0s autopkgtest [19:27:38]: starting date and time: 2024-03-16 19:27:38+0000 0s autopkgtest [19:27:38]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [19:27:38]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kfxpcf2e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-phangorn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-23.secgroup --name adt-noble-arm64-r-cran-phangorn-20240316-192738-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [19:28:43]: testbed dpkg architecture: arm64 65s autopkgtest [19:28:43]: testbed apt version: 2.7.12 65s autopkgtest [19:28:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 66s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 66s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 66s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3657 kB] 66s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 66s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 66s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 66s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 66s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 66s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4013 kB] 66s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 66s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 66s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 68s Fetched 9065 kB in 2s (5507 kB/s) 68s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 72s The following packages will be REMOVED: 72s libglib2.0-0 libssl3 72s The following NEW packages will be installed: 72s libglib2.0-0t64 libssl3t64 xdg-user-dirs 72s The following packages have been kept back: 72s curl 72s The following packages will be upgraded: 72s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 72s ubuntu-minimal ubuntu-standard 72s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 72s Need to get 4613 kB of archives. 72s After this operation, 211 kB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 72s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 72s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 72s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 73s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 73s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 73s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 73s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 73s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 73s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 73s Fetched 4613 kB in 1s (6823 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 73s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 73s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 73s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 73s udisks2 depends on libglib2.0-0 (>= 2.77.0). 73s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 73s python3-gi depends on libglib2.0-0 (>= 2.77.0). 73s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 73s netplan.io depends on libglib2.0-0 (>= 2.70.0). 73s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 73s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 73s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 73s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 73s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 73s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 73s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 73s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 73s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 73s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 73s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 73s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 73s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 73s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 73s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 73s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 73s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 73s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 73s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 73s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 73s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 73s fwupd depends on libglib2.0-0 (>= 2.79.0). 73s bolt depends on libglib2.0-0 (>= 2.56.0). 73s 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 73s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 73s Selecting previously unselected package libglib2.0-0t64:arm64. 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 73s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 74s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 74s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 74s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 74s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 74s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 74s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 74s wget depends on libssl3 (>= 3.0.0). 74s u-boot-tools depends on libssl3 (>= 3.0.0). 74s tnftp depends on libssl3 (>= 3.0.0). 74s tcpdump depends on libssl3 (>= 3.0.0). 74s systemd-resolved depends on libssl3 (>= 3.0.0). 74s systemd depends on libssl3 (>= 3.0.0). 74s sudo depends on libssl3 (>= 3.0.0). 74s sbsigntool depends on libssl3 (>= 3.0.0). 74s rsync depends on libssl3 (>= 3.0.0). 74s python3-cryptography depends on libssl3 (>= 3.0.0). 74s openssh-server depends on libssl3 (>= 3.0.10). 74s openssh-client depends on libssl3 (>= 3.0.10). 74s mtd-utils depends on libssl3 (>= 3.0.0). 74s mokutil depends on libssl3 (>= 3.0.0). 74s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 74s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 74s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 74s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 74s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 74s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 74s libnvme1 depends on libssl3 (>= 3.0.0). 74s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 74s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 74s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 74s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 74s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 74s kmod depends on libssl3 (>= 3.0.0). 74s dhcpcd-base depends on libssl3 (>= 3.0.0). 74s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 74s 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 74s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 74s Selecting previously unselected package libssl3t64:arm64. 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 74s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 74s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 74s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 74s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 74s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 74s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 74s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 74s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 74s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 74s Unpacking ubuntu-minimal (1.536) over (1.535) ... 74s Selecting previously unselected package xdg-user-dirs. 74s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 74s Unpacking xdg-user-dirs (0.18-1) ... 74s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 74s Unpacking ubuntu-standard (1.536) over (1.535) ... 74s Setting up ubuntu-minimal (1.536) ... 74s Setting up xdg-user-dirs (0.18-1) ... 74s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 74s Setting up libtirpc-common (1.3.4+ds-1.1) ... 74s Setting up ubuntu-standard (1.536) ... 74s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 74s No schema files found: doing nothing. 74s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 74s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 74s Setting up openssl (3.0.13-0ubuntu1) ... 74s Setting up readline-common (8.2-3.1) ... 74s Processing triggers for man-db (2.12.0-3) ... 75s Processing triggers for install-info (7.1-3) ... 75s Processing triggers for libc-bin (2.39-0ubuntu2) ... 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 77s sh: Attempting to set up Debian/Ubuntu apt sources automatically 77s sh: Distribution appears to be Ubuntu 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s eatmydata is already the newest version (131-1). 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s dbus is already the newest version (1.14.10-4ubuntu1). 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s rng-tools-debian is already the newest version (2.4). 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s The following packages will be REMOVED: 81s cloud-init* python3-configobj* python3-debconf* 82s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 82s After this operation, 3252 kB disk space will be freed. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 82s Removing cloud-init (24.1.1-0ubuntu1) ... 82s Removing python3-configobj (5.0.8-3) ... 82s Removing python3-debconf (1.5.86) ... 82s Processing triggers for man-db (2.12.0-3) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 83s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 83s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 83s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 83s invoke-rc.d: policy-rc.d denied execution of try-restart. 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s linux-generic is already the newest version (6.8.0-11.11+1). 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 85s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s autopkgtest [19:29:07]: rebooting testbed after setup commands that affected boot 115s autopkgtest [19:29:33]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 118s autopkgtest [19:29:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-phangorn 121s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-phangorn 2.11.1+dfsg-1 (dsc) [2330 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-phangorn 2.11.1+dfsg-1 (tar) [918 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-phangorn 2.11.1+dfsg-1 (diff) [4308 B] 122s gpgv: Signature made Fri Jan 27 08:33:35 2023 UTC 122s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 122s gpgv: issuer "tille@debian.org" 122s gpgv: Can't check signature: No public key 122s dpkg-source: warning: cannot verify inline signature for ./r-cran-phangorn_2.11.1+dfsg-1.dsc: no acceptable signature found 122s autopkgtest [19:29:40]: testing package r-cran-phangorn version 2.11.1+dfsg-1 122s autopkgtest [19:29:40]: build not needed 123s autopkgtest [19:29:41]: test run-unit-test: preparing testbed 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 127s The following additional packages will be installed: 127s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 127s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 127s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 127s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 127s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 127s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 127s libxft2 libxrender1 libxss1 libxt6 littler r-base-core r-cran-ape r-cran-cli 127s r-cran-cpp11 r-cran-digest r-cran-fastmatch r-cran-generics r-cran-glue 127s r-cran-igraph r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 127s r-cran-matrix r-cran-nlme r-cran-phangorn r-cran-pkgconfig r-cran-pkgkitten 127s r-cran-quadprog r-cran-rcpp r-cran-rlang r-cran-tinytest unzip x11-common 127s xdg-utils zip 127s Suggested packages: 127s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 127s r-cran-gee r-cran-expm clustalw muscle phyml t-coffee r-cran-covr 127s r-cran-tibble r-cran-withr