0s autopkgtest [19:25:36]: starting date and time: 2024-03-16 19:25:36+0000
  0s autopkgtest [19:25:36]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [19:25:36]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e3qwsu26/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-pcapp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-20.secgroup --name adt-noble-arm64-r-cran-pcapp-20240316-192536-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
129s autopkgtest [19:27:45]: testbed dpkg architecture: arm64
130s autopkgtest [19:27:46]: testbed apt version: 2.7.12
130s autopkgtest [19:27:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
130s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
131s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
131s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
131s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3657 kB]
131s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
131s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
131s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
131s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
131s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4013 kB]
131s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
131s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB]
131s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
133s Fetched 9065 kB in 2s (4984 kB/s)
133s Reading package lists...
136s Reading package lists...
136s Building dependency tree...
136s Reading state information...
137s Calculating upgrade...
137s The following packages will be REMOVED:
137s   libglib2.0-0 libssl3
137s The following NEW packages will be installed:
137s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
137s The following packages have been kept back:
137s   curl
137s The following packages will be upgraded:
137s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
137s   ubuntu-minimal ubuntu-standard
137s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
137s Need to get 4613 kB of archives.
137s After this operation, 211 kB of additional disk space will be used.
137s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
138s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
138s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
138s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
138s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
138s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
138s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
138s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
138s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
138s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
138s Fetched 4613 kB in 1s (6803 kB/s)
139s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
139s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
139s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
139s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
139s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
139s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
139s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
139s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
139s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
139s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
139s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
139s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
139s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
139s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
139s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
139s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
139s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
139s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
139s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
139s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
139s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
139s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
139s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
139s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
139s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
139s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
139s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
139s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
139s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
139s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
139s  fwupd depends on libglib2.0-0 (>= 2.79.0).
139s  bolt depends on libglib2.0-0 (>= 2.56.0).
139s 
139s (Reading database ... 
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139s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
139s Selecting previously unselected package libglib2.0-0t64:arm64.
139s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
139s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
139s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
139s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
139s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
139s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
139s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
139s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
139s  wget depends on libssl3 (>= 3.0.0).
139s  u-boot-tools depends on libssl3 (>= 3.0.0).
139s  tnftp depends on libssl3 (>= 3.0.0).
139s  tcpdump depends on libssl3 (>= 3.0.0).
139s  systemd-resolved depends on libssl3 (>= 3.0.0).
139s  systemd depends on libssl3 (>= 3.0.0).
139s  sudo depends on libssl3 (>= 3.0.0).
139s  sbsigntool depends on libssl3 (>= 3.0.0).
139s  rsync depends on libssl3 (>= 3.0.0).
139s  python3-cryptography depends on libssl3 (>= 3.0.0).
139s  openssh-server depends on libssl3 (>= 3.0.10).
139s  openssh-client depends on libssl3 (>= 3.0.10).
139s  mtd-utils depends on libssl3 (>= 3.0.0).
139s  mokutil depends on libssl3 (>= 3.0.0).
139s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
139s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
139s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
139s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
139s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
139s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
139s  libnvme1 depends on libssl3 (>= 3.0.0).
139s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
139s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
139s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
139s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
139s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
139s  kmod depends on libssl3 (>= 3.0.0).
139s  dhcpcd-base depends on libssl3 (>= 3.0.0).
139s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
139s 
139s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
139s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
139s Selecting previously unselected package libssl3t64:arm64.
139s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
139s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
139s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
139s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
139s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
139s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
139s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
139s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
139s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
140s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
140s Unpacking ubuntu-minimal (1.536) over (1.535) ...
140s Selecting previously unselected package xdg-user-dirs.
140s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
140s Unpacking xdg-user-dirs (0.18-1) ...
140s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
140s Unpacking ubuntu-standard (1.536) over (1.535) ...
140s Setting up ubuntu-minimal (1.536) ...
140s Setting up xdg-user-dirs (0.18-1) ...
140s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
140s Setting up libtirpc-common (1.3.4+ds-1.1) ...
140s Setting up ubuntu-standard (1.536) ...
140s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
140s No schema files found: doing nothing.
140s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
140s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
140s Setting up openssl (3.0.13-0ubuntu1) ...
140s Setting up readline-common (8.2-3.1) ...
140s Processing triggers for man-db (2.12.0-3) ...
140s Processing triggers for install-info (7.1-3) ...
140s Processing triggers for libc-bin (2.39-0ubuntu2) ...
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
142s sh: Attempting to set up Debian/Ubuntu apt sources automatically
142s sh: Distribution appears to be Ubuntu
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
144s eatmydata is already the newest version (131-1).
144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s dbus is already the newest version (1.14.10-4ubuntu1).
144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s rng-tools-debian is already the newest version (2.4).
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s The following packages will be REMOVED:
146s   cloud-init* python3-configobj* python3-debconf*
147s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
147s After this operation, 3252 kB disk space will be freed.
147s (Reading database ... 
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(Reading database ... 74774 files and directories currently installed.)
147s Removing cloud-init (24.1.1-0ubuntu1) ...
