0s autopkgtest [19:25:10]: starting date and time: 2024-03-16 19:25:10+0000 0s autopkgtest [19:25:10]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [19:25:10]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yweo3nze/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-partykit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-16.secgroup --name adt-noble-arm64-r-cran-partykit-20240316-192510-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 153s autopkgtest [19:27:43]: testbed dpkg architecture: arm64 153s autopkgtest [19:27:43]: testbed apt version: 2.7.12 153s autopkgtest [19:27:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 153s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 154s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 154s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 154s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3657 kB] 154s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 154s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 154s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 154s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 154s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 154s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4013 kB] 154s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 154s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 154s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 156s Fetched 9065 kB in 2s (5477 kB/s) 156s Reading package lists... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s Calculating upgrade... 160s The following packages will be REMOVED: 160s libglib2.0-0 libssl3 160s The following NEW packages will be installed: 160s libglib2.0-0t64 libssl3t64 xdg-user-dirs 160s The following packages have been kept back: 160s curl 160s The following packages will be upgraded: 160s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 160s ubuntu-minimal ubuntu-standard 160s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 160s Need to get 4613 kB of archives. 160s After this operation, 211 kB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 161s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 161s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 161s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 161s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 161s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 161s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 161s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 161s Fetched 4613 kB in 1s (6112 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 162s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 162s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 162s udisks2 depends on libglib2.0-0 (>= 2.77.0). 162s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 162s python3-gi depends on libglib2.0-0 (>= 2.77.0). 162s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 162s netplan.io depends on libglib2.0-0 (>= 2.70.0). 162s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 162s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 162s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 162s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 162s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 162s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 162s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 162s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 162s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 162s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 162s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 162s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 162s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 162s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 162s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 162s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 162s fwupd depends on libglib2.0-0 (>= 2.79.0). 162s bolt depends on libglib2.0-0 (>= 2.56.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 162s Selecting previously unselected package libglib2.0-0t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 162s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 162s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 162s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 162s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 162s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 162s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 162s wget depends on libssl3 (>= 3.0.0). 162s u-boot-tools depends on libssl3 (>= 3.0.0). 162s tnftp depends on libssl3 (>= 3.0.0). 162s tcpdump depends on libssl3 (>= 3.0.0). 162s systemd-resolved depends on libssl3 (>= 3.0.0). 162s systemd depends on libssl3 (>= 3.0.0). 162s sudo depends on libssl3 (>= 3.0.0). 162s sbsigntool depends on libssl3 (>= 3.0.0). 162s rsync depends on libssl3 (>= 3.0.0). 162s python3-cryptography depends on libssl3 (>= 3.0.0). 162s openssh-server depends on libssl3 (>= 3.0.10). 162s openssh-client depends on libssl3 (>= 3.0.10). 162s mtd-utils depends on libssl3 (>= 3.0.0). 162s mokutil depends on libssl3 (>= 3.0.0). 162s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 162s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 162s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 162s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 162s libnvme1 depends on libssl3 (>= 3.0.0). 162s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 162s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 162s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 162s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 162s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 162s kmod depends on libssl3 (>= 3.0.0). 162s dhcpcd-base depends on libssl3 (>= 3.0.0). 162s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 162s Selecting previously unselected package libssl3t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 162s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 162s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 162s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 162s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 162s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 162s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 162s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 162s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 162s Unpacking ubuntu-minimal (1.536) over (1.535) ... 162s Selecting previously unselected package xdg-user-dirs. 162s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 162s Unpacking xdg-user-dirs (0.18-1) ... 162s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 162s Unpacking ubuntu-standard (1.536) over (1.535) ... 162s Setting up ubuntu-minimal (1.536) ... 162s Setting up xdg-user-dirs (0.18-1) ... 162s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 162s Setting up libtirpc-common (1.3.4+ds-1.1) ... 162s Setting up ubuntu-standard (1.536) ... 162s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 162s No schema files found: doing nothing. 162s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 162s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 162s Setting up openssl (3.0.13-0ubuntu1) ... 162s Setting up readline-common (8.2-3.1) ... 162s Processing triggers for man-db (2.12.0-3) ... 163s Processing triggers for install-info (7.1-3) ... 163s Processing triggers for libc-bin (2.39-0ubuntu2) ... 163s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 165s sh: Attempting to set up Debian/Ubuntu apt sources automatically 165s sh: Distribution appears to be Ubuntu 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s eatmydata is already the newest version (131-1). 166s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s dbus is already the newest version (1.14.10-4ubuntu1). 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s rng-tools-debian is already the newest version (2.4). 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s The following packages will be REMOVED: 169s cloud-init* python3-configobj* python3-debconf* 169s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 169s After this operation, 3252 kB disk space will be freed. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 169s Removing cloud-init (24.1.1-0ubuntu1) ... 170s Removing python3-configobj (5.0.8-3) ... 170s Removing python3-debconf (1.5.86) ... 170s Processing triggers for man-db (2.12.0-3) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 171s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 171s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 171s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 171s invoke-rc.d: policy-rc.d denied execution of try-restart. 171s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s linux-generic is already the newest version (6.8.0-11.11+1). 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 173s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 173s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 175s Reading package lists... 175s Reading package lists... 175s Building dependency tree... 175s Reading state information... 175s Calculating upgrade... 176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s autopkgtest [19:28:07]: rebooting testbed after setup commands that affected boot 370s autopkgtest [19:31:20]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 373s autopkgtest [19:31:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-partykit 375s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-partykit 1.2-20-1 (dsc) [2254 B] 375s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-partykit 1.2-20-1 (tar) [2100 kB] 375s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-partykit 1.2-20-1 (diff) [7548 B] 376s gpgv: Signature made Mon Jun 26 11:26:32 2023 UTC 376s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 376s gpgv: issuer "tille@debian.org" 376s gpgv: Can't check signature: No public key 376s dpkg-source: warning: cannot verify inline signature for ./r-cran-partykit_1.2-20-1.dsc: no acceptable signature found 376s autopkgtest [19:31:26]: testing package r-cran-partykit version 1.2-20-1 376s autopkgtest [19:31:26]: build not needed 377s autopkgtest [19:31:27]: test run-unit-test: preparing testbed 378s Reading package lists... 