r-cran-getopt r-cran-knitr r-cran-rmarkdown 127s r-bioc-biostrings r-cran-magick r-cran-rgl r-cran-seqinr r-bioc-seqlogo 127s r-cran-xtable r-cran-testthat r-cran-inline 127s Recommended packages: 127s r-recommended r-base-dev r-doc-html r-cran-callr r-cran-covr r-cran-crayon 127s r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery 127s r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 127s r-cran-rstudioapi r-cran-testthat r-cran-tibble r-cran-whoami r-cran-withr 127s r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 127s r-cran-lobstr r-cran-progress r-cran-scales r-cran-vctrs r-cran-pkgload 127s r-cran-dbi r-cran-dplyr r-cran-rsqlite r-cran-waldo r-bioc-graph r-cran-rgl 127s r-cran-vdiffr r-cran-lintr r-cran-tidyverse r-cran-fs r-cran-pillar 127s r-cran-usethis libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 127s x11-utils x11-xserver-utils 127s The following NEW packages will be installed: 127s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 127s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 127s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 127s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 127s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 127s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 127s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 127s littler r-base-core r-cran-ape r-cran-cli r-cran-cpp11 r-cran-digest 127s r-cran-fastmatch r-cran-generics r-cran-glue r-cran-igraph r-cran-lattice 127s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-nlme 127s r-cran-phangorn r-cran-pkgconfig r-cran-pkgkitten r-cran-quadprog 127s r-cran-rcpp r-cran-rlang r-cran-tinytest unzip x11-common xdg-utils zip 127s 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 59.7 MB/59.7 MB of archives. 127s After this operation, 119 MB of additional disk space will be used. 127s Get:1 /tmp/autopkgtest.SUpfVD/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 127s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 127s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 127s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 127s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 127s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 127s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 127s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 127s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 128s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 128s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 128s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 128s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 128s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 128s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 128s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 128s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 128s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 128s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 128s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 128s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 128s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 128s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 128s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 128s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 128s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 128s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 128s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 128s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 128s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 128s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 128s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 128s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 128s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 128s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 128s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 128s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 128s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 128s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 128s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 128s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 128s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 128s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 128s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 128s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 129s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 129s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 129s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 129s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 129s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 129s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 129s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 129s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ape arm64 5.7-1-1 [2879 kB] 129s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 129s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 129s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmatch arm64 1.1-4-1 [34.6 kB] 129s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 129s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 129s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 129s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 129s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 129s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 129s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 129s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-igraph arm64 1.6.0-1 [4329 kB] 129s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-quadprog arm64 1.5-8-1build1 [29.8 kB] 129s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-phangorn arm64 2.11.1+dfsg-1 [1668 kB] 129s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytest all 1.4.1-1 [674 kB] 130s Preconfiguring packages ... 130s Fetched 59.7 MB in 2s (25.4 MB/s) 130s Selecting previously unselected package fonts-dejavu-mono. 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 130s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 130s Unpacking fonts-dejavu-mono (2.37-8) ... 130s Selecting previously unselected package fonts-dejavu-core. 130s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 130s Unpacking fonts-dejavu-core (2.37-8) ... 130s Selecting previously unselected package fontconfig-config. 130s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 131s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 131s Selecting previously unselected package libfontconfig1:arm64. 131s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 131s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 131s Selecting previously unselected package fontconfig. 131s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 131s Unpacking fontconfig (2.15.0-1ubuntu1) ... 131s Selecting previously unselected package libblas3:arm64. 131s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 131s Unpacking libblas3:arm64 (3.12.0-3) ... 131s Selecting previously unselected package libpixman-1-0:arm64. 131s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ... 131s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 131s Selecting previously unselected package libxcb-render0:arm64. 131s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ... 131s Unpacking libxcb-render0:arm64 (1.15-1) ... 131s Selecting previously unselected package libxcb-shm0:arm64. 131s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ... 131s Unpacking libxcb-shm0:arm64 (1.15-1) ... 131s Selecting previously unselected package libxrender1:arm64. 131s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 131s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 131s Selecting previously unselected package libcairo2:arm64. 131s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ... 131s Unpacking libcairo2:arm64 (1.18.0-1) ... 131s Selecting previously unselected package libdatrie1:arm64. 131s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ... 131s Unpacking libdatrie1:arm64 (0.2.13-3) ... 131s Selecting previously unselected package libdeflate0:arm64. 131s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ... 131s Unpacking libdeflate0:arm64 (1.19-1) ... 131s Selecting previously unselected package libgfortran5:arm64. 131s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 131s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 131s Selecting previously unselected package libgomp1:arm64. 131s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 131s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 131s Selecting previously unselected package libgraphite2-3:arm64. 131s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ... 131s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 131s Selecting previously unselected package libharfbuzz0b:arm64. 131s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ... 131s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 131s Selecting previously unselected package x11-common. 131s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ... 131s Unpacking x11-common (1:7.7+23ubuntu2) ... 131s Selecting previously unselected package libice6:arm64. 131s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ... 131s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 131s Selecting previously unselected package libjpeg-turbo8:arm64. 131s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 131s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 131s Selecting previously unselected package libjpeg8:arm64. 131s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 131s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 131s Selecting previously unselected package liblapack3:arm64. 131s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ... 131s Unpacking liblapack3:arm64 (3.12.0-3) ... 132s Selecting previously unselected package liblerc4:arm64. 132s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 132s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 132s Selecting previously unselected package libthai-data. 132s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ... 132s Unpacking libthai-data (0.1.29-2) ... 132s Selecting previously unselected package libthai0:arm64. 132s Preparing to unpack .../24-libthai0_0.1.29-2_arm64.deb ... 132s Unpacking libthai0:arm64 (0.1.29-2) ... 132s Selecting previously unselected package libpango-1.0-0:arm64. 132s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 132s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 132s Selecting previously unselected package libpangoft2-1.0-0:arm64. 132s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 132s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 132s Selecting previously unselected package libpangocairo-1.0-0:arm64. 132s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 132s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 132s Selecting previously unselected package libpaper1:arm64. 132s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ... 132s Unpacking libpaper1:arm64 (1.1.29) ... 132s Selecting previously unselected package libpaper-utils. 132s Preparing to unpack .../29-libpaper-utils_1.1.29_arm64.deb ... 132s Unpacking libpaper-utils (1.1.29) ... 132s Selecting previously unselected package libsharpyuv0:arm64. 132s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ... 132s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 132s Selecting previously unselected package libsm6:arm64. 132s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ... 132s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 132s Selecting previously unselected package libtcl8.6:arm64. 