0s autopkgtest [03:42:45]: starting date: 2024-03-13 0s autopkgtest [03:42:45]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [03:42:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mm95ztwj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-sf,src:cfitsio,src:gdal,src:geos,src:libkml,src:libpng1.6,src:netcdf,src:openssl,src:proj,src:spatialite,src:wp2latex,src:xerces-c,src:zlib --apt-upgrade r-cran-sf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-sf/1.0-15+dfsg-1build1 cfitsio/4.3.1-1.1 gdal/3.8.4+dfsg-3build1 geos/3.12.1-3 libkml/1.3.0-12 libpng1.6/1.6.43-3 netcdf/1:4.9.2-5ubuntu1 openssl/3.0.13-0ubuntu1 proj/9.4.0-1 spatialite/5.1.0-3 wp2latex/4.4~ds-1build1 xerces-c/3.2.4+debian-1.2 zlib/1:1.3.dfsg-3.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-6.secgroup --name adt-noble-arm64-r-cran-sf-20240313-021617-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 130s autopkgtest [03:44:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 130s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [39.7 kB] 131s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2782 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [447 kB] 132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [598 kB] 132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 132s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 132s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 132s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3175 kB] 132s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 132s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [41.8 kB] 132s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 142s Fetched 7237 kB in 4s (1674 kB/s) 142s Reading package lists... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 158s Calculating upgrade... 159s The following packages will be REMOVED: 160s libssl3 160s The following NEW packages will be installed: 160s libssl3t64 160s The following packages will be upgraded: 160s cloud-init firmware-sof-signed gdisk klibc-utils libklibc openssl zlib1g 160s 7 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 160s Need to get 7732 kB of archives. 160s After this operation, 89.1 kB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 160s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 160s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu1 [61.7 kB] 160s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 firmware-sof-signed all 2023.12.1-1ubuntu1 [3906 kB] 160s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 klibc-utils arm64 2.0.13-4 [114 kB] 160s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libklibc arm64 2.0.13-4 [51.4 kB] 160s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 cloud-init all 24.1.1-0ubuntu1 [597 kB] 160s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 gdisk arm64 1.0.10-1 [249 kB] 161s Preconfiguring packages ... 161s Fetched 7732 kB in 1s (8016 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 162s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 162s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 162s wget depends on libssl3 (>= 3.0.0). 162s u-boot-tools depends on libssl3 (>= 3.0.0). 162s tnftp depends on libssl3 (>= 3.0.0). 162s tcpdump depends on libssl3 (>= 3.0.0). 162s systemd-resolved depends on libssl3 (>= 3.0.0). 162s systemd depends on libssl3 (>= 3.0.0). 162s sudo depends on libssl3 (>= 3.0.0). 162s sbsigntool depends on libssl3 (>= 3.0.0). 162s rsync depends on libssl3 (>= 3.0.0). 162s python3-cryptography depends on libssl3 (>= 3.0.0). 162s openssh-server depends on libssl3 (>= 3.0.10). 162s openssh-client depends on libssl3 (>= 3.0.10). 162s mtd-utils depends on libssl3 (>= 3.0.0). 162s mokutil depends on libssl3 (>= 3.0.0). 162s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 162s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 162s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 162s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 162s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 162s libnvme1 depends on libssl3 (>= 3.0.0). 162s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 162s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 162s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 162s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 162s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 162s kmod depends on libssl3 (>= 3.0.0). 162s dhcpcd-base depends on libssl3 (>= 3.0.0). 162s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 162s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 162s Selecting previously unselected package libssl3t64:arm64. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75845 files and directories currently installed.) 163s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 163s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 163s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 163s Unpacking zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 163s Setting up zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 163s Preparing to unpack .../firmware-sof-signed_2023.12.1-1ubuntu1_all.deb ... 163s Unpacking firmware-sof-signed (2023.12.1-1ubuntu1) over (2.2.6-1ubuntu4) ... 164s Preparing to unpack .../klibc-utils_2.0.13-4_arm64.deb ... 164s Unpacking klibc-utils (2.0.13-4) over (2.0.13-2ubuntu1) ... 164s Preparing to unpack .../libklibc_2.0.13-4_arm64.deb ... 164s Unpacking libklibc:arm64 (2.0.13-4) over (2.0.13-2ubuntu1) ... 164s Preparing to unpack .../cloud-init_24.1.1-0ubuntu1_all.deb ... 165s Unpacking cloud-init (24.1.1-0ubuntu1) over (24.1-0ubuntu1) ... 166s Preparing to unpack .../gdisk_1.0.10-1_arm64.deb ... 166s Unpacking gdisk (1.0.10-1) over (1.0.9-2.1) ... 166s Setting up cloud-init (24.1.1-0ubuntu1) ... 171s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 171s Setting up firmware-sof-signed (2023.12.1-1ubuntu1) ... 171s Setting up gdisk (1.0.10-1) ... 171s Setting up libklibc:arm64 (2.0.13-4) ... 171s Setting up klibc-utils (2.0.13-4) ... 171s Setting up openssl (3.0.13-0ubuntu1) ... 171s Processing triggers for libc-bin (2.39-0ubuntu2) ... 171s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 171s Processing triggers for man-db (2.12.0-3) ... 173s Processing triggers for initramfs-tools (0.142ubuntu20) ... 173s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 174s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 236s System running in EFI mode, skipping. 237s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 237s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 237s Reading package lists... 238s Building dependency tree... 238s Reading state information... 239s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s sh: Attempting to set up Debian/Ubuntu apt sources automatically 241s sh: Distribution appears to be Ubuntu 250s Reading package lists... 251s Building dependency tree... 251s Reading state information... 252s eatmydata is already the newest version (131-1). 252s dbus is already the newest version (1.14.10-4ubuntu1). 252s dbus set to manually installed. 252s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 252s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 252s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 252s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 253s Reading package lists... 253s Building dependency tree... 253s Reading state information... 255s rng-tools-debian is already the newest version (2.4). 255s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 255s Reading package lists... 256s Building dependency tree... 256s Reading state information... 257s haveged is already the newest version (1.9.14-1ubuntu1). 257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 257s Reading package lists... 258s Building dependency tree... 258s Reading state information... 259s The following packages will be REMOVED: 259s cloud-init* python3-configobj* python3-debconf* 260s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 260s After this operation, 3252 kB disk space will be freed. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 261s Removing cloud-init (24.1.1-0ubuntu1) ... 262s Removing python3-configobj (5.0.8-3) ... 263s Removing python3-debconf (1.5.86) ... 264s Processing triggers for man-db (2.12.0-3) ... 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75480 files and directories currently installed.) 265s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 268s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 268s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 269s Reading package lists... 270s Building dependency tree... 270s Reading state information... 271s linux-generic is already the newest version (6.8.0-11.11+1). 271s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 272s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 272s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 272s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 272s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 273s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 284s Reading package lists... 284s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 284s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 284s Reading package lists... 285s Building dependency tree... 285s Reading state information... 286s Calculating upgrade... 287s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 287s Reading package lists... 288s Building dependency tree... 288s Reading state information... 289s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 290s autopkgtest [03:47:35]: rebooting testbed after setup commands that affected boot 446s autopkgtest [03:50:11]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 447s autopkgtest [03:50:12]: testbed dpkg architecture: arm64 449s autopkgtest [03:50:14]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sf 450s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 450s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 450s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 452s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe r-cran-sf 1.0-15+dfsg-1build1 (dsc) [2804 B] 452s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe r-cran-sf 1.0-15+dfsg-1build1 (tar) [1969 kB] 452s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe r-cran-sf 1.0-15+dfsg-1build1 (diff) [5128 B] 453s gpgv: Signature made Tue Mar 12 22:57:28 2024 UTC 453s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 453s gpgv: issuer "steve.langasek@ubuntu.com" 453s gpgv: Can't check signature: No public key 453s dpkg-source: warning: cannot verify inline signature for ./r-cran-sf_1.0-15+dfsg-1build1.dsc: no acceptable signature found 453s autopkgtest [03:50:18]: testing package r-cran-sf version 1.0-15+dfsg-1build1 453s autopkgtest [03:50:18]: build not needed 463s autopkgtest [03:50:28]: test run-unit-test: preparing testbed 467s Reading package lists... 468s Building dependency tree... 468s Reading state information... 468s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 469s Starting 2 pkgProblemResolver with broken count: 0 469s Done 470s Done 470s Starting pkgProblemResolver with broken count: 0 471s Starting 2 pkgProblemResolver with broken count: 0 471s Done 472s The following additional packages will be installed: 472s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 472s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 472s gdal-plugins javascript-common libaec0 libarmadillo12 libarpack2 libblas3 472s libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 472s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgdal34t64 libgeos-c1t64 472s libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 472s libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 472s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libjbig0 472s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 472s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 472s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 472s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 472s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64 472s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 472s liblua5.4-0 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 472s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 472s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 472s libpoppler134 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 472s libsnappy1v5 libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data 472s libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 472s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 472s libxss1 libxt6 littler mysql-common node-bootstrap-sass node-html5shiv 472s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 472s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob 472s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class 472s r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr 472s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 472s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 472s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 472s r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest 472s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 472s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth 472s r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval 472s r-cran-lifecycle r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps 472s r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime 472s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar 472s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 472s r-cran-plogr r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises 472s r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster 472s r-cran-rcolorbrewer r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang 472s r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql r-cran-rprojroot 472s r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shiny 472s r-cran-sourcetools r-cran-sp r-cran-spatstat r-cran-spatstat.data 472s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 472s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 472s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 472s r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat 472s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units 472s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr 472s r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip 472s x11-common xdg-utils zip 472s Suggested packages: 472s apache2 | lighttpd | httpd geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc 472s libhdf4-alt-dev hdf4-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec 472s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 472s libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs 472s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils 472s odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 nodejs 472s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 472s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 472s ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info 472s | r-doc-pdf r-mathlib r-base-html r-cran-roxygen2 r-cran-ff r-cran-spelling 472s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png 472s r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-markdown 472s r-cran-magick r-cran-getopt r-cran-mapproj r-cran-mapdata r-cran-formattable 472s r-cran-nanotime r-cran-palmerpenguins r-cran-vdiffr r-cran-inline 472s r-cran-hmisc r-cran-rvest r-cran-nanoarrow r-cran-bench r-cran-here 472s r-cran-hms r-cran-plm r-cran-zoo 472s Recommended packages: 472s proj-bin libheif-plugin-aomenc libheif-plugin-x265 node-jquery poppler-data 472s r-recommended r-base-dev r-doc-html r-cran-thematic r-cran-cliapp 472s r-cran-mockery r-cran-spdata r-cran-tinytest r-cran-htmlwidgets 472s r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-dt r-cran-bench 472s r-cran-decor r-cran-lobstr r-cran-progress r-cran-spelling r-cran-webutils 472s r-cran-gh r-cran-broom r-cran-dbplyr r-cran-rmysql r-cran-unitizer 472s r-cran-rsvg r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp 472s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr 472s r-cran-testit r-cran-cairo r-cran-markdown r-cran-jpeg r-cran-png 472s r-cran-readr r-cran-r.rsp r-cran-codetools r-cran-formatr r-cran-gridsvg 472s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 472s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-geosphere 472s r-cran-sodium r-cran-future r-cran-future.apply r-cran-lubridate 472s r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-webfakes 472s r-cran-cba r-cran-pingr r-cran-ncdf4 r-cran-igraph r-cran-gstat 472s r-cran-fields r-cran-exactextractr r-cran-usethis r-cran-dygraphs 472s r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-gert r-cran-hms 472s r-cran-rvest r-cran-dichromat r-cran-sm r-cran-gsl r-cran-locfit 472s r-cran-spatial r-cran-nleqslv r-cran-glmnet r-cran-pcict r-cran-rnetcdf 472s r-cran-clue r-cran-cubelyr r-cran-fnn r-cran-ggforce r-cran-ggthemes 472s r-cran-mapdata r-cran-ncdfgeom r-cran-ncmeta r-cran-plm r-cran-randomforest 472s r-cran-spacetime r-cran-viridis r-cran-xts r-cran-zoo r-cran-xml 472s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 472s r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl 472s libx11-protocol-perl x11-utils x11-xserver-utils 473s The following packages will be REMOVED: 473s libpng16-16 473s The following NEW packages will be installed: 473s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 473s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 473s gdal-plugins javascript-common libaec0 libarmadillo12 libarpack2 libblas3 473s libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 473s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgdal34t64 libgeos-c1t64 473s libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 473s libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 473s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libjbig0 473s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 473s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 473s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 473s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 473s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64 473s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 473s liblua5.4-0 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 473s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 473s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 473s libpoppler134 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 473s libsnappy1v5 libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data 473s libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 473s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 473s libxss1 libxt6 littler mysql-common node-bootstrap-sass node-html5shiv 473s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 473s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob 473s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class 473s r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr 473s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 473s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 473s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 473s r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest 473s r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 473s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth 473s r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval 473s r-cran-lifecycle r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps 473s r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime 473s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar 473s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 473s r-cran-plogr r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises 473s r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster 473s r-cran-rcolorbrewer r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang 473s r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql r-cran-rprojroot 473s r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shiny 473s r-cran-sourcetools r-cran-sp r-cran-spatstat r-cran-spatstat.data 473s r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet 473s r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse 473s r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr 473s r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat 473s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units 473s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr 473s r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip 473s x11-common xdg-utils zip 473s 0 upgraded, 252 newly installed, 1 to remove and 0 not upgraded. 473s 1 not fully installed or removed. 473s Need to get 219 MB of archives. 473s After this operation, 657 MB of additional disk space will be used. 473s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 473s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 473s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 473s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 473s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 473s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 473s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 473s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 473s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 473s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 473s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 473s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 473s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 473s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 473s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 473s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 473s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 474s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 474s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 474s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 474s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 474s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 474s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 474s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 474s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 474s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 474s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 474s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 474s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 474s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 474s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 474s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 474s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 474s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 474s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 474s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 474s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 474s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 474s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 474s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 474s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 474s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 474s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 474s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 474s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 475s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 475s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 475s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 475s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 475s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 475s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 475s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 475s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 475s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 475s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 475s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 475s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 475s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 475s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 475s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 476s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 476s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 476s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gdal-data all 3.8.4+dfsg-3build1 [261 kB] 476s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gdal-plugins arm64 3.8.4+dfsg-3build1 [24.6 kB] 476s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 476s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 476s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 476s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 476s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 476s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 476s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libcfitsio10t64 arm64 4.3.1-1.1 [520 kB] 476s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libminizip1t64 arm64 1:1.3.dfsg-3.1ubuntu1 [22.7 kB] 476s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 476s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 476s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgeos3.12.1t64 arm64 3.12.1-3 [827 kB] 476s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgeos-c1t64 arm64 3.12.1-3 [88.7 kB] 476s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 proj-data all 9.4.0-1 [7885 kB] 476s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libproj25 arm64 9.4.0-1 [1293 kB] 476s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 476s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 476s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 476s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 476s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 476s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 476s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 476s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 476s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 476s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 476s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 476s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmlbase1t64 arm64 1.3.0-12 [47.7 kB] 476s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmldom1t64 arm64 1.3.0-12 [146 kB] 476s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmlengine1t64 arm64 1.3.0-12 [68.1 kB] 476s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 476s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 476s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 476s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu1 [471 kB] 476s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 476s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 476s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 476s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 476s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 477s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 477s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 477s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 477s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 477s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 477s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 477s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libspatialite8t64 arm64 5.1.0-3 [1815 kB] 477s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.2 [874 kB] 477s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgdal34t64 arm64 3.8.4+dfsg-3build1 [7900 kB] 478s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1build1 [2990 kB] 478s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 478s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 478s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 478s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 478s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 479s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 479s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 479s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 479s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 479s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 479s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 479s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 479s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 479s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 479s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 479s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 479s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 479s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 479s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 479s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 479s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 479s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 479s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 479s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 479s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 479s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 479s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 479s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 479s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 479s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 479s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 479s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 479s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 479s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 479s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 479s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 479s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 479s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 480s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 480s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 480s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 480s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 480s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 480s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 480s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 480s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 480s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 480s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 480s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 480s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 480s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 480s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 480s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 480s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 480s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 480s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 480s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lwgeom arm64 0.2-13-3 [382 kB] 480s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 481s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 481s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 481s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-terra arm64 1.7-65-1 [3587 kB] 481s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 481s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 481s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 481s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 481s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 481s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 481s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 481s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 481s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 481s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 481s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 481s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 481s Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 481s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 481s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 481s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 481s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 481s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 481s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 481s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 481s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 481s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 481s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 481s Get:196 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 481s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 481s Get:198 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 481s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 483s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 483s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 483s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 483s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 484s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 484s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 484s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 484s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 484s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 484s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 484s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 484s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 484s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 484s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 484s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 485s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpostgresql arm64 0.7-6+dfsg-1 [374 kB] 485s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 485s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 485s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 485s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 485s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 485s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 485s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 485s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 485s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 485s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.geom arm64 3.2-8-1 [3805 kB] 486s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.random arm64 3.2-2-1 [1127 kB] 486s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 486s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 486s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 486s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 486s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 486s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 486s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 486s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.model arm64 3.2-8-1 [3289 kB] 487s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.linnet arm64 3.1-3-1 [1404 kB] 487s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 487s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 487s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 487s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 487s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 487s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 487s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 487s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 487s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 487s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 487s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 487s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 487s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 487s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 487s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 487s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 487s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 491s Preconfiguring packages ... 491s Fetched 219 MB in 15s (15.0 MB/s) 491s Selecting previously unselected package zip. 491s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75425 files and directories currently installed.) 492s Preparing to unpack .../00-zip_3.0-13_arm64.deb ... 492s Unpacking zip (3.0-13) ... 492s Selecting previously unselected package unzip. 492s Preparing to unpack .../01-unzip_6.0-28ubuntu3_arm64.deb ... 492s Unpacking unzip (6.0-28ubuntu3) ... 492s Selecting previously unselected package libpaper1:arm64. 492s Preparing to unpack .../02-libpaper1_1.1.29_arm64.deb ... 492s Unpacking libpaper1:arm64 (1.1.29) ... 492s Selecting previously unselected package libpaper-utils. 492s Preparing to unpack .../03-libpaper-utils_1.1.29_arm64.deb ... 492s Unpacking libpaper-utils (1.1.29) ... 492s Selecting previously unselected package xdg-utils. 492s Preparing to unpack .../04-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 492s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 492s Selecting previously unselected package libblas3:arm64. 492s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 492s Unpacking libblas3:arm64 (3.12.0-3) ... 492s Selecting previously unselected package fonts-dejavu-mono. 492s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 492s Unpacking fonts-dejavu-mono (2.37-8) ... 492s Selecting previously unselected package fonts-dejavu-core. 492s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 492s Unpacking fonts-dejavu-core (2.37-8) ... 492s Selecting previously unselected package fontconfig-config. 492s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 493s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 493s Selecting previously unselected package libfontconfig1:arm64. 493s Preparing to unpack .../09-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 493s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 493s Selecting previously unselected package libpixman-1-0:arm64. 493s Preparing to unpack .../10-libpixman-1-0_0.42.2-1_arm64.deb ... 493s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 493s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 493s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 493s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 493s 494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75647 files and directories currently installed.) 494s Removing libpng16-16:arm64 (1.6.43-1) ... 494s Selecting previously unselected package libpng16-16t64:arm64. 494s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75637 files and directories currently installed.) 494s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_arm64.deb ... 494s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 494s Selecting previously unselected package libxcb-render0:arm64. 494s Preparing to unpack .../001-libxcb-render0_1.15-1_arm64.deb ... 494s Unpacking libxcb-render0:arm64 (1.15-1) ... 494s Selecting previously unselected package libxcb-shm0:arm64. 494s Preparing to unpack .../002-libxcb-shm0_1.15-1_arm64.deb ... 494s Unpacking libxcb-shm0:arm64 (1.15-1) ... 494s Selecting previously unselected package libxrender1:arm64. 494s Preparing to unpack .../003-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 494s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 494s Selecting previously unselected package libcairo2:arm64. 494s Preparing to unpack .../004-libcairo2_1.18.0-1_arm64.deb ... 494s Unpacking libcairo2:arm64 (1.18.0-1) ... 494s Selecting previously unselected package libgomp1:arm64. 494s Preparing to unpack .../005-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 494s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 494s Selecting previously unselected package libjpeg-turbo8:arm64. 494s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 494s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 494s Selecting previously unselected package libjpeg8:arm64. 494s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_arm64.deb ... 495s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 495s Selecting previously unselected package libgfortran5:arm64. 495s Preparing to unpack .../008-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 495s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 495s Selecting previously unselected package liblapack3:arm64. 495s Preparing to unpack .../009-liblapack3_3.12.0-3_arm64.deb ... 495s Unpacking liblapack3:arm64 (3.12.0-3) ... 495s Selecting previously unselected package fontconfig. 495s Preparing to unpack .../010-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 495s Unpacking fontconfig (2.15.0-1ubuntu1) ... 495s Selecting previously unselected package libgraphite2-3:arm64. 495s Preparing to unpack .../011-libgraphite2-3_1.3.14-2_arm64.deb ... 495s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 495s Selecting previously unselected package libharfbuzz0b:arm64. 495s Preparing to unpack .../012-libharfbuzz0b_8.3.0-2_arm64.deb ... 495s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 495s Selecting previously unselected package libthai-data. 495s Preparing to unpack .../013-libthai-data_0.1.29-2_all.deb ... 495s Unpacking libthai-data (0.1.29-2) ... 495s Selecting previously unselected package libdatrie1:arm64. 495s Preparing to unpack .../014-libdatrie1_0.2.13-3_arm64.deb ... 495s Unpacking libdatrie1:arm64 (0.2.13-3) ... 495s Selecting previously unselected package libthai0:arm64. 495s Preparing to unpack .../015-libthai0_0.1.29-2_arm64.deb ... 495s Unpacking libthai0:arm64 (0.1.29-2) ... 496s Selecting previously unselected package libpango-1.0-0:arm64. 496s Preparing to unpack .../016-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 496s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 496s Selecting previously unselected package libpangoft2-1.0-0:arm64. 496s Preparing to unpack .../017-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 496s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 496s Selecting previously unselected package libpangocairo-1.0-0:arm64. 496s Preparing to unpack .../018-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 496s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 496s Selecting previously unselected package libtcl8.6:arm64. 496s Preparing to unpack .../019-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 496s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 496s Selecting previously unselected package libdeflate0:arm64. 496s Preparing to unpack .../020-libdeflate0_1.19-1_arm64.deb ... 496s Unpacking libdeflate0:arm64 (1.19-1) ... 496s Selecting previously unselected package libjbig0:arm64. 496s Preparing to unpack .../021-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 496s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 496s Selecting previously unselected package liblerc4:arm64. 496s Preparing to unpack .../022-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 496s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 496s Selecting previously unselected package libsharpyuv0:arm64. 496s Preparing to unpack .../023-libsharpyuv0_1.3.2-0.4_arm64.deb ... 496s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 497s Selecting previously unselected package libwebp7:arm64. 497s Preparing to unpack .../024-libwebp7_1.3.2-0.4_arm64.deb ... 497s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 497s Selecting previously unselected package libtiff6:arm64. 497s Preparing to unpack .../025-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 497s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 497s Selecting previously unselected package libxft2:arm64. 497s Preparing to unpack .../026-libxft2_2.3.6-1_arm64.deb ... 497s Unpacking libxft2:arm64 (2.3.6-1) ... 497s Selecting previously unselected package x11-common. 497s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu2_all.deb ... 497s Unpacking x11-common (1:7.7+23ubuntu2) ... 497s Selecting previously unselected package libxss1:arm64. 497s Preparing to unpack .../028-libxss1_1%3a1.2.3-1build2_arm64.deb ... 497s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 497s Selecting previously unselected package libtk8.6:arm64. 497s Preparing to unpack .../029-libtk8.6_8.6.13-2_arm64.deb ... 497s Unpacking libtk8.6:arm64 (8.6.13-2) ... 497s Selecting previously unselected package libice6:arm64. 497s Preparing to unpack .../030-libice6_2%3a1.0.10-1build2_arm64.deb ... 497s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 497s Selecting previously unselected package libsm6:arm64. 497s Preparing to unpack .../031-libsm6_2%3a1.2.3-1build2_arm64.deb ... 497s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 497s Selecting previously unselected package libxt6:arm64. 497s Preparing to unpack .../032-libxt6_1%3a1.2.1-1.1_arm64.deb ... 497s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 497s Selecting previously unselected package r-base-core. 497s Preparing to unpack .../033-r-base-core_4.3.2-1build1_arm64.deb ... 498s Unpacking r-base-core (4.3.2-1build1) ... 499s Selecting previously unselected package r-cran-mass. 499s Preparing to unpack .../034-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 499s Unpacking r-cran-mass (7.3-60.0.1-1) ... 499s Selecting previously unselected package r-cran-class. 499s Preparing to unpack .../035-r-cran-class_7.3-22-2_arm64.deb ... 499s Unpacking r-cran-class (7.3-22-2) ... 499s Selecting previously unselected package r-cran-proxy. 499s Preparing to unpack .../036-r-cran-proxy_0.4-27-1_arm64.deb ... 499s Unpacking r-cran-proxy (0.4-27-1) ... 499s Selecting previously unselected package r-cran-e1071. 499s Preparing to unpack .../037-r-cran-e1071_1.7-14-1_arm64.deb ... 499s Unpacking r-cran-e1071 (1.7-14-1) ... 500s Selecting previously unselected package r-cran-kernsmooth. 500s Preparing to unpack .../038-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 500s Unpacking r-cran-kernsmooth (2.23-22-1) ... 500s Selecting previously unselected package r-cran-classint. 500s Preparing to unpack .../039-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 500s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 500s Selecting previously unselected package r-cran-dbi. 500s Preparing to unpack .../040-r-cran-dbi_1.2.2-1_all.deb ... 500s Unpacking r-cran-dbi (1.2.2-1) ... 500s Selecting previously unselected package r-cran-magrittr. 500s Preparing to unpack .../041-r-cran-magrittr_2.0.3-1_arm64.deb ... 500s Unpacking r-cran-magrittr (2.0.3-1) ... 500s Selecting previously unselected package r-cran-littler. 500s Preparing to unpack .../042-r-cran-littler_0.3.19-1_arm64.deb ... 500s Unpacking r-cran-littler (0.3.19-1) ... 500s Selecting previously unselected package littler. 500s Preparing to unpack .../043-littler_0.3.19-1_all.deb ... 500s Unpacking littler (0.3.19-1) ... 500s Selecting previously unselected package r-cran-pkgkitten. 