147s Removing python3-configobj (5.0.8-3) ...
147s Removing python3-debconf (1.5.86) ...
147s Processing triggers for man-db (2.12.0-3) ...
148s (Reading database ... 
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(Reading database ... 74385 files and directories currently installed.)
148s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
148s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
148s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
148s invoke-rc.d: policy-rc.d denied execution of try-restart.
149s Reading package lists...
149s Building dependency tree...
149s Reading state information...
149s linux-generic is already the newest version (6.8.0-11.11+1).
149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
150s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
150s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
150s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
152s Reading package lists...
152s Reading package lists...
152s Building dependency tree...
152s Reading state information...
153s Calculating upgrade...
153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
153s Reading package lists...
153s Building dependency tree...
153s Reading state information...
154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s autopkgtest [19:28:10]: rebooting testbed after setup commands that affected boot
181s autopkgtest [19:28:37]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
184s autopkgtest [19:28:40]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-pcapp
186s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-pcapp 2.0-4-1 (dsc) [2100 B]
186s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-pcapp 2.0-4-1 (tar) [199 kB]
186s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-pcapp 2.0-4-1 (diff) [3568 B]
186s gpgv: Signature made Thu Jan 18 12:36:55 2024 UTC
186s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
186s gpgv:                issuer "tille@debian.org"
186s gpgv: Can't check signature: No public key
186s dpkg-source: warning: cannot verify inline signature for ./r-cran-pcapp_2.0-4-1.dsc: no acceptable signature found
186s autopkgtest [19:28:42]: testing package r-cran-pcapp version 2.0-4-1
187s autopkgtest [19:28:43]: build not needed
188s autopkgtest [19:28:44]: test run-unit-test: preparing testbed
189s Reading package lists...
189s Building dependency tree...
189s Reading state information...
190s Starting pkgProblemResolver with broken count: 0
190s Starting 2 pkgProblemResolver with broken count: 0
190s Done
190s The following additional packages will be installed:
190s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
190s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
190s   libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
190s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
190s   libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
190s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
190s   libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-deoptimr
190s   r-cran-mvtnorm r-cran-pcapp r-cran-robustbase unzip x11-common xdg-utils zip
190s Suggested packages:
190s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
190s Recommended packages:
190s   r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
190s   libx11-protocol-perl x11-utils x11-xserver-utils
191s The following NEW packages will be installed:
191s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
191s   fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1
191s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0
191s   libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0
191s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
191s   libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
191s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6
191s   r-base-core r-cran-deoptimr r-cran-mvtnorm r-cran-pcapp r-cran-robustbase
191s   unzip x11-common xdg-utils zip
191s 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded.
191s Need to get 40.8 MB/40.8 MB of archives.
191s After this operation, 80.8 MB of additional disk space will be used.
191s Get:1 /tmp/autopkgtest.nLKJvP/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B]
191s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
191s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
191s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
191s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
191s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
191s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
191s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
191s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
191s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
191s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
191s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
191s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
191s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
191s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
191s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
191s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
191s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
191s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
191s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
191s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
191s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
191s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
192s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
192s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
192s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
192s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
192s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
192s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
192s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
192s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
192s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
192s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
192s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
192s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
192s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
192s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
192s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
192s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
192s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
192s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
192s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
192s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
192s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
192s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
192s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deoptimr all 1.1-3-1 [74.4 kB]
192s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mvtnorm arm64 1.2-4-1 [723 kB]
192s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pcapp arm64 2.0-4-1 [363 kB]
192s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-robustbase arm64 0.99-2-1 [3020 kB]
193s Preconfiguring packages ...
193s Fetched 40.8 MB in 2s (21.8 MB/s)
193s Selecting previously unselected package fonts-dejavu-mono.
193s (Reading database ... 
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193s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
193s Unpacking fonts-dejavu-mono (2.37-8) ...
193s Selecting previously unselected package fonts-dejavu-core.
193s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
193s Unpacking fonts-dejavu-core (2.37-8) ...
193s Selecting previously unselected package fontconfig-config.
193s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
194s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
194s Selecting previously unselected package libfontconfig1:arm64.
194s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
194s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
194s Selecting previously unselected package fontconfig.
194s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
194s Unpacking fontconfig (2.15.0-1ubuntu1) ...
194s Selecting previously unselected package libblas3:arm64.
194s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ...
194s Unpacking libblas3:arm64 (3.12.0-3) ...
194s Selecting previously unselected package libpixman-1-0:arm64.
194s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ...
194s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
194s Selecting previously unselected package libxcb-render0:arm64.
194s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ...
194s Unpacking libxcb-render0:arm64 (1.15-1) ...
194s Selecting previously unselected package libxcb-shm0:arm64.
194s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ...
194s Unpacking libxcb-shm0:arm64 (1.15-1) ...
194s Selecting previously unselected package libxrender1:arm64.
194s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
194s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
194s Selecting previously unselected package libcairo2:arm64.
194s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ...
194s Unpacking libcairo2:arm64 (1.18.0-1) ...
