s + X <- V$cartheft 437s + Y <- V$burglary 437s + dS <- crossdist(X, Y) 437s + if(max(abs(dS - dC)) > 0.01) 437s + stop("crossdist.lpp: disagreement between sparse and non-sparse") 437s + #' disconnected 437s + L <- thinNetwork(simplenet, retainedges = -c(3,8)) 437s + X <- runiflpp(20, L) 437s + Y <- runiflpp(15, L) 437s + d <- crossdist(X,Y) 437s + 437s + ## example where the path is very long (covers a previous bug) 437s + X <- dendrite[c(349,563)] 437s + a <- pairdist(X, method="testsymm") 437s + if(max(abs(a-t(a))) > 0.01) 437s + stop("pairdist.lpp: asymmetry for long distances") 437s + b <- pairdist(as.lpp(X, sparse=FALSE)) 437s + if(max(abs(a-b)) > 0.01) 437s + stop("pairdist.lpp: disagreement sparse vs non-sparse for long distance") 437s + } 437s + }) 437s sigma = 0.05 437s Network: 437s total length = 2.90485162043096 437s number of edges = 10 437s average nonzero edge length = 0.290485162043096 437s shortest nonzero edge length = 0.150146561419501 437s Determine dx by default rule 437s Mean Nonzero Edge Length/ 30 = 0.00968283873476987 437s Total Network Length/ 100 = 0.0290485162043096 437s Min Nonzero Edge Length/3 = 0.0500488538065003 437s Minimum of the above = 0.00968283873476987 437s Fine spacing rule: dx = 0.00968283873476987 437s Rounded total number of lixels = 300 437s Adjusted dx = 0.00968283873476987 437s Applying full set of constraints 437s dt (determined by all constraints) = 1.27242139521974e-05 437s Number of iterations (determined from dt) = 98 437s Updated dt = 1.27551020408163e-05 437s alpha = 0.136043732774807 437s Final values: 437s Time step dt = 1.27551020408163e-05 437s Sample spacing dx = 0.00968283873476987 437s Number of iterations niter = 98 437s Number of states saved nsave = 1 437s Subdividing network ...Done. 437s New network: 437s Linear network with 299 vertices and 299 lines 437s Vertices are marked 437s Enclosing window: rectangle = [0, 1] x [0, 1] units 437s Constructing update matrix A ..Done. 437s alpha = 0.136043732774807 438s Building initial state ..Done. 438s Running iterative solver ..Done. 438s Mapping results to spatial location ..Done. 438s sigma = 0.05 438s Network: 438s total length = 2.90485162043096 438s number of edges = 10 438s average nonzero edge length = 0.290485162043096 438s shortest nonzero edge length = 0.150146561419501 438s Determine dx by default rule 438s Mean Nonzero Edge Length/ 30 = 0.00968283873476987 438s Total Network Length/ 100 = 0.0290485162043096 438s Min Nonzero Edge Length/3 = 0.0500488538065003 438s Minimum of the above = 0.00968283873476987 438s Fine spacing rule: dx = 0.00968283873476987 438s Rounded total number of lixels = 300 438s Adjusted dx = 0.00968283873476987 438s Applying full set of constraints 438s dt (determined by all constraints) = 1.27242139521974e-05 438s Number of iterations (determined from dt) = 98 438s Updated dt = 1.27551020408163e-05 438s alpha = 0.136043732774807 438s Final values: 438s Time step dt = 1.27551020408163e-05 438s Sample spacing dx = 0.00968283873476987 438s Number of iterations niter = 98 438s Number of states saved nsave = 1 438s Subdividing network ...Done. 438s New network: 438s Linear network with 299 vertices and 299 lines 438s Vertices are marked 438s Enclosing window: rectangle = [0, 1] x [0, 1] units 438s Constructing update matrix A ..Done. 438s alpha = 0.136043732774807 438s Building initial state ..Done. 438s finenet: 438s Linear network with 299 vertices and 299 lines 438s Vertices are marked 438s Enclosing window: rectangle = [0, 1] x [0, 1] units 438s lixelmap: 438s int [1:10] 3 51 223 224 239 240 69 70 105 106 438s lixelweight: 438s num [1:10] 38.1 65.2 58.1 45.2 36.6 ... 438s Processing 5 points ... 1, 2, 3, 4, 438s 5. 440s > 440s > reset.spatstat.options() 440s > 440s > #' 440s > #' lppmodels.R 440s > #' 440s > #' Tests of lppm and class support 440s > #' 440s > #' $Revision: 1.2 $ $Date: 2020/06/12 00:24:09 $ 440s > #' 440s > 440s > 440s > local({ 440s + if(ALWAYS) { 440s + fit0 <- lppm(spiders) 440s + fit1 <- lppm(spiders ~ x) 440s + summary(fit0) 440s + summary(fit1) 440s + pseudoR2(fit0) 440s + pseudoR2(fit1) 440s + } 440s + if(FULLTEST) { 440s + fit2 <- lppm(chicago ~ x+y) 440s + summary(fit2) 440s + pseudoR2(fit2) 440s + } 440s + if(ALWAYS) { 440s + X <- runiflpp(10, simplenet) 440s + Z <- distfun(runiflpp(10, simplenet)) 440s + fit3 <- lppm(X ~ Z) 440s + summary(fit3) 440s + pseudoR2(fit3) 440s + } 440s + 440s + Window(fit1) 440s + 440s + if(ALWAYS) a <- model.images(fit0) 440s + if(FULLTEST) { 440s + a <- model.images(fit1) 440s + a <- model.images(fit2) 440s + a <- model.images(fit3) 440s + } 440s + if(ALWAYS) 440s + b <- model.matrix(fit0) 440s + if(FULLTEST) { 440s + b <- model.matrix(fit1) 440s + b <- model.matrix(fit2) 440s + b <- model.matrix(fit3) 440s + } 440s + 440s + if(ALWAYS) 440s + is.multitype(fit0) 440s + if(FULLTEST) { 440s + is.multitype(fit1) 440s + is.multitype(fit2) 440s + is.multitype(fit3) 440s + } 440s + 440s + if(ALWAYS) fit0e <- emend(fit0) 440s + if(FULLTEST) { 440s + fit1e <- emend(fit1) 440s + fit2e <- emend(fit2) 440s + fit3e <- emend(fit3) 440s + } 440s + 440s + #' fundamental utilities: 440s + #' spatialCovariateEvidence (was: evalCovar) 440s + ycoord <- function(x,y) { y } 440s + if(ALWAYS) YS <- as.linim(ycoord, L=domain(spiders)) 440s + if(FULLTEST) YC <- as.linim(ycoord, L=domain(chicago)) 440s + 440s + if(ALWAYS) aT <- spatialCovariateEvidence(fit1, YS, interpolate=TRUE) 440s + if(FULLTEST) { 440s + aF <- spatialCovariateEvidence(fit1, YS, interpolate=FALSE) 440s + dT <- spatialCovariateEvidence(fit1, ycoord, interpolate=TRUE) 440s + dF <- spatialCovariateEvidence(fit1, ycoord, interpolate=FALSE) 440s + bT <- spatialCovariateEvidence(fit2, YC, interpolate=TRUE) 440s + bF <- spatialCovariateEvidence(fit2, YC, interpolate=FALSE) 440s + cT <- spatialCovariateEvidence(fit2, ycoord, interpolate=TRUE) 440s + cF <- spatialCovariateEvidence(fit2, ycoord, interpolate=FALSE) 440s + } 440s + 440s + }) 440s Point process model on linear network 440s Fitted to point pattern dataset ‘spiders’ 440s Internal fit: Point process model 440s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE) 440s Fitting method: maximum likelihood (Berman-Turner approximation) 440s Model was fitted using glm() 440s Algorithm converged 440s Call: 440s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE), 440s method = "mpl", forcefit = TRUE) 440s Edge correction: “border” 440s [border correction distance r = 0 ] 440s -------------------------------------------------------------------------------- 440s Quadrature scheme (Berman-Turner) = data + dummy + weights 440s 440s Data pattern: 440s Planar point pattern: 48 points 440s Average intensity 3.79e-05 points per square mm 440s Window: rectangle = [0, 1125] x [0, 1125] mm 440s Window area = 1265620 square mm 440s Unit of length: 1 mm 440s 440s Dummy quadrature points: 440s Equally spaced along each segment at spacing eps = 20.22 mm 440s Original parameter nd = 1000 440s 440s Planar point pattern: 1198 points 440s Average intensity 0.000947 points per square mm 440s Window: rectangle = [0, 1125] x [0, 1125] mm 440s Window area = 1265620 square mm 440s Unit of length: 1 mm 440s Quadrature weights: 440s Counting weights based on segment length 440s All weights: 440s range: [3.12, 20.2] total: 20200 440s Weights on data points: 440s range: [4.78, 10.1] total: 466 440s Weights on dummy points: 440s range: [3.12, 20.2] total: 19800 440s -------------------------------------------------------------------------------- 440s FITTED : 440s 440s Stationary Poisson process 440s 440s ---- Intensity: ---- 440s 440s 440s Uniform intensity: 440s [1] 0.002374034 440s 440s Estimate S.E. CI95.lo CI95.hi Ztest Zval 440s (Intercept) -6.043165 0.1443376 -6.326061 -5.760268 *** -41.86827 440s 440s ----------- gory details ----- 440s 440s Fitted regular parameters (theta): 440s (Intercept) 440s -6.043165 440s 440s Fitted exp(theta): 440s (Intercept) 440s 0.002374034 440s 440s Original data: spiders 440s Domain: Linear network with 156 vertices and 203 lines 440s Total length 20218.75 mm 440s Maximum vertex degree: 3 440s [Non-sparse matrix representation] 440s Network is connected 440s Diameter: 2575 mm 440s Bounding radius: 1306.25 mm 440s Numerical tolerance: 0.00625 mm 440s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm 440s Point process model on linear network 440s Fitted to point pattern dataset ‘spiders’ 440s Internal fit: Point process model 440s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE) 440s Fitting method: maximum likelihood (Berman-Turner approximation) 440s Model was fitted using glm() 440s Algorithm converged 440s Call: 440s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE), 440s trend = ~x, interaction = NULL, data = NULL, method = "mpl", 440s forcefit = TRUE) 440s Edge correction: “border” 440s [border correction distance r = 0 ] 440s -------------------------------------------------------------------------------- 440s Quadrature scheme (Berman-Turner) = data + dummy + weights 440s 440s Data pattern: 440s Planar point pattern: 48 points 440s Average intensity 3.79e-05 points per square mm 440s Window: rectangle = [0, 1125] x [0, 1125] mm 440s Window area = 1265620 square mm 440s Unit of length: 1 mm 440s 440s Dummy quadrature points: 440s Equally spaced along each segment at spacing eps = 20.22 mm 440s Original parameter nd = 1000 440s 440s Planar point pattern: 1198 points 440s Average intensity 0.000947 points per square mm 440s Window: rectangle = [0, 1125] x [0, 1125] mm 440s Window area = 1265620 square mm 440s Unit of length: 1 mm 440s Quadrature weights: 440s Counting weights based on segment length 440s All weights: 440s range: [3.12, 20.2] total: 20200 440s Weights on data points: 440s range: [4.78, 10.1] total: 466 440s Weights on dummy points: 440s range: [3.12, 20.2] total: 19800 440s -------------------------------------------------------------------------------- 440s FITTED : 440s 440s Nonstationary Poisson process 440s 440s ---- Intensity: ---- 440s 440s Log intensity: ~x 440s 440s Fitted trend coefficients: 440s (Intercept) x 440s -6.4845961867 0.0007423366 440s 440s Estimate S.E. CI95.lo CI95.hi Ztest 440s (Intercept) -6.4845961867 0.3179208001 -7.1077095048 -5.861482869 *** 440s x 0.0007423366 0.0004467129 -0.0001332047 0.001617878 440s Zval 440s (Intercept) -20.396892 440s x 1.661775 440s 440s ----------- gory details ----- 440s 440s Fitted regular parameters (theta): 440s (Intercept) x 440s -6.4845961867 0.0007423366 440s 440s Fitted exp(theta): 440s (Intercept) x 440s 0.001526777 1.000742612 440s 440s Original data: spiders 440s Domain: Linear network with 156 vertices and 203 lines 440s Total length 20218.75 mm 440s Maximum vertex degree: 3 440s [Non-sparse matrix representation] 440s Network is connected 440s Diameter: 2575 mm 440s Bounding radius: 1306.25 mm 440s Numerical tolerance: 0.00625 mm 440s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm 440s Point process model on linear network 440s Fitted to point pattern dataset ‘X’ 440s Internal fit: Point process model 440s Fitted to data: linequad(X, eps = NULL, nd = 1000, random = FALSE) 440s Fitting method: maximum likelihood (Berman-Turner approximation) 440s Model was fitted using glm() 440s Algorithm converged 440s Call: 440s ppm.quad(Q = linequad(X, eps = NULL, nd = 1000, random = FALSE), 440s trend = ~Z, interaction = NULL, data = NULL, method = "mpl", 440s forcefit = TRUE) 440s Edge correction: “border” 440s [border correction distance r = 0 ] 440s -------------------------------------------------------------------------------- 440s Quadrature scheme (Berman-Turner) = data + dummy + weights 440s 440s Data pattern: 440s Planar point pattern: 10 points 440s Average intensity 10 points per square unit 440s Window: rectangle = [0, 1] x [0, 1] units 440s Window area = 1 square unit 440s 440s Dummy quadrature points: 440s Equally spaced along each segment at spacing eps = 0.002905 units 440s Original parameter nd = 1000 440s 440s Planar point pattern: 1010 points 440s Average intensity 1010 points per square unit 440s Window: rectangle = [0, 1] x [0, 1] units 440s Window area = 1 square unit 440s Quadrature weights: 440s Counting weights based on segment length 440s All weights: 440s range: [0.000763, 0.0029] total: 2.9 440s Weights on data points: 440s range: [0.00145, 0.00145] total: 0.0145 440s Weights on dummy points: 440s range: [0.000763, 0.0029] total: 2.89 440s -------------------------------------------------------------------------------- 440s FITTED : 440s 440s Nonstationary Poisson process 440s 440s ---- Intensity: ---- 440s 440s Log intensity: ~Z 440s Model depends on external covariate ‘Z’ 440s Covariates provided: 440s Z: function(...) 440s 440s Fitted trend coefficients: 440s (Intercept) Z 440s 1.2684385 -0.2857146 440s 440s Estimate S.E. CI95.lo CI95.hi Ztest Zval 440s (Intercept) 1.2684385 0.5376214 0.2147198 2.322157 * 2.35935251 440s Z -0.2857146 3.8863588 -7.9028378 7.331409 -0.07351729 440s 440s ----------- gory details ----- 440s 440s Fitted regular parameters (theta): 440s (Intercept) Z 440s 1.2684385 -0.2857146 440s 440s Fitted exp(theta): 440s (Intercept) Z 440s 3.5552965 0.7514771 440s 440s Original data: X 440s Domain: Linear network with 10 vertices and 10 lines 440s Total length 2.904852 units 440s Maximum vertex degree: 4 440s [Non-sparse matrix representation] 440s Network is connected 440s Diameter: 1.248943 units 440s Bounding radius: 0.7793609 units 440s Numerical tolerance: 0.0001501466 units 440s Enclosing window: rectangle = [0, 1] x [0, 1] units 440s > 440s > 440s BEGIN TEST testsMtoZ.R 440s 440s R version 4.3.2 (2023-10-31) -- "Eye Holes" 440s Copyright (C) 2023 The R Foundation for Statistical Computing 440s Platform: aarch64-unknown-linux-gnu (64-bit) 440s 440s R is free software and comes with ABSOLUTELY NO WARRANTY. 440s You are welcome to redistribute it under certain conditions. 440s Type 'license()' or 'licence()' for distribution details. 440s 440s R is a collaborative project with many contributors. 440s Type 'contributors()' for more information and 440s 'citation()' on how to cite R or R packages in publications. 440s 440s Type 'demo()' for some demos, 'help()' for on-line help, or 440s 'help.start()' for an HTML browser interface to help. 440s Type 'q()' to quit R. 440s 440s > #' 440s > #' Header for all (concatenated) test files 440s > #' 440s > #' Require spatstat.linnet 440s > #' Obtain environment variable controlling tests. 440s > #' 440s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 440s > 440s > require(spatstat.linnet) 440s Loading required package: spatstat.linnet 440s Loading required package: spatstat.data 441s Loading required package: spatstat.geom 441s spatstat.geom 3.2-8 441s Loading required package: spatstat.random 441s spatstat.random 3.2-2 441s Loading required package: spatstat.explore 441s Loading required package: nlme 441s spatstat.explore 3.2-5 441s Loading required package: spatstat.model 441s Loading required package: rpart 441s spatstat.model 3.2-8 441s spatstat.linnet 3.1-3 441s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 441s > ALWAYS <- TRUE 441s > cat(paste("--------- Executing", 441s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 441s + "test code -----------\n")) 441s --------- Executing **RESTRICTED** subset of test code ----------- 441s > ## 441s > ## tests/segments.R 441s > ## Tests of psp class and related code 441s > ## [SEE ALSO: tests/xysegment.R] 441s > ## 441s > ## $Revision: 1.33 $ $Date: 2022/05/22 08:39:47 $ 441s > 441s > 441s > 441s > 441s > if(FULLTEST) { 441s + local({ 441s + ## more tests of lppm code 441s + fit <- lppm(unmark(chicago) ~ polynom(x,y,2)) 441s + Z <- predict(fit) 441s + }) 441s + } 441s > 441s > # 441s > # tests/undoc.R 441s > # 441s > # $Revision: 1.16 $ $Date: 2020/11/02 07:06:49 $ 441s > # 441s > # Test undocumented hacks, experimental code, etc 441s > 441s > 441s > if(FULLTEST) { 441s + local({ 441s + ## linim helper functions 441s + df <- pointsAlongNetwork(simplenet, 0.2) 441s + }) 441s + } 441s > 441s > ## 441s > ## tests/updateppm.R 441s > ## 441s > ## Check validity of update.ppm 441s > ## 441s > ## $Revision: 1.8 $ $Date: 2022/10/23 01:19:19 $ 441s > 441s > local({ 441s + 441s + if(ALWAYS) { 441s + ## test update.lppm 441s + X <- runiflpp(20, simplenet) 441s + fit0 <- lppm(X ~ 1) 441s + fit1 <- update(fit0, ~ x) 441s + anova(fit0, fit1, test="LR") 441s + cat("update.lppm(fit, ~trend) is OK\n") 441s + fit2 <- update(fit0, . ~ x) 441s + anova(fit0, fit2, test="LR") 441s + cat("update.lppm(fit, . ~ trend) is OK\n") 441s + } 441s + }) 442s update.lppm(fit, ~trend) is OK 442s update.lppm(fit, . ~ trend) is OK 442s > ## 442s > ## tests/xysegment.R 442s > ## [SEE ALSO tests/segments.R] 442s > ## 442s > ## Test weird problems and boundary cases for line segment code 442s > ## 442s > ## $Version$ $Date: 2022/10/23 01:21:09 $ 442s > ## 442s > 442s > 442s > if(FULLTEST) local({ S <- as.psp(simplenet) }) 442s > 442s > 442s autopkgtest [20:23:01]: test run-unit-test: -----------------------] 443s run-unit-test PASS 443s autopkgtest [20:23:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 443s autopkgtest [20:23:02]: test pkg-r-autopkgtest: preparing testbed 562s autopkgtest [20:25:01]: testbed dpkg architecture: arm64 563s autopkgtest [20:25:02]: testbed apt version: 2.7.12 563s autopkgtest [20:25:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 563s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 564s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 564s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3704 kB] 564s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 564s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 564s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 564s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 564s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 564s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 564s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4012 kB] 564s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 564s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 564s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 566s Fetched 9112 kB in 2s (5401 kB/s) 566s Reading package lists... 569s Reading package lists... 570s Building dependency tree... 570s Reading state information... 570s Calculating upgrade... 570s The following packages will be REMOVED: 570s libglib2.0-0 libssl3 570s The following NEW packages will be installed: 570s libglib2.0-0t64 libssl3t64 xdg-user-dirs 570s The following packages have been kept back: 570s curl 570s The following packages will be upgraded: 570s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 570s ubuntu-minimal ubuntu-standard 571s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 571s Need to get 4613 kB of archives. 571s After this operation, 211 kB of additional disk space will be used. 571s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 571s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 571s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 571s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 571s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 571s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 571s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 571s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 571s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 571s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 572s Fetched 4613 kB in 1s (6214 kB/s) 572s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 572s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 572s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 572s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 572s udisks2 depends on libglib2.0-0 (>= 2.77.0). 572s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 572s python3-gi depends on libglib2.0-0 (>= 2.77.0). 572s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 572s netplan.io depends on libglib2.0-0 (>= 2.70.0). 572s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 572s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 572s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 572s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 572s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 572s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 572s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 572s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 572s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 572s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 572s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 572s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 572s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 572s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 572s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 572s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 572s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 572s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 572s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 572s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 572s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 572s fwupd depends on libglib2.0-0 (>= 2.79.0). 572s bolt depends on libglib2.0-0 (>= 2.56.0). 572s 572s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 580s Removing cloud-init (24.1.1-0ubuntu1) ... 581s Removing python3-configobj (5.0.8-3) ... 581s Removing python3-debconf (1.5.86) ... 581s Processing triggers for man-db (2.12.0-3) ... 581s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 581s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 582s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 582s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 582s invoke-rc.d: policy-rc.d denied execution of try-restart. 582s Reading package lists... 582s Building dependency tree... 582s Reading state information... 583s linux-generic is already the newest version (6.8.0-11.11+1). 583s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 583s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 584s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 584s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 586s Reading package lists... 586s Reading package lists... 586s Building dependency tree... 586s Reading state information... 587s Calculating upgrade... 587s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 587s Reading package lists... 587s Building dependency tree... 587s Reading state information... 587s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 588s autopkgtest [20:25:27]: rebooting testbed after setup commands that affected boot 625s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 637s Reading package lists... 637s Building dependency tree... 637s Reading state information... 638s Starting pkgProblemResolver with broken count: 0 638s Starting 2 pkgProblemResolver with broken count: 0 638s Done 638s The following additional packages will be installed: 638s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 638s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 638s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 638s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 638s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 638s libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev 638s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 638s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 638s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 638s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 638s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 638s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 638s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 638s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 638s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 638s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 638s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 638s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 638s r-cran-abind r-cran-deldir r-cran-goftest r-cran-lattice r-cran-matrix 638s r-cran-mgcv r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat 638s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 