500s Preparing to unpack .../044-r-cran-pkgkitten_0.2.3-1_all.deb ... 500s Unpacking r-cran-pkgkitten (0.2.3-1) ... 500s Selecting previously unselected package r-cran-rcpp. 500s Preparing to unpack .../045-r-cran-rcpp_1.0.12-1_arm64.deb ... 500s Unpacking r-cran-rcpp (1.0.12-1) ... 501s Selecting previously unselected package r-cran-wk. 501s Preparing to unpack .../046-r-cran-wk_0.9.1-1_arm64.deb ... 501s Unpacking r-cran-wk (0.9.1-1) ... 501s Selecting previously unselected package r-cran-s2. 501s Preparing to unpack .../047-r-cran-s2_1.1.6-1_arm64.deb ... 501s Unpacking r-cran-s2 (1.1.6-1) ... 501s Selecting previously unselected package libudunits2-data. 502s Preparing to unpack .../048-libudunits2-data_2.2.28-7_all.deb ... 502s Unpacking libudunits2-data (2.2.28-7) ... 502s Selecting previously unselected package libudunits2-0. 502s Preparing to unpack .../049-libudunits2-0_2.2.28-7_arm64.deb ... 502s Unpacking libudunits2-0 (2.2.28-7) ... 502s Selecting previously unselected package r-cran-units. 502s Preparing to unpack .../050-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 502s Unpacking r-cran-units (0.8-5+dfsg-1) ... 502s Selecting previously unselected package gdal-data. 502s Preparing to unpack .../051-gdal-data_3.8.4+dfsg-3build1_all.deb ... 502s Unpacking gdal-data (3.8.4+dfsg-3build1) ... 502s Selecting previously unselected package gdal-plugins:arm64. 502s Preparing to unpack .../052-gdal-plugins_3.8.4+dfsg-3build1_arm64.deb ... 502s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-3build1) ... 502s Selecting previously unselected package libaec0:arm64. 502s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 502s Unpacking libaec0:arm64 (1.1.2-1) ... 502s Selecting previously unselected package libarpack2:arm64. 502s Preparing to unpack .../054-libarpack2_3.9.1-1_arm64.deb ... 502s Unpacking libarpack2:arm64 (3.9.1-1) ... 502s Selecting previously unselected package libsuperlu6:arm64. 502s Preparing to unpack .../055-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 502s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 503s Selecting previously unselected package libarmadillo12. 503s Preparing to unpack .../056-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 503s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 503s Selecting previously unselected package libsnappy1v5:arm64. 503s Preparing to unpack .../057-libsnappy1v5_1.1.10-1_arm64.deb ... 503s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 503s Selecting previously unselected package libblosc1:arm64. 503s Preparing to unpack .../058-libblosc1_1.21.5+ds-1_arm64.deb ... 503s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 503s Selecting previously unselected package libcfitsio10t64:arm64. 503s Preparing to unpack .../059-libcfitsio10t64_4.3.1-1.1_arm64.deb ... 503s Unpacking libcfitsio10t64:arm64 (4.3.1-1.1) ... 503s Selecting previously unselected package libminizip1t64:arm64. 503s Preparing to unpack .../060-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 503s Unpacking libminizip1t64:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 503s Selecting previously unselected package libfreexl1:arm64. 503s Preparing to unpack .../061-libfreexl1_2.0.0-1_arm64.deb ... 503s Unpacking libfreexl1:arm64 (2.0.0-1) ... 503s Selecting previously unselected package libfyba0:arm64. 503s Preparing to unpack .../062-libfyba0_4.1.1-8_arm64.deb ... 503s Unpacking libfyba0:arm64 (4.1.1-8) ... 503s Selecting previously unselected package libgeos3.12.1t64:arm64. 503s Preparing to unpack .../063-libgeos3.12.1t64_3.12.1-3_arm64.deb ... 503s Unpacking libgeos3.12.1t64:arm64 (3.12.1-3) ... 503s Selecting previously unselected package libgeos-c1t64:arm64. 503s Preparing to unpack .../064-libgeos-c1t64_3.12.1-3_arm64.deb ... 503s Unpacking libgeos-c1t64:arm64 (3.12.1-3) ... 503s Selecting previously unselected package proj-data. 503s Preparing to unpack .../065-proj-data_9.4.0-1_all.deb ... 503s Unpacking proj-data (9.4.0-1) ... 504s Selecting previously unselected package libproj25:arm64. 504s Preparing to unpack .../066-libproj25_9.4.0-1_arm64.deb ... 504s Unpacking libproj25:arm64 (9.4.0-1) ... 504s Selecting previously unselected package libgeotiff5:arm64. 504s Preparing to unpack .../067-libgeotiff5_1.7.1-5_arm64.deb ... 504s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 504s Selecting previously unselected package libgif7:arm64. 504s Preparing to unpack .../068-libgif7_5.2.1-2.5_arm64.deb ... 504s Unpacking libgif7:arm64 (5.2.1-2.5) ... 504s Selecting previously unselected package libhdf4-0-alt. 505s Preparing to unpack .../069-libhdf4-0-alt_4.2.16-3_arm64.deb ... 505s Unpacking libhdf4-0-alt (4.2.16-3) ... 505s Selecting previously unselected package libsz2:arm64. 505s Preparing to unpack .../070-libsz2_1.1.2-1_arm64.deb ... 505s Unpacking libsz2:arm64 (1.1.2-1) ... 505s Selecting previously unselected package libhdf5-103-1:arm64. 505s Preparing to unpack .../071-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 505s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 505s Selecting previously unselected package libdav1d7:arm64. 505s Preparing to unpack .../072-libdav1d7_1.4.0-1_arm64.deb ... 505s Unpacking libdav1d7:arm64 (1.4.0-1) ... 505s Selecting previously unselected package libheif-plugin-dav1d:arm64. 505s Preparing to unpack .../073-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 505s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 505s Selecting previously unselected package libde265-0:arm64. 505s Preparing to unpack .../074-libde265-0_1.0.15-1_arm64.deb ... 505s Unpacking libde265-0:arm64 (1.0.15-1) ... 505s Selecting previously unselected package libheif-plugin-libde265:arm64. 505s Preparing to unpack .../075-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 505s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 505s Selecting previously unselected package libheif1:arm64. 505s Preparing to unpack .../076-libheif1_1.17.6-1ubuntu1_arm64.deb ... 505s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 505s Selecting previously unselected package liburiparser1:arm64. 505s Preparing to unpack .../077-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 505s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 505s Selecting previously unselected package libkmlbase1t64:arm64. 506s Preparing to unpack .../078-libkmlbase1t64_1.3.0-12_arm64.deb ... 506s Unpacking libkmlbase1t64:arm64 (1.3.0-12) ... 506s Selecting previously unselected package libkmldom1t64:arm64. 506s Preparing to unpack .../079-libkmldom1t64_1.3.0-12_arm64.deb ... 506s Unpacking libkmldom1t64:arm64 (1.3.0-12) ... 506s Selecting previously unselected package libkmlengine1t64:arm64. 506s Preparing to unpack .../080-libkmlengine1t64_1.3.0-12_arm64.deb ... 506s Unpacking libkmlengine1t64:arm64 (1.3.0-12) ... 506s Selecting previously unselected package mysql-common. 506s Preparing to unpack .../081-mysql-common_5.8+1.1.0_all.deb ... 506s Unpacking mysql-common (5.8+1.1.0) ... 506s Selecting previously unselected package libmysqlclient21:arm64. 506s Preparing to unpack .../082-libmysqlclient21_8.0.36-1_arm64.deb ... 506s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 506s Selecting previously unselected package libhdf5-hl-100:arm64. 506s Preparing to unpack .../083-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 506s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 506s Selecting previously unselected package libnetcdf19t64:arm64. 506s Preparing to unpack .../084-libnetcdf19t64_1%3a4.9.2-5ubuntu1_arm64.deb ... 506s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu1) ... 507s Selecting previously unselected package libltdl7:arm64. 507s Preparing to unpack .../085-libltdl7_2.4.7-7_arm64.deb ... 507s Unpacking libltdl7:arm64 (2.4.7-7) ... 507s Selecting previously unselected package libodbc2:arm64. 507s Preparing to unpack .../086-libodbc2_2.3.12-1_arm64.deb ... 507s Unpacking libodbc2:arm64 (2.3.12-1) ... 507s Selecting previously unselected package unixodbc-common. 507s Preparing to unpack .../087-unixodbc-common_2.3.12-1_all.deb ... 507s Unpacking unixodbc-common (2.3.12-1) ... 507s Selecting previously unselected package libodbcinst2:arm64. 507s Preparing to unpack .../088-libodbcinst2_2.3.12-1_arm64.deb ... 507s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 507s Selecting previously unselected package libogdi4.1. 507s Preparing to unpack .../089-libogdi4.1_4.1.1+ds-1_arm64.deb ... 507s Unpacking libogdi4.1 (4.1.1+ds-1) ... 507s Selecting previously unselected package libopenjp2-7:arm64. 507s Preparing to unpack .../090-libopenjp2-7_2.5.0-2_arm64.deb ... 507s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 507s Selecting previously unselected package liblcms2-2:arm64. 507s Preparing to unpack .../091-liblcms2-2_2.14-2_arm64.deb ... 507s Unpacking liblcms2-2:arm64 (2.14-2) ... 507s Selecting previously unselected package libpoppler134:arm64. 507s Preparing to unpack .../092-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 507s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 507s Selecting previously unselected package libpq5:arm64. 507s Preparing to unpack .../093-libpq5_16.2-1_arm64.deb ... 507s Unpacking libpq5:arm64 (16.2-1) ... 507s Selecting previously unselected package libqhull-r8.0:arm64. 508s Preparing to unpack .../094-libqhull-r8.0_2020.2-6_arm64.deb ... 508s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 508s Selecting previously unselected package librttopo1:arm64. 508s Preparing to unpack .../095-librttopo1_1.1.0-3_arm64.deb ... 508s Unpacking librttopo1:arm64 (1.1.0-3) ... 508s Selecting previously unselected package libspatialite8t64:arm64. 508s Preparing to unpack .../096-libspatialite8t64_5.1.0-3_arm64.deb ... 508s Unpacking libspatialite8t64:arm64 (5.1.0-3) ... 508s Selecting previously unselected package libxerces-c3.2t64:arm64. 508s Preparing to unpack .../097-libxerces-c3.2t64_3.2.4+debian-1.2_arm64.deb ... 508s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.2) ... 508s Selecting previously unselected package libgdal34t64:arm64. 508s Preparing to unpack .../098-libgdal34t64_3.8.4+dfsg-3build1_arm64.deb ... 508s Unpacking libgdal34t64:arm64 (3.8.4+dfsg-3build1) ... 509s Selecting previously unselected package r-cran-sf. 509s Preparing to unpack .../099-r-cran-sf_1.0-15+dfsg-1build1_arm64.deb ... 509s Unpacking r-cran-sf (1.0-15+dfsg-1build1) ... 509s Selecting previously unselected package r-cran-rlang. 509s Preparing to unpack .../100-r-cran-rlang_1.1.3-1_arm64.deb ... 509s Unpacking r-cran-rlang (1.1.3-1) ... 509s Selecting previously unselected package r-cran-cli. 509s Preparing to unpack .../101-r-cran-cli_3.6.2-1_arm64.deb ... 509s Unpacking r-cran-cli (3.6.2-1) ... 510s Selecting previously unselected package r-cran-glue. 510s Preparing to unpack .../102-r-cran-glue_1.7.0-1_arm64.deb ... 510s Unpacking r-cran-glue (1.7.0-1) ... 510s Selecting previously unselected package r-cran-lifecycle. 510s Preparing to unpack .../103-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 510s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 510s Selecting previously unselected package r-cran-vctrs. 510s Preparing to unpack .../104-r-cran-vctrs_0.6.5-1_arm64.deb ... 510s Unpacking r-cran-vctrs (0.6.5-1) ... 510s Selecting previously unselected package r-cran-blob. 510s Preparing to unpack .../105-r-cran-blob_1.2.4-1_all.deb ... 510s Unpacking r-cran-blob (1.2.4-1) ... 510s Selecting previously unselected package r-cran-digest. 510s Preparing to unpack .../106-r-cran-digest_0.6.34-1_arm64.deb ... 510s Unpacking r-cran-digest (0.6.34-1) ... 510s Selecting previously unselected package r-cran-jsonlite. 510s Preparing to unpack .../107-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 510s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 511s Selecting previously unselected package r-cran-lazyeval. 511s Preparing to unpack .../108-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 511s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 511s Selecting previously unselected package r-cran-rex. 511s Preparing to unpack .../109-r-cran-rex_1.2.1-1_all.deb ... 511s Unpacking r-cran-rex (1.2.1-1) ... 511s Selecting previously unselected package r-cran-curl. 511s Preparing to unpack .../110-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 511s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 511s Selecting previously unselected package r-cran-mime. 511s Preparing to unpack .../111-r-cran-mime_0.12-1_arm64.deb ... 511s Unpacking r-cran-mime (0.12-1) ... 511s Selecting previously unselected package r-cran-sys. 511s Preparing to unpack .../112-r-cran-sys_3.4.2-1_arm64.deb ... 511s Unpacking r-cran-sys (3.4.2-1) ... 511s Selecting previously unselected package r-cran-askpass. 511s Preparing to unpack .../113-r-cran-askpass_1.2.0-1_arm64.deb ... 511s Unpacking r-cran-askpass (1.2.0-1) ... 511s Selecting previously unselected package r-cran-openssl. 511s Preparing to unpack .../114-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 511s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 511s Selecting previously unselected package r-cran-r6. 512s Preparing to unpack .../115-r-cran-r6_2.5.1-1_all.deb ... 512s Unpacking r-cran-r6 (2.5.1-1) ... 512s Selecting previously unselected package r-cran-httr. 512s Preparing to unpack .../116-r-cran-httr_1.4.7+dfsg-1_all.deb ... 512s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 512s Selecting previously unselected package r-cran-crayon. 512s Preparing to unpack .../117-r-cran-crayon_1.5.2-1_all.deb ... 512s Unpacking r-cran-crayon (1.5.2-1) ... 512s Selecting previously unselected package r-cran-withr. 512s Preparing to unpack .../118-r-cran-withr_2.5.0-1_all.deb ... 512s Unpacking r-cran-withr (2.5.0-1) ... 512s Selecting previously unselected package r-cran-yaml. 512s Preparing to unpack .../119-r-cran-yaml_2.3.8-1_arm64.deb ... 512s Unpacking r-cran-yaml (2.3.8-1) ... 512s Selecting previously unselected package fonts-glyphicons-halflings. 512s Preparing to unpack .../120-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 512s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 512s Selecting previously unselected package libjs-bootstrap. 512s Preparing to unpack .../121-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 512s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 512s Selecting previously unselected package node-html5shiv. 512s Preparing to unpack .../122-node-html5shiv_3.7.3+dfsg-5_all.deb ... 512s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 513s Selecting previously unselected package r-cran-covr. 513s Preparing to unpack .../123-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 513s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 513s Selecting previously unselected package r-cran-generics. 513s Preparing to unpack .../124-r-cran-generics_0.1.3-1_all.deb ... 513s Unpacking r-cran-generics (0.1.3-1) ... 513s Selecting previously unselected package r-cran-fansi. 513s Preparing to unpack .../125-r-cran-fansi_1.0.5-1_arm64.deb ... 513s Unpacking r-cran-fansi (1.0.5-1) ... 513s Selecting previously unselected package r-cran-utf8. 513s Preparing to unpack .../126-r-cran-utf8_1.2.4-1_arm64.deb ... 513s Unpacking r-cran-utf8 (1.2.4-1) ... 513s Selecting previously unselected package r-cran-pillar. 513s Preparing to unpack .../127-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 513s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 513s Selecting previously unselected package r-cran-pkgconfig. 513s Preparing to unpack .../128-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 513s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 514s Selecting previously unselected package r-cran-tibble. 514s Preparing to unpack .../129-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 514s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 514s Selecting previously unselected package r-cran-tidyselect. 514s Preparing to unpack .../130-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 514s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 514s Selecting previously unselected package r-cran-dplyr. 514s Preparing to unpack .../131-r-cran-dplyr_1.1.4-1_arm64.deb ... 514s Unpacking r-cran-dplyr (1.1.4-1) ... 514s Selecting previously unselected package r-cran-gtable. 514s Preparing to unpack .../132-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 514s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 514s Selecting previously unselected package r-cran-isoband. 514s Preparing to unpack .../133-r-cran-isoband_0.2.7-1_arm64.deb ... 514s Unpacking r-cran-isoband (0.2.7-1) ... 514s Selecting previously unselected package r-cran-lattice. 514s Preparing to unpack .../134-r-cran-lattice_0.22-5-1_arm64.deb ... 514s Unpacking r-cran-lattice (0.22-5-1) ... 515s Selecting previously unselected package r-cran-nlme. 515s Preparing to unpack .../135-r-cran-nlme_3.1.164-1_arm64.deb ... 515s Unpacking r-cran-nlme (3.1.164-1) ... 515s Selecting previously unselected package r-cran-matrix. 515s Preparing to unpack .../136-r-cran-matrix_1.6-5-1_arm64.deb ... 515s Unpacking r-cran-matrix (1.6-5-1) ... 515s Selecting previously unselected package r-cran-mgcv. 515s Preparing to unpack .../137-r-cran-mgcv_1.9-1-1_arm64.deb ... 515s Unpacking r-cran-mgcv (1.9-1-1) ... 515s Selecting previously unselected package r-cran-farver. 515s Preparing to unpack .../138-r-cran-farver_2.1.1-1_arm64.deb ... 515s Unpacking r-cran-farver (2.1.1-1) ... 516s Selecting previously unselected package r-cran-labeling. 516s Preparing to unpack .../139-r-cran-labeling_0.4.3-1_all.deb ... 516s Unpacking r-cran-labeling (0.4.3-1) ... 516s Selecting previously unselected package r-cran-colorspace. 516s Preparing to unpack .../140-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 516s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 516s Selecting previously unselected package r-cran-munsell. 516s Preparing to unpack .../141-r-cran-munsell_0.5.0-2build1_all.deb ... 516s Unpacking r-cran-munsell (0.5.0-2build1) ... 516s Selecting previously unselected package r-cran-rcolorbrewer. 516s Preparing to unpack .../142-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 516s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 516s Selecting previously unselected package r-cran-viridislite. 516s Preparing to unpack .../143-r-cran-viridislite_0.4.2-2_all.deb ... 516s Unpacking r-cran-viridislite (0.4.2-2) ... 516s Selecting previously unselected package r-cran-scales. 516s Preparing to unpack .../144-r-cran-scales_1.3.0-1_all.deb ... 516s Unpacking r-cran-scales (1.3.0-1) ... 517s Selecting previously unselected package r-cran-ggplot2. 517s Preparing to unpack .../145-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 517s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 517s Selecting previously unselected package r-cran-evaluate. 517s Preparing to unpack .../146-r-cran-evaluate_0.23-1_all.deb ... 517s Unpacking r-cran-evaluate (0.23-1) ... 517s Selecting previously unselected package r-cran-xfun. 517s Preparing to unpack .../147-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 517s Unpacking r-cran-xfun (0.41+dfsg-1) ... 517s Selecting previously unselected package libjs-highlight.js. 517s Preparing to unpack .../148-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 517s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 518s Selecting previously unselected package libjs-jquery. 518s Preparing to unpack .../149-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 518s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 518s Selecting previously unselected package r-cran-highr. 518s Preparing to unpack .../150-r-cran-highr_0.10+dfsg-1_all.deb ... 518s Unpacking r-cran-highr (0.10+dfsg-1) ... 518s Selecting previously unselected package fonts-mathjax. 518s Preparing to unpack .../151-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 518s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 518s Selecting previously unselected package libjs-mathjax. 518s Preparing to unpack .../152-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 518s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 522s Selecting previously unselected package libjs-jquery-datatables. 522s Preparing to unpack .../153-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 522s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 522s Selecting previously unselected package node-normalize.css. 522s Preparing to unpack .../154-node-normalize.css_8.0.1-5_all.deb ... 522s Unpacking node-normalize.css (8.0.1-5) ... 523s Selecting previously unselected package r-cran-knitr. 523s Preparing to unpack .../155-r-cran-knitr_1.45+dfsg-1_all.deb ... 523s Unpacking r-cran-knitr (1.45+dfsg-1) ... 523s Selecting previously unselected package r-cran-lwgeom. 523s Preparing to unpack .../156-r-cran-lwgeom_0.2-13-3_arm64.deb ... 523s Unpacking r-cran-lwgeom (0.2-13-3) ... 523s Selecting previously unselected package r-cran-maps. 523s Preparing to unpack .../157-r-cran-maps_3.4.2-1_arm64.deb ... 523s Unpacking r-cran-maps (3.4.2-1) ... 523s Selecting previously unselected package r-cran-pbapply. 523s Preparing to unpack .../158-r-cran-pbapply_1.7-2-1_all.deb ... 523s Unpacking r-cran-pbapply (1.7-2-1) ... 523s Selecting previously unselected package r-cran-sp. 523s Preparing to unpack .../159-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 523s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 524s Selecting previously unselected package r-cran-terra. 524s Preparing to unpack .../160-r-cran-terra_1.7-65-1_arm64.deb ... 524s Unpacking r-cran-terra (1.7-65-1) ... 524s Selecting previously unselected package r-cran-raster. 524s Preparing to unpack .../161-r-cran-raster_3.6-26-1_arm64.deb ... 524s Unpacking r-cran-raster (3.6-26-1) ... 524s Selecting previously unselected package r-cran-base64enc. 524s Preparing to unpack .../162-r-cran-base64enc_0.1-3-3_arm64.deb ... 524s Unpacking r-cran-base64enc (0.1-3-3) ... 524s Selecting previously unselected package r-cran-fastmap. 524s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 524s Unpacking r-cran-fastmap (1.1.1-1) ... 524s Selecting previously unselected package r-cran-cachem. 524s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 524s Unpacking r-cran-cachem (1.0.8-1) ... 524s Selecting previously unselected package r-cran-ellipsis. 524s Preparing to unpack .../165-r-cran-ellipsis_0.3.2-2_arm64.deb ... 524s Unpacking r-cran-ellipsis (0.3.2-2) ... 525s Selecting previously unselected package r-cran-htmltools. 525s Preparing to unpack .../166-r-cran-htmltools_0.5.7-1_arm64.deb ... 525s Unpacking r-cran-htmltools (0.5.7-1) ... 525s Selecting previously unselected package r-cran-jquerylib. 525s Preparing to unpack .../167-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 525s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 525s Selecting previously unselected package r-cran-memoise. 525s Preparing to unpack .../168-r-cran-memoise_2.0.1-1_all.deb ... 525s Unpacking r-cran-memoise (2.0.1-1) ... 525s Selecting previously unselected package r-cran-fs. 525s Preparing to unpack .../169-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 525s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 525s Selecting previously unselected package r-cran-rappdirs. 525s Preparing to unpack .../170-r-cran-rappdirs_0.3.3-1_arm64.deb ... 525s Unpacking r-cran-rappdirs (0.3.3-1) ... 525s Selecting previously unselected package r-cran-sass. 525s Preparing to unpack .../171-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 525s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 525s Selecting previously unselected package node-bootstrap-sass. 525s Preparing to unpack .../172-node-bootstrap-sass_3.4.3-2_all.deb ... 525s Unpacking node-bootstrap-sass (3.4.3-2) ... 526s Selecting previously unselected package javascript-common. 526s Preparing to unpack .../173-javascript-common_11+nmu1_all.deb ... 526s Unpacking javascript-common (11+nmu1) ... 526s Selecting previously unselected package libjs-popper.js. 526s Preparing to unpack .../174-libjs-popper.js_1.16.1+ds-6_all.deb ... 526s Unpacking libjs-popper.js (1.16.1+ds-6) ... 526s Selecting previously unselected package libjs-bootstrap4. 526s Preparing to unpack .../175-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 526s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 527s Selecting previously unselected package r-cran-bslib. 527s Preparing to unpack .../176-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 527s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 527s Selecting previously unselected package r-cran-fontawesome. 527s Preparing to unpack .../177-r-cran-fontawesome_0.5.2-1_all.deb ... 527s Unpacking r-cran-fontawesome (0.5.2-1) ... 527s Selecting previously unselected package r-cran-stringi. 527s Preparing to unpack .../178-r-cran-stringi_1.8.3-1_arm64.deb ... 527s Unpacking r-cran-stringi (1.8.3-1) ... 528s Selecting previously unselected package r-cran-stringr. 528s Preparing to unpack .../179-r-cran-stringr_1.5.1-1_all.deb ... 528s Unpacking r-cran-stringr (1.5.1-1) ... 528s Selecting previously unselected package r-cran-tinytex. 528s Preparing to unpack .../180-r-cran-tinytex_0.49-1_all.deb ... 528s Unpacking r-cran-tinytex (0.49-1) ... 528s Selecting previously unselected package libjs-jquery-ui. 528s Preparing to unpack .../181-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 528s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 528s Selecting previously unselected package libjs-modernizr. 528s Preparing to unpack .../182-libjs-modernizr_2.6.2+ds1-5_all.deb ... 528s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 528s Selecting previously unselected package libjs-prettify. 528s Preparing to unpack .../183-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 528s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 529s Selecting previously unselected package fonts-font-awesome. 529s Preparing to unpack .../184-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 529s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 529s Selecting previously unselected package pandoc-data. 529s Preparing to unpack .../185-pandoc-data_3.1.3-1_all.deb ... 529s Unpacking pandoc-data (3.1.3-1) ... 529s Selecting previously unselected package liblua5.4-0:arm64. 529s Preparing to unpack .../186-liblua5.4-0_5.4.6-3_arm64.deb ... 529s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 529s Selecting previously unselected package pandoc. 529s Preparing to unpack .../187-pandoc_3.1.3+ds-2_arm64.deb ... 529s Unpacking pandoc (3.1.3+ds-2) ... 533s Selecting previously unselected package r-cran-later. 533s Preparing to unpack .../188-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 533s Unpacking r-cran-later (1.3.2+dfsg-1) ... 533s Selecting previously unselected package r-cran-promises. 533s Preparing to unpack .../189-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 533s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 533s Selecting previously unselected package r-cran-httpuv. 533s Preparing to unpack .../190-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 533s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 533s Selecting previously unselected package r-cran-xtable. 533s Preparing to unpack .../191-r-cran-xtable_1%3a1.8-4-2_all.deb ... 533s Unpacking r-cran-xtable (1:1.8-4-2) ... 533s Selecting previously unselected package r-cran-sourcetools. 533s Preparing to unpack .../192-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 533s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 533s Selecting previously unselected package r-cran-commonmark. 534s Preparing to unpack .../193-r-cran-commonmark_1.9.1-1_arm64.deb ... 534s Unpacking r-cran-commonmark (1.9.1-1) ... 534s Selecting previously unselected package libjs-json. 534s Preparing to unpack .../194-libjs-json_0~20221030+~1.0.8-1_all.deb ... 534s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 534s Selecting previously unselected package libjs-es5-shim. 534s Preparing to unpack .../195-libjs-es5-shim_4.6.7-2_all.deb ... 534s Unpacking libjs-es5-shim (4.6.7-2) ... 534s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 534s Preparing to unpack .../196-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 534s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 534s Selecting previously unselected package libjs-sifter.js. 534s Preparing to unpack .../197-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 534s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 534s Selecting previously unselected package libjs-microplugin.js. 534s Preparing to unpack .../198-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 534s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 534s Selecting previously unselected package libjs-jquery-selectize.js. 534s Preparing to unpack .../199-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 534s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 534s Selecting previously unselected package libjs-d3. 534s Preparing to unpack .../200-libjs-d3_3.5.17-4_all.deb ... 534s Unpacking libjs-d3 (3.5.17-4) ... 534s Selecting previously unselected package r-cran-shiny. 534s Preparing to unpack .../201-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 534s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 535s Selecting previously unselected package r-cran-rmarkdown. 535s Preparing to unpack .../202-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 535s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 535s Selecting previously unselected package r-cran-rpostgresql. 535s Preparing to unpack .../203-r-cran-rpostgresql_0.7-6+dfsg-1_arm64.deb ... 535s Unpacking r-cran-rpostgresql (0.7-6+dfsg-1) ... 535s Selecting previously unselected package r-cran-bit. 535s Preparing to unpack .../204-r-cran-bit_4.0.5-1_arm64.deb ... 535s Unpacking r-cran-bit (4.0.5-1) ... 535s Selecting previously unselected package r-cran-bit64. 536s Preparing to unpack .../205-r-cran-bit64_4.0.5-1_arm64.deb ... 536s Unpacking r-cran-bit64 (4.0.5-1) ... 536s Selecting previously unselected package r-cran-plogr. 536s Preparing to unpack .../206-r-cran-plogr_0.2.0-3build1_all.deb ... 536s Unpacking r-cran-plogr (0.2.0-3build1) ... 536s Selecting previously unselected package r-cran-cpp11. 536s Preparing to unpack .../207-r-cran-cpp11_0.4.7-1_all.deb ... 536s Unpacking r-cran-cpp11 (0.4.7-1) ... 536s Selecting previously unselected package r-cran-rsqlite. 536s Preparing to unpack .../208-r-cran-rsqlite_2.3.4-1_arm64.deb ... 536s Unpacking r-cran-rsqlite (2.3.4-1) ... 536s Selecting previously unselected package r-cran-spatstat.utils. 536s Preparing to unpack .../209-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 536s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 536s Selecting previously unselected package r-cran-spatstat.data. 536s Preparing to unpack .../210-r-cran-spatstat.data_3.0-4-1_all.deb ... 536s Unpacking r-cran-spatstat.data (3.0-4-1) ... 537s Selecting previously unselected package r-cran-deldir. 537s Preparing to unpack .../211-r-cran-deldir_2.0-4-1_arm64.deb ... 537s Unpacking r-cran-deldir (2.0-4-1) ... 537s Selecting previously unselected package r-cran-polyclip. 537s Preparing to unpack .../212-r-cran-polyclip_1.10-6-1_arm64.deb ... 537s Unpacking r-cran-polyclip (1.10-6-1) ... 537s Selecting previously unselected package r-cran-spatstat.geom. 537s Preparing to unpack .../213-r-cran-spatstat.geom_3.2-8-1_arm64.deb ... 537s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 537s Selecting previously unselected package r-cran-spatstat.random. 537s Preparing to unpack .../214-r-cran-spatstat.random_3.2-2-1_arm64.deb ... 537s Unpacking r-cran-spatstat.random (3.2-2-1) ... 537s Selecting previously unselected package r-cran-abind. 537s Preparing to unpack .../215-r-cran-abind_1.4-5-2_all.deb ... 537s Unpacking r-cran-abind (1.4-5-2) ... 537s Selecting previously unselected package r-cran-tensor. 537s Preparing to unpack .../216-r-cran-tensor_1.5-4_all.deb ... 537s Unpacking r-cran-tensor (1.5-4) ... 537s Selecting previously unselected package r-cran-spatstat.sparse. 537s Preparing to unpack .../217-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 537s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 538s Selecting previously unselected package r-cran-goftest. 538s Preparing to unpack .../218-r-cran-goftest_1.2-3-1_arm64.deb ... 538s Unpacking r-cran-goftest (1.2-3-1) ... 538s Selecting previously unselected package r-cran-spatstat.explore. 538s Preparing to unpack .../219-r-cran-spatstat.explore_3.2-5-1_arm64.deb ... 538s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 538s Selecting previously unselected package r-cran-survival. 538s Preparing to unpack .../220-r-cran-survival_3.5-8-1_arm64.deb ... 538s Unpacking r-cran-survival (3.5-8-1) ... 538s Selecting previously unselected package r-cran-rpart. 538s Preparing to unpack .../221-r-cran-rpart_4.1.23-1_arm64.deb ... 538s Unpacking r-cran-rpart (4.1.23-1) ... 538s Selecting previously unselected package r-cran-spatstat.model. 538s Preparing to unpack .../222-r-cran-spatstat.model_3.2-8-1_arm64.deb ... 538s Unpacking r-cran-spatstat.model (3.2-8-1) ... 539s Selecting previously unselected package r-cran-spatstat.linnet. 539s Preparing to unpack .../223-r-cran-spatstat.linnet_3.1-3-1_arm64.deb ... 539s Unpacking r-cran-spatstat.linnet (3.1-3-1) ... 539s Selecting previously unselected package r-cran-spatstat. 539s Preparing to unpack .../224-r-cran-spatstat_3.0-7-1_arm64.deb ... 539s Unpacking r-cran-spatstat (3.0-7-1) ... 539s Selecting previously unselected package r-cran-stars. 539s Preparing to unpack .../225-r-cran-stars_0.6-4-1_all.deb ... 539s Unpacking r-cran-stars (0.6-4-1) ... 539s Selecting previously unselected package r-cran-brio. 539s Preparing to unpack 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(2.25+dfsg-3) ... 549s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 549s Setting up r-cran-spatstat (3.0-7-1) ... 549s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 549s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 549s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 549s Setting up libgdal34t64:arm64 (3.8.4+dfsg-3build1) ... 549s Setting up r-cran-terra (1.7-65-1) ... 549s Setting up r-cran-sf (1.0-15+dfsg-1build1) ... 549s Setting up r-cran-stars (0.6-4-1) ... 549s Setting up r-cran-raster (3.6-26-1) ... 549s Setting up r-cran-lwgeom (0.2-13-3) ... 549s Setting up autopkgtest-satdep (0) ... 549s Processing triggers for libc-bin (2.39-0ubuntu2) ... 549s Processing triggers for man-db (2.12.0-3) ... 551s Processing triggers for install-info (7.1-3) ... 585s (Reading database ... 96737 files and directories currently installed.) 585s Removing autopkgtest-satdep (0) ... 586s autopkgtest [03:52:31]: test run-unit-test: [----------------------- 586s BEGIN TEST aggregate.R 587s 587s R version 4.3.2 (2023-10-31) -- "Eye Holes" 587s Copyright (C) 2023 The R Foundation for Statistical Computing 587s Platform: aarch64-unknown-linux-gnu (64-bit) 587s 587s R is free software and comes with ABSOLUTELY NO WARRANTY. 587s You are welcome to redistribute it under certain conditions. 587s Type 'license()' or 'licence()' for distribution details. 587s 587s R is a collaborative project with many contributors. 587s Type 'contributors()' for more information and 587s 'citation()' on how to cite R or R packages in publications. 587s 587s Type 'demo()' for some demos, 'help()' for on-line help, or 587s 'help.start()' for an HTML browser interface to help. 587s Type 'q()' to quit R. 587s 587s > library(sf) 590s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE 590s Warning message: 590s package 'sf' was built under R version 4.3.3 590s > # aggregate 590s > pl1 = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,0)))) 590s > pl2 = st_polygon(list(rbind(c(0,0),c(1,1),c(0,1),c(0,0)))) 590s > s = st_sf(a = 1:2, geom = st_sfc(pl1, pl2)) 590s > (a = aggregate(s, list(c(1,1)), mean, do_union = FALSE)) 590s Simple feature collection with 1 feature and 2 fields 590s Attribute-geometry relationships: aggregate (1), identity (1) 590s Geometry type: MULTIPOLYGON 590s Dimension: XY 590s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 590s CRS: NA 590s Group.1 a geometry 590s 1 1 1.5 MULTIPOLYGON (((0 0, 1 0, 1... 590s > (a = aggregate(s, list(c(1,1)), mean, do_union = TRUE)) 590s Simple feature collection with 1 feature and 2 fields 590s Attribute-geometry relationships: aggregate (1), identity (1) 590s Geometry type: POLYGON 590s Dimension: XY 590s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 590s CRS: NA 590s Group.1 a geometry 590s 1 1 1.5 POLYGON ((1 0, 0 0, 0 1, 1 ... 590s > # expect_warning(st_cast(a, "POINT")) 590s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 590s + demo(meuse_sf, echo = FALSE, ask = FALSE) 590s + a = aggregate(meuse_sf, list(meuse_sf$soil), mean) 590s + print(attributes(a)$agr) 590s + a = aggregate(meuse_sf, list(soil = meuse_sf$soil), mean) 590s + print(attributes(a)$agr) 590s + a = aggregate(meuse_sf, list(meuse_sf$soil, meuse_sf$ffreq), mean) 590s + print(attributes(a)$agr) 590s + a = aggregate(meuse_sf, list(soil = meuse_sf$soil, ff = meuse_sf$ffreq), mean) 590s + print(attributes(a)$agr) 590s + } 591s Group.1 cadmium copper lead zinc elev dist om 591s identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 591s ffreq soil lime landuse dist.m 591s aggregate aggregate aggregate aggregate aggregate 591s Levels: constant aggregate identity 591s soil cadmium copper lead zinc elev dist om 591s identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 591s ffreq soil.1 lime landuse dist.m 591s aggregate aggregate aggregate aggregate aggregate 591s Levels: constant aggregate identity 591s Group.1 Group.2 cadmium copper lead zinc elev dist 591s identity identity aggregate aggregate aggregate aggregate aggregate aggregate 591s om ffreq soil lime landuse dist.m 591s aggregate aggregate aggregate aggregate aggregate aggregate 591s Levels: constant aggregate identity 591s soil ff cadmium copper lead zinc elev dist 591s identity identity aggregate aggregate aggregate aggregate aggregate aggregate 591s om ffreq soil.1 lime landuse dist.m 591s aggregate aggregate aggregate aggregate aggregate aggregate 591s Levels: constant aggregate identity 591s > 591s > # aggregate by sf/sfc 591s > a = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) * 2 591s > b = a + 1 591s There were 50 or more warnings (use warnings() to see the first 50) 591s > p = st_sfc(st_point(c(0.1,0.1)), st_point(c(1.5,1.5)), st_point(c(2.9,2.9))) 591s > x = st_sf(count = 1:3, geom = p) 591s > aggregate(x, st_sfc(a,b), mean) 591s Simple feature collection with 2 features and 1 field 591s Geometry type: POLYGON 591s Dimension: XY 591s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 3 591s CRS: NA 591s count geometry 591s 1 1.5 POLYGON ((0 0, 2 0, 2 2, 0 ... 591s 2 2.5 POLYGON ((1 1, 3 1, 3 3, 1 ... 591s > aggregate(x, st_sf(st_sfc(a,b)), mean) 591s Simple feature collection with 2 features and 1 field 591s Geometry type: POLYGON 591s Dimension: XY 591s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 3 591s CRS: NA 591s count geometry 591s 1 1.5 POLYGON ((0 0, 2 0, 2 2, 0 ... 591s 2 2.5 POLYGON ((1 1, 3 1, 3 3, 1 ... 591s > aggregate(x, st_sf(st_sfc(a,b,b+10)), mean) 591s Simple feature collection with 3 features and 1 field 591s Geometry type: POLYGON 591s Dimension: XY 591s Bounding box: xmin: 0 ymin: 0 xmax: 13 ymax: 13 591s CRS: NA 591s count geometry 591s 1 1.5 POLYGON ((0 0, 2 0, 2 2, 0 ... 591s 2 2.5 POLYGON ((1 1, 3 1, 3 3, 1 ... 591s 3 NA POLYGON ((11 11, 13 11, 13 ... 591s > 591s BEGIN TEST cast.R 591s 591s R version 4.3.2 (2023-10-31) -- "Eye Holes" 591s Copyright (C) 2023 The R Foundation for Statistical Computing 591s Platform: aarch64-unknown-linux-gnu (64-bit) 591s 591s R is free software and comes with ABSOLUTELY NO WARRANTY. 591s You are welcome to redistribute it under certain conditions. 591s Type 'license()' or 'licence()' for distribution details. 591s 591s R is a collaborative project with many contributors. 591s Type 'contributors()' for more information and 591s 'citation()' on how to cite R or R packages in publications. 591s 591s Type 'demo()' for some demos, 'help()' for on-line help, or 591s 'help.start()' for an HTML browser interface to help. 591s Type 'q()' to quit R. 591s 592s > suppressPackageStartupMessages(library(sf)) 595s Warning message: 595s > library(testthat) 595s package 'sf' was built under R version 4.3.3 595s > # "vertical" conversions: 595s > # column 1: 595s > mp = st_sfc(st_multipoint(matrix(0:3,,2)), st_multipoint(matrix(10:15,,2))) 595s > (ls = st_cast(mp, "LINESTRING")) 595s Geometry set for 2 features 595s Geometry type: LINESTRING 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 595s CRS: NA 595s > st_cast(ls, "MULTIPOINT") 595s Geometry set for 2 features 595s Geometry type: MULTIPOINT 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 595s CRS: NA 595s > 595s > # column 2: 595s > mls = st_sfc(st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 595s + rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 595s + st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1))))) 595s > (pol = st_cast(mls, "POLYGON")) 595s Geometry set for 2 features 595s Geometry type: POLYGON 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 595s CRS: NA 595s > st_cast(pol, "MULTILINESTRING") 595s Geometry set for 2 features 595s Geometry type: MULTILINESTRING 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 595s CRS: NA 595s > 595s > # "horizontal" conversions: 595s > 595s > (pt = st_cast(mp, "POINT")) 595s Geometry set for 5 features 595s Geometry type: POINT 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 595s LINESTRING (0 2, 1 3) 595s LINESTRING (10 13, 11 14, 12 15) 595s MULTIPOINT ((0 2), (1 3)) 595s MULTIPOINT ((10 13), (11 14), (12 15)) 595s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5... 595s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0)) 595s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10, 0 0),... 595s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1, 0 0)) 595s CRS: NA 595s POINT (0 2) 595s POINT (1 3) 595s POINT (10 13) 595s POINT (11 14) 595s POINT (12 15) 595s > (i = attr(pt, "ids")) 595s [1] 2 3 595s > (xx = st_cast(pt, "MULTIPOINT", rep(seq_along(i), i))) 595s Geometry set for 5 features 595s Geometry type: MULTIPOINT 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 2 xmax: 12 ymax: 15 595s CRS: NA 595s MULTIPOINT ((0 2)) 595s MULTIPOINT ((1 3)) 595s > try(yy <- st_cast(pt, "LINESTRING", rep(seq_along(i), i))) 595s > 595s > #(zz = st_cast(yy, "MULTILINESTRING")) 595s > #(zz = st_cast(yy, "POLYGON")) 595s > 595s > st_cast(mls, "LINESTRING") 595s Geometry set for 3 features 595s Geometry type: LINESTRING 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 595s CRS: NA 595s > 595s > (g = st_sfc(c(mls, ls))) 595s MULTIPOINT ((10 13)) 595s MULTIPOINT ((11 14)) 595s MULTIPOINT ((12 15)) 595s LINESTRING (0 0, 10 0, 10 10, 0 10) 595s LINESTRING (5 5, 5 6, 6 6, 6 5) 595s LINESTRING (0 0, 1 0, 1 1, 0 1) 595s Geometry set for 4 features 595s Geometry type: GEOMETRY 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 0 xmax: 12 ymax: 15 595s CRS: NA 595s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5... 595s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1)) 595s LINESTRING (0 2, 1 3) 595s LINESTRING (10 13, 11 14, 12 15) 595s > st_cast(g, "MULTILINESTRING") 595s Geometry set for 4 features 595s Geometry type: MULTILINESTRING 595s Dimension: XY 595s Bounding box: xmin: 0 ymin: 0 xmax: 12 ymax: 15 595s CRS: NA 595s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5... 595s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1)) 595s MULTILINESTRING ((0 2, 1 3)) 595s MULTILINESTRING ((10 13, 11 14, 12 15)) 595s > expect_warning(st_cast(g, "LINESTRING")) 596s > st_cast(st_cast(g, "MULTILINESTRING"), "LINESTRING") # will not loose 596s Geometry set for 5 features 596s Geometry type: LINESTRING 596s Dimension: XY 596s Bounding box: xmin: 0 ymin: 0 xmax: 12 ymax: 15 596s CRS: NA 597s LINESTRING (0 0, 10 0, 10 10, 0 10) 597s LINESTRING (5 5, 5 6, 6 6, 6 5) 597s LINESTRING (0 0, 1 0, 1 1, 0 1) 597s LINESTRING (0 2, 1 3) 597s LINESTRING (10 13, 11 14, 12 15) 597s POINT (0 0) 597s POINT (10 0) 597s POINT (10 10) 597s POINT (0 10) 597s POINT (5 5) 597s MULTIPOINT ((0 0), (10 0), (10 10), (0 10)) 597s MULTIPOINT ((5 5), (5 6), (6 6), (6 5)) 597s MULTIPOINT ((0 0), (1 0), (1 1), (0 1)) 597s > 597s > gc = st_sfc(st_geometrycollection( 597s + list( 597s + st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 597s + rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 597s + st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1)))), 597s + st_point(0:1) 597s + ))) 597s > try(st_cast(mls, "POINT")) 597s Geometry set for 12 features 597s Geometry type: POINT 597s Dimension: XY 597s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 597s CRS: NA 597s First 5 geometries: 597s > try(st_cast(mls, "MULTIPOINT")) 597s Geometry set for 3 features 597s Geometry type: MULTIPOINT 597s Dimension: XY 597s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 597s CRS: NA 597s > 597s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 597s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 597s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 597s > pol1 = list(outer, hole1, hole2) 597s > pol2 = list(outer + 12, hole1 + 12) 597s > pol3 = list(outer + 24) 597s > mp = list(pol1,pol2,pol3) 597s > mp1 = st_multipolygon(mp) 597s > s = st_sfc(mp1) 597s > x = st_cast(s, "MULTIPOINT") 597s > x = st_cast(s, "POINT") 597s > expect_warning(st_cast(mp1, "LINESTRING")) 597s > expect_warning(st_cast(mp1, "POINT")) 597s > mls = mls[[1]] 597s > class(mls) 597s [1] "XY" "MULTILINESTRING" "sfg" 597s > #expect_error(st_cast(mls, "POLYGON")) 597s > st_cast(mls, "POLYGON") 597s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5 6, 6 6, 6 5, 5 5)) 597s > 597s > expect_warning(st_cast(mls, "POINT")) 597s > p1 = st_polygon(pol1) 597s > expect_warning(st_cast(p1, "POINT")) 597s > ls = ls[[1]] 597s > class(ls) 597s [1] "XY" "LINESTRING" "sfg" 597s > expect_warning(st_cast(ls, "POINT")) 597s > 597s > mls = st_cast(p1, "MULTILINESTRING") 597s > p2 = st_cast(mls, "POLYGON") 597s > 597s > # st_is: 597s > st_is(st_point(0:1), "POINT") 597s [1] TRUE 597s > sfc = st_sfc(st_point(0:1), st_linestring(matrix(1:6,,2))) 597s > st_is(sfc, "POINT") 597s [1] TRUE FALSE 597s > st_is(sfc, "POLYGON") 597s [1] FALSE FALSE 597s > st_is(sfc, "LINESTRING") 597s [1] FALSE TRUE 597s > st_is(st_sf(a = 1:2, sfc), "LINESTRING") 597s [1] FALSE TRUE 597s > st_is(sfc, c("POINT", "LINESTRING")) 597s [1] TRUE TRUE 597s > 597s > #1194: 597s > wkt <- "MULTICURVE (COMPOUNDCURVE (LINESTRING (-83.62333 35.55244, -83.62328 35.55232, -83.62323 35.55223, -83.62319 35.55216, -83.62312 35.55209, -83.6231 35.55207), CIRCULARSTRING (-83.6231 35.55207, -83.62307 35.55205, -83.62302 35.55204), LINESTRING (-83.62302 35.55204, -83.62299 35.55203, -83.62289 35.55198, -83.62281 35.55189, -83.62271 35.55182)))" 597s > g <- st_as_sfc(wkt) 597s > g <- st_sf(demo = "test", geom = g, crs = 4326) 597s > m = st_cast(g, "MULTILINESTRING") 597s > identical(m$geom[[1]], st_cast(g$geom[[1]], "MULTILINESTRING")) 597s [1] TRUE 597s > 597s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon()), 'MULTIPOLYGON') #1961 597s Geometry set for 2 features (with 2 geometries empty) 597s Geometry type: MULTIPOLYGON 597s Dimension: XY 597s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 597s CRS: NA 597s MULTIPOLYGON EMPTY 597s MULTIPOLYGON EMPTY 597s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon(), st_point(0:1)), 'POINT') #1961 597s Geometry set for 3 features (with 2 geometries empty) 597s Geometry type: POINT 597s Dimension: XY 597s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 597s CRS: NA 597s POINT EMPTY 597s POINT EMPTY 597s POINT (0 1) 597s > 597s BEGIN TEST crs.R 598s 598s R version 4.3.2 (2023-10-31) -- "Eye Holes" 598s Copyright (C) 2023 The R Foundation for Statistical Computing 598s Platform: aarch64-unknown-linux-gnu (64-bit) 598s 598s R is free software and comes with ABSOLUTELY NO WARRANTY. 