194s Selecting previously unselected package libdatrie1:arm64.
194s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ...
194s Unpacking libdatrie1:arm64 (0.2.13-3) ...
194s Selecting previously unselected package libdeflate0:arm64.
194s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ...
194s Unpacking libdeflate0:arm64 (1.19-1) ...
194s Selecting previously unselected package libgfortran5:arm64.
194s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
194s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
194s Selecting previously unselected package libgomp1:arm64.
194s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
194s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
194s Selecting previously unselected package libgraphite2-3:arm64.
194s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ...
194s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
194s Selecting previously unselected package libharfbuzz0b:arm64.
194s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ...
194s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
194s Selecting previously unselected package x11-common.
194s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ...
194s Unpacking x11-common (1:7.7+23ubuntu2) ...
194s Selecting previously unselected package libice6:arm64.
194s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ...
194s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
194s Selecting previously unselected package libjpeg-turbo8:arm64.
194s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
194s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
194s Selecting previously unselected package libjpeg8:arm64.
194s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ...
194s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
194s Selecting previously unselected package liblapack3:arm64.
194s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ...
194s Unpacking liblapack3:arm64 (3.12.0-3) ...
194s Selecting previously unselected package liblerc4:arm64.
194s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
194s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
194s Selecting previously unselected package libthai-data.
194s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ...
194s Unpacking libthai-data (0.1.29-2) ...
194s Selecting previously unselected package libthai0:arm64.
194s Preparing to unpack .../24-libthai0_0.1.29-2_arm64.deb ...
194s Unpacking libthai0:arm64 (0.1.29-2) ...
194s Selecting previously unselected package libpango-1.0-0:arm64.
194s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
194s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
194s Selecting previously unselected package libpangoft2-1.0-0:arm64.
194s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
194s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
194s Selecting previously unselected package libpangocairo-1.0-0:arm64.
194s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
194s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
194s Selecting previously unselected package libpaper1:arm64.
194s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ...
194s Unpacking libpaper1:arm64 (1.1.29) ...
194s Selecting previously unselected package libpaper-utils.
194s Preparing to unpack .../29-libpaper-utils_1.1.29_arm64.deb ...
194s Unpacking libpaper-utils (1.1.29) ...
195s Selecting previously unselected package libsharpyuv0:arm64.
195s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ...
195s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
195s Selecting previously unselected package libsm6:arm64.
195s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ...
195s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
195s Selecting previously unselected package libtcl8.6:arm64.
195s Preparing to unpack .../32-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
195s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
195s Selecting previously unselected package libjbig0:arm64.
195s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
195s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
195s Selecting previously unselected package libwebp7:arm64.
195s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ...
195s Unpacking libwebp7:arm64 (1.3.2-0.4) ...
195s Selecting previously unselected package libtiff6:arm64.
195s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
195s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
195s Selecting previously unselected package libxft2:arm64.
195s Preparing to unpack .../36-libxft2_2.3.6-1_arm64.deb ...
195s Unpacking libxft2:arm64 (2.3.6-1) ...
195s Selecting previously unselected package libxss1:arm64.
195s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build2_arm64.deb ...
195s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
195s Selecting previously unselected package libtk8.6:arm64.
195s Preparing to unpack .../38-libtk8.6_8.6.13-2_arm64.deb ...
195s Unpacking libtk8.6:arm64 (8.6.13-2) ...
195s Selecting previously unselected package libxt6:arm64.
195s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ...
195s Unpacking libxt6:arm64 (1:1.2.1-1.1) ...
195s Selecting previously unselected package zip.
195s Preparing to unpack .../40-zip_3.0-13_arm64.deb ...
195s Unpacking zip (3.0-13) ...
195s Selecting previously unselected package unzip.
195s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ...
195s Unpacking unzip (6.0-28ubuntu3) ...
195s Selecting previously unselected package xdg-utils.
195s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
195s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
195s Selecting previously unselected package r-base-core.
195s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ...
195s Unpacking r-base-core (4.3.2-1build1) ...
195s Selecting previously unselected package r-cran-deoptimr.
195s Preparing to unpack .../44-r-cran-deoptimr_1.1-3-1_all.deb ...
196s Unpacking r-cran-deoptimr (1.1-3-1) ...
196s Selecting previously unselected package r-cran-mvtnorm.
196s Preparing to unpack .../45-r-cran-mvtnorm_1.2-4-1_arm64.deb ...
196s Unpacking r-cran-mvtnorm (1.2-4-1) ...
196s Selecting previously unselected package r-cran-pcapp.
196s Preparing to unpack .../46-r-cran-pcapp_2.0-4-1_arm64.deb ...
196s Unpacking r-cran-pcapp (2.0-4-1) ...
196s Selecting previously unselected package r-cran-robustbase.
196s Preparing to unpack .../47-r-cran-robustbase_0.99-2-1_arm64.deb ...
196s Unpacking r-cran-robustbase (0.99-2-1) ...
196s Selecting previously unselected package autopkgtest-satdep.
196s Preparing to unpack .../48-1-autopkgtest-satdep.deb ...
196s Unpacking autopkgtest-satdep (0) ...
