0s autopkgtest [19:25:42]: starting date and time: 2024-03-16 19:25:42+0000
  0s autopkgtest [19:25:42]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [19:25:42]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d1m90qln/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-pcict --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-cran-pcict-20240316-192542-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
139s autopkgtest [19:28:01]: testbed dpkg architecture: arm64
139s autopkgtest [19:28:01]: testbed apt version: 2.7.12
139s autopkgtest [19:28:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup
140s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
140s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
140s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3657 kB]
141s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
141s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
141s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
141s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
141s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
141s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4013 kB]
141s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
141s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB]
141s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
142s Fetched 9065 kB in 2s (5281 kB/s)
143s Reading package lists...
145s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s Calculating upgrade...
146s The following packages will be REMOVED:
146s   libglib2.0-0 libssl3
146s The following NEW packages will be installed:
146s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
146s The following packages have been kept back:
146s   curl
146s The following packages will be upgraded:
146s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
146s   ubuntu-minimal ubuntu-standard
147s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
147s Need to get 4613 kB of archives.
147s After this operation, 211 kB of additional disk space will be used.
147s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
147s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
147s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
147s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
147s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
147s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
147s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
147s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
147s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
147s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
148s Fetched 4613 kB in 1s (6603 kB/s)
148s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
148s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
148s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
149s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
149s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
149s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
149s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
149s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
149s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
149s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
149s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
149s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
149s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
149s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
149s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
149s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
149s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
149s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
149s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
149s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
149s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
149s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
149s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
149s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
149s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
149s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
149s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
149s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
149s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
149s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
149s  fwupd depends on libglib2.0-0 (>= 2.79.0).
149s  bolt depends on libglib2.0-0 (>= 2.56.0).
149s 
149s (Reading database ... 
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149s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
149s Selecting previously unselected package libglib2.0-0t64:arm64.
149s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
149s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
149s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
149s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
149s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
149s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
149s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
149s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
149s  wget depends on libssl3 (>= 3.0.0).
149s  u-boot-tools depends on libssl3 (>= 3.0.0).
149s  tnftp depends on libssl3 (>= 3.0.0).
149s  tcpdump depends on libssl3 (>= 3.0.0).
149s  systemd-resolved depends on libssl3 (>= 3.0.0).
149s  systemd depends on libssl3 (>= 3.0.0).
149s  sudo depends on libssl3 (>= 3.0.0).
149s  sbsigntool depends on libssl3 (>= 3.0.0).
149s  rsync depends on libssl3 (>= 3.0.0).
149s  python3-cryptography depends on libssl3 (>= 3.0.0).
149s  openssh-server depends on libssl3 (>= 3.0.10).
149s  openssh-client depends on libssl3 (>= 3.0.10).
149s  mtd-utils depends on libssl3 (>= 3.0.0).
149s  mokutil depends on libssl3 (>= 3.0.0).
149s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
149s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
149s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
149s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
149s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
149s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
149s  libnvme1 depends on libssl3 (>= 3.0.0).
149s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
149s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
149s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
149s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
149s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
149s  kmod depends on libssl3 (>= 3.0.0).
149s  dhcpcd-base depends on libssl3 (>= 3.0.0).
149s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
149s 
149s (Reading database ... 
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149s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
149s Selecting previously unselected package libssl3t64:arm64.
149s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
149s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
149s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
149s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
149s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
149s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
149s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
149s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
149s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
149s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
149s Unpacking ubuntu-minimal (1.536) over (1.535) ...
149s Selecting previously unselected package xdg-user-dirs.
149s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
149s Unpacking xdg-user-dirs (0.18-1) ...
149s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
149s Unpacking ubuntu-standard (1.536) over (1.535) ...
149s Setting up ubuntu-minimal (1.536) ...
149s Setting up xdg-user-dirs (0.18-1) ...
149s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
149s Setting up libtirpc-common (1.3.4+ds-1.1) ...
149s Setting up ubuntu-standard (1.536) ...
149s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
149s No schema files found: doing nothing.
149s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
149s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
149s Setting up openssl (3.0.13-0ubuntu1) ...
149s Setting up readline-common (8.2-3.1) ...
149s Processing triggers for man-db (2.12.0-3) ...
150s Processing triggers for install-info (7.1-3) ...
150s Processing triggers for libc-bin (2.39-0ubuntu2) ...
151s Reading package lists...
151s Building dependency tree...
151s Reading state information...
151s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
152s sh: Attempting to set up Debian/Ubuntu apt sources automatically
152s sh: Distribution appears to be Ubuntu
153s Reading package lists...
153s Building dependency tree...
153s Reading state information...
154s eatmydata is already the newest version (131-1).
154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s dbus is already the newest version (1.14.10-4ubuntu1).
154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s Reading package lists...
155s Building dependency tree...
155s Reading state information...
155s rng-tools-debian is already the newest version (2.4).
155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
155s Reading package lists...
156s Building dependency tree...
156s Reading state information...
156s The following packages will be REMOVED:
156s   cloud-init* python3-configobj* python3-debconf*
156s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
156s After this operation, 3252 kB disk space will be freed.
157s (Reading database ... 
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(Reading database ... 74774 files and directories currently installed.)
157s Removing cloud-init (24.1.1-0ubuntu1) ...
157s Removing python3-configobj (5.0.8-3) ...
157s Removing python3-debconf (1.5.86) ...
157s Processing triggers for man-db (2.12.0-3) ...
158s (Reading database ... 
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(Reading database ... 74385 files and directories currently installed.)