379s Building dependency tree... 379s Reading state information... 379s Starting pkgProblemResolver with broken count: 0 379s Starting 2 pkgProblemResolver with broken count: 0 379s Done 380s The following additional packages will be installed: 380s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 380s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 380s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 380s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 380s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 380s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 380s libxft2 libxrender1 libxss1 libxt6 r-base-core r-cran-codetools r-cran-coin 380s r-cran-formula r-cran-inum r-cran-lattice r-cran-libcoin r-cran-mass 380s r-cran-matrix r-cran-matrixstats r-cran-mlbench r-cran-modeltools 380s r-cran-multcomp r-cran-mvtnorm r-cran-party r-cran-partykit r-cran-rpart 380s r-cran-sandwich r-cran-strucchange r-cran-survival r-cran-th.data r-cran-xml 380s r-cran-zoo unzip x11-common xdg-utils zip 380s Suggested packages: 380s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 380s r-cran-rjava r-cran-vcd r-cran-aer r-cran-psychotools r-cran-psychotree 380s r-cran-randomforest 380s Recommended packages: 380s r-recommended r-base-dev r-doc-html r-cran-xtable r-cran-e1071 r-cran-vcd 380s r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown 380s r-cran-r.devices r-cran-r.rsp r-cran-colorspace r-cran-ipred 380s r-cran-randomforest libfile-mimeinfo-perl libnet-dbus-perl 380s libx11-protocol-perl x11-utils x11-xserver-utils 380s The following NEW packages will be installed: 380s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 380s fonts-dejavu-mono libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 380s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 380s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 380s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 380s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 380s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 380s r-base-core r-cran-codetools r-cran-coin r-cran-formula r-cran-inum 380s r-cran-lattice r-cran-libcoin r-cran-mass r-cran-matrix r-cran-matrixstats 380s r-cran-mlbench r-cran-modeltools r-cran-multcomp r-cran-mvtnorm r-cran-party 380s r-cran-partykit r-cran-rpart r-cran-sandwich r-cran-strucchange 380s r-cran-survival r-cran-th.data r-cran-xml r-cran-zoo unzip x11-common 380s xdg-utils zip 380s 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 380s Need to get 72.9 MB/72.9 MB of archives. 380s After this operation, 125 MB of additional disk space will be used. 380s Get:1 /tmp/autopkgtest.jQ2php/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 381s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 381s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 381s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 381s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 381s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 381s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 381s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 381s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 381s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 381s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 381s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 381s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 381s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 381s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 381s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 381s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 381s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 381s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 381s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 381s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 381s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 381s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 382s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 382s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 382s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 382s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 382s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 382s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 382s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 382s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 382s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 382s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 382s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 382s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 382s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 382s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 382s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 382s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 382s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 382s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 382s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 382s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 382s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 382s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 382s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 382s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 382s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 383s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 383s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mvtnorm arm64 1.2-4-1 [723 kB] 383s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-libcoin arm64 1.0-10-1 [766 kB] 383s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 383s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modeltools all 0.2-23-2build1 [219 kB] 383s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 383s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-th.data all 1.1-2-2 [8794 kB] 383s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 383s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 383s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-multcomp all 1.4-25-1 [709 kB] 383s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-coin arm64 1.4-3-1 [1559 kB] 383s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 383s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-inum all 1.0-5-1 [45.1 kB] 383s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mlbench arm64 2.1-3.1-1 [1044 kB] 383s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-strucchange arm64 1.5-3-1 [927 kB] 383s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-party arm64 1.3-14-1 [1136 kB] 383s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 383s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-partykit arm64 1.2-20-1 [2420 kB] 383s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 384s Preconfiguring packages ... 384s Fetched 72.9 MB in 3s (24.8 MB/s) 385s Selecting previously unselected package fonts-dejavu-mono. 385s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 385s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 385s Unpacking fonts-dejavu-mono (2.37-8) ... 385s Selecting previously unselected package fonts-dejavu-core. 385s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 385s Unpacking fonts-dejavu-core (2.37-8) ... 385s Selecting previously unselected package fontconfig-config. 385s Preparing to unpack .../02-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 385s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 385s Selecting previously unselected package libfontconfig1:arm64. 385s Preparing to unpack .../03-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 385s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 385s Selecting previously unselected package fontconfig. 385s Preparing to unpack .../04-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 385s Unpacking fontconfig (2.15.0-1ubuntu1) ... 385s Selecting previously unselected package libblas3:arm64. 385s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 385s Unpacking libblas3:arm64 (3.12.0-3) ... 385s Selecting previously unselected package libpixman-1-0:arm64. 385s Preparing to unpack .../06-libpixman-1-0_0.42.2-1_arm64.deb ... 385s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 386s Selecting previously unselected package libxcb-render0:arm64. 386s Preparing to unpack .../07-libxcb-render0_1.15-1_arm64.deb ... 386s Unpacking libxcb-render0:arm64 (1.15-1) ... 386s Selecting previously unselected package libxcb-shm0:arm64. 386s Preparing to unpack .../08-libxcb-shm0_1.15-1_arm64.deb ... 386s Unpacking libxcb-shm0:arm64 (1.15-1) ... 386s Selecting previously unselected package libxrender1:arm64. 386s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 386s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 386s Selecting previously unselected package libcairo2:arm64. 386s Preparing to unpack .../10-libcairo2_1.18.0-1_arm64.deb ... 386s Unpacking libcairo2:arm64 (1.18.0-1) ... 386s Selecting previously unselected package libdatrie1:arm64. 386s Preparing to unpack .../11-libdatrie1_0.2.13-3_arm64.deb ... 386s Unpacking libdatrie1:arm64 (0.2.13-3) ... 386s Selecting previously unselected package libdeflate0:arm64. 