638s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 638s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-survival r-cran-tensor 638s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 638s Suggested packages: 638s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 638s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 638s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 638s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 638s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 638s r-base-html texlive-base texlive-latex-base texlive-plain-generic 638s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 638s texlive-latex-recommended texlive-latex-extra texinfo 638s Recommended packages: 638s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 638s r-doc-html r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv 638s r-cran-glmnet libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 638s x11-utils x11-xserver-utils 639s The following NEW packages will be installed: 639s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 639s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 639s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 639s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 639s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 639s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 639s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 639s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 639s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 639s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 639s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 639s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 639s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 639s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 639s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 639s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 639s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 639s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 639s r-base-dev r-cran-abind r-cran-deldir r-cran-goftest r-cran-lattice 639s r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-polyclip r-cran-rpart 639s r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 639s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 639s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils 639s r-cran-survival r-cran-tensor rpcsvc-proto unzip x11-common xdg-utils zip 639s zlib1g-dev 639s 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. 639s Need to get 169 MB/169 MB of archives. 639s After this operation, 468 MB of additional disk space will be used. 639s Get:1 /tmp/autopkgtest.C8fBFc/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 639s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 639s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 639s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 639s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 639s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 639s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 639s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 639s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 639s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 639s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 640s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 640s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 640s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 640s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 640s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 640s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 640s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 640s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 640s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 640s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 640s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 640s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 640s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 640s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 641s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 641s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 641s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 641s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 641s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 641s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 641s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 641s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 641s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 641s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 641s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 641s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 641s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 641s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 641s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 641s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 641s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 641s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 641s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 641s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 641s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 641s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 641s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 641s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 641s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 641s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 641s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 641s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 641s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 641s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 641s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 641s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 641s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 641s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 641s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 641s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 641s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 641s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 641s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 641s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 641s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 641s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 641s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 641s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 641s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 641s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 641s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 641s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 641s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 641s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 641s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 641s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 641s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 642s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 642s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 642s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 642s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 642s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 642s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 642s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 642s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 642s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 642s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 642s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 642s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 642s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 642s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 642s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 642s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 642s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 