132s Preparing to unpack .../32-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 132s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 132s Selecting previously unselected package libjbig0:arm64. 132s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 132s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 132s Selecting previously unselected package libwebp7:arm64. 132s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ... 132s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 132s Selecting previously unselected package libtiff6:arm64. 132s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 132s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 132s Selecting previously unselected package libxft2:arm64. 132s Preparing to unpack .../36-libxft2_2.3.6-1_arm64.deb ... 132s Unpacking libxft2:arm64 (2.3.6-1) ... 132s Selecting previously unselected package libxss1:arm64. 132s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build2_arm64.deb ... 132s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 132s Selecting previously unselected package libtk8.6:arm64. 132s Preparing to unpack .../38-libtk8.6_8.6.13-2_arm64.deb ... 132s Unpacking libtk8.6:arm64 (8.6.13-2) ... 132s Selecting previously unselected package libxt6:arm64. 132s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ... 132s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 132s Selecting previously unselected package zip. 133s Preparing to unpack .../40-zip_3.0-13_arm64.deb ... 133s Unpacking zip (3.0-13) ... 133s Selecting previously unselected package unzip. 133s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ... 133s Unpacking unzip (6.0-28ubuntu3) ... 133s Selecting previously unselected package xdg-utils. 133s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 133s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 133s Selecting previously unselected package r-base-core. 133s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ... 133s Unpacking r-base-core (4.3.2-1build1) ... 133s Selecting previously unselected package r-cran-littler. 133s Preparing to unpack .../44-r-cran-littler_0.3.19-1_arm64.deb ... 133s Unpacking r-cran-littler (0.3.19-1) ... 133s Selecting previously unselected package littler. 133s Preparing to unpack .../45-littler_0.3.19-1_all.deb ... 133s Unpacking littler (0.3.19-1) ... 133s Selecting previously unselected package r-cran-lattice. 133s Preparing to unpack .../46-r-cran-lattice_0.22-5-1_arm64.deb ... 133s Unpacking r-cran-lattice (0.22-5-1) ... 133s Selecting previously unselected package r-cran-nlme. 133s Preparing to unpack .../47-r-cran-nlme_3.1.164-1_arm64.deb ... 133s Unpacking r-cran-nlme (3.1.164-1) ... 133s Selecting previously unselected package r-cran-pkgkitten. 133s Preparing to unpack .../48-r-cran-pkgkitten_0.2.3-1_all.deb ... 133s Unpacking r-cran-pkgkitten (0.2.3-1) ... 133s Selecting previously unselected package r-cran-rcpp. 133s Preparing to unpack .../49-r-cran-rcpp_1.0.12-1_arm64.deb ... 133s Unpacking r-cran-rcpp (1.0.12-1) ... 133s Selecting previously unselected package r-cran-digest. 133s Preparing to unpack .../50-r-cran-digest_0.6.34-1_arm64.deb ... 133s Unpacking r-cran-digest (0.6.34-1) ... 133s Selecting previously unselected package r-cran-ape. 133s Preparing to unpack .../51-r-cran-ape_5.7-1-1_arm64.deb ... 133s Unpacking r-cran-ape (5.7-1-1) ... 133s Selecting previously unselected package r-cran-cli. 133s Preparing to unpack .../52-r-cran-cli_3.6.2-1_arm64.deb ... 133s Unpacking r-cran-cli (3.6.2-1) ... 133s Selecting previously unselected package r-cran-cpp11. 134s Preparing to unpack .../53-r-cran-cpp11_0.4.7-1_all.deb ... 134s Unpacking r-cran-cpp11 (0.4.7-1) ... 134s Selecting previously unselected package r-cran-fastmatch. 134s Preparing to unpack .../54-r-cran-fastmatch_1.1-4-1_arm64.deb ... 134s Unpacking r-cran-fastmatch (1.1-4-1) ... 134s Selecting previously unselected package r-cran-generics. 134s Preparing to unpack .../55-r-cran-generics_0.1.3-1_all.deb ... 134s Unpacking r-cran-generics (0.1.3-1) ... 134s Selecting previously unselected package r-cran-glue. 134s Preparing to unpack .../56-r-cran-glue_1.7.0-1_arm64.deb ... 134s Unpacking r-cran-glue (1.7.0-1) ... 134s Selecting previously unselected package r-cran-rlang. 134s Preparing to unpack .../57-r-cran-rlang_1.1.3-1_arm64.deb ... 134s Unpacking r-cran-rlang (1.1.3-1) ... 134s Selecting previously unselected package r-cran-lifecycle. 134s Preparing to unpack .../58-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 134s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 134s Selecting previously unselected package r-cran-magrittr. 134s Preparing to unpack .../59-r-cran-magrittr_2.0.3-1_arm64.deb ... 134s Unpacking r-cran-magrittr (2.0.3-1) ... 134s Selecting previously unselected package r-cran-matrix. 134s Preparing to unpack .../60-r-cran-matrix_1.6-5-1_arm64.deb ... 134s Unpacking r-cran-matrix (1.6-5-1) ... 134s Selecting previously unselected package r-cran-pkgconfig. 134s Preparing to unpack .../61-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 134s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 134s Selecting previously unselected package r-cran-igraph. 134s Preparing to unpack .../62-r-cran-igraph_1.6.0-1_arm64.deb ... 134s Unpacking r-cran-igraph (1.6.0-1) ... 134s Selecting previously unselected package r-cran-quadprog. 134s Preparing to unpack .../63-r-cran-quadprog_1.5-8-1build1_arm64.deb ... 134s Unpacking r-cran-quadprog (1.5-8-1build1) ... 134s Selecting previously unselected package r-cran-phangorn. 134s Preparing to unpack .../64-r-cran-phangorn_2.11.1+dfsg-1_arm64.deb ... 134s Unpacking r-cran-phangorn (2.11.1+dfsg-1) ... 134s Selecting previously unselected package r-cran-tinytest. 134s Preparing to unpack .../65-r-cran-tinytest_1.4.1-1_all.deb ... 134s Unpacking r-cran-tinytest (1.4.1-1) ... 134s Selecting previously unselected package autopkgtest-satdep. 134s Preparing to unpack .../66-1-autopkgtest-satdep.deb ... 134s Unpacking autopkgtest-satdep (0) ... 134s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 134s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 134s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 134s Setting up libpaper1:arm64 (1.1.29) ... 135s 135s Creating config file /etc/papersize with new version 135s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 135s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 135s Setting up libdatrie1:arm64 (0.2.13-3) ... 135s Setting up libxcb-render0:arm64 (1.15-1) ... 135s Setting up unzip (6.0-28ubuntu3) ... 135s Setting up x11-common (1:7.7+23ubuntu2) ... 136s Setting up libdeflate0:arm64 (1.19-1) ... 136s Setting up libxcb-shm0:arm64 (1.15-1) ... 136s Setting up libpaper-utils (1.1.29) ... 136s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 136s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 136s Setting up zip (3.0-13) ... 136s Setting up libblas3:arm64 (3.12.0-3) ... 136s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 136s Setting up fonts-dejavu-mono (2.37-8) ... 136s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 136s Setting up fonts-dejavu-core (2.37-8) ... 136s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 136s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 136s Setting up libwebp7:arm64 (1.3.2-0.4) ... 136s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 136s Setting up libthai-data (0.1.29-2) ... 136s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 136s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 136s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 136s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 136s Setting up libice6:arm64 (2:1.0.10-1build2) ... 136s Setting up liblapack3:arm64 (3.12.0-3) ... 136s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 136s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 136s Setting up libthai0:arm64 (0.1.29-2) ... 136s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 136s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 136s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 136s Setting up fontconfig (2.15.0-1ubuntu1) ... 138s Regenerating fonts cache... done. 138s Setting up libxft2:arm64 (2.3.6-1) ... 138s Setting up libtk8.6:arm64 (8.6.13-2) ... 138s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 138s Setting up libcairo2:arm64 (1.18.0-1) ... 138s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 138s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 138s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 138s Setting up r-base-core (4.3.2-1build1) ... 138s 138s Creating config file /etc/R/Renviron with new version 138s Setting up r-cran-fastmatch (1.1-4-1) ... 138s Setting up r-cran-lattice (0.22-5-1) ... 138s Setting up r-cran-tinytest (1.4.1-1) ... 138s Setting up r-cran-nlme (3.1.164-1) ... 138s Setting up r-cran-pkgkitten (0.2.3-1) ... 138s Setting up r-cran-magrittr (2.0.3-1) ... 138s Setting up r-cran-quadprog (1.5-8-1build1) ... 138s Setting up r-cran-littler (0.3.19-1) ... 138s Setting up r-cran-rcpp (1.0.12-1) ... 138s Setting up r-cran-rlang (1.1.3-1) ... 138s Setting up littler (0.3.19-1) ... 138s Setting up r-cran-generics (0.1.3-1) ... 138s Setting up r-cran-digest (0.6.34-1) ... 138s Setting up r-cran-ape (5.7-1-1) ... 138s Setting up r-cran-glue (1.7.0-1) ... 138s Setting up r-cran-cli (3.6.2-1) ... 138s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 138s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 138s Setting up r-cran-cpp11 (0.4.7-1) ... 138s Setting up r-cran-matrix (1.6-5-1) ... 138s Setting up r-cran-igraph (1.6.0-1) ... 138s Setting up r-cran-phangorn (2.11.1+dfsg-1) ... 138s Setting up autopkgtest-satdep (0) ... 138s Processing triggers for man-db (2.12.0-3) ... 139s Processing triggers for install-info (7.1-3) ... 140s Processing triggers for libc-bin (2.39-0ubuntu2) ... 145s (Reading database ... 79003 files and directories currently installed.) 145s Removing autopkgtest-satdep (0) ... 146s autopkgtest [19:30:04]: test run-unit-test: [----------------------- 146s BEGIN TEST tinytest.R 147s 147s R version 4.3.2 (2023-10-31) -- "Eye Holes" 147s Copyright (C) 2023 The R Foundation for Statistical Computing 147s Platform: aarch64-unknown-linux-gnu (64-bit) 147s 147s R is free software and comes with ABSOLUTELY NO WARRANTY. 147s You are welcome to redistribute it under certain conditions. 147s Type 'license()' or 'licence()' for distribution details. 147s 147s R is a collaborative project with many contributors. 147s Type 'contributors()' for more information and 147s 'citation()' on how to cite R or R packages in publications. 