158s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
158s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
158s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
158s invoke-rc.d: policy-rc.d denied execution of try-restart.
159s Reading package lists...
159s Building dependency tree...
159s Reading state information...
159s linux-generic is already the newest version (6.8.0-11.11+1).
159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
160s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
160s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
160s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
162s Reading package lists...
162s Reading package lists...
163s Building dependency tree...
163s Reading state information...
163s Calculating upgrade...
164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
164s Reading package lists...
164s Building dependency tree...
164s Reading state information...
165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
165s autopkgtest [19:28:27]: rebooting testbed after setup commands that affected boot
193s autopkgtest [19:28:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
195s autopkgtest [19:28:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-pcict
197s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-pcict 0.5-4.4-1 (dsc) [2086 B]
197s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-pcict 0.5-4.4-1 (tar) [29.2 kB]
197s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-pcict 0.5-4.4-1 (diff) [2512 B]
198s gpgv: Signature made Mon Feb 20 13:31:12 2023 UTC
198s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
198s gpgv:                issuer "tille@debian.org"
198s gpgv: Can't check signature: No public key
198s dpkg-source: warning: cannot verify inline signature for ./r-cran-pcict_0.5-4.4-1.dsc: no acceptable signature found
198s autopkgtest [19:29:00]: testing package r-cran-pcict version 0.5-4.4-1
198s autopkgtest [19:29:00]: build not needed
199s autopkgtest [19:29:01]: test run-unit-test: preparing testbed
200s Reading package lists...
201s Building dependency tree...
201s Reading state information...
201s Starting pkgProblemResolver with broken count: 0
201s Starting 2 pkgProblemResolver with broken count: 0
201s Done
202s The following additional packages will be installed:
202s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
202s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
202s   libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
202s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
202s   libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
202s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
202s   libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-pcict r-cran-runit
202s   unzip x11-common xdg-utils zip
202s Suggested packages:
202s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
202s Recommended packages:
202s   r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
202s   libx11-protocol-perl x11-utils x11-xserver-utils
202s The following NEW packages will be installed:
202s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
202s   fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1
202s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0
202s   libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0
202s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
202s   libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
202s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6
202s   r-base-core r-cran-pcict r-cran-runit unzip x11-common xdg-utils zip
202s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
202s Need to get 37.0 MB/37.0 MB of archives.
202s After this operation, 75.8 MB of additional disk space will be used.
202s Get:1 /tmp/autopkgtest.iENfnK/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B]
202s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
202s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
202s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
202s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
202s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
202s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
202s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
203s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
203s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
203s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
203s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
203s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
203s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
203s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
203s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
203s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
203s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
203s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
203s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
203s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
203s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
203s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
203s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
203s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
203s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
203s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
203s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
203s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
203s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
203s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
203s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
203s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
203s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
203s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
203s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
203s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
203s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
203s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
203s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
203s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
203s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
203s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
203s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
203s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
204s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pcict arm64 0.5-4.4-1 [94.0 kB]
204s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB]
204s Preconfiguring packages ...
205s Fetched 37.0 MB in 2s (18.9 MB/s)
205s Selecting previously unselected package fonts-dejavu-mono.
205s (Reading database ... 
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205s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
205s Unpacking fonts-dejavu-mono (2.37-8) ...
205s Selecting previously unselected package fonts-dejavu-core.
205s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
205s Unpacking fonts-dejavu-core (2.37-8) ...
205s Selecting previously unselected package fontconfig-config.
205s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
205s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
205s Selecting previously unselected package libfontconfig1:arm64.
205s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
205s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
205s Selecting previously unselected package fontconfig.
205s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
205s Unpacking fontconfig (2.15.0-1ubuntu1) ...
205s Selecting previously unselected package libblas3:arm64.
205s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ...
205s Unpacking libblas3:arm64 (3.12.0-3) ...
205s Selecting previously unselected package libpixman-1-0:arm64.
205s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ...
205s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
205s Selecting previously unselected package libxcb-render0:arm64.
205s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ...
205s Unpacking libxcb-render0:arm64 (1.15-1) ...
205s Selecting previously unselected package libxcb-shm0:arm64.
205s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ...
205s Unpacking libxcb-shm0:arm64 (1.15-1) ...
205s Selecting previously unselected package libxrender1:arm64.
205s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
205s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
205s Selecting previously unselected package libcairo2:arm64.
206s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ...
206s Unpacking libcairo2:arm64 (1.18.0-1) ...
206s Selecting previously unselected package libdatrie1:arm64.
206s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ...
206s Unpacking libdatrie1:arm64 (0.2.13-3) ...
206s Selecting previously unselected package libdeflate0:arm64.
206s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ...
206s Unpacking libdeflate0:arm64 (1.19-1) ...
206s Selecting previously unselected package libgfortran5:arm64.
206s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
206s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
206s Selecting previously unselected package libgomp1:arm64.
206s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
206s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
206s Selecting previously unselected package libgraphite2-3:arm64.
206s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ...
206s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
206s Selecting previously unselected package libharfbuzz0b:arm64.
206s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ...
206s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
206s Selecting previously unselected package x11-common.
206s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ...
206s Unpacking x11-common (1:7.7+23ubuntu2) ...
206s Selecting previously unselected package libice6:arm64.
206s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ...
206s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
206s Selecting previously unselected package libjpeg-turbo8:arm64.
206s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
206s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
206s Selecting previously unselected package libjpeg8:arm64.
206s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ...
206s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
206s Selecting previously unselected package liblapack3:arm64.
206s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ...
206s Unpacking liblapack3:arm64 (3.12.0-3) ...