598s You are welcome to redistribute it under certain conditions. 598s Type 'license()' or 'licence()' for distribution details. 598s 598s R is a collaborative project with many contributors. 598s Type 'contributors()' for more information and 598s 'citation()' on how to cite R or R packages in publications. 598s 598s Type 'demo()' for some demos, 'help()' for on-line help, or 598s 'help.start()' for an HTML browser interface to help. 598s Type 'q()' to quit R. 598s 598s > suppressPackageStartupMessages(library(sf)) 601s > options(rgdal_show_exportToProj4_warnings = "none") 601s Warning message: 601s package 'sf' was built under R version 4.3.3 601s > suppressWarnings(st_crs(-1)) 601s Coordinate Reference System: NA 601s > suppressWarnings(st_crs(999999)) 601s Coordinate Reference System: NA 601s > inherits(try(st_crs("error"), silent = TRUE), "try-error") 601s [1] TRUE 601s > str = "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725 +units=m +no_defs" 601s > x <- st_crs(str) 601s > x<- st_crs(3857) 601s > str = st_crs(3857)$proj4string 601s > st_crs(3857)$units 601s [1] "m" 601s > x = st_crs("+proj=longlat +datum=WGS84") 601s > x = st_crs(4326) 601s > x = st_crs("+proj=laea") # no EPSG 601s > 601s > x = st_sfc(st_point(0:1)) 601s > y = st_crs(x, parameters = TRUE) 601s > st_crs(x) = 4326 601s > y = st_crs(x, parameters = TRUE) 601s > 601s > from = st_crs(4326)$proj4string 601s > to = st_crs(3857)$proj4string 601s > ret = sf_project(from, to, rbind(c(0,0), c(1,1))) 601s > round(ret, 7) 601s [,1] [,2] 601s [1,] 0.0 0.0 601s [2,] 111319.5 111325.1 601s > # create Inf points: #1227/#1228 601s > suppressWarnings( 601s + sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE) 601s + ) 601s [,1] [,2] 601s [1,] 0 -53554590 601s [2,] NA NA 601s > sf_project(to, from, ret) 601s [,1] [,2] 601s [1,] 0 0 601s [2,] 1 1 601s > suppressWarnings( 601s + sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE) 601s + ) 601s [,1] [,2] 601s [1,] 0 -53554590 601s [2,] NA NA 601s > st_transform(st_sfc(st_point(c(0,0)), st_point(c(1,1)), crs = 4326), 3857) 601s Geometry set for 2 features 601s Geometry type: POINT 601s Dimension: XY 601s Bounding box: xmin: 0 ymin: 0 xmax: 111319.5 ymax: 111325.1 601s Projected CRS: WGS 84 / Pseudo-Mercator 601s POINT (0 0) 601s > POINT (111319.5 111325.1) 601s if (Sys.getenv("USER") %in% c("edzer", "travis")) { # causes memory leaks: 601s + stopifnot(inherits(try(sf_project("+proj=longlat", "+proj=bar", matrix(1:4,2)), silent = TRUE), "try-error")) 601s + stopifnot(inherits(try(sf_project("+proj=foo", "+proj=longlat", matrix(1:4,2)), silent = TRUE), "try-error")) 601s + } 601s > 601s > if (sf_extSoftVersion()["USE_PROJ_H"] == "true" || sf_proj_info("have_datum_files")) { 601s + "datum files installed" 601s + } else { 601s + "datum files not installed" 601s + } 601s [1] "datum files installed" 601s > 601s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 601s + x0 = sp::CRS("+init=epsg:4326") 601s + cat(sp::wkt(x0), "\n") 601s + x = st_crs(x0) 601s + print(x) 601s + 601s + y0 = st_crs(4326) 601s + y0 601s + y = as(y0, "CRS") 601s + cat(sp::wkt(y), "\n") 601s + } 602s GEOGCRS["WGS 84", 602s ENSEMBLE["World Geodetic System 1984 ensemble", 602s MEMBER["World Geodetic System 1984 (Transit)", 602s ID["EPSG",1166]], 602s MEMBER["World Geodetic System 1984 (G730)", 602s ID["EPSG",1152]], 602s MEMBER["World Geodetic System 1984 (G873)", 602s ID["EPSG",1153]], 602s MEMBER["World Geodetic System 1984 (G1150)", 602s ID["EPSG",1154]], 602s MEMBER["World Geodetic System 1984 (G1674)", 602s ID["EPSG",1155]], 602s MEMBER["World Geodetic System 1984 (G1762)", 602s ID["EPSG",1156]], 602s MEMBER["World Geodetic System 1984 (G2139)", 602s ID["EPSG",1309]], 602s ELLIPSOID["WGS 84",6378137,298.257223563, 602s LENGTHUNIT["metre",1], 602s ID["EPSG",7030]], 602s ENSEMBLEACCURACY[2.0], 602s ID["EPSG",6326]], 602s PRIMEM["Greenwich",0, 602s ANGLEUNIT["degree",0.0174532925199433], 602s ID["EPSG",8901]], 602s CS[ellipsoidal,2], 602s AXIS["longitude",east, 602s ORDER[1], 602s ANGLEUNIT["degree",0.0174532925199433, 602s ID["EPSG",9122]]], 602s AXIS["latitude",north, 602s ORDER[2], 602s ANGLEUNIT["degree",0.0174532925199433, 602s ID["EPSG",9122]]], 602s USAGE[ 602s SCOPE["unknown"], 602s AREA["World."], 602s BBOX[-90,-180,90,180]]] 602s Coordinate Reference System: 602s User input: WGS 84 602s wkt: 602s GEOGCRS["WGS 84", 602s ENSEMBLE["World Geodetic System 1984 ensemble", 602s MEMBER["World Geodetic System 1984 (Transit)", 602s ID["EPSG",1166]], 602s MEMBER["World Geodetic System 1984 (G730)", 602s ID["EPSG",1152]], 602s MEMBER["World Geodetic System 1984 (G873)", 602s ID["EPSG",1153]], 602s MEMBER["World Geodetic System 1984 (G1150)", 602s ID["EPSG",1154]], 602s MEMBER["World Geodetic System 1984 (G1674)", 602s ID["EPSG",1155]], 602s MEMBER["World Geodetic System 1984 (G1762)", 602s ID["EPSG",1156]], 602s MEMBER["World Geodetic System 1984 (G2139)", 602s ID["EPSG",1309]], 602s ELLIPSOID["WGS 84",6378137,298.257223563, 602s LENGTHUNIT["metre",1], 602s ID["EPSG",7030]], 602s ENSEMBLEACCURACY[2.0], 602s ID["EPSG",6326]], 602s PRIMEM["Greenwich",0, 602s ANGLEUNIT["degree",0.0174532925199433], 602s ID["EPSG",8901]], 602s CS[ellipsoidal,2], 602s AXIS["longitude",east, 602s ORDER[1], 602s ANGLEUNIT["degree",0.0174532925199433, 602s ID["EPSG",9122]]], 602s AXIS["latitude",north, 602s ORDER[2], 602s ANGLEUNIT["degree",0.0174532925199433, 602s ID["EPSG",9122]]], 602s USAGE[ 602s SCOPE["unknown"], 602s AREA["World."], 602s BBOX[-90,-180,90,180]]] 602s GEOGCRS["WGS 84", 602s ENSEMBLE["World Geodetic System 1984 ensemble", 602s MEMBER["World Geodetic System 1984 (Transit)"], 602s MEMBER["World Geodetic System 1984 (G730)"], 602s MEMBER["World Geodetic System 1984 (G873)"], 602s MEMBER["World Geodetic System 1984 (G1150)"], 602s MEMBER["World Geodetic System 1984 (G1674)"], 602s MEMBER["World Geodetic System 1984 (G1762)"], 602s MEMBER["World Geodetic System 1984 (G2139)"], 602s ELLIPSOID["WGS 84",6378137,298.257223563, 602s LENGTHUNIT["metre",1]], 602s ENSEMBLEACCURACY[2.0]], 602s PRIMEM["Greenwich",0, 602s ANGLEUNIT["degree",0.0174532925199433]], 602s CS[ellipsoidal,2], 602s AXIS["geodetic latitude (Lat)",north, 602s ORDER[1], 602s ANGLEUNIT["degree",0.0174532925199433]], 602s AXIS["geodetic longitude (Lon)",east, 602s ORDER[2], 602s ANGLEUNIT["degree",0.0174532925199433]], 602s USAGE[ 602s SCOPE["Horizontal component of 3D system."], 602s AREA["World."], 602s BBOX[-90,-180,90,180]], 602s ID["EPSG",4326]] 602s > Warning message: 602s In CPL_crs_from_input(x) : 602s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 602s 602s > # https://github.com/r-spatial/sf/issues/1170 602s > g = st_as_sfc("POLYGON ((-61.66957 10.69214, -61.565 10.75728, -61.37453 10.77654, -61.40721 10.60681, -61.66957 10.69214))") 602s > d = st_as_sf(data.frame(id=1, geometry=g), crs=4326) 602s > st_area(d) 602s 350534486 [m^2] 602s > st_area(st_transform(d, 2314)) 602s 349124497 [m^2] 602s > 602s > st_axis_order() 602s [1] FALSE 602s > if (compareVersion(sf_extSoftVersion()["GDAL"], "2.5.0") > -1) 602s + st_axis_order(TRUE) 602s > st_axis_order(FALSE) 602s > 602s BEGIN TEST dist.R 603s 603s R version 4.3.2 (2023-10-31) -- "Eye Holes" 603s Copyright (C) 2023 The R Foundation for Statistical Computing 603s Platform: aarch64-unknown-linux-gnu (64-bit) 603s 603s R is free software and comes with ABSOLUTELY NO WARRANTY. 603s You are welcome to redistribute it under certain conditions. 603s Type 'license()' or 'licence()' for distribution details. 603s 603s R is a collaborative project with many contributors. 603s Type 'contributors()' for more information and 603s 'citation()' on how to cite R or R packages in publications. 603s 603s Type 'demo()' for some demos, 'help()' for on-line help, or 603s 'help.start()' for an HTML browser interface to help. 603s Type 'q()' to quit R. 603s 603s > suppressPackageStartupMessages(library(sf)) 606s > Warning message: 606s package 'sf' was built under R version 4.3.3 606s suppressPackageStartupMessages(library(units)) 606s > 606s > x = st_sfc( 606s + st_point(c(0,0)), 606s + st_point(c(1,0)), 606s + st_point(c(2,0)), 606s + st_point(c(3,0)), 606s + crs = 4326 606s + ) 606s > 606s > y = st_sfc( 606s + st_point(c(0,10)), 606s + st_point(c(1,0)), 606s + st_point(c(2,0)), 606s + st_point(c(3,0)), 606s + st_point(c(4,0)), 606s + crs = 4326 606s + ) 606s > 606s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 606s + d.sf = st_distance(x, y) 606s + d.sp = spDists(as(x, "Spatial"), as(y, "Spatial")) 606s + units(d.sp) = as_units("km") 606s + print(round(d.sf - d.sp, 7)) 606s + 606s + #summary(unclass(d.sf) - d.sp) 606s + 606s + st_crs(x) = st_crs(y) = NA 606s + d.sf = st_distance(x, y) 606s + d.sp = spDists(as(x, "Spatial"), as(y, "Spatial")) 606s + print(round(d.sf - d.sp, 7)) 606s + } 607s Units: [m] 607s [,1] [,2] [,3] [,4] [,5] 607s [1,] 6107.765 -124.3896 -248.7792 -373.1688 -497.5585 607s [2,] 6065.138 0.0000 -124.3896 -248.7792 -373.1688 607s [3,] 5940.569 -124.3896 0.0000 -124.3896 -248.7792 607s [4,] 5743.252 -248.7792 -124.3896 0.0000 -124.3896 607s [,1] [,2] [,3] [,4] [,5] 607s [1,]LINESTRING (0 10, 1 0, 2 0, 3 0, 4 0) 607s 0 0 0 0 0 607s [2,] 0 0 0 0 0 607s [3,] 0 0 0 0 0 607s [4,] 0 0 0 0 0 607s > 607s > # st_length: 607s > st_crs(y) = 4326 607s > (z = st_sfc(st_linestring(rbind(c(0,10), c(1,0), c(2,0), c(3,0), c(4,0))), crs = 4326)) 607s Geometry set for 1 feature 607s Geometry type: LINESTRING 607s Dimension: XY 607s Bounding box: xmin: 0 ymin: 0 xmax: 4 ymax: 10 607s Geodetic CRS: WGS 84 607s > d = st_distance(y, y) 607s > round(d, 7) 607s Units: [m] 607s [,1] [,2] [,3] [,4] [,5] 607s [1,] 0 1117440.6 1133750.1 1160423.1 1196767.0 607s [2,] 1117441 0.0 111195.1 222390.2 333585.3 607s [3,] 1133750 111195.1 0.0 111195.1 222390.2 607s [4,] 1160423 222390.2 111195.1 0.0 111195.1 607s [5,] 1196767 333585.3 222390.2 111195.1 0.0 607s > st_length(z) 607s 1451026 [m] 607s > st_length(z) - sum(d[1,2], d[2,3], d[3,4], d[4,5]) 607s 0 [m] 607s > 607s > # st_line_sample: 607s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 607s + st_linestring(rbind(c(0,0),c(10,0)))) 607s > # set.seed(135) 607s > st_line_sample(ls, density = 1) 607s Geometry set for 2 features 607s Geometry type: MULTIPOINT 607s Dimension: XY 607s Bounding box: xmin: 0 ymin: 0 xmax: 9.5 ymax: 0.5 607s CRS: NA 607s MULTIPOINT ((0 0.5)) 607s MULTIPOINT ((0.5 0), (1.5 0), (2.5 0), (3.5 0),... 607s > 607s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 607s + st_linestring(rbind(c(0,0),c(.1,0))), crs = 4326) 607s > 607s > st_length(ls) 607s Units: [m] 607s [1] 111195.10 11119.51 607s > try(st_line_sample(ls, density = 1/1000)) 607s Error in st_line_sample(ls, density = 1/1000) : 607s st_line_sample for longitude/latitude not supported; use st_segmentize? 607s > x = st_line_sample(st_transform(ls, 3857), density = 1/1000) # one per km 607s > 607s BEGIN TEST dplyr.R 607s 607s R version 4.3.2 (2023-10-31) -- "Eye Holes" 607s Copyright (C) 2023 The R Foundation for Statistical Computing 607s Platform: aarch64-unknown-linux-gnu (64-bit) 607s 607s R is free software and comes with ABSOLUTELY NO WARRANTY. 607s You are welcome to redistribute it under certain conditions. 607s Type 'license()' or 'licence()' for distribution details. 607s 607s R is a collaborative project with many contributors. 607s Type 'contributors()' for more information and 607s 'citation()' on how to cite R or R packages in publications. 607s 607s Type 'demo()' for some demos, 'help()' for on-line help, or 607s 'help.start()' for an HTML browser interface to help. 607s Type 'q()' to quit R. 607s 608s > suppressPackageStartupMessages(library(sf)) 610s Warning message: 610s > package 'sf' was built under R version 4.3.3 610s 610s > if (require(dplyr, quietly = TRUE)) { 610s + options(dplyr.summarise.inform=FALSE) 610s + read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>% 611s + st_transform(3857) -> nc 611s + nc %>% filter(AREA > .1) %>% plot() 611s + 611s + # plot 10 smallest counties in grey: 611s + nc %>% 611s + select(BIR74, geometry) %>% 611s + plot() 611s + 611s + nc %>% 611s + select(AREA, geometry) %>% 611s + arrange(AREA) %>% 611s + slice(1:10) %>% 611s + plot(add = TRUE, col = 'grey', main ="") 611s + 611s + # select: check both when geometry is part of the selection, and when not: 611s + nc %>% select(SID74, SID79) %>% names() 611s + nc %>% select(SID74, SID79, geometry) %>% names() 611s + nc %>% select(SID74, SID79) %>% class() 611s + nc %>% select(SID74, SID79, geometry) %>% class() 611s + 611s + # group_by: 611s + nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25)) 611s + nc %>% group_by(area_cl) %>% class() 611s + 611s + # mutate: 611s + nc2 <- nc %>% mutate(area10 = AREA/10) 611s + 611s + # transmute: 611s + nc %>% transmute(AREA = AREA/10, geometry = geometry) %>% class() 611s + nc %>% transmute(AREA = AREA/10) %>% class() 611s + 611s + # rename: 611s + nc2 <- nc %>% rename(area = AREA) 611s + 611s + # distinct: 611s + nc[c(1:100,1:10),] %>% distinct() %>% nrow() 611s + 611s + # summarize: 611s + nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25)) 611s + nc.g <- nc %>% group_by(area_cl) 611s + nc.g %>% summarise(mean(AREA)) 611s + nc.g %>% summarize(mean(AREA)) %>% plot(col = 3:6/7) 611s + 611s + library(tidyr) 611s + 611s + # time-wide to long table, using tidyr::gather 611s + # stack the two SID columns for the July 1, 1974 - June 30, 1978 and July 1, 1979 - June 30, 1984 periods 611s + # (see https://cran.r-project.org/web/packages/spdep/vignettes/sids.pdf) 611s + nc %>% select(SID74, SID79, geometry) %>% gather("VAR", "SID", -geometry) %>% summary() 611s + 611s + # spread: 611s + nc$row = 1:100 611s + nc.g <- nc %>% select(SID74, SID79, row) %>% gather("VAR", "SID", -row, -geometry) 611s + nc.g %>% tail() 611s + nc.g %>% spread(VAR, SID) %>% head() 611s + nc %>% select(SID74, SID79, geometry, row) %>% gather("VAR", "SID", -geometry, -row) %>% spread(VAR, SID) %>% head() 611s + 611s + # test st_set_crs in pipe: 611s + sfc = st_sfc(st_point(c(0,0)), st_point(c(1,1))) 611s + x <- sfc %>% st_set_crs(4326) %>% st_transform(3857) 611s + x 611s + 611s + read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>% 611s + st_transform(3857) -> nc 611s + nc.merc <- st_transform(nc, 32119) # NC State Plane 611s + suppressPackageStartupMessages(library(units)) 611s + install_unit("person") 611s + person = as_units("person") 611s + nc.merc <- nc.merc %>% mutate(area = st_area(nc.merc), dens = BIR74 * person / area) 611s + 611s + # summary(nc.merc$dens) # requires units 0.4-2 611s + nc.merc$area_cl <- cut(nc$AREA, c(0, .1, .12, .15, .25)) 611s + nc.grp <- nc.merc %>% group_by(area_cl) 611s + 611s + out <- nc.grp %>% summarise(A = sum(area), pop = sum(dens * area), 611s + new_dens = sum(dens * area)/sum(area)) 611s + 611s + # mean densities depend on grouping: 611s + nc.merc %>% summarize(mean(dens)) 611s + out %>% summarise(mean(new_dens)) 611s + 611s + # total densities don't: 611s + nc.merc %>% summarise(sum(area * dens)) 611s + out %>% summarise(sum(A * new_dens)) 611s + 611s + conn = system.file("gpkg/nc.gpkg", package = "sf") 611s + 611s + if (require(DBI, quietly = TRUE) && require(RSQLite, quietly = TRUE)) { 611s + con = dbConnect(SQLite(), dbname = system.file("gpkg/nc.gpkg", package = "sf")) 611s + dbReadTable(con, "nc.gpkg") %>% filter(AREA > 0.2) %>% collect %>% st_sf 611s 611s Attaching package: 'dplyr' 611s 611s The following objects are masked from 'package:stats': 611s 611s filter, lag 611s 611s + 611s + # nest: 611s + storms.sf = st_as_sf(storms, coords = c("long", "lat"), crs = 4326) 611s + x <- storms.sf %>% group_by(name, year) %>% nest 611s + 611s + nrow(distinct(nc[c(1,1,1,2,2,3:100),])) 611s + 611s + # set.seed(1331) 611s + nc$gp <- sample(10, 100, replace=TRUE) 611s + # Get centroid of each group of polygons; https://github.com/r-spatial/sf/issues/969 611s + nc_gp_cent <- nc %>% 611s + group_by(gp) %>% 611s + group_map(st_area) 611s + 611s + nc %>% st_filter(nc[1,]) %>% nrow 611s + } # DBI & SQLITE 611s + } # dplyr 611s The following objects are masked from 'package:base': 611s 611s intersect, setdiff, setequal, union 611s 616s [1] 4Warning message: 616s 616s > 616s plotting the first 10 out of 14 attributes; use max.plot = 14 to plot all 616s BEGIN TEST empty.R 616s 616s R version 4.3.2 (2023-10-31) -- "Eye Holes" 616s Copyright (C) 2023 The R Foundation for Statistical Computing 616s Platform: aarch64-unknown-linux-gnu (64-bit) 616s 616s R is free software and comes with ABSOLUTELY NO WARRANTY. 616s You are welcome to redistribute it under certain conditions. 616s Type 'license()' or 'licence()' for distribution details. 616s 616s R is a collaborative project with many contributors. 616s Type 'contributors()' for more information and 616s 'citation()' on how to cite R or R packages in publications. 616s 616s Type 'demo()' for some demos, 'help()' for on-line help, or 616s 'help.start()' for an HTML browser interface to help. 616s Type 'q()' to quit R. 616s 616s > suppressPackageStartupMessages(library(sf)) 619s Warning message: 619s package 'sf' was built under R version 4.3.3 619s > 619s > # create empty geometries: 619s > st_point(rep(NA_real_,2)) 619s > POINT EMPTY 619s st_point(rep(NA_real_,3), dim = "XYZ") 619s > st_point(rep(NA_real_,3), dim = "XYM") 619s > st_point(rep(NA_real_,4), dim = "XYZM") 619s > 619s > st_multipoint() 619s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYZ") 619s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYM") 619s > st_multipoint(matrix(numeric(0), 0, 4), dim = "XYZM") 619s > 619s > st_linestring(matrix(numeric(0), 0, 2), "XY") 619s > st_linestring(matrix(numeric(0), 0, 3), "XYZ") 619s > st_linestring(matrix(numeric(0), 0, 3), "XYM") 619s > st_linestring(matrix(numeric(0), 0, 4), "XYZM") 619s > 619s > st_multilinestring(list(), "XY") 619s > st_multilinestring(list(), "XYZ") 619s > st_multilinestring(list(), "XYM") 619s > st_multilinestring(list(), "XYZM") 619s > 619s > st_polygon(list(), "XY") 619s > st_polygon(list(), "XYZ") 619s > st_polygon(list(), "XYM") 619s > st_polygon(list(), "XYZM") 619s > 619s > st_multipolygon(list(), "XY") 619s > st_multipolygon(list(), "XYZ") 619s > st_multipolygon(list(), "XYM") 619s > st_multipolygon(list(), "XYZM") 619s > 619s > st_geometrycollection() 619s > st_geometrycollection(dim = "XYZ") 619s > st_geometrycollection(dim = "XYM") 619s > st_geometrycollection(dim = "XYZM") 619s > 619s > st_point(rep(NA_real_,2)) 619s > st_multipoint() 619s > st_linestring(matrix(numeric(0), 0, 2)) 619s > st_multilinestring(list(), "XY") 619s > st_polygon(list(), "XY") 619s > st_multipolygon(list(), "XY") 619s > st_geometrycollection(, "XY") 619s > 619s > (e1 = st_sfc( 619s + st_point(rep(NA_real_,2)), 619s + st_multipoint(), 619s + st_linestring(matrix(numeric(0), 0, 2)), 619s + st_multilinestring(list(), "XY"), 619s + st_polygon(list(), "XY"), 619s + st_multipolygon(list(), "XY"), 619s + st_geometrycollection(, "XY"))) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XY 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s CRS: NA 619s First 5 geometries: 619s > 619s > (e2 = st_sfc(st_point(rep(NA_real_,3), "XYZ"), 619s + st_multipoint(matrix(numeric(0),0,3), dim = "XYZ"), 619s + st_linestring(matrix(numeric(0), 0, 3)), 619s + st_multilinestring(list(), "XYZ"), 619s + st_polygon(list(), "XYZ"), 619s + st_multipolygon(list(), "XYZ"), 619s + st_geometrycollection(dim = "XYZ"))) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s POINT Z EMPTY 619s POINT M EMPTY 619s POINT ZM EMPTY 619s MULTIPOINT EMPTY 619s MULTIPOINT Z EMPTY 619s MULTIPOINT M EMPTY 619s MULTIPOINT ZM EMPTY 619s LINESTRING EMPTY 619s LINESTRING Z EMPTY 619s LINESTRING M EMPTY 619s LINESTRING ZM EMPTY 619s MULTILINESTRING EMPTY 619s MULTILINESTRING Z EMPTY 619s MULTILINESTRING M EMPTY 619s MULTILINESTRING ZM EMPTY 619s POLYGON EMPTY 619s POLYGON Z EMPTY 619s POLYGON M EMPTY 619s POLYGON ZM EMPTY 619s MULTIPOLYGON EMPTY 619s MULTIPOLYGON Z EMPTY 619s MULTIPOLYGON M EMPTY 619s MULTIPOLYGON ZM EMPTY 619s GEOMETRYCOLLECTION EMPTY 619s GEOMETRYCOLLECTION Z EMPTY 619s GEOMETRYCOLLECTION M EMPTY 619s GEOMETRYCOLLECTION ZM EMPTY 619s POINT EMPTY 619s MULTIPOINT EMPTY 619s LINESTRING EMPTY 619s MULTILINESTRING EMPTY 619s POLYGON EMPTY 619s MULTIPOLYGON EMPTY 619s GEOMETRYCOLLECTION EMPTY 619s POINT EMPTY 619s MULTIPOINT EMPTY 619s LINESTRING EMPTY 619s MULTILINESTRING EMPTY 619s POLYGON EMPTY 619s Dimension: XYZ 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s z_range: zmin: NA zmax: NA 619s CRS: NA 619s First 5 geometries: 619s POINT Z EMPTY 619s MULTIPOINT Z EMPTY 619s LINESTRING Z EMPTY 619s > MULTILINESTRING Z EMPTY 619s POLYGON Z EMPTY 619s 619s > (e3 = st_sfc(st_point(rep(NA_real_,3), "XYM"), 619s + st_multipoint(matrix(numeric(0),0,3), dim = "XYM"), 619s + st_linestring(matrix(numeric(0), 0, 3), "XYM"), 619s + st_multilinestring(list(), "XYM"), 619s + st_polygon(list(), "XYM"), 619s + st_multipolygon(list(), "XYM"), 619s + st_geometrycollection(dim = "XYM"))) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XYM 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s m_range: mmin: NA mmax: NA 619s CRS: NA 619s First 5 geometries: 619s > 619s > (e4 = st_sfc(st_point(rep(NA_real_,4)), 619s + st_multipoint(matrix(numeric(0),0,4), dim = "XYZM"), 619s + st_linestring(matrix(numeric(0), 0, 4)), 619s + st_multilinestring(list(), "XYZM"), 619s + st_polygon(list(), "XYZM"), 619s + st_multipolygon(list(), "XYZM"), 619s + st_geometrycollection(dim = "XYZM"))) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XYZM 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s z_range: zmin: NA zmax: NA 619s m_range: mmin: NA mmax: NA 619s CRS: NA 619s First 5 geometries: 619s > 619s > st_as_sfc(st_as_binary(e1, pureR = TRUE)) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XY 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s CRS: NA 619s First 5 geometries: 619s > st_as_sfc(st_as_binary(e1, pureR = FALSE)) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XY 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s CRS: NA 619s First 5 geometries: 619s > st_as_sfc(st_as_binary(e2, pureR = FALSE)) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XYZ 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s z_range: zmin: NA zmax: NA 619s CRS: NA 619s First 5 geometries: 619s > st_as_sfc(st_as_binary(e3, pureR = FALSE)) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XYM 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s m_range: mmin: NA mmax: NA 619s CRS: NA 619s First 5 geometries: 619s > st_as_sfc(st_as_binary(e4, pureR = FALSE)) 619s POINT M EMPTY 619s MULTIPOINT M EMPTY 619s LINESTRING M EMPTY 619s MULTILINESTRING M EMPTY 619s POLYGON M EMPTY 619s POINT ZM EMPTY 619s MULTIPOINT ZM EMPTY 619s LINESTRING ZM EMPTY 619s MULTILINESTRING ZM EMPTY 619s POLYGON ZM EMPTY 619s POINT EMPTY 619s MULTIPOINT EMPTY 619s LINESTRING EMPTY 619s MULTILINESTRING EMPTY 619s POLYGON EMPTY 619s POINT EMPTY 619s MULTIPOINT EMPTY 619s LINESTRING EMPTY 619s MULTILINESTRING EMPTY 619s POLYGON EMPTY 619s POINT Z EMPTY 619s MULTIPOINT Z EMPTY 619s LINESTRING Z EMPTY 619s MULTILINESTRING Z EMPTY 619s POLYGON Z EMPTY 619s POINT M EMPTY 619s MULTIPOINT M EMPTY 619s LINESTRING M EMPTY 619s MULTILINESTRING M EMPTY 619s POLYGON M EMPTY 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XYZM 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s z_range: zmin: NA zmax: NA 619s m_range: mmin: NA mmax: NA 619s CRS: NA 619s First 5 geometries: 619s POINT ZM EMPTY 619s MULTIPOINT ZM EMPTY 619s LINESTRING ZM EMPTY 619s MULTILINESTRING ZM EMPTY 619s POLYGON ZM EMPTY 619s > st_as_sfc(st_as_binary(e1, pureR = FALSE)) 619s Geometry set for 7 features (with 7 geometries empty) 619s Geometry type: GEOMETRY 619s Dimension: XY 619s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 619s CRS: NA 619s First 5 geometries: 619s POINT EMPTY 619s MULTIPOINT EMPTY 619s LINESTRING EMPTY 619s MULTILINESTRING EMPTY 619s POLYGON EMPTY 619s > 619s > # sfc_GEOMETRY: 619s > x = st_sfc(st_point(0:1), st_linestring(matrix(1:4,2,2))) 619s > st_intersects(x, x, sparse = FALSE) 619s [,1] [,2] 619s [1,] TRUE FALSE 619s [2,] FALSE TRUE 619s > 619s > # two empty geoms: 619s > x = st_sfc(st_multipoint(), st_linestring()) 619s > st_intersects(x, x, sparse = FALSE) 619s [,1] [,2] 619s [1,] FALSE FALSE 619s [2,] FALSE FALSE 619s > 619s > # write & read: 619s > x = st_sf(a = 2:1, geom = structure(st_sfc(st_linestring(), st_linestring(matrix(1:4,2))))) 619s > write_sf(x, "empty.gpkg") 619s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 619s > y = st_read("empty.gpkg", quiet = TRUE) 619s > all.equal(x, y) 619s [1] "Component \"geom\": Attributes: < Component \"crs\": Component \"input\": 'is.NA' value mismatch: 0 in current 1 in target >" 619s [2] "Component \"geom\": Attributes: < Component \"crs\": Component \"wkt\": 'is.NA' value mismatch: 0 in current 1 in target >" 619s > 619s > # https://github.com/edzer/sfr/issues/398 : 619s > pt = st_sfc(st_point(c(0,92)), crs = 4267) 619s > robin_crs <- "+proj=robin +lon_0=0 +x_0=0 +y_0=0 +ellps=WGS84 +datum=WGS84 +units=m +no_defs" 619s > # india_crs <- "+init=epsg:24383" # India-centered Lambert conformal conic projection 619s > india_crs <- "+proj=lcc +lat_1=12 +lat_0=12 +lon_0=80 +k_0=0.99878641 +x_0=2743195.5 +y_0=914398.5 +a=6377299.151 +b=6356098.145120132 +towgs84=295,736,257,0,0,0,0 +units=m +no_defs" 619s > st_transform(st_transform(pt, robin_crs), india_crs)[[1]] 620s > 620s POINT EMPTY 620s BEGIN TEST gdal_geom.R 620s 620s R version 4.3.2 (2023-10-31) -- "Eye Holes" 620s Copyright (C) 2023 The R Foundation for Statistical Computing 620s Platform: aarch64-unknown-linux-gnu (64-bit) 620s 620s R is free software and comes with ABSOLUTELY NO WARRANTY. 620s You are welcome to redistribute it under certain conditions. 620s Type 'license()' or 'licence()' for distribution details. 620s 620s R is a collaborative project with many contributors. 620s Type 'contributors()' for more information and 620s 'citation()' on how to cite R or R packages in publications. 620s 620s Type 'demo()' for some demos, 'help()' for on-line help, or 620s 'help.start()' for an HTML browser interface to help. 620s Type 'q()' to quit R. 620s 620s > suppressPackageStartupMessages(library(sf)) 623s > 623s > nc = st_read(system.file("shape/nc.shp", package="sf"), "nc", crs = 4267, 623s + agr = c(AREA = "aggregate", PERIMETER = "aggregate", CNTY_ = "identity", 623s + CNTY_ID = "identity", NAME = "identity", FIPS = "identity", FIPSNO = "identity", 623s + CRESS_ID = "identity", BIR74 = "aggregate", SID74 = "aggregate", NWBIR74 = "aggregate", 623s + BIR79 = "aggregate", SID79 = "aggregate", NWBIR79 = "aggregate"), quiet = TRUE) 623s Warning message: 623s package 'sf' was built under R version 4.3.3 623s > 623s > st_is_valid(nc) 623s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s > 623s > st_is_simple(nc) 623s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 623s > 623s > nc_tr = st_transform(nc, 3857) 624s > 624s > x = st_buffer(nc_tr, 1000) 624s > 624s > x = st_boundary(nc) 624s > 624s > x = st_convex_hull(nc) 624s > 624s > x = st_simplify(nc_tr, dTolerance = 1e4) 624s > 624s > x = st_simplify(nc_tr, preserveTopology = TRUE) 624s > 624s > if (sf:::CPL_geos_version() >= "3.4.0") 624s + x = st_triangulate(nc_tr) 624s > 624s > mls = st_multilinestring(list(matrix(c(0,0,0,1,1,1,0,0),,2,byrow=TRUE))) 624s > x = st_polygonize(mls) 624s > 624s > x = st_segmentize(nc_tr, 5e4) 624s > 624s > try(x <- st_segmentize(nc_tr, -0.1)) 624s Error : argument dfMaxLength should be positive 624s 624s > 624s > x = st_centroid(nc_tr) 624s Warning message: 624s st_centroid assumes attributes are constant over geometries 624s > x = st_point_on_surface(nc_tr) 624s Warning message: 624s st_point_on_surface assumes attributes are constant over geometries 624s > 624s > a = nc[1:5,] 624s > b = nc[4:10,] 624s > 624s > x <- st_intersection(a[1,] ,b) 624s Warning message: 624s attribute variables are assumed to be spatially constant throughout all geometries 624s > 624s > u = st_union(b) 624s > 624s > x <- st_intersection(st_geometry(a), st_geometry(u)) 624s > 624s > x = st_union(a[1,], b) 624s > 624s Warning message: 624s attribute variables are assumed to be spatially constant throughout all geometries 624s > x = st_union(a, st_union(b)) 624s > 624s Warning message: 624s attribute variables are assumed to be spatially constant throughout all geometries 624s > x = st_difference(a[1,], b) 624s > 624s > Warning message: 624s attribute variables are assumed to be spatially constant throughout all geometries 624s x = st_difference(a, st_union(b)) 624s Warning message: 624s attribute variables are assumed to be spatially constant throughout all geometries 624s > 624s > x = st_sym_difference(a[1,], b) 625s Warning message: 625s attribute variables are assumed to be spatially constant throughout all geometries 625s > 625s > x = st_sym_difference(a, st_union(b)) 625s > 625s Warning message: 625s attribute variables are assumed to be spatially constant throughout all geometries 625s > x = st_drivers() 625s > #cat(paste("GDAL has", nrow(x), "drivers\n")) 625s > 625s > # GEOS ops: 625s > 625s > st_relate(a, b) 625s although coordinates are longitude/latitude, st_relate assumes that they are 625s planar 625s [,1] [,2] [,3] [,4] [,5] [,6] 625s [1,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" 625s [2,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" 625s [3,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" 625s [4,] "2FFF1FFF2" "FF2FF1212" "FF2FF1212" "FF2F11212" "FF2FF1212" "FF2FF1212" 625s [5,] "FF2FF1212" "2FFF1FFF2" "FF2F11212" "FF2FF1212" "FF2FF1212" "FF2F11212" 625s [,7] 625s [1,] "FF2FF1212" 625s [2,] "FF2FF1212" 625s [3,] "FF2F11212" 625s [4,] "FF2FF1212" 625s [5,] "FF2FF1212" 625s > 625s > st_disjoint(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `disjoint' 625s 1: 1, 2, 3, 4, 5, 6, 7 625s 2: 1, 2, 3, 4, 5, 6, 7 625s 3: 1, 2, 3, 4, 5, 6 625s 4: 2, 3, 5, 6, 7 625s 5: 1, 4, 5, 7 625s > 625s > st_touches(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `touches' 625s 1: (empty) 625s 2: (empty) 625s 3: 7 625s 4: 4 625s 5: 3, 6 625s > 625s > st_crosses(a, b) 625s although coordinates are longitude/latitude, st_crosses assumes that they are 625s planar 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `crosses' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: (empty) 625s 5: (empty) 625s > 625s > st_within(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `within' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: 1 625s 5: 2 625s > 625s > st_contains(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `contains' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: 1 625s 5: 2 625s > 625s > st_overlaps(a, b) 625s although coordinates are longitude/latitude, st_overlaps assumes that they are 625s planar 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `overlaps' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: (empty) 625s 5: (empty) 625s > 625s > st_equals(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `equals' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: 1 625s 5: 2 625s > 625s > st_covers(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `covers' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: 1 625s 5: 2 625s > 625s > st_covered_by(a, b) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `covered_by' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: 1 625s 5: 2 625s > 625s > st_equals_exact(a, b, 0.01) 625s Sparse geometry binary predicate list of length 5, where the predicate 625s was `equals_exact' 625s 1: (empty) 625s 2: (empty) 625s 3: (empty) 625s 4: 1 625s 5: 2 625s > 625s > # st_is_within_distance(a, b, 2) 625s > 625s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2)))) 625s [1] POINT LINESTRING 625s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE 625s > 625s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2))), by_geometry = FALSE) 625s [1] GEOMETRY 625s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE 625s > 625s > st_zm(list(st_point(1:3), st_linestring(matrix(1:6,2,3)))) 625s [[1]] 625s POINT (1 2) 625s 625s [[2]] 625s LINESTRING (1 3, 2 4) 625s 625s > 625s > st_zm(list(st_point(1:2), st_linestring(matrix(1:6,3,2))), add = TRUE, "Z") 625s [[1]] 625s POINT (1 2) 625s 625s [[2]] 625s LINESTRING (1 4, 2 5, 3 6) 625s 625s > 625s > st_transform(st_sfc(st_point(c(0,0)), crs=4326), st_crs("+proj=geocent"))[[1]] 625s POINT Z (6378137 0 0) 625s > 625s > cbind(st_area(nc_tr[1:5,]), a$AREA) 625s [,1] [,2] 625s [1,] 1760230516 0.114 625s [2,] 946417787 0.061 625s [3,] 2202223078 0.143 625s [4,] 1074332698 0.070 625s [5,] 2352528086 0.153 625s > 625s > st_area(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))) 625s [1] 1 625s > 625s > st_length(st_linestring(rbind(c(0,0),c(0,1)))) 625s [1] 1 625s > 625s > st_length(st_multilinestring(list(rbind(c(0,0),c(0,1))))) 625s [1] 1 625s > 625s > try(st_length(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))))) 625s [1] 0 625s > 625s > st_area(st_multilinestring(list(rbind(c(0,0),c(0,1))))) 625s [1] 0 625s > 625s > # adds the (0.5 0.5) node: 625s > st_union(st_multilinestring(list(rbind(c(0,0),c(1,1)), rbind(c(0,1), c(1,0))))) 625s > 625s MULTILINESTRING ((0 0, 1 1), (0 1, 1 0)) 625s > p1 = st_point(c(7,52)) 625s > p2 = st_point(c(-30,20)) 625s > sfc = st_sfc(p1, p2) 625s > try(st_buffer(sfc, units::set_units(1000, km))) # error: no crs 625s Error in st_buffer.sfc(sfc, units::set_units(1000, km)) : 625s x does not have a crs set: can't convert units 625s > sfc = st_sfc(p1, p2, crs = 4326) 625s > try(st_buffer(sfc, units::set_units(1000, km))) # error: wrong units 625s Geometry set for 2 features 625s Geometry type: POLYGON 625s Dimension: XY 625s Bounding box: xmin: -39.65182 ymin: 10.93649 xmax: 21.97439 ymax: 61.16965 625s Geodetic CRS: WGS 84 625s POLYGON ((-1.035063 59.83701, -1.558398 59.8318... 625s POLYGON ((-22.57219 14.45171, -22.42915 14.4660... 625s > if (version$os == "linux-gnu") { # FIXME: why does this break on windows - degree symbol? 625s + x = st_buffer(sfc, units::set_units(0.1, rad)) # OK: will convert to arc_degrees 625s + } 625s > x = st_transform(sfc, 3857) 625s > x = st_buffer(x, units::set_units(1000, km)) # success 625s > 625s > cr = st_as_sfc("CIRCULARSTRING(0 0,1 0,1 1)") 625s > cr1 = st_sf(a = 1, geometry = cr) 625s > plot(cr) 626s > st_as_grob(cr[[1]]) 626s lines[GRID.lines.1] 626s > 626s > x = st_as_sfc("MULTISURFACE(CURVEPOLYGON(COMPOUNDCURVE(LINESTRING(-159.399779123 22.226016471, -159.399699153 22.226276431, -159.398736217 22.226118372, -159.398260872 22.226095318, -159.398140792 22.2260564590001, -159.398163058 22.2257268010001, -159.397882642 22.225394244, -159.397397157 22.225057335, -159.397318825 22.2251780230001, -159.396993115 22.225177984, -159.396748242 22.2248808800001, -159.396901679 22.224770398, -159.396876329 22.224673093, -159.399167008 22.224731392, -159.399502204 22.225551382), CIRCULARSTRING(-159.399502204 22.225551382, -159.399622762077 22.2257930044972, -159.399779123 22.226016471))))") 626s > mp <- x[[1]] %>% st_cast("MULTIPOLYGON") 626s > 626s > x = st_as_sfc("COMPOUNDCURVE(CIRCULARSTRING(0 0, 1 1, 1 0),(1 0, 0 1))") 626s > ls <- x[[1]] %>% st_cast() 626s > class(ls) 626s [1] "XY" "LINESTRING" "sfg" 626s > 626s > is.na(st_bbox(ls)) 626s [1] FALSE 626s > 626s > mp = st_combine(st_buffer(st_sfc(lapply(1:3, function(x) st_point(c(x,x)))), 0.2 * 1:3)) 626s > plot(st_centroid(mp), add = TRUE, col = 'red') # centroid of combined geometry 626s > plot(st_centroid(mp, of_largest_polygon = TRUE), add = TRUE, col = 'blue', pch = 3) # center of largest sub-polygon 626s > 626s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(0.5,0),c(0.5,0.5),c(0.5,0),c(1,0),c(1,1),c(0,1),c(0,0))))) 626s > suppressWarnings(st_is_valid(x)) 626s [1] FALSE 626s > y = st_make_valid(x) 626s > y = st_make_valid(x[[1]]) 626s > y = st_make_valid(st_sf(a = 1, geom = x)) 626s > st_is_valid(y) 626s [1] TRUE 626s > 626s BEGIN TEST geos.R 626s 626s R version 4.3.2 (2023-10-31) -- "Eye Holes" 626s Copyright (C) 2023 The R Foundation for Statistical Computing 626s Platform: aarch64-unknown-linux-gnu (64-bit) 626s 626s R is free software and comes with ABSOLUTELY NO WARRANTY. 626s You are welcome to redistribute it under certain conditions. 626s Type 'license()' or 'licence()' for distribution details. 626s 626s R is a collaborative project with many contributors. 626s Type 'contributors()' for more information and 626s 'citation()' on how to cite R or R packages in publications. 626s 626s Type 'demo()' for some demos, 'help()' for on-line help, or 626s 'help.start()' for an HTML browser interface to help. 626s Type 'q()' to quit R. 626s 626s > suppressPackageStartupMessages(library(sf)) 629s Warning message: 629s package 'sf' was built under R version 4.3.3 629s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf")) 629s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 629s > nc_checked = st_transform(nc, 32119, check = TRUE) 629s > ncm = st_transform(nc, 32119) 630s > 630s > x = st_transform(nc[1:10,], 32119) 630s > st_distance(x) 630s Units: [m] 630s [,1] [,2] [,3] [,4] [,5] [,6] [,7] 630s [1,] 0.00 0.00 25651.99 440561.48 299772.34 361529.73 419671.66 630s [2,] 0.00 0.00 0.00 409429.44 268945.05 332590.52 388545.58 630s [3,] 25651.99 0.00 0.00 367556.52 227018.38 290298.04 346669.14 630s [4,] 440561.48 409429.44 367556.52 0.00 67226.86 45537.62 0.00 630s [5,] 299772.34 268945.05 227018.38 67226.86 0.00 0.00 46527.56 630s [6,] 361529.73 332590.52 290298.04 45537.62 0.00 0.00 30213.17 630s [7,] 419671.66 388545.58 346669.14 0.00 46527.56 30213.17 0.00 630s [8,] 384593.29 354295.06 312351.76 16130.19 11926.86 0.00 0.00 630s [9,] 262353.97 231217.73 189310.73 140455.97 0.00 64606.27 119564.00 630s [10,] 71138.53 41943.71 0.00 330752.58 190183.42 252373.26 309863.33 630s [,8] [,9] [,10] 630s [1,] 384593.29 262353.97 71138.53 630s [2,] 354295.06 231217.73 41943.71 630s [3,] 312351.76 189310.73 0.00 630s [4,] 16130.19 140455.97 330752.58 630s [5,] 11926.86 0.00 190183.42 630s [6,] 0.00 64606.27 252373.26 630s [7,] 0.00 119564.00 309863.33 630s [8,] 0.00 85533.33 275391.07 630s [9,] 85533.33 0.00 152489.45 630s [10,] 275391.07 152489.45 0.00 630s > 630s > st_is_valid(nc) 630s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 630s > 630s > st_is_empty(st_sfc(st_point(), st_linestring())) 630s [1] TRUE TRUE 630s > 630s > ops = c("intersects", #"disjoint", 630s + "touches", "crosses", "within", "contains", "overlaps", "equals", "covers", "covered_by", "equals_exact") 630s > for (op in ops) { 630s + x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, FALSE) 630s + x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE) 630s + } 630s > 630s > ops = c("intersects", #"disjoint", 630s + "touches", "crosses", "within", "contains", "overlaps", "covers", "covered_by") 630s > df = data.frame(ops = ops) 630s > df$equal = NA 630s > for (op in ops) 630s + df[df$ops == op, "equal"] = identical( 630s + sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE, FALSE), 630s + sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE, TRUE) 630s + ) 631s > df 631s ops equal 631s 1 intersects TRUE 631s 2 touches TRUE 631s 3 crosses TRUE 631s 4 within TRUE 631s 5 contains TRUE 631s 6 overlaps TRUE 631s 7 covers TRUE 631s 8 covered_by TRUE 631s > 631s > st_contains_properly(ncm[1:3,], ncm[1:3]) 631s Sparse geometry binary predicate list of length 3, where the predicate 631s was `contains_properly' 631s 1: (empty) 631s 2: (empty) 631s 3: (empty) 631s > 631s > st_combine(nc) 631s Geometry set for 1 feature 631s Geometry type: MULTIPOLYGON 631s Dimension: XY 631s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 631s Geodetic CRS: NAD27 632s MULTIPOLYGON (((-81.47276 36.23436, -81.54084 3... 632s > 632s > st_dimension(st_sfc(st_point(0:1), st_linestring(rbind(c(0,0),c(1,1))), 632s + st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))))) 632s [1] 0 1 2 632s > 632s > ncbb = st_as_sfc(st_bbox(nc)) 632s > g = st_make_grid(ncbb) 632s > x = st_intersection(nc, g) 637s Warning message: 637s attribute variables are assumed to be spatially constant throughout all geometries 637s > x = st_intersection(g, nc) 640s > 640s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 640s + st_linestring(rbind(c(0,0),c(10,0)))) 640s > 640s > suppressWarnings(RNGversion("3.5.3")) 640s > set.seed(13531) 640s > 640s > st_line_sample(ls, density = 1, type = "random") 640s Geometry set for 2 features 640s Geometry type: MULTIPOINT 640s Dimension: XY 640s Bounding box: xmin: 0 ymin: 0 xmax: 6.880179 ymax: 0.8878369 640s CRS: NA 640s > 640s > g = st_make_grid(ncbb, n = c(20,10)) 640s MULTIPOINT ((0 0.8878369)) 640s MULTIPOINT ((0.2986488 0), (2.48417 0), (2.5678... 640s > 640s > a1 = st_interpolate_aw(nc["BIR74"], g, FALSE) 666s > sum(a1$BIR74) / sum(nc$BIR74) # not close to one: property is assumed spatially intensive 666s Warning message: 666s [1] 1.436123 666s > a2 = st_interpolate_aw(nc["BIR74"], g, extensive = TRUE) 666s In st_interpolate_aw.sf(nc["BIR74"], g, FALSE) : 666s st_interpolate_aw assumes attributes are constant or uniform over areas of x 691s Warning message: 691s In st_interpolate_aw.sf(nc["BIR74"], g, extensive = TRUE) : 691s st_interpolate_aw assumes attributes are constant or uniform over areas of x 691s > sum(a2$BIR74) / sum(nc$BIR74) 691s [1] 1 691s > 691s > # missing x: 691s > g = st_make_grid(offset = c(0,0), cellsize = c(1,1), n = c(10,10)) 691s > g = st_make_grid(what = "centers") 691s > length(g) 691s [1] 648 691s > g = st_make_grid(what = "corners") 691s > length(g) 691s [1] 703 691s > 691s > g1 = st_make_grid(ncbb, 0.1, what = "polygons", square = FALSE) 692s > g2 = st_make_grid(ncbb, 0.1, what = "points", square = FALSE) 693s > 693s > # st_line_merge: 693s > mls = st_multilinestring(list(rbind(c(0,0), c(1,1)), rbind(c(2,0), c(1,1)))) 693s > st_line_merge(mls) 693s LINESTRING (0 0, 1 1, 2 0) 693s > 693s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.5.0") > -1, silent = TRUE))) { 693s + # voronoi: 693s + set.seed(1) 693s + x = st_multipoint(matrix(runif(10),,2)) 693s + box = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0)))) 693s + v = st_sfc(st_voronoi(x, st_sfc(box))) 693s + plot(v, col = 0, border = 1, axes = TRUE) 693s + plot(box, add = TRUE, col = 0, border = 1) # a larger box is returned, as documented 693s + plot(x, add = TRUE, col = 'red', cex=2, pch=16) 693s + plot(st_intersection(st_cast(v), box)) # clip to smaller box 693s + plot(x, add = TRUE, col = 'red', cex=2, pch=16) 693s + 693s + v = st_voronoi(x) 693s + print(class(v)) 693s + v = st_sfc(st_voronoi(st_sfc(x))) 693s + print(class(v)) 693s + v = st_voronoi(st_sf(a = 1, geom = st_sfc(x))) 693s + print(class(v)) 693s + } 693s [1] "XY" "GEOMETRYCOLLECTION" "sfg" 693s [1] "sfc_GEOMETRYCOLLECTION" "sfc" 693s [1] "sf" "data.frame" 693s > 693s > i = st_intersects(ncm, ncm[1:88,]) 693s > all.equal(i, t(t(i))) 693s [1] TRUE 693s > 693s > # check use of pattern in st_relate: 693s > sfc = st_as_sfc(st_bbox(st_sfc(st_point(c(0,0)), st_point(c(3,3))))) 693s > grd = st_make_grid(sfc, n = c(3,3)) 693s > st_intersects(grd) 693s Sparse geometry binary predicate list of length 9, where the predicate 693s was `intersects' 693s 1: 1, 2, 4, 5 693s 2: 1, 2, 3, 4, 5, 6 693s 3: 2, 3, 5, 6 693s 4: 1, 2, 4, 5, 7, 8 693s 5: 1, 2, 3, 4, 5, 6, 7, 8, 9 693s 6: 2, 3, 5, 6, 8, 9 693s 7: 4, 5, 7, 8 693s 8: 4, 5, 6, 7, 8, 9 693s 9: 5, 6, 8, 9 693s > st_relate(grd, pattern = "****1****") 693s Sparse geometry binary predicate list of length 9, where the predicate 693s was `relate_pattern' 693s 1: 1, 2, 4 693s 2: 1, 2, 3, 5 693s 3: 2, 3, 6 693s 4: 1, 4, 5, 7 693s 5: 2, 4, 5, 6, 8 693s 6: 3, 5, 6, 9 693s 7: 4, 7, 8 693s 8: 5, 7, 8, 9 693s 9: 6, 8, 9 693s > st_relate(grd, pattern = "****0****") 693s Sparse geometry binary predicate list of length 9, where the predicate 693s was `relate_pattern' 693s 1: 5 693s 2: 4, 6 693s 3: 5 693s 4: 2, 8 693s 5: 1, 3, 7, 9 693s 6: 2, 8 693s 7: 5 693s 8: 4, 6 693s 9: 5 693s > st_rook = function(a, b = a, ...) st_relate(a, b, pattern = "F***1****", ...) 693s > st_rook(grd, sparse = FALSE) 693s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] 693s [1,] FALSE TRUE FALSE TRUE FALSE FALSE FALSE FALSE FALSE 693s [2,] TRUE FALSE TRUE FALSE TRUE FALSE FALSE FALSE FALSE 693s [3,] FALSE TRUE FALSE FALSE FALSE TRUE FALSE FALSE FALSE 693s [4,] TRUE FALSE FALSE FALSE TRUE FALSE TRUE FALSE FALSE 693s [5,] FALSE TRUE FALSE TRUE FALSE TRUE FALSE TRUE FALSE 693s [6,] FALSE FALSE TRUE FALSE TRUE FALSE FALSE FALSE TRUE 693s [7,] FALSE FALSE FALSE TRUE FALSE FALSE FALSE TRUE FALSE 693s [8,] FALSE FALSE FALSE FALSE TRUE FALSE TRUE FALSE TRUE 693s [9,] FALSE FALSE FALSE FALSE FALSE TRUE FALSE TRUE FALSE 693s > 693s > #if (Sys.getenv("USER") %in% c("edzer", "travis")) { # memory leaks: 693s > try(st_relate(st_point(), st_point(), pattern = "FF*FF****")) # error: use st_disjoint 693s Error : use st_disjoint for this pattern 693s > #} 693s > 693s > a = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], 100000, sparse = FALSE) 693s > b = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], units::set_units(100000, m), sparse = FALSE) 693s > all.equal(a, b) 693s [1] TRUE 693s > x = st_is_within_distance(nc[1:3,], nc[1:5,], 100000) 693s > y = st_is_within_distance(nc[1:3,], nc[1:5,], units::set_units(100, km)) 693s > all.equal(x, y) 693s [1] TRUE 693s > 693s > nc_3857 = st_transform(nc, 3857) 694s > a = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], 100000, sparse = FALSE) 694s > b = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], units::set_units(100000, m), sparse = FALSE) 694s > all.equal(a, b) 694s [1] TRUE 694s > x = st_is_within_distance(nc_3857, nc_3857, 100000) 694s > y = st_is_within_distance(nc_3857, nc_3857, units::set_units(100, km)) 694s > all.equal(x, y) 694s [1] TRUE 694s > 694s > pe = st_sfc(st_point()) 694s > p = st_sfc(st_point(c(0,0)), st_point(c(0,1)), st_point(c(0,2))) 694s > st_distance(p, p) 694s [,1] [,2] [,3] 694s [1,] 0 1 2 694s [2,] 1 0 1 694s [3,] 2 1 0 694s > st_distance(p, pe) 694s [,1] 694s [1,] NA 694s [2,] NA 694s [3,] NA 694s > st_distance(p, p, by_element = TRUE) 694s [1] 0 0 0 694s > st_crs(p) = 4326 694s > st_distance(p, p[c(2,3,1)], by_element = TRUE) 694s Units: [m] 694s [1] 111195.1 111195.1 222390.2 694s > p = st_transform(p, 3587) 694s > st_distance(p, p[c(2,3,1)], by_element = TRUE) 695s Units: [m] 695s [1] 144589.5 142873.3 287462.8 695s > 695s > # from https://github.com/r-spatial/sf/issues/458 : 695s > pts <- st_sfc(st_point(c(.5,.5)), st_point(c(1.5, 1.5)), st_point(c(2.5, 2.5))) 695s > pol <- st_polygon(list(rbind(c(0,0), c(2,0), c(2,2), c(0,2), c(0,0)))) 695s > pol_df <- data.frame(id = 1) 695s > st_geometry(pol_df) <- st_sfc(pol) 695s > st_intersects(pts, pol_df[pol_df$id == 2,]) # with empty sf/sfc 695s Sparse geometry binary predicate list of length 3, where the predicate 695s was `intersects' 695s 1: (empty) 695s 2: (empty) 695s 3: (empty) 695s > st_intersects(pts, pol_df[pol_df$id == 2,], sparse = FALSE) # with empty sf/sfc 695s 695s [1,] 695s [2,] 695s [3,] 695s > 695s > # st_node 695s > l = st_linestring(rbind(c(0,0), c(1,1), c(0,1), c(1,0), c(0,0))) 695s > st_node(l) 695s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1, 0 1, 0.5 0.5), (0.5 0.5, 1 0, 0 0)) 695s > st_node(st_sfc(l)) 695s Geometry set for 1 feature 695s Geometry type: MULTILINESTRING 695s Dimension: XY 695s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 695s CRS: NA 695s > MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1,... 