147s 147s Type 'demo()' for some demos, 'help()' for on-line help, or 147s 'help.start()' for an HTML browser interface to help. 147s Type 'q()' to quit R. 147s 147s > if (require("tinytest", quietly=TRUE)){ 147s + set.seed(42) 147s + home <- length(unclass(packageVersion("phangorn"))[[1]]) == 4 # 0.0.0.9000 147s + if(home) { 147s + # Only run locally, let CRAN test examples and the vignette 147s + test_package("phangorn", at_home = home) 147s + } 147s + } 147s > 147s autopkgtest [19:30:05]: test run-unit-test: -----------------------] 148s autopkgtest [19:30:06]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 148s run-unit-test PASS 148s autopkgtest [19:30:06]: test pkg-r-autopkgtest: preparing testbed 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Starting pkgProblemResolver with broken count: 0 151s Starting 2 pkgProblemResolver with broken count: 0 151s Done 152s The following additional packages will be installed: 152s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 152s dctrl-tools fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ 152s g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 152s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 152s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 152s imagemagick-6-common javascript-common libasan8 libatomic1 libblas-dev 152s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdav1d7 libde265-0 152s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfftw3-double3 libgcc-13-dev 152s libgfortran-13-dev libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa 152s libglvnd0 libglx-mesa0 libglx0 libheif-plugin-dav1d libheif-plugin-libde265 152s libheif1 libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 152s libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 152s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 152s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 152s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 152s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblcms2-2 152s libllvm17 liblqr-1-0 liblsan0 libltdl7 liblua5.4-0 liblzma-dev 152s libmagick++-6.q16-9 libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmpc3 152s libncurses-dev libnsl-dev libopengl0 libopenjp2-7 libpcre2-16-0 152s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libraw23 152s libreadline-dev libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 libvulkan1 152s libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 152s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-sync1 libxcb-xfixes0 152s libxfixes3 libxshmfence1 libxxf86vm1 linux-libc-dev node-bootstrap-sass 152s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 152s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-bioc-biocgenerics 152s r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges 152s r-bioc-s4vectors r-bioc-seqlogo r-bioc-xvector r-bioc-zlibbioc r-cran-ade4 152s r-cran-base64enc r-cran-bitops r-cran-bslib r-cran-cachem r-cran-commonmark 152s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-ellipsis r-cran-evaluate 152s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-highr r-cran-htmltools 152s r-cran-htmlwidgets r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 152s r-cran-knitr r-cran-later r-cran-lazyeval r-cran-magick r-cran-mass 152s r-cran-memoise r-cran-mime r-cran-pixmap r-cran-promises r-cran-r6 152s r-cran-rappdirs r-cran-rcpparmadillo r-cran-rcurl r-cran-rgl 152s r-cran-rmarkdown r-cran-sass r-cran-segmented r-cran-seqinr r-cran-shiny 152s r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr r-cran-tinytex 152s r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto 152s zlib1g-dev 152s Suggested packages: 152s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 152s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 152s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 152s | lighttpd | httpd liblapack-doc glibc-doc libfftw3-bin libfftw3-dev 152s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 152s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 152s libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 152s fonts-stix libjs-mathjax-doc liblcms2-utils liblzma-doc 152s libmagickcore-6.q16-7-extra ncurses-doc readline-doc libstdc++-13-doc nodejs 152s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 152s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 152s ruby libjs-katex citation-style-language-styles texlive-base 152s texlive-latex-base texlive-plain-generic texlive-fonts-recommended 152s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-biobase 152s r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools 152s r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit 152s r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-biocstyle r-cran-r.utils 152s r-cran-data.table r-bioc-genomicalignments r-bioc-summarizedexperiment 152s r-bioc-shortread r-bioc-graph r-cran-testthat r-cran-adegraphics 152s r-cran-adephylo r-cran-deldir r-cran-spdep r-cran-waveslim r-cran-progress 152s r-cran-foreach r-cran-doparallel r-cran-iterators r-cran-rstudioapi 152s r-cran-markdown r-cran-covr r-cran-httr r-cran-roxygen2 r-cran-callr 152s r-cran-plm r-cran-zoo r-cran-survival 152s Recommended packages: 152s bzip2-doc manpages manpages-dev libc-devtools libgl1-amber-dri 152s libheif-plugin-aomenc libheif-plugin-x265 node-jquery ghostscript 152s fonts-urw-base35 libpng-tools mesa-vulkan-drivers | vulkan-icd 152s r-cran-ggplot2 r-cran-testthat r-cran-thematic r-cran-xml2 r-cran-mockery 152s r-cran-spelling r-cran-webutils r-cran-covr r-cran-dplyr r-cran-rsvg 152s r-cran-pillar r-cran-tibble r-cran-testit r-cran-cairo r-cran-markdown 152s r-cran-ragg r-cran-callr r-cran-httr r-cran-r.rsp r-cran-sf r-cran-codetools 152s r-cran-dbi r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-png 152s r-cran-reticulate r-cran-tikzdevice r-cran-webshot r-cran-rstudioapi 152s r-cran-svglite node-highlight.js r-cran-av r-cran-pdftools r-cran-irdisplay 152s r-cran-future r-cran-purrr r-cran-xml r-cran-dygraphs r-cran-rsconnect 152s r-cran-downlit r-cran-rcolorbrewer r-cran-gstat r-cran-deldir r-cran-terra 152s r-cran-raster r-cran-bit64 r-cran-pkgdown r-cran-waldo r-cran-zeallot 152s r-cran-rsqlite r-cran-remotes r-cran-renv r-cran-runit 152s The following NEW packages will be installed: 152s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 152s cpp-aarch64-linux-gnu dctrl-tools fonts-font-awesome 152s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 152s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 152s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 152s gfortran-aarch64-linux-gnu icu-devtools imagemagick-6-common 152s javascript-common libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin 152s libc6-dev libcc1-0 libcrypt-dev libdav1d7 libde265-0 libdrm-amdgpu1 152s libdrm-nouveau2 libdrm-radeon1 libfftw3-double3 libgcc-13-dev 152s libgfortran-13-dev libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa 152s libglvnd0 libglx-mesa0 libglx0 libheif-plugin-dav1d libheif-plugin-libde265 152s libheif1 libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 152s libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 152s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 152s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 152s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 152s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblcms2-2 152s libllvm17 liblqr-1-0 liblsan0 libltdl7 liblua5.4-0 liblzma-dev 152s libmagick++-6.q16-9 libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmpc3 152s libncurses-dev libnsl-dev libopengl0 libopenjp2-7 libpcre2-16-0 152s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libraw23 152s libreadline-dev libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 libvulkan1 152s libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 152s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-sync1 libxcb-xfixes0 152s libxfixes3 libxshmfence1 libxxf86vm1 linux-libc-dev node-bootstrap-sass 152s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 152s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-bioc-biocgenerics 152s r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges 152s r-bioc-s4vectors r-bioc-seqlogo r-bioc-xvector r-bioc-zlibbioc r-cran-ade4 152s r-cran-base64enc r-cran-bitops r-cran-bslib r-cran-cachem r-cran-commonmark 152s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-ellipsis r-cran-evaluate 152s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-highr r-cran-htmltools 152s r-cran-htmlwidgets r-cran-httpuv r-cran-jquerylib r-cran-jsonlite 152s r-cran-knitr r-cran-later r-cran-lazyeval r-cran-magick r-cran-mass 152s r-cran-memoise r-cran-mime r-cran-pixmap r-cran-promises r-cran-r6 152s r-cran-rappdirs r-cran-rcpparmadillo r-cran-rcurl r-cran-rgl 152s r-cran-rmarkdown r-cran-sass r-cran-segmented r-cran-seqinr r-cran-shiny 152s r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr r-cran-tinytex 152s r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto 152s zlib1g-dev 152s 0 upgraded, 188 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 244 MB/244 MB of archives. 152s After this operation, 922 MB of additional disk space will be used. 152s Get:1 /tmp/autopkgtest.SUpfVD/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [788 B] 152s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libfftw3-double3 arm64 3.3.10-1ubuntu1 [380 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 152s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 152s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 152s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 152s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 152s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 152s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 liblqr-1-0 arm64 0.4.2-2.1 [22.5 kB] 152s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 152s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 152s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libraw23 arm64 0.21.2-2 [381 kB] 152s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.4 [12.3 kB] 152s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.4 [25.0 kB] 152s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB] 152s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagickcore-6.q16-7 arm64 8:6.9.12.98+dfsg1-5 [1714 kB] 152s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagickwand-6.q16-7 arm64 8:6.9.12.98+dfsg1-5 [276 kB] 153s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 153s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 153s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 153s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 153s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 153s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 153s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 153s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 153s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 153s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 153s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 153s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 153s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 153s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 153s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 153s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 153s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 153s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 153s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 153s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 153s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 153s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 153s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 154s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 154s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 154s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 154s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 154s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 154s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 154s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 154s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 154s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 154s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 154s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 154s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 154s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 154s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 154s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 154s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 154s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 