642s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 642s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 642s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 642s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 642s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 642s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 642s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 642s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 643s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 643s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 643s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 643s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 643s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 643s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 643s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 643s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 643s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 643s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 644s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 644s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 644s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 644s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 644s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 644s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.geom arm64 3.2-8-1 [3805 kB] 644s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.random arm64 3.2-2-1 [1127 kB] 644s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 644s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 644s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 644s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.model arm64 3.2-8-1 [3289 kB] 644s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.linnet arm64 3.1-3-1 [1404 kB] 644s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 645s Preconfiguring packages ... 646s Fetched 169 MB in 6s (28.3 MB/s) 646s Selecting previously unselected package libc-dev-bin. 646s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 646s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 646s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 646s Selecting previously unselected package linux-libc-dev:arm64. 646s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 646s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 646s Selecting previously unselected package libcrypt-dev:arm64. 646s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 646s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 646s Selecting previously unselected package libtirpc-dev:arm64. 646s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 646s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 646s Selecting previously unselected package libnsl-dev:arm64. 646s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 646s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 646s Selecting previously unselected package rpcsvc-proto. 646s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 646s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 646s Selecting previously unselected package libc6-dev:arm64. 646s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 646s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 647s Selecting previously unselected package libisl23:arm64. 647s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 647s Unpacking libisl23:arm64 (0.26-3) ... 647s Selecting previously unselected package libmpc3:arm64. 647s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 647s Unpacking libmpc3:arm64 (1.3.1-1) ... 647s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 647s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 647s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 647s Selecting previously unselected package cpp-13. 647s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 647s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 647s Selecting previously unselected package cpp-aarch64-linux-gnu. 647s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 647s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 647s Selecting previously unselected package cpp. 647s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 647s Unpacking cpp (4:13.2.0-7ubuntu1) ... 647s Selecting previously unselected package libcc1-0:arm64. 647s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package libgomp1:arm64. 647s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package libitm1:arm64. 647s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package libatomic1:arm64. 647s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package libasan8:arm64. 647s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package liblsan0:arm64. 647s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package libtsan2:arm64. 647s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 647s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 647s Selecting previously unselected package libubsan1:arm64. 648s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 648s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 648s Selecting previously unselected package libhwasan0:arm64. 648s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 648s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 648s Selecting previously unselected package libgcc-13-dev:arm64. 648s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 648s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 648s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 648s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 648s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 648s Selecting previously unselected package gcc-13. 648s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 648s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 648s Selecting previously unselected package gcc-aarch64-linux-gnu. 648s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 648s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 648s Selecting previously unselected package gcc. 648s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 648s Unpacking gcc (4:13.2.0-7ubuntu1) ... 648s Selecting previously unselected package libstdc++-13-dev:arm64. 648s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 648s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 648s Selecting previously unselected package g++-13-aarch64-linux-gnu. 648s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 648s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 649s Selecting previously unselected package g++-13. 649s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 649s Unpacking g++-13 (13.2.0-17ubuntu2) ... 649s Selecting previously unselected package g++-aarch64-linux-gnu. 649s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 649s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 649s Selecting previously unselected package g++. 649s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 649s Unpacking g++ (4:13.2.0-7ubuntu1) ... 649s Selecting previously unselected package build-essential. 649s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 649s Unpacking build-essential (12.10ubuntu1) ... 649s Selecting previously unselected package dctrl-tools. 649s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 649s Unpacking dctrl-tools (2.24-3build2) ... 649s Selecting previously unselected package fonts-dejavu-mono. 649s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 649s Unpacking fonts-dejavu-mono (2.37-8) ... 649s Selecting previously unselected package fonts-dejavu-core. 649s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 649s Unpacking fonts-dejavu-core (2.37-8) ... 649s Selecting previously unselected package fontconfig-config. 649s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 649s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 649s Selecting previously unselected package libfontconfig1:arm64. 649s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 649s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 649s Selecting previously unselected package fontconfig. 