386s Preparing to unpack .../12-libdeflate0_1.19-1_arm64.deb ... 386s Unpacking libdeflate0:arm64 (1.19-1) ... 386s Selecting previously unselected package libgfortran5:arm64. 386s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 386s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 386s Selecting previously unselected package libgomp1:arm64. 386s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 386s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 386s Selecting previously unselected package libgraphite2-3:arm64. 386s Preparing to unpack .../15-libgraphite2-3_1.3.14-2_arm64.deb ... 386s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 386s Selecting previously unselected package libharfbuzz0b:arm64. 386s Preparing to unpack .../16-libharfbuzz0b_8.3.0-2_arm64.deb ... 386s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 386s Selecting previously unselected package x11-common. 386s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu2_all.deb ... 386s Unpacking x11-common (1:7.7+23ubuntu2) ... 386s Selecting previously unselected package libice6:arm64. 386s Preparing to unpack .../18-libice6_2%3a1.0.10-1build2_arm64.deb ... 386s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 386s Selecting previously unselected package libjpeg-turbo8:arm64. 386s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 386s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 386s Selecting previously unselected package libjpeg8:arm64. 386s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 386s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 387s Selecting previously unselected package liblapack3:arm64. 387s Preparing to unpack .../21-liblapack3_3.12.0-3_arm64.deb ... 387s Unpacking liblapack3:arm64 (3.12.0-3) ... 387s Selecting previously unselected package liblerc4:arm64. 387s Preparing to unpack .../22-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 387s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 387s Selecting previously unselected package libthai-data. 387s Preparing to unpack .../23-libthai-data_0.1.29-2_all.deb ... 387s Unpacking libthai-data (0.1.29-2) ... 387s Selecting previously unselected package libthai0:arm64. 387s Preparing to unpack .../24-libthai0_0.1.29-2_arm64.deb ... 387s Unpacking libthai0:arm64 (0.1.29-2) ... 387s Selecting previously unselected package libpango-1.0-0:arm64. 387s Preparing to unpack .../25-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 387s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 387s Selecting previously unselected package libpangoft2-1.0-0:arm64. 387s Preparing to unpack .../26-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 387s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 387s Selecting previously unselected package libpangocairo-1.0-0:arm64. 387s Preparing to unpack .../27-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 387s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 387s Selecting previously unselected package libpaper1:arm64. 387s Preparing to unpack .../28-libpaper1_1.1.29_arm64.deb ... 387s Unpacking libpaper1:arm64 (1.1.29) ... 387s Selecting previously unselected package libpaper-utils. 387s Preparing to unpack .../29-libpaper-utils_1.1.29_arm64.deb ... 387s Unpacking libpaper-utils (1.1.29) ... 387s Selecting previously unselected package libsharpyuv0:arm64. 387s Preparing to unpack .../30-libsharpyuv0_1.3.2-0.4_arm64.deb ... 387s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 387s Selecting previously unselected package libsm6:arm64. 387s Preparing to unpack .../31-libsm6_2%3a1.2.3-1build2_arm64.deb ... 387s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 387s Selecting previously unselected package libtcl8.6:arm64. 387s Preparing to unpack .../32-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 387s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 387s Selecting previously unselected package libjbig0:arm64. 387s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 387s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 387s Selecting previously unselected package libwebp7:arm64. 387s Preparing to unpack .../34-libwebp7_1.3.2-0.4_arm64.deb ... 387s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 387s Selecting previously unselected package libtiff6:arm64. 387s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 387s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 387s Selecting previously unselected package libxft2:arm64. 387s Preparing to unpack .../36-libxft2_2.3.6-1_arm64.deb ... 387s Unpacking libxft2:arm64 (2.3.6-1) ... 387s Selecting previously unselected package libxss1:arm64. 387s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build2_arm64.deb ... 387s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 387s Selecting previously unselected package libtk8.6:arm64. 387s Preparing to unpack .../38-libtk8.6_8.6.13-2_arm64.deb ... 387s Unpacking libtk8.6:arm64 (8.6.13-2) ... 388s Selecting previously unselected package libxt6:arm64. 388s Preparing to unpack .../39-libxt6_1%3a1.2.1-1.1_arm64.deb ... 388s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 388s Selecting previously unselected package zip. 388s Preparing to unpack .../40-zip_3.0-13_arm64.deb ... 388s Unpacking zip (3.0-13) ... 388s Selecting previously unselected package unzip. 388s Preparing to unpack .../41-unzip_6.0-28ubuntu3_arm64.deb ... 388s Unpacking unzip (6.0-28ubuntu3) ... 388s Selecting previously unselected package xdg-utils. 388s Preparing to unpack .../42-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 388s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 388s Selecting previously unselected package r-base-core. 388s Preparing to unpack .../43-r-base-core_4.3.2-1build1_arm64.deb ... 388s Unpacking r-base-core (4.3.2-1build1) ... 388s Selecting previously unselected package r-cran-codetools. 388s Preparing to unpack .../44-r-cran-codetools_0.2-19-1_all.deb ... 388s Unpacking r-cran-codetools (0.2-19-1) ... 388s Selecting previously unselected package r-cran-lattice. 388s Preparing to unpack .../45-r-cran-lattice_0.22-5-1_arm64.deb ... 388s Unpacking r-cran-lattice (0.22-5-1) ... 388s Selecting previously unselected package r-cran-matrix. 388s Preparing to unpack .../46-r-cran-matrix_1.6-5-1_arm64.deb ... 388s Unpacking r-cran-matrix (1.6-5-1) ... 388s Selecting previously unselected package r-cran-survival. 389s Preparing to unpack .../47-r-cran-survival_3.5-8-1_arm64.deb ... 389s Unpacking r-cran-survival (3.5-8-1) ... 389s Selecting previously unselected package r-cran-mvtnorm. 389s Preparing to unpack .../48-r-cran-mvtnorm_1.2-4-1_arm64.deb ... 389s Unpacking r-cran-mvtnorm (1.2-4-1) ... 389s Selecting previously unselected package r-cran-libcoin. 389s Preparing to unpack .../49-r-cran-libcoin_1.0-10-1_arm64.deb ... 389s Unpacking r-cran-libcoin (1.0-10-1) ... 389s Selecting previously unselected package r-cran-matrixstats. 389s Preparing to unpack .../50-r-cran-matrixstats_1.2.0-1_arm64.deb ... 389s Unpacking r-cran-matrixstats (1.2.0-1) ... 389s Selecting previously unselected package r-cran-modeltools. 389s Preparing to unpack .../51-r-cran-modeltools_0.2-23-2build1_all.deb ... 389s Unpacking r-cran-modeltools (0.2-23-2build1) ... 389s Selecting previously unselected package r-cran-mass. 389s Preparing to unpack .../52-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 389s Unpacking r-cran-mass (7.3-60.0.1-1) ... 389s Selecting previously unselected package r-cran-th.data. 389s Preparing to unpack .../53-r-cran-th.data_1.1-2-2_all.deb ... 389s Unpacking r-cran-th.data (1.1-2-2) ... 389s Selecting previously unselected package r-cran-zoo. 389s Preparing to unpack .../54-r-cran-zoo_1.8-12-2_arm64.deb ... 389s Unpacking r-cran-zoo (1.8-12-2) ... 389s Selecting previously unselected package r-cran-sandwich. 389s Preparing to unpack .../55-r-cran-sandwich_3.1-0-1_all.deb ... 389s Unpacking r-cran-sandwich (3.1-0-1) ... 389s Selecting previously unselected package r-cran-multcomp. 389s Preparing to unpack .../56-r-cran-multcomp_1.4-25-1_all.deb ... 389s Unpacking r-cran-multcomp (1.4-25-1) ... 389s Selecting previously unselected package r-cran-coin. 389s Preparing to unpack .../57-r-cran-coin_1.4-3-1_arm64.deb ... 389s Unpacking r-cran-coin (1.4-3-1) ... 389s Selecting previously unselected package r-cran-formula. 389s Preparing to unpack .../58-r-cran-formula_1.2-5-1_all.deb ... 389s Unpacking r-cran-formula (1.2-5-1) ... 389s Selecting previously unselected package r-cran-inum. 389s Preparing to unpack .../59-r-cran-inum_1.0-5-1_all.deb ... 389s Unpacking r-cran-inum (1.0-5-1) ... 389s Selecting previously unselected package r-cran-mlbench. 389s Preparing to unpack .../60-r-cran-mlbench_2.1-3.1-1_arm64.deb ... 389s Unpacking r-cran-mlbench (2.1-3.1-1) ... 390s Selecting previously unselected package r-cran-strucchange. 390s Preparing to unpack .../61-r-cran-strucchange_1.5-3-1_arm64.deb ... 390s Unpacking r-cran-strucchange (1.5-3-1) ... 390s Selecting previously unselected package r-cran-party. 390s Preparing to unpack .../62-r-cran-party_1.3-14-1_arm64.deb ... 390s Unpacking r-cran-party (1.3-14-1) ... 390s Selecting previously unselected package 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cache... done. 394s Setting up libxft2:arm64 (2.3.6-1) ... 394s Setting up libtk8.6:arm64 (8.6.13-2) ... 394s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 394s Setting up libcairo2:arm64 (1.18.0-1) ... 394s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 394s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 394s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 394s Setting up r-base-core (4.3.2-1build1) ... 394s 394s Creating config file /etc/R/Renviron with new version 394s Setting up r-cran-lattice (0.22-5-1) ... 394s Setting up r-cran-modeltools (0.2-23-2build1) ... 