154s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 154s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 154s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 154s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 154s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 154s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 154s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 154s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 154s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 154s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 154s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 155s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 155s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 155s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 155s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 155s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 155s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 155s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 155s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 155s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 155s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 155s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 155s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 155s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 155s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 155s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 155s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 155s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 155s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 155s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 155s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 155s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 155s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 155s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 156s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 156s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 156s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 156s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 156s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 156s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 156s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 156s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 156s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 156s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 156s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libmagick++-6.q16-9 arm64 8:6.9.12.98+dfsg1-5 [144 kB] 156s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 156s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 156s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 156s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 156s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 156s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 156s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 156s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 156s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 156s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 156s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 156s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 156s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 156s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 157s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 157s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 157s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 157s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 157s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 157s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 157s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 157s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 157s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 157s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 157s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 158s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 158s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 158s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 158s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 158s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 158s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 159s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-seqlogo all 1.68.0+dfsg-1 [163 kB] 159s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 159s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pixmap all 0.4-12-1 [201 kB] 159s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 159s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 159s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ade4 arm64 1.7-22-1 [5324 kB] 159s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 159s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 159s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 159s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 159s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 159s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 159s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 159s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 159s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 159s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 159s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 159s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 159s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 159s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 159s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 159s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 159s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 159s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 159s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 159s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 159s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 159s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 159s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 159s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 159s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 159s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 159s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 159s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 159s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 159s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 159s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 159s Get:171 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 160s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 160s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 160s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 160s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 160s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 160s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 160s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 160s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 160s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magick arm64 2.8.2+dfsg-1build1 [455 kB] 160s Get:181 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 160s Get:182 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 160s Get:183 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 160s Get:184 http://ftpmaster.internal/ubuntu noble/main arm64 libopengl0 arm64 1.7.0-1 [35.9 kB] 160s Get:185 http://ftpmaster.internal/ubuntu noble/main arm64 libglu1-mesa arm64 9.0.2-1.1 [137 kB] 160s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rgl arm64 1.2.8-1 [3134 kB] 160s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-segmented all 2.0-3-1 [1252 kB] 160s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-seqinr arm64 4.2-36-1 [4013 kB] 161s Fetched 244 MB in 8s (29.1 MB/s) 161s Selecting previously unselected package libfftw3-double3:arm64. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79003 files and directories currently installed.) 161s Preparing to unpack .../000-libfftw3-double3_3.3.10-1ubuntu1_arm64.deb ... 161s Unpacking libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 161s Selecting previously unselected package libdav1d7:arm64. 161s Preparing to unpack .../001-libdav1d7_1.4.0-1_arm64.deb ... 161s Unpacking libdav1d7:arm64 (1.4.0-1) ... 161s Selecting previously unselected package libheif-plugin-dav1d:arm64. 162s Preparing to unpack .../002-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 162s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 162s Selecting previously unselected package libde265-0:arm64. 162s Preparing to unpack .../003-libde265-0_1.0.15-1_arm64.deb ... 162s Unpacking libde265-0:arm64 (1.0.15-1) ... 162s Selecting previously unselected package libheif-plugin-libde265:arm64. 162s Preparing to unpack .../004-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 162s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 162s Selecting previously unselected package libheif1:arm64. 162s Preparing to unpack .../005-libheif1_1.17.6-1ubuntu1_arm64.deb ... 162s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 162s Selecting previously unselected package liblcms2-2:arm64. 162s Preparing to unpack .../006-liblcms2-2_2.14-2_arm64.deb ... 162s Unpacking liblcms2-2:arm64 (2.14-2) ... 162s Selecting previously unselected package liblqr-1-0:arm64. 162s Preparing to unpack .../007-liblqr-1-0_0.4.2-2.1_arm64.deb ... 162s Unpacking liblqr-1-0:arm64 (0.4.2-2.1) ... 162s Selecting previously unselected package libltdl7:arm64. 162s Preparing to unpack .../008-libltdl7_2.4.7-7_arm64.deb ... 162s Unpacking libltdl7:arm64 (2.4.7-7) ... 162s Selecting previously unselected package libopenjp2-7:arm64. 162s Preparing to unpack .../009-libopenjp2-7_2.5.0-2_arm64.deb ... 162s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 162s Selecting previously unselected package libraw23:arm64. 162s Preparing to unpack .../010-libraw23_0.21.2-2_arm64.deb ... 162s Unpacking libraw23:arm64 (0.21.2-2) ... 162s Selecting previously unselected package libwebpdemux2:arm64. 162s Preparing to unpack .../011-libwebpdemux2_1.3.2-0.4_arm64.deb ... 162s Unpacking libwebpdemux2:arm64 (1.3.2-0.4) ... 162s Selecting previously unselected package libwebpmux3:arm64. 162s Preparing to unpack .../012-libwebpmux3_1.3.2-0.4_arm64.deb ... 162s Unpacking libwebpmux3:arm64 (1.3.2-0.4) ... 162s Selecting previously unselected package imagemagick-6-common. 162s Preparing to unpack .../013-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ... 162s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 162s Selecting previously unselected package libmagickcore-6.q16-7:arm64. 162s Preparing to unpack .../014-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_arm64.deb ... 162s Unpacking libmagickcore-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 162s Selecting previously unselected package libmagickwand-6.q16-7:arm64. 162s Preparing to unpack .../015-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_arm64.deb ... 162s Unpacking libmagickwand-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 162s Selecting previously unselected package libc-dev-bin. 162s Preparing to unpack .../016-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 162s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 162s Selecting previously unselected package linux-libc-dev:arm64. 162s Preparing to unpack .../017-linux-libc-dev_6.8.0-11.11_arm64.deb ... 162s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 162s Selecting previously unselected package libcrypt-dev:arm64. 