206s Selecting previously unselected package liblerc4:arm64.
206s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
206s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
206s Selecting previously unselected package libthai-data.
206s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ...
206s Unpacking libthai-data (0.1.29-2) ...
206s Selecting previously unselected package libthai0:arm64.
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206s Unpacking libthai0:arm64 (0.1.29-2) ...
206s Selecting previously unselected package libpango-1.0-0:arm64.
206s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
206s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
206s Selecting previously unselected package libpangoft2-1.0-0:arm64.
206s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
206s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
206s Selecting previously unselected package libpangocairo-1.0-0:arm64.
206s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
206s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
206s Selecting previously unselected package libpaper1:arm64.
206s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ...
206s Unpacking libpaper1:arm64 (1.1.29) ...
206s Selecting previously unselected package libpaper-utils.
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206s Unpacking libpaper-utils (1.1.29) ...
206s Selecting previously unselected package libsharpyuv0:arm64.
206s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ...
206s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
206s Selecting previously unselected package libsm6:arm64.
206s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ...
206s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
206s Selecting previously unselected package libtcl8.6:arm64.
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206s Selecting previously unselected package libjbig0:arm64.
206s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
206s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
206s Selecting previously unselected package libwebp7:arm64.
206s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ...
206s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
206s Selecting previously unselected package libtiff6:arm64.
206s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
206s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
206s Selecting previously unselected package libxft2:arm64.
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206s Selecting previously unselected package libxss1:arm64.
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206s Selecting previously unselected package libtk8.6:arm64.
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206s Selecting previously unselected package libxt6:arm64.
207s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ...
207s Unpacking libxt6:arm64 (1:1.2.1-1.1) ...
207s Selecting previously unselected package zip.
207s Preparing to unpack .../40-zip_3.0-13_arm64.deb ...
207s Unpacking zip (3.0-13) ...
207s Selecting previously unselected package unzip.
207s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ...
207s Unpacking unzip (6.0-28ubuntu3) ...
207s Selecting previously unselected package xdg-utils.
207s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
207s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
207s Selecting previously unselected package r-base-core.
207s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ...
207s Unpacking r-base-core (4.3.2-1build1) ...
207s Selecting previously unselected package r-cran-pcict.
207s Preparing to unpack .../44-r-cran-pcict_0.5-4.4-1_arm64.deb ...
207s Unpacking r-cran-pcict (0.5-4.4-1) ...
207s Selecting previously unselected package r-cran-runit.
207s Preparing to unpack .../45-r-cran-runit_0.4.32-3_all.deb ...
207s Unpacking r-cran-runit (0.4.32-3) ...
207s Selecting previously unselected package autopkgtest-satdep.
207s Preparing to unpack .../46-1-autopkgtest-satdep.deb ...
207s Unpacking autopkgtest-satdep (0) ...
207s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
207s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
207s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
207s Setting up libpaper1:arm64 (1.1.29) ...
207s 
207s Creating config file /etc/papersize with new version
207s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
207s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
207s Setting up libdatrie1:arm64 (0.2.13-3) ...
207s Setting up libxcb-render0:arm64 (1.15-1) ...
207s Setting up unzip (6.0-28ubuntu3) ...
207s Setting up x11-common (1:7.7+23ubuntu2) ...
208s Setting up libdeflate0:arm64 (1.19-1) ...
208s Setting up libxcb-shm0:arm64 (1.15-1) ...
208s Setting up libpaper-utils (1.1.29) ...
208s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
208s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
208s Setting up zip (3.0-13) ...
208s Setting up libblas3:arm64 (3.12.0-3) ...
208s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
208s Setting up fonts-dejavu-mono (2.37-8) ...
208s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
208s Setting up fonts-dejavu-core (2.37-8) ...
208s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
208s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
208s Setting up libwebp7:arm64 (1.3.2-0.4) ...
208s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
208s Setting up libthai-data (0.1.29-2) ...
208s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
208s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
208s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
208s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
208s Setting up libice6:arm64 (2:1.0.10-1build2) ...
208s Setting up liblapack3:arm64 (3.12.0-3) ...
208s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
208s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
208s Setting up libthai0:arm64 (0.1.29-2) ...
208s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
208s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
208s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
208s Setting up fontconfig (2.15.0-1ubuntu1) ...
210s Regenerating fonts cache... done.
210s Setting up libxft2:arm64 (2.3.6-1) ...
210s Setting up libtk8.6:arm64 (8.6.13-2) ...
210s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
210s Setting up libcairo2:arm64 (1.18.0-1) ...
210s Setting up libxt6:arm64 (1:1.2.1-1.1) ...
210s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
210s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
210s Setting up r-base-core (4.3.2-1build1) ...
210s 
210s Creating config file /etc/R/Renviron with new version
210s Setting up r-cran-pcict (0.5-4.4-1) ...
210s Setting up r-cran-runit (0.4.32-3) ...
210s Setting up autopkgtest-satdep (0) ...
210s Processing triggers for man-db (2.12.0-3) ...
211s Processing triggers for install-info (7.1-3) ...
211s Processing triggers for libc-bin (2.39-0ubuntu2) ...
215s (Reading database ... 76408 files and directories currently installed.)
215s Removing autopkgtest-satdep (0) ...
216s autopkgtest [19:29:18]: test run-unit-test: [-----------------------
216s BEGIN TEST bootstrap.R
217s 
217s R version 4.3.2 (2023-10-31) -- "Eye Holes"
217s Copyright (C) 2023 The R Foundation for Statistical Computing
217s Platform: aarch64-unknown-linux-gnu (64-bit)
217s 
217s R is free software and comes with ABSOLUTELY NO WARRANTY.