196s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
196s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
196s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
196s Setting up libpaper1:arm64 (1.1.29) ...
196s 
196s Creating config file /etc/papersize with new version
196s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
196s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
196s Setting up libdatrie1:arm64 (0.2.13-3) ...
196s Setting up libxcb-render0:arm64 (1.15-1) ...
196s Setting up unzip (6.0-28ubuntu3) ...
196s Setting up x11-common (1:7.7+23ubuntu2) ...
197s Setting up libdeflate0:arm64 (1.19-1) ...
197s Setting up libxcb-shm0:arm64 (1.15-1) ...
197s Setting up libpaper-utils (1.1.29) ...
197s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
197s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
197s Setting up zip (3.0-13) ...
197s Setting up libblas3:arm64 (3.12.0-3) ...
197s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
197s Setting up fonts-dejavu-mono (2.37-8) ...
197s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
197s Setting up fonts-dejavu-core (2.37-8) ...
197s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
197s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
197s Setting up libwebp7:arm64 (1.3.2-0.4) ...
197s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
197s Setting up libthai-data (0.1.29-2) ...
197s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
197s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
197s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
197s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
197s Setting up libice6:arm64 (2:1.0.10-1build2) ...
197s Setting up liblapack3:arm64 (3.12.0-3) ...
197s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
197s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
197s Setting up libthai0:arm64 (0.1.29-2) ...
197s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
197s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
197s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
197s Setting up fontconfig (2.15.0-1ubuntu1) ...
199s Regenerating fonts cache... done.
199s Setting up libxft2:arm64 (2.3.6-1) ...
199s Setting up libtk8.6:arm64 (8.6.13-2) ...
199s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
199s Setting up libcairo2:arm64 (1.18.0-1) ...
199s Setting up libxt6:arm64 (1:1.2.1-1.1) ...
199s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
199s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
199s Setting up r-base-core (4.3.2-1build1) ...
199s 
199s Creating config file /etc/R/Renviron with new version
199s Setting up r-cran-deoptimr (1.1-3-1) ...
199s Setting up r-cran-mvtnorm (1.2-4-1) ...
199s Setting up r-cran-robustbase (0.99-2-1) ...
199s Setting up r-cran-pcapp (2.0-4-1) ...
199s Setting up autopkgtest-satdep (0) ...
199s Processing triggers for man-db (2.12.0-3) ...
200s Processing triggers for install-info (7.1-3) ...
200s Processing triggers for libc-bin (2.39-0ubuntu2) ...
205s (Reading database ... 76527 files and directories currently installed.)
205s Removing autopkgtest-satdep (0) ...
205s autopkgtest [19:29:01]: test run-unit-test: [-----------------------
206s BEGIN TEST tpcapp.R
206s 
206s R version 4.3.2 (2023-10-31) -- "Eye Holes"
206s Copyright (C) 2023 The R Foundation for Statistical Computing
206s Platform: aarch64-unknown-linux-gnu (64-bit)
206s 
206s R is free software and comes with ABSOLUTELY NO WARRANTY.
206s You are welcome to redistribute it under certain conditions.
206s Type 'license()' or 'licence()' for distribution details.
206s 
206s R is a collaborative project with many contributors.
206s Type 'contributors()' for more information and
206s 'citation()' on how to cite R or R packages in publications.
206s 
206s Type 'demo()' for some demos, 'help()' for on-line help, or
206s 'help.start()' for an HTML browser interface to help.
206s Type 'q()' to quit R.
206s 
206s > ## this will render the output independent from the version of the package
206s > suppressPackageStartupMessages(library(pcaPP))
206s > 
206s > ##  Sparse loadings
206s > set.seed (0)
206s > ##x <- data.Zou()
206s > data(iris)
206s > x <- iris[, 1:4]
206s > 
206s > l1median_NM (x)$par
206s [1] 5.931944 2.913282 4.215406 1.364975
206s > l1median_CG (x)$par
206s [1] 5.932216 2.912279 4.215837 1.364750
206s > l1median_BFGS (x)$par
206s [1] 5.932216 2.912279 4.215837 1.364750
206s > l1median_NLM (x)$par
206s [1] 5.932216 2.912279 4.215837 1.364750
206s > l1median_HoCr (x)$par
206s [1] 5.932216 2.912279 4.215837 1.364750
206s > l1median_VaZh (x)$par
206s [1] 5.932216 2.912279 4.215837 1.364750
206s > 
206s > # compare with coordinate-wise median:
206s > apply(x,2,median)
206s Sepal.Length  Sepal.Width Petal.Length  Petal.Width 
206s         5.80         3.00         4.35         1.30 
206s > 
206s > pc <- PCAgrid(x)
206s > pc
206s Call:
206s PCAgrid(x = x)
206s 
206s Standard deviations:
206s [1] 2.3555356 0.9095565
206s 
206s  4  variables and  150 observations.