162s Preparing to unpack .../018-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 162s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 162s Selecting previously unselected package libtirpc-dev:arm64. 162s Preparing to unpack .../019-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 162s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 163s Selecting previously unselected package libnsl-dev:arm64. 163s Preparing to unpack .../020-libnsl-dev_1.3.0-3_arm64.deb ... 163s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 163s Selecting previously unselected package rpcsvc-proto. 163s Preparing to unpack .../021-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 163s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 163s Selecting previously unselected package libc6-dev:arm64. 163s Preparing to unpack .../022-libc6-dev_2.39-0ubuntu2_arm64.deb ... 163s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 163s Selecting previously unselected package libisl23:arm64. 163s Preparing to unpack .../023-libisl23_0.26-3_arm64.deb ... 163s Unpacking libisl23:arm64 (0.26-3) ... 163s Selecting previously unselected package libmpc3:arm64. 163s Preparing to unpack .../024-libmpc3_1.3.1-1_arm64.deb ... 163s Unpacking libmpc3:arm64 (1.3.1-1) ... 163s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 163s Preparing to unpack .../025-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package cpp-13. 163s Preparing to unpack .../026-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package cpp-aarch64-linux-gnu. 163s Preparing to unpack .../027-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package cpp. 163s Preparing to unpack .../028-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking cpp (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package libcc1-0:arm64. 163s Preparing to unpack .../029-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libitm1:arm64. 163s Preparing to unpack .../030-libitm1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libatomic1:arm64. 163s Preparing to unpack .../031-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libasan8:arm64. 163s Preparing to unpack .../032-libasan8_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package liblsan0:arm64. 163s Preparing to unpack .../033-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libtsan2:arm64. 163s Preparing to unpack .../034-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libubsan1:arm64. 163s Preparing to unpack .../035-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libhwasan0:arm64. 164s Preparing to unpack .../036-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 164s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 164s Selecting previously unselected package libgcc-13-dev:arm64. 164s Preparing to unpack .../037-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 164s Preparing to unpack .../038-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gcc-13. 164s Preparing to unpack .../039-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gcc-aarch64-linux-gnu. 164s Preparing to unpack .../040-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package gcc. 164s Preparing to unpack .../041-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gcc (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package libstdc++-13-dev:arm64. 164s Preparing to unpack .../042-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package g++-13-aarch64-linux-gnu. 164s Preparing to unpack .../043-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package g++-13. 165s Preparing to unpack .../044-g++-13_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking g++-13 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package g++-aarch64-linux-gnu. 165s Preparing to unpack .../045-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package g++. 165s Preparing to unpack .../046-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking g++ (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package build-essential. 165s Preparing to unpack .../047-build-essential_12.10ubuntu1_arm64.deb ... 165s Unpacking build-essential (12.10ubuntu1) ... 165s Selecting previously unselected package dctrl-tools. 165s Preparing to unpack .../048-dctrl-tools_2.24-3build2_arm64.deb ... 165s Unpacking dctrl-tools (2.24-3build2) ... 165s Selecting previously unselected package fonts-font-awesome. 165s Preparing to unpack .../049-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 165s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 165s Selecting previously unselected package fonts-glyphicons-halflings. 165s Preparing to unpack .../050-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 165s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 165s Selecting previously unselected package fonts-mathjax. 165s Preparing to unpack .../051-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 165s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 165s Selecting previously unselected package libgfortran-13-dev:arm64. 165s Preparing to unpack .../052-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 165s Preparing to unpack .../053-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package gfortran-13. 165s Preparing to unpack .../054-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package gfortran-aarch64-linux-gnu. 165s Preparing to unpack .../055-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package gfortran. 165s Preparing to unpack .../056-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package icu-devtools. 165s Preparing to unpack .../057-icu-devtools_74.2-1ubuntu1_arm64.deb ... 165s Unpacking icu-devtools (74.2-1ubuntu1) ... 165s Selecting previously unselected package javascript-common. 165s Preparing to unpack .../058-javascript-common_11+nmu1_all.deb ... 165s Unpacking javascript-common (11+nmu1) ... 165s Selecting previously unselected package libblas-dev:arm64. 165s Preparing to unpack .../059-libblas-dev_3.12.0-3_arm64.deb ... 165s Unpacking libblas-dev:arm64 (3.12.0-3) ... 165s Selecting previously unselected package libbz2-dev:arm64. 166s Preparing to unpack .../060-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 166s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 166s Selecting previously unselected package libdrm-amdgpu1:arm64. 166s Preparing to unpack .../061-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 166s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 166s Selecting previously unselected package libdrm-nouveau2:arm64. 166s Preparing to unpack .../062-libdrm-nouveau2_2.4.120-2_arm64.deb ... 166s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 166s Selecting previously unselected package libdrm-radeon1:arm64. 166s Preparing to unpack .../063-libdrm-radeon1_2.4.120-2_arm64.deb ... 166s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 166s Selecting previously unselected package libvulkan1:arm64. 166s Preparing to unpack .../064-libvulkan1_1.3.275.0-1_arm64.deb ... 166s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 166s Selecting previously unselected package libglapi-mesa:arm64. 166s Preparing to unpack .../065-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 166s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 166s Selecting previously unselected package libllvm17:arm64. 166s Preparing to unpack .../066-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 166s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 166s Selecting previously unselected package libxcb-dri3-0:arm64. 166s Preparing to unpack .../067-libxcb-dri3-0_1.15-1_arm64.deb ... 166s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 166s Selecting previously unselected package libgl1-mesa-dri:arm64. 166s Preparing to unpack .../068-libgl1-mesa-dri_24.0.1-1ubuntu1_arm64.deb ... 166s Unpacking libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 167s Selecting previously unselected package libx11-xcb1:arm64. 167s Preparing to unpack .../069-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 167s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 167s Selecting previously unselected package libxcb-dri2-0:arm64. 167s Preparing to unpack .../070-libxcb-dri2-0_1.15-1_arm64.deb ... 167s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-glx0:arm64. 167s Preparing to unpack .../071-libxcb-glx0_1.15-1_arm64.deb ... 167s Unpacking libxcb-glx0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-present0:arm64. 167s Preparing to unpack .../072-libxcb-present0_1.15-1_arm64.deb ... 167s Unpacking libxcb-present0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-randr0:arm64. 167s Preparing to unpack .../073-libxcb-randr0_1.15-1_arm64.deb ... 167s Unpacking libxcb-randr0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-sync1:arm64. 167s Preparing to unpack .../074-libxcb-sync1_1.15-1_arm64.deb ... 167s Unpacking libxcb-sync1:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-xfixes0:arm64. 167s Preparing to unpack .../075-libxcb-xfixes0_1.15-1_arm64.deb ... 167s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxfixes3:arm64. 167s Preparing to unpack .../076-libxfixes3_1%3a6.0.0-2_arm64.deb ... 167s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 167s Selecting previously unselected package libxshmfence1:arm64. 167s Preparing to unpack .../077-libxshmfence1_1.3-1build4_arm64.deb ... 167s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 167s Selecting previously unselected package libxxf86vm1:arm64. 167s Preparing to unpack .../078-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 167s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 167s Selecting previously unselected package libglx-mesa0:arm64. 167s Preparing to unpack .../079-libglx-mesa0_24.0.1-1ubuntu1_arm64.deb ... 167s Unpacking libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 167s Selecting previously unselected package libicu-dev:arm64. 167s Preparing to unpack .../080-libicu-dev_74.2-1ubuntu1_arm64.deb ... 167s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 168s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 168s Preparing to unpack .../081-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 168s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 168s Selecting previously unselected package libjpeg8-dev:arm64. 168s Preparing to unpack .../082-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 168s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 168s Selecting previously unselected package libjpeg-dev:arm64. 168s Preparing to unpack .../083-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 168s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 168s Selecting previously unselected package libjs-bootstrap. 168s Preparing to unpack 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(0.12.6+dfsg-1.1) ... 168s Selecting previously unselected package libjs-jquery-ui. 168s Preparing to unpack .../095-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 168s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 168s Selecting previously unselected package libjs-json. 168s Preparing to unpack .../096-libjs-json_0~20221030+~1.0.8-1_all.deb ... 168s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 168s Selecting previously unselected package libjs-prettify. 168s Preparing to unpack .../097-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 168s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 168s Selecting previously unselected package liblapack-dev:arm64. 168s Preparing to unpack .../098-liblapack-dev_3.12.0-3_arm64.deb ... 168s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 169s Selecting previously unselected package liblua5.4-0:arm64. 169s Preparing to unpack .../099-liblua5.4-0_5.4.6-3_arm64.deb ... 