394s Setting up r-cran-formula (1.2-5-1) ... 394s Setting up r-cran-xml (3.99-0.16.1-1) ... 394s Setting up r-cran-codetools (0.2-19-1) ... 394s Setting up r-cran-matrixstats (1.2.0-1) ... 394s Setting up r-cran-mass (7.3-60.0.1-1) ... 394s Setting up r-cran-mlbench (2.1-3.1-1) ... 394s Setting up r-cran-mvtnorm (1.2-4-1) ... 394s Setting up r-cran-zoo (1.8-12-2) ... 394s Setting up r-cran-matrix (1.6-5-1) ... 394s Setting up r-cran-libcoin (1.0-10-1) ... 394s Setting up r-cran-sandwich (3.1-0-1) ... 394s Setting up r-cran-survival (3.5-8-1) ... 394s Setting up r-cran-strucchange (1.5-3-1) ... 394s Setting up r-cran-inum (1.0-5-1) ... 394s Setting up r-cran-th.data (1.1-2-2) ... 394s Setting up r-cran-multcomp (1.4-25-1) ... 394s Setting up r-cran-rpart (4.1.23-1) ... 394s Setting up r-cran-coin (1.4-3-1) ... 394s Setting up r-cran-partykit (1.2-20-1) ... 394s Setting up r-cran-party (1.3-14-1) ... 394s Setting up autopkgtest-satdep (0) ... 394s Processing triggers for man-db (2.12.0-3) ... 395s Processing triggers for install-info (7.1-3) ... 396s Processing triggers for libc-bin (2.39-0ubuntu2) ... 403s (Reading database ... 78076 files and directories currently installed.) 403s Removing autopkgtest-satdep (0) ... 404s autopkgtest [19:31:54]: test run-unit-test: [----------------------- 404s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 404s BEGIN TEST constparty.R 405s 405s R version 4.3.2 (2023-10-31) -- "Eye Holes" 405s Copyright (C) 2023 The R Foundation for Statistical Computing 405s Platform: aarch64-unknown-linux-gnu (64-bit) 405s 405s R is free software and comes with ABSOLUTELY NO WARRANTY. 405s You are welcome to redistribute it under certain conditions. 405s Type 'license()' or 'licence()' for distribution details. 405s 405s R is a collaborative project with many contributors. 405s Type 'contributors()' for more information and 405s 'citation()' on how to cite R or R packages in publications. 405s 405s Type 'demo()' for some demos, 'help()' for on-line help, or 405s 'help.start()' for an HTML browser interface to help. 405s Type 'q()' to quit R. 405s 405s > ### R code from vignette source 'constparty.Rnw' 405s > 405s > ### test here after removal of RWeka dependent code 405s > 405s > ################################################### 405s > ### code chunk number 1: setup 405s > ################################################### 405s > options(width = 70) 405s > library("partykit") 405s Loading required package: grid 405s Loading required package: libcoin 405s Loading required package: mvtnorm 407s > set.seed(290875) 407s > 407s > 407s > ################################################### 407s > ### code chunk number 2: Titanic 407s > ################################################### 407s > data("Titanic", package = "datasets") 407s > ttnc <- as.data.frame(Titanic) 407s > ttnc <- ttnc[rep(1:nrow(ttnc), ttnc$Freq), 1:4] 407s > names(ttnc)[2] <- "Gender" 407s > 407s > 407s > ################################################### 407s > ### code chunk number 3: rpart 407s > ################################################### 407s > library("rpart") 407s > (rp <- rpart(Survived ~ ., data = ttnc, model = TRUE)) 407s n= 2201 407s 407s node), split, n, loss, yval, (yprob) 407s * denotes terminal node 407s 407s 1) root 2201 711 No (0.6769650 0.3230350) 407s 2) Gender=Male 1731 367 No (0.7879838 0.2120162) 407s 4) Age=Adult 1667 338 No (0.7972406 0.2027594) * 407s 5) Age=Child 64 29 No (0.5468750 0.4531250) 407s 10) Class=3rd 48 13 No (0.7291667 0.2708333) * 407s 11) Class=1st,2nd 16 0 Yes (0.0000000 1.0000000) * 407s 3) Gender=Female 470 126 Yes (0.2680851 0.7319149) 407s 6) Class=3rd 196 90 No (0.5408163 0.4591837) * 407s 7) Class=1st,2nd,Crew 274 20 Yes (0.0729927 0.9270073) * 407s > 407s > 407s > ################################################### 407s > ### code chunk number 4: rpart-party 407s > ################################################### 407s > (party_rp <- as.party(rp)) 407s 407s Model formula: 407s Survived ~ Class + Gender + Age 407s 407s Fitted party: 407s [1] root 407s | [2] Gender in Male 407s | | [3] Age in Adult: No (n = 1667, err = 20.3%) 407s | | [4] Age in Child 407s | | | [5] Class in 3rd: No (n = 48, err = 27.1%) 407s | | | [6] Class in 1st, 2nd: Yes (n = 16, err = 0.0%) 407s | [7] Gender in Female 407s | | [8] Class in 3rd: No (n = 196, err = 45.9%) 407s | | [9] Class in 1st, 2nd, Crew: Yes (n = 274, err = 7.3%) 407s 407s Number of inner nodes: 4 407s Number of terminal nodes: 5 407s > 407s > 407s > ################################################### 407s > ### code chunk number 5: rpart-plot-orig 407s > ################################################### 407s > plot(rp) 407s > text(rp) 407s > 407s > 407s > ################################################### 407s > ### code chunk number 6: rpart-plot 407s > ################################################### 407s > plot(party_rp) 407s > 407s > 407s > ################################################### 407s > ### code chunk number 7: rpart-pred 407s > ################################################### 407s > all.equal(predict(rp), predict(party_rp, type = "prob"), 407s + check.attributes = FALSE) 407s [1] TRUE 407s > 407s > 407s > ################################################### 407s > ### code chunk number 8: rpart-fitted 407s > ################################################### 407s > str(fitted(party_rp)) 407s 'data.frame': 2201 obs. of 2 variables: 407s $ (fitted) : int 5 5 5 5 5 5 5 5 5 5 ... 407s $ (response): Factor w/ 2 levels "No","Yes": 1 1 1 1 1 1 1 1 1 1 ... 407s > 407s > 407s > ################################################### 407s > ### code chunk number 9: rpart-prob 407s > ################################################### 407s > prop.table(do.call("table", fitted(party_rp)), 1) 407s (response) 407s (fitted) No Yes 407s 3 0.7972406 0.2027594 407s 5 0.7291667 0.2708333 407s 6 0.0000000 1.0000000 407s 8 0.5408163 0.4591837 407s 9 0.0729927 0.9270073 407s > 407s > 407s > ################################################### 407s > ### code chunk number 10: J48 407s > ################################################### 407s > #if (require("RWeka")) { 407s > # j48 <- J48(Survived ~ ., data = ttnc) 407s > #} else { 407s > # j48 <- rpart(Survived ~ ., data = ttnc) 407s > #} 407s > #print(j48) 407s > # 407s > # 407s > #################################################### 407s > #### code chunk number 11: J48-party 407s > #################################################### 407s > #(party_j48 <- as.party(j48)) 407s > # 407s > # 407s > #################################################### 407s > #### code chunk number 12: J48-plot 407s > #################################################### 407s > #plot(party_j48) 407s > # 407s > # 407s > #################################################### 407s > #### code chunk number 13: J48-pred 407s > #################################################### 407s > #all.equal(predict(j48, type = "prob"), predict(party_j48, type = "prob"), 407s > # check.attributes = FALSE) 407s > 407s > 407s > 408s BEGIN TEST regtest-MIA.R 408s 408s R version 4.3.2 (2023-10-31) -- "Eye Holes" 408s Copyright (C) 2023 The R Foundation for Statistical Computing 408s Platform: aarch64-unknown-linux-gnu (64-bit) 408s 408s R is free software and comes with ABSOLUTELY NO WARRANTY. 408s You are welcome to redistribute it under certain conditions. 408s Type 'license()' or 'licence()' for distribution details. 408s 408s R is a collaborative project with many contributors. 408s Type 'contributors()' for more information and 408s 'citation()' on how to cite R or R packages in publications. 408s 408s Type 'demo()' for some demos, 'help()' for on-line help, or 408s 'help.start()' for an HTML browser interface to help. 408s Type 'q()' to quit R. 408s 408s > suppressWarnings(RNGversion("3.5.2")) 408s > 408s > library("partykit") 408s Loading required package: grid 408s Loading required package: libcoin 409s Loading required package: mvtnorm 410s > set.seed(29) 410s > 410s > n <- 100 410s > x <- 1:n/n 410s > y <- rnorm(n, mean = (x < .5) + 1) 410s > xna <- x 410s > xna[xna < .2] <- NA 410s > d <- data.frame(x = x, y = y) 410s > dna <- data.frame(x = xna, y = y) 410s > 410s > (t1 <- ctree(y ~ x, data = d)) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x <= 0.5: 1.998 (n = 50, err = 52.5) 410s | [3] x > 0.5: 0.743 (n = 50, err = 45.6) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > (t2 <- ctree(y ~ x, data = dna)) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x <= 0.5: 2.070 (n = 37, err = 40.2) 410s | [3] x > 0.5: 0.960 (n = 63, err = 68.5) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > (t3 <- ctree(y ~ x, data = dna, control = ctree_control(MIA = TRUE))) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x <= 0.5: 1.998 (n = 50, err = 52.5) 410s | [3] x > 0.5: 0.743 (n = 50, err = 45.6) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > 410s > predict(t1, type = "node")[is.na(xna)] 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s > predict(t2, type = "node")[is.na(xna)] 410s 3 3 3 2 3 2 2 3 3 2 3 3 3 2 3 3 3 3 2 410s 3 3 3 2 3 2 2 3 3 2 3 3 3 2 3 3 3 3 2 410s > predict(t3, type = "node")[is.na(xna)] 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s > 410s > xna <- x 410s > xna[xna > .8] <- NA 410s > d <- data.frame(x = x, y = y) 410s > dna <- data.frame(x = xna, y = y) 410s > 410s > (t1 <- ctree(y ~ x, data = d)) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x <= 0.5: 1.998 (n = 50, err = 52.5) 410s | [3] x > 0.5: 0.743 (n = 50, err = 45.6) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > (t2 <- ctree(y ~ x, data = dna)) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x <= 0.5: 1.864 (n = 61, err = 65.5) 410s | [3] x > 0.5 410s | | [4] x <= 0.73: 0.755 (n = 29, err = 18.9) 410s | | [5] x > 0.73: 0.150 (n = 10, err = 12.4) 410s 410s Number of inner nodes: 2 410s Number of terminal nodes: 3 410s > (t3 <- ctree(y ~ x, data = dna, control = ctree_control(MIA = TRUE))) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x <= 0.5: 1.998 (n = 50, err = 52.5) 410s | [3] x > 0.5 410s | | [4] x <= 0.73: 0.928 (n = 43, err = 31.9) 410s | | [5] x > 0.73: -0.396 (n = 7, err = 3.1) 410s 410s Number of inner nodes: 2 410s Number of terminal nodes: 3 410s > 410s > (n1 <- predict(t1, type = "node")) 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s > (n2 <- predict(t2, type = "node")) 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 410s 2 2 2 2 2 2 2 2 2 2 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 410s 4 2 2 5 4 4 4 2 2 5 4 2 4 2 2 2 5 2 2 2 410s 4 2 2 5 4 4 4 2 2 5 4 2 4 2 2 2 5 2 2 2 410s > (n3 <- predict(t3, type = "node")) 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 410s 2 2 2 2 2 2 2 2 2 2 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 5 5 5 5 5 5 5 410s 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 410s 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 410s > table(n1, n2) 410s n2 410s n1 2 4 5 410s 2 50 0 0 410s 3 11 29 10 410s > table(n1, n3) 410s n3 410s n1 2 4 5 410s 2 50 0 0 410s 3 0 43 7 410s > 410s > d$x <- as.factor(cut(d$x, breaks = 0:5 / 5)) 410s > dna$x <- as.factor(cut(dna$x, breaks = 0:5 / 5)) 410s > 410s > (t1 <- ctree(y ~ x, data = d)) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x in (0,0.2], (0.2,0.4], (0.4,0.6]: 1.808 (n = 60, err = 68.1) 410s | [3] x in (0.6,0.8], (0.8,1]: 0.714 (n = 40, err = 40.6) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > (t2 <- ctree(y ~ x, data = dna)) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x in (0,0.2], (0.2,0.4], (0.4,0.6]: 1.651 (n = 75, err = 89.0) 410s | [3] x in (0.6,0.8]: 0.529 (n = 25, err = 24.8) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > (t3 <- ctree(y ~ x, data = dna, control = ctree_control(MIA = TRUE))) 410s 410s Model formula: 410s y ~ x 410s 410s Fitted party: 410s [1] root 410s | [2] x in (0.6,0.8]: 0.714 (n = 40, err = 40.6) 410s | [3] x in (0,0.2], (0.2,0.4], (0.4,0.6]: 1.808 (n = 60, err = 68.1) 410s 410s Number of inner nodes: 1 410s Number of terminal nodes: 2 410s > 410s > (n1 <- predict(t1, type = "node")) 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s > (n2 <- predict(t2, type = "node")) 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 2 2 2 2 2 3 2 2 3 2 2 2 2 3 2 2 2 2 3 410s 3 2 2 2 2 2 3 2 2 3 2 2 2 2 3 2 2 2 2 3 410s > (n3 <- predict(t3, type = "node")) 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 410s > table(n1, n2) 410s n2 410s n1 2 3 410s 2 60 0 410s 3 15 25 410s > table(n1, n3) 410s n3 410s n1 2 3 410s 2 0 60 410s 3 40 0 410s > 410s BEGIN TEST regtest-cforest.R 410s 410s R version 4.3.2 (2023-10-31) -- "Eye Holes" 410s Copyright (C) 2023 The R Foundation for Statistical Computing 410s Platform: aarch64-unknown-linux-gnu (64-bit) 410s 410s R is free software and comes with ABSOLUTELY NO WARRANTY. 410s You are welcome to redistribute it under certain conditions. 410s Type 'license()' or 'licence()' for distribution details. 410s 410s R is a collaborative project with many contributors. 410s Type 'contributors()' for more information and 410s 'citation()' on how to cite R or R packages in publications. 410s 410s Type 'demo()' for some demos, 'help()' for on-line help, or 410s 'help.start()' for an HTML browser interface to help. 410s Type 'q()' to quit R. 410s 410s > suppressWarnings(RNGversion("3.5.2")) 410s > 410s > library("partykit") 410s Loading required package: grid 410s Loading required package: libcoin 410s Loading required package: mvtnorm 411s > stopifnot(require("party")) 411s Loading required package: party 411s Loading required package: modeltools 411s Loading required package: stats4 412s Loading required package: strucchange 412s Loading required package: zoo 412s 412s Attaching package: ‘zoo’ 412s 412s The following objects are masked from ‘package:base’: 412s 412s as.Date, as.Date.numeric 412s 412s Loading required package: sandwich 412s > set.seed(29) 412s > 412s > ### regression 412s > airq <- airquality[complete.cases(airquality),] 412s > 412s > mtry <- ncol(airq) - 1L 412s > ntree <- 25 412s > 412s > cf_partykit <- partykit::cforest(Ozone ~ ., data = airq, 412s + ntree = ntree, mtry = mtry) 412s 412s Attaching package: ‘party’ 412s 412s The following objects are masked from ‘package:partykit’: 412s 412s cforest, ctree, ctree_control, edge_simple, mob, mob_control, 412s node_barplot, node_bivplot, node_boxplot, node_inner, node_surv, 412s node_terminal, varimp 412s 412s > 412s > w <- do.call("cbind", cf_partykit$weights) 412s > 412s > cf_party <- party::cforest(Ozone ~ ., data = airq, 412s + control = party::cforest_unbiased(ntree = ntree, mtry = mtry), 412s + weights = w) 413s > 413s > p_partykit <- predict(cf_partykit) 413s > p_party <- predict(cf_party) 413s > 413s > stopifnot(max(abs(p_partykit - p_party)) < sqrt(.Machine$double.eps)) 413s > 413s > prettytree(cf_party@ensemble[[1]], inames = names(airq)[-1]) 413s 1) Wind <= 5.7; criterion = 1, statistic = 30.75 413s 2)* weights = 0 413s 1) Wind > 5.7 413s 3) Temp <= 84; criterion = 1, statistic = 30.238 413s 4) Temp <= 77; criterion = 0.999, statistic = 10.471 413s 5) Wind <= 9.2; criterion = 0.895, statistic = 2.632 413s 6)* weights = 0 413s 5) Wind > 9.2 413s 7) Solar.R <= 112; criterion = 0.907, statistic = 2.823 413s 8)* weights = 0 413s 7) Solar.R > 112 413s 9)* weights = 0 413s 4) Temp > 77 413s 10) Day <= 13; criterion = 0.981, statistic = 5.479 413s 11)* weights = 0 413s 10) Day > 13 413s 12)* weights = 0 413s 3) Temp > 84 413s 13)* weights = 0 413s > party(cf_partykit$nodes[[1]], data = model.frame(cf_partykit)) 413s [1] root 413s | [2] Wind <= 5.7: * 413s | [3] Wind > 5.7 413s | | [4] Temp <= 84 413s | | | [5] Temp <= 77 413s | | | | [6] Wind <= 9.2: * 413s | | | | [7] Wind > 9.2 413s | | | | | [8] Solar.R <= 112: * 413s | | | | | [9] Solar.R > 112: * 413s | | | [10] Temp > 77 413s | | | | [11] Day <= 13: * 413s | | | | [12] Day > 13: * 413s | | [13] Temp > 84: * 413s > 413s > v_party <- do.call("rbind", lapply(1:5, function(i) party::varimp(cf_party))) 413s > 413s > v_partykit <- do.call("rbind", lapply(1:5, function(i) partykit::varimp(cf_partykit))) 414s > 414s > summary(v_party) 414s Solar.R Wind Temp Month 414s Min. :22.87 Min. :146.3 Min. :760.9 Min. :0.5159 414s 1st Qu.:25.06 1st Qu.:152.8 1st Qu.:784.3 1st Qu.:0.5236 414s Median :26.11 Median :176.0 Median :806.2 Median :0.6119 414s Mean :26.90 Mean :171.9 Mean :813.8 Mean :0.7391 414s 3rd Qu.:26.26 3rd Qu.:189.3 3rd Qu.:841.5 3rd Qu.:0.9886 414s Max. :34.18 Max. :195.1 Max. :875.9 Max. :1.0556 414s Day 414s Min. :2.051 414s 1st Qu.:2.512 414s Median :2.689 414s Mean :3.409 414s 3rd Qu.:3.487 414s Max. :6.304 414s > summary(v_partykit) 414s Solar.R Wind Temp Month 414s Min. :23.35 Min. :161.7 Min. :760.8 Min. :-2.446 414s 1st Qu.:24.81 1st Qu.:190.1 1st Qu.:763.4 1st Qu.: 2.983 414s Median :26.93 Median :199.4 Median :768.7 Median : 3.440 414s Mean :29.65 Mean :195.5 Mean :777.1 Mean : 2.662 414s 3rd Qu.:31.46 3rd Qu.:205.0 3rd Qu.:769.2 3rd Qu.: 4.575 414s Max. :41.69 Max. :221.5 Max. :823.4 Max. : 4.757 414s Day 414s Min. :-1.1396 414s 1st Qu.:-0.4362 414s Median :24.3535 414s Mean :17.7578 414s 3rd Qu.:31.8914 414s Max. :34.1200 414s > 414s > party::varimp(cf_party, conditional = TRUE) 414s Solar.R Wind Temp Month Day 414s 16.7190604 100.7812597 534.9587763 -0.2538655 4.4848324 414s > partykit::varimp(cf_partykit, conditional = TRUE) 414s Solar.R Wind Temp Month Day 414s 27.520179 144.897612 476.407961 0.308407 -0.655686 414s > 414s > 414s > ### classification 414s > set.seed(29) 414s > mtry <- ncol(iris) - 1L 414s > ntree <- 25 414s > 414s > cf_partykit <- partykit::cforest(Species ~ ., data = iris, 414s + ntree = ntree, mtry = mtry) 415s > 415s > w <- do.call("cbind", cf_partykit$weights) 415s > 415s > cf_party <- party::cforest(Species ~ ., data = iris, 415s + control = party::cforest_unbiased(ntree = ntree, mtry = mtry), 415s + weights = w) 415s > 415s > p_partykit <- predict(cf_partykit, type = "prob") 415s > p_party <- do.call("rbind", treeresponse(cf_party)) 415s > 415s > stopifnot(max(abs(unclass(p_partykit) - unclass(p_party))) < sqrt(.Machine$double.eps)) 415s > 415s > prettytree(cf_party@ensemble[[1]], inames = names(iris)[-5]) 415s 1) Petal.Length <= 1.9; criterion = 1, statistic = 86.933 415s 2)* weights = 0 415s 1) Petal.Length > 1.9 415s 3) Petal.Width <= 1.6; criterion = 1, statistic = 42.075 415s 4) Sepal.Width <= 2.5; criterion = 0.931, statistic = 3.316 415s 5)* weights = 0 415s 4) Sepal.Width > 2.5 415s 6)* weights = 0 415s 3) Petal.Width > 1.6 415s 7) Petal.Length <= 5.1; criterion = 0.774, statistic = 1.466 415s 8)* weights = 0 415s 7) Petal.Length > 5.1 415s 9)* weights = 0 415s > party(cf_partykit$nodes[[1]], data = model.frame(cf_partykit)) 415s [1] root 415s | [2] Petal.Length <= 1.9: * 415s | [3] Petal.Length > 1.9 415s | | [4] Petal.Width <= 1.6 415s | | | [5] Sepal.Width <= 2.5: * 415s | | | [6] Sepal.Width > 2.5: * 415s | | [7] Petal.Width > 1.6 415s | | | [8] Petal.Length <= 5.1: * 415s | | | [9] Petal.Length > 5.1: * 415s > 415s > v_party <- do.call("rbind", lapply(1:5, function(i) party::varimp(cf_party))) 415s > 415s > v_partykit <- do.call("rbind", lapply(1:5, function(i) 415s + partykit::varimp(cf_partykit, risk = "mis"))) 416s > 416s > summary(v_party) 416s Sepal.Length Sepal.Width Petal.Length Petal.Width 416s Min. :0 Min. :0 Min. :0.3786 Min. :0.3014 416s 1st Qu.:0 1st Qu.:0 1st Qu.:0.3807 1st Qu.:0.3029 416s Median :0 Median :0 Median :0.4000 Median :0.3050 416s Mean :0 Mean :0 Mean :0.3941 Mean :0.3111 416s 3rd Qu.:0 3rd Qu.:0 3rd Qu.:0.4036 3rd Qu.:0.3121 416s Max. :0 Max. :0 Max. :0.4079 