649s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 649s Unpacking fontconfig (2.15.0-1ubuntu1) ... 649s Selecting previously unselected package libgfortran5:arm64. 649s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 649s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 649s Selecting previously unselected package libgfortran-13-dev:arm64. 649s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 649s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 649s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 650s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 650s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 650s Selecting previously unselected package gfortran-13. 650s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 650s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 650s Selecting previously unselected package gfortran-aarch64-linux-gnu. 650s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 650s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 650s Selecting previously unselected package gfortran. 650s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 650s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 650s Selecting previously unselected package icu-devtools. 650s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 650s Unpacking icu-devtools (74.2-1ubuntu1) ... 650s Selecting previously unselected package libblas3:arm64. 650s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 650s Unpacking libblas3:arm64 (3.12.0-3) ... 650s Selecting previously unselected package libblas-dev:arm64. 650s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 650s Unpacking libblas-dev:arm64 (3.12.0-3) ... 650s Selecting previously unselected package libbz2-dev:arm64. 650s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 650s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 650s Selecting previously unselected package libpixman-1-0:arm64. 650s Preparing to unpack .../049-libpixman-1-0_0.42.2-1_arm64.deb ... 650s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 650s Selecting previously unselected package libxcb-render0:arm64. 650s Preparing to unpack .../050-libxcb-render0_1.15-1_arm64.deb ... 650s Unpacking libxcb-render0:arm64 (1.15-1) ... 650s Selecting previously unselected package libxcb-shm0:arm64. 650s Preparing to unpack .../051-libxcb-shm0_1.15-1_arm64.deb ... 650s Unpacking libxcb-shm0:arm64 (1.15-1) ... 650s Selecting previously unselected package libxrender1:arm64. 650s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 650s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 650s Selecting previously unselected package libcairo2:arm64. 650s Preparing to unpack .../053-libcairo2_1.18.0-1_arm64.deb ... 650s Unpacking libcairo2:arm64 (1.18.0-1) ... 650s Selecting previously unselected package libdatrie1:arm64. 650s Preparing to unpack .../054-libdatrie1_0.2.13-3_arm64.deb ... 650s Unpacking libdatrie1:arm64 (0.2.13-3) ... 650s Selecting previously unselected package libdeflate0:arm64. 650s Preparing to unpack .../055-libdeflate0_1.19-1_arm64.deb ... 650s Unpacking libdeflate0:arm64 (1.19-1) ... 650s Selecting previously unselected package libgraphite2-3:arm64. 650s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_arm64.deb ... 650s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 650s Selecting previously unselected package libharfbuzz0b:arm64. 650s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2_arm64.deb ... 650s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 650s Selecting previously unselected package x11-common. 650s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 650s Unpacking x11-common (1:7.7+23ubuntu2) ... 650s Selecting previously unselected package libice6:arm64. 650s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_arm64.deb ... 650s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 650s Selecting previously unselected package libicu-dev:arm64. 651s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_arm64.deb ... 651s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 651s Selecting previously unselected package libjpeg-turbo8:arm64. 651s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 651s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 651s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 651s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 651s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 651s Selecting previously unselected package libjpeg8:arm64. 651s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_arm64.deb ... 651s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 651s Selecting previously unselected package libjpeg8-dev:arm64. 651s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 651s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 651s Selecting previously unselected package libjpeg-dev:arm64. 651s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 651s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 651s Selecting previously unselected package liblapack3:arm64. 652s Preparing to unpack .../066-liblapack3_3.12.0-3_arm64.deb ... 652s Unpacking liblapack3:arm64 (3.12.0-3) ... 652s Selecting previously unselected package liblapack-dev:arm64. 652s Preparing to unpack .../067-liblapack-dev_3.12.0-3_arm64.deb ... 652s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 652s Selecting previously unselected package liblerc4:arm64. 652s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 652s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 652s Selecting previously unselected package libncurses-dev:arm64. 652s Preparing to unpack .../069-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 652s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 652s Selecting previously unselected package libthai-data. 652s Preparing to unpack .../070-libthai-data_0.1.29-2_all.deb ... 652s Unpacking libthai-data (0.1.29-2) ... 652s Selecting previously unselected package libthai0:arm64. 652s Preparing to unpack .../071-libthai0_0.1.29-2_arm64.deb ... 652s Unpacking libthai0:arm64 (0.1.29-2) ... 652s Selecting previously unselected package libpango-1.0-0:arm64. 652s Preparing to unpack .../072-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 652s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 652s Selecting previously unselected package libpangoft2-1.0-0:arm64. 652s Preparing to unpack .../073-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 652s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 652s Selecting previously unselected package libpangocairo-1.0-0:arm64. 653s Preparing to unpack .../074-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 653s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 653s Selecting previously unselected package libpaper1:arm64. 653s Preparing to unpack .../075-libpaper1_1.1.29_arm64.deb ... 653s Unpacking libpaper1:arm64 (1.1.29) ... 653s Selecting previously unselected package libpaper-utils. 653s Preparing to unpack .../076-libpaper-utils_1.1.29_arm64.deb ... 653s Unpacking libpaper-utils (1.1.29) ... 653s Selecting previously unselected package libpcre2-16-0:arm64. 653s Preparing to unpack .../077-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 653s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 653s Selecting previously unselected package libpcre2-32-0:arm64. 653s Preparing to unpack .../078-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 653s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 653s Selecting previously unselected package libpcre2-posix3:arm64. 653s Preparing to unpack .../079-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 653s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 653s Selecting previously unselected package libpcre2-dev:arm64. 653s Preparing to unpack .../080-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 653s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 653s Selecting previously unselected package libpkgconf3:arm64. 653s Preparing to unpack .../081-libpkgconf3_1.8.1-2_arm64.deb ... 653s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 653s Selecting previously unselected package zlib1g-dev:arm64. 