169s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 169s Selecting previously unselected package libmagick++-6.q16-9:arm64. 169s Preparing to unpack .../100-libmagick++-6.q16-9_8%3a6.9.12.98+dfsg1-5_arm64.deb ... 169s Unpacking libmagick++-6.q16-9:arm64 (8:6.9.12.98+dfsg1-5) ... 169s Selecting previously unselected package libncurses-dev:arm64. 169s Preparing to unpack .../101-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 169s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 169s Selecting previously unselected package libpcre2-16-0:arm64. 169s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-32-0:arm64. 169s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-posix3:arm64. 169s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-dev:arm64. 169s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpkgconf3:arm64. 169s Preparing to unpack .../106-libpkgconf3_1.8.1-2_arm64.deb ... 169s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 169s Selecting previously unselected package zlib1g-dev:arm64. 169s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 169s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 169s Selecting previously unselected package libpng-dev:arm64. 169s Preparing to unpack .../108-libpng-dev_1.6.43-1_arm64.deb ... 169s Unpacking libpng-dev:arm64 (1.6.43-1) ... 169s Selecting previously unselected package libreadline-dev:arm64. 169s Preparing to unpack .../109-libreadline-dev_8.2-3_arm64.deb ... 169s Unpacking libreadline-dev:arm64 (8.2-3) ... 169s Selecting previously unselected package node-bootstrap-sass. 169s Preparing to unpack .../110-node-bootstrap-sass_3.4.3-2_all.deb ... 169s Unpacking node-bootstrap-sass (3.4.3-2) ... 169s Selecting previously unselected package node-html5shiv. 169s Preparing to unpack .../111-node-html5shiv_3.7.3+dfsg-5_all.deb ... 169s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 169s Selecting previously unselected package node-normalize.css. 169s Preparing to unpack .../112-node-normalize.css_8.0.1-5_all.deb ... 169s Unpacking node-normalize.css (8.0.1-5) ... 169s Selecting previously unselected package pandoc-data. 169s Preparing to unpack .../113-pandoc-data_3.1.3-1_all.deb ... 169s Unpacking pandoc-data (3.1.3-1) ... 169s Selecting previously unselected package pandoc. 169s Preparing to unpack .../114-pandoc_3.1.3+ds-2_arm64.deb ... 169s Unpacking pandoc (3.1.3+ds-2) ... 170s Selecting previously unselected package pkgconf-bin. 170s Preparing to unpack .../115-pkgconf-bin_1.8.1-2_arm64.deb ... 170s Unpacking pkgconf-bin (1.8.1-2) ... 170s Selecting previously unselected package pkgconf:arm64. 170s Preparing to unpack .../116-pkgconf_1.8.1-2_arm64.deb ... 170s Unpacking pkgconf:arm64 (1.8.1-2) ... 170s Selecting previously unselected package pkg-config:arm64. 170s Preparing to unpack .../117-pkg-config_1.8.1-2_arm64.deb ... 170s Unpacking pkg-config:arm64 (1.8.1-2) ... 170s Selecting previously unselected package liblzma-dev:arm64. 170s Preparing to unpack .../118-liblzma-dev_5.4.5-0.3_arm64.deb ... 170s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 170s Selecting previously unselected package r-base-dev. 170s Preparing to unpack .../119-r-base-dev_4.3.2-1build1_all.deb ... 170s Unpacking r-base-dev (4.3.2-1build1) ... 170s Selecting previously unselected package pkg-r-autopkgtest. 170s Preparing to unpack .../120-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 170s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 170s Selecting previously unselected package r-bioc-biocgenerics. 170s Preparing to unpack .../121-r-bioc-biocgenerics_0.48.1-2_all.deb ... 170s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 170s Selecting previously unselected package r-bioc-s4vectors. 171s Preparing to unpack .../122-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 171s Selecting previously unselected package r-bioc-iranges. 171s Preparing to unpack .../123-r-bioc-iranges_2.36.0-1_arm64.deb ... 171s Unpacking r-bioc-iranges (2.36.0-1) ... 171s Selecting previously unselected package r-bioc-zlibbioc. 171s Preparing to unpack .../124-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 171s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 171s Selecting previously unselected package r-bioc-xvector. 171s Preparing to unpack .../125-r-bioc-xvector_0.42.0-1_arm64.deb ... 171s Unpacking r-bioc-xvector (0.42.0-1) ... 171s Selecting previously unselected package r-cran-bitops. 171s Preparing to unpack .../126-r-cran-bitops_1.0-7-1_arm64.deb ... 171s Unpacking r-cran-bitops (1.0-7-1) ... 171s Selecting previously unselected package r-cran-rcurl. 171s Preparing to unpack .../127-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 171s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 171s Selecting previously unselected package r-bioc-genomeinfodbdata. 171s Preparing to unpack .../128-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 171s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 171s Selecting previously unselected package r-bioc-genomeinfodb. 171s Preparing to unpack .../129-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 171s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 171s Selecting previously unselected package r-cran-crayon. 171s Preparing to unpack .../130-r-cran-crayon_1.5.2-1_all.deb ... 171s Unpacking r-cran-crayon (1.5.2-1) ... 171s Selecting previously unselected package r-bioc-biostrings. 171s Preparing to unpack .../131-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 171s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 171s Selecting previously unselected package r-bioc-seqlogo. 171s Preparing to unpack .../132-r-bioc-seqlogo_1.68.0+dfsg-1_all.deb ... 171s Unpacking r-bioc-seqlogo (1.68.0+dfsg-1) ... 171s Selecting previously unselected package r-cran-mass. 171s Preparing to unpack .../133-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 171s Unpacking r-cran-mass (7.3-60.0.1-1) ... 171s Selecting previously unselected package r-cran-pixmap. 171s Preparing to unpack .../134-r-cran-pixmap_0.4-12-1_all.deb ... 171s Unpacking r-cran-pixmap (0.4-12-1) ... 171s Selecting previously unselected package r-cran-sp. 171s Preparing to unpack .../135-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 171s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 171s Selecting previously unselected package r-cran-rcpparmadillo. 171s Preparing to unpack .../136-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 171s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 171s Selecting previously unselected package r-cran-ade4. 171s Preparing to unpack .../137-r-cran-ade4_1.7-22-1_arm64.deb ... 171s Unpacking r-cran-ade4 (1.7-22-1) ... 172s Selecting previously unselected package r-cran-base64enc. 172s Preparing to unpack .../138-r-cran-base64enc_0.1-3-3_arm64.deb ... 172s Unpacking r-cran-base64enc (0.1-3-3) ... 172s Selecting previously unselected package r-cran-fastmap. 172s Preparing to unpack .../139-r-cran-fastmap_1.1.1-1_arm64.deb ... 172s Unpacking r-cran-fastmap (1.1.1-1) ... 172s Selecting previously unselected package r-cran-cachem. 172s Preparing to unpack .../140-r-cran-cachem_1.0.8-1_arm64.deb ... 172s Unpacking r-cran-cachem (1.0.8-1) ... 172s Selecting previously unselected package r-cran-ellipsis. 172s Preparing to unpack .../141-r-cran-ellipsis_0.3.2-2_arm64.deb ... 172s Unpacking r-cran-ellipsis (0.3.2-2) ... 172s Selecting previously unselected package r-cran-htmltools. 172s Preparing to unpack .../142-r-cran-htmltools_0.5.7-1_arm64.deb ... 172s Unpacking r-cran-htmltools (0.5.7-1) ... 172s Selecting previously unselected package r-cran-jquerylib. 172s Preparing to unpack .../143-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 172s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 172s Selecting previously unselected package r-cran-jsonlite. 172s Preparing to unpack .../144-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 172s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 172s Selecting previously unselected package r-cran-memoise. 172s Preparing to unpack .../145-r-cran-memoise_2.0.1-1_all.deb ... 172s Unpacking r-cran-memoise (2.0.1-1) ... 172s Selecting previously unselected package r-cran-mime. 172s Preparing to unpack .../146-r-cran-mime_0.12-1_arm64.deb ... 172s Unpacking r-cran-mime (0.12-1) ... 172s Selecting previously unselected package r-cran-fs. 172s Preparing to unpack .../147-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 172s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 172s Selecting previously unselected package r-cran-r6. 172s Preparing to unpack .../148-r-cran-r6_2.5.1-1_all.deb ... 172s Unpacking r-cran-r6 (2.5.1-1) ... 172s Selecting previously unselected package r-cran-rappdirs. 172s Preparing to unpack .../149-r-cran-rappdirs_0.3.3-1_arm64.deb ... 172s Unpacking r-cran-rappdirs (0.3.3-1) ... 172s Selecting previously unselected package r-cran-sass. 172s Preparing to unpack .../150-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 172s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 172s Selecting previously unselected package r-cran-bslib. 172s Preparing to unpack .../151-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 172s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 172s Selecting previously unselected package r-cran-commonmark. 172s Preparing to unpack .../152-r-cran-commonmark_1.9.1-1_arm64.deb ... 172s Unpacking r-cran-commonmark (1.9.1-1) ... 172s Selecting previously unselected package r-cran-lazyeval. 172s Preparing to unpack .../153-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 172s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 172s Selecting previously unselected package r-cran-later. 172s Preparing to unpack .../154-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 172s Unpacking r-cran-later (1.3.2+dfsg-1) ... 172s Selecting previously unselected package r-cran-promises. 172s Preparing to unpack .../155-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 172s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 172s Selecting previously unselected package r-cran-httpuv. 173s Preparing to unpack .../156-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 173s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 173s Selecting previously unselected package r-cran-xtable. 173s Preparing to unpack .../157-r-cran-xtable_1%3a1.8-4-2_all.deb ... 173s Unpacking r-cran-xtable (1:1.8-4-2) ... 173s Selecting previously unselected package r-cran-fontawesome. 173s Preparing to unpack .../158-r-cran-fontawesome_0.5.2-1_all.deb ... 173s Unpacking r-cran-fontawesome (0.5.2-1) ... 173s Selecting previously unselected package r-cran-sourcetools. 173s Preparing to unpack .../159-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 173s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 173s Selecting previously unselected package r-cran-withr. 173s Preparing to unpack .../160-r-cran-withr_2.5.0-1_all.deb ... 173s Unpacking r-cran-withr (2.5.0-1) ... 173s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 173s Preparing to unpack .../161-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 173s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 173s Selecting previously unselected package r-cran-shiny. 173s Preparing to unpack .../162-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 173s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-crosstalk. 173s Preparing to unpack .../163-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 173s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 173s Selecting previously unselected package r-cran-curl. 173s Preparing to unpack .../164-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 173s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-evaluate. 