Max. :0.3343 416s > summary(v_partykit) 416s Sepal.Width Petal.Length Petal.Width 416s Min. :0 Min. :0.3869 Min. :0.2971 416s 1st Qu.:0 1st Qu.:0.3921 1st Qu.:0.3036 416s Median :0 Median :0.3966 Median :0.3057 416s Mean :0 Mean :0.3952 Mean :0.3117 416s 3rd Qu.:0 3rd Qu.:0.4003 3rd Qu.:0.3179 416s Max. :0 Max. :0.4003 Max. :0.3343 416s > 416s > party::varimp(cf_party, conditional = TRUE) 416s Sepal.Length Sepal.Width Petal.Length Petal.Width 416s 0.0000000 0.0000000 0.2778571 0.1014286 416s > partykit::varimp(cf_partykit, risk = "misclass", conditional = TRUE) 416s Sepal.Width Petal.Length Petal.Width 416s 0.0000000 0.2782738 0.1171429 416s > 416s > ### mean aggregation 416s > set.seed(29) 416s > 416s > ### fit forest 416s > cf <- partykit::cforest(dist ~ speed, data = cars, ntree = 100) 416s > 416s > ### prediction; scale = TRUE introduced in 1.2-1 416s > pr <- predict(cf, newdata = cars[1,,drop = FALSE], type = "response", scale = TRUE) 416s > ### this is equivalent to 416s > w <- predict(cf, newdata = cars[1,,drop = FALSE], type = "weights") 416s > stopifnot(isTRUE(all.equal(pr, sum(w * cars$dist) / sum(w), 416s + check.attributes = FALSE))) 416s > 416s > ### check if this is the same as mean aggregation 416s > 416s > ### compute terminal node IDs for first obs 416s > nd1 <- predict(cf, newdata = cars[1,,drop = FALSE], type = "node") 416s > ### compute terminal nide IDs for all obs 416s > nd <- predict(cf, newdata = cars, type = "node") 416s > ### random forests weighs 416s > lw <- cf$weights 416s > 416s > ### compute mean predictions for each tree 416s > ### and extract mean for terminal node containing 416s > ### first observation 416s > np <- vector(mode = "list", length = length(lw)) 416s > m <- numeric(length(lw)) 416s > 416s > for (i in 1:length(lw)) { 416s + np[[i]] <- tapply(lw[[i]] * cars$dist, nd[[i]], sum) / 416s + tapply(lw[[i]], nd[[i]], sum) 416s + m[i] <- np[[i]][as.character(nd1[i])] 416s + } 416s > 416s > stopifnot(isTRUE(all.equal(mean(m), sum(w * cars$dist) / sum(w)))) 416s > 416s > ### check parallel variable importance (make this reproducible) 416s > if(.Platform$OS.type == "unix") { 416s + RNGkind("L'Ecuyer-CMRG") 416s + v1 <- partykit::varimp(cf_partykit, risk = "misclass", conditional = TRUE, cores = 2) 416s + v2 <- partykit::varimp(cf_partykit, risk = "misclass", conditional = TRUE, cores = 2) 416s + stopifnot(all.equal(v1, v2)) 416s + } 417s > 417s > ### check weights argument 417s > cf_partykit <- partykit::cforest(Species ~ ., data = iris, 417s + ntree = ntree, mtry = 4) 417s > w <- do.call("cbind", cf_partykit$weights) 417s > cf_2 <- partykit::cforest(Species ~ ., data = iris, 417s + ntree = ntree, mtry = 4, weights = w) 417s > stopifnot(max(abs(predict(cf_2, type = "prob") - 417s + predict(cf_partykit, type = "prob"))) < sqrt(.Machine$double.eps)) 417s > 417s > 418s BEGIN TEST regtest-ctree.R 418s 418s R version 4.3.2 (2023-10-31) -- "Eye Holes" 418s Copyright (C) 2023 The R Foundation for Statistical Computing 418s Platform: aarch64-unknown-linux-gnu (64-bit) 418s 418s R is free software and comes with ABSOLUTELY NO WARRANTY. 418s You are welcome to redistribute it under certain conditions. 418s Type 'license()' or 'licence()' for distribution details. 418s 418s R is a collaborative project with many contributors. 418s Type 'contributors()' for more information and 418s 'citation()' on how to cite R or R packages in publications. 418s 418s Type 'demo()' for some demos, 'help()' for on-line help, or 418s 'help.start()' for an HTML browser interface to help. 418s Type 'q()' to quit R. 418s 418s > suppressWarnings(RNGversion("3.5.2")) 418s > 418s > ## package 418s > library("partykit") 418s Loading required package: grid 418s Loading required package: libcoin 418s Loading required package: mvtnorm 419s > 419s > ## iris data 419s > data("iris", package = "datasets") 419s > irisct <- ctree(Species ~ ., data = iris) 419s > print(irisct) 419s 419s Model formula: 419s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 419s 419s Fitted party: 419s [1] root 419s | [2] Petal.Length <= 1.9: setosa (n = 50, err = 0.0%) 419s | [3] Petal.Length > 1.9 419s | | [4] Petal.Width <= 1.7 419s | | | [5] Petal.Length <= 4.8: versicolor (n = 46, err = 2.2%) 419s | | | [6] Petal.Length > 4.8: versicolor (n = 8, err = 50.0%) 419s | | [7] Petal.Width > 1.7: virginica (n = 46, err = 2.2%) 419s 419s Number of inner nodes: 3 419s Number of terminal nodes: 4 419s > table(fit = predict(irisct), true = iris$Species) 419s true 419s fit setosa versicolor virginica 419s setosa 50 0 0 419s versicolor 0 49 5 419s virginica 0 1 45 419s > 419s > ## airquality data 419s > data("airquality", package = "datasets") 419s > airq <- subset(airquality, !is.na(Ozone)) 419s > airqct <- ctree(Ozone ~ ., data = airq) 419s > print(airqct) 419s 419s Model formula: 419s Ozone ~ Solar.R + Wind + Temp + Month + Day 419s 419s Fitted party: 419s [1] root 419s | [2] Temp <= 82 419s | | [3] Wind <= 6.9: 55.600 (n = 10, err = 21946.4) 419s | | [4] Wind > 6.9 419s | | | [5] Temp <= 77: 18.479 (n = 48, err = 3956.0) 419s | | | [6] Temp > 77: 31.143 (n = 21, err = 4620.6) 419s | [7] Temp > 82 419s | | [8] Wind <= 10.3: 81.633 (n = 30, err = 15119.0) 419s | | [9] Wind > 10.3: 48.714 (n = 7, err = 1183.4) 419s 419s Number of inner nodes: 4 419s Number of terminal nodes: 5 419s > sum((airq$Ozone - predict(airqct))^2) 419s [1] 46825.35 419s > 419s > ### split in one variable only: Temp is selected freely in the root node 419s > ### but none of the other variables is allowed deeper in the tree 419s > airqct1 <- ctree(Ozone ~ ., data = airq, 419s + control = ctree_control(maxvar = 1L)) 419s > psplitids <- unique(do.call("c", 419s + nodeapply(node_party(airqct1), 419s + ids = nodeids(node_party(airqct1)), 419s + FUN = function(x) split_node(x)$varid))) 419s > stopifnot(length(psplitids) == 1L) 419s > 419s BEGIN TEST regtest-glmtree.R 419s 419s R version 4.3.2 (2023-10-31) -- "Eye Holes" 419s Copyright (C) 2023 The R Foundation for Statistical Computing 419s Platform: aarch64-unknown-linux-gnu (64-bit) 419s 419s R is free software and comes with ABSOLUTELY NO WARRANTY. 419s You are welcome to redistribute it under certain conditions. 419s Type 'license()' or 'licence()' for distribution details. 419s 419s R is a collaborative project with many contributors. 419s Type 'contributors()' for more information and 419s 'citation()' on how to cite R or R packages in publications. 419s 419s Type 'demo()' for some demos, 'help()' for on-line help, or 419s 'help.start()' for an HTML browser interface to help. 419s Type 'q()' to quit R. 419s 419s > suppressWarnings(RNGversion("3.5.2")) 419s > 419s > library("partykit") 419s Loading required package: grid 419s Loading required package: libcoin 419s Loading required package: mvtnorm 420s > 420s > set.seed(29) 420s > n <- 1000 420s > x <- runif(n) 420s > z <- runif(n) 420s > y <- rnorm(n, mean = x * c(-1, 1)[(z > 0.7) + 1], sd = 3) 420s > z_noise <- factor(sample(1:3, size = n, replace = TRUE)) 420s > d <- data.frame(y = y, x = x, z = z, z_noise = z_noise) 420s > 420s > 420s > fmla <- as.formula("y ~ x | z + z_noise") 420s > fmly <- gaussian() 420s > fit <- partykit:::glmfit 420s > 420s > # versions of the data 420s > d1 <- d 420s > d1$z <- signif(d1$z, digits = 1) 420s > 420s > k <- 20 420s > zs_noise <- matrix(rnorm(n*k), nrow = n) 420s > colnames(zs_noise) <- paste0("z_noise_", 1:k) 420s > d2 <- cbind(d, zs_noise) 420s > fmla2 <- as.formula(paste("y ~ x | z + z_noise +", 420s + paste0("z_noise_", 1:k, collapse = " + "))) 420s > 420s > 420s > d3 <- d2 420s > d3$z <- factor(sample(1:3, size = n, replace = TRUE, prob = c(0.1, 0.5, 0.4))) 420s > d3$y <- rnorm(n, mean = x * c(-1, 1)[(d3$z == 2) + 1], sd = 3) 420s > 420s > ## check weights 420s > w <- rep(1, n) 420s > w[1:10] <- 2 420s > (mw1 <- glmtree(formula = fmla, data = d, weights = w)) 421s Generalized linear model tree (family: gaussian) 421s 421s Model formula: 421s y ~ x | z + z_noise 421s 421s Fitted party: 421s [1] root 421s | [2] z <= 0.70311: n = 706 421s | (Intercept) x 421s | -0.1447422 -0.8138701 421s | [3] z > 0.70311: n = 304 421s | (Intercept) x 421s | 0.07006626 0.73278593 421s 421s Number of inner nodes: 1 421s Number of terminal nodes: 2 421s Number of parameters per node: 2 421s Objective function (negative log-likelihood): 2551.48 421s > (mw2 <- glmtree(formula = fmla, data = d, weights = w, caseweights = FALSE)) 423s Generalized linear model tree (family: gaussian) 423s 423s Model formula: 423s y ~ x | z + z_noise 423s 423s Fitted party: 423s [1] root 423s | [2] z <= 0.70311: n = 704 423s | (Intercept) x 423s | -0.1447422 -0.8138701 423s | [3] z > 0.70311: n = 296 423s | (Intercept) x 423s | 0.07006626 0.73278593 423s 423s Number of inner nodes: 1 423s Number of terminal nodes: 2 423s Number of parameters per node: 2 423s Objective function (negative log-likelihood): 2551.48 423s > 423s > 423s > 423s > ## check dfsplit 423s > (mmfluc2 <- mob(formula = fmla, data = d, fit = partykit:::glmfit)) 424s Model-based recursive partitioning (partykit:::glmfit) 424s 424s Model formula: 424s y ~ x | z + z_noise 424s 424s Fitted party: 424s [1] root 424s | [2] z <= 0.70311: n = 704 424s | (Intercept) x 424s | -0.1619978 -0.7896293 424s | [3] z > 0.70311: n = 296 424s | (Intercept) x 424s | 0.08683535 0.65598287 424s 424s Number of inner nodes: 1 424s Number of terminal nodes: 2 424s Number of parameters per node: 2 424s Objective function: 2551.673 424s > (mmfluc3 <- glmtree(formula = fmla, data = d)) 425s Generalized linear model tree (family: gaussian) 425s 425s Model formula: 425s y ~ x | z + z_noise 425s 425s Fitted party: 425s [1] root 425s | [2] z <= 0.70311: n = 704 425s | (Intercept) x 425s | -0.1619978 -0.7896293 425s | [3] z > 0.70311: n = 296 425s | (Intercept) x 425s | 