653s Preparing to unpack .../082-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 653s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 653s Selecting previously unselected package libpng-dev:arm64. 653s Preparing to unpack .../083-libpng-dev_1.6.43-1_arm64.deb ... 653s Unpacking libpng-dev:arm64 (1.6.43-1) ... 653s Selecting previously unselected package libreadline-dev:arm64. 653s Preparing to unpack .../084-libreadline-dev_8.2-3_arm64.deb ... 653s Unpacking libreadline-dev:arm64 (8.2-3) ... 653s Selecting previously unselected package libsharpyuv0:arm64. 653s Preparing to unpack .../085-libsharpyuv0_1.3.2-0.4_arm64.deb ... 653s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 653s Selecting previously unselected package libsm6:arm64. 653s Preparing to unpack .../086-libsm6_2%3a1.2.3-1build2_arm64.deb ... 653s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 653s Selecting previously unselected package libtcl8.6:arm64. 653s Preparing to unpack .../087-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 653s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 653s Selecting previously unselected package libjbig0:arm64. 653s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 653s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 653s Selecting previously unselected package libwebp7:arm64. 654s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 654s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 654s Selecting previously unselected package libtiff6:arm64. 654s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 654s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 654s Selecting previously unselected package libxft2:arm64. 654s Preparing to unpack .../091-libxft2_2.3.6-1_arm64.deb ... 654s Unpacking libxft2:arm64 (2.3.6-1) ... 654s Selecting previously unselected package libxss1:arm64. 654s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build2_arm64.deb ... 654s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 654s Selecting previously unselected package libtk8.6:arm64. 654s Preparing to unpack .../093-libtk8.6_8.6.13-2_arm64.deb ... 654s Unpacking libtk8.6:arm64 (8.6.13-2) ... 654s Selecting previously unselected package libxt6:arm64. 654s Preparing to unpack .../094-libxt6_1%3a1.2.1-1.1_arm64.deb ... 654s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 654s Selecting previously unselected package pkgconf-bin. 654s Preparing to unpack .../095-pkgconf-bin_1.8.1-2_arm64.deb ... 654s Unpacking pkgconf-bin (1.8.1-2) ... 654s Selecting previously unselected package pkgconf:arm64. 654s Preparing to unpack .../096-pkgconf_1.8.1-2_arm64.deb ... 654s Unpacking pkgconf:arm64 (1.8.1-2) ... 654s Selecting previously unselected package pkg-config:arm64. 654s Preparing to unpack .../097-pkg-config_1.8.1-2_arm64.deb ... 654s Unpacking pkg-config:arm64 (1.8.1-2) ... 654s Selecting previously unselected package zip. 654s Preparing to unpack .../098-zip_3.0-13_arm64.deb ... 654s Unpacking zip (3.0-13) ... 654s Selecting previously unselected package unzip. 654s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ... 654s Unpacking unzip (6.0-28ubuntu3) ... 654s Selecting previously unselected package xdg-utils. 654s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 654s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 654s Selecting previously unselected package r-base-core. 654s Preparing to unpack .../101-r-base-core_4.3.2-1build1_arm64.deb ... 654s Unpacking r-base-core (4.3.2-1build1) ... 654s Selecting previously unselected package liblzma-dev:arm64. 654s Preparing to unpack .../102-liblzma-dev_5.4.5-0.3_arm64.deb ... 654s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 654s Selecting previously unselected package r-base-dev. 654s Preparing to unpack .../103-r-base-dev_4.3.2-1build1_all.deb ... 654s Unpacking r-base-dev (4.3.2-1build1) ... 654s Selecting previously unselected package pkg-r-autopkgtest. 654s Preparing to unpack .../104-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 654s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 654s Selecting previously unselected package r-cran-abind. 655s Preparing to unpack .../105-r-cran-abind_1.4-5-2_all.deb ... 655s Unpacking r-cran-abind (1.4-5-2) ... 655s Selecting previously unselected package r-cran-deldir. 655s Preparing to unpack .../106-r-cran-deldir_2.0-4-1_arm64.deb ... 655s Unpacking r-cran-deldir (2.0-4-1) ... 655s Selecting previously unselected package r-cran-goftest. 655s Preparing to unpack .../107-r-cran-goftest_1.2-3-1_arm64.deb ... 655s Unpacking r-cran-goftest (1.2-3-1) ... 655s Selecting previously unselected package r-cran-lattice. 655s Preparing to unpack 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package r-cran-rpart. 657s Preparing to unpack .../114-r-cran-rpart_4.1.23-1_arm64.deb ... 657s Unpacking r-cran-rpart (4.1.23-1) ... 657s Selecting previously unselected package r-cran-spatstat.utils. 657s Preparing to unpack .../115-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 657s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 657s Selecting previously unselected package r-cran-spatstat.data. 657s Preparing to unpack .../116-r-cran-spatstat.data_3.0-4-1_all.deb ... 657s Unpacking r-cran-spatstat.data (3.0-4-1) ... 657s Selecting previously unselected package r-cran-spatstat.geom. 657s Preparing to unpack .../117-r-cran-spatstat.geom_3.2-8-1_arm64.deb ... 657s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 657s Selecting previously unselected package r-cran-spatstat.random. 657s Preparing to unpack .../118-r-cran-spatstat.random_3.2-2-1_arm64.deb ... 657s Unpacking r-cran-spatstat.random (3.2-2-1) ... 657s Selecting previously unselected package r-cran-tensor. 657s Preparing to unpack .../119-r-cran-tensor_1.5-4_all.deb ... 657s Unpacking r-cran-tensor (1.5-4) ... 657s Selecting previously unselected package r-cran-spatstat.sparse. 657s Preparing to unpack .../120-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 657s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 657s Selecting previously unselected package r-cran-spatstat.explore. 657s Preparing to unpack .../121-r-cran-spatstat.explore_3.2-5-1_arm64.deb ... 657s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 657s Selecting previously unselected package r-cran-spatstat.model. 657s Preparing to unpack .../122-r-cran-spatstat.model_3.2-8-1_arm64.deb ... 657s Unpacking r-cran-spatstat.model (3.2-8-1) ... 657s Selecting previously unselected package r-cran-spatstat.linnet. 657s Preparing to unpack .../123-r-cran-spatstat.linnet_3.1-3-1_arm64.deb ... 657s Unpacking r-cran-spatstat.linnet (3.1-3-1) ... 657s Selecting previously unselected package r-cran-spatstat. 657s Preparing to unpack .../124-r-cran-spatstat_3.0-7-1_arm64.deb ... 657s Unpacking r-cran-spatstat (3.0-7-1) ... 657s Selecting previously unselected package autopkgtest-satdep. 657s Preparing to unpack .../125-2-autopkgtest-satdep.deb ... 657s Unpacking autopkgtest-satdep (0) ... 657s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 657s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 657s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 657s Setting up libpaper1:arm64 (1.1.29) ... 658s 658s Creating config file /etc/papersize with new version 658s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 658s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 658s Setting up libdatrie1:arm64 (0.2.13-3) ... 658s Setting up libxcb-render0:arm64 (1.15-1) ... 658s Setting up unzip (6.0-28ubuntu3) ... 658s Setting up x11-common (1:7.7+23ubuntu2) ... 659s Setting up libdeflate0:arm64 (1.19-1) ... 659s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 659s Setting up libxcb-shm0:arm64 (1.15-1) ... 659s Setting up libpaper-utils (1.1.29) ... 659s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 659s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 659s Setting up zip (3.0-13) ... 659s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 659s Setting up libblas3:arm64 (3.12.0-3) ... 659s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 659s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 659s Setting up libpkgconf3:arm64 (1.8.1-2) ... 