217s You are welcome to redistribute it under certain conditions.
217s Type 'license()' or 'licence()' for distribution details.
217s 
217s R is a collaborative project with many contributors.
217s Type 'contributors()' for more information and
217s 'citation()' on how to cite R or R packages in publications.
217s 
217s Type 'demo()' for some demos, 'help()' for on-line help, or
217s 'help.start()' for an HTML browser interface to help.
217s Type 'q()' to quit R.
217s 
217s > 
217s > if(require("RUnit", quietly=TRUE)) {
217s +   ## Run all the tests
217s +   wd <- getwd()
217s +   testsuite <- defineTestSuite("PCICt", dirs=wd, testFileRegexp = "^test_functions.R$", testFuncRegexp = "^PCICt.test.+")
217s +   PCICt.test.result <- runTestSuite(testsuite, useOwnErrorHandler=F)
217s +   printTextProtocol(PCICt.test.result)
217s + }
217s 
217s 
217s Executing test function PCICt.test.as.PCICt  ... Error in as.POSIXlt.character(x, tz, format, ...) : 
217s   character string is not in a standard unambiguous format
217s In addition: Warning messages:
217s 1: In RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) :
217s   RNGkind: Marsaglia-Multicarry has poor statistical properties
217s 2: In RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) :
217s   RNGkind: severe deviations from normality for Kinderman-Ramage + Marsaglia-Multicarry
217s Error in as.POSIXlt.character(x, tz, format, ...) : 
217s   character string is not in a standard unambiguous format
217s Error in missing(res) : 'missing' can only be used for arguments
217s Error in missing(res) : 'missing' can only be used for arguments
217s Error in as.POSIXlt.character(x, tz, format, ...) : 
217s   character string is not in a standard unambiguous format
217s  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.as.POSIXct  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.as.POSIXlt  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.c  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.cut  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.format  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.julian  ... Error in `-.PCICt`(test.365, test.greg) : 
217s   attr(e1, "cal") == attr(e2, "cal") is not TRUE
217s Error in `-.PCICt`(test.365, test.greg) : 
217s   attr(e1, "cal") == attr(e2, "cal") is not TRUE
217s Error in `[<-.PCICt`(`*tmp*`, 1:3, value = structure(c(1314144000, 1311292800,  : 
217s   class(value) == class(x) & attr(x, "cal") == attr(value, "cal") is not TRUE
217s  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.operators  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.pretty  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.range  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.round  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.seq  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.subset  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.summary  ...  done successfully.
217s 
217s 
217s 
217s Executing test function PCICt.test.trunc  ...  done successfully.
217s 
217s RUNIT TEST PROTOCOL -- Sat Mar 16 19:29:19 2024 
217s *********************************************** 
217s Number of test functions: 15 
217s Number of errors: 0 
217s Number of failures: 0 
217s 
217s  
217s 1 Test Suite : 
217s PCICt - 15 test functions, 0 errors, 0 failures
217s 
217s 
217s 
217s Details 
217s *************************** 
217s Test Suite: PCICt 
217s Test function regexp: ^PCICt.test.+ 
217s Test file regexp: ^test_functions.R$ 
217s Involved directory: 
217s /tmp/autopkgtest.iENfnK/autopkgtest_tmp 
217s --------------------------- 
217s Test file: /tmp/autopkgtest.iENfnK/autopkgtest_tmp/test_functions.R 
217s PCICt.test.as.PCICt: (102 checks) ... OK (0.04 seconds)
217s PCICt.test.as.POSIXct: (0 checks) ... OK (0 seconds)
217s PCICt.test.as.POSIXlt: (0 checks) ... OK (0 seconds)
217s PCICt.test.c: (0 checks) ... OK (0 seconds)
217s PCICt.test.cut: (0 checks) ... OK (0 seconds)
217s PCICt.test.format: (0 checks) ... OK (0 seconds)
217s PCICt.test.julian: (0 checks) ... OK (0 seconds)
217s PCICt.test.operators: (8 checks) ... OK (0 seconds)
217s PCICt.test.pretty: (0 checks) ... OK (0 seconds)
217s PCICt.test.range: (0 checks) ... OK (0 seconds)
217s PCICt.test.round: (12 checks) ... OK (0 seconds)
217s PCICt.test.seq: (6 checks) ... OK (0.01 seconds)
217s PCICt.test.subset: (5 checks) ... OK (0 seconds)
217s PCICt.test.summary: (0 checks) ... OK (0 seconds)
217s PCICt.test.trunc: (12 checks) ... OK (0 seconds)
217s > 
217s BEGIN TEST test_functions.R
217s 
217s R version 4.3.2 (2023-10-31) -- "Eye Holes"
217s Copyright (C) 2023 The R Foundation for Statistical Computing
217s Platform: aarch64-unknown-linux-gnu (64-bit)
217s 
217s R is free software and comes with ABSOLUTELY NO WARRANTY.
217s You are welcome to redistribute it under certain conditions.
217s Type 'license()' or 'licence()' for distribution details.
217s 
217s R is a collaborative project with many contributors.
217s Type 'contributors()' for more information and
217s 'citation()' on how to cite R or R packages in publications.
217s 
217s Type 'demo()' for some demos, 'help()' for on-line help, or
217s 'help.start()' for an HTML browser interface to help.
217s Type 'q()' to quit R.