173s Preparing to unpack .../165-r-cran-evaluate_0.23-1_all.deb ... 173s Unpacking r-cran-evaluate (0.23-1) ... 173s Selecting previously unselected package r-cran-xfun. 173s Preparing to unpack .../166-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 173s Unpacking r-cran-xfun (0.41+dfsg-1) ... 173s Selecting previously unselected package r-cran-highr. 173s Preparing to unpack .../167-r-cran-highr_0.10+dfsg-1_all.deb ... 173s Unpacking r-cran-highr (0.10+dfsg-1) ... 173s Selecting previously unselected package r-cran-yaml. 173s Preparing to unpack .../168-r-cran-yaml_2.3.8-1_arm64.deb ... 173s Unpacking r-cran-yaml (2.3.8-1) ... 173s Selecting previously unselected package libjs-mathjax. 173s Preparing to unpack .../169-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 173s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 174s Selecting previously unselected package r-cran-knitr. 174s Preparing to unpack .../170-r-cran-knitr_1.45+dfsg-1_all.deb ... 174s Unpacking r-cran-knitr (1.45+dfsg-1) ... 174s Selecting previously unselected package r-cran-stringi. 174s Preparing to unpack .../171-r-cran-stringi_1.8.3-1_arm64.deb ... 174s Unpacking r-cran-stringi (1.8.3-1) ... 174s Selecting previously unselected package r-cran-vctrs. 174s Preparing to unpack .../172-r-cran-vctrs_0.6.5-1_arm64.deb ... 174s Unpacking r-cran-vctrs (0.6.5-1) ... 174s Selecting previously unselected package r-cran-stringr. 174s Preparing to unpack .../173-r-cran-stringr_1.5.1-1_all.deb ... 174s Unpacking r-cran-stringr (1.5.1-1) ... 174s Selecting previously unselected package r-cran-tinytex. 174s Preparing to unpack .../174-r-cran-tinytex_0.49-1_all.deb ... 174s Unpacking r-cran-tinytex (0.49-1) ... 174s Selecting previously unselected package libjs-modernizr. 174s Preparing to unpack .../175-libjs-modernizr_2.6.2+ds1-5_all.deb ... 174s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 174s Selecting previously unselected package r-cran-rmarkdown. 174s Preparing to unpack .../176-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 174s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 174s Selecting previously unselected package r-cran-htmlwidgets. 174s Preparing to unpack .../177-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 174s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 174s Selecting previously unselected package r-cran-magick. 174s Preparing to unpack .../178-r-cran-magick_2.8.2+dfsg-1build1_arm64.deb ... 174s Unpacking r-cran-magick (2.8.2+dfsg-1build1) ... 174s Selecting previously unselected package libglvnd0:arm64. 174s Preparing to unpack .../179-libglvnd0_1.7.0-1_arm64.deb ... 174s Unpacking libglvnd0:arm64 (1.7.0-1) ... 174s Selecting previously unselected package libglx0:arm64. 174s Preparing to unpack .../180-libglx0_1.7.0-1_arm64.deb ... 174s Unpacking libglx0:arm64 (1.7.0-1) ... 174s Selecting previously unselected package libgl1:arm64. 174s Preparing to unpack .../181-libgl1_1.7.0-1_arm64.deb ... 174s Unpacking libgl1:arm64 (1.7.0-1) ... 174s Selecting previously unselected package libopengl0:arm64. 174s Preparing to unpack .../182-libopengl0_1.7.0-1_arm64.deb ... 174s Unpacking libopengl0:arm64 (1.7.0-1) ... 174s Selecting previously unselected package libglu1-mesa:arm64. 174s Preparing to unpack .../183-libglu1-mesa_9.0.2-1.1_arm64.deb ... 174s Unpacking libglu1-mesa:arm64 (9.0.2-1.1) ... 174s Selecting previously unselected package r-cran-rgl. 174s Preparing to unpack .../184-r-cran-rgl_1.2.8-1_arm64.deb ... 174s Unpacking r-cran-rgl (1.2.8-1) ... 175s Selecting previously unselected package r-cran-segmented. 175s Preparing to unpack .../185-r-cran-segmented_2.0-3-1_all.deb ... 175s Unpacking r-cran-segmented (2.0-3-1) ... 175s Selecting previously unselected package r-cran-seqinr. 175s Preparing to unpack .../186-r-cran-seqinr_4.2-36-1_arm64.deb ... 175s Unpacking r-cran-seqinr (4.2-36-1) ... 175s Selecting previously unselected package autopkgtest-satdep. 175s Preparing to unpack .../187-2-autopkgtest-satdep.deb ... 175s Unpacking autopkgtest-satdep (0) ... 175s Setting up libjs-json (0~20221030+~1.0.8-1) ... 175s Setting up javascript-common (11+nmu1) ... 175s Setting up r-cran-ellipsis (0.3.2-2) ... 175s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 175s Setting up liblcms2-2:arm64 (2.14-2) ... 175s Setting up r-cran-fs (1.6.3+dfsg-1) ... 175s Setting up r-cran-curl (5.2.0+dfsg-1) ... 175s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 175s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 175s Setting up r-bioc-biocgenerics (0.48.1-2) ... 175s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 175s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 175s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 175s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 175s Setting up libjs-popper.js (1.16.1+ds-6) ... 175s Setting up r-cran-xfun (0.41+dfsg-1) ... 175s Setting up r-cran-withr (2.5.0-1) ... 175s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 175s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 175s 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libltdl7:arm64 (2.4.7-7) ... 175s Setting up libfftw3-double3:arm64 (3.3.10-1ubuntu1) ... 175s Setting up r-cran-htmltools (0.5.7-1) ... 175s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 175s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 175s Setting up r-cran-tinytex (0.49-1) ... 175s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 175s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 175s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 175s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 175s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 175s Setting up libdav1d7:arm64 (1.4.0-1) ... 175s Setting up liblqr-1-0:arm64 (0.4.2-2.1) ... 175s Setting up libnsl-dev:arm64 (1.3.0-3) ... 175s Setting up libxshmfence1:arm64 (1.3-1build4) ... 175s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 175s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 175s Setting up libxcb-randr0:arm64 (1.15-1) ... 175s Setting up r-cran-pixmap (0.4-12-1) ... 175s Setting up libasan8:arm64 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libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 175s Setting up r-cran-stringr (1.5.1-1) ... 175s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 175s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 175s Setting up r-cran-highr (0.10+dfsg-1) ... 175s Setting up r-cran-fontawesome (0.5.2-1) ... 175s Setting up r-cran-ade4 (1.7-22-1) ... 175s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 175s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 175s Setting up pkgconf:arm64 (1.8.1-2) ... 175s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 175s Setting up pandoc (3.1.3+ds-2) ... 175s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 175s Setting up r-cran-memoise (2.0.1-1) ... 175s Setting up liblapack-dev:arm64 (3.12.0-3) ... 175s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 175s Setting up r-cran-promises (1.2.1+dfsg-1) ... 175s Setting up pkg-config:arm64 (1.8.1-2) ... 175s Setting up r-cran-knitr (1.45+dfsg-1) ... 175s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 175s Setting up r-cran-sass (0.4.8+dfsg-1) ... 175s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 175s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 175s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 175s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 175s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 175s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 175s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 175s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 175s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 175s Setting up libglx0:arm64 (1.7.0-1) ... 175s Setting up r-cran-seqinr (4.2-36-1) ... 175s Setting up cpp-13 (13.2.0-17ubuntu2) ... 175s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 175s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up libreadline-dev:arm64 (8.2-3) ... 175s Setting up libgl1:arm64 (1.7.0-1) ... 175s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 175s Setting up gcc-13 (13.2.0-17ubuntu2) ... 175s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 175s Setting up cpp (4:13.2.0-7ubuntu1) ... 175s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 175s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up g++-13 (13.2.0-17ubuntu2) ... 175s Setting up libpng-dev:arm64 (1.6.43-1) ... 175s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 175s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 175s Setting up gcc (4:13.2.0-7ubuntu1) ... 175s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 175s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 175s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 175s Setting up r-bioc-xvector (0.42.0-1) ... 175s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 175s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 175s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 175s Setting up gfortran (4:13.2.0-7ubuntu1) ... 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 175s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 175s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 175s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 175s Setting up r-cran-rgl (1.2.8-1) ... 175s Setting up g++ (4:13.2.0-7ubuntu1) ... 175s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 175s Setting up build-essential (12.10ubuntu1) ... 175s Setting up r-base-dev (4.3.2-1build1) ... 175s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 175s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 175s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 175s Setting up libmagickcore-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 175s Setting up libmagickwand-6.q16-7:arm64 (8:6.9.12.98+dfsg1-5) ... 175s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 175s Setting up libmagick++-6.q16-9:arm64 (8:6.9.12.98+dfsg1-5) ... 175s Setting up r-cran-magick (2.8.2+dfsg-1build1) ... 175s Setting up autopkgtest-satdep (0) ... 175s Processing triggers for libc-bin (2.39-0ubuntu2) ... 175s Processing triggers for man-db (2.12.0-3) ... 176s Processing triggers for install-info (7.1-3) ... 176s Processing triggers for fontconfig (2.15.0-1ubuntu1) ... 179s (Reading database ... 95251 files and directories currently installed.) 179s Removing autopkgtest-satdep (0) ... 180s autopkgtest [19:30:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 180s autopkgtest [19:30:38]: test pkg-r-autopkgtest: [----------------------- 180s Test: Try to load the R library phangorn 180s 180s R version 4.3.2 (2023-10-31) -- "Eye Holes" 180s Copyright (C) 2023 The R Foundation for Statistical Computing 180s Platform: aarch64-unknown-linux-gnu (64-bit) 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > library('phangorn') 180s Loading required package: ape 182s code for methods in class “Rcpp_Fitch” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 182s code for methods in class “Rcpp_Fitch” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) 182s > 182s > 182s Other tests are currently unsupported! 182s They will be progressively added. 182s autopkgtest [19:30:40]: test pkg-r-autopkgtest: -----------------------] 183s pkg-r-autopkgtest PASS 183s autopkgtest [19:30:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 183s autopkgtest [19:30:41]: @@@@@@@@@@@@@@@@@@@@ summary 183s run-unit-test PASS 183s pkg-r-autopkgtest PASS 201s Creating nova instance adt-noble-arm64-r-cran-phangorn-20240316-192738-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...