659s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 659s Setting up fonts-dejavu-mono (2.37-8) ... 659s Setting up libmpc3:arm64 (1.3.1-1) ... 659s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 659s Setting up icu-devtools (74.2-1ubuntu1) ... 659s Setting up fonts-dejavu-core (2.37-8) ... 659s Setting up pkgconf-bin (1.8.1-2) ... 659s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 659s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libwebp7:arm64 (1.3.2-0.4) ... 659s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 659s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 659s Setting up libnsl-dev:arm64 (1.3.0-3) ... 659s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 659s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 659s Setting up libthai-data (0.1.29-2) ... 659s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 659s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libisl23:arm64 (0.26-3) ... 659s Setting up libc-dev-bin (2.39-0ubuntu2) ... 659s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 659s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 659s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 659s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libblas-dev:arm64 (3.12.0-3) ... 659s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 659s Setting up dctrl-tools (2.24-3build2) ... 659s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 659s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 659s Setting up libice6:arm64 (2:1.0.10-1build2) ... 659s Setting up liblapack3:arm64 (3.12.0-3) ... 659s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 659s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 659s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 660s Setting up pkgconf:arm64 (1.8.1-2) ... 660s Setting up libthai0:arm64 (0.1.29-2) ... 660s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 660s Setting up liblapack-dev:arm64 (3.12.0-3) ... 660s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 660s Setting up pkg-config:arm64 (1.8.1-2) ... 660s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 660s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 660s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 660s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 660s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 660s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 660s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 660s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 660s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 660s Setting up fontconfig (2.15.0-1ubuntu1) ... 662s Regenerating fonts cache... done. 662s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 662s Setting up libxft2:arm64 (2.3.6-1) ... 662s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 662s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 662s Setting up cpp-13 (13.2.0-17ubuntu2) ... 662s Setting up libtk8.6:arm64 (8.6.13-2) ... 662s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 662s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 662s Setting up libreadline-dev:arm64 (8.2-3) ... 662s Setting up libcairo2:arm64 (1.18.0-1) ... 662s Setting up gcc-13 (13.2.0-17ubuntu2) ... 662s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 662s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 662s Setting up cpp (4:13.2.0-7ubuntu1) ... 662s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 662s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 662s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 662s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 662s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 662s Setting up g++-13 (13.2.0-17ubuntu2) ... 662s Setting up libpng-dev:arm64 (1.6.43-1) ... 662s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 662s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 662s Setting up gcc (4:13.2.0-7ubuntu1) ... 662s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 662s Setting up r-base-core (4.3.2-1build1) ... 662s 662s Creating config file /etc/R/Renviron with new version 662s Setting up r-cran-lattice (0.22-5-1) ... 662s Setting up r-cran-nlme (3.1.164-1) ... 662s Setting up r-cran-spatstat.utils (3.0-4-1) ... 662s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 662s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 662s Setting up r-cran-tensor (1.5-4) ... 662s Setting up r-cran-abind (1.4-5-2) ... 662s Setting up r-cran-polyclip (1.10-6-1) ... 662s Setting up gfortran (4:13.2.0-7ubuntu1) ... 662s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 662s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 662s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 662s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 662s Setting up r-cran-deldir (2.0-4-1) ... 662s Setting up r-cran-goftest (1.2-3-1) ... 662s Setting up r-cran-matrix (1.6-5-1) ... 662s Setting up r-cran-spatstat.sparse (3.0-3-1) ... 662s Setting up r-cran-mgcv (1.9-1-1) ... 662s Setting up g++ (4:13.2.0-7ubuntu1) ... 662s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 662s Setting up build-essential (12.10ubuntu1) ... 662s Setting up r-base-dev (4.3.2-1build1) ... 662s Setting up r-cran-survival (3.5-8-1) ... 662s Setting up r-cran-spatstat.data (3.0-4-1) ... 662s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 662s Setting up r-cran-spatstat.geom (3.2-8-1) ... 662s Setting up r-cran-rpart (4.1.23-1) ... 662s Setting up r-cran-spatstat.random (3.2-2-1) ... 662s Setting up r-cran-spatstat.explore (3.2-5-1) ... 662s Setting up r-cran-spatstat.model (3.2-8-1) ... 662s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 662s Setting up r-cran-spatstat (3.0-7-1) ... 662s Setting up autopkgtest-satdep (0) ... 662s Processing triggers for man-db (2.12.0-3) ... 664s Processing triggers for install-info (7.1-3) ... 664s Processing triggers for libc-bin (2.39-0ubuntu2) ... 671s (Reading database ... 80981 files and directories currently installed.) 671s Removing autopkgtest-satdep (0) ... 673s autopkgtest [20:26:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 673s autopkgtest [20:26:52]: test pkg-r-autopkgtest: [----------------------- 673s Test: Try to load the R library spatstat.linnet 673s 673s R version 4.3.2 (2023-10-31) -- "Eye Holes" 673s Copyright (C) 2023 The R Foundation for Statistical Computing 673s Platform: aarch64-unknown-linux-gnu (64-bit) 673s 673s R is free software and comes with ABSOLUTELY NO WARRANTY. 673s You are welcome to redistribute it under certain conditions. 673s Type 'license()' or 'licence()' for distribution details. 673s 673s R is a collaborative project with many contributors. 673s Type 'contributors()' for more information and 673s 'citation()' on how to cite R or R packages in publications. 673s 673s Type 'demo()' for some demos, 'help()' for on-line help, or 673s 'help.start()' for an HTML browser interface to help. 673s Type 'q()' to quit R. 673s 673s > library('spatstat.linnet') 673s Loading required package: spatstat.data 674s Loading required package: spatstat.geom 675s spatstat.geom 3.2-8 675s Loading required package: spatstat.random 675s spatstat.random 3.2-2 675s Loading required package: spatstat.explore 675s Loading required package: nlme 675s spatstat.explore 3.2-5 675s Loading required package: spatstat.model 675s Loading required package: rpart 675s spatstat.model 3.2-8 675s spatstat.linnet 3.1-3 675s > 675s > 675s Other tests are currently unsupported! 675s They will be progressively added. 675s autopkgtest [20:26:54]: test pkg-r-autopkgtest: -----------------------] 676s autopkgtest [20:26:55]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 676s pkg-r-autopkgtest PASS 676s autopkgtest [20:26:55]: @@@@@@@@@@@@@@@@@@@@ summary 676s run-unit-test PASS 676s pkg-r-autopkgtest PASS 687s Creating nova instance adt-noble-arm64-r-cran-spatstat.linnet-20240316-201539-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)... 687s Creating nova instance adt-noble-arm64-r-cran-spatstat.linnet-20240316-201539-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...