217s 
217s > library(PCICt)
217s > library(RUnit)
217s > 
217s > test.values <- c("1850-01-01", "2012-04-01 00:10:00", "2012-02-28", "1599-01-01", "1582-10-04", "1582-10-03", "900-02-28", "900-03-01", "200-03-01", "1-01-01", "0-01-01")
217s > 
217s > ## Tests as.pcict functions
217s > PCICt.test.as.PCICt <- function() {
217s +   test.calendars <- c("360", "365", "gregorian", "proleptic_gregorian")
217s +   cal.360.only <- c("2011-02-30")
217s +   gregorian.not.365 <- c("2012-02-29")
217s +   gregorian.not.360 <- c("2011-01-31")
217s + 
217s +   ## Check that valid input produces valid output for all calendar types
217s +   for(cal in test.calendars) {
217s +     for(i in seq_along(test.values)) {
217s +       checkEquals(as.character(as.PCICt(test.values[i], cal=cal)), test.values[i])
217s +       
217s +       ## Check that as.PCICt.POSIXlt works as expected
217s +       checkEquals(as.character(as.PCICt(as.POSIXlt(test.values[i]), cal=cal)), test.values[i])
217s +       
217s +       ## Check that as.PCICt.POSIXct works as expected
217s +       ##checkEquals(as.character(as.PCICt(as.POSIXct(test.values[i]), cal=cal)), test.values[i])
217s +     }
217s +   }
217s + 
217s +   ## Check factor case
217s +   checkEquals(as.PCICt(as.factor(gregorian.not.365), cal="360"), as.PCICt(gregorian.not.365, cal="360"))
217s +   
217s +   ## Check that invalid input triggers errors
217s +   checkException(as.PCICt(cal.360.only, cal="365"))
217s +   checkException(as.PCICt(cal.360.only, cal="gregorian"))
217s + 
217s +   ## Should fail but doesn't; not sure how to hack it other than to pass in month lengths to the so-called "360" funcs.
217s +   ##checkException(as.PCICt(gregorian.not.365, cal="365"))
217s + 
217s +   checkException(as.PCICt(gregorian.not.360, cal="360"))
217s +   checkException(as.PCICt("your mom", cal="360"))
217s +   checkException(as.PCICt("your mom", cal="365"))
217s + 
217s +   ## Check that NAs are passed through properly
217s +   checkTrue(is.na(as.PCICt(NA, cal="360")))
217s +   checkTrue(is.na(as.PCICt(NA, cal="365")))
217s + 
217s +   ## Check numeric input...
217s +   checkEquals(as.PCICt(86400, origin="1961-01-01", cal="360"), as.PCICt("1961-01-02", cal="360"))
217s + 
217s +   ## Check several cases for the 360 sub-second string formatting
217s +   date.360 <- as.PCICt("2012-02-28 12:34:56.7", cal="360")
217s +   checkEquals(as.character(date.360, "%M:%OS1"), "34:56.7")
217s +   checkEquals(as.character(date.360, "%M:%OS2"), "34:56.70")
217s +   checkEquals(as.character(date.360, "%M:%OS6"), "34:56.700000")
217s +   checkEquals(as.character(date.360, "%M:%OS7"), "34:56.700000")
217s +   checkEquals(as.character(date.360, "%M:%OSx"), "34:56x")
217s + }
217s > 
217s > ## Tests subset operators
217s > PCICt.test.subset <- function() {
217s +   dat <- as.PCICt(test.values, cal="365")
217s +   dat2 <- dat[2:4]
217s +   dat3 <- dat
217s +   dat3[1:2] <- dat[2:3]
217s +   
217s +   ## Check that subset operator works as expected
217s +   checkEquals(as.character(dat[2:4]), as.character(dat)[2:4])
217s + 
217s +   ## Check that subset operator preserves attributes properly
217s +   checkEquals(attr(dat2, "cal"), attr(dat, "cal"))
217s +   checkEquals(attr(dat3, "cal"), attr(dat, "cal"))
217s + 
217s +   ## Check assignment
217s +   checkEquals(dat3[1:4], dat[c(2, 3, 3, 4)])
217s + 
217s +   ## Check exception handling
217s +   dat.360 <- as.PCICt(test.values, cal="360")
217s +   checkException(dat3[1:3] <- dat.360[2:4])
217s + }
217s > 
217s > ## Tests arithmetic operators (+, -)
217s > PCICt.test.operators <- function() {
217s +   test.365 <- as.PCICt(test.values, cal="365")
217s +   test.greg <- as.PCICt(test.values, cal="gregorian")
217s +   
217s +   ## Check edge cases for each calendar for addition (isn't February a great month?)