206s > summary(pc)
206s Importance of components:
206s                             [,1]      [,2]
206s Standard deviation     2.3555356 0.9095565
206s Proportion of Variance 0.8702457 0.1297543
206s Cumulative Proportion  0.8702457 1.0000000
206s > pc$loadings
206s 
206s Loadings:
206s              Comp.1 Comp.2
206s Sepal.Length  0.589 -0.618
206s Sepal.Width          0.174
206s Petal.Length  0.598  0.749
206s Petal.Width   0.543 -0.163
206s 
206s                Comp.1 Comp.2
206s SS loadings      1.00   1.00
206s Proportion Var   0.25   0.25
206s Cumulative Var   0.25   0.50
206s > pc$scores
206s              Comp.1       Comp.2
206s   [1,] -2.791519460 -1.304428269
206s   [2,] -2.921720995 -1.267984502
206s   [3,] -3.094390048 -1.184566289
206s   [4,] -3.036232432 -0.990326562
206s   [5,] -2.847966568 -1.225246155
206s   [6,] -2.316930680 -1.227763426
206s   [7,] -3.034282033 -1.029294612
206s   [8,] -2.793136680 -1.185134557
206s   [9,] -3.218791382 -0.976577184
206s  [10,] -2.913781498 -1.159347616
206s  [11,] -2.550040927 -1.379942552
206s  [12,] -2.851201009 -0.986658731
206s  [13,] -3.034948391 -1.189945935
206s  [14,] -3.508870813 -1.105959455
206s  [15,] -2.486269684 -1.799588594
206s  [16,] -2.247359234 -1.475864129
206s  [17,] -2.556030025 -1.527547488
206s  [18,] -2.737211646 -1.320701930
206s  [19,] -2.196952220 -1.414201690
206s  [20,] -2.670019387 -1.193504288
206s  [21,] -2.437908677 -1.282302147
206s  [22,] -2.618184048 -1.227195159
206s  [23,] -3.322744244 -1.277970595
206s  [24,] -2.454216458 -1.163245624
206s  [25,] -2.671876500 -0.761820684
206s  [26,] -2.743251740 -1.179857376
206s  [27,] -2.624746217 -1.142735864
206s  [28,] -2.672825041 -1.291247159
206s  [29,] -2.735072351 -1.383610383
206s  [30,] -2.915065539 -0.959728243
206s  [31,] -2.858618431 -1.038910357
206s  [32,] -2.448842723 -1.464741501
206s  [33,] -2.712298010 -1.170470245
206s  [34,] -2.538533811 -1.429567429
206s  [35,] -2.859473685 -1.175621278
206s  [36,] -2.977406137 -1.444807021
206s  [37,] -2.615615966 -1.626433906
206s  [38,] -2.961193964 -1.147207588
206s  [39,] -3.276093744 -1.034105991
206s  [40,] -2.734217097 -1.246899462
206s  [41,] -2.855906065 -1.333883041
206s  [42,] -3.180173667 -1.234065019
206s  [43,] -3.271148796 -0.999271573
206s  [44,] -2.513658115 -1.157865978
206s  [45,] -2.376612229 -0.909993888
206s  [46,] -2.926332764 -1.222493258
206s  [47,] -2.664552365 -1.102284611
206s  [48,] -3.093534795 -1.047855368
206s  [49,] -2.608960510 -1.318177647
206s  [50,] -2.855383990 -1.277497781
206s  [51,]  0.944798547 -0.252278522
206s  [52,]  0.526039193 -0.047854782
206s  [53,]  1.057263977 -0.074312455
206s  [54,] -0.433979126  0.009091732
206s  [55,]  0.634843715 -0.104342507
206s  [56,] -0.004903408  0.347378043
206s  [57,]  0.643449570  0.164945702
206s  [58,] -1.366371442 -0.078702751
206s  [59,]  0.587620145 -0.116142881
206s  [60,] -0.606315000  0.172835607
206s  [61,] -1.197792083 -0.060244461
206s  [62,]  0.047171823  0.001297281
206s  [63,] -0.304777128 -0.268329019
206s  [64,]  0.407104882  0.251354000
206s  [65,] -0.599324044 -0.247953982
206s  [66,]  0.586242816 -0.309239061
206s  [67,]  0.049737584  0.411430044
206s  [68,] -0.350479086  0.017232851
206s  [69,]  0.383475287 -0.098497059
206s  [70,] -0.538505058 -0.060237448
206s  [71,]  0.573689229  0.436986807
206s  [72,] -0.068099260 -0.274411656
206s  [73,]  0.688911637  0.191773724
206s  [74,]  0.296016781  0.266484114
206s  [75,]  0.290456471 -0.217451116
206s  [76,]  0.524850760 -0.264891364
206s  [77,]  0.876844322 -0.123471530
206s  [78,]  1.105342801  0.074198839
206s  [79,]  0.282943440  0.146953213
206s  [80,] -0.770520160 -0.388095545
206s  [81,] -0.659671951 -0.090835767
206s  [82,] -0.773754601 -0.149508121
206s  [83,] -0.361413131 -0.165206503
206s  [84,]  0.690955323  0.545521228
206s  [85,] -0.068101581  0.534959854
206s  [86,]  0.349613624  0.217765596
206s  [87,]  0.819875139 -0.100674676
206s  [88,]  0.276476880 -0.185243448
206s  [89,] -0.297977388  0.144193304
206s  [90,] -0.429034177  0.043926150
206s  [91,] -0.241770172  0.377401082
206s  [92,]  0.349802520  0.193825194
206s  [93,] -0.304110769 -0.107677696
206s  [94,] -1.309924333 -0.157884865
206s  [95,] -0.245619974  0.166887693
206s  [96,] -0.233590783  0.173648076
206s  [97,] -0.181755443  0.139957206
206s  [98,]  0.172617306 -0.093921306
206s  [99,] -1.371076498 -0.425927061
206s [100,] -0.244002754  0.047593981
206s [101,]  1.909292764  0.992780951
206s [102,]  0.736039599  0.620230054
206s [103,]  2.096225912  0.436558712
206s [104,]  1.280148828  0.737243684
206s [105,]  1.737241394  0.715928467
206s [106,]  2.809247679  0.652356294
206s [107,] -0.266446237  0.724151014
206s [108,]  2.287768508  0.644216739
206s [109,]  1.625486934  0.570407258
206s [110,]  2.506761266  0.564094445
206s [111,]  1.215146861  0.258688099
206s [112,]  1.209106767  0.399532653
206s [113,]  1.680367819  0.322069366
206s [114,]  0.666708045  0.555940865
206s [115,]  1.010051141  0.556278956
206s [116,]  1.438700391  0.421524051
206s [117,]  1.340685631  0.556185066
206s [118,]  3.002029704  0.788601413
206s [119,]  3.146217501  0.713213277
206s [120,]  0.564510303  0.399762829
206s [121,]  1.972397649  0.412483586
206s [122,]  0.555431049  0.595011381
206s [123,]  2.868689336  0.646976648
206s [124,]  0.856780025  0.177787157
206s [125,]  1.748415331  0.585977929
206s [126,]  2.056941838  0.533395224
206s [127,]  0.740558081  0.182023256
206s [128,]  0.746358283  0.353568595
206s [129,]  1.499519377  0.609240585
206s [130,]  1.823831591  0.381216098
206s [131,]  2.278973757  0.398868932
206s [132,]  2.831928733  0.472780879
206s [133,]  1.553827190  0.592966924
206s [134,]  0.815878732  0.393917382
206s [135,]  0.937660987  0.873616514
206s [136,]  2.677908707  0.183313988
206s [137,]  1.618358079  0.726687759
206s [138,]  1.284238522  0.635367181
206s [139,]  0.627663864  0.340387484
206s [140,]  1.681985039  0.202775654
206s [141,]  1.846618987  0.427376511
206s [142,]  1.611276157 -0.054609716
206s [143,]  0.736039599  0.620230054
206s [144,]  2.033027739  0.624140523
206s [145,]  1.965646585  0.520883283
206s [146,]  1.550739354  0.126448902
206s [147,]  0.965917727  0.201625094
206s [148,]  1.269976749  0.298799697
206s [149,]  1.385581011  0.654834295
206s [150,]  0.748068790  0.626990436
206s > 
206s autopkgtest [19:29:02]: test run-unit-test: -----------------------]