0.08683535 0.65598287 425s 425s Number of inner nodes: 1 425s Number of terminal nodes: 2 425s Number of parameters per node: 2 425s Objective function (negative log-likelihood): 2551.673 425s > (mmfluc3_dfsplit <- glmtree(formula = fmla, data = d, dfsplit = 10)) 425s Generalized linear model tree (family: gaussian) 425s 425s Model formula: 425s y ~ x | z + z_noise 425s 425s Fitted party: 425s [1] root 425s | [2] z <= 0.70311: n = 704 425s | (Intercept) x 425s | -0.1619978 -0.7896293 425s | [3] z > 0.70311: n = 296 425s | (Intercept) x 425s | 0.08683535 0.65598287 425s 425s Number of inner nodes: 1 425s Number of terminal nodes: 2 425s Number of parameters per node: 2 425s Objective function (negative log-likelihood): 2551.673 425s > Loading required package: strucchange 426s 426s > 426s > ## check tests 426s > if (require("strucchange")) 426s + print(sctest(mmfluc3, node = 1)) # does not yet work 426s Loading required package: zoo 426s 426s Attaching package: ‘zoo’ 426s 426s The following objects are masked from ‘package:base’: 426s 426s as.Date, as.Date.numeric 426s 426s Loading required package: sandwich 426s z z_noise 426s statistic 2.292499e+01 0.6165335 426s p.value 7.780038e-04 0.9984952 426s > 426s > x <- mmfluc3 426s > (tst3 <- nodeapply(x, ids = nodeids(x), function(n) n$info$criterion)) 426s $`1` 426s NULL 426s 426s $`2` 426s NULL 426s 426s $`3` 426s NULL 426s 426s > 426s > 426s > 426s > 426s > ## check logLik and AIC 426s > logLik(mmfluc2) 426s 'log Lik.' -2551.673 (df=7) 426s > logLik(mmfluc3) 426s 'log Lik.' -2551.673 (df=7) 426s > logLik(mmfluc3_dfsplit) 426s 'log Lik.' -2551.673 (df=16) 426s > logLik(glm(y ~ x, data = d)) 426s 'log Lik.' -2563.694 (df=3) 426s > 426s > AIC(mmfluc3) 426s [1] 5117.347 426s > AIC(mmfluc3_dfsplit) 426s [1] 5135.347 426s > 426s > ## check pruning 426s > pr2 <- prune.modelparty(mmfluc2) 426s > AIC(mmfluc2) 426s [1] 5117.347 426s > AIC(pr2) 426s [1] 5117.347 426s > 426s > mmfluc_dfsplit3 <- glmtree(formula = fmla, data = d, alpha = 0.5, dfsplit = 3) 427s > mmfluc_dfsplit4 <- glmtree(formula = fmla, data = d, alpha = 0.5, dfsplit = 4) 428s > pr_dfsplit3 <- prune.modelparty(mmfluc_dfsplit3) 428s > pr_dfsplit4 <- prune.modelparty(mmfluc_dfsplit4) 428s > AIC(mmfluc_dfsplit3) 428s [1] 5142.774 428s > AIC(mmfluc_dfsplit4) 428s [1] 5156.774 428s > AIC(pr_dfsplit3) 428s [1] 5142.774 428s > AIC(pr_dfsplit4) 428s [1] 5124.456 428s > 428s > width(mmfluc_dfsplit3) 428s [1] 8 428s > width(mmfluc_dfsplit4) 428s [1] 8 428s > width(pr_dfsplit3) 428s [1] 8 428s > width(pr_dfsplit4) 428s [1] 3 428s > 428s > ## check inner and terminal 428s > options <- list(NULL, 428s + "object", 428s + "estfun", 428s + c("object", "estfun")) 428s > 428s > arguments <- list("inner", 428s + "terminal", 428s + c("inner", "terminal")) 428s > 428s > 428s > for (o in options) { 428s + print(o) 428s + x <- glmtree(formula = fmla, data = d, inner = o) 428s + str(nodeapply(x, ids = nodeids(x), function(n) n$info[c("object", "estfun")]), 2) 428s + } 428s NULL 429s List of 3 429s $ 1:List of 2 429s ..$ NA: NULL 429s ..$ NA: NULL 429s $ 2:List of 2 429s ..$ object:List of 24 429s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 429s ..$ NA : NULL 429s $ 3:List of 2 429s ..$ object:List of 24 429s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 429s ..$ NA : NULL 429s [1] "object" 430s List of 3 430s $ 1:List of 2 430s ..$ object:List of 24 430s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 430s ..$ NA : NULL 430s $ 2:List of 2 430s ..$ object:List of 24 430s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 430s ..$ NA : NULL 430s $ 3:List of 2 430s ..$ object:List of 24 430s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 430s ..$ NA : NULL 430s [1] "estfun" 431s List of 3 432s $ 1:List of 2 432s ..$ NA : NULL 432s ..$ estfun: num [1:1000, 1:2] -0.1375 -0.0583 -0.0553 0.1043 -0.0744 ... 432s .. ..- attr(*, "dimnames")=List of 2 432s $ 2:List of 2 432s ..$ object:List of 24 432s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 432s ..$ NA : NULL 432s $ 3:List of 2 432s ..$ object:List of 24 432s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 432s ..$ NA : NULL 432s [1] "object" "estfun" 432s List of 3 433s $ 1:List of 2 433s ..$ object:List of 24 433s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 433s ..$ estfun: num [1:1000, 1:2] -0.1375 -0.0583 -0.0553 0.1043 -0.0744 ... 433s .. ..- attr(*, "dimnames")=List of 2 433s $ 2:List of 2 433s ..$ object:List of 24 433s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 433s ..$ NA : NULL 433s $ 3:List of 2 433s ..$ object:List of 24 433s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 433s ..$ NA : NULL 433s > 433s > for (o in options) { 433s + print(o) 433s + x <- glmtree(formula = fmla, data = d, terminal = o) 433s + str(nodeapply(x, ids = nodeids(x), function(n) n$info[c("object", "estfun")]), 2) 433s + } 433s NULL 433s List of 3 433s $ 1:List of 2 433s ..$ NA: NULL 433s ..$ NA: NULL 433s $ 2:List of 2 433s ..$ NA: NULL 433s ..$ NA: NULL 433s $ 3:List of 2 433s ..$ NA: NULL 433s ..$ NA: NULL 433s [1] "object" 434s List of 3 434s $ 1:List of 2 434s ..$ object:List of 24 434s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 434s ..$ NA : NULL 435s $ 2:List of 2 435s ..$ object:List of 24 435s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 435s ..$ NA : NULL 435s $ 3:List of 2 435s ..$ object:List of 24 435s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 435s ..$ NA : NULL 435s [1] "estfun" 436s List of 3 436s $ 1:List of 2 436s ..$ NA : NULL 436s ..$ estfun: num [1:1000, 1:2] -0.1375 -0.0583 -0.0553 0.1043 -0.0744 ... 436s .. ..- attr(*, "dimnames")=List of 2 436s $ 2:List of 2 436s ..$ NA : NULL 436s ..$ estfun: num [1:704, 1:2] -0.1291 0.5104 -0.0603 -0.1868 -0.0981 ... 436s .. ..- attr(*, "dimnames")=List of 2 436s $ 3:List of 2 436s ..$ NA : NULL 436s ..$ estfun: num [1:296, 1:2] -0.1053 -0.0877 0.0544 -0.1581 0.43 ... 436s .. ..- attr(*, "dimnames")=List of 2 436s [1] "object" "estfun" 437s List of 3 437s $ 1:List of 2 437s ..$ object:List of 24 437s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 437s ..$ estfun: num [1:1000, 1:2] -0.1375 -0.0583 -0.0553 0.1043 -0.0744 ... 437s .. ..- attr(*, "dimnames")=List of 2 437s $ 2:List of 2 437s ..$ object:List of 24 437s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 437s ..$ estfun: num [1:704, 1:2] -0.1291 0.5104 -0.0603 -0.1868 -0.0981 ... 437s .. ..- attr(*, "dimnames")=List of 2 437s $ 3:List of 2 437s ..$ object:List of 24 437s .. ..- attr(*, "class")= chr [1:2] "glm" "lm" 437s ..$ estfun: num [1:296, 1:2] -0.1053 -0.0877 0.0544 -0.1581 0.43 ... 437s .. ..- attr(*, "dimnames")=List of 2 437s > 437s > 437s > ## check model 437s > m_mt <- glmtree(formula = fmla, data = d, model = TRUE) 438s > m_mf <- glmtree(formula = fmla, data = d, model = FALSE) 439s > 439s > dim(m_mt$data) 439s [1] 1000 4 439s > dim(m_mf$data) 439s [1] 0 4 439s > 439s > 439s > ## check multiway 439s > (m_mult <- glmtree(formula = fmla2, data = d3, catsplit = "multiway", minsize = 80)) 439s Generalized linear model tree (family: gaussian) 439s 439s Model formula: 439s y ~ x | z + z_noise + z_noise_1 + z_noise_2 + z_noise_3 + z_noise_4 + 439s z_noise_5 + z_noise_6 + z_noise_7 + z_noise_8 + z_noise_9 + 439s z_noise_10 + z_noise_11 + z_noise_12 + z_noise_13 + z_noise_14 + 439s z_noise_15 + z_noise_16 + z_noise_17 + z_noise_18 + z_noise_19 + 439s z_noise_20 439s 439s Fitted party: 439s [1] root 439s | [2] z in 1: n = 76 439s | (Intercept) x 439s | 0.9859847 -3.2600047 439s | [3] z in 2: n = 537 439s | (Intercept) x 439s | -0.06970187 1.12305074 439s | [4] z in 3: n = 387 439s | (Intercept) x 439s | 0.3824392 -1.8337151 439s 439s Number of inner nodes: 1 439s Number of terminal nodes: 3 439s Number of parameters per node: 2 439s Objective function (negative log-likelihood): 2511.927 439s > 439s > 439s > ## check parm 439s > fmla_p <- as.formula("y ~ x + z_noise + z_noise_1 | z + z_noise_2") 439s > (m_interc <- glmtree(formula = fmla_p, data = d2, parm = 1)) 440s Generalized linear model tree (family: gaussian) 440s 440s Model formula: 440s y ~ x + z_noise + z_noise_1 | z + z_noise_2 440s 440s Fitted party: 440s [1] root 440s | [2] z <= 0.65035: n = 644 440s | (Intercept) x z_noise2 z_noise3 z_noise_1 440s | -0.05585503 -1.01257554 0.34044520 -0.16384987 0.24197601 440s | [3] z > 0.65035: n = 356 440s | (Intercept) x z_noise2 z_noise3 z_noise_1 440s | 0.06411865 0.78733976 -0.67811149 -0.14240432 -0.01239154 440s 440s Number of inner nodes: 1 440s Number of terminal nodes: 2 440s Number of parameters per node: 5 440s Objective function (negative log-likelihood): 2548.32 440s > 440s > (m_p3 <- glmtree(formula = fmla_p, data = d2, parm = 3)) 440s Generalized linear model tree (family: gaussian) 440s 440s Model formula: 440s y ~ x + z_noise + z_noise_1 | z + z_noise_2 440s 440s Fitted party: 440s [1] root: n = 1000 440s (Intercept) x z_noise2 z_noise3 z_noise_1 440s -0.058855295 -0.340314311 -0.008404682 -0.109839080 0.154798281 440s 440s Number of inner nodes: 0 440s Number of terminal nodes: 1 440s Number of parameters per node: 5 440s Objective function (negative log-likelihood): 2562.32 440s > 440s > 440s > ## check trim 440s > (m_tt <- glmtree(formula = fmla, data = d, trim = 0.2)) 441s Generalized linear model tree (family: gaussian) 441s 441s Model formula: 441s y ~ x | z + z_noise 441s 441s Fitted party: 441s [1] root 441s | [2] z <= 0.70311: n = 704 441s | (Intercept) x 441s | -0.1619978 -0.7896293 441s | [3] z > 0.70311: n = 296 441s | (Intercept) x 441s | 0.08683535 0.65598287 441s 441s Number of inner nodes: 1 441s Number of terminal nodes: 2 441s Number of parameters per node: 2 441s Objective function (negative log-likelihood): 2551.673 441s > 441s > (m_tf <- glmtree(formula = fmla, data = d, trim = 