695s st_node(st_sf(a = 1, st_sfc(l))) 695s Simple feature collection with 1 feature and 1 field 695s Geometry type: MULTILINESTRING 695s Dimension: XY 695s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 695s CRS: NA 695s a st_sfc.l. 695s 1 1 MULTILINESTRING ((0 0, 0.5 ... 695s > 695s > # print.sgbp: 695s > (lst = st_disjoint(nc, nc)) 695s Sparse geometry binary predicate list of length 100, where the 695s predicate was `disjoint' 695s first 10 elements: 695s 1: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, ... 695s 2: 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, ... 695s 3: 1, 4, 5, 6, 7, 8, 9, 11, 12, 13, ... 695s 4: 1, 2, 3, 5, 6, 8, 9, 10, 11, 12, ... 695s 5: 1, 2, 3, 4, 7, 8, 10, 11, 12, 13, ... 695s 6: 1, 2, 3, 4, 7, 9, 10, 11, 12, 13, ... 695s 7: 1, 2, 3, 5, 6, 9, 10, 11, 12, 13, ... 695s 8: 1, 2, 3, 4, 5, 9, 10, 11, 12, 13, ... 695s 9: 1, 2, 3, 4, 6, 7, 8, 10, 11, 12, ... 695s 10: 1, 2, 4, 5, 6, 7, 8, 9, 11, 13, ... 695s > # dim.sgbp: 695s > dim(lst) 695s [1] 100 100 695s > # as.matrix.sgbp: 695s > as.matrix(lst)[1:5, 1:5] 695s [,1] [,2] [,3] [,4] [,5] 695s [1,] FALSE FALSE TRUE TRUE TRUE 695s [2,] FALSE FALSE FALSE TRUE TRUE 695s [3,] TRUE FALSE FALSE TRUE TRUE 695s [4,] TRUE TRUE TRUE FALSE TRUE 695s [5,] TRUE TRUE TRUE TRUE FALSE 695s > # negate: 695s > !lst 695s Sparse geometry binary predicate list of length 100, where the 695s predicate was `!disjoint' 695s first 10 elements: 695s 1: 1, 2, 18, 19 695s 2: 1, 2, 3, 18 695s 3: 2, 3, 10, 18, 23, 25 695s 4: 4, 7, 56 695s 5: 5, 6, 9, 16, 28 695s 6: 5, 6, 8, 28 695s 7: 4, 7, 8, 17 695s 8: 6, 7, 8, 17, 20, 21 695s 9: 5, 9, 15, 16, 24, 31 695s 10: 3, 10, 12, 25, 26 695s > # as.data.frame: 695s > head(as.data.frame(lst), 10) 695s row.id col.id 695s 1 1 3 695s 2 1 4 695s 3 1 5 695s 4 1 6 695s 5 1 7 695s 6 1 8 695s 7 1 9 695s 8 1 10 695s 9 1 11 695s 10 1 12 695s > 695s > # snap: 695s > nc1 = st_transform(nc, 32119) 695s > g = st_make_grid(nc1, c(5000,5000), what = "centers") 695s > s = st_snap(nc1[1:3,], g, 2501*sqrt(2)) 695s > sfg = st_snap(st_geometry(nc1)[[1]], g, 2501*sqrt(2)) 695s > sfg = st_snap(st_geometry(nc1)[[1]], st_combine(g), 2501*sqrt(2)) 695s > 695s > # Hausdorff distance: http://geos.refractions.net/ro/doxygen_docs/html/classgeos_1_1algorithm_1_1distance_1_1DiscreteHausdorffDistance.html 695s > A = st_as_sfc("LINESTRING (0 0, 100 0, 10 100, 10 100)") 695s > B = st_as_sfc("LINESTRING (0 100, 0 10, 80 10)") 695s > st_distance(c(A,B)) 695s [,1] [,2] 695s [1,] 0.000000 8.176236 695s [2,] 8.176236 0.000000 695s > st_distance(c(A,B), which = "Hausdorff") 695s [,1] [,2] 695s [1,] 0.00000 22.36068 695s [2,] 22.36068 0.00000 695s > st_distance(c(A,B), which = "Hausdorff", par = 0.001) 695s [,1] [,2] 695s [1,] 2.929643e-14 4.789000e+01 695s [2,] 4.789000e+01 2.131628e-14 695s > LE = st_as_sfc("LINESTRING EMPTY") 695s > st_distance(c(A, LE), which = "Hausdorff", par = 0.001) 695s [,1] [,2] 695s [1,] 2.929643e-14 NA 695s [2,] NA NA 695s > 695s > # one-argument st_intersection and st_difference: 695s > set.seed(131) 695s > m = rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)) 695s > p = st_polygon(list(m)) 695s > n = 100 695s > l = vector("list", n) 695s > for (i in 1:n) 695s + l[[i]] = p + 10 * runif(2) 696s > s = st_sfc(l) 696s > plot(s, col = sf.colors(categorical = TRUE, alpha = .5)) 696s > d = st_difference(s) # sequential differences: s1, s2-s1, s3-s2-s1, ... 696s > plot(d, col = sf.colors(categorical = TRUE, alpha = .5)) 696s > i = st_intersection(s) # all intersections 696s > plot(i, col = sf.colors(categorical = TRUE, alpha = .5)) 697s > summary(lengths(st_overlaps(s, s))) 697s Min. 1st Qu. Median Mean 3rd Qu. Max. 697s 0.00 2.00 3.50 3.66 5.00 8.00 697s > summary(lengths(st_overlaps(d, d))) 697s Min. 1st Qu. Median Mean 3rd Qu. Max. 697s 0 0 0 0 0 0 697s > summary(lengths(st_overlaps(i, i))) 697s Min. 1st Qu. Median Mean 3rd Qu. Max. 697s 0 0 0 0 0 0 697s > 697s > sf = st_sf(s) 697s > i = st_intersection(sf) # all intersections 697s > plot(i["n.overlaps"]) 698s > summary(i$n.overlaps - lengths(i$origins)) 698s Min. 1st Qu. Median Mean 3rd Qu. Max. 698s 0 0 0 0 0 0 698s > 698s > # st_nearest_points: 698s > pt1 = st_point(c(.1,.1)) 698s > pt2 = st_point(c(.9,.9)) 698s > b1 = st_buffer(pt1, 0.1) 698s > b2 = st_buffer(pt2, 0.1) 698s > plot(b1, xlim = c(0,1), ylim = c(0,1)) 698s > plot(b2, add = TRUE) 698s > (ls0 = try(st_nearest_points(b1, b2))) # sfg 698s Geometry set for 1 feature 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893 698s CRS: NA 698s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2)))) # sfc 698s Geometry set for 1 feature 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893 698s CRS: NA 698s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2), pairwise = TRUE))) # sfc 698s Geometry set for 1 feature 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893 698s CRS: NA 698s > identical(ls0, ls) 698s [1] TRUE 698s > # plot(ls, add = TRUE, col = 'red') 698s > 698s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 698s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82... 698s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82... 698s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82... 698s > plot(st_geometry(nc)) 698s > ls = try(st_nearest_points(nc[1,], nc)) 698s > # plot(ls, col = 'red', add = TRUE) 698s > pts = st_cast(ls, "POINT") # gives all start & end points 698s There were 50 or more warnings (use warnings() to see the first 50) 698s > # starting, "from" points, corresponding to x: 698s > plot(pts[seq(1, 200, 2)], add = TRUE, col = 'blue') 698s > # ending, "to" points, corresponding to y: 698s > plot(pts[seq(2, 200, 2)], add = TRUE, col = 'red') 698s > 698s > # points to nearest features 698s > ls1 = st_linestring(rbind(c(0,0), c(1,0))) 698s > ls2 = st_linestring(rbind(c(0,0.1), c(1,0.1))) 698s > ls3 = st_linestring(rbind(c(0,1), c(1,1))) 698s > (l = st_sfc(ls1, ls2, ls3)) 698s Geometry set for 3 features 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 698s CRS: NA 698s > 698s LINESTRING (0 0, 1 0) 698s LINESTRING (0 0.1, 1 0.1) 698s LINESTRING (0 1, 1 1) 698s > p1 = st_point(c(0.1, -0.1)) 698s > p2 = st_point(c(0.1, 0.11)) 698s > p3 = st_point(c(0.1, 0.09)) 698s > p4 = st_point(c(0.1, 0.9)) 698s > p5 = st_point() 698s > 698s > (p = st_sfc(p1, p2, p3, p4, p5)) 698s POINT (0.1 -0.1) 698s Geometry set for 5 features (with 1 geometry empty) 698s Geometry type: POINT 698s Dimension: XY 698s Bounding box: xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 0.9 698s CRS: NA 698s > #st_nearest_points(p, l) 698s > n = try(st_nearest_feature(p,l)) 698s > if (!inherits(n, "try-error")) { 698s + print(st_nearest_points(p, l[n], pairwise = TRUE)) 698s + print(st_nearest_feature(p, l)) 698s + print(st_nearest_feature(p, st_sfc())) 698s + print(st_nearest_feature(st_sfc(), l)) 698s + } 698s Geometry set for 5 features (with 1 geometry empty) 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 1 698s CRS: NA 698s [1] 1 2 2 3 NA 698s [1] NA NA NA NA NA 698s integer(0) 698s > 698s > # can do centroid of empty geom: 698s > st_centroid(st_polygon()) 698s > 698s > #999: 698s > POINT (0.1 0.11) 698s POINT (0.1 0.09) 698s POINT (0.1 0.9) 698s POINT EMPTY 698s LINESTRING (0.1 -0.1, 0.1 0) 698s LINESTRING (0.1 0.11, 0.1 0.1) 698s LINESTRING (0.1 0.09, 0.1 0.1) 698s LINESTRING (0.1 0.9, 0.1 1) 698s LINESTRING EMPTY 698s POINT EMPTY 698s pt = data.frame(x=1:2, y=1:2,a=letters[1:2]) 698s > pt = st_as_sf(pt, coords=c("x","y")) 698s > 698s > bf =st_buffer(pt, dist=0.3) 698s > 698s > st_within(pt,bf, sparse=FALSE) 698s [,1] [,2] 698s [1,] TRUE FALSE 698s [2,] FALSE TRUE 698s > st_within(pt[1,], bf[1,], sparse = FALSE) 698s [,1] 698s [1,] TRUE 698s > st_relate(pt[1,], bf[1,], pattern = "T*F**F***", sparse = FALSE) 698s [,1] 698s [1,] TRUE 698s > 698s > sf:::is_symmetric(pattern = "010121010") 698s [1] TRUE 698s > sf:::is_symmetric(pattern = "010121021") 698s [1] FALSE 698s > 698s > st_intersects(st_point(0:1), st_point(2:3)) # sfg method 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: (empty) 698s > 698s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.7.0") > -1, silent = TRUE))) { 698s + ls = st_linestring(rbind(c(1,1), c(2,2), c(3,3))) 698s + print(st_reverse(ls)) 698s + print(st_reverse(st_sfc(ls))) 698s + print(st_reverse(st_sf(a = 2, geom = st_sfc(ls)))) 698s + } 698s LINESTRING (3 3, 2 2, 1 1) 698s Geometry set for 1 feature 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 1 ymin: 1 xmax: 3 ymax: 3 698s CRS: NA 698s LINESTRING (3 3, 2 2, 1 1) 698s Simple feature collection with 1 feature and 1 field 698s Geometry type: LINESTRING 698s Dimension: XY 698s Bounding box: xmin: 1 ymin: 1 xmax: 3 ymax: 3 698s CRS: NA 698s a geom 698s 1 2 LINESTRING (3 3, 2 2, 1 1) 698s > 698s > p = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) 698s > y = st_sfc(p) 698s > x = st_sfc(p + 1.001) 698s > 698s > x %>% st_set_precision(0) %>% st_intersects(y) 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: (empty) 698s > x %>% st_set_precision(10000) %>% st_intersects(y) 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: (empty) 698s > x %>% st_set_precision(1000) %>% st_intersects(y) 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: (empty) 698s > x %>% st_set_precision(501) %>% st_intersects(y) # no 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: (empty) 698s > x %>% st_set_precision(500) %>% st_intersects(y) # yes 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: 1 698s > x %>% st_set_precision(100) %>% st_intersects(y) 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: 1 698s > x %>% st_set_precision(10) %>% st_intersects(y) 698s Sparse geometry binary predicate list of length 1, where the predicate 698s was `intersects' 698s 1: 1 698s > 698s > p1 = st_point(0:1) 698s > p2 = st_point(2:1) 698s > p = st_sf(a = letters[1:8], geom = st_sfc(p1, p1, p2, p1, p1, p2, p2, p1)) 698s > st_equals(p) 698s Sparse geometry binary predicate list of length 8, where the predicate 698s was `equals' 698s 1: 1, 2, 4, 5, 8 698s 2: 1, 2, 4, 5, 8 698s 3: 3, 6, 7 698s 4: 1, 2, 4, 5, 8 698s 5: 1, 2, 4, 5, 8 698s 6: 3, 6, 7 698s 7: 3, 6, 7 698s 8: 1, 2, 4, 5, 8 698s > st_equals(p, remove_self = TRUE) 698s Sparse geometry binary predicate list of length 8, where the predicate 698s was `equals', with remove_self = TRUE 698s 1: 2, 4, 5, 8 698s 2: 1, 4, 5, 8 698s 3: 6, 7 698s 4: 1, 2, 5, 8 698s 5: 1, 2, 4, 8 698s 6: 3, 7 698s 7: 3, 6 698s 8: 1, 2, 4, 5 698s > (u = st_equals(p, retain_unique = TRUE)) 698s Sparse geometry binary predicate list of length 8, where the predicate 698s was `equals', with retain_unique = TRUE 698s 1: 2, 4, 5, 8 698s 2: 4, 5, 8 698s 3: 6, 7 698s 4: 5, 8 698s 5: 8 698s 6: 7 698s 7: (empty) 698s 8: (empty) 698s > # retain the records with unique geometries: 698s > p[-unlist(u),] 698s Simple feature collection with 2 features and 1 field 698s Geometry type: POINT 698s Dimension: XY 698s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 1 698s CRS: NA 698s a geom 698s 1 a POINT (0 1) 698s 3 c POINT (2 1) 698s > 698s BEGIN TEST graticule.R 699s 699s R version 4.3.2 (2023-10-31) -- "Eye Holes" 699s Copyright (C) 2023 The R Foundation for Statistical Computing 699s Platform: aarch64-unknown-linux-gnu (64-bit) 699s 699s R is free software and comes with ABSOLUTELY NO WARRANTY. 699s You are welcome to redistribute it under certain conditions. 699s Type 'license()' or 'licence()' for distribution details. 699s 699s R is a collaborative project with many contributors. 699s Type 'contributors()' for more information and 699s 'citation()' on how to cite R or R packages in publications. 699s 699s Type 'demo()' for some demos, 'help()' for on-line help, or 699s 'help.start()' for an HTML browser interface to help. 699s Type 'q()' to quit R. 699s 699s > if (require(maps, quietly = TRUE)) { 699s + m = map('usa', plot = FALSE, fill = TRUE) 699s + suppressPackageStartupMessages(library(sf)) 699s + m0 <- st_as_sfc(m) 699s + m <- st_as_sf(m) 699s + 699s + laea = st_crs("+proj=laea +lat_0=30 +lon_0=-95") # Lambert equal area 699s + m <- st_transform(st_as_sf(m), laea) 699s + 699s + bb = st_bbox(m) 699s + bbox = st_linestring(rbind(c( bb[1],bb[2]),c( bb[3],bb[2]),c( bb[3],bb[4]),c( bb[1],bb[4]),c( bb[1],bb[2]))) 699s + 699s + g = st_graticule(m) 699s + plot(m, xlim = 1.2 * c(-2450853.4, 2186391.9)) 699s + plot(g[1], add = TRUE, col = 'grey') 699s + plot(bbox, add = TRUE) 699s + points(g$x_start, g$y_start, col = 'red') 699s + points(g$x_end, g$y_end, col = 'blue') 699s + 699s + invisible(lapply(seq_len(nrow(g)), function(i) { 699s + if (g$type[i] == "N" && g$x_start[i] - min(g$x_start) < 1000) 699s + text(g[i,"x_start"], g[i,"y_start"], labels = parse(text = g[i,"degree_label"]), 699s + srt = g$angle_start[i], pos = 2, cex = .7) 699s + if (g$type[i] == "E" && g$y_start[i] - min(g$y_start) < 1000) 699s + text(g[i,"x_start"], g[i,"y_start"], labels = parse(text = g[i,"degree_label"]), 699s + srt = g$angle_start[i] - 90, pos = 1, cex = .7) 699s + if (g$type[i] == "N" && g$x_end[i] - max(g$x_end) > -1000) 699s + text(g[i,"x_end"], g[i,"y_end"], labels = parse(text = g[i,"degree_label"]), 699s + srt = g$angle_end[i], pos = 4, cex = .7) 699s + if (g$type[i] == "E" && g$y_end[i] - max(g$y_end) > -1000) 699s + text(g[i,"x_end"], g[i,"y_end"], labels = parse(text = g[i,"degree_label"]), 699s + srt = g$angle_end[i] - 90, pos = 3, cex = .7) 699s + })) 699s + 699s + plot(m, graticule = st_crs(4326)) 699s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 699s + # options(warn=2) 699s + g = st_graticule(nc, datum = st_crs(nc)) 699s + #g = st_graticule(nc) 699s + 699s + plot(nc[1], graticule = st_crs(nc)) 699s + 699s + plot(nc[1], graticule = st_crs(nc), axes = TRUE) 699s + 699s + g = st_graticule() 699s + 699s + if (require(ggplot2, quietly = TRUE) && utils::packageVersion("ggplot2") > "2.2.1") { 699s + ggplot() + geom_sf(data = st_set_crs(nc, NA_crs_)) # NA_crs_ for crs 699s + } 699s + 699s + library(maps) #421 699s + (wrld2 = st_as_sf(map('world2', plot=FALSE, fill=TRUE ))) 699s + try(plot(wrld2, graticule = TRUE)) 699s + } 705s > Warning message: 705s 705s package 'sf' was built under R version 4.3.3 706s BEGIN TEST grid.R 707s 707s R version 4.3.2 (2023-10-31) -- "Eye Holes" 707s Copyright (C) 2023 The R Foundation for Statistical Computing 707s Platform: aarch64-unknown-linux-gnu (64-bit) 707s 707s R is free software and comes with ABSOLUTELY NO WARRANTY. 707s You are welcome to redistribute it under certain conditions. 707s Type 'license()' or 'licence()' for distribution details. 707s 707s R is a collaborative project with many contributors. 707s Type 'contributors()' for more information and 707s 'citation()' on how to cite R or R packages in publications. 707s 707s Type 'demo()' for some demos, 'help()' for on-line help, or 707s 'help.start()' for an HTML browser interface to help. 707s Type 'q()' to quit R. 707s 707s > # MULTIPOLYGONS 707s > suppressPackageStartupMessages(library(sf)) 709s > library(grid) 709s Warning message: 709s package 'sf' was built under R version 4.3.3 709s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 709s > grid.newpage() 709s > # pushViewport(viewport(width = 0.8, height = 0.8)) 709s > pushViewport(st_viewport(nc)) 709s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 710s > 710s > # POLYGONS 710s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", type = 3) 710s > nc = st_read(system.file("shape/nc.shp", package="sf"), type = 3, quiet = TRUE) 710s > grid.newpage() 710s > pushViewport(st_viewport(nc)) 710s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 710s > 710s > # POINTS: 710s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 710s + data(meuse, package = "sp") 710s + meuse_sf = st_as_sf(meuse, coords = c("x", "y"), crs = 28992, agr = "constant") 710s + grid.newpage() 710s + pushViewport(st_viewport(meuse_sf)) 710s + invisible(lapply(st_geometry(meuse_sf), 710s + function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 710s + } 711s > 711s > # MULTIPOINTS 711s > mp = st_multipoint(cbind(runif(100), runif(100))) 711s > grid.newpage() 711s > pushViewport(st_viewport(mp)) 711s > grid.draw(st_as_grob(mp, gp = gpar(fill = 'red'))) 711s > 711s > # LINESTRING 711s > ls = st_linestring(cbind(1:10, rnorm(10))) 711s > grid.newpage() 711s > pushViewport(st_viewport(ls)) 711s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red'))) 711s > 711s > # MULTILINESTRING 711s > ls = st_multilinestring(list(cbind(1:10, 5+rnorm(10)), cbind(1:10, rnorm(10)), cbind(1:10, -5+rnorm(10)))) 711s > grid.newpage() 711s > pushViewport(st_viewport(ls)) 711s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red'))) 711s > 711s > if (require(sp, quietly = TRUE)) { 711s + # POINTS, right aspect in Long/Lat: 711s + meuse_ll = st_transform(meuse_sf, 4326) 711s + grid.newpage() 711s + pushViewport(st_viewport(meuse_ll)) 711s + invisible(lapply(st_geometry(meuse_ll), 711s + function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 711s + 711s + # WRONG aspect: 711s + st_crs(meuse_ll) = NA 711s + grid.newpage() 711s + pushViewport(st_viewport(meuse_ll)) 711s + invisible(lapply(st_geometry(meuse_ll), 711s + function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red'))))) 711s + } 711s > 711s > gc = st_geometrycollection(list(st_point(0:1), st_linestring(matrix(1:4,2)))) 711s > grb = st_as_grob(gc) 711s > 712s BEGIN TEST maps.R 712s 712s R version 4.3.2 (2023-10-31) -- "Eye Holes" 712s Copyright (C) 2023 The R Foundation for Statistical Computing 712s Platform: aarch64-unknown-linux-gnu (64-bit) 712s 712s R is free software and comes with ABSOLUTELY NO WARRANTY. 712s You are welcome to redistribute it under certain conditions. 712s Type 'license()' or 'licence()' for distribution details. 712s 712s R is a collaborative project with many contributors. 712s Type 'contributors()' for more information and 712s 'citation()' on how to cite R or R packages in publications. 712s 712s Type 'demo()' for some demos, 'help()' for on-line help, or 712s 'help.start()' for an HTML browser interface to help. 712s Type 'q()' to quit R. 712s 712s > suppressPackageStartupMessages(library(sf)) 715s Warning message: 715s package 'sf' was built under R version 4.3.3 715s > 715s > if (require(maps, quietly = TRUE)) { 715s + m = map(xlim = c(4,9), ylim = c(48,55), fill = TRUE, plot = FALSE) 715s + st_as_sf(m) 715s + m = map(xlim = c(4,9), ylim = c(48,55), plot = FALSE) 715s + st_as_sf(m, fill = FALSE) 715s + st_as_sf(map(), fill = FALSE) 715s + st_as_sf(map(fill = TRUE)) 715s + st_as_sf(map(), fill = FALSE, group = FALSE) 715s + st_as_sf(map(fill = TRUE), group = FALSE) 715s + } 718s Simple feature collection with 1627 features and 1 field 718s Geometry type: MULTIPOLYGON 718s Dimension: XY 718s Bounding box: xmin: -180 ymin: -85.19218 xmax: 190.2708 ymax: 83.59961 718s Geodetic CRS: +proj=longlat +ellps=clrk66 +no_defs +type=crs 718s First 10 features: 718s ID 718s Aruba Aruba 718s Afghanistan Afghanistan 718s Angola Angola 718s Angola:Cabinda Angola:Cabinda 718s Anguilla Anguilla 718s Albania Albania 718s Finland:Aland Islands:Foglo Finland:Aland Islands:Foglo 718s Finland:Aland Islands:Eckero Finland:Aland Islands:Eckero 718s Finland:Aland Islands:Fasta Aland Finland:Aland Islands:Fasta Aland 718s Andorra Andorra 718s geom 718s Aruba MULTIPOLYGON (((-69.89912 1... 718s Afghanistan MULTIPOLYGON (((74.89131 37... 718s Angola MULTIPOLYGON (((23.9665 -10... 718s Angola:Cabinda MULTIPOLYGON (((12.21367 -5... 718s Anguilla MULTIPOLYGON (((-63.00122 1... 718s Albania MULTIPOLYGON (((20.06396 42... 718s Finland:Aland Islands:Foglo MULTIPOLYGON (((20.61133 60... 718s Finland:Aland Islands:Eckero MULTIPOLYGON (((19.6623 60.... 718s Finland:Aland Islands:Fasta Aland MULTIPOLYGON (((19.98955 60... 718s Andorra MULTIPOLYGON (((1.706055 42... 718s > 719s BEGIN TEST plot.R 719s 719s R version 4.3.2 (2023-10-31) -- "Eye Holes" 719s Copyright (C) 2023 The R Foundation for Statistical Computing 719s Platform: aarch64-unknown-linux-gnu (64-bit) 719s 719s R is free software and comes with ABSOLUTELY NO WARRANTY. 719s You are welcome to redistribute it under certain conditions. 719s Type 'license()' or 'licence()' for distribution details. 719s 719s R is a collaborative project with many contributors. 719s Type 'contributors()' for more information and 719s 'citation()' on how to cite R or R packages in publications. 719s 719s Type 'demo()' for some demos, 'help()' for on-line help, or 719s 'help.start()' for an HTML browser interface to help. 719s Type 'q()' to quit R. 719s 719s > suppressPackageStartupMessages(library(sf)) 722s Warning message: 722s > options(rgdal_show_exportToProj4_warnings = "none") 722s > 722s > if (require(dplyr, quietly = TRUE)) { 722s + 722s + # plot linestrings: 722s + l1 = st_linestring(matrix(runif(6)-0.5,,2)) 722s + l2 = st_linestring(matrix(runif(6)-0.5,,2)) 722s + l3 = st_linestring(matrix(runif(6)-0.5,,2)) 722s + s = st_sf(a=2:4, b=st_sfc(l1,l2,l3)) 722s + plot(s, col = s$a, axes = FALSE) 722s + plot(s, col = s$a) 722s + if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 722s + attr(s$b, "proj4string") = sp::CRS("+proj=longlat +ellps=WGS84 +no_defs")@projargs 722s + } 722s + plot(s, col = s$a, axes = TRUE) 722s package 'sf' was built under R version 4.3.3 722s + plot(s, col = s$a, lty = s$a, lwd = s$a, pch = s$a, type = 'b') 722s + l4 = st_linestring(matrix(runif(6),,2)) 722s + plot(st_sf(a=1,b=st_sfc(l4)), add = TRUE) 722s + # plot multilinestrings: 722s + ml1 = st_multilinestring(list(l1, l2)) 722s + ml2 = st_multilinestring(list(l3, l4)) 722s + ml = st_sf(a = 2:3, b = st_sfc(ml1, ml2)) 722s + plot(ml, col = ml$a, lty = ml$a, lwd = ml$a, pch = ml$a, type = 'b') 722s + # plot points: 722s + p1 = st_point(c(1,2)) 722s + p2 = st_point(c(3,3)) 722s + p3 = st_point(c(3,0)) 722s + p = st_sf(a=2:4, b=st_sfc(p1,p2,p3)) 722s + plot(p, col = s$a, axes = TRUE) 722s + plot(p, col = s$a) 722s + plot(p, col = p$a, pch = p$a, cex = p$a, bg = s$a, lwd = 2, lty = 2, type = 'b') 722s + p4 = st_point(c(2,2)) 722s + plot(st_sf(a=1, st_sfc(p4)), add = TRUE) 722s + # multipoints: 722s + mp1 = st_multipoint(matrix(1:4,2)) 722s + mp2 = st_multipoint(matrix(5:8,2)) 722s + mp = st_sf(a = 2:3, b = st_sfc(mp1, mp2)) 722s + plot(mp) 722s + plot(mp, col = mp$a, pch = mp$a, cex = mp$a, bg = mp$a, lwd = mp$a, lty = mp$a, type = 'b') 722s + # polygon: 722s + outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 722s + hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 722s + hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 722s + pl1 = st_polygon(list(outer, hole1, hole2)) 722s + pl2 = st_polygon(list(outer+10, hole1+10, hole2+10)) 722s + po = st_sf(a = 2:3, st_sfc(pl1,pl2)) 722s + plot(po, col = po$a, border = rev(po$a), lwd=3) 722s + # multipolygon 722s + r10 = matrix(rep(c(0,10),each=5),5) 722s + pl1 = list(outer, hole1, hole2) 722s + pl2 = list(outer+10, hole1+10, hole2+10) 722s + pl3 = list(outer+r10, hole1+r10, hole2+r10) 722s + mpo1 = st_multipolygon(list(pl1,pl2)) 722s + mpo2 = st_multipolygon(list(pl3)) 722s + mpo = st_sf(a=2:3, b=st_sfc(mpo1,mpo2)) 722s + plot(mpo, col = mpo$a, border = rev(mpo$a), lwd = 2) 722s + # geometrycollection: 722s + gc1 = st_geometrycollection(list(mpo1, st_point(c(21,21)), l1 * 2 + 21)) 722s + gc2 = st_geometrycollection(list(mpo2, l2 - 2, l3 - 2, st_point(c(-1,-1)))) 722s + gc = st_sf(a=2:3, b = st_sfc(gc1,gc2)) 722s + plot(gc, cex = gc$a, col = gc$a, border = rev(gc$a) + 2, lwd = 2) 722s + 722s + plot(gc1) 722s + 722s + plot(st_sfc(mp1, mpo1)) 722s + 722s + # color ramp 722s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 722s + plot(nc) 722s + plot(nc, axes = TRUE) 722s + plot(nc, col="lightgrey") 722s + plot(st_centroid(nc), add = TRUE, col = 1) 722s + if ("geometry" %in% names(nc)) { 722s + nc %>% 722s + select(geometry) %>% 722s + plot() 722s + } 722s + 722s + nc$f = cut(nc[[1]], 5) 722s + plot(nc["f"], key.pos = 1) 722s + plot(nc[1], key.pos = 1) 722s + 722s + # test background map plotting: 722s + load("bgmap.rda") 722s + merc = st_crs(3857) 722s + WGS84 = st_crs(4326) 722s + nc = st_transform(nc, WGS84) 722s + ## ggmap: 722s + #library(ggmap) 722s + #bgMap = get_map(unname(st_bbox(nc)), source = "google", zoom = 8) 722s + plot(st_transform(nc[1], merc), bgMap = bgMap) 722s + 722s + # RgoogleMaps: 722s + #library(RgoogleMaps) 722s + #center = c(mean(st_bbox(nc)[c(2,4)]), mean(st_bbox(nc)[c(1,3)])) 722s + #g = GetMap(center=center, zoom=6) # google 722s + par(mar = c(0,0,1,0)) 722s + plot(st_transform(nc, merc), bgMap = g) 722s + 722s + m = st_make_grid() 722s + st_crs(m) = NA_crs_ 722s + m = st_segmentize(m, 2) 722s + st_crs(m) = 4326 722s + plot(m, axes = TRUE) 722s + g = st_transform(m, st_crs("+proj=ortho +lat_0=30 +lon_0=45"), check = TRUE) 722s + plot(g, axes = TRUE) 722s + 722s + nc[[1]] = NA 722s + nc[[10]] = 1 722s + plot(nc, pal = rainbow, nbreaks = 3) 722s + plot(nc, pal = rainbow, breaks = "jenks", nbreaks = 3) 722s + plot(nc, pal = rainbow, breaks = (0:10)/3) 722s + 722s + # logz: 722s + nc$e = 10^(nc$SID74) 722s + plot(nc["e"], logz = TRUE) 722s + 722s + # shared key: 722s + plot(nc[c("SID74", "SID79")], key.pos = -1) 722s + plot(nc[c("BIR74", "BIR79")], key.pos = 1, logz=TRUE) 722s + } 722s 722s Attaching package: 'dplyr' 722s 722s The following objects are masked from 'package:stats': 722s 722s filter, lag 722s 722s The following objects are masked from 'package:base': 722s 722s intersect, setdiff, setequal, union 722s 737s > 737s There were 13 warnings (use warnings() to see them) 737s BEGIN TEST read.R 737s 737s R version 4.3.2 (2023-10-31) -- "Eye Holes" 737s Copyright (C) 2023 The R Foundation for Statistical Computing 737s Platform: aarch64-unknown-linux-gnu (64-bit) 737s 737s R is free software and comes with ABSOLUTELY NO WARRANTY. 737s You are welcome to redistribute it under certain conditions. 737s Type 'license()' or 'licence()' for distribution details. 737s 737s R is a collaborative project with many contributors. 737s Type 'contributors()' for more information and 737s 'citation()' on how to cite R or R packages in publications. 737s 737s Type 'demo()' for some demos, 'help()' for on-line help, or 737s 'help.start()' for an HTML browser interface to help. 737s Type 'q()' to quit R. 737s 737s > Sys.setenv(TZ="UTC") 737s > suppressPackageStartupMessages(library(sf)) 740s Warning message: 740s > if ("GPKG" %in% st_drivers()$name) { 740s + package 'sf' was built under R version 4.3.3 740s tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", crs = 4267, quiet = TRUE) 740s + tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name 740s + } 740s > 740s > tst = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) # no layer specified 740s > 740s > # data from https://github.com/edzer/sfr/issues/6 740s > tst = st_read(system.file("shape/storms_xyz.shp", package="sf"), quiet = TRUE) 740s > class(st_geometry(tst)) 740s [1] "sfc_LINESTRING" "sfc" 740s > class(st_geometry(tst)[[1]]) 740s [1] "XYZ" "LINESTRING" "sfg" 740s > tst = st_read(system.file("shape/storms_xyzm.shp", package="sf"), quiet = TRUE) 740s > class(st_geometry(tst)) 740s [1] "sfc_LINESTRING" "sfc" 740s > class(st_geometry(tst)[[1]]) 740s [1] "XYM" "LINESTRING" "sfg" 740s > tst = st_read(system.file("shape/storms_xyz_feature.shp", package="sf"), quiet = TRUE) 740s > class(st_geometry(tst)) 740s [1] "sfc_LINESTRING" "sfc" 740s > class(st_geometry(tst)[[1]]) 740s [1] "XYZ" "LINESTRING" "sfg" 740s > tst = st_read(system.file("shape/storms_xyzm_feature.shp", package="sf"), quiet = TRUE) 740s > class(st_geometry(tst)) 740s [1] "sfc_LINESTRING" "sfc" 740s > class(st_geometry(tst)[[1]]) 740s [1] "XYM" "LINESTRING" "sfg" 740s > 740s > if ("GPKG" %in% st_drivers()$name) { # read Int64 740s + print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE)$AWATER) 740s + print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE, int64_as_string = TRUE)$AWATER) 740s + } 740s [1] 1028678842 740s [1] "1028678842" 740s > 740s > # see https://github.com/edzer/sfr/issues/45 : 740s > if ("OSM" %in% st_drivers()$name && Sys.info()['sysname'] != "Darwin") { 740s + osm = system.file("osm/overpass.osm", package="sf") 740s + print(st_layers(osm)) 740s + suppressWarnings(print(st_layers(osm, do_count = TRUE))) 740s + suppressWarnings(print(st_read(osm, "multipolygons", quiet = TRUE))) 740s + } 741s Driver: OSM 741s Available layers: 741s layer_name geometry_type features fields crs_name 741s 1 points Point NA 10 WGS 84 741s 2 lines Line String NA 10 WGS 84 741s 3 multilinestrings Multi Line String NA 4 WGS 84 741s 4 multipolygons Multi Polygon NA 25 WGS 84 741s 5 other_relations Geometry Collection NA 4 WGS 84 741s Driver: OSM 741s Available layers: 741s layer_name geometry_type features fields crs_name 741s 1 points Point 0 10 WGS 84 741s 2 lines Line String 0 10 WGS 84 741s 3 multilinestrings Multi Line String 0 4 WGS 84 741s 4 multipolygons Multi Polygon 3 25 WGS 84 741s 5 other_relations Geometry Collection 0 4 WGS 84 741s Simple feature collection with 3 features and 25 fields 741s Geometry type: MULTIPOLYGON 741s Dimension: XY 741s Bounding box: xmin: -1.556254 ymin: 53.79519 xmax: -1.550716 ymax: 53.80341 741s Geodetic CRS: WGS 84 741s osm_id osm_way_id name type aeroway amenity admin_level barrier boundary 741s 1 263958111 741s 2 301461256 741s 3 462227487 741s building craft geological historic land_area landuse leisure man_made 741s 1 park 741s 2 park 741s 3 park 741s military natural office place shop sport tourism other_tags 741s 1 741s 2 741s 3 741s geometry 741s 1 MULTIPOLYGON (((-1.550719 5... 741s 2 MULTIPOLYGON (((-1.555763 5... 741s 3 MULTIPOLYGON (((-1.551502 5... 741s > 741s > # layer opening option: 741s > st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE, 741s + options = c("ADJUST_TYPE=YES", "ENCODING=CPL_ENC_UTF8")) 741s Simple feature collection with 100 features and 14 fields 741s Geometry type: MULTIPOLYGON 741s Dimension: XY 741s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 741s Geodetic CRS: NAD27 741s First 10 features: 741s AREA PERIMETER CNTY_ CNTY_ID NAME FIPS FIPSNO CRESS_ID BIR74 SID74 741s 1 0.114 1.442 1825 1825 Ashe 37009 37009 5 1091 1 741s 2 0.061 1.231 1827 1827 Alleghany 37005 37005 3 487 0 741s 3 0.143 1.630 1828 1828 Surry 37171 37171 86 3188 5 741s 4 0.070 2.968 1831 1831 Currituck 37053 37053 27 508 1 741s 5 0.153 2.206 1832 1832 Northampton 37131 37131 66 1421 9 741s 6 0.097 1.670 1833 1833 Hertford 37091 37091 46 1452 7 741s 7 0.062 1.547 1834 1834 Camden 37029 37029 15 286 0 741s 8 0.091 1.284 1835 1835 Gates 37073 37073 37 420 0 741s 9 0.118 1.421 1836 1836 Warren 37185 37185 93 968 4 741s 10 0.124 1.428 1837 1837 Stokes 37169 37169 85 1612 1 741s NWBIR74 BIR79 SID79 NWBIR79 geometry 741s 1 10 1364 0 19 MULTIPOLYGON (((-81.47276 3... 741s 2 10 542 3 12 MULTIPOLYGON (((-81.23989 3... 741s 3 208 3616 6 260 MULTIPOLYGON (((-80.45634 3... 741s 4 123 830 2 145 MULTIPOLYGON (((-76.00897 3... 741s 5 1066 1606 3 1197 MULTIPOLYGON (((-77.21767 3... 741s 6 954 1838 5 1237 MULTIPOLYGON (((-76.74506 3... 741s 7 115 350 2 139 MULTIPOLYGON (((-76.00897 3... 741s 8 254 594 2 371 MULTIPOLYGON (((-76.56251 3... 741s 9 748 1190 2 844 MULTIPOLYGON (((-78.30876 3... 741s 10 160 2038 5 176 MULTIPOLYGON (((-80.02567 3... 741s > 741s > x <- st_sf(a = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))) 741s > 741s > Error : Open failed. 741s 741s try(st_layers("foo")) # cannot open datasource 741s Cannot open data source foo 741s > try(st_read("foo")) # cannot open datasource 741s Error : Cannot open "foo"; The file doesn't seem to exist. 741s > try(st_read("x.gpkg", "xyz")) # cannot open layer 741s Error : Cannot open "x.gpkg"; The file doesn't seem to exist. 741s > try(st_write(c("foo", "bar"))) 741s Error in UseMethod("st_write") : 741s no applicable method for 'st_write' applied to an object of class "character" 741s > try(st_write(x, c("foo", "bar"))) 741s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 741s Error in guess_driver(dns) : length(dsn) == 1 is not TRUE 741s > try(st_write(x, "foo", driver = "foo")) 741s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 741s driver `foo' not available. 741s > Error : Driver not available. 741s 741s if (Sys.getenv("USER") == "travis") { 741s + try(st_write(x, "/x", driver = "ESRI Shapefile")) 741s + st_write(x, "xxx.gpkg") 741s + st_write(x, "xxx.gpkg", append = TRUE, quiet = FALSE) # appends to layer 741s + y <- st_sf(b = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))) 741s + try(st_write(y, "xxx.gpkg")) 741s + } 741s > 741s > geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))) 741s > st_write(geom, "geom.gpkg") 741s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 741s Writing layer `geom' to data source `geom.gpkg' using driver `GPKG' 741s Writing 2 features with 0 fields and geometry type Unknown (any). 741s > st_write(geom, "geom1.gpkg", layer = "foo") 741s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 741s Writing layer `foo' to data source `geom1.gpkg' using driver `GPKG' 741s Writing 2 features with 0 fields and geometry type Unknown (any). 741s > 741s > df <- data.frame( 741s + a = c(0, 1, NA, -Inf, Inf), 741s + b = c("a", "b", NA, "c", ""), 741s + c = c(as.Date("2001-01-01"), 741s + as.Date(c(NA, -99, 0, 1), origin = "1970-01-01")), 741s + d = c(as.POSIXct("2001-01-01"), 741s + as.POSIXct(c(NA, -99, 0, 1), origin = "1970-01-01")), 741s + x = 1:5, 741s + y = 1:5) 741s > 741s > x = st_as_sf(df, coords = c("x", "y")) 741s > 741s > if ("GPKG" %in% st_drivers()$name) { 741s + st_write(x, "x2.gpkg", quiet = TRUE) 741s + y = st_read("x2.gpkg", quiet = TRUE) 741s + print(y) 741s + } 741s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS 741s Simple feature collection with 5 features and 4 fields 741s Geometry type: POINT 741s Dimension: XY 741s Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 5 741s Projected CRS: Undefined Cartesian SRS with unknown unit 741s a b c d geom 741s 1 0 a 2001-01-01 2001-01-01 00:00:00 POINT (1 1) 741s 2 1 b POINT (2 2) 741s 3 NA 1969-09-24 1969-12-31 23:58:21 POINT (3 3) 741s 4 -Inf c 1970-01-01 1970-01-01 00:00:00 POINT (4 4) 741s 5 Inf 1970-01-02 1970-01-01 00:00:01 POINT (5 5) 741s > 741s > if ("SQLite" %in% st_drivers()$name && require(RSQLite)) { 741s + db = system.file("sqlite/meuse.sqlite", package = "sf") 741s + dbcon <- dbConnect(dbDriver("SQLite"), db) 741s + m = dbReadTable(dbcon, "meuse.sqlite") 741s + m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb 741s + print(st_sf(m), n = 3) 741s + # or: 741s + (s = st_read(dbcon, "meuse.sqlite"))[1:3,] 741s + dbDisconnect(dbcon) 741s + 741s + db = system.file("sqlite/nc.sqlite", package = "sf") 741s + dbcon <- dbConnect(dbDriver("SQLite"), db) 741s + m = dbReadTable(dbcon, "nc.sqlite") 741s + m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb 741s + print(st_sf(m), n = 3) 741s + dbDisconnect(dbcon) 741s + 741s + db = system.file("sqlite/b.sqlite", package = "sf") # has an INT8 field 741s + b = st_read(db, quiet = TRUE) 741s + print(b) 741s + b = st_read(db, int64_as_string = TRUE, quiet = TRUE) 741s + print(b) 741s + 741s + if (.Platform$endian == "little") { 741s + db = system.file("sqlite/test3.sqlite", package = "sf") 741s + dbcon <- dbConnect(dbDriver("SQLite"), db) 741s + m = dbReadTable(dbcon, "HighWays") 741s + m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb 741s + print(st_sf(m), n = 3) 741s + m = dbReadTable(dbcon, "Towns") 741s + m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb 741s + print(st_sf(m), n = 3) 741s + m = dbReadTable(dbcon, "Regions") 741s + m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb 741s + print(st_sf(m), n = 3) 741s + } 741s + } 741s Loading required package: RSQLite 742s Simple feature collection with 155 features and 13 fields 742s Geometry type: POINT 742s Dimension: XY 742s Bounding box: xmin: 178605 ymin: 329714 xmax: 181390 ymax: 333611 742s CRS: NA 742s First 3 features: 742s ogc_fid cadmium copper lead zinc elev dist om ffreq soil lime 742s 1 1 11.7 85 299 1022 7.909 0.00135803 13.6 1 1 1 742s 2 2 8.6 81 277 1141 6.983 0.01222430 14.0 1 1 1 742s 3 3 6.5 68 199 640 7.800 0.10302900 13.0 1 1 1 742s landuse dist.m GEOMETRY 742s 1 Ah 50 POINT (181072 333611) 742s 2 Ah 30 POINT (181025 333558) 742s 3 Ah 150 POINT (181165 333537) 742s Simple feature collection with 100 features and 15 fields 742s Geometry type: MULTIPOLYGON 742s Dimension: XY 742s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 742s CRS: NA 742s First 3 features: 743s ogc_fid area perimeter cnty_ cnty_id name fips fipsno cress_id bir74 743s 1 1 0.114 1.442 1825 1825 Ashe 37009 37009 5 1091 743s 2 2 0.061 1.231 1827 1827 Alleghany 37005 37005 3 487 743s 3 3 0.143 1.630 1828 1828 Surry 37171 37171 86 3188 743s sid74 nwbir74 bir79 sid79 nwbir79 GEOMETRY 743s 1 1 10 1364 0 19 MULTIPOLYGON (((-81.47276 3... 743s 2 0 10 542 3 12 MULTIPOLYGON (((-81.23989 3... 743s 3 5 208 3616 6 260 MULTIPOLYGON (((-80.45634 3... 743s Integer64 values larger than 9.0072e+15 lost significance after conversion to double; 743s use argument int64_as_string = TRUE to import them lossless, as character 743s Simple feature collection with 1 feature and 2 fields 743s Geometry type: POINT 743s Dimension: XY 743s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 743s CRS: NA 743s a bigint GEOMETRY 743s 1 1 4.611686e+18 POINT (0 1) 743s Simple feature collection with 1 feature and 2 fields 743s Geometry type: POINT 743s Dimension: XY 743s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 743s CRS: NA 743s a bigint GEOMETRY 743s 1 1 4611686018427387904 POINT (0 1) 743s Simple feature collection with 10 features and 2 fields 743s Geometry type: LINESTRING 743s Dimension: XY 743s Bounding box: xmin: 645003 ymin: 4822568 xmax: 748805.6 ymax: 4992001 743s Projected CRS: WGS 84 / UTM zone 32N 743s First 3 features: 743s PK_UID Name Geometry 743s 1 1 Unknown LINESTRING (668540.7 485826... 743s 2 2 Unknown LINESTRING (671365.9 485417... 743s 3 3 Unknown LINESTRING (671417.6 485417... 743s Simple feature collection with 8101 features and 6 fields 743s Geometry type: POINT 743s Dimension: XY 743s Bounding box: xmin: 319224 ymin: 3934674 xmax: 1308585 ymax: 5214373 743s Projected CRS: WGS 84 / UTM zone 32N 743s First 3 features: 743s PK_UID Name Peoples LocalCounc County Region 743s 1 1 Brozolo 435 1 0 0 743s 2 2 Campiglione-Fenile 1284 1 0 0 743s 3 3 Canischio 274 1 0 0 743s Geometry 743s 1 POINT (427002.8 4996361) 743s 2 POINT (367470.5 4962414) 743s 3 POINT (390084.1 5025552) 743s Simple feature collection with 10 features and 2 fields 743s Geometry type: MULTIPOLYGON 743s Dimension: XY 743s Bounding box: xmin: 378359.8 ymin: 4198234 xmax: 1211486 ymax: 5036803 743s Projected CRS: WGS 84 / UTM zone 32N 743s First 3 features: 743s PK_UID Name Geometry 743s 1 1 VENETO MULTIPOLYGON (((752912.3 50... 743s 2 2 VENETO MULTIPOLYGON (((751705.5 50... 743s 3 3 VENETO MULTIPOLYGON (((766247.8 50... 743s > 743s > csv = system.file("csv/pt.csv", package = "sf") 743s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_real_) 743s [1] TRUE 743s > identical(st_read(quiet = TRUE, csv, int64_as_string = TRUE, stringsAsFactors = FALSE, 743s + options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_character_) 743s [1] TRUE 743s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int32[3], NA_integer_) 743s [1] TRUE 743s > 743s > if ("GML" %in% st_drivers()$name) { 743s + gml = system.file("gml/fmi_test.gml", package = "sf") 743s + print(dim(st_read(gml, quiet = TRUE, use_stream = FALSE))) 743s + gml = system.file("gml/20170930_OB_530964_UKSH.xml.gz", package = "sf") 743s + print(dim(st_read(gml, layer = "Parcely", quiet = TRUE, use_stream = FALSE))) 743s + print(dim(st_read(gml, layer = "Parcely", int64_as_string=TRUE, quiet = TRUE, use_stream = FALSE))) 743s + } 743s [1] 22 11 743s [1] 644 25 744s [1] 644 25 744s Warning messages: 744s 1: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet, : 744s GDAL Message 1: Field with same name (identifier) already exists in (PointTimeSeriesObservation). Skipping newer ones 744s > 2: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet, : 744s GDAL Message 1: Field with same name (name) already exists in (PointTimeSeriesObservation). Skipping newer ones 744s 744s > # logical: 744s > if ("GPKG" %in% st_drivers()$name) { 744s + tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name 744s + tst$bool = tst$NWBIR79 > 800 # logical 744s + tst$bool[1:3] = NA 744s + st_write(tst, "tst__.gpkg") 744s + tst2 = st_read("tst__.gpkg") 744s + print(identical(tst$bool, tst2$bool)) 744s + } 744s Writing layer `tst__' to data source `tst__.gpkg' using driver `GPKG' 744s Writing 100 features with 15 fields and geometry type Multi Polygon. 744s Reading layer `tst__' from data source 744s `/tmp/autopkgtest.bBAPcr/autopkgtest_tmp/tst__.gpkg' using driver `GPKG' 744s Simple feature collection with 100 features and 15 fields 744s Geometry type: MULTIPOLYGON 744s Dimension: XY 744s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 744s Geodetic CRS: NAD27 744s [1] TRUE 744s > 744s > # spatial filter: 744s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 744s > wkt = st_as_text(st_geometry(nc[1,])) 744s > wkt 744s [1] "MULTIPOLYGON (((-81.47276 36.23436, -81.54084 36.27251, -81.56198 36.27359, -81.63306 36.34069, -81.74107 36.39178, -81.69828 36.47178, -81.7028 36.51934, -81.67 36.58965, -81.3453 36.57286, -81.34754 36.53791, -81.32478 36.51368, -81.31332 36.4807, -81.26624 36.43721, -81.26284 36.40504, -81.24069 36.37942, -81.23989 36.36536, -81.26424 36.35241, -81.32899 36.3635, -81.36137 36.35316, -81.36569 36.33905, -81.35413 36.29972, -81.36745 36.2787, -81.40639 36.28505, -81.41233 36.26729, -81.43104 36.26072, -81.45289 36.23959, -81.47276 36.23436)))" 744s > nc_filtered = read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = wkt) 744s > try(read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = "wrong")) 744s Cannot create geometry from: wrong 744s > Error : wkt parse error. 744s 744s nc_filtered$NAME 744s [1] "Watauga" "Ashe" "Wilkes" "Alleghany" 744s > 744s BEGIN TEST roundtrip.R 744s 744s R version 4.3.2 (2023-10-31) -- "Eye Holes" 744s Copyright (C) 2023 The R Foundation for Statistical Computing 744s Platform: aarch64-unknown-linux-gnu (64-bit) 744s 744s R is free software and comes with ABSOLUTELY NO WARRANTY. 744s You are welcome to redistribute it under certain conditions. 744s Type 'license()' or 'licence()' for distribution details. 744s 744s R is a collaborative project with many contributors. 744s Type 'contributors()' for more information and 744s 'citation()' on how to cite R or R packages in publications. 744s 744s Type 'demo()' for some demos, 'help()' for on-line help, or 744s 'help.start()' for an HTML browser interface to help. 744s Type 'q()' to quit R. 744s 744s > #library(rgdal2) 744s > #openOGRLayer("PG:dbname=postgis" , "meuse2") 744s > 744s > suppressPackageStartupMessages(library(sf)) 747s > options(rgdal_show_exportToProj4_warnings = "none") 747s Warning message: 747s package 'sf' was built under R version 4.3.3 747s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 747s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 747s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 747s > pol1 = list(outer, hole1, hole2) 747s > pol2 = list(outer + 12, hole1 + 12) 747s > pol3 = list(outer + 24) 747s > mp = list(pol1,pol2,pol3) 747s > mp1 = st_multipolygon(mp) 747s > sf = st_sf(a=1, st_sfc(mp1)) 747s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 747s + a = as(sf, "Spatial") 747s + print(class(a)) 747s + b = st_as_sf(a) 747s + a2 = as(a, "SpatialPolygonsDataFrame") 747s + print(all.equal(a, a2)) # round-trip 747s + 747s + b1 = as(a, "sf") 747s + print(all.equal(b, b1)) 747s + b = st_as_sfc(a) 747s + b1 = as(a, "sfc") 747s + print(all.equal(b, b1)) 747s + } 748s [1] "SpatialPolygonsDataFrame" 748s attr(,"package") 748s [1] "sp" 748s [1] TRUE 748s [1] TRUE 748s [1] TRUE 748s > 748s > # SpatialMultiPoints 748s > if (require(sp, quietly = TRUE)) { 748s + suppressWarnings(RNGversion("3.5.3")) 748s + set.seed(1331) 748s + # example(SpatialMultiPoints, ask = FALSE, echo = FALSE) # loads mpdf 748s + cl1 = cbind(rnorm(3, 10), rnorm(3, 10)) 748s + cl2 = cbind(rnorm(5, 10), rnorm(5, 0)) 748s + cl3 = cbind(rnorm(7, 0), rnorm(7, 10)) 748s + mpdf = SpatialMultiPointsDataFrame(list(a=cl1, b=cl2, c=cl3), data.frame(a = 1:3, row.names=c("a", "b", "c"))) 748s + m = st_as_sf(mpdf) 748s + all.equal(as(m, "Spatial"), mpdf) # TRUE 748s + 748s + demo(meuse, ask = FALSE, echo = FALSE) 748s + #meuse = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 748s + pol.grd = as(meuse.grid, "SpatialPolygonsDataFrame") 748s + #meuse.grd = spTransform(meuse.grid, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 748s + #pol.grd = spTransform(pol.grd, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 748s + #meuse.area = spTransform(meuse.area, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 748s + #meuse.riv = spTransform(meuse.riv, CRS("+proj=longlat +ellps=WGS84 +no_defs")) 748s + #summary(st_as_sf(meuse)) 748s + #summary(st_as_sf(meuse.grd)) 748s + #x <- st_as_sf(meuse.grid) # don't print: CRS variations. 