207s run-unit-test        PASS
207s autopkgtest [19:29:03]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
207s autopkgtest [19:29:03]: test pkg-r-autopkgtest: preparing testbed
209s Reading package lists...
209s Building dependency tree...
209s Reading state information...
209s Starting pkgProblemResolver with broken count: 0
209s Starting 2 pkgProblemResolver with broken count: 0
209s Done
210s The following additional packages will be installed:
210s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
210s   dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
210s   gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
210s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
210s   libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0
210s   libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23
210s   libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0
210s   liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0
210s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev
210s   libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config
210s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
210s Suggested packages:
210s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
210s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
210s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
210s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
210s   libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic
210s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
210s   texlive-latex-recommended texlive-latex-extra texinfo
210s Recommended packages:
210s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools
210s The following NEW packages will be installed:
210s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
210s   cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu
210s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
210s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
210s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
210s   libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev
210s   libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
210s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
210s   libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
210s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev
210s   libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest
210s   pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev
210s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded.
210s Need to get 92.9 MB/92.9 MB of archives.
210s After this operation, 343 MB of additional disk space will be used.
210s Get:1 /tmp/autopkgtest.nLKJvP/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B]
210s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
210s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
211s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
211s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
211s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
211s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
211s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
211s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
211s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
211s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
211s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
211s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
211s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
211s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
211s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
211s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
211s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
211s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
211s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
211s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
211s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
211s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
211s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
212s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
212s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
212s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
212s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
212s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
212s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
212s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
212s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
212s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
212s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
212s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
212s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
213s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
213s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
213s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
213s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
213s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
213s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
213s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
213s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
213s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
213s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
213s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
213s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
213s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
213s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
213s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
213s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
213s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
213s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
213s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
213s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
213s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
213s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
213s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
213s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
213s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
213s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
214s Fetched 92.9 MB in 3s (32.4 MB/s)
214s Selecting previously unselected package libc-dev-bin.