217s +   checkEquals(as.character(as.PCICt("2012-02-28", cal="365") + 86400), "2012-03-01")
217s +   checkEquals(as.character(as.PCICt("2011-02-28", cal="360") + 2 * 86400), "2011-02-30")
217s +   checkEquals(as.character(as.PCICt("2012-02-28", cal="gregorian") + 86400), "2012-02-29")
217s + 
217s +   ## FIXME: CHECK THAT SUBTRACTION GIVES A DIFFTIME OBJECT
217s +   checkException(test.365 - test.greg)
217s +   checkException(test.365 - test.greg)
217s +   
217s +   ## Check edge cases for each calendar for subtraction
217s +   checkEquals(as.numeric(as.PCICt("2012-03-01", cal="365") - as.PCICt("2012-02-28", cal="365"), units="secs"), as.numeric(as.difftime("24:00:00"), units="secs"))
217s +   checkEquals(as.numeric(as.PCICt("2011-03-01", cal="360") - as.PCICt("2011-02-30", cal="360"), units="secs"), as.numeric(as.difftime("24:00:00"), units="secs"))
217s +   checkEquals(as.numeric(as.PCICt("2012-03-01", cal="gregorian") - as.PCICt("2012-02-29", cal="gregorian"), units="secs"), as.numeric(as.difftime("24:00:00"), units="secs"))
217s + }
217s > 
217s > ## Tests the truncate function
217s > PCICt.test.trunc <- function() {
217s +   date.360 <- as.PCICt("2012-02-28 12:34:56.7", cal="360")
217s +   date.365 <- as.PCICt("2012-02-28 12:34:56.7", cal="365")
217s +   date.gregorian <- as.PCICt("2012-02-28 12:34:56.7", cal="gregorian")
217s + 
217s +   results <- c("2012-02-28 12:34:56", "2012-02-28 12:34:00", "2012-02-28 12:00:00", "2012-02-28")
217s +   round.to <- c("secs", "mins", "hours", "days")
217s +   
217s +   for(i in 1:length(results)) {
217s +     checkEquals(as.character(trunc(date.360, round.to[i])), results[i])
217s +     checkEquals(as.character(trunc(date.365, round.to[i])), results[i])
217s +     checkEquals(as.character(trunc(date.gregorian, round.to[i])), results[i])
217s +   }
217s + }
217s > 
217s > ## Tests the round function
217s > PCICt.test.round <- function() {
217s +   date.360 <- as.PCICt("2012-02-28 12:34:56.7", cal="360")
217s +   date.365 <- as.PCICt("2012-02-28 12:34:56.7", cal="365")
217s +   date.gregorian <- as.PCICt("2012-02-28 12:34:56.7", cal="gregorian")
217s + 
217s +   results <- c("2012-02-28 12:34:57", "2012-02-28 12:35:00", "2012-02-28 13:00:00")
217s +   results.days <- c("2012-02-29", "2012-03-01", "2012-02-29")
217s +   round.to <- c("secs", "mins", "hours")
217s +   
217s +   for(i in 1:length(results)) {
217s +     checkEquals(as.character(round(date.360, round.to[i])), results[i])
217s +     checkEquals(as.character(round(date.365, round.to[i])), results[i])
217s +     checkEquals(as.character(round(date.gregorian, round.to[i])), results[i])
217s +   }
217s +   checkEquals(as.character(round(date.360, "days")), results.days[1])
217s +   checkEquals(as.character(round(date.365, "days")), results.days[2])
217s +   checkEquals(as.character(round(date.gregorian, "days")), results.days[3])
217s + }
217s > 
217s > ## Tests the cut function
217s > PCICt.test.cut <- function() {
217s + }
217s > 
217s > PCICt.test.summary <- function() {
217s + }
217s > 
217s > PCICt.test.format <- function() {
217s + }
217s > 
217s > PCICt.test.as.POSIXlt <- function() {
217s + }
217s > 
217s > PCICt.test.as.POSIXct <- function() {
217s + }
217s > 
217s > PCICt.test.julian <- function() {
217s + }
217s > 
217s > PCICt.test.range <- function() {
217s + }
217s > 
217s > PCICt.test.pretty <- function() {
217s + }
217s > 
217s > PCICt.test.c <- function() {
217s + }
217s > 
217s > PCICt.test.seq <- function() {
217s +   ## Check that sequences work as expected
217s +   checkEquals(seq(as.PCICt("2011-02-30", cal="360"), as.PCICt("2012-04-01 00:10:00", cal="360"), by="years"), as.PCICt(c("2011-02-30", "2012-02-30"), cal="360"))
217s +   checkEquals(seq(as.PCICt("2011-02-28", cal="365"), as.PCICt("2012-04-01 00:10:00", cal="365"), by="years"), as.PCICt(c("2011-02-28", "2012-02-28"), cal="365"))
217s +   checkEquals(seq(as.PCICt("2011-02-28", cal="gregorian"), as.PCICt("2012-04-01 00:10:00", cal="gregorian"), by="years"), as.PCICt(c("2011-02-28", "2012-02-28"), cal="gregorian"))
217s + 
217s +   checkEquals(seq(as.PCICt("2011-02-30", cal="360"), as.PCICt("2011-03-03 00:10:00", cal="360"), by="days"), as.PCICt(c("2011-02-30", "2011-03-01", "2011-03-02", "2011-03-03"), cal="360"))
217s +   checkEquals(seq(as.PCICt("2012-02-28", cal="365"), as.PCICt("2012-03-03 00:10:00", cal="365"), by="days"), as.PCICt(c("2012-02-28", "2012-03-01", "2012-03-02", "2012-03-03"), cal="365"))
217s +   checkEquals(seq(as.PCICt("2012-02-28", cal="gregorian"), as.PCICt("2012-03-03 00:10:00", cal="gregorian"), by="days"), as.PCICt(c("2012-02-28", "2012-02-29", "2012-03-01", "2012-03-02", "2012-03-03"), cal="gregorian"))
217s + 
217s + }
217s > 
218s autopkgtest [19:29:20]: test run-unit-test: -----------------------]
218s run-unit-test        PASS
218s autopkgtest [19:29:20]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
218s autopkgtest [19:29:20]: test pkg-r-autopkgtest: preparing testbed
220s Reading package lists...
220s Building dependency tree...
220s Reading state information...