748s + #summary(st_as_sf(meuse.area)) 748s + #summary(st_as_sf(meuse.riv)) 748s + #summary(st_as_sf(as(meuse.riv, "SpatialLines"))) 748s + #summary(st_as_sf(pol.grd)) 748s + #summary(st_as_sf(as(pol.grd, "SpatialLinesDataFrame"))) 748s + 748s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", quiet = TRUE) 748s + all.equal(nc, st_as_sf(as(nc, "Spatial"))) 748s + st_crs(nc) == st_crs(st_as_sf(as(nc, "Spatial"))) 748s + 748s + detach("package:sp") 748s + } 751s > 751s BEGIN TEST sample.R 751s 751s R version 4.3.2 (2023-10-31) -- "Eye Holes" 751s Copyright (C) 2023 The R Foundation for Statistical Computing 751s Platform: aarch64-unknown-linux-gnu (64-bit) 751s 751s R is free software and comes with ABSOLUTELY NO WARRANTY. 751s You are welcome to redistribute it under certain conditions. 751s Type 'license()' or 'licence()' for distribution details. 751s 751s R is a collaborative project with many contributors. 751s Type 'contributors()' for more information and 751s 'citation()' on how to cite R or R packages in publications. 751s 751s Type 'demo()' for some demos, 'help()' for on-line help, or 751s 'help.start()' for an HTML browser interface to help. 751s Type 'q()' to quit R. 751s 751s > suppressPackageStartupMessages(library(sf)) 754s Warning message: 754s package 'sf' was built under R version 4.3.3 754s > bb = st_bbox(c(xmin=0, ymin=1, xmax=3, ymax=2)) 754s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons") 754s > plot(xx, border = 'green', main = "pointy topped") 754s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points") 754s > plot(x, add = TRUE) 754s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners") 754s > plot(x, col = 'orange', add = TRUE) 754s > plot(st_as_sfc(bb), add = TRUE, border = 'red') 754s > st_overlaps(xx) %>% 754s + lengths() %>% 754s + sum() 754s [1] 0 754s > 754s > st_as_sfc(bb) %>% 754s + st_difference(st_union(xx)) %>% 754s + st_area() 754s numeric(0) 754s > 754s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons", flat_topped = TRUE) 754s > plot(xx, border = 'green', main = "flat topped") 754s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points", flat_topped = TRUE) 754s > plot(x, add = TRUE) 754s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners", flat_topped = TRUE) 754s > plot(x, col = 'orange', add = TRUE) 755s > plot(st_as_sfc(bb), add = TRUE, border = 'red') 755s > st_overlaps(xx) %>% 755s + lengths() %>% 755s + sum() 755s [1] 0 755s > 755s > st_as_sfc(bb) %>% 755s + st_difference(st_union(xx)) %>% 755s + st_area() 755s numeric(0) 755s > 755s BEGIN TEST sfc.R 755s 755s R version 4.3.2 (2023-10-31) -- "Eye Holes" 755s Copyright (C) 2023 The R Foundation for Statistical Computing 755s Platform: aarch64-unknown-linux-gnu (64-bit) 755s 755s R is free software and comes with ABSOLUTELY NO WARRANTY. 755s You are welcome to redistribute it under certain conditions. 755s Type 'license()' or 'licence()' for distribution details. 755s 755s R is a collaborative project with many contributors. 755s Type 'contributors()' for more information and 755s 'citation()' on how to cite R or R packages in publications. 755s 755s Type 'demo()' for some demos, 'help()' for on-line help, or 755s 'help.start()' for an HTML browser interface to help. 755s Type 'q()' to quit R. 755s 755s > suppressPackageStartupMessages(library(sf)) 758s Warning message: 758s package 'sf' was built under R version 4.3.3 758s > 758s > p = st_point(c(1/3,1/6)) 758s > st_sfc(p, precision = 1000) 758s Geometry set for 1 feature 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667 758s CRS: NA 758s Precision: 1000 758s POINT (0.3333333 0.1666667) 758s > st_as_sfc(st_as_binary(st_sfc(p, precision = 0L))) 758s Geometry set for 1 feature 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667 758s CRS: NA 758s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000))) 758s Geometry set for 1 feature 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0.333 ymin: 0.167 xmax: 0.333 ymax: 0.167 758s CRS: NA 758s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000000))) 758s Geometry set for 1 feature 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0.333333 ymin: 0.166667 xmax: 0.333333 ymax: 0.166667 758s CRS: NA 758s > st_as_sfc(st_as_binary(st_sfc(p, precision = 10L))) 758s Geometry set for 1 feature 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0.3 ymin: 0.2 xmax: 0.3 ymax: 0.2 758s CRS: NA 758s > st_as_sfc(st_as_binary(st_sfc(p, precision = -1))) 758s Geometry set for 1 feature 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667 758s CRS: NA 758s > 758s > d = data.frame(a = 1:2) 758s > d$geom = c("POINT(0 0)", "POINT(1 1)") 758s > 758s > st_as_sf(d, wkt = "geom") 758s Simple feature collection with 2 features and 1 field 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s CRS: NA 758s a geom 758s 1 1 POINT (0 0) 758s 2 2 POINT (1 1) 758s > st_as_sf(d, wkt = 2) 758s Simple feature collection with 2 features and 1 fieldPOINT (0.3333333 0.1666667) 758s POINT (0.333 0.167) 758s POINT (0.333333 0.166667) 758s POINT (0.3 0.2) 758s POINT (0.3333333 0.1666667) 758s 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s CRS: NA 758s a geom 758s 1 1 POINT (0 0) 758s 2 2 POINT (1 1) 758s > st_as_sf(d, wkt = "geom", remove = FALSE) 758s Simple feature collection with 2 features and 2 fields 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s CRS: NA 758s a geom geometry 758s 1 1 POINT(0 0) POINT (0 0) 758s 2 2 POINT(1 1) POINT (1 1) 758s > 758s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)")) 758s Geometry set for 2 features 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s CRS: NA 758s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))")) 758s Geometry set for 3 features 758s Geometry type: GEOMETRY 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s CRS: NA 758s > st_as_sfc(character(0)) 758s Geometry set for 0 features 758s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 758s CRS: NA 758s > x = st_as_sfc(character(0), 4326) 758s POINT (0 0) 758s POINT (1 1) 758s POINT (0 0) 758s POINT (1 1) 758s POLYGON ((0 0, 1 1, 0 1, 0 0)) 758s > y = st_as_sfc(character(0), crs = 4326) 758s > all.equal(x, y) 758s [1] TRUE 758s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))"), 758s + "+proj=longlat +datum=WGS84") 758s Geometry set for 3 features 758s Geometry type: GEOMETRY 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s Geodetic CRS: +proj=longlat +datum=WGS84 758s POINT (0 0) 758s POINT (1 1) 758s POLYGON ((0 0, 1 1, 0 1, 0 0)) 758s > dg = st_as_sf(d, wkt = "geom") 758s > print(dg, n = 1) 758s Simple feature collection with 2 features and 1 field 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 758s CRS: NA 758s First 1 features: 758s a geom 758s 1 1 POINT (0 0) 758s > head(st_as_sf(d, wkt = "geom"), 1) 758s Simple feature collection with 1 feature and 1 field 758s Geometry type: POINT 758s Dimension: XY 758s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 0 758s CRS: NA 758s a geom 758s 1 1 POINT (0 0) 758s > 758s > d$geom = st_as_sfc(d$geom) 758s > d1 = d 758s > attr(d1, "sf_col") = "geom" 758s > st_geometry(d1) = d$geom 758s > 758s > d$geometry = d$geom # second geometry list-column 758s > if (require(testthat, quietly = TRUE)) { 758s + expect_warning(st_geometry(d) <- d$geom) 758s + } 760s > d 760s Simple feature collection with 2 features and 1 field 760s Active geometry column: geom 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 760s CRS: NA 760s a geomPOINT (0 1) 760s POINT (0 1) 760s Warning message: 760s st_crs<- : replacing crs does not reproject data; use st_transform for that 760s geometry 760s 1 1 POINT (0 0) POINT (0 0) 760s 2 2 POINT (1 1) POINT (1 1) 760s > 760s > x = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326) 760s > # don't warn when replacing crs with identical value: 760s > st_sfc(x, crs = 4326) 760s Geometry set for 2 features 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s Geodetic CRS: WGS 84 760s > y = st_sfc(x, crs = "+proj=longlat +datum=WGS84 +no_defs") 760s > # but do when it changes: 760s > y = st_sfc(x, crs = 3857) 760s > 760s > p = st_point(0:1) 760s > st_cast(p, "MULTIPOINT") 760s MULTIPOINT ((0 1)) 760s > mp = st_multipoint(rbind(c(0,1), c(2,2))) 760s > st_cast(mp, "POINT") 760s POINT (0 1) 760s Warning message: 760s In st_cast.MULTIPOINT(mp, "POINT") : point from first coordinate only 760s > st_cast(mp, "MULTIPOINT") 760s MULTIPOINT ((0 1), (2 2)) 760s > 760s > # geometry collection to its elements: 760s > st_cast(st_geometrycollection(list(mp)), "POINT") 760s POINT (0 1) 760s Warning message: 760s In st_cast.MULTIPOINT(x[[1]], to, ...) : point from first coordinate only 760s MULTIPOINT ((0 1), (2 2)) 760s MULTIPOINT ((0 1)) 760s Warning message: 760s In st_cast.GEOMETRYCOLLECTION(st_geometrycollection(list(p, mp)), : 760s only first part of geometrycollection is retained 760s POINT (0 1) 760s POINT (0 1) 760s Warning message: 760s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 760s Warning message: 760s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 760s POINT (0 1) 760s POINT (0 1) 760s Warning message: 760s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 760s POINT (0 1) 760s POINT (0 1) 760s Warning message: 760s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 760s > st_cast(st_geometrycollection(list(mp)), "MULTIPOINT") 760s > st_cast(st_geometrycollection(list(p,mp)), "MULTIPOINT") 760s > 760s > mp = st_multipoint(rbind(c(0,1))) 760s > x = st_sfc(p, mp) 760s > st_cast(x, "POINT") 760s Geometry set for 2 features 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s > 760s > sf = st_sf(a = 3:2, geom = x) 760s > st_cast(sf, "POINT") 760s Simple feature collection with 2 features and 1 field 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s a geom 760s 1 3 POINT (0 1) 760s 2 2 POINT (0 1) 760s > 760s > 760s > x %>% st_cast("POINT") 760s Geometry set for 2 features 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s > 760s > # points: 760s > mp = st_multipoint(rbind(c(0,1))) # single-point multipoint 760s > st_sfc(p,mp) %>% st_cast("POINT") 760s Geometry set for 2 features 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s > st_sfc(p,mp) %>% st_cast("MULTIPOINT") 760s Geometry set for 2 features 760s Geometry type: MULTIPOINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s MULTIPOINT ((0 1)) 760s MULTIPOINT ((0 1)) 760s > 760s > # lines: 760s > pts = rbind(c(0,0), c(1,1), c(2,1)) 760s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("LINESTRING") 760s Geometry set for 2 features 760s Geometry type: LINESTRING 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 1 760s CRS: NA 760s LINESTRING (0 0, 1 1, 2 1) 760s LINESTRING (0 0, 1 1, 2 1) 760s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("MULTILINESTRING") 760s Geometry set for 2 features 760s Geometry type: MULTILINESTRING 760s Dimension: XY 760s MULTILINESTRING ((0 0, 1 1, 2 1)) 760s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 1 760s CRS: NA 760s MULTILINESTRING ((0 0, 1 1, 2 1)) 760s > 760s > # polygons: 760s > pts = rbind(c(0,0), c(1,1), c(0,1), c(0,0)) 760s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("POLYGON") 760s Geometry set for 2 features 760s POLYGON ((0 0, 1 1, 0 1, 0 0)) 760s POLYGON ((0 0, 1 1, 0 1, 0 0)) 760s Geometry type: POLYGON 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 760s CRS: NA 760s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("MULTIPOLYGON") 760s Geometry set for 2 features 760s Geometry type: MULTIPOLYGON 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 760s CRS: NA 760s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0))) 760s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0))) 760s > 760s > 760s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>% st_cast() 760s Geometry set for 2 features 760s Geometry type: GEOMETRY 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s POINT (0 1) 760s MULTIPOINT ((0 1)) 760s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>% 760s + st_cast() %>% 760s + st_cast("POINT") 760s Geometry set for 2 features 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s POINT (0 1) 760s POINT (0 1) 760s Warning message: 760s > In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only 760s 760s > p = rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0)) 760s > pol = st_polygon(list(p)) 760s > # plot(pol) 760s > try(plot(st_polygonize(pol))) # --> breaks 760s > Error in st_polygonize.sfc(st_sfc(x)) : 760s inherits(x, "sfc_LINESTRING") || inherits(x, "sfc_MULTILINESTRING") is not TRUE 760s st_length(st_sfc(st_point(c(0,0)))) 760s [1] 0 760s > 760s > try(as(st_sfc(st_linestring(matrix(1:9,3))), "Spatial")) 760s Error in StopZ(zm) : 760s sp supports Z dimension only for POINT and MULTIPOINT. 760s use `st_zm(...)` to coerce to XY dimensions 760s > 760s > # check conus is present: 760s > x = st_sfc(st_point(c(-90,35)), st_point(c(-80,36)), 760s + crs = "+proj=longlat +datum=NAD27") 760s > y = st_transform(x, 3857) 760s > 760s > sf_extSoftVersion()[1:3] 760s GEOS GDAL proj.4 760s "3.12.1" "3.8.4" "9.4.0" 760s > 760s > # Ops.sfc: 760s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1)))) 760s > ls * 2 760s Geometry set for 1 feature 760s Geometry type: LINESTRING 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 2 760s CRS: NA 760s LINESTRING (0 0, 0 2) 760s > ls - 2 760s Geometry set for 1 feature 760s Geometry type: LINESTRING 760s Dimension: XY 760s Bounding box: xmin: -2 ymin: -2 xmax: -2 ymax: -1 760s CRS: NA 760s LINESTRING (-2 -2, -2 -1) 760s > (ls + 2) %% 3 760s Geometry set for 1 feature 760s Geometry type: LINESTRING 760s Dimension: XY 760s Bounding box: xmin: 2 ymin: 0 xmax: 2 ymax: 2 760s CRS: NA 760s LINESTRING (2 2, 2 0) 760s > ls / ls 760s Geometry set for 1 feature (with 1 geometry empty) 760s Geometry type: GEOMETRYCOLLECTION 760s Dimension: XY 760s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 760s CRS: NA 760s GEOMETRYCOLLECTION EMPTY 760s > p_ = st_point(0:1) 760s > ll = st_sfc(ls[[1]], p_) 760s > ll & st_sfc(p_) 760s Geometry set for 2 features 760s Geometry type: POINT 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 760s CRS: NA 760s POINT (0 1) 760s POINT (0 1) 760s > ll | st_sfc(p_) 760s Geometry set for 2 features 760s Geometry type: GEOMETRY 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 1 760s CRS: NA 760s LINESTRING (0 0, 0 1) 760s POINT (0 1) 760s > ll %/% st_sfc(p_) 760s Geometry set for 2 features (with 1 geometry empty) 760s Geometry type: GEOMETRY 760s Dimension: XY 760s Bounding box: xmin: 0 ymin: 0 xmax: 0 ymax: 1 760s CRS: NA 760s LINESTRING (0 0, 0 1) 760s GEOMETRYCOLLECTION EMPTY 760s > ll == st_sfc(p_) 761s [1] FALSE TRUE 761s > ll != st_sfc(p_) 761s [1] TRUE FALSE 761s > 761s > 761s > str(x) 761s sfc_POINT of length 2; first list element: 'XY' num [1:2] -90 35 761s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) 761s > str(nc) 761s Classes 'sf' and 'data.frame': 100 obs. of 15 variables: 761s $ AREA : num 0.114 0.061 0.143 0.07 0.153 0.097 0.062 0.091 0.118 0.124 ... 761s $ PERIMETER: num 1.44 1.23 1.63 2.97 2.21 ... 761s $ CNTY_ : num 1825 1827 1828 1831 1832 ... 761s $ CNTY_ID : num 1825 1827 1828 1831 1832 ... 761s $ NAME : chr "Ashe" "Alleghany" "Surry" "Currituck" ... 761s $ FIPS : chr "37009" "37005" "37171" "37053" ... 761s $ FIPSNO : num 37009 37005 37171 37053 37131 ... 761s $ CRESS_ID : int 5 3 86 27 66 46 15 37 93 85 ... 761s $ BIR74 : num 1091 487 3188 508 1421 ... 761s $ SID74 : num 1 0 5 1 9 7 0 0 4 1 ... 761s $ NWBIR74 : num 10 10 208 123 1066 ... 761s $ BIR79 : num 1364 542 3616 830 1606 ... 761s $ SID79 : num 0 3 6 2 3 5 2 2 2 5 ... 761s $ NWBIR79 : num 19 12 260 145 1197 ... 761s $ geometry :sfc_MULTIPOLYGON of length 100; first list element: List of 1 761s ..$ :List of 1 761s .. ..$ : num [1:27, 1:2] -81.5 -81.5 -81.6 -81.6 -81.7 ... 761s ..- attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg" 761s - attr(*, "sf_column")= chr "geometry" 761s - attr(*, "agr")= Factor w/ 3 levels "constant","aggregate",..: NA NA NA NA NA NA NA NA NA NA ... 761s ..- attr(*, "names")= chr [1:14] "AREA" "PERIMETER" "CNTY_" "CNTY_ID" ... 761s > bb = st_as_sfc(st_bbox(nc)) 761s > format(st_bbox(nc)) 761s [1] "((-84.32385,33.88199),(-75.45698,36.58965))" 761s > 761s > st_agr("constant") 761s [1] constant 761s Levels: constant aggregate identity 761s > st_agr() 761s [1] 761s Levels: constant aggregate identity 761s > x <- st_sf(a = 1:2, b = 3:4, geom = x, agr = c("constant", "aggregate")) 761s > y <- x %>% st_set_agr("constant") 761s > y 761s Simple feature collection with 2 features and 2 fields 761s Attribute-geometry relationships: constant (2) 761s Geometry type: POINT 761s Dimension: XY 761s Bounding box: xmin: -90 ymin: 35 xmax: -80 ymax: 36 761s Geodetic CRS: +proj=longlat +datum=NAD27 761s a b geom 761s 1 1 3 POINT (-90 35) 761s 2 2 4 POINT (-80 36) 761s > 761s > sf1 <- st_sf(a = c("x", "y"), geom = st_sfc(st_point(3:4), st_point(3:4))) 761s > sf1[names(sf1)] 761s Simple feature collection with 2 features and 1 field 761s Geometry type: POINT 761s Dimension: XY 761s Bounding box: xmin: 3 ymin: 4 xmax: 3 ymax: 4 761s CRS: NA 761s a geom 761s 1 x POINT (3 4) 761s 2 y POINT (3 4) 761s > 761s > st_bbox(sf1) 761s xmin ymin xmax ymax 761s 3 4 3 4 761s > bb = st_bbox(nc) 761s > bb 761s xmin ymin xmax ymax 761s -84.32385 33.88199 -75.45698 36.58965 761s > st_crs(bb) 761s Coordinate Reference System: 761s User input: NAD27 761s wkt: 761s GEOGCRS["NAD27", 761s DATUM["North American Datum 1927", 761s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 761s LENGTHUNIT["metre",1]]], 761s PRIMEM["Greenwich",0, 761s ANGLEUNIT["degree",0.0174532925199433]], 761s CS[ellipsoidal,2], 761s AXIS["latitude",north, 761s ORDER[1], 761s ANGLEUNIT["degree",0.0174532925199433]], 761s AXIS["longitude",east, 761s ORDER[2], 761s ANGLEUNIT["degree",0.0174532925199433]], 761s ID["EPSG",4267]] 761s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = st_crs(4326)) 761s xmin ymin xmax ymax 761s 16.1 48.6 16.6 47.9 761s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = 4326) 761s xmin ymin xmax ymax 761s 16.1 48.6 16.6 47.9 761s > 761s > bb$xrange 761s xmin xmax 761s -84.32385 -75.45698 761s > bb$yrange 761s ymin ymax 761s 33.88199 36.58965 761s > bb$xmin 761s xmin 761s -84.32385 761s > bb$ymin 761s ymin 761s 33.88199 761s > bb$xmax 761s xmax 761s -75.45698 761s > bb$ymax 761s ymax 761s 36.58965 761s > try(bb$foo) 761s > 761s Error in `$.bbox`(bb, foo) : unsupported name 761s > # merge: 761s > a = data.frame(a = 1:3, b = 5:7) 761s > st_geometry(a) = st_sfc(st_point(c(0,0)), st_point(c(1,1)), st_point(c(2,2))) 761s > b = data.frame(x = c("a", "b", "c"), b = c(2,5,6)) 761s > merge(a, b) 761s Simple feature collection with 2 features and 3 fields 761s Geometry type: POINT 761s Dimension: XY 761s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 761s CRS: NA 761s b a x geometry 761s 1 5 1 b POINT (0 0) 761s 2 6 2 c POINT (1 1) 761s > merge(a, b, all = TRUE) 761s Simple feature collection with 4 features and 3 fields (with 1 geometry empty) 761s Geometry type: GEOMETRY 761s Dimension: XY 761s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 2 761s CRS: NA 761s b a x geometry 761s 1 2 NA a GEOMETRYCOLLECTION EMPTY 761s 2 5 1 b POINT (0 0) 761s 3 6 2 c POINT (1 1) 761s 4 7 3 POINT (2 2) 761s > 761s > if (require(dplyr, quietly = TRUE)) { 761s + # joins: 761s + inner_join(a, b) 761s + left_join(a, b) 761s + right_join(a, b) 761s + full_join(a, b) 761s + semi_join(a, b) 761s + anti_join(a, b) 761s + left_join(a, data.frame(b, geometry = 1), by = "b") 761s + } 761s 761s Attaching package: 'dplyr' 761s 761s The following object is masked from 'package:testthat': 761s 761s matches 761s 761s The following objects are masked from 'package:stats': 761s 761s filter, lag 761s 761s The following objects are masked from 'package:base': 761s 761s intersect, setdiff, setequal, union 761s 761s Joining with `by = join_by(b)` 761s Joining with `by = join_by(b)` 761s Joining with `by = join_by(b)` 761s Joining with `by = join_by(b)` 761s Joining with `by = join_by(b)` 762s Joining with `by = join_by(b)` 762s Simple feature collection with 3 features and 4 fields 762s Geometry type: POINT 762s Dimension: XY 762s Bounding box: xmin: 0 ymin: 0 xmax: 2 ymax: 2 762s CRS: NA 762s a b x geometry.y geometry.x 762s 1 1 5 b 1 POINT (0 0) 762s 2 2 6 c 1 POINT (1 1) 762s 3 3 7 NA POINT (2 2) 762s > 762s > # st_joins: 762s > a = st_sf(a = 1:3, 762s + geom = st_sfc(st_point(c(1,1)), st_point(c(2,2)), st_point(c(3,3)))) 762s > b = st_sf(a = 11:14, 762s + geom = st_sfc(st_point(c(10,10)), st_point(c(2,2)), st_point(c(2,2)), st_point(c(3,3)))) 762s > st_join(a, b) 762s Simple feature collection with 4 features and 2 fields 762s Geometry type: POINT 762s Dimension: XY 762s Bounding box: xmin: 1 ymin: 1 xmax: 3 ymax: 3 762s CRS: NA 762s a.x a.y geom 762s 1 1 NA POINT (1 1) 762s 2 2 12 POINT (2 2) 762s 2.1 2 13 POINT (2 2) 762s 3 3 14 POINT (3 3) 762s > st_join(a, b, left = FALSE) 762s Simple feature collection with 3 features and 2 fields 762s Geometry type: POINT 762s Dimension: XY 762s Bounding box: xmin: 2 ymin: 2 xmax: 3 ymax: 3 762s CRS: NA 762s a.x a.y geom 762s 2 2 12 POINT (2 2) 762s 2.1 2 13 POINT (2 2) 762s 3 3 14 POINT (3 3) 762s > # st_join, largest = TRUE: 762s > nc <- st_transform(st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE), 2264) 762s > gr = st_sf( 762s + label = apply(expand.grid(1:10, LETTERS[10:1])[,2:1], 1, paste0, collapse = " "), 762s + geom = st_make_grid(st_as_sfc(st_bbox(nc)))) 762s > gr$col = sf.colors(10, categorical = TRUE, alpha = .3) 762s > # cut, to check, NA's work out: 762s > gr = gr[-(1:30),] 762s > st_join(nc, gr, largest = TRUE) 763s Simple feature collection with 100 features and 16 fields 763s Geometry type: MULTIPOLYGON 763s Dimension: XY 763s Bounding box: xmin: 406265 ymin: 48359.7 xmax: 3052877 ymax: 1044143 763s Projected CRS: NAD83 / North Carolina (ftUS) 763s First 10 features: 763s AREA PERIMETER CNTY_ CNTY_IDWarning message: 763s NAME FIPS FIPSNO CRESS_ID BIR74 SID74 763s 1 0.114 1.442 1825 1825 Ashe 37009 37009 5 1091 1 763s 2 0.061 1.231 1827 1827 Alleghany 37005 37005 3 487 0 763s 3 0.143 1.630 1828 1828 Surry 37171 37171 86 3188 5 763s 4 0.070 2.968 1831 1831 Currituck 37053 37053 27 508 1 763s 5 0.153 2.206 1832 1832 Northampton 37131 37131 66 1421 9 763s 6 0.097 1.670 1833 1833 Hertford 37091 37091 46 1452 7 763s 7 0.062 1.547 1834 1834 Camden 37029 37029 15 286 0 763s 8 0.091 1.284 1835 1835 Gates 37073 37073 37 420 0 763s 9 0.118 1.421 1836 1836 Warren 37185 37185 93 968 4 763s 10 0.124 1.428 1837 1837 Stokes 37169 37169 85 1612 1 763s NWBIR74 BIR79 SID79 NWBIR79 label col geometry 763s 1 10 1364 0 19 A 4 #fb80724d MULTIPOLYGON (((1270813 913... 763s 2 10 542 3 12 A 4 #fb80724d MULTIPOLYGON (((1340553 959... 763s 3 208 3616 6 260 A 5 #80b1d34d MULTIPOLYGON (((1570586 910... 763s 4 123 830 2 145 A 10 #bc80bd4d MULTIPOLYGON (((2881206 948... 763s 5 1066 1606 3 1197 A 8 #fccde54d MULTIPOLYGON (((2525700 911... 763s 6 954 1838 5 1237 A 9 #d9d9d94d MULTIPOLYGON (((2665112 911... 763s 7 115 350 2 139 A 10 #bc80bd4d MULTIPOLYGON (((2881206 948... 763s 8 254 594 2 371 A 9 #d9d9d94d MULTIPOLYGON (((2717988 951... 763s 9 748 1190 2 844 A 8 #fccde54d MULTIPOLYGON (((2203888 914... 763s 10 160 2038 5 176 A 5 #80b1d34d MULTIPOLYGON (((1697618 911... 763s attribute variables are assumed to be spatially constant throughout all geometries 763s > 763s > # rbind: 763s > x = st_sf(a = 1:2, geom = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326)) 763s > rbind(x, x, x) 763s Simple feature collection with 6 features and 1 field 763s Geometry type: POINT 763s Dimension: XY 763s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 763s Geodetic CRS: WGS 84 763s a geom 763s 1 1 POINT (0 1) 763s 2 2 POINT (0 1) 763s 3 1 POINT (0 1) 763s 4 2 POINT (0 1) 763s 5 1 POINT (0 1) 763s 6 2 POINT (0 1) 763s > nc2 = rbind(nc[1:50, ], nc[51:100, ]) 763s > all.equal(nc, nc2) 763s [1] TRUE 763s > 763s > # st_sample: 763s > suppressWarnings(RNGversion("3.5.3")) 763s > set.seed(131) 763s > options(digits=6) 763s > x = st_sfc(st_polygon(list(rbind(c(0,1),c(90,1),c(90,90),c(0,90),c(0,1)))), crs = st_crs(4326)) 763s > (p <- st_sample(x, 10)) 764s Geometry set for 10 features 764s Geometry type: POINT 764s Dimension: XY 764s Bounding box: xmin: 11.2448 ymin: 3.16385 xmax: 82.3451 ymax: 60.1703 764s Geodetic CRS: WGS 84 764s First 5 geometries: 764s POINT (18.5793 25.2416) 764s POINT (11.2448 20.8596) 764s POINT (26.3946 60.1703) 764s POINT (33.8202 19.146) 764s POINT (76.1712 32.1029) 764s > p <- st_sample(x[[1]], 10) # sfg method 764s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat: 764s > p <- st_sample(x, 10) 764s > x = st_sfc(st_polygon(list(rbind(c(-180,-90),c(180,-90),c(180,90),c(-180,90),c(-180,-90)))), 764s + crs=st_crs(4326)) 764s > #FIXME: 764s > # if (sf_extSoftVersion()["proj.4"] >= "4.9.0") # lwgeom breaks on this 764s > # (p <- st_sample(x, 10)) 764s > pt = st_multipoint(matrix(1:20,,2)) 764s > st_sample(p, 3) 764s Geometry set for 1 feature 764s Geometry type: MULTIPOINT 764s Dimension: XY 764s Bounding box: xmin: 41.0557 ymin: 27.8024 xmax: 80.9558 ymax: 65.5424 764s CRS: NA 764s > try(st_sample(p, 3.3)) 764s Geometry set for 1 feature 764s Geometry type: MULTIPOINT 764s Dimension: XY 764s Bounding box: xmin: 19.3415 ymin: 9.17624 xmax: 80.9558 ymax: 65.5424 764s CRS: NA 764s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))), 764s + st_linestring(rbind(c(0,0),c(.1,0))), 764s + st_linestring(rbind(c(0,1),c(.1,1))), 764s + st_linestring(rbind(c(2,2),c(2,2.00001)))) 764s > st_sample(ls, 80) 764s MULTIPOINT ((57.2118 52.329), (80.9558 65.5424)... 764s MULTIPOINT ((19.3415 18.6622), (57.1389 9.17624... 764s Warning message: 764s In st_sample.sfc(p, 3.3) : size is not an integer 764s Geometry set for 4 features (with 1 geometry empty) 764s Geometry type: MULTIPOINT 764s Dimension: XY 764s Bounding box: xmin: 0 ymin: 0 xmax: 0.0914728 ymax: 1 764s CRS: NA 764s MULTIPOINT ((0 0.137868), (0 0.777635), (0 0.40... 764s MULTIPOINT ((0.0914728 0), (0.073852 0), (0.003... 764s MULTIPOINT ((0.0488222 1), (0.0716508 1), (0.08... 764s MULTIPOINT EMPTY 764s > st_sample(nc[1:2,], size = c(10,20)) 764s Geometry set for 30 features 764s Geometry type: POINT 764s Dimension: XY 764s Bounding box: xmin: 1216510 ymin: 935852 xmax: 1428880 ymax: 1031490 764s Projected CRS: NAD83 / North Carolina (ftUS) 764s First 5 geometries: 764s POINT (1264558 935852) 764s POINT (1256623 949369) 764s POINT (1222665 972624) 764s POINT (1333528 968263) 764s POINT (1310837 958630) 764s > # try with LINES, LongLat, should generate a warning: 764s > nc[1:2,] %>% st_transform(4326) %>% st_cast("MULTILINESTRING") %>% st_sample(size = c(10,20)) 764s although coordinates are longitude/latitude, st_sample assumes that they are 764s planar 764s although coordinates are longitude/latitude, st_sample assumes that they are 764s planar 764s Geometry set for 2 features 764s Geometry type: MULTIPOINT 764s Dimension: XY 764s Bounding box: xmin: -81.6893 ymin: 36.2491 xmax: -80.914 ymax: 36.5726 764s Geodetic CRS: WGS 84 764s MULTIPOINT ((-81.2401 36.3717), (-81.6893 36.36... 764s MULTIPOINT ((-81.2629 36.4076), (-81.1375 36.56... 764s > st_sample(ls, 80, type = "regular") 764s Geometry set for 4 features (with 1 geometry empty) 764s Geometry type: MULTIPOINT 764s Dimension: XY 764s Bounding box: xmin: 0 ymin: 0 xmax: 0.095454 ymax: 1 764s CRS: NA 764s MULTIPOINT ((0 0.0104441), (0 0.0254442), (0 0.... 764s MULTIPOINT ((0.000452334 0), (0.0154525 0), (0.... 764s MULTIPOINT ((0.00545321 1), (0.0204533 1), (0.0... 764s MULTIPOINT EMPTY 764s > p_sample = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = FALSE)) 765s > lengths(p_sample) 765s [1] 104 106 110 96 98 120 87 105 104 99 765s > p_sample_exact = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = TRUE)) 767s > lengths(p_sample_exact) 767s [1] 100 100 100 100 100 100 100 100 100 100 767s > #plot(nc$geometry[1]) 767s > #plot(p_sample[[1]], add = TRUE) 767s > #plot(p_sample_exact[[1]], add = TRUE) 767s > 767s > if (require(dplyr, quietly = TRUE)) { 767s + #class(st_bind_cols(nc, as.data.frame(nc)[1:3])) 767s + print(class(dplyr::bind_cols(nc, as.data.frame(nc)[1:3]))) 767s + } 767s New names: 767s * `AREA` -> `AREA...1` 767s * `PERIMETER` -> `PERIMETER...2` 767s * `CNTY_` -> `CNTY_...3` 767s * `AREA` -> `AREA...16` 767s * `PERIMETER` -> `PERIMETER...17` 767s * `CNTY_` -> `CNTY_...18` 767s [1] "sf" "data.frame" 767s > class(rbind(nc, nc)) 767s [1] "sf" "data.frame" 767s > class(cbind(nc, nc)) 767s [1] "sf" "data.frame" 767s > 767s > x = st_sfc(st_point(0:1), st_point(2:3)) 767s > x[c(NA,1,NA,2,NA)] 767s Geometry set for 5 features (with 3 geometries empty) 767s Geometry type: POINT 767s Dimension: XY 767s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 767s CRS: NA 767s > 767s > # jitter 767s > pts = st_centroid(st_geometry(nc)) 767s > plot(pts) 767s POINT EMPTY 767s POINT (0 1) 767s POINT EMPTY 767s POINT (2 3) 767s POINT EMPTY 768s > plot(st_jitter(pts, .05), add = TRUE, col = 'red') 768s > plot(st_geometry(nc)) 768s > plot(st_jitter(st_geometry(nc), factor = .01), add = TRUE, col = '#ff8888') 768s > st_jitter(st_sfc(st_point(0:1)), amount = .1) 768s Geometry set for 1 feature 768s Geometry type: POINT 768s Dimension: XY 768s Bounding box: xmin: -0.0500922 ymin: 0.992953 xmax: -0.0500922 ymax: 0.992953 768s CRS: NA 768s POINT (-0.0500922 0.992953) 768s > 768s > # st_bbox: 768s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(raster, quietly = TRUE)) { 768s + demo(meuse, ask = FALSE, echo = FALSE) 768s + suppressWarnings(st_bbox(meuse)) 768s + crs = suppressWarnings(st_crs(meuse)) 768s + suppressWarnings(st_bbox(raster(meuse.grid))) 768s + st_bbox(extent(raster())) 768s + } 773s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatGraph" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatGraph" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 774s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 775s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 776s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 776s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 776s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 776s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 776s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 776s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 777s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 777s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 777s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 777s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 778s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 778s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 778s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 778s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 778s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 783s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 783s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 783s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 783s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 784s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 784s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 784s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 784s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?) 784s 784s Attaching package: 'raster' 784s 784s The following object is masked from 'package:dplyr': 784s 784s select 784s 785s xmin ymin xmax ymax 785s -180 -90 180 90 785s > 785s > # st_to_s2 785s > if (FALSE) { # stops working with GDAL 2.3.0 / PROJ 5.0.1: 785s + x = sf:::st_to_s2(nc) 785s + x1 = st_geometry(x) 785s + cc = st_coordinates(x1) 785s + summary(sqrt(cc[,1]^2+cc[,2]^2+cc[,3]^2)) 785s + } 785s > 785s > # check_ring_dir 785s > m = rbind(c(0,0), c(0,1), c(1,1), c(1,0), c(0,0)) 785s > mi = m[nrow(m):1,] 785s > pol = st_polygon(list(m * 10, m + .5, mi + 1.5, mi + 3.5, m + 5, mi + 6.5)) 785s > st_sfc(pol) 785s Geometry set for 1 feature 785s Geometry type: POLYGON 785s Dimension: XY 785s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 785s CRS: NA 785s > x = st_sfc(pol, check_ring_dir=TRUE) 785s > y = st_sf(a = 1, geom = st_sfc(pol), check_ring_dir=TRUE) 785s > str(x) 785s sfc_POLYGON of length 1; first list element: List of 6 785s $ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0 785s $ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5 785s $ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5 785s $ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5 785s $ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5 785s $ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5 785s - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 785s > x = st_sfc(st_polygon(), st_polygon(), check_ring_dir=TRUE) 785s POLYGON ((0 0, 0 10, 10 10, 10 0, 0 0), (0.5 0.... 785s > str(x) 785s sfc_POLYGON of length 2; first list element: list() 785s - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 785s > # empty ring/zero area: 785s > x = st_sfc(st_polygon(list(m[c(1,3,1),])), check_ring_dir=TRUE) 785s > 785s > mp = st_multipolygon(list(pol, pol)) 785s > try(x <- st_sfc(mp, st_polygon(), check_ring_dir=TRUE)) 785s Error in check_ring_dir(lst) : 785s check_ring_dir: not supported for class sfc_GEOMETRY 785s > x <- st_sfc(mp, pol) %>% st_cast("MULTIPOLYGON") %>% st_sfc(check_ring_dir=TRUE) 785s > MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (... 785s x 785s Geometry set for 2 features 785s Geometry type: MULTIPOLYGON 785s Dimension: XY 785s Bounding box: xmin: 0 ymin: 0 xmax: 10 ymax: 10 785s CRS: NA 785s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (... 785s > str(x) 785s sfc_MULTIPOLYGON of length 2; first list element: List of 2 785s $ :List of 6 785s ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0 785s ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5 785s ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5 785s ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5 785s ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5 785s ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5 785s ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 785s $ :List of 6 785s ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0 785s ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5 785s ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5 785s ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5 785s ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5 785s ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5 785s ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg" 785s - attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg" 785s > 785s > x = st_sfc(st_linestring(rbind(c(-179,0),c(179,0))), crs = 4326) 785s > st_wrap_dateline(st_sf(a = 1, geometry = x)) 785s Simple feature collection with 1 feature and 1 field 785s Geometry type: MULTILINESTRING 785s Dimension: XY 785s Bounding box: xmin: -180 ymin: 0 xmax: 180 ymax: 0 785s Geodetic CRS: WGS 84 785s a geometry 785s 1 1 MULTILINESTRING ((-179 0, -... 785s > st_wrap_dateline(x) 785s Geometry set for 1 feature 785s Geometry type: MULTILINESTRING 785s Dimension: XY 785s Bounding box: xmin: -180 ymin: 0 xmax: 180 ymax: 0 785s Geodetic CRS: WGS 84 785s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0)) 785s > st_wrap_dateline(x[[1]]) 785s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0)) 785s > 785s > geo <- c("{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68152563269095,36.43764870908927]}", 785s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67408758213843,36.43366018922779]}", 785s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67708346361097,36.44208638659282]}", 785s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67886661944996,36.44110273135671]}", 785s + "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68089232041565,36.44173155205561]}") 785s > st_as_sfc(geo, GeoJSON = TRUE) 785s Geometry set for 5 features 785s Geometry type: POINT 785s Dimension: XY 785s Bounding box: xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421 785s Geodetic CRS: WGS 84 785s POINT (-118.682 36.4376) 785s POINT (-118.674 36.4337) 785s POINT (-118.677 36.4421) 785s POINT (-118.679 36.4411) 785s POINT (-118.681 36.4417) 785s > st_as_sfc(geo, GeoJSON = TRUE, crs = 4326) 785s Geometry set for 5 features 785s Geometry type: POINT 785s Dimension: XY 785s Bounding box: xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421 785s Geodetic CRS: WGS 84 785s POINT (-118.682 36.4376) 785s POINT (-118.674 36.4337) 785s POINT (-118.677 36.4421) 785s POINT (-118.679 36.4411) 785s POINT (-118.681 36.4417) 785s > 785s > st_as_sfc(st_as_binary(st_sfc(st_point(0:1)))[[1]], crs = 4326) 785s Geometry set for 1 feature 785s Geometry type: POINT 785s Dimension: XY 785s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 785s Geodetic CRS: WGS 84 785s POINT (0 1) 785s > 786s POINT (0 1) 786s POLYGON ((0.983044 0.0650651, 0.959619 0.040380... 786s POLYGON ((0.983044 0.0650651, 0.959619 0.040380... 786s > x = nc 786s > x$geom = NULL 786s > class(x) 786s [1] "sf" "data.frame" 786s > 786s > st_as_sfc(list(st_point(0:1)), crs = 4326) 786s Geometry set for 1 feature 786s Geometry type: POINT 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 786s Geodetic CRS: WGS 84 786s > 786s > # crop: 786s > box = c(xmin = 0, ymin = 0, xmax = 1, ymax = 1) 786s > 786s > pol = st_sfc(st_buffer(st_point(c(.5, .5)), .65)) 786s > pol_sf = st_sf(a=1, geom=pol) 786s > 786s > st_crop(pol, box) 786s Geometry set for 1 feature 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 786s CRS: NA 786s > st_crop(pol, st_bbox(box)) 786s Geometry set for 1 feature 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 786s CRS: NA 786s > st_crop(pol_sf, box) 786s Simple feature collection with 1 feature and 1 field 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 786s CRS: NA 786s a geom 786s 1 1 POLYGON ((0.983044 0.065065... 786s Warning message: 786s attribute variables are assumed to be spatially constant throughout all geometries 786s > st_crop(pol_sf, st_bbox(box)) 786s Simple feature collection with 1 feature and 1 field 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 1 ymax: 1 786s CRS: NA 786s aWarning message: 786s geom 786s 1 1 POLYGON ((0.983044 0.065065... 786s attribute variables are assumed to be spatially constant throughout all geometries 786s > 786s > # new sample methods: 786s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat: 786s > p <- st_sample(x, 10, type = "regular") 786s > p <- st_sample(x, 10, type = "hexagonal") 786s > 786s > all.equal(st_drop_geometry(pol_sf), st_set_geometry(pol_sf, NULL)) 786s [1] TRUE 786s > 786s > # https://github.com/r-spatial/sf/issues/1024 786s > shape1 <-st_sfc(st_polygon(list(rbind(c(0,0), c(1,0), c(3,2), c(2,4), c(1,4), c(0,0))))) 786s > shape2 <- st_sfc(st_polygon()) 786s > shape3 <- st_sfc(st_polygon()) 786s > 786s > shape4 = st_intersection(shape2, shape3) # has zero features 786s > 786s > st_difference(shape1, shape4) 786s Geometry set for 1 feature 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 786s CRS: NA 786s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 786s > st_difference(shape4, shape1) 786s Geometry set for 0 features 786s Bounding box: xmin: NA ymin: NA xmax: NA ymax: NA 786s CRS: NA 786s > st_sym_difference(shape1, shape4) 786s Geometry set for 1 feature 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 786s CRS: NA 786s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 786s > st_union(shape1, shape4) 786s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 786s Geometry set for 1 feature 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 786s CRS: NA 786s > st_union(shape4, shape1) 786s Geometry set for 1 feature 786s Geometry type: POLYGON 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 0 xmax: 3 ymax: 4 786s CRS: NA 786s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0)) 786s > 786s > # transform empty: 786s > tr = st_sf(geom=st_sfc()) %>% st_set_crs(3587) %>% st_transform(4326) 786s > 786s > # NA values are converted to empty; #1114: 786s > x <- data.frame(name=LETTERS) 786s > y <- data.frame(name=LETTERS[1:13], letters[14:26]) 786s > y$geometry <- st_sfc(st_point(c(0,0))) 786s > y <- st_sf(y) 786s > out = merge(x, y, all.x=TRUE) 786s > class(out) 786s [1] "data.frame" 786s > 786s > st_as_sf(st_sfc(st_point(0:1))) 786s Simple feature collection with 1 feature and 0 fields 786s Geometry type: POINT 786s Dimension: XY 786s Bounding box: xmin: 0 ymin: 1 xmax: 0 ymax: 1 786s CRS: NA 786s x 786s 1 POINT (0 1) 786s > 786s BEGIN TEST sfg.R 786s 786s R version 4.3.2 (2023-10-31) -- "Eye Holes" 786s Copyright (C) 2023 The R Foundation for Statistical Computing 786s Platform: aarch64-unknown-linux-gnu (64-bit) 786s 786s R is free software and comes with ABSOLUTELY NO WARRANTY. 786s You are welcome to redistribute it under certain conditions. 786s Type 'license()' or 'licence()' for distribution details. 786s 786s R is a collaborative project with many contributors. 786s Type 'contributors()' for more information and 786s 'citation()' on how to cite R or R packages in publications. 786s 786s Type 'demo()' for some demos, 'help()' for on-line help, or 786s 'help.start()' for an HTML browser interface to help. 786s Type 'q()' to quit R. 786s 787s > suppressPackageStartupMessages(library(sf)) 789s Warning message: 789s > package 'sf' was built under R version 4.3.3 789s c(st_point(1:2), st_point(5:6)) 789s MULTIPOINT ((1 2), (5 6)) 789s > c(st_point(1:2), st_multipoint(matrix(5:8,2))) 789s MULTIPOINT ((1 2), (5 7), (6 8)) 789s > c(st_multipoint(matrix(1:4,2)), st_multipoint(matrix(5:8,2))) 789s MULTIPOINT ((1 3), (2 4), (5 7), (6 8)) 789s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16)) 789s MULTILINESTRING ((11 14, 12 15, 13 16), (1 4, 2 5, 3 6)) 789s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16)) 789s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0))) 789s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0))) 789s > c(st_linestring(matrix(1:6,3)), st_linestring(matrix(11:16,3))) 789s > c(st_linestring(matrix(1:6,3)), st_multilinestring(list(matrix(11:16,3)))) 789s > c(st_multilinestring(list(matrix(1:6,3))), st_multilinestring(list(matrix(11:16,3)))) 789s > pl = list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))) 789s > c(st_polygon(pl), st_polygon(pl)) 789s > c(st_polygon(pl), st_multipolygon(list(pl))) 789s > GEOMETRYCOLLECTION (LINESTRING (1 4, 2 5, 3 6), POINT (1 2)) 789s GEOMETRYCOLLECTION (POINT (1 2), LINESTRING (1 4, 2 5, 3 6), MULTILINESTRING ((11 14, 12 15, 13 16))) 789s GEOMETRYCOLLECTION (MULTILINESTRING ((11 14, 12 15, 13 16)), POINT (5 6), POINT (1 2), LINESTRING (1 4, 2 5, 3 6), POINT (10 11)) 789s POINT (0 1) 789s c(st_linestring(matrix(1:6,3)), st_point(1:2)) 789s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))), 789s + st_geometrycollection(list(st_multilinestring(list(matrix(11:16,3)))))) 789s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))), 789s + st_multilinestring(list(matrix(11:16,3))), st_point(5:6), 789s + st_geometrycollection(list(st_point(10:11)))) 789s > head(st_point(0:1), 2) 789s > 789s > # Ops.sfg: 789s > ls = st_linestring(rbind(c(0,0),c(0,1))) 789s > pt = st_point(1:0) 789s > ls | pt 789s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0)) 789s > ls / pt 789s LINESTRING (0 0, 0 1) 789s > ls & pt 789s GEOMETRYCOLLECTION EMPTY 789s > ls %/% pt 789s > GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0)) 789s # arith: 789s > ls + pt 789s LINESTRING (1 0, 1 1) 789s > ls - pt 789s LINESTRING (-1 0, -1 1) 789s LINESTRING (0 0, 0 0) 789s LINESTRING (0 0, 0 1) 789s POINT (1 0) 789s > ls * pt 789s > ls / pt 789s > # unary: 789s > +pt 789s > -pt 789s > POINT (-1 0) 789s try(!pt) 789s Error in Ops.sfg(pt) : unary ! not defined for "sfg" objects 789s > 789s BEGIN TEST spatstat.R 790s 790s R version 4.3.2 (2023-10-31) -- "Eye Holes" 790s Copyright (C) 2023 The R Foundation for Statistical Computing 790s Platform: aarch64-unknown-linux-gnu (64-bit) 790s 790s R is free software and comes with ABSOLUTELY NO WARRANTY. 790s You are welcome to redistribute it under certain conditions. 790s Type 'license()' or 'licence()' for distribution details. 790s 790s R is a collaborative project with many contributors. 790s Type 'contributors()' for more information and 790s 'citation()' on how to cite R or R packages in publications. 790s 790s Type 'demo()' for some demos, 'help()' for on-line help, or 790s 'help.start()' for an HTML browser interface to help. 790s Type 'q()' to quit R. 790s 790s > suppressPackageStartupMessages(library(sf)) 793s Warning message: 793s package 'sf' was built under R version 4.3.3 793s > if (require(spatstat.random, quietly = TRUE)) { 793s + 793s + data(chicago) 793s + st_as_sf(chicago) 793s + # ppp: 793s + g = gorillas 793s + st_as_sf(g) 793s + marks(g) = NULL 793s + st_as_sf(g) 793s + 793s + # multipolygon: https://github.com/r-spatial/sf/issues/1161 793s + window = read_sf(system.file("shape/nc.shp", package = "sf")) %>% 793s + st_transform(32119) 793s + 793s + win = spatstat.geom::as.owin(window) 793s + 793s + set.seed(1331) 793s + pp2a = runifpoint(n = 50, win = win) 793s + print(st_as_sf(pp2a)) 793s + 793s + # st_sample going the spatstat way 793s + x <- sf::st_sfc(sf::st_polygon(list(rbind(c(0, 0), c(10, 0), c(10, 10), c(0, 0))))) 793s + try(pts <- st_sample(x, type = "thomas")) 793s + try(pts <- st_sample(x, kappa = 1, mu = 10, type = "Thomas")) 793s + # points expected 793s + set.seed(1331) 793s + pts <- st_sample(x, kappa = 1, mu = 10, scale = 0.1, type = "Thomas") 793s + #plot(x) 793s + #plot(pts, add = TRUE) 793s + pts 793s + 793s + # see https://github.com/r-spatial/sf/issues/1233 793s + # png("/tmp/spa%03d.png") 793s + 793s + p1 = st_point(0:1) 793s + p2 = st_point(1:2) 793s + p3 = st_point(c(-1,2)) 793s + p = st_sfc(p1, p2, p3) 793s + as.ppp(p) 793s + try(as.ppp(st_set_crs(p, 4326))) 793s + 793s + sf = st_sf(geom = p) 793s + try(as.ppp(sf)) 793s + sf = st_sf(a = 1:3, geom = p) 793s + as.ppp(sf) 793s + sf = st_sf(a = 1:3, b=3:1, geom = p) 793s + as.ppp(sf) # warns 793s + 793s + w = st_as_sfc(st_bbox(st_sfc(p1, p2))) 793s + sf = st_sf(a = 1:3, geom = p) 793s + (p0 = rbind(st_sf(a = 0, geom = w), sf)) 793s + try(as.ppp(p0)) # errors: one point outside window 793s + 793s + w = st_as_sfc(st_bbox(p)) 793s + sf = st_sf(a = 1:3, geom = p) 793s + (p0 = rbind(st_sf(a = 0, geom = w), sf)) 793s + as.ppp(p0) 793s + 793s + # as.owin.sf, as.owin.sfc_* 793s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), check_ring_dir = TRUE, quiet = TRUE) 793s + try(as.owin(nc)) # should be projected 793s + nc = st_transform(nc, 32119) 793s + plot(as.owin(nc), col = 'grey') 793s + plot(as.owin(st_geometry(nc)), col = 'grey') 793s + 793s + sq = rbind(c(-1,-1), c(1, -1), c(1,1), c(-1,1), c(-1,-1)) 793s + pol = st_polygon(list(0.5 * sq, sq[5:1,] * 0.45)) # w hole 793s + plot(as.owin(pol), col = 'grey') 793s + plot(as.owin(st_sfc(pol)), col = 'grey') 793s + mpol = st_multipolygon(list( 793s + list(sq, sq[5:1,] * 0.9), 793s + list(sq * 2, sq[5:1,] * 1.8))) 793s + plot(as.owin(mpol), col = 'grey') 793s + plot(as.owin(st_sfc(mpol)), col = 'grey') 793s + plot(as.owin(st_sfc(pol, mpol)), col = 'grey') 793s + plot(as.owin(st_sf(a=1:2, st_sfc(pol, mpol))), col = 'grey') 793s + (o = as.owin(st_sf(a=1:2, st_sfc(pol, mpol)))) 793s + st_as_sfc(o) 793s + 793s + plot(st_as_sfc(o), col = 'blue', main = 'st_as_sfc(o)') 793s + plot(st_as_sf(o), col = 'blue', main = 'st_as_sf(o)') 793s + 793s + data(japanesepines) 793s + st_as_sf(japanesepines) # warns about multiplier 793s + jp = rescale(japanesepines) 793s + st_as_sf(jp) # No warning 793s + 793s + data(nztrees) 793s + qNZ <- quadratcount(nztrees, nx=4, ny=3) 793s + ts = as.tess(qNZ) 793s + plot(st_as_sfc(ts)) 793s + 793s + ls = st_linestring(rbind(c(0,0), c(1,1), c(2,0))) 793s + plot(as.psp(ls)) 793s + mls = st_multilinestring(list(rbind(c(0,0), c(1,1), c(2,0)), rbind(c(3,3), c(4,2)))) 793s + plot(as.psp(mls)) 793s + 793s + plot(as.psp(st_sfc(ls))) 793s + plot(as.psp(st_sfc(mls))) 793s + plot(as.psp(st_sfc(ls, mls))) 793s + 793s + sf = st_sf(st_cast(st_sfc(ls, mls), "MULTILINESTRING"), marks = 1:2, foo = 2:1) 793s + as.psp(sf) # picks marks itself 793s + as.psp(sf, marks = 5:1) 793s + 793s + (x = st_as_sf(as.psp(sf))) 793s + (y = st_as_sfc(as.psp(sf))) 793s + all.equal(st_geometry(x), y) 793s + } 796s spatstat.geom 3.2-8 796s spatstat.random 3.2-2 799s Simple feature collection with 51 features and 1 field 799s Geometry type: GEOMETRY 799s Dimension: XY 799s Bounding box: xmin: 123829.8 ymin: 14740.06 xmax: 930518.6 ymax: 318255.5 799s CRS: NA 799s First 10 features: 799s label geom 799s 1 window MULTIPOLYGON (((886135.8 31... 