214s (Reading database ... 
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(Reading database ... 76527 files and directories currently installed.)
214s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
214s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
214s Selecting previously unselected package linux-libc-dev:arm64.
214s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ...
214s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
214s Selecting previously unselected package libcrypt-dev:arm64.
214s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
214s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
214s Selecting previously unselected package libtirpc-dev:arm64.
214s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ...
214s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
214s Selecting previously unselected package libnsl-dev:arm64.
214s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ...
214s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
214s Selecting previously unselected package rpcsvc-proto.
214s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
214s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
214s Selecting previously unselected package libc6-dev:arm64.
214s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ...
214s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
214s Selecting previously unselected package libisl23:arm64.
214s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ...
214s Unpacking libisl23:arm64 (0.26-3) ...
214s Selecting previously unselected package libmpc3:arm64.
214s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ...
214s Unpacking libmpc3:arm64 (1.3.1-1) ...
214s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
214s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
214s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
214s Selecting previously unselected package cpp-13.
214s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
214s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
214s Selecting previously unselected package cpp-aarch64-linux-gnu.
214s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
214s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
214s Selecting previously unselected package cpp.
214s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
214s Unpacking cpp (4:13.2.0-7ubuntu1) ...
214s Selecting previously unselected package libcc1-0:arm64.
214s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
214s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
214s Selecting previously unselected package libitm1:arm64.
214s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ...
214s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
214s Selecting previously unselected package libatomic1:arm64.
215s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
215s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
215s Selecting previously unselected package libasan8:arm64.
215s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ...
215s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
215s Selecting previously unselected package liblsan0:arm64.
215s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
215s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
215s Selecting previously unselected package libtsan2:arm64.
215s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
215s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
215s Selecting previously unselected package libubsan1:arm64.
215s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
215s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
215s Selecting previously unselected package libhwasan0:arm64.
215s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
215s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
215s Selecting previously unselected package libgcc-13-dev:arm64.
215s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
215s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
215s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
215s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
215s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
215s Selecting previously unselected package gcc-13.
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215s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
215s Selecting previously unselected package gcc-aarch64-linux-gnu.
215s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
215s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
215s Selecting previously unselected package gcc.
215s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
215s Unpacking gcc (4:13.2.0-7ubuntu1) ...
215s Selecting previously unselected package libstdc++-13-dev:arm64.
215s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
215s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
216s Selecting previously unselected package g++-13-aarch64-linux-gnu.
216s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
216s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
216s Selecting previously unselected package g++-13.
216s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ...
216s Unpacking g++-13 (13.2.0-17ubuntu2) ...
216s Selecting previously unselected package g++-aarch64-linux-gnu.
216s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
216s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
216s Selecting previously unselected package g++.
216s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
216s Unpacking g++ (4:13.2.0-7ubuntu1) ...
216s Selecting previously unselected package build-essential.
216s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ...
216s Unpacking build-essential (12.10ubuntu1) ...
216s Selecting previously unselected package dctrl-tools.
216s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ...
216s Unpacking dctrl-tools (2.24-3build2) ...
216s Selecting previously unselected package libgfortran-13-dev:arm64.
216s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
216s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
216s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
216s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
216s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
216s Selecting previously unselected package gfortran-13.
216s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
216s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
216s Selecting previously unselected package gfortran-aarch64-linux-gnu.
216s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
216s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
216s Selecting previously unselected package gfortran.
216s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
216s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
216s Selecting previously unselected package icu-devtools.
217s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ...
217s Unpacking icu-devtools (74.2-1ubuntu1) ...
217s Selecting previously unselected package libblas-dev:arm64.
217s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ...
217s Unpacking libblas-dev:arm64 (3.12.0-3) ...
217s Selecting previously unselected package libbz2-dev:arm64.
217s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
217s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
217s Selecting previously unselected package libicu-dev:arm64.
217s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ...
217s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
217s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
217s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
217s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
217s Selecting previously unselected package libjpeg8-dev:arm64.
217s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
217s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
217s Selecting previously unselected package libjpeg-dev:arm64.
217s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
217s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
217s Selecting previously unselected package liblapack-dev:arm64.
217s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ...
217s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
217s Selecting previously unselected package libncurses-dev:arm64.
217s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
217s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
217s Selecting previously unselected package libpcre2-16-0:arm64.
217s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpcre2-32-0:arm64.
217s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpcre2-posix3:arm64.
217s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpcre2-dev:arm64.
217s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpkgconf3:arm64.
217s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ...
217s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
217s Selecting previously unselected package zlib1g-dev:arm64.
217s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
217s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
217s Selecting previously unselected package libpng-dev:arm64.
217s Preparing to unpack .../53-libpng-dev_1.6.43-1_arm64.deb ...
217s Unpacking libpng-dev:arm64 (1.6.43-1) ...
218s Selecting previously unselected package libreadline-dev:arm64.
218s Preparing to unpack .../54-libreadline-dev_8.2-3_arm64.deb ...