221s Starting pkgProblemResolver with broken count: 0
221s Starting 2 pkgProblemResolver with broken count: 0
221s Done
221s The following additional packages will be installed:
221s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
221s   dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
221s   gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
221s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
221s   libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0
221s   libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23
221s   libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0
221s   liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0
221s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev
221s   libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config
221s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
221s Suggested packages:
221s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
221s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
221s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
221s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
221s   libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic
221s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
221s   texlive-latex-recommended texlive-latex-extra texinfo
221s Recommended packages:
221s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools
221s The following NEW packages will be installed:
221s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
221s   cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu
221s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
221s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
221s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
221s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
221s   libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
221s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
221s   libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
221s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev
221s   libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest
221s   pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
222s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded.
222s Need to get 92.9 MB/92.9 MB of archives.
222s After this operation, 343 MB of additional disk space will be used.
222s Get:1 /tmp/autopkgtest.iENfnK/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B]
222s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
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222s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
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224s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
224s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
224s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
224s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
224s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
224s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
224s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
224s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
224s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
224s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
224s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
224s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
224s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
224s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
224s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
224s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
224s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
224s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
224s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
224s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
224s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
225s Fetched 92.9 MB in 3s (32.4 MB/s)
225s Selecting previously unselected package libc-dev-bin.
225s (Reading database ... 
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225s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
225s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
225s Selecting previously unselected package linux-libc-dev:arm64.
225s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ...
225s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
225s Selecting previously unselected package libcrypt-dev:arm64.
225s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
225s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
225s Selecting previously unselected package libtirpc-dev:arm64.
225s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ...
225s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
225s Selecting previously unselected package libnsl-dev:arm64.
225s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ...
225s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
225s Selecting previously unselected package rpcsvc-proto.
225s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
225s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
226s Selecting previously unselected package libc6-dev:arm64.
226s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ...
226s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
226s Selecting previously unselected package libisl23:arm64.
226s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ...
226s Unpacking libisl23:arm64 (0.26-3) ...
226s Selecting previously unselected package libmpc3:arm64.
226s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ...
226s Unpacking libmpc3:arm64 (1.3.1-1) ...
226s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
226s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
226s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
226s Selecting previously unselected package cpp-13.
226s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
226s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
226s Selecting previously unselected package cpp-aarch64-linux-gnu.
226s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
226s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
226s Selecting previously unselected package cpp.
226s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
226s Unpacking cpp (4:13.2.0-7ubuntu1) ...
226s Selecting previously unselected package libcc1-0:arm64.
226s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
226s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package libitm1:arm64.
226s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ...
226s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package libatomic1:arm64.
226s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
226s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package libasan8:arm64.
226s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ...
226s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package liblsan0:arm64.
226s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
226s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package libtsan2:arm64.
226s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
226s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
227s Selecting previously unselected package libubsan1:arm64.
227s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
227s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
227s Selecting previously unselected package libhwasan0:arm64.
227s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
227s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
227s Selecting previously unselected package libgcc-13-dev:arm64.
227s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
227s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
227s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
227s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
227s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
227s Selecting previously unselected package gcc-13.
227s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
227s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
227s Selecting previously unselected package gcc-aarch64-linux-gnu.
227s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
227s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
227s Selecting previously unselected package gcc.
227s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
227s Unpacking gcc (4:13.2.0-7ubuntu1) ...
227s Selecting previously unselected package libstdc++-13-dev:arm64.
227s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
227s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
227s Selecting previously unselected package g++-13-aarch64-linux-gnu.
227s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
227s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
228s Selecting previously unselected package g++-13.
228s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ...
228s Unpacking g++-13 (13.2.0-17ubuntu2) ...
228s Selecting previously unselected package g++-aarch64-linux-gnu.
228s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
228s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
228s Selecting previously unselected package g++.
228s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
228s Unpacking g++ (4:13.2.0-7ubuntu1) ...
228s Selecting previously unselected package build-essential.
228s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ...
228s Unpacking build-essential (12.10ubuntu1) ...
228s Selecting previously unselected package dctrl-tools.
228s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ...
228s Unpacking dctrl-tools (2.24-3build2) ...
228s Selecting previously unselected package libgfortran-13-dev:arm64.
228s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
228s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
228s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
228s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
228s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
228s Selecting previously unselected package gfortran-13.
228s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
228s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
228s Selecting previously unselected package gfortran-aarch64-linux-gnu.
228s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
228s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
228s Selecting previously unselected package gfortran.
228s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
228s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
228s Selecting previously unselected package icu-devtools.
228s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ...
228s Unpacking icu-devtools (74.2-1ubuntu1) ...
228s Selecting previously unselected package libblas-dev:arm64.
228s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ...
228s Unpacking libblas-dev:arm64 (3.12.0-3) ...
228s Selecting previously unselected package libbz2-dev:arm64.
228s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
228s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
228s Selecting previously unselected package libicu-dev:arm64.
228s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ...
228s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
229s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
229s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
229s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
229s Selecting previously unselected package libjpeg8-dev:arm64.
229s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
229s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
229s Selecting previously unselected package libjpeg-dev:arm64.
229s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
229s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
229s Selecting previously unselected package liblapack-dev:arm64.
229s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ...
229s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
229s Selecting previously unselected package libncurses-dev:arm64.
229s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
229s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
229s Selecting previously unselected package libpcre2-16-0:arm64.
229s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
229s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
229s Selecting previously unselected package libpcre2-32-0:arm64.
229s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
229s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
229s Selecting previously unselected package libpcre2-posix3:arm64.
229s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
229s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
229s Selecting previously unselected package libpcre2-dev:arm64.
229s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
229s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
229s Selecting previously unselected package libpkgconf3:arm64.