300, minsize = 300)) 442s Generalized linear model tree (family: gaussian) 442s 442s Model formula: 442s y ~ x | z + z_noise 442s 442s Fitted party: 442s [1] root 442s | [2] z <= 0.6892: n = 691 442s | (Intercept) x 442s | -0.1778199 -0.7692901 442s | [3] z > 0.6892: n = 309 442s | (Intercept) x 442s | 0.1065746 0.5562243 442s 442s Number of inner nodes: 1 442s Number of terminal nodes: 2 442s Number of parameters per node: 2 442s Objective function (negative log-likelihood): 2552.12 442s > 442s > 442s > 442s > ## check breakties 442s > m_bt <- glmtree(formula = fmla, data = d1, breakties = TRUE) 442s > m_df <- glmtree(formula = fmla, data = d1, breakties = FALSE) 442s > 442s > all.equal(m_bt, m_df, check.environment = FALSE) 442s [1] "Component “node”: Component “kids”: Component 1: Component 5: Component 6: Mean relative difference: 0.1237503" 442s [2] "Component “node”: Component “kids”: Component 2: Component 5: Component 5: Mean relative difference: 0.1746109" 442s [3] "Component “node”: Component “kids”: Component 2: Component 5: Component 6: Mean relative difference: 0.0443985" 442s [4] "Component “node”: Component “info”: Component “p.value”: Mean relative difference: 1.100407" 442s [5] "Component “node”: Component “info”: Component “test”: Mean relative difference: 0.07721086" 442s [6] "Component “info”: Component “call”: target, current do not match when deparsed" 442s [7] "Component “info”: Component “control”: Component “breakties”: 1 element mismatch" 442s > 442s > unclass(m_bt)$node$info$criterion 442s NULL 442s > unclass(m_df)$node$info$criterion 442s NULL 442s > 442s > 442s > ### example from mob vignette 442s > data("PimaIndiansDiabetes", package = "mlbench") 442s > 442s > logit <- function(y, x, start = NULL, weights = NULL, offset = NULL, ...) { 442s + glm(y ~ 0 + x, family = binomial, start = start, ...) 442s + } 442s > 442s > pid_formula <- diabetes ~ glucose | pregnant + pressure + triceps + 442s + insulin + mass + pedigree + age 442s > 442s > pid_tree <- mob(pid_formula, data = PimaIndiansDiabetes, fit = logit) 443s > pid_tree 443s Model-based recursive partitioning (logit) 443s 443s Model formula: 443s diabetes ~ glucose | pregnant + pressure + triceps + insulin + 443s mass + pedigree + age 443s 443s Fitted party: 443s [1] root 443s | [2] mass <= 26.3: n = 167 443s | x(Intercept) xglucose 443s | -9.95150963 0.05870786 443s | [3] mass > 26.3 443s | | [4] age <= 30: n = 304 443s | | x(Intercept) xglucose 443s | | -6.70558554 0.04683748 443s | | [5] age > 30: n = 297 443s | | x(Intercept) xglucose 443s | | -2.77095386 0.02353582 443s 443s Number of inner nodes: 2 443s Number of terminal nodes: 3 443s Number of parameters per node: 2 443s Objective function: 355.4578 443s > nodeapply(pid_tree, ids = nodeids(pid_tree), function(n) n$info$criterion) 443s $`1` 443s NULL 443s 443s $`2` 443s NULL 443s 443s $`3` 443s NULL 443s 443s $`4` 443s NULL 443s 443s $`5` 443s NULL 443s 443s > 443s > 443s > 443s > 443s BEGIN TEST regtest-honesty.R 443s 443s R version 4.3.2 (2023-10-31) -- "Eye Holes" 443s Copyright (C) 2023 The R Foundation for Statistical Computing 443s Platform: aarch64-unknown-linux-gnu (64-bit) 443s 443s R is free software and comes with ABSOLUTELY NO WARRANTY. 443s You are welcome to redistribute it under certain conditions. 443s Type 'license()' or 'licence()' for distribution details. 443s 443s R is a collaborative project with many contributors. 443s Type 'contributors()' for more information and 443s 'citation()' on how to cite R or R packages in publications. 443s 443s Type 'demo()' for some demos, 'help()' for on-line help, or 443s 'help.start()' for an HTML browser interface to help. 443s Type 'q()' to quit R. 443s 443s > 443s > library("partykit") 443s Loading required package: grid 443s Loading required package: libcoin 443s Loading required package: mvtnorm 444s > 444s > n <- 100 444s > x <- runif(n) 444s > y <- rnorm(n, mean = sin(x), sd = .1) 444s > s <- gl(4, n / 4) 444s > 444s > set.seed(29) 444s > ### estimate with honesty 444s > cf_ss <- cforest(y ~ x, strata = s, ntree = 5, mtry = 1, 444s + perturb = list(replace = FALSE, fraction = c(.5, .5))) 444s > ### sample used for tree induction 444s > stopifnot(sum(tapply(cf_ss$weights[[1]], s, sum)) == n / 2) 444s > ### sample used for parameter estimation 444s > stopifnot(sum(tapply(cf_ss$honest_weights[[1]], s, sum)) == n / 2) 444s > 444s > p <- predict(cf_ss) 444s > 444s > set.seed(29) 444s > ### w/o honesty 444s > cf_ss2 <- cforest(y ~ x, strata = s, ntree = 5, mtry = 1, 444s + perturb = list(replace = FALSE, fraction = .5)) 444s > 444s > stopifnot(sum(tapply(cf_ss2$weights[[1]], s, sum)) == n / 2) 444s > 444s > # random diffs also on other platforms 444s > #if (.Platform$OS.type != "windows") 444s > # stopifnot(all.equal(cf_ss$nodes, cf_ss2$nodes)) 444s > stopifnot(all.equal(cf_ss$weights, cf_ss2$weights)) 444s > stopifnot(all.equal(predict(cf_ss, type = "node"), 444s + predict(cf_ss2, type = "node"))) 444s > 444s > tmp <- cf_ss2 444s > tmp$weights <- lapply(tmp$weights, function(x) 1L - x) 444s > pp <- predict(tmp) 444s > 444s > stopifnot(all.equal(p, pp)) 444s > 444s > ### bootstrap ignores honesty 444s > cf_bs <- cforest(y ~ x, strata = s, ntree = 5, 444s + perturb = list(replace = TRUE, fraction = c(.5, .5))) 444s > 444s > stopifnot(sum(tapply(cf_bs$weights[[1]], s, sum)) == n) 444s > stopifnot(is.null(cf_bs$honest_weights)) 444s > 444s BEGIN TEST regtest-lmtree.R 444s 444s R version 4.3.2 (2023-10-31) -- "Eye Holes" 444s Copyright (C) 2023 The R Foundation for Statistical Computing 444s Platform: aarch64-unknown-linux-gnu (64-bit) 444s 444s R is free software and comes with ABSOLUTELY NO WARRANTY. 444s You are welcome to redistribute it under certain conditions. 444s Type 'license()' or 'licence()' for distribution details. 444s 444s R is a collaborative project with many contributors. 444s Type 'contributors()' for more information and 444s 'citation()' on how to cite R or R packages in publications. 444s 444s Type 'demo()' for some demos, 'help()' for on-line help, or 444s 'help.start()' for an HTML browser interface to help. 444s Type 'q()' to quit R. 444s 444s > suppressWarnings(RNGversion("3.5.2")) 444s > 444s > library("partykit") 444s Loading required package: grid 444s Loading required package: libcoin 444s Loading required package: mvtnorm 445s > 445s > set.seed(29) 445s > n <- 1000 445s > x <- runif(n) 445s > z <- runif(n) 445s > y <- rnorm(n, mean = x * c(-1, 1)[(z > 0.7) + 1], sd = 3) 445s > z_noise <- factor(sample(1:3, size = n, replace = TRUE)) 445s > d <- data.frame(y = y, x = x, z = z, z_noise = z_noise) 445s > 445s > 445s > fmla <- as.formula("y ~ x | z + z_noise") 445s > 445s > (m_mob <- mob(formula = fmla, data = d, fit = partykit:::lmfit)) 445s Model-based recursive partitioning (partykit:::lmfit) 445s 445s Model formula: 445s y ~ x | z + z_noise 445s 445s Fitted party: 445s [1] root 445s | [2] z <= 0.70311: n = 704 445s | (Intercept) x 445s | -0.1619978 -0.7896293 445s | [3] z > 0.70311: n = 296 445s | (Intercept) x 445s | 0.08683535 0.65598287 445s 445s Number of inner nodes: 1 445s Number of terminal nodes: 2 445s Number of parameters per node: 2 445s Objective function: 9635.95 445s > (m_lm2 <- lmtree(formula = fmla, data = d)) 446s Linear model tree 446s 446s Model formula: 446s y ~ x | z + z_noise 446s 446s Fitted party: 446s [1] root 446s | [2] z <= 0.70311: n = 704 446s | (Intercept) x 446s | -0.1619978 -0.7896293 446s | [3] z > 0.70311: n = 296 446s | (Intercept) x 446s | 0.08683535 0.65598287 446s 446s Number of inner nodes: 1 446s Number of terminal nodes: 2 446s Number of parameters per node: 2 446s Objective function (residual sum of squares): 9635.95 446s > 446s > 446s > mods <- nodeapply(m_lm2, ids = nodeids(m_lm2, terminal = TRUE), function(x) x$info$object) 446s > sum(sapply(mods, function(x) sum(x$residuals^2))) 446s [1] 9635.95 446s > 446s > 446s BEGIN TEST regtest-nmax.R 446s 446s R version 4.3.2 (2023-10-31) -- "Eye Holes" 446s Copyright (C) 2023 The R Foundation for Statistical Computing 446s Platform: aarch64-unknown-linux-gnu (64-bit) 446s 446s R is free software and comes with ABSOLUTELY NO WARRANTY. 446s You are welcome to redistribute it under certain conditions. 446s Type 'license()' or 'licence()' for distribution details. 446s 446s R is a collaborative project with many contributors. 446s Type 'contributors()' for more information and 446s 'citation()' on how to cite R or R packages in publications. 446s 446s Type 'demo()' for some demos, 'help()' for on-line help, or 446s 'help.start()' for an HTML browser interface to help. 446s Type 'q()' to quit R. 446s 446s > suppressWarnings(RNGversion("3.5.2")) 446s > 446s > library("partykit") 446s Loading required package: grid 446s Loading required package: libcoin 446s Loading required package: mvtnorm 447s > 447s > set.seed(29) 447s > n <- 1000 447s > z <- runif(n) 447s > y <- rnorm(n, mean = c(-1, 1)[(z > 0.5) + 1], sd = 3) 447s > d <- data.frame(y = y, y2 = factor(y > median(y)), 447s + z = z) 447s > 447s > c1 <- ctree(y2 ~ z, data = d, control = ctree_control(nmax = Inf, alpha = .5)) 447s > c2 <- ctree(y2 ~ z, data = d, control = ctree_control(nmax = 25, alpha = .5)) 447s > c3 <- ctree(y2 ~ z, data = d, control = ctree_control(nmax = nrow(d), alpha = .5)) 447s > c4 <- ctree(y2 ~ z, data = d, control = ctree_control(nmax = 100, alpha = .5)) 447s > 447s > all.equal(predict(c1, type = "node"), predict(c3, type = "node")) 447s [1] TRUE 447s > 447s > p1 <- predict(c1, type = "prob") 447s > p2 <- predict(c2, type = "prob") 447s > p3 <- predict(c3, type = "prob") 447s > p4 <- predict(c4, type = "prob") 447s > 447s > ### binomial log-lik 447s > sum(log(p1[cbind(1:nrow(d), unclass(d$y2))])) 447s [1] -675.3508 447s > sum(log(p2[cbind(1:nrow(d), unclass(d$y2))])) 447s [1