218s Unpacking libreadline-dev:arm64 (8.2-3) ...
218s Selecting previously unselected package pkgconf-bin.
218s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ...
218s Unpacking pkgconf-bin (1.8.1-2) ...
218s Selecting previously unselected package pkgconf:arm64.
218s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ...
218s Unpacking pkgconf:arm64 (1.8.1-2) ...
218s Selecting previously unselected package pkg-config:arm64.
218s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ...
218s Unpacking pkg-config:arm64 (1.8.1-2) ...
218s Selecting previously unselected package liblzma-dev:arm64.
218s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ...
218s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ...
218s Selecting previously unselected package r-base-dev.
218s Preparing to unpack .../59-r-base-dev_4.3.2-1build1_all.deb ...
218s Unpacking r-base-dev (4.3.2-1build1) ...
218s Selecting previously unselected package pkg-r-autopkgtest.
218s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
218s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
218s Selecting previously unselected package autopkgtest-satdep.
218s Preparing to unpack .../61-2-autopkgtest-satdep.deb ...
218s Unpacking autopkgtest-satdep (0) ...
218s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
218s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
218s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
218s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
218s Setting up libpkgconf3:arm64 (1.8.1-2) ...
218s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
218s Setting up libmpc3:arm64 (1.3.1-1) ...
218s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
218s Setting up icu-devtools (74.2-1ubuntu1) ...
218s Setting up pkgconf-bin (1.8.1-2) ...
218s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
218s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
218s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
218s Setting up libnsl-dev:arm64 (1.3.0-3) ...
218s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
218s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
218s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
218s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
218s Setting up libisl23:arm64 (0.26-3) ...
218s Setting up libc-dev-bin (2.39-0ubuntu2) ...
218s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
218s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
218s Setting up libblas-dev:arm64 (3.12.0-3) ...
218s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
218s Setting up dctrl-tools (2.24-3build2) ...
218s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
218s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
218s Setting up pkgconf:arm64 (1.8.1-2) ...
218s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
218s Setting up liblapack-dev:arm64 (3.12.0-3) ...
218s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
218s Setting up pkg-config:arm64 (1.8.1-2) ...
218s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
218s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
218s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
218s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
218s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
218s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
218s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
218s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
218s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
218s Setting up cpp-13 (13.2.0-17ubuntu2) ...
218s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
218s Setting up libreadline-dev:arm64 (8.2-3) ...
218s Setting up gcc-13 (13.2.0-17ubuntu2) ...
218s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
218s Setting up cpp (4:13.2.0-7ubuntu1) ...
218s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
218s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
218s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
218s Setting up g++-13 (13.2.0-17ubuntu2) ...
218s Setting up libpng-dev:arm64 (1.6.43-1) ...
218s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
218s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
218s Setting up gcc (4:13.2.0-7ubuntu1) ...
218s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
218s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
218s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
218s Setting up gfortran (4:13.2.0-7ubuntu1) ...
218s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
218s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
218s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
218s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
218s Setting up g++ (4:13.2.0-7ubuntu1) ...
218s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
218s Setting up build-essential (12.10ubuntu1) ...
218s Setting up r-base-dev (4.3.2-1build1) ...
218s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
218s Setting up autopkgtest-satdep (0) ...
218s Processing triggers for man-db (2.12.0-3) ...
219s Processing triggers for install-info (7.1-3) ...
219s Processing triggers for libc-bin (2.39-0ubuntu2) ...
222s (Reading database ... 80086 files and directories currently installed.)
222s Removing autopkgtest-satdep (0) ...
223s autopkgtest [19:29:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
223s autopkgtest [19:29:19]: test pkg-r-autopkgtest: [-----------------------
223s Test: Try to load the R library pcaPP
223s 
223s R version 4.3.2 (2023-10-31) -- "Eye Holes"
223s Copyright (C) 2023 The R Foundation for Statistical Computing
223s Platform: aarch64-unknown-linux-gnu (64-bit)
223s 
223s R is free software and comes with ABSOLUTELY NO WARRANTY.
223s You are welcome to redistribute it under certain conditions.
223s Type 'license()' or 'licence()' for distribution details.
223s 
223s R is a collaborative project with many contributors.
223s Type 'contributors()' for more information and
223s 'citation()' on how to cite R or R packages in publications.
223s 
223s Type 'demo()' for some demos, 'help()' for on-line help, or
223s 'help.start()' for an HTML browser interface to help.
223s Type 'q()' to quit R.
223s 
223s > library('pcaPP')
223s > 
223s > 
223s Other tests are currently unsupported!
223s They will be progressively added.
224s autopkgtest [19:29:20]: test pkg-r-autopkgtest: -----------------------]
224s pkg-r-autopkgtest    PASS
224s autopkgtest [19:29:20]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
225s autopkgtest [19:29:21]: @@@@@@@@@@@@@@@@@@@@ summary
225s run-unit-test        PASS
225s pkg-r-autopkgtest    PASS
235s Creating nova instance adt-noble-arm64-r-cran-pcapp-20240316-192536-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...