229s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ...
229s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
229s Selecting previously unselected package zlib1g-dev:arm64.
229s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
229s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
229s Selecting previously unselected package libpng-dev:arm64.
229s Preparing to unpack .../53-libpng-dev_1.6.43-1_arm64.deb ...
229s Unpacking libpng-dev:arm64 (1.6.43-1) ...
229s Selecting previously unselected package libreadline-dev:arm64.
229s Preparing to unpack .../54-libreadline-dev_8.2-3_arm64.deb ...
229s Unpacking libreadline-dev:arm64 (8.2-3) ...
229s Selecting previously unselected package pkgconf-bin.
229s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ...
229s Unpacking pkgconf-bin (1.8.1-2) ...
229s Selecting previously unselected package pkgconf:arm64.
229s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ...
229s Unpacking pkgconf:arm64 (1.8.1-2) ...
229s Selecting previously unselected package pkg-config:arm64.
229s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ...
229s Unpacking pkg-config:arm64 (1.8.1-2) ...
229s Selecting previously unselected package liblzma-dev:arm64.
229s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ...
229s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ...
229s Selecting previously unselected package r-base-dev.
229s Preparing to unpack .../59-r-base-dev_4.3.2-1build1_all.deb ...
229s Unpacking r-base-dev (4.3.2-1build1) ...
229s Selecting previously unselected package pkg-r-autopkgtest.
229s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
229s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
229s Selecting previously unselected package autopkgtest-satdep.
229s Preparing to unpack .../61-2-autopkgtest-satdep.deb ...
229s Unpacking autopkgtest-satdep (0) ...
229s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
229s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
229s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
229s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
229s Setting up libpkgconf3:arm64 (1.8.1-2) ...
229s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
229s Setting up libmpc3:arm64 (1.3.1-1) ...
229s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
229s Setting up icu-devtools (74.2-1ubuntu1) ...
229s Setting up pkgconf-bin (1.8.1-2) ...
229s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
229s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
230s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
230s Setting up libnsl-dev:arm64 (1.3.0-3) ...
230s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
230s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
230s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
230s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
230s Setting up libisl23:arm64 (0.26-3) ...
230s Setting up libc-dev-bin (2.39-0ubuntu2) ...
230s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
230s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
230s Setting up libblas-dev:arm64 (3.12.0-3) ...
230s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
230s Setting up dctrl-tools (2.24-3build2) ...
230s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
230s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
230s Setting up pkgconf:arm64 (1.8.1-2) ...
230s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
230s Setting up liblapack-dev:arm64 (3.12.0-3) ...
230s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
230s Setting up pkg-config:arm64 (1.8.1-2) ...
230s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
230s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
230s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
230s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
230s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
230s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
230s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
230s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
230s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
230s Setting up cpp-13 (13.2.0-17ubuntu2) ...
230s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
230s Setting up libreadline-dev:arm64 (8.2-3) ...
230s Setting up gcc-13 (13.2.0-17ubuntu2) ...
230s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
230s Setting up cpp (4:13.2.0-7ubuntu1) ...
230s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
230s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
230s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
230s Setting up g++-13 (13.2.0-17ubuntu2) ...
230s Setting up libpng-dev:arm64 (1.6.43-1) ...
230s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
230s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
230s Setting up gcc (4:13.2.0-7ubuntu1) ...
230s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
230s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
230s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
230s Setting up gfortran (4:13.2.0-7ubuntu1) ...
230s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
230s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
230s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
230s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
230s Setting up g++ (4:13.2.0-7ubuntu1) ...
230s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
230s Setting up build-essential (12.10ubuntu1) ...
230s Setting up r-base-dev (4.3.2-1build1) ...
230s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
230s Setting up autopkgtest-satdep (0) ...
230s Processing triggers for man-db (2.12.0-3) ...
230s Processing triggers for install-info (7.1-3) ...
231s Processing triggers for libc-bin (2.39-0ubuntu2) ...
233s (Reading database ... 79967 files and directories currently installed.)
233s Removing autopkgtest-satdep (0) ...
234s autopkgtest [19:29:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
234s autopkgtest [19:29:36]: test pkg-r-autopkgtest: [-----------------------
235s Test: Try to load the R library PCICt
235s 
235s R version 4.3.2 (2023-10-31) -- "Eye Holes"
235s Copyright (C) 2023 The R Foundation for Statistical Computing
235s Platform: aarch64-unknown-linux-gnu (64-bit)
235s 
235s R is free software and comes with ABSOLUTELY NO WARRANTY.
235s You are welcome to redistribute it under certain conditions.
235s Type 'license()' or 'licence()' for distribution details.
235s 
235s R is a collaborative project with many contributors.
235s Type 'contributors()' for more information and
235s 'citation()' on how to cite R or R packages in publications.
235s 
235s Type 'demo()' for some demos, 'help()' for on-line help, or
235s 'help.start()' for an HTML browser interface to help.
235s Type 'q()' to quit R.
235s 
235s > library('PCICt')
235s > 
235s > 
235s Other tests are currently unsupported!
235s They will be progressively added.
235s autopkgtest [19:29:37]: test pkg-r-autopkgtest: -----------------------]
236s autopkgtest [19:29:38]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
236s pkg-r-autopkgtest    PASS
236s autopkgtest [19:29:38]: @@@@@@@@@@@@@@@@@@@@ summary
236s run-unit-test        PASS
236s pkg-r-autopkgtest    PASS
247s Creating nova instance adt-noble-arm64-r-cran-pcict-20240316-192542-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...