799s 2 point POINT (339121.1 257811.6) 799s 3 point POINT (827440.4 246568.3) 799s 4 point POINT (451339.2 207943.6) 799s 5 point POINT (268749.7 203323.4) 799s 6 point POINT (516676.5 198556.1) 799s 7 point POINT (692366 238643.1) 799s 8 point POINT (843278.5 287241.6) 799s 9 point POINT (648477.7 235466.6) 799s 10 point POINT (852593 267248.3) 799s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon) : 799s rthomas is not an exported function from spatstat.random. 799s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon) : 799s The spatstat function rThomas did not return a valid result. Consult the help file. 799s Error message from spatstat: 799s Error in spatstat_fun(..., win = spatstat.geom::as.owin(x)) : 799s argument "scale" is missing, with no default 799s 799s Error : Only projected coordinates may be converted to spatstat class objects 799s Error in `marks<-.ppp`(`*tmp*`, value = value) : 799s number of rows of data frame != number of points 799s In addition: Warning messages: 799s 1: In as.ppp.sf(sf) : only first attribute column is used for marks 799s 2: 2 points were rejected as lying outside the specified window 799s Error : Only projected coordinates may be converted to spatstat class objects 800s [1] TRUE 800s Warning message: 800s In st_as_sfc.owin(spatstat.geom::as.owin(x)) :> 800s The spatstat object has an measurement unit multiplier != 1. Consider rescaling before converting. 800s 801s BEGIN TEST stars.R 801s 801s R version 4.3.2 (2023-10-31) -- "Eye Holes" 801s Copyright (C) 2023 The R Foundation for Statistical Computing 801s Platform: aarch64-unknown-linux-gnu (64-bit) 801s 801s R is free software and comes with ABSOLUTELY NO WARRANTY. 801s You are welcome to redistribute it under certain conditions. 801s Type 'license()' or 'licence()' for distribution details. 801s 801s R is a collaborative project with many contributors. 801s Type 'contributors()' for more information and 801s 'citation()' on how to cite R or R packages in publications. 801s 801s Type 'demo()' for some demos, 'help()' for on-line help, or 801s 'help.start()' for an HTML browser interface to help. 801s Type 'q()' to quit R. 801s 801s > suppressPackageStartupMessages(library(sf)) 804s > Warning message: 804s package 'sf' was built under R version 4.3.3 804s 804s > tif = system.file("tif/geomatrix.tif", package = "sf") 804s > 804s > gdal_metadata(tif) 804s [1] "AREA_OR_POINT=Point" 804s > gdal_metadata(tif, NA_character_) 804s [1] "IMAGE_STRUCTURE" "DERIVED_SUBDATASETS" "" 804s > try(gdal_metadata(tif, "wrongDomain")) 804s > gdal_metadata(tif, c("IMAGE_STRUCTURE")) 804s $INTERLEAVE 804s [1] "BAND" 804s 804s attr(,"class") 804s [1] "gdal_metadata" 804s > try(length(gdal_metadata(tif, c("DERIVED_SUBDATASETS")))) # fails on Fedora 26 804s [1] 2 804s > 804s > if (require(stars, quietly = TRUE)) { 804s + tif = system.file("tif/geomatrix.tif", package = "sf") 804s + r = read_stars(tif) 804s + d = (st_dimensions(r)) 804s + gt = c(1841001.75, 1.5, -5, 1144003.25, -5, -1.5) 804s + x1 = st_as_sfc(d, as_points = TRUE, use_cpp = TRUE, geotransform = gt) 804s + x2 = st_as_sfc(d, as_points = TRUE, use_cpp = FALSE, geotransform = gt) 804s + print(identical(x1, x2)) 804s + y1 = st_as_sfc(d, as_points = FALSE, use_cpp = TRUE, geotransform = gt) 804s + y2 = st_as_sfc(d, as_points = FALSE, use_cpp = FALSE, geotransform = gt) 804s + print(identical(y1, y2)) 804s + Error in gdal_metadata(tif, "wrongDomain") : 804s domain_item[1] not found in available metadata domains 804s 804s + # rectilinear grid: 804s + m = matrix(1:20, nrow = 5, ncol = 4) 804s + x = c(0,0.5,1,2,4,5) 804s + y = c(0.3,0.5,1,2,2.2) 804s + r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y, .raster = c("x", "y"))) 804s + print(st_as_sfc(st_dimensions(r), as_points = TRUE)) 804s + print(st_as_sfc(st_dimensions(r), as_points = FALSE)) 804s + 804s + # curvilinear grid: 804s + lon = st_as_stars(matrix(1:5, 4, 5, byrow = TRUE)) 804s + lat = st_as_stars(matrix(1:4, 4, 5)) 804s + ll = c(X1 = lon, X2 = lat) 804s + curv = st_as_stars(st_as_stars(t(m)), curvilinear = setNames(ll, c("X1", "X2"))) 804s + print(st_as_sfc(st_dimensions(curv), as_points = TRUE)) 804s + print(st_as_sfc(st_dimensions(curv), as_points = FALSE)) 804s + 804s + demo(nc, echo = FALSE, ask = FALSE) 804s + print(x <- st_rasterize(nc)) # default grid: 804s + print(p <- st_as_sf(x, as_points = FALSE)) # polygonize: follow raster boundaries 804s + print(p <- st_as_sf(x, as_points = FALSE, use_integer = TRUE)) # polygonize integers: follow raster boundaries 804s + print(try(p <- st_as_sf(x, as_points = TRUE))) # polygonize: contour, requies GDAL >= 2.4.0 804s + if (utils::packageVersion("stars") >= "0.2-1") { 804s + write_stars(read_stars(tif), tempfile(fileext = ".tif")) 804s + write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif")) 804s + write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"), chunk_size = c(200,200)) 804s + na.tif = read_stars(system.file("tif/na.tif", package = "stars")) 804s + write_stars(na.tif, "na.tif") 804s + write_stars(na.tif, "na.tif", NA_value = -999) 804s + na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999) 804s + write_stars(na.tif, "na.tif") 804s + write_stars(na.tif, "na.tif", NA_value = -999) 804s + na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999, proxy = TRUE) 804s + write_stars(na.tif, "na.tif") 804s + write_stars(na.tif, "na.tif", NA_value = -999) 804s + } 804s + # https://github.com/mtennekes/tmap/issues/368 804s + if (utils::packageVersion("stars") > "0.4-0") { 804s + lc = system.file('tif/lc.tif', package = 'stars') 804s + if (lc != "") { 804s + r = read_stars(lc, RAT = "Land Cover Class") 804s + r <- droplevels(r) 804s + } 804s + } 804s + } 804s [1] TRUE 804s [1] TRUE 804s Geometry set for 20 features 804s Geometry type: POINT 804s Dimension: XY 804s Bounding box: xmin: 0.25 ymin: 0.4 xmax: 4.5 ymax: 2.1 804s CRS: NA 804s First 5 geometries: 804s POINT (0.25 0.4) 804s POINT (0.75 0.4) 804s POINT (1.5 0.4) 804s POINT (3 0.4) 804s POINT (4.5 0.4) 804s POLYGON ((0 0.3, 0.5 0.3, 0.5 0.5, 0 0.5, 0 0.3)) 804s POLYGON ((0.5 0.3, 1 0.3, 1 0.5, 0.5 0.5, 0.5 0... 804s POLYGON ((1 0.3, 2 0.3, 2 0.5, 1 0.5, 1 0.3)) 804s POLYGON ((2 0.3, 4 0.3, 4 0.5, 2 0.5, 2 0.3)) 804s POLYGON ((4 0.3, 5 0.3, 5 0.5, 4 0.5, 4 0.3)) 804s Geometry set for 20 features 804s Geometry type: POLYGON 804s Dimension: XY 804s Bounding box: xmin: 0 ymin: 0.3 xmax: 5 ymax: 2.2 804s CRS: NA 804s First 5 geometries: 804s Geometry set for 20 features 804s Geometry type: POINT 805s Dimension: XY 805s Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 4 805s Geodetic CRS: WGS 84 (CRS84) 805s First 5 geometries: 805s POINT (1 1) 805s POINT (1 2) 805s POINT (1 3) 805s POINT (1 4) 805s POINT (2 1) 805s Geometry set for 20 features 805s Geometry type: POLYGON 805s Dimension: XY 805s Bounding box: xmin: 0.5 ymin: 0.5 xmax: 5.5 ymax: 4.5 805s Geodetic CRS: WGS 84 (CRS84) 805s First 5 geometries: 805s POLYGON ((0.5 0.5, 0.5 1.5, 1.5 1.5, 1.5 0.5, 0... 805s POLYGON ((0.5 1.5, 0.5 2.5, 1.5 2.5, 1.5 1.5, 0... 805s POLYGON ((0.5 2.5, 0.5 3.5, 1.5 3.5, 1.5 2.5, 0... 805s POLYGON ((0.5 3.5, 0.5 4.5, 1.5 4.5, 1.5 3.5, 0... 805s POLYGON ((1.5 0.5, 1.5 1.5, 2.5 1.5, 2.5 0.5, 1... 806s stars object with 2 dimensions and 12 attributes 806s attribute(s): 807s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 807s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 807s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 807s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 807s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 807s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 807s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 807s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 807s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 807s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 807s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 807s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 807s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 807s dimension(s): 807s from to offset delta refsys point x/y 807s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 807s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 808s Simple feature collection with 34097 features and 12 fields 808s Geometry type: POLYGON 809s Dimension: XY 809s Bounding box: xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965 809s Geodetic CRS: NAD27 809s First 10 features: 809s AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79 809s 1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s 10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 809s SID79 NWBIR79 geometry 809s 1 0 19 POLYGON ((-81.66757 36.5896... 809s 2 0 19 POLYGON ((-81.64833 36.5896... 809s 3 0 19 POLYGON ((-81.62908 36.5896... 809s 4 0 19 POLYGON ((-81.60983 36.5896... 809s 5 0 19 POLYGON ((-81.59058 36.5896... 809s 6 0 19 POLYGON ((-81.57133 36.5896... 809s 7 0 19 POLYGON ((-81.55208 36.5896... 809s 8 0 19 POLYGON ((-81.53283 36.5896... 809s 9 0 19 POLYGON ((-81.51359 36.5896... 809s 10 0 19 POLYGON ((-81.49434 36.5896... 810s Simple feature collection with 34097 features and 12 fields 810s Geometry type: POLYGON 810s Dimension: XY 810s Bounding box: xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965 810s Geodetic CRS: NAD27 810s First 10 features: 810s AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79 810s 1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s 10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 810s SID79 NWBIR79 geometry 810s 1 0 19 POLYGON ((-81.66757 36.5896... 810s 2 0 19 POLYGON ((-81.64833 36.5896... 810s 3 0 19 POLYGON ((-81.62908 36.5896... 810s 4 0 19 POLYGON ((-81.60983 36.5896... 810s 5 0 19 POLYGON ((-81.59058 36.5896... 810s 6 0 19 POLYGON ((-81.57133 36.5896... 810s 7 0 19 POLYGON ((-81.55208 36.5896... 810s 8 0 19 POLYGON ((-81.53283 36.5896... 810s 9 0 19 POLYGON ((-81.51359 36.5896... 810s 10 0 19 POLYGON ((-81.49434 36.5896... 811s Simple feature collection with 34097 features and 12 fields 811s Geometry type: POINT 812s Dimension: XY 812s Bounding box: xmin: -84.31423 ymin: 33.88525 xmax: -75.45997 ymax: 36.58003 812s Geodetic CRS: NAD27 812s First 10 features: 812s AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79 812s 1 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 2 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 3 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 4 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 5 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 6 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 7 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 8 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 9 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s 10 0.114 1.442 1825 1825 37009 5 1091 1 10 1364 812s SID79 NWBIR79 geometry 812s 1 0 19 POINT (-81.65795 36.58003) 812s 2 0 19 POINT (-81.6387 36.58003) 812s 3 0 19 POINT (-81.61945 36.58003) 812s 4 0 19 POINT (-81.6002 36.58003) 812s 5 0 19 POINT (-81.58096 36.58003) 812s 6 0 19 POINT (-81.56171 36.58003) 812s 7 0 19 POINT (-81.54246 36.58003) 812s 8 0 19 POINT (-81.52321 36.58003) 812s 9 0 19 POINT (-81.50396 36.58003) 812s 10 0 19 POINT (-81.48471 36.58003) 812s 812s 812s 812s 812s > 812s > r = gdal_read(tif) 812s > gt = c(0,1,0,0,0,1) 812s > gdal_inv_geotransform(gt) 812s [1] 0 1 0 0 0 1 812s > rc = expand.grid(x=1:3, y = 1:3) 812s > #(xy = xy_from_colrow(rc, gt)) 812s > #xy_from_colrow(xy, gt, inverse = TRUE) 812s > crs <- gdal_crs(tif) 812s > 812s > try(gdal_metadata("foo")) 812s [1] NA 812s > gdal_metadata(tif) 812s [1] "AREA_OR_POINT=Point" 812s > 812s BEGIN TEST testthat.R 812s 812s R version 4.3.2 (2023-10-31) -- "Eye Holes" 812s Copyright (C) 2023 The R Foundation for Statistical Computing 812s Platform: aarch64-unknown-linux-gnu (64-bit) 812s 812s R is free software and comes with ABSOLUTELY NO WARRANTY. 812s You are welcome to redistribute it under certain conditions. 812s Type 'license()' or 'licence()' for distribution details. 812s 812s R is a collaborative project with many contributors. 812s Type 'contributors()' for more information and 812s 'citation()' on how to cite R or R packages in publications. 812s 812s Type 'demo()' for some demos, 'help()' for on-line help, or 812s 'help.start()' for an HTML browser interface to help. 812s Type 'q()' to quit R. 812s 812s > if (require(testthat, quietly = TRUE)) { 812s + suppressPackageStartupMessages(library(sf)) 812s + test_check("sf") 812s + } 819s Coordinate Reference System: 819s User input: EPSG:4326 819s wkt: 819s GEOGCRS["WGS 84", 819s ENSEMBLE["World Geodetic System 1984 ensemble", 819s MEMBER["World Geodetic System 1984 (Transit)"], 819s MEMBER["World Geodetic System 1984 (G730)"], 819s MEMBER["World Geodetic System 1984 (G873)"], 819s MEMBER["World Geodetic System 1984 (G1150)"], 819s MEMBER["World Geodetic System 1984 (G1674)"], 819s MEMBER["World Geodetic System 1984 (G1762)"], 819s MEMBER["World Geodetic System 1984 (G2139)"], 819s ELLIPSOID["WGS 84",6378137,298.257223563, 819s LENGTHUNIT["metre",1]], 819s ENSEMBLEACCURACY[2.0]], 819s PRIMEM["Greenwich",0, 819s ANGLEUNIT["degree",0.0174532925199433]], 819s CS[ellipsoidal,2], 819s AXIS["geodetic latitude (Lat)",north, 819s ORDER[1], 819s ANGLEUNIT["degree",0.0174532925199433]], 819s AXIS["geodetic longitude (Lon)",east, 819s ORDER[2], 819s ANGLEUNIT["degree",0.0174532925199433]], 819s USAGE[ 819s SCOPE["Horizontal component of 3D system."], 819s AREA["World."], 819s BBOX[-90,-180,90,180]], 819s ID["EPSG",4326]] 819s Coordinate Reference System: 819s No user input 819s wkt: 819s GEOGCRS["WGS 84", 819s ENSEMBLE["World Geodetic System 1984 ensemble", 819s MEMBER["World Geodetic System 1984 (Transit)"], 819s MEMBER["World Geodetic System 1984 (G730)"], 819s MEMBER["World Geodetic System 1984 (G873)"], 819s MEMBER["World Geodetic System 1984 (G1150)"], 819s MEMBER["World Geodetic System 1984 (G1674)"], 819s MEMBER["World Geodetic System 1984 (G1762)"], 819s MEMBER["World Geodetic System 1984 (G2139)"], 819s ELLIPSOID["WGS 84",6378137,298.257223563, 819s LENGTHUNIT["metre",1]], 819s ENSEMBLEACCURACY[2.0]], 819s PRIMEM["Greenwich",0, 819s ANGLEUNIT["degree",0.0174532925199433]], 819s CS[ellipsoidal,2], 819s AXIS["geodetic latitude (Lat)",north, 819s ORDER[1], 819s ANGLEUNIT["degree",0.0174532925199433]], 819s AXIS["geodetic longitude (Lon)",east, 819s ORDER[2], 819s ANGLEUNIT["degree",0.0174532925199433]], 819s USAGE[ 819s SCOPE["Horizontal component of 3D system."], 819s AREA["World."], 819s BBOX[-90,-180,90,180]], 819s ID["EPSG",4326]] 839s Cannot open layer foo 840s Reading layer `nospatial' from data source 840s `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG' 840s Reading layer `nospatial' from data source 840s `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG' 842s OGR: Unsupported geometry type 850s Failed to create feature 1 in x 850s Failed to create feature 1 in x 851s [ FAIL 0 | WARN 8 | SKIP 18 | PASS 714 ] 851s 851s == Skipped tests (18) ========================================================== 852s * !sf_use_s2() is not TRUE (1): 'test_geos.R:20:5' 852s * RPostgres cannot be loaded (3): 'test_postgis_ODBC.R:1:1', 852s 'test_postgis_RPostgreSQL.R:1:1', 'test_postgis_RPostgres.R:12:1' 852s * Sys.getenv("USER") %in% c("edzer", "travis") is not TRUE (3): 852s 'test_gdal.R:55:3', 'test_write.R:47:3', 'test_write.R:130:3' 852s * empty test (6): 'test-normalize.R:29:1', 'test_crs.R:66:1', 852s 'test_crs.R:99:1', 'test_project.R:1:1', 'test_read.R:7:1', 'test_sf.R:52:1' 852s * sf_extSoftVersion()[["GDAL"]] < "2.5.0" && sf_extSoftVersion()[["proj.4"]] < 852s (1): 'test_crs.R:61:3' 852s * sf_extSoftVersion()[["GDAL"]] < "2.5.0" is not TRUE (1): 'test_gdal.R:46:3' 852s * sf_extSoftVersion()[["proj.4"]] < "6.0.0" is not TRUE (3): 'test_crs.R:44:3', 852s 'test_crs.R:49:3', 'test_crs.R:55:3' 852s 852s [ FAIL 0 | WARN 8 | SKIP 18 | PASS 714 ] 853s Warning message: 853s > package 'sf' was built under R version 4.3.3 853s 853s BEGIN TEST units.R 853s 853s R version 4.3.2 (2023-10-31) -- "Eye Holes" 853s Copyright (C) 2023 The R Foundation for Statistical Computing 853s Platform: aarch64-unknown-linux-gnu (64-bit) 853s 853s R is free software and comes with ABSOLUTELY NO WARRANTY. 853s You are welcome to redistribute it under certain conditions. 853s Type 'license()' or 'licence()' for distribution details. 853s 853s R is a collaborative project with many contributors. 853s Type 'contributors()' for more information and 853s 'citation()' on how to cite R or R packages in publications. 853s 853s Type 'demo()' for some demos, 'help()' for on-line help, or 853s 'help.start()' for an HTML browser interface to help. 853s Type 'q()' to quit R. 853s 854s > suppressPackageStartupMessages(library(sf)) 857s > suppressPackageStartupMessages(library(units)) 857s Warning message: 857s package 'sf' was built under R version 4.3.3 857s > 857s > if (utils::packageVersion("units") >= "0.5-0") 857s + units_options(auto_convert_names_to_symbols = FALSE) 857s > 857s > st_crs(4326)$ud_unit 857s 1 [degree] 857s > 857s > u = names(sf:::udunits_from_proj)[1:21] 857s > 857s > unrecognized = NULL 857s > out = sapply(u, function(x) { 857s + p4s = paste0("+proj=laea +units=", x) 857s + cat(x, ": ") 857s + ret = try(st_crs(p4s)$ud_unit, silent = TRUE) 857s + if (! inherits(ret, "try-error")) 857s + print(ret) 857s + else 857s + unrecognized = c(unrecognized, x) 857s + }) 857s km : 1 [km] 857s m : 1 [m] 857s dm : 1 [dm] 857s cm : 1 [cm] 857s mm : 1 [mm] 857s kmi : 1 [nautical_mile] 857s in : 1 [inch] 857s ft : 1 [foot] 857s yd : 1 [yard] 857s mi : 1 [mi] 857s fath : 1 [fathom] 857s ch : 1 [chain] 857s link : 1 [link] 857s us-in : 1 [us_in] 857s us-ft : 1 [US_survey_foot] 857s us-yd : 1 [US_survey_yard] 857s us-ch : 1 [chain] 857s us-mi : 1 [US_survey_mile] 857s ind-yd : 1 [ind_yd] 857s ind-ft : 1 [ind_ft] 857s ind-ch : 1 [ind_ch] 857s > 857s > if (length(unrecognized)) 857s + print(paste("unrecognized units:", paste(unrecognized, collapse = ", "), ": older GDAL version?")) 857s > 857s BEGIN TEST wkb.R 858s 858s R version 4.3.2 (2023-10-31) -- "Eye Holes" 858s Copyright (C) 2023 The R Foundation for Statistical Computing 858s Platform: aarch64-unknown-linux-gnu (64-bit) 858s 858s R is free software and comes with ABSOLUTELY NO WARRANTY. 858s You are welcome to redistribute it under certain conditions. 858s Type 'license()' or 'licence()' for distribution details. 858s 858s R is a collaborative project with many contributors. 858s Type 'contributors()' for more information and 858s 'citation()' on how to cite R or R packages in publications. 858s 858s Type 'demo()' for some demos, 'help()' for on-line help, or 858s 'help.start()' for an HTML browser interface to help. 858s Type 'q()' to quit R. 858s 858s > suppressPackageStartupMessages(library(sf)) 861s Warning message: 861s package 'sf' was built under R version 4.3.3 861s > round_trip = function(x, EWKB = FALSE, pureR = FALSE) { 861s + if (inherits(x, "sfg")) 861s + x = st_sfc(x) 861s + wkb = st_as_binary(x, EWKB = EWKB, pureR = pureR) 861s + class(wkb) = "WKB" 861s + # print(wkb) 861s + y = st_as_sfc(wkb, EWKB = EWKB, pureR = pureR) 861s + a = all.equal(x, y) 861s + if (length(a) == 1 && is.logical(a) && a) 861s + TRUE 861s + else { 861s + print(x) 861s + print(wkb) 861s + print(y) 861s + FALSE 861s + } 861s + } 861s > 861s > p3 = st_point(c(0,0,0)) 861s > p3m = st_point(c(0,0,0), "XYM") 861s > p4 = st_point(c(0,0,0,0)) 861s > p2 = st_point(c(0,0)) 861s > ls = st_linestring(matrix(1:6,3)) 861s > mp = st_multipoint(matrix(1:6,3)) 861s > 861s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE) 861s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE) 861s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE) 861s > pts = list(outer, hole1, hole2) 861s > pl1 = st_polygon(pts) 861s > 861s > pol1 = list(outer, hole1, hole2) 861s > pol2 = list(outer + 12, hole1 + 12) 861s > pol3 = list(outer + 24) 861s > mp1 = st_multipolygon(list(pol1,pol2,pol3)) 861s > 861s > ml1 = st_multilinestring(list(outer, hole1, hole2)) 861s > gc = st_geometrycollection(list(p2, ls, pl1, mp1)) 861s > 861s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE) 861s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 861s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE, pureR = TRUE) 861s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 861s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE) 861s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 861s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE, pureR = TRUE) 861s [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE 861s > 861s > rawToHex(st_as_binary(st_multipoint(matrix(1:6,3)))) 861s [1] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840" 861s > rawToHex(st_as_binary(st_sfc(st_point(c(0,1)), st_multipoint(matrix(1:6,3))))) 861s [1] "01010000000000000000000000000000000000f03f" 861s [2] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840" 861s > try(rawToHex("error")) 861s Error in rawToHex("error") : 861s not implemented for objects of class character 861s > 861s > # debug roundtrips sf -> GDAL -> sf; 861s > # the first WKT is what GDAL reports, and will lack M 861s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYZ"))))) 861s LINESTRING (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18) 861s [1] "LINESTRING Z (1 7 13, 2 8 14, 3 9 15, 4 10 16, 5 11 17, 6 12 18)" 861s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYZ"))))) 861s MULTIPOINT (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18) 861s [1] "MULTIPOINT Z ((1 7 13), (2 8 14), (3 9 15), (4 10 16), (5 11 17), (6 12 18))" 861s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYZ"))))) 861s POINT (0 0 0) 861s [1] "POINT Z (0 0 0)" 861s > 861s > if (sf:::CPL_gdal_version() >= "2.1.0") { # address GDAL/Fedora (gdal 2.0.2) error: 861s + st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYM"))))) 861s + st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYM"))))) 861s + st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYM"))))) 861s + } else { 861s + "(output expected when gdal <= 2.1.0, e.g. CRAN/fedora)" 861s + } 861s LINESTRING (1 7,2 8,3 9,4 10,5 11,6 12) 861s MULTIPOINT (1 7,2 8,3 9,4 10,5 11,6 12) 861s POINT (0 0) 861s [1] "POINT M (0 0 0)" 861s > 861s autopkgtest [03:57:06]: test run-unit-test: -----------------------] 862s run-unit-test PASS 862s autopkgtest [03:57:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 863s autopkgtest [03:57:08]: test pkg-r-autopkgtest: preparing testbed 1227s autopkgtest [04:03:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1228s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1230s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2782 kB] 1232s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [447 kB] 1232s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 1233s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [39.7 kB] 1233s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [598 kB] 1233s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 1233s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 1233s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 1233s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3175 kB] 1233s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 1233s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [41.8 kB] 1233s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 1261s Fetched 7237 kB in 10s (708 kB/s) 1262s Reading package lists... 1296s Reading package lists... 1299s Building dependency tree... 1299s Reading state information... 1303s Calculating upgrade... 1305s The following packages will be REMOVED: 1305s libssl3 1305s The following NEW packages will be installed: 1305s libssl3t64 1305s The following packages will be upgraded: 1305s cloud-init firmware-sof-signed gdisk klibc-utils libklibc openssl zlib1g 1306s 7 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 1306s Need to get 7732 kB of archives. 1306s After this operation, 89.1 kB of additional disk space will be used. 1306s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 1307s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 1307s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu1 [61.7 kB] 1307s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 firmware-sof-signed all 2023.12.1-1ubuntu1 [3906 kB] 1308s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 klibc-utils arm64 2.0.13-4 [114 kB] 1308s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libklibc arm64 2.0.13-4 [51.4 kB] 1308s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 cloud-init all 24.1.1-0ubuntu1 [597 kB] 1308s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 gdisk arm64 1.0.10-1 [249 kB] 1312s Preconfiguring packages ... 1313s Fetched 7732 kB in 3s (2513 kB/s) 1316s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 1316s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 1316s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 1318s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 1318s wget depends on libssl3 (>= 3.0.0). 1318s u-boot-tools depends on libssl3 (>= 3.0.0). 1318s tnftp depends on libssl3 (>= 3.0.0). 1318s tcpdump depends on libssl3 (>= 3.0.0). 1318s systemd-resolved depends on libssl3 (>= 3.0.0). 1318s systemd depends on libssl3 (>= 3.0.0). 1318s sudo depends on libssl3 (>= 3.0.0). 1318s sbsigntool depends on libssl3 (>= 3.0.0). 1318s rsync depends on libssl3 (>= 3.0.0). 1318s python3-cryptography depends on libssl3 (>= 3.0.0). 1318s openssh-server depends on libssl3 (>= 3.0.10). 1318s openssh-client depends on libssl3 (>= 3.0.10). 1318s mtd-utils depends on libssl3 (>= 3.0.0). 1318s mokutil depends on libssl3 (>= 3.0.0). 1318s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 1318s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 1318s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 1318s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 1318s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 1318s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 1318s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 1318s libnvme1 depends on libssl3 (>= 3.0.0). 1318s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 1318s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 1318s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 1318s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 1318s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 1318s kmod depends on libssl3 (>= 3.0.0). 1318s dhcpcd-base depends on libssl3 (>= 3.0.0). 1318s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 1318s 1318s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75856 files and directories currently installed.) 1319s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 1319s Selecting previously unselected package libssl3t64:arm64. 1319s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75845 files and directories currently installed.) 1319s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 1319s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 1319s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 1319s Unpacking zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 1320s Setting up zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 1320s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 1320s Preparing to unpack .../firmware-sof-signed_2023.12.1-1ubuntu1_all.deb ... 1321s Unpacking firmware-sof-signed (2023.12.1-1ubuntu1) over (2.2.6-1ubuntu4) ... 1324s Preparing to unpack .../klibc-utils_2.0.13-4_arm64.deb ... 1324s Unpacking klibc-utils (2.0.13-4) over (2.0.13-2ubuntu1) ... 1325s Preparing to unpack .../libklibc_2.0.13-4_arm64.deb ... 1325s Unpacking libklibc:arm64 (2.0.13-4) over (2.0.13-2ubuntu1) ... 1325s Preparing to unpack .../cloud-init_24.1.1-0ubuntu1_all.deb ... 1329s Unpacking cloud-init (24.1.1-0ubuntu1) over (24.1-0ubuntu1) ... 1331s Preparing to unpack .../gdisk_1.0.10-1_arm64.deb ... 1331s Unpacking gdisk (1.0.10-1) over (1.0.9-2.1) ... 1332s Setting up cloud-init (24.1.1-0ubuntu1) ... 1349s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 1349s Setting up firmware-sof-signed (2023.12.1-1ubuntu1) ... 1349s Setting up gdisk (1.0.10-1) ... 1349s Setting up libklibc:arm64 (2.0.13-4) ... 1349s Setting up klibc-utils (2.0.13-4) ... 1349s Setting up openssl (3.0.13-0ubuntu1) ... 1349s Processing triggers for libc-bin (2.39-0ubuntu2) ... 1349s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1351s Processing triggers for man-db (2.12.0-3) ... 1360s Processing triggers for initramfs-tools (0.142ubuntu20) ... 1361s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 1361s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1605s System running in EFI mode, skipping. 1607s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1607s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1607s Reading package lists... 1609s Building dependency tree... 1609s Reading state information... 1614s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1621s sh: Attempting to set up Debian/Ubuntu apt sources automatically 1621s sh: Distribution appears to be Ubuntu 1658s Reading package lists... 1659s Building dependency tree... 1659s Reading state information... 1662s eatmydata is already the newest version (131-1). 1662s dbus is already the newest version (1.14.10-4ubuntu1). 1662s dbus set to manually installed. 1662s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1662s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1662s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1664s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1664s Reading package lists... 1664s Building dependency tree... 1664s Reading state information... 1664s rng-tools-debian is already the newest version (2.4). 1664s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1665s Reading package lists... 1666s Building dependency tree... 1666s Reading state information... 1675s haveged is already the newest version (1.9.14-1ubuntu1). 1675s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1676s Reading package lists... 1677s Building dependency tree... 1677s Reading state information... 1680s The following packages will be REMOVED: 1680s cloud-init* python3-configobj* python3-debconf* 1684s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 1684s After this operation, 3252 kB disk space will be freed. 1684s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 1684s Removing cloud-init (24.1.1-0ubuntu1) ... 1690s Removing python3-configobj (5.0.8-3) ... 1700s Removing python3-debconf (1.5.86) ... 1701s Processing triggers for man-db (2.12.0-3) ... 1705s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75480 files and directories currently installed.) 1705s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 1714s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 1714s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 1719s Reading package lists... 1723s Building dependency tree... 1723s Reading state information... 1726s linux-generic is already the newest version (6.8.0-11.11+1). 1726s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1727s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 1727s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 1727s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 1727s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 1727s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 1762s Reading package lists... 1762s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 1762s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1762s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 1763s Reading package lists... 1765s Building dependency tree... 1765s Reading state information... 1772s Calculating upgrade... 1775s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1776s Reading package lists... 1778s Building dependency tree... 1778s Reading state information... 1783s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1784s autopkgtest [04:12:29]: rebooting testbed after setup commands that affected boot 1956s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1989s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 2014s autopkgtest [04:16:19]: testbed dpkg architecture: arm64 2034s Reading package lists... 2036s Building dependency tree... 2036s Reading state information... 2040s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 2041s Starting 2 pkgProblemResolver with broken count: 0 2041s Done 2043s Done 2045s Starting pkgProblemResolver with broken count: 0 2046s Starting 2 pkgProblemResolver with broken count: 0 2046s Done 2051s The following additional packages will be installed: 2051s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 2051s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 2051s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 2051s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 2051s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gdal-data gdal-plugins 2051s gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 2051s gfortran-aarch64-linux-gnu icu-devtools javascript-common libaec0 2051s libarmadillo12 libarpack2 libasan8 libatomic1 libblas-dev libblas3 libblosc1 2051s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10t64 2051s libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 2051s libfreexl1 libfyba0 libgcc-13-dev libgdal34t64 libgeos-c1t64 2051s libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev libgfortran5 libgif7 2051s libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 2051s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 2051s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 2051s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 2051s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 2051s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 2051s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 2051s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 2051s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 2051s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 2051s libmpc3 libmysqlclient21 libncurses-dev libnetcdf19t64 libnsl-dev libodbc2 2051s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 2051s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 2051s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 2051s libpng16-16t64 libpoppler134 libpq5 libproj25 libqhull-r8.0 libreadline-dev 2051s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 2051s libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 2051s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 2051s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 2051s libxrender1 libxss1 libxt6 linux-libc-dev littler mysql-common 2051s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 2051s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core 2051s r-base-dev r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bit 2051s r-cran-bit64 r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 2051s r-cran-class r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark 2051s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 2051s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 2051s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 2051s r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue 2051s r-cran-goftest r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv 2051s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 2051s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 2051s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-lwgeom 2051s r-cran-magrittr r-cran-maps r-cran-mass r-cran-matrix r-cran-memoise 2051s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 2051s r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 2051s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise 2051s r-cran-processx r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr 2051s r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp 2051s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rpart 2051s r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass 2051s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 2051s r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 2051s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 2051s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils 2051s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 2051s r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr 2051s r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs 2051s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 2051s r-cran-xtable r-cran-yaml rpcsvc-proto unixodbc-common unzip x11-common 2051s xdg-utils zip zlib1g-dev 2051s Suggested packages: 2051s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 2051s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 2051s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 2051s | lighttpd | httpd liblapack-doc glibc-doc geotiff-bin gdal-bin 2051s libgeotiff-epsg libhdf4-doc libhdf4-alt-dev hdf4-tools 2051s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 2051s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 2051s libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 2051s fonts-stix libjs-mathjax-doc liblcms2-utils liblzma-doc ncurses-doc 2051s odbc-postgresql tdsodbc ogdi-bin proj-bin readline-doc libstdc++-13-doc 2051s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 2051s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 2051s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 2051s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 2051s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 2051s texlive-extra-utils texinfo r-cran-roxygen2 r-cran-ff r-cran-spelling 2051s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png 2051s r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-markdown 2051s r-cran-magick r-cran-getopt r-cran-mapproj r-cran-mapdata r-cran-formattable 2051s r-cran-nanotime r-cran-palmerpenguins r-cran-vdiffr r-cran-inline 2051s r-cran-hmisc r-cran-rvest r-cran-nanoarrow r-cran-bench r-cran-here 2051s r-cran-hms r-cran-plm r-cran-zoo 2051s Recommended packages: 2051s bzip2-doc manpages manpages-dev libc-devtools proj-bin libheif-plugin-aomenc 2051s libheif-plugin-x265 node-jquery libpng-tools poppler-data r-recommended 2051s r-doc-html r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-spdata 2051s r-cran-tinytest r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami 2051s r-cran-xml2 r-cran-dt r-cran-bench r-cran-decor r-cran-lobstr 2051s r-cran-progress r-cran-spelling r-cran-webutils r-cran-gh r-cran-broom 2051s r-cran-dbplyr r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-hexbin 2051s r-cran-hmisc r-cran-mapproj r-cran-multcomp r-cran-profvis r-cran-quantreg 2051s r-cran-ragg r-cran-svglite r-cran-vdiffr r-cran-testit r-cran-cairo 2051s r-cran-markdown r-cran-jpeg r-cran-png r-cran-readr r-cran-r.rsp 2051s r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-magick 2051s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 2051s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-geosphere 2051s r-cran-sodium r-cran-future r-cran-future.apply r-cran-lubridate 2051s r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-webfakes 2051s r-cran-cba r-cran-pingr r-cran-ncdf4 r-cran-igraph r-cran-gstat 2051s r-cran-fields r-cran-exactextractr r-cran-usethis r-cran-dygraphs 2051s r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-gert r-cran-hms 2051s r-cran-rvest r-cran-dichromat r-cran-sm r-cran-gsl r-cran-locfit 2051s r-cran-spatial r-cran-nleqslv r-cran-glmnet r-cran-pcict r-cran-rnetcdf 2051s r-cran-clue r-cran-cubelyr r-cran-fnn r-cran-ggforce r-cran-ggthemes 2051s r-cran-mapdata r-cran-ncdfgeom r-cran-ncmeta r-cran-plm r-cran-randomforest 2051s r-cran-spacetime r-cran-viridis r-cran-xts r-cran-zoo r-cran-xml 2051s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 2051s r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl 2051s libx11-protocol-perl x11-utils x11-xserver-utils 2054s The following packages will be REMOVED: 2054s libpng16-16 2054s The following NEW packages will be installed: 2054s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 2054s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 2054s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 2054s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 2054s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gdal-data gdal-plugins 2054s gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 2054s gfortran-aarch64-linux-gnu icu-devtools javascript-common libaec0 2054s libarmadillo12 libarpack2 libasan8 libatomic1 libblas-dev libblas3 libblosc1 2054s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcfitsio10t64 2054s libcrypt-dev libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 2054s libfreexl1 libfyba0 libgcc-13-dev libgdal34t64 libgeos-c1t64 2054s libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev libgfortran5 libgif7 2054s libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 2054s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 2054s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 2054s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 2054s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 2054s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 2054s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 2054s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 2054s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 2054s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 2054s libmpc3 libmysqlclient21 libncurses-dev libnetcdf19t64 libnsl-dev libodbc2 2054s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 2054s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 2054s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 2054s libpng16-16t64 libpoppler134 libpq5 libproj25 libqhull-r8.0 libreadline-dev 2054s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 2054s libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 2054s libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data 2054s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 2054s libxrender1 libxss1 libxt6 linux-libc-dev littler mysql-common 2054s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 2054s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin proj-data r-base-core 2054s r-base-dev r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bit 2054s r-cran-bit64 r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 2054s r-cran-class r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark 2054s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 2054s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 2054s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 2054s r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue 2054s r-cran-goftest r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv 2054s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 2054s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice 2054s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-lwgeom 2054s r-cran-magrittr r-cran-maps r-cran-mass r-cran-matrix r-cran-memoise 2054s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 2054s r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 2054s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise 2054s r-cran-processx r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr 2054s r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp 2054s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rpart 2054s r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass 2054s r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp 2054s r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 2054s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 2054s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils 2054s r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 2054s r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr 2054s r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs 2054s r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun 2054s r-cran-xtable r-cran-yaml rpcsvc-proto unixodbc-common unzip x11-common 2054s xdg-utils zip zlib1g-dev 2055s 0 upgraded, 313 newly installed, 1 to remove and 0 not upgraded. 2055s 1 not fully installed or removed. 2055s Need to get 312 MB of archives. 2055s After this operation, 1000 MB of additional disk space will be used. 2055s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 2056s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 2056s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 2059s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 2059s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 2059s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 2059s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 2060s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 2061s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 2061s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 2061s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 2062s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 2062s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 2062s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 2062s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 2062s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 2063s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 2063s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 2063s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 2063s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 2063s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 2066s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 2066s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 2066s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 2067s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 2067s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 2067s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 2067s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 2067s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 2067s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 2067s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 2068s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 2068s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 2068s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 2068s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 2068s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 2068s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 2069s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 2069s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 2069s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 2069s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 2069s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 2069s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 2069s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 2069s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 2078s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 2078s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 2078s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 2078s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 2079s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 2079s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 2079s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 2079s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 2079s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 2079s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 2079s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 2079s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 2079s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 2080s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 2080s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 2080s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 2080s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 2080s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gdal-data all 3.8.4+dfsg-3build1 [261 kB] 2080s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gdal-plugins arm64 3.8.4+dfsg-3build1 [24.6 kB] 2080s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 2080s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 2080s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 2080s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 2080s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 2080s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 2080s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libcfitsio10t64 arm64 4.3.1-1.1 [520 kB] 2081s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libminizip1t64 arm64 1:1.3.dfsg-3.1ubuntu1 [22.7 kB] 2081s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 2081s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 2081s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgeos3.12.1t64 arm64 3.12.1-3 [827 kB] 2081s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgeos-c1t64 arm64 3.12.1-3 [88.7 kB] 2081s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 proj-data all 9.4.0-1 [7885 kB] 2082s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libproj25 arm64 9.4.0-1 [1293 kB] 2082s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 2082s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 2082s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 2082s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 2082s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 2082s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 2082s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 2082s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 2082s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 2082s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 2082s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 2082s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmlbase1t64 arm64 1.3.0-12 [47.7 kB] 2083s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmldom1t64 arm64 1.3.0-12 [146 kB] 2083s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmlengine1t64 arm64 1.3.0-12 [68.1 kB] 2083s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 2083s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 2083s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 2083s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu1 [471 kB] 2083s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 2083s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 2083s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 2083s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 2083s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 2083s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 2086s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 2086s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 2087s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 2087s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 2087s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 2087s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libspatialite8t64 arm64 5.1.0-3 [1815 kB] 2088s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.2 [874 kB] 2088s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgdal34t64 arm64 3.8.4+dfsg-3build1 [7900 kB] 2091s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1build1 [2990 kB] 2092s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 2097s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 2098s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 2098s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 2098s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 2098s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 2098s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 2098s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 2098s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 2098s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 2098s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 2098s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 2099s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 2099s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 2099s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 2099s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 2099s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 2099s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 2099s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 2099s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 2099s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 2099s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 2099s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 2099s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 2099s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 2100s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 2100s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 2100s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 2104s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 2104s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 2104s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 2104s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 2104s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 2104s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 2105s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 2105s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 2105s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 2106s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 2106s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 2106s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 2106s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 2106s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 2106s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 2106s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 2106s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 2106s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 2107s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 2107s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 2107s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 2107s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 2107s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 2107s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 2107s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 2108s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 2108s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 2108s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 2108s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lwgeom arm64 0.2-13-3 [382 kB] 2108s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 2109s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 2109s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 2109s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-terra arm64 1.7-65-1 [3587 kB] 2110s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 2110s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 2110s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 2110s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 2110s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 2110s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 2111s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 2111s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 2111s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 2111s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 2111s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 2111s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 2111s Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 2111s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 2111s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 2111s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 2112s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 2112s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 2112s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 2112s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 2112s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 2112s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 2112s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 2112s Get:196 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 2113s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 2113s Get:198 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 2113s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 2117s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 2117s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 2117s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 2117s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 2118s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 2118s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 2118s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 2118s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 2118s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 2118s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 2118s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 2118s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 2118s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 2118s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 2119s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 2119s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpostgresql arm64 0.7-6+dfsg-1 [374 kB] 2119s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 2119s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 2120s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 2120s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 2120s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 2120s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.utils arm64 3.0-4-1 [360 kB] 2120s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.data all 3.0-4-1 [4090 kB] 2120s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 2120s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-polyclip arm64 1.10-6-1 [110 kB] 2121s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.geom arm64 3.2-8-1 [3805 kB] 2121s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.random arm64 3.2-2-1 [1127 kB] 2121s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 2121s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 2121s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.sparse arm64 3.0-3-1 [214 kB] 2122s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 2122s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.explore arm64 3.2-5-1 [3264 kB] 2122s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 2123s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 2123s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.model arm64 3.2-8-1 [3289 kB] 2123s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat.linnet arm64 3.1-3-1 [1404 kB] 2123s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatstat arm64 3.0-7-1 [3817 kB] 2124s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 2124s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 2124s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 2124s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 2124s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 2124s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 2124s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 2124s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 2124s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 2124s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 2125s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 2125s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 2125s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 2125s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 2125s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 2125s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 2125s Get:253 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 2125s Get:254 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 2125s Get:255 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 2125s Get:256 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 2125s Get:257 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 2125s Get:258 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 2125s Get:259 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 2125s Get:260 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 2126s Get:261 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 2126s Get:262 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 2126s Get:263 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 2127s Get:264 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 2127s Get:265 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 2127s Get:266 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 2127s Get:267 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 2127s Get:268 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 2127s Get:269 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 2127s Get:270 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 2128s Get:271 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 2128s Get:272 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 2133s Get:273 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 2135s Get:274 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 2135s Get:275 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 2138s Get:276 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 2150s Get:277 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 2150s Get:278 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 2150s Get:279 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 2150s Get:280 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 2150s Get:281 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 2153s Get:282 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 2153s Get:283 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 2153s Get:284 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 2153s Get:285 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 2153s Get:286 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 2154s Get:287 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 2156s Get:288 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 2156s Get:289 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 2156s Get:290 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 2156s Get:291 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 2156s Get:292 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 2156s Get:293 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 2156s Get:294 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 2156s Get:295 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 2156s Get:296 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 2157s Get:297 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 2157s Get:298 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 2157s Get:299 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 2157s Get:300 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 2157s Get:301 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 2157s Get:302 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu1 [894 kB] 2157s Get:303 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 2157s Get:304 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 2157s Get:305 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 2157s Get:306 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 2157s Get:307 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 2159s Get:308 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 2159s Get:309 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 2159s Get:310 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 2159s Get:311 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 2159s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 2159s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 2175s Preconfiguring packages ... 2177s Fetched 312 MB in 1min 45s (2987 kB/s) 2177s Selecting previously unselected package zip. 2177s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75425 files and directories currently installed.) 2177s Preparing to unpack .../00-zip_3.0-13_arm64.deb ... 2177s Unpacking zip (3.0-13) ... 2178s Selecting previously unselected package unzip. 2178s Preparing to unpack .../01-unzip_6.0-28ubuntu3_arm64.deb ... 2178s Unpacking unzip (6.0-28ubuntu3) ... 2178s Selecting previously unselected package libpaper1:arm64. 2178s Preparing to unpack .../02-libpaper1_1.1.29_arm64.deb ... 2178s Unpacking libpaper1:arm64 (1.1.29) ... 2178s Selecting previously unselected package libpaper-utils. 2178s Preparing to unpack .../03-libpaper-utils_1.1.29_arm64.deb ... 2178s Unpacking libpaper-utils (1.1.29) ... 2178s Selecting previously unselected package xdg-utils. 2178s Preparing to unpack .../04-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 2178s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 2178s Selecting previously unselected package libblas3:arm64. 2178s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 2178s Unpacking libblas3:arm64 (3.12.0-3) ... 2179s Selecting previously unselected package fonts-dejavu-mono. 2179s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 2179s Unpacking fonts-dejavu-mono (2.37-8) ... 2179s Selecting previously unselected package fonts-dejavu-core. 2179s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 2180s Unpacking fonts-dejavu-core (2.37-8) ... 2180s Selecting previously unselected package fontconfig-config. 2180s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 2182s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 2182s Selecting previously unselected package libfontconfig1:arm64. 2183s Preparing to unpack .../09-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 2183s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2183s Selecting previously unselected package libpixman-1-0:arm64. 2183s Preparing to unpack .../10-libpixman-1-0_0.42.2-1_arm64.deb ... 2183s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 2183s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 2183s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 2183s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 2183s 2183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75647 files and directories currently installed.) 2184s Removing libpng16-16:arm64 (1.6.43-1) ... 2184s Selecting previously unselected package libpng16-16t64:arm64. 2185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75637 files and directories currently installed.) 2185s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_arm64.deb ... 2185s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 2185s Selecting previously unselected package libxcb-render0:arm64. 2185s Preparing to unpack .../001-libxcb-render0_1.15-1_arm64.deb ... 2185s Unpacking libxcb-render0:arm64 (1.15-1) ... 2186s Selecting previously unselected package libxcb-shm0:arm64. 2186s Preparing to unpack .../002-libxcb-shm0_1.15-1_arm64.deb ... 2186s Unpacking libxcb-shm0:arm64 (1.15-1) ... 2186s Selecting previously unselected package libxrender1:arm64. 2186s Preparing to unpack .../003-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 2186s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 2186s Selecting previously unselected package libcairo2:arm64. 2186s Preparing to unpack .../004-libcairo2_1.18.0-1_arm64.deb ... 2186s Unpacking libcairo2:arm64 (1.18.0-1) ... 2186s Selecting previously unselected package libgomp1:arm64. 2186s Preparing to unpack .../005-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 2186s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 2187s Selecting previously unselected package libjpeg-turbo8:arm64. 2187s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 2187s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2187s Selecting previously unselected package libjpeg8:arm64. 2187s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_arm64.deb ... 2187s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 2187s Selecting previously unselected package libgfortran5:arm64. 2187s Preparing to unpack .../008-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 2187s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 2188s Selecting previously unselected package liblapack3:arm64. 2188s Preparing to unpack .../009-liblapack3_3.12.0-3_arm64.deb ... 2188s Unpacking liblapack3:arm64 (3.12.0-3) ... 2189s Selecting previously unselected package fontconfig. 2189s Preparing to unpack .../010-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 2189s Unpacking fontconfig (2.15.0-1ubuntu1) ... 2189s Selecting previously unselected package libgraphite2-3:arm64. 2189s Preparing to unpack .../011-libgraphite2-3_1.3.14-2_arm64.deb ... 2190s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 2190s Selecting previously unselected package libharfbuzz0b:arm64. 2190s Preparing to unpack .../012-libharfbuzz0b_8.3.0-2_arm64.deb ... 2190s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 2190s Selecting previously unselected package libthai-data. 2190s Preparing to unpack .../013-libthai-data_0.1.29-2_all.deb ... 2190s Unpacking libthai-data (0.1.29-2) ... 2190s Selecting previously unselected package libdatrie1:arm64. 2190s Preparing to unpack .../014-libdatrie1_0.2.13-3_arm64.deb ... 2190s Unpacking libdatrie1:arm64 (0.2.13-3) ... 2190s Selecting previously unselected package libthai0:arm64. 2190s Preparing to unpack .../015-libthai0_0.1.29-2_arm64.deb ... 2190s Unpacking libthai0:arm64 (0.1.29-2) ... 2190s Selecting previously unselected package libpango-1.0-0:arm64. 2190s Preparing to unpack .../016-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 2190s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2191s Selecting previously unselected package libpangoft2-1.0-0:arm64. 2191s Preparing to unpack .../017-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 2191s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2191s Selecting previously unselected package libpangocairo-1.0-0:arm64. 2191s Preparing to unpack .../018-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 2191s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2191s Selecting previously unselected package libtcl8.6:arm64. 2192s Preparing to unpack .../019-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 2192s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 2192s Selecting previously unselected package libdeflate0:arm64. 2192s Preparing to unpack .../020-libdeflate0_1.19-1_arm64.deb ... 2192s Unpacking libdeflate0:arm64 (1.19-1) ... 2192s Selecting previously unselected package libjbig0:arm64. 2192s Preparing to unpack .../021-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 2192s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 2192s Selecting previously unselected package liblerc4:arm64. 2192s Preparing to unpack .../022-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 2192s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2193s Selecting previously unselected package libsharpyuv0:arm64. 2193s Preparing to unpack .../023-libsharpyuv0_1.3.2-0.4_arm64.deb ... 2193s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 2193s Selecting previously unselected package libwebp7:arm64. 2193s Preparing to unpack .../024-libwebp7_1.3.2-0.4_arm64.deb ... 2193s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 2193s Selecting previously unselected package libtiff6:arm64. 2193s Preparing to unpack .../025-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 2193s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2193s Selecting previously unselected package libxft2:arm64. 2193s Preparing to unpack .../026-libxft2_2.3.6-1_arm64.deb ... 2193s Unpacking libxft2:arm64 (2.3.6-1) ... 2193s Selecting previously unselected package x11-common. 2193s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu2_all.deb ... 2193s Unpacking x11-common (1:7.7+23ubuntu2) ... 2194s Selecting previously unselected package libxss1:arm64. 2194s Preparing to unpack .../028-libxss1_1%3a1.2.3-1build2_arm64.deb ... 2194s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 2194s Selecting previously unselected package libtk8.6:arm64. 2194s Preparing to unpack .../029-libtk8.6_8.6.13-2_arm64.deb ... 2194s Unpacking libtk8.6:arm64 (8.6.13-2) ... 2195s Selecting previously unselected package libice6:arm64. 2195s Preparing to unpack .../030-libice6_2%3a1.0.10-1build2_arm64.deb ... 2195s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 2195s Selecting previously unselected package libsm6:arm64. 2195s Preparing to unpack .../031-libsm6_2%3a1.2.3-1build2_arm64.deb ... 2195s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 2195s Selecting previously unselected package libxt6:arm64. 2195s Preparing to unpack .../032-libxt6_1%3a1.2.1-1.1_arm64.deb ... 2195s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 2196s Selecting previously unselected package r-base-core. 2196s Preparing to unpack .../033-r-base-core_4.3.2-1build1_arm64.deb ... 2196s Unpacking r-base-core (4.3.2-1build1) ... 2199s Selecting previously unselected package r-cran-mass. 2199s Preparing to unpack .../034-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 2199s Unpacking r-cran-mass (7.3-60.0.1-1) ... 2200s Selecting previously unselected package r-cran-class. 2200s Preparing to unpack .../035-r-cran-class_7.3-22-2_arm64.deb ... 2200s Unpacking r-cran-class (7.3-22-2) ... 2200s Selecting previously unselected package r-cran-proxy. 2200s Preparing to unpack .../036-r-cran-proxy_0.4-27-1_arm64.deb ... 2200s Unpacking r-cran-proxy (0.4-27-1) ... 2201s Selecting previously unselected package r-cran-e1071. 2201s Preparing to unpack .../037-r-cran-e1071_1.7-14-1_arm64.deb ... 2201s Unpacking r-cran-e1071 (1.7-14-1) ... 2201s Selecting previously unselected package r-cran-kernsmooth. 2201s Preparing to unpack .../038-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 2201s Unpacking r-cran-kernsmooth (2.23-22-1) ... 2201s Selecting previously unselected package r-cran-classint. 2201s Preparing to unpack .../039-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 2201s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 2201s Selecting previously unselected package r-cran-dbi. 2201s Preparing to unpack .../040-r-cran-dbi_1.2.2-1_all.deb ... 2201s Unpacking r-cran-dbi (1.2.2-1) ... 2202s Selecting previously unselected package r-cran-magrittr. 2202s Preparing to unpack .../041-r-cran-magrittr_2.0.3-1_arm64.deb ... 2202s Unpacking r-cran-magrittr (2.0.3-1) ... 2202s Selecting previously unselected package r-cran-littler. 2202s Preparing to unpack .../042-r-cran-littler_0.3.19-1_arm64.deb ... 2202s Unpacking r-cran-littler (0.3.19-1) ... 2202s Selecting previously unselected package littler. 2202s Preparing to unpack .../043-littler_0.3.19-1_all.deb ... 2202s Unpacking littler (0.3.19-1) ... 2203s Selecting previously unselected package r-cran-pkgkitten. 2203s Preparing to unpack .../044-r-cran-pkgkitten_0.2.3-1_all.deb ... 2203s Unpacking r-cran-pkgkitten (0.2.3-1) ... 2203s Selecting previously unselected package r-cran-rcpp. 2203s Preparing to unpack .../045-r-cran-rcpp_1.0.12-1_arm64.deb ... 2203s Unpacking r-cran-rcpp (1.0.12-1) ... 2204s Selecting previously unselected package r-cran-wk. 2204s Preparing to unpack .../046-r-cran-wk_0.9.1-1_arm64.deb ... 2204s Unpacking r-cran-wk (0.9.1-1) ... 2205s Selecting previously unselected package r-cran-s2. 2205s Preparing to unpack .../047-r-cran-s2_1.1.6-1_arm64.deb ... 2205s Unpacking r-cran-s2 (1.1.6-1) ... 2206s Selecting previously unselected package libudunits2-data. 2206s Preparing to unpack .../048-libudunits2-data_2.2.28-7_all.deb ... 2206s Unpacking libudunits2-data (2.2.28-7) ... 2206s Selecting previously unselected package libudunits2-0. 2206s Preparing to unpack .../049-libudunits2-0_2.2.28-7_arm64.deb ... 2206s Unpacking libudunits2-0 (2.2.28-7) ... 2207s Selecting previously unselected package r-cran-units. 2207s Preparing to unpack .../050-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 2207s Unpacking r-cran-units (0.8-5+dfsg-1) ... 2207s Selecting previously unselected package gdal-data. 2207s Preparing to unpack .../051-gdal-data_3.8.4+dfsg-3build1_all.deb ... 2207s Unpacking gdal-data (3.8.4+dfsg-3build1) ... 2208s Selecting previously unselected package gdal-plugins:arm64. 2208s Preparing to unpack .../052-gdal-plugins_3.8.4+dfsg-3build1_arm64.deb ... 2208s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-3build1) ... 2208s Selecting previously unselected package libaec0:arm64. 2208s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 2208s Unpacking libaec0:arm64 (1.1.2-1) ... 2209s Selecting previously unselected package libarpack2:arm64. 2209s Preparing to unpack .../054-libarpack2_3.9.1-1_arm64.deb ... 2209s Unpacking libarpack2:arm64 (3.9.1-1) ... 2209s Selecting previously unselected package libsuperlu6:arm64. 2209s Preparing to unpack .../055-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 2209s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 2210s Selecting previously unselected package libarmadillo12. 2210s Preparing to unpack .../056-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 2210s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 2210s Selecting previously unselected package libsnappy1v5:arm64. 2210s Preparing to unpack .../057-libsnappy1v5_1.1.10-1_arm64.deb ... 2210s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 2210s Selecting previously unselected package libblosc1:arm64. 2210s Preparing to unpack .../058-libblosc1_1.21.5+ds-1_arm64.deb ... 2210s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 2211s Selecting previously unselected package libcfitsio10t64:arm64. 2211s Preparing to unpack .../059-libcfitsio10t64_4.3.1-1.1_arm64.deb ... 2211s Unpacking libcfitsio10t64:arm64 (4.3.1-1.1) ... 2211s Selecting previously unselected package libminizip1t64:arm64. 2211s Preparing to unpack .../060-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 2211s Unpacking libminizip1t64:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 2211s Selecting previously unselected package libfreexl1:arm64. 2211s Preparing to unpack .../061-libfreexl1_2.0.0-1_arm64.deb ... 2211s Unpacking libfreexl1:arm64 (2.0.0-1) ... 2211s Selecting previously unselected package libfyba0:arm64. 2212s Preparing to unpack .../062-libfyba0_4.1.1-8_arm64.deb ... 2212s Unpacking libfyba0:arm64 (4.1.1-8) ... 2212s Selecting previously unselected package libgeos3.12.1t64:arm64. 2212s Preparing to unpack .../063-libgeos3.12.1t64_3.12.1-3_arm64.deb ... 2212s Unpacking libgeos3.12.1t64:arm64 (3.12.1-3) ... 2212s Selecting previously unselected package libgeos-c1t64:arm64. 2212s Preparing to unpack .../064-libgeos-c1t64_3.12.1-3_arm64.deb ... 2212s Unpacking libgeos-c1t64:arm64 (3.12.1-3) ... 2212s Selecting previously unselected package proj-data. 2212s Preparing to unpack .../065-proj-data_9.4.0-1_all.deb ... 2212s Unpacking proj-data (9.4.0-1) ... 2215s Selecting previously unselected package libproj25:arm64. 2215s Preparing to unpack .../066-libproj25_9.4.0-1_arm64.deb ... 2215s Unpacking libproj25:arm64 (9.4.0-1) ... 2215s Selecting previously unselected package libgeotiff5:arm64. 2215s Preparing to unpack .../067-libgeotiff5_1.7.1-5_arm64.deb ... 2215s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 2215s Selecting previously unselected package libgif7:arm64. 2215s Preparing to unpack .../068-libgif7_5.2.1-2.5_arm64.deb ... 2215s Unpacking libgif7:arm64 (5.2.1-2.5) ... 2216s Selecting previously unselected package libhdf4-0-alt. 2216s Preparing to unpack .../069-libhdf4-0-alt_4.2.16-3_arm64.deb ... 2216s Unpacking libhdf4-0-alt (4.2.16-3) ... 2216s Selecting previously unselected package libsz2:arm64. 2216s Preparing to unpack .../070-libsz2_1.1.2-1_arm64.deb ... 2216s Unpacking libsz2:arm64 (1.1.2-1) ... 2216s Selecting previously unselected package libhdf5-103-1:arm64. 2216s Preparing to unpack .../071-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 2216s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 2217s Selecting previously unselected package libdav1d7:arm64. 2217s Preparing to unpack .../072-libdav1d7_1.4.0-1_arm64.deb ... 2217s Unpacking libdav1d7:arm64 (1.4.0-1) ... 2217s Selecting previously unselected package libheif-plugin-dav1d:arm64. 2217s Preparing to unpack .../073-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 2217s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 2217s Selecting previously unselected package libde265-0:arm64. 2217s Preparing to unpack .../074-libde265-0_1.0.15-1_arm64.deb ... 2217s Unpacking libde265-0:arm64 (1.0.15-1) ... 2218s Selecting previously unselected package libheif-plugin-libde265:arm64. 2218s Preparing to unpack .../075-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 2218s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 2218s Selecting previously unselected package libheif1:arm64. 2218s Preparing to unpack .../076-libheif1_1.17.6-1ubuntu1_arm64.deb ... 2218s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 2218s Selecting previously unselected package liburiparser1:arm64. 2219s Preparing to unpack .../077-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 2219s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 2219s Selecting previously unselected package libkmlbase1t64:arm64. 2219s Preparing to unpack .../078-libkmlbase1t64_1.3.0-12_arm64.deb ... 2219s Unpacking libkmlbase1t64:arm64 (1.3.0-12) ... 2219s Selecting previously unselected package libkmldom1t64:arm64. 2219s Preparing to unpack .../079-libkmldom1t64_1.3.0-12_arm64.deb ... 2219s Unpacking libkmldom1t64:arm64 (1.3.0-12) ... 2219s Selecting previously unselected package libkmlengine1t64:arm64. 2220s Preparing to unpack .../080-libkmlengine1t64_1.3.0-12_arm64.deb ... 2220s Unpacking libkmlengine1t64:arm64 (1.3.0-12) ... 2220s Selecting previously unselected package mysql-common. 2220s Preparing to unpack .../081-mysql-common_5.8+1.1.0_all.deb ... 2220s Unpacking mysql-common (5.8+1.1.0) ... 2220s Selecting previously unselected package libmysqlclient21:arm64. 2220s Preparing to unpack .../082-libmysqlclient21_8.0.36-1_arm64.deb ... 2220s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 2221s Selecting previously unselected package libhdf5-hl-100:arm64. 2221s Preparing to unpack .../083-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 2221s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 2221s Selecting previously unselected package libnetcdf19t64:arm64. 2221s Preparing to unpack .../084-libnetcdf19t64_1%3a4.9.2-5ubuntu1_arm64.deb ... 2221s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu1) ... 2221s Selecting previously unselected package libltdl7:arm64. 2221s Preparing to unpack .../085-libltdl7_2.4.7-7_arm64.deb ... 2221s Unpacking libltdl7:arm64 (2.4.7-7) ... 2222s Selecting previously unselected package libodbc2:arm64. 2222s Preparing to unpack .../086-libodbc2_2.3.12-1_arm64.deb ... 2222s Unpacking libodbc2:arm64 (2.3.12-1) ... 2222s Selecting previously unselected package unixodbc-common. 2222s Preparing to unpack .../087-unixodbc-common_2.3.12-1_all.deb ... 2222s Unpacking unixodbc-common (2.3.12-1) ... 2222s Selecting previously unselected package libodbcinst2:arm64. 2222s Preparing to unpack .../088-libodbcinst2_2.3.12-1_arm64.deb ... 2222s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 2222s Selecting previously unselected package libogdi4.1. 2222s Preparing to unpack .../089-libogdi4.1_4.1.1+ds-1_arm64.deb ... 2222s Unpacking libogdi4.1 (4.1.1+ds-1) ... 2223s Selecting previously unselected package libopenjp2-7:arm64. 2223s Preparing to unpack .../090-libopenjp2-7_2.5.0-2_arm64.deb ... 2223s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 2223s Selecting previously unselected package liblcms2-2:arm64. 2223s Preparing to unpack .../091-liblcms2-2_2.14-2_arm64.deb ... 2223s Unpacking liblcms2-2:arm64 (2.14-2) ... 2224s Selecting previously unselected package libpoppler134:arm64. 2224s Preparing to unpack .../092-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 2224s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 2224s Selecting previously unselected package libpq5:arm64. 2224s Preparing to unpack .../093-libpq5_16.2-1_arm64.deb ... 2224s Unpacking libpq5:arm64 (16.2-1) ... 2224s Selecting previously unselected package libqhull-r8.0:arm64. 2224s Preparing to unpack .../094-libqhull-r8.0_2020.2-6_arm64.deb ... 2224s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 2224s Selecting previously unselected package librttopo1:arm64. 2224s Preparing to unpack .../095-librttopo1_1.1.0-3_arm64.deb ... 2224s Unpacking librttopo1:arm64 (1.1.0-3) ... 2225s Selecting previously unselected package libspatialite8t64:arm64. 2225s Preparing to unpack .../096-libspatialite8t64_5.1.0-3_arm64.deb ... 2225s Unpacking libspatialite8t64:arm64 (5.1.0-3) ... 2225s Selecting previously unselected package libxerces-c3.2t64:arm64. 2225s Preparing to unpack .../097-libxerces-c3.2t64_3.2.4+debian-1.2_arm64.deb ... 2225s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.2) ... 2225s Selecting previously unselected package libgdal34t64:arm64. 2225s Preparing to unpack .../098-libgdal34t64_3.8.4+dfsg-3build1_arm64.deb ... 2225s Unpacking libgdal34t64:arm64 (3.8.4+dfsg-3build1) ... 2228s Selecting previously unselected package r-cran-sf. 2228s Preparing to unpack .../099-r-cran-sf_1.0-15+dfsg-1build1_arm64.deb ... 2228s Unpacking r-cran-sf (1.0-15+dfsg-1build1) ... 2230s Selecting previously unselected package r-cran-rlang. 2230s Preparing to unpack .../100-r-cran-rlang_1.1.3-1_arm64.deb ... 2230s Unpacking r-cran-rlang (1.1.3-1) ... 2230s Selecting previously unselected package r-cran-cli. 2230s Preparing to unpack .../101-r-cran-cli_3.6.2-1_arm64.deb ... 2230s Unpacking r-cran-cli (3.6.2-1) ... 2231s Selecting previously unselected package r-cran-glue. 2231s Preparing to unpack .../102-r-cran-glue_1.7.0-1_arm64.deb ... 2231s Unpacking r-cran-glue (1.7.0-1) ... 2231s Selecting previously unselected package r-cran-lifecycle. 2232s Preparing to unpack .../103-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 2232s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 2232s Selecting previously unselected package r-cran-vctrs. 2232s Preparing to unpack .../104-r-cran-vctrs_0.6.5-1_arm64.deb ... 2232s Unpacking r-cran-vctrs (0.6.5-1) ... 2234s Selecting previously unselected package r-cran-blob. 2237s Preparing to unpack .../105-r-cran-blob_1.2.4-1_all.deb ... 2237s Unpacking r-cran-blob (1.2.4-1) ... 2237s Selecting previously unselected package r-cran-digest. 2237s Preparing to unpack .../106-r-cran-digest_0.6.34-1_arm64.deb ... 2237s Unpacking r-cran-digest (0.6.34-1) ... 2240s Selecting previously unselected package r-cran-jsonlite. 2240s Preparing to unpack .../107-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 2240s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 2240s Selecting previously unselected package r-cran-lazyeval. 2240s Preparing to unpack .../108-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 2240s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 2242s Selecting previously unselected package r-cran-rex. 2242s Preparing to unpack .../109-r-cran-rex_1.2.1-1_all.deb ... 2242s Unpacking r-cran-rex (1.2.1-1) ... 2242s Selecting previously unselected package r-cran-curl. 2242s Preparing to unpack .../110-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 2242s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 2242s Selecting previously unselected package r-cran-mime. 2242s Preparing to unpack .../111-r-cran-mime_0.12-1_arm64.deb ... 2242s Unpacking r-cran-mime (0.12-1) ... 2242s Selecting previously unselected package r-cran-sys. 2242s Preparing to unpack .../112-r-cran-sys_3.4.2-1_arm64.deb ... 2242s Unpacking r-cran-sys (3.4.2-1) ... 2243s Selecting previously unselected package r-cran-askpass. 2243s Preparing to unpack .../113-r-cran-askpass_1.2.0-1_arm64.deb ... 2243s Unpacking r-cran-askpass (1.2.0-1) ... 2243s Selecting previously unselected package r-cran-openssl. 2243s Preparing to unpack .../114-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 2243s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 2243s Selecting previously unselected package r-cran-r6. 2243s Preparing to unpack .../115-r-cran-r6_2.5.1-1_all.deb ... 2243s Unpacking r-cran-r6 (2.5.1-1) ... 2243s Selecting previously unselected package r-cran-httr. 2244s Preparing to unpack .../116-r-cran-httr_1.4.7+dfsg-1_all.deb ... 2244s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 2244s Selecting previously unselected package r-cran-crayon. 2244s Preparing to unpack .../117-r-cran-crayon_1.5.2-1_all.deb ... 2244s Unpacking r-cran-crayon (1.5.2-1) ... 2244s Selecting previously unselected package r-cran-withr. 2244s Preparing to unpack .../118-r-cran-withr_2.5.0-1_all.deb ... 2244s Unpacking r-cran-withr (2.5.0-1) ... 2244s Selecting previously unselected package r-cran-yaml. 2244s Preparing to unpack .../119-r-cran-yaml_2.3.8-1_arm64.deb ... 2244s Unpacking r-cran-yaml (2.3.8-1) ... 2245s Selecting previously unselected package fonts-glyphicons-halflings. 2245s Preparing to unpack .../120-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 2245s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 2245s Selecting previously unselected package libjs-bootstrap. 2245s Preparing to unpack .../121-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 2245s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 2245s Selecting previously unselected package node-html5shiv. 2245s Preparing to unpack .../122-node-html5shiv_3.7.3+dfsg-5_all.deb ... 2245s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 2245s Selecting previously unselected package r-cran-covr. 2245s Preparing to unpack .../123-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 2245s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 2246s Selecting previously unselected package r-cran-generics. 2246s Preparing to unpack .../124-r-cran-generics_0.1.3-1_all.deb ... 2246s Unpacking r-cran-generics (0.1.3-1) ... 2247s Selecting previously unselected package r-cran-fansi. 2247s Preparing to unpack .../125-r-cran-fansi_1.0.5-1_arm64.deb ... 2247s Unpacking r-cran-fansi (1.0.5-1) ... 2247s Selecting previously unselected package r-cran-utf8. 2247s Preparing to unpack .../126-r-cran-utf8_1.2.4-1_arm64.deb ... 2247s Unpacking r-cran-utf8 (1.2.4-1) ... 2248s Selecting previously unselected package r-cran-pillar. 2248s Preparing to unpack .../127-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 2248s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 2248s Selecting previously unselected package r-cran-pkgconfig. 2248s Preparing to unpack .../128-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 2248s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 2249s Selecting previously unselected package r-cran-tibble. 2249s Preparing to unpack .../129-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 2249s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 2249s Selecting previously unselected package r-cran-tidyselect. 2249s Preparing to unpack .../130-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 2249s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 2250s Selecting previously unselected package r-cran-dplyr. 2250s Preparing to unpack .../131-r-cran-dplyr_1.1.4-1_arm64.deb ... 2250s Unpacking r-cran-dplyr (1.1.4-1) ... 2251s Selecting previously unselected package r-cran-gtable. 2251s Preparing to unpack .../132-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 2251s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 2251s Selecting previously unselected package r-cran-isoband. 2251s Preparing to unpack .../133-r-cran-isoband_0.2.7-1_arm64.deb ... 2251s Unpacking r-cran-isoband (0.2.7-1) ... 2251s Selecting previously unselected package r-cran-lattice. 2252s Preparing to unpack .../134-r-cran-lattice_0.22-5-1_arm64.deb ... 2252s Unpacking r-cran-lattice (0.22-5-1) ... 2252s Selecting previously unselected package r-cran-nlme. 2252s Preparing to unpack .../135-r-cran-nlme_3.1.164-1_arm64.deb ... 2252s Unpacking r-cran-nlme (3.1.164-1) ... 2252s Selecting previously unselected package r-cran-matrix. 2253s Preparing to unpack .../136-r-cran-matrix_1.6-5-1_arm64.deb ... 2253s Unpacking r-cran-matrix (1.6-5-1) ... 2254s Selecting previously unselected package r-cran-mgcv. 2254s Preparing to unpack .../137-r-cran-mgcv_1.9-1-1_arm64.deb ... 2254s Unpacking r-cran-mgcv (1.9-1-1) ... 2254s Selecting previously unselected package r-cran-farver. 2254s Preparing to unpack .../138-r-cran-farver_2.1.1-1_arm64.deb ... 2254s Unpacking r-cran-farver (2.1.1-1) ... 2255s Selecting previously unselected package r-cran-labeling. 2255s Preparing to unpack .../139-r-cran-labeling_0.4.3-1_all.deb ... 2255s Unpacking r-cran-labeling (0.4.3-1) ... 2255s Selecting previously unselected package r-cran-colorspace. 2255s Preparing to unpack .../140-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 2255s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 2256s Selecting previously unselected package r-cran-munsell. 2256s Preparing to unpack .../141-r-cran-munsell_0.5.0-2build1_all.deb ... 2256s Unpacking r-cran-munsell (0.5.0-2build1) ... 2257s Selecting previously unselected package r-cran-rcolorbrewer. 2257s Preparing to unpack .../142-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 2257s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 2257s Selecting previously unselected package r-cran-viridislite. 2257s Preparing to unpack .../143-r-cran-viridislite_0.4.2-2_all.deb ... 2257s Unpacking r-cran-viridislite (0.4.2-2) ... 2257s Selecting previously unselected package r-cran-scales. 2257s Preparing to unpack .../144-r-cran-scales_1.3.0-1_all.deb ... 2257s Unpacking r-cran-scales (1.3.0-1) ... 2258s Selecting previously unselected package r-cran-ggplot2. 2258s Preparing to unpack .../145-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 2258s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 2260s Selecting previously unselected package r-cran-evaluate. 2260s Preparing to unpack .../146-r-cran-evaluate_0.23-1_all.deb ... 2260s Unpacking r-cran-evaluate (0.23-1) ... 2260s Selecting previously unselected package r-cran-xfun. 2260s Preparing to unpack .../147-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 2260s Unpacking r-cran-xfun (0.41+dfsg-1) ... 2260s Selecting previously unselected package libjs-highlight.js. 2260s Preparing to unpack .../148-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 2260s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 2261s Selecting previously unselected package libjs-jquery. 2261s Preparing to unpack .../149-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 2261s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 2261s Selecting previously unselected package r-cran-highr. 2261s Preparing to unpack .../150-r-cran-highr_0.10+dfsg-1_all.deb ... 2261s Unpacking r-cran-highr (0.10+dfsg-1) ... 2261s Selecting previously unselected package fonts-mathjax. 2261s Preparing to unpack .../151-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 2261s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 2264s Selecting previously unselected package libjs-mathjax. 2264s Preparing to unpack .../152-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 2264s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 2277s Selecting previously unselected package libjs-jquery-datatables. 2277s Preparing to unpack .../153-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 2277s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 2278s Selecting previously unselected package node-normalize.css. 2278s Preparing to unpack .../154-node-normalize.css_8.0.1-5_all.deb ... 2278s Unpacking node-normalize.css (8.0.1-5) ... 2278s Selecting previously unselected package r-cran-knitr. 2278s Preparing to unpack .../155-r-cran-knitr_1.45+dfsg-1_all.deb ... 2278s Unpacking r-cran-knitr (1.45+dfsg-1) ... 2278s Selecting previously unselected package r-cran-lwgeom. 2279s Preparing to unpack .../156-r-cran-lwgeom_0.2-13-3_arm64.deb ... 2279s Unpacking r-cran-lwgeom (0.2-13-3) ... 2279s Selecting previously unselected package r-cran-maps. 2279s Preparing to unpack .../157-r-cran-maps_3.4.2-1_arm64.deb ... 2279s Unpacking r-cran-maps (3.4.2-1) ... 2279s Selecting previously unselected package r-cran-pbapply. 2279s Preparing to unpack .../158-r-cran-pbapply_1.7-2-1_all.deb ... 2279s Unpacking r-cran-pbapply (1.7-2-1) ... 2280s Selecting previously unselected package r-cran-sp. 2280s Preparing to unpack .../159-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 2280s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 2280s Selecting previously unselected package r-cran-terra. 2280s Preparing to unpack .../160-r-cran-terra_1.7-65-1_arm64.deb ... 2280s Unpacking r-cran-terra (1.7-65-1) ... 2281s Selecting previously unselected package r-cran-raster. 2281s Preparing to unpack .../161-r-cran-raster_3.6-26-1_arm64.deb ... 2281s Unpacking r-cran-raster (3.6-26-1) ... 2281s Selecting previously unselected package r-cran-base64enc. 2281s Preparing to unpack .../162-r-cran-base64enc_0.1-3-3_arm64.deb ... 2281s Unpacking r-cran-base64enc (0.1-3-3) ... 2281s Selecting previously unselected package r-cran-fastmap. 2281s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 2281s Unpacking r-cran-fastmap (1.1.1-1) ... 2282s Selecting previously unselected package r-cran-cachem. 2282s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 2282s Unpacking r-cran-cachem (1.0.8-1) ... 2282s Selecting previously unselected package r-cran-ellipsis. 2282s Preparing to unpack .../165-r-cran-ellipsis_0.3.2-2_arm64.deb ... 2282s Unpacking r-cran-ellipsis (0.3.2-2) ... 2282s Selecting previously unselected package r-cran-htmltools. 2282s Preparing to unpack .../166-r-cran-htmltools_0.5.7-1_arm64.deb ... 2282s Unpacking r-cran-htmltools (0.5.7-1) ... 2283s Selecting previously unselected package r-cran-jquerylib. 2283s Preparing to unpack .../167-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 2283s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 2283s Selecting previously unselected package r-cran-memoise. 2283s Preparing to unpack .../168-r-cran-memoise_2.0.1-1_all.deb ... 2283s Unpacking r-cran-memoise (2.0.1-1) ... 2284s Selecting previously unselected package r-cran-fs. 2284s Preparing to unpack .../169-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 2284s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 2284s Selecting previously unselected package r-cran-rappdirs. 2285s Preparing to unpack .../170-r-cran-rappdirs_0.3.3-1_arm64.deb ... 2285s Unpacking r-cran-rappdirs (0.3.3-1) ... 2285s Selecting previously unselected package r-cran-sass. 2285s Preparing to unpack .../171-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 2285s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 2286s Selecting previously unselected package node-bootstrap-sass. 2286s Preparing to unpack .../172-node-bootstrap-sass_3.4.3-2_all.deb ... 2286s Unpacking node-bootstrap-sass (3.4.3-2) ... 2287s Selecting previously unselected package javascript-common. 2288s Preparing to unpack .../173-javascript-common_11+nmu1_all.deb ... 2288s Unpacking javascript-common (11+nmu1) ... 2288s Selecting previously unselected package libjs-popper.js. 2288s Preparing to unpack .../174-libjs-popper.js_1.16.1+ds-6_all.deb ... 2288s Unpacking libjs-popper.js (1.16.1+ds-6) ... 2288s Selecting previously unselected package libjs-bootstrap4. 2289s Preparing to unpack .../175-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 2289s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 2290s Selecting previously unselected package r-cran-bslib. 2290s Preparing to unpack .../176-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 2290s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 2291s Selecting previously unselected package r-cran-fontawesome. 2292s Preparing to unpack .../177-r-cran-fontawesome_0.5.2-1_all.deb ... 2292s Unpacking r-cran-fontawesome (0.5.2-1) ... 2292s Selecting previously unselected package r-cran-stringi. 2292s Preparing to unpack .../178-r-cran-stringi_1.8.3-1_arm64.deb ... 2292s Unpacking r-cran-stringi (1.8.3-1) ... 2292s Selecting previously unselected package r-cran-stringr. 2292s Preparing to unpack .../179-r-cran-stringr_1.5.1-1_all.deb ... 2292s Unpacking r-cran-stringr (1.5.1-1) ... 2293s Selecting previously unselected package r-cran-tinytex. 2293s Preparing to unpack .../180-r-cran-tinytex_0.49-1_all.deb ... 2293s Unpacking r-cran-tinytex (0.49-1) ... 2293s Selecting previously unselected package libjs-jquery-ui. 2293s Preparing to unpack .../181-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 2293s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 2294s Selecting previously unselected package libjs-modernizr. 2294s Preparing to unpack .../182-libjs-modernizr_2.6.2+ds1-5_all.deb ... 2294s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 2295s Selecting previously unselected package libjs-prettify. 2295s Preparing to unpack .../183-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 2295s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 2295s Selecting previously unselected package fonts-font-awesome. 2295s Preparing to unpack .../184-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 2295s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 2296s Selecting previously unselected package pandoc-data. 2296s Preparing to unpack .../185-pandoc-data_3.1.3-1_all.deb ... 2296s Unpacking pandoc-data (3.1.3-1) ... 2296s Selecting previously unselected package liblua5.4-0:arm64. 2297s Preparing to unpack .../186-liblua5.4-0_5.4.6-3_arm64.deb ... 2297s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 2297s Selecting previously unselected package pandoc. 2297s Preparing to unpack .../187-pandoc_3.1.3+ds-2_arm64.deb ... 2297s Unpacking pandoc (3.1.3+ds-2) ... 2306s Selecting previously unselected package r-cran-later. 2306s Preparing to unpack .../188-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 2306s Unpacking r-cran-later (1.3.2+dfsg-1) ... 2306s Selecting previously unselected package r-cran-promises. 2306s Preparing to unpack .../189-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 2306s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 2307s Selecting previously unselected package r-cran-httpuv. 2307s Preparing to unpack .../190-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 2307s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 2307s Selecting previously unselected package r-cran-xtable. 2307s Preparing to unpack .../191-r-cran-xtable_1%3a1.8-4-2_all.deb ... 2307s Unpacking r-cran-xtable (1:1.8-4-2) ... 2307s Selecting previously unselected package r-cran-sourcetools. 2307s Preparing to unpack .../192-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 2307s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 2308s Selecting previously unselected package r-cran-commonmark. 2308s Preparing to unpack .../193-r-cran-commonmark_1.9.1-1_arm64.deb ... 2308s Unpacking r-cran-commonmark (1.9.1-1) ... 2308s Selecting previously unselected package libjs-json. 2308s Preparing to unpack .../194-libjs-json_0~20221030+~1.0.8-1_all.deb ... 2308s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 2308s Selecting previously unselected package libjs-es5-shim. 2308s Preparing to unpack .../195-libjs-es5-shim_4.6.7-2_all.deb ... 2308s Unpacking libjs-es5-shim (4.6.7-2) ... 2308s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 2308s Preparing to unpack .../196-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 2308s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 2308s Selecting previously unselected package libjs-sifter.js. 2308s Preparing to unpack .../197-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 2308s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 2308s Selecting previously unselected package libjs-microplugin.js. 2309s Preparing to unpack .../198-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 2309s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 2309s Selecting previously unselected package libjs-jquery-selectize.js. 2309s Preparing to unpack .../199-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 2309s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 2309s Selecting previously unselected package libjs-d3. 2309s Preparing to unpack .../200-libjs-d3_3.5.17-4_all.deb ... 2309s Unpacking libjs-d3 (3.5.17-4) ... 2309s Selecting previously unselected package r-cran-shiny. 2309s Preparing to unpack .../201-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 2309s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 2310s Selecting previously unselected package r-cran-rmarkdown. 2310s Preparing to unpack .../202-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 2310s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 2310s Selecting previously unselected package r-cran-rpostgresql. 2310s Preparing to unpack .../203-r-cran-rpostgresql_0.7-6+dfsg-1_arm64.deb ... 2310s Unpacking r-cran-rpostgresql (0.7-6+dfsg-1) ... 2310s Selecting previously unselected package r-cran-bit. 2310s Preparing to unpack .../204-r-cran-bit_4.0.5-1_arm64.deb ... 2310s Unpacking r-cran-bit (4.0.5-1) ... 2311s Selecting previously unselected package r-cran-bit64. 2311s Preparing to unpack .../205-r-cran-bit64_4.0.5-1_arm64.deb ... 2311s Unpacking r-cran-bit64 (4.0.5-1) ... 2311s Selecting previously unselected package r-cran-plogr. 2311s Preparing to unpack .../206-r-cran-plogr_0.2.0-3build1_all.deb ... 2311s Unpacking r-cran-plogr (0.2.0-3build1) ... 2311s Selecting previously unselected package r-cran-cpp11. 2311s Preparing to unpack .../207-r-cran-cpp11_0.4.7-1_all.deb ... 2311s Unpacking r-cran-cpp11 (0.4.7-1) ... 2312s Selecting previously unselected package r-cran-rsqlite. 2312s Preparing to unpack .../208-r-cran-rsqlite_2.3.4-1_arm64.deb ... 2312s Unpacking r-cran-rsqlite (2.3.4-1) ... 2312s Selecting previously unselected package r-cran-spatstat.utils. 2312s Preparing to unpack .../209-r-cran-spatstat.utils_3.0-4-1_arm64.deb ... 2312s Unpacking r-cran-spatstat.utils (3.0-4-1) ... 2312s Selecting previously unselected package r-cran-spatstat.data. 2312s Preparing to unpack .../210-r-cran-spatstat.data_3.0-4-1_all.deb ... 2312s Unpacking r-cran-spatstat.data (3.0-4-1) ... 2313s Selecting previously unselected package r-cran-deldir. 2313s Preparing to unpack .../211-r-cran-deldir_2.0-4-1_arm64.deb ... 2313s Unpacking r-cran-deldir (2.0-4-1) ... 2313s Selecting previously unselected package r-cran-polyclip. 2313s Preparing to unpack .../212-r-cran-polyclip_1.10-6-1_arm64.deb ... 2313s Unpacking r-cran-polyclip (1.10-6-1) ... 2313s Selecting previously unselected package r-cran-spatstat.geom. 2313s Preparing to unpack .../213-r-cran-spatstat.geom_3.2-8-1_arm64.deb ... 2313s Unpacking r-cran-spatstat.geom (3.2-8-1) ... 2314s Selecting previously unselected package r-cran-spatstat.random. 2314s Preparing to unpack .../214-r-cran-spatstat.random_3.2-2-1_arm64.deb ... 2314s Unpacking r-cran-spatstat.random (3.2-2-1) ... 2314s Selecting previously unselected package r-cran-abind. 2314s Preparing to unpack .../215-r-cran-abind_1.4-5-2_all.deb ... 2314s Unpacking r-cran-abind (1.4-5-2) ... 2314s Selecting previously unselected package r-cran-tensor. 2314s Preparing to unpack .../216-r-cran-tensor_1.5-4_all.deb ... 2314s Unpacking r-cran-tensor (1.5-4) ... 2314s Selecting previously unselected package r-cran-spatstat.sparse. 2314s Preparing to unpack .../217-r-cran-spatstat.sparse_3.0-3-1_arm64.deb ... 2314s Unpacking r-cran-spatstat.sparse (3.0-3-1) ... 2314s Selecting previously unselected package r-cran-goftest. 2314s Preparing to unpack .../218-r-cran-goftest_1.2-3-1_arm64.deb ... 2314s Unpacking r-cran-goftest (1.2-3-1) ... 2314s Selecting previously unselected package r-cran-spatstat.explore. 2315s Preparing to unpack .../219-r-cran-spatstat.explore_3.2-5-1_arm64.deb ... 2315s Unpacking r-cran-spatstat.explore (3.2-5-1) ... 2315s Selecting previously unselected package r-cran-survival. 2315s Preparing to unpack .../220-r-cran-survival_3.5-8-1_arm64.deb ... 2315s Unpacking r-cran-survival (3.5-8-1) ... 2316s Selecting previously unselected package r-cran-rpart. 2316s Preparing to unpack .../221-r-cran-rpart_4.1.23-1_arm64.deb ... 2316s Unpacking r-cran-rpart (4.1.23-1) ... 2316s Selecting previously unselected package r-cran-spatstat.model. 2316s Preparing to unpack .../222-r-cran-spatstat.model_3.2-8-1_arm64.deb ... 2316s Unpacking r-cran-spatstat.model (3.2-8-1) ... 2316s Selecting previously unselected package r-cran-spatstat.linnet. 2317s Preparing to unpack .../223-r-cran-spatstat.linnet_3.1-3-1_arm64.deb ... 2317s Unpacking r-cran-spatstat.linnet (3.1-3-1) ... 2317s Selecting previously unselected package r-cran-spatstat. 2317s Preparing to unpack .../224-r-cran-spatstat_3.0-7-1_arm64.deb ... 2317s Unpacking r-cran-spatstat (3.0-7-1) ... 2318s Selecting previously unselected package r-cran-stars. 2318s Preparing to unpack .../225-r-cran-stars_0.6-4-1_all.deb ... 2318s Unpacking r-cran-stars (0.6-4-1) ... 2318s Selecting previously unselected package r-cran-brio. 2318s Preparing to unpack .../226-r-cran-brio_1.1.4-1_arm64.deb ... 2318s Unpacking r-cran-brio (1.1.4-1) ... 2318s Selecting previously unselected package r-cran-ps. 2319s Preparing to unpack .../227-r-cran-ps_1.7.6-1_arm64.deb ... 2319s Unpacking r-cran-ps (1.7.6-1) ... 2319s Selecting previously unselected package r-cran-processx. 2319s Preparing to unpack .../228-r-cran-processx_3.8.3-1_arm64.deb ... 2319s Unpacking r-cran-processx (3.8.3-1) ... 2319s Selecting previously unselected package r-cran-callr. 2319s Preparing to unpack .../229-r-cran-callr_3.7.3-2_all.deb ... 2319s Unpacking r-cran-callr (3.7.3-2) ... 2320s Selecting previously unselected package r-cran-desc. 2320s Preparing to unpack .../230-r-cran-desc_1.4.3-1_all.deb ... 2320s Unpacking r-cran-desc (1.4.3-1) ... 2320s Selecting previously unselected package r-cran-pkgbuild. 2320s Preparing to unpack .../231-r-cran-pkgbuild_1.4.3-1_all.deb ... 2320s Unpacking r-cran-pkgbuild (1.4.3-1) ... 2320s Selecting previously unselected package r-cran-rprojroot. 2321s Preparing to unpack .../232-r-cran-rprojroot_2.0.4-1_all.deb ... 2321s Unpacking r-cran-rprojroot (2.0.4-1) ... 2321s Selecting previously unselected package r-cran-pkgload. 2321s Preparing to unpack .../233-r-cran-pkgload_1.3.4-1_all.deb ... 2321s Unpacking r-cran-pkgload (1.3.4-1) ... 2321s Selecting previously unselected package r-cran-praise. 2321s Preparing to unpack .../234-r-cran-praise_1.0.0-4build1_all.deb ... 2321s Unpacking r-cran-praise (1.0.0-4build1) ... 2322s Selecting previously unselected package r-cran-diffobj. 2322s Preparing to unpack .../235-r-cran-diffobj_0.3.5-1_arm64.deb ... 2322s Unpacking r-cran-diffobj (0.3.5-1) ... 2323s Selecting previously unselected package r-cran-rematch2. 2323s Preparing to unpack .../236-r-cran-rematch2_2.1.2-2build1_all.deb ... 2323s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 2323s Selecting previously unselected package r-cran-waldo. 2323s Preparing to unpack .../237-r-cran-waldo_0.5.2-1build1_all.deb ... 2323s Unpacking r-cran-waldo (0.5.2-1build1) ... 2323s Selecting previously unselected package r-cran-testthat. 2324s Preparing to unpack .../238-r-cran-testthat_3.2.1-1_arm64.deb ... 2324s Unpacking r-cran-testthat (3.2.1-1) ... 2324s Selecting previously unselected package r-cran-purrr. 2324s Preparing to unpack .../239-r-cran-purrr_1.0.2-1_arm64.deb ... 2324s Unpacking r-cran-purrr (1.0.2-1) ... 2324s Selecting previously unselected package r-cran-tidyr. 2324s Preparing to unpack .../240-r-cran-tidyr_1.3.1-1_arm64.deb ... 2324s Unpacking r-cran-tidyr (1.3.1-1) ... 2325s Selecting previously unselected package dctrl-tools. 2325s Preparing to unpack .../241-dctrl-tools_2.24-3build2_arm64.deb ... 2325s Unpacking dctrl-tools (2.24-3build2) ... 2326s Selecting previously unselected package libc-dev-bin. 2326s Preparing to unpack .../242-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 2326s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 2326s Selecting previously unselected package linux-libc-dev:arm64. 2326s Preparing to unpack .../243-linux-libc-dev_6.8.0-11.11_arm64.deb ... 2326s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 2328s Selecting previously unselected package libcrypt-dev:arm64. 2328s Preparing to unpack .../244-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 2329s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 2329s Selecting previously unselected package libtirpc-dev:arm64. 2329s Preparing to unpack .../245-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 2329s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 2329s Selecting previously unselected package libnsl-dev:arm64. 2329s Preparing to unpack .../246-libnsl-dev_1.3.0-3_arm64.deb ... 2329s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 2329s Selecting previously unselected package rpcsvc-proto. 2329s Preparing to unpack .../247-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 2329s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 2330s Selecting previously unselected package libc6-dev:arm64. 2330s Preparing to unpack .../248-libc6-dev_2.39-0ubuntu2_arm64.deb ... 2330s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 2332s Selecting previously unselected package libisl23:arm64. 2332s Preparing to unpack .../249-libisl23_0.26-3_arm64.deb ... 2332s Unpacking libisl23:arm64 (0.26-3) ... 2332s Selecting previously unselected package libmpc3:arm64. 2332s Preparing to unpack .../250-libmpc3_1.3.1-1_arm64.deb ... 2332s Unpacking libmpc3:arm64 (1.3.1-1) ... 2333s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 2333s Preparing to unpack .../251-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 2333s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2335s Selecting previously unselected package cpp-13. 2336s Preparing to unpack .../252-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 2336s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 2336s Selecting previously unselected package cpp-aarch64-linux-gnu. 2336s Preparing to unpack .../253-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 2336s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 2336s Selecting previously unselected package cpp. 2336s Preparing to unpack .../254-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 2337s Unpacking cpp (4:13.2.0-7ubuntu1) ... 2337s Selecting previously unselected package libcc1-0:arm64. 2337s Preparing to unpack .../255-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 2337s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 2337s Selecting previously unselected package libitm1:arm64. 2337s Preparing to unpack .../256-libitm1_14-20240303-1ubuntu1_arm64.deb ... 2337s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 2338s Selecting previously unselected package libatomic1:arm64. 2338s Preparing to unpack .../257-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 2338s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 2338s Selecting previously unselected package libasan8:arm64. 2338s Preparing to unpack .../258-libasan8_14-20240303-1ubuntu1_arm64.deb ... 2338s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 2338s Selecting previously unselected package liblsan0:arm64. 2339s Preparing to unpack .../259-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 2339s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 2339s Selecting previously unselected package libtsan2:arm64. 2340s Preparing to unpack .../260-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 2340s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 2341s Selecting previously unselected package libubsan1:arm64. 2341s Preparing to unpack .../261-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 2341s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 2341s Selecting previously unselected package libhwasan0:arm64. 2341s Preparing to unpack .../262-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 2342s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 2342s Selecting previously unselected package libgcc-13-dev:arm64. 2342s Preparing to unpack .../263-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 2342s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 2342s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 2342s Preparing to unpack .../264-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 2342s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2346s Selecting previously unselected package gcc-13. 2346s Preparing to unpack .../265-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 2346s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 2346s Selecting previously unselected package gcc-aarch64-linux-gnu. 2346s Preparing to unpack .../266-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 2346s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 2346s Selecting previously unselected package gcc. 2347s Preparing to unpack .../267-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 2347s Unpacking gcc (4:13.2.0-7ubuntu1) ... 2347s Selecting previously unselected package libstdc++-13-dev:arm64. 2347s Preparing to unpack .../268-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 2347s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 2348s Selecting previously unselected package g++-13-aarch64-linux-gnu. 2349s Preparing to unpack .../269-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 2349s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2351s Selecting previously unselected package g++-13. 2351s Preparing to unpack .../270-g++-13_13.2.0-17ubuntu2_arm64.deb ... 2351s Unpacking g++-13 (13.2.0-17ubuntu2) ... 2351s Selecting previously unselected package g++-aarch64-linux-gnu. 2351s Preparing to unpack .../271-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 2351s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 2351s Selecting previously unselected package g++. 2351s Preparing to unpack .../272-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 2351s Unpacking g++ (4:13.2.0-7ubuntu1) ... 2352s Selecting previously unselected package build-essential. 2352s Preparing to unpack .../273-build-essential_12.10ubuntu1_arm64.deb ... 2352s Unpacking build-essential (12.10ubuntu1) ... 2352s Selecting previously unselected package libgfortran-13-dev:arm64. 2352s Preparing to unpack .../274-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 2352s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 2352s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 2352s Preparing to unpack .../275-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 2352s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2354s Selecting previously unselected package gfortran-13. 2354s Preparing to unpack .../276-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 2354s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 2354s Selecting previously unselected package gfortran-aarch64-linux-gnu. 2354s Preparing to unpack .../277-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 2354s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 2354s Selecting previously unselected package gfortran. 2355s Preparing to unpack .../278-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 2355s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 2355s Selecting previously unselected package libblas-dev:arm64. 2355s Preparing to unpack .../279-libblas-dev_3.12.0-3_arm64.deb ... 2355s Unpacking libblas-dev:arm64 (3.12.0-3) ... 2355s Selecting previously unselected package liblapack-dev:arm64. 2355s Preparing to unpack .../280-liblapack-dev_3.12.0-3_arm64.deb ... 2355s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 2358s Selecting previously unselected package libncurses-dev:arm64. 2358s Preparing to unpack .../281-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 2358s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 2359s Selecting previously unselected package libreadline-dev:arm64. 2359s Preparing to unpack .../282-libreadline-dev_8.2-3_arm64.deb ... 2359s Unpacking libreadline-dev:arm64 (8.2-3) ... 2359s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 2359s Preparing to unpack .../283-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 2359s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 2359s Selecting previously unselected package libjpeg8-dev:arm64. 2359s Preparing to unpack .../284-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 2359s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 2359s Selecting previously unselected package libjpeg-dev:arm64. 2359s Preparing to unpack .../285-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 2359s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 2359s Selecting previously unselected package libpcre2-16-0:arm64. 2360s Preparing to unpack .../286-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 2360s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 2360s Selecting previously unselected package libpcre2-32-0:arm64. 2360s Preparing to unpack .../287-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 2360s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 2360s Selecting previously unselected package libpcre2-posix3:arm64. 2360s Preparing to unpack .../288-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 2360s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 2360s Selecting previously unselected package libpcre2-dev:arm64. 2360s Preparing to unpack .../289-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 2360s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 2361s Selecting previously unselected package zlib1g-dev:arm64. 2361s Preparing to unpack .../290-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 2361s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 2361s Selecting previously unselected package libpng-dev:arm64. 2361s Preparing to unpack .../291-libpng-dev_1.6.43-3_arm64.deb ... 2361s Unpacking libpng-dev:arm64 (1.6.43-3) ... 2362s Selecting previously unselected package libbz2-dev:arm64. 2362s Preparing to unpack .../292-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 2362s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 2362s Selecting previously unselected package liblzma-dev:arm64. 2362s Preparing to unpack .../293-liblzma-dev_5.4.5-0.3_arm64.deb ... 2362s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 2363s Selecting previously unselected package icu-devtools. 2363s Preparing to unpack .../294-icu-devtools_74.2-1ubuntu1_arm64.deb ... 2363s Unpacking icu-devtools (74.2-1ubuntu1) ... 2363s Selecting previously unselected package libicu-dev:arm64. 2363s Preparing to unpack .../295-libicu-dev_74.2-1ubuntu1_arm64.deb ... 2363s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 2366s Selecting previously unselected package libpkgconf3:arm64. 2366s Preparing to unpack .../296-libpkgconf3_1.8.1-2_arm64.deb ... 2366s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 2366s Selecting previously unselected package pkgconf-bin. 2366s Preparing to unpack .../297-pkgconf-bin_1.8.1-2_arm64.deb ... 2366s Unpacking pkgconf-bin (1.8.1-2) ... 2367s Selecting previously unselected package pkgconf:arm64. 2367s Preparing to unpack .../298-pkgconf_1.8.1-2_arm64.deb ... 2367s Unpacking pkgconf:arm64 (1.8.1-2) ... 2367s Selecting previously unselected package pkg-config:arm64. 2367s Preparing to unpack .../299-pkg-config_1.8.1-2_arm64.deb ... 2367s Unpacking pkg-config:arm64 (1.8.1-2) ... 2368s Selecting previously unselected package r-base-dev. 2368s Preparing to unpack .../300-r-base-dev_4.3.2-1build1_all.deb ... 2368s Unpacking r-base-dev (4.3.2-1build1) ... 2368s Selecting previously unselected package pkg-r-autopkgtest. 2368s Preparing to unpack .../301-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 2368s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 2368s Setting up libjs-json (0~20221030+~1.0.8-1) ... 2368s Setting up javascript-common (11+nmu1) ... 2368s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 2368s Setting up liblcms2-2:arm64 (2.14-2) ... 2368s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 2368s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 2368s Setting up libpaper1:arm64 (1.1.29) ... 2370s 2370s Creating config file /etc/papersize with new version 2371s Setting up mysql-common (5.8+1.1.0) ... 2371s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 2371s Setting up libmysqlclient21:arm64 (8.0.36-1) ... 2371s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 2371s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 2371s Setting up proj-data (9.4.0-1) ... 2371s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 2371s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 2371s Setting up libdatrie1:arm64 (0.2.13-3) ... 2372s Setting up libjs-popper.js (1.16.1+ds-6) ... 2372s Setting up libogdi4.1 (4.1.1+ds-1) ... 2372s Setting up libxcb-render0:arm64 (1.15-1) ... 2372s Setting up libgeos3.12.1t64:arm64 (3.12.1-3) ... 2372s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 2372s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 2372s Setting up libgeos-c1t64:arm64 (3.12.1-3) ... 2372s Setting up unzip (6.0-28ubuntu3) ... 2372s Setting up x11-common (1:7.7+23ubuntu2) ... 2375s Setting up node-html5shiv (3.7.3+dfsg-5) ... 2375s Setting up libpq5:arm64 (16.2-1) ... 2375s Setting up libdeflate0:arm64 (1.19-1) ... 2375s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 2375s Setting up libqhull-r8.0:arm64 (2020.2-6) ... 2375s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 2375s Setting up libxcb-shm0:arm64 (1.15-1) ... 2375s Setting up libpaper-utils (1.1.29) ... 2375s Setting up libxerces-c3.2t64:arm64 (3.2.4+debian-1.2) ... 2375s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 2375s Setting up libjs-modernizr (2.6.2+ds1-5) ... 2375s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 2375s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 2375s Setting up libaec0:arm64 (1.1.2-1) ... 2375s Setting up gdal-data (3.8.4+dfsg-3build1) ... 2376s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 2376s Setting up libjs-es5-shim (4.6.7-2) ... 2376s Setting up zip (3.0-13) ... 2376s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 2376s Setting up libblas3:arm64 (3.12.0-3) ... 2376s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 2376s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 2376s Setting up libpkgconf3:arm64 (1.8.1-2) ... 2376s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 2376s Setting up libcfitsio10t64:arm64 (4.3.1-1.1) ... 2376s Setting up libjs-d3 (3.5.17-4) ... 2376s Setting up fonts-dejavu-mono (2.37-8) ... 2376s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 2376s Setting up libmpc3:arm64 (1.3.1-1) ... 2376s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 2376s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 2376s Setting up icu-devtools (74.2-1ubuntu1) ... 2376s Setting up fonts-dejavu-core (2.37-8) ... 2376s Setting up unixodbc-common (2.3.12-1) ... 2376s Setting up pkgconf-bin (1.8.1-2) ... 2376s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 2376s Setting up libltdl7:arm64 (2.4.7-7) ... 2376s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 2376s Setting up libwebp7:arm64 (1.3.2-0.4) ... 2376s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 2376s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 2376s Setting up libgif7:arm64 (5.2.1-2.5) ... 2376s Setting up libodbc2:arm64 (2.3.12-1) ... 2376s Setting up liburiparser1:arm64 (0.9.7+dfsg-2) ... 2376s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 2376s Setting up librttopo1:arm64 (1.1.0-3) ... 2376s Setting up libudunits2-data (2.2.28-7) ... 2376s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 2376s Setting up libdav1d7:arm64 (1.4.0-1) ... 2376s Setting up libnsl-dev:arm64 (1.3.0-3) ... 2376s Setting up libminizip1t64:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 2376s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 2376s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 2377s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 2377s Setting up libfyba0:arm64 (4.1.1-8) ... 2377s Setting up libblosc1:arm64 (1.21.5+ds-1) ... 2377s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 2377s Setting up libopenjp2-7:arm64 (2.5.0-2) ... 2377s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 2377s Setting up libthai-data (0.1.29-2) ... 2377s Setting up node-bootstrap-sass (3.4.3-2) ... 2377s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 2377s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 2377s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 2377s Setting up pandoc-data (3.1.3-1) ... 2377s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 2377s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 2377s Setting up libisl23:arm64 (0.26-3) ... 2377s Setting up libde265-0:arm64 (1.0.15-1) ... 2377s Setting up libc-dev-bin (2.39-0ubuntu2) ... 2377s Setting up libkmlbase1t64:arm64 (1.3.0-12) ... 2377s Setting up node-normalize.css (8.0.1-5) ... 2377s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 2377s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 2377s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 2377s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 2377s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 2377s Setting up libblas-dev:arm64 (3.12.0-3) ... 2377s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 2377s Setting up libsz2:arm64 (1.1.2-1) ... 2377s Setting up dctrl-tools (2.24-3build2) ... 2377s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 2377s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 2377s Setting up gdal-plugins:arm64 (3.8.4+dfsg-3build1) ... 2377s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 2377s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 2377s Setting up libice6:arm64 (2:1.0.10-1build2) ... 2377s Setting up libodbcinst2:arm64 (2.3.12-1) ... 2377s Setting up liblapack3:arm64 (3.12.0-3) ... 2377s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 2377s Setting up libudunits2-0 (2.2.28-7) ... 2377s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2377s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 2379s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 2379s Setting up libarpack2:arm64 (3.9.1-1) ... 2379s Setting up libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 2379s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 2379s Setting up pkgconf:arm64 (1.8.1-2) ... 2379s Setting up libkmldom1t64:arm64 (1.3.0-12) ... 2379s Setting up libthai0:arm64 (0.1.29-2) ... 2379s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 2379s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 2379s Setting up pandoc (3.1.3+ds-2) ... 2379s Setting up liblapack-dev:arm64 (3.12.0-3) ... 2379s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 2379s Setting up pkg-config:arm64 (1.8.1-2) ... 2379s Setting up libhdf4-0-alt (4.2.16-3) ... 2379s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 2379s Setting up libfreexl1:arm64 (2.0.0-1) ... 2379s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 2379s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 2379s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 2379s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 2379s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 2379s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 2379s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 2379s Setting up libarmadillo12 (1:12.6.7+dfsg-1) ... 2379s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 2379s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 2379s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 2379s Setting up fontconfig (2.15.0-1ubuntu1) ... 2382s Regenerating fonts cache... done. 2382s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 2382s Setting up libnetcdf19t64:arm64 (1:4.9.2-5ubuntu1) ... 2382s Setting up libxft2:arm64 (2.3.6-1) ... 2382s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 2382s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 2382s Setting up cpp-13 (13.2.0-17ubuntu2) ... 2382s Setting up libproj25:arm64 (9.4.0-1) ... 2382s Setting up libpoppler134:arm64 (24.02.0-1ubuntu2) ... 2382s Setting up libtk8.6:arm64 (8.6.13-2) ... 2382s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 2382s Setting up libkmlengine1t64:arm64 (1.3.0-12) ... 2382s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2382s Setting up libreadline-dev:arm64 (8.2-3) ... 2382s Setting up libcairo2:arm64 (1.18.0-1) ... 2382s Setting up libgeotiff5:arm64 (1.7.1-5) ... 2382s Setting up gcc-13 (13.2.0-17ubuntu2) ... 2382s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 2382s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 2382s Setting up cpp (4:13.2.0-7ubuntu1) ... 2382s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 2382s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 2382s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 2382s Setting up libspatialite8t64:arm64 (5.1.0-3) ... 2382s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2382s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 2382s Setting up g++-13 (13.2.0-17ubuntu2) ... 2382s Setting up libpng-dev:arm64 (1.6.43-3) ... 2382s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 2382s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 2382s Setting up gcc (4:13.2.0-7ubuntu1) ... 2382s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 2382s Setting up r-base-core (4.3.2-1build1) ... 2384s 2384s Creating config file /etc/R/Renviron with new version 2385s Setting up r-cran-crayon (1.5.2-1) ... 2385s Setting up r-cran-labeling (0.4.3-1) ... 2385s Setting up r-cran-sourcetools (0.1.7-1-1) ... 2385s Setting up r-cran-lattice (0.22-5-1) ... 2385s Setting up r-cran-ps (1.7.6-1) ... 2385s Setting up r-cran-nlme (3.1.164-1) ... 2385s Setting up r-cran-farver (2.1.1-1) ... 2385s Setting up r-cran-pbapply (1.7-2-1) ... 2385s Setting up r-cran-spatstat.utils (3.0-4-1) ... 2385s Setting up 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2386s Setting up r-cran-rpostgresql (0.7-6+dfsg-1) ... 2386s Setting up r-cran-cachem (1.0.8-1) ... 2386s Setting up build-essential (12.10ubuntu1) ... 2386s Setting up r-cran-vctrs (0.6.5-1) ... 2386s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 2386s Setting up r-cran-ellipsis (0.3.2-2) ... 2386s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 2386s Setting up r-base-dev (4.3.2-1build1) ... 2386s Setting up r-cran-stringr (1.5.1-1) ... 2386s Setting up r-cran-class (7.3-22-2) ... 2386s Setting up r-cran-callr (3.7.3-2) ... 2386s Setting up r-cran-desc (1.4.3-1) ... 2386s Setting up r-cran-munsell (0.5.0-2build1) ... 2386s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 2386s Setting up r-cran-survival (3.5-8-1) ... 2386s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 2386s Setting up r-cran-httr (1.4.7+dfsg-1) ... 2386s Setting up r-cran-scales (1.3.0-1) ... 2386s Setting up r-cran-memoise (2.0.1-1) ... 2386s Setting up r-cran-covr (3.6.4+dfsg-1) ... 2386s Setting up r-cran-promises (1.2.1+dfsg-1) ... 2386s Setting up r-cran-purrr (1.0.2-1) ... 2386s Setting up r-cran-e1071 (1.7-14-1) ... 2386s Setting up r-cran-spatstat.data (3.0-4-1) ... 2386s Setting up r-cran-blob (1.2.4-1) ... 2386s Setting up r-cran-htmltools (0.5.7-1) ... 2386s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 2386s Setting up r-cran-spatstat.geom (3.2-8-1) ... 2386s Setting up r-cran-pkgbuild (1.4.3-1) ... 2386s Setting up r-cran-sass (0.4.8+dfsg-1) ... 2386s Setting up r-cran-dplyr (1.1.4-1) ... 2386s Setting up r-cran-rsqlite (2.3.4-1) ... 2386s Setting up r-cran-pkgload (1.3.4-1) ... 2386s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 2386s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 2386s Setting up r-cran-rematch2 (2.1.2-2build1) ... 2386s Setting up r-cran-rpart (4.1.23-1) ... 2386s Setting up r-cran-fontawesome (0.5.2-1) ... 2386s Setting up r-cran-spatstat.random (3.2-2-1) ... 2386s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 2386s Setting up r-cran-classint (0.4-10+dfsg-1) ... 2386s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 2386s Setting up r-cran-spatstat.explore (3.2-5-1) ... 2386s Setting up r-cran-waldo (0.5.2-1build1) ... 2386s Setting up r-cran-tidyr (1.3.1-1) ... 2386s Setting up r-cran-spatstat.model (3.2-8-1) ... 2386s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 2386s Setting up r-cran-testthat (3.2.1-1) ... 2386s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 2386s Setting up r-cran-spatstat.linnet (3.1-3-1) ... 2386s Setting up r-cran-spatstat (3.0-7-1) ... 2386s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 2386s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 2386s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 2386s Setting up libgdal34t64:arm64 (3.8.4+dfsg-3build1) ... 2386s Setting up r-cran-terra (1.7-65-1) ... 2386s Setting up r-cran-sf (1.0-15+dfsg-1build1) ... 2386s Setting up r-cran-stars (0.6-4-1) ... 2386s Setting up r-cran-raster (3.6-26-1) ... 2386s Setting up r-cran-lwgeom (0.2-13-3) ... 2386s Setting up autopkgtest-satdep (0) ... 2386s Processing triggers for libc-bin (2.39-0ubuntu2) ... 2387s Processing triggers for man-db (2.12.0-3) ... 2395s Processing triggers for install-info (7.1-3) ... 2466s (Reading database ... 100296 files and directories currently installed.) 2466s Removing autopkgtest-satdep (0) ... 2475s autopkgtest [04:24:00]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 2475s autopkgtest [04:24:00]: test pkg-r-autopkgtest: [----------------------- 2475s Test: Try to load the R library sf 2476s 2476s R version 4.3.2 (2023-10-31) -- "Eye Holes" 2476s Copyright (C) 2023 The R Foundation for Statistical Computing 2476s Platform: aarch64-unknown-linux-gnu (64-bit) 2476s 2476s R is free software and comes with ABSOLUTELY NO WARRANTY. 2476s You are welcome to redistribute it under certain conditions. 2476s Type 'license()' or 'licence()' for distribution details. 2476s 2476s R is a collaborative project with many contributors. 2476s Type 'contributors()' for more information and 2476s 'citation()' on how to cite R or R packages in publications. 2476s 2476s Type 'demo()' for some demos, 'help()' for on-line help, or 2476s 'help.start()' for an HTML browser interface to help. 2476s Type 'q()' to quit R. 2476s 2477s > library('sf') 2484s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE 2484s Warning message: 2484s package ‘sf’ was built under R version 4.3.3 2484s > 2484s > 2484s Other tests are currently unsupported! 2484s They will be progressively added. 2484s autopkgtest [04:24:09]: test pkg-r-autopkgtest: -----------------------] 2485s autopkgtest [04:24:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 2485s pkg-r-autopkgtest PASS 2486s autopkgtest [04:24:11]: @@@@@@@@@@@@@@@@@@@@ summary 2486s run-unit-test PASS 2486s pkg-r-autopkgtest PASS 2524s Creating nova instance adt-noble-arm64-r-cran-sf-20240313-021617-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240310.img (UUID c166432c-3f89-460f-aeaa-f7e9d80d14b5)... 2524s Creating nova instance adt-noble-arm64-r-cran-sf-20240313-021617-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240310.img (UUID c166432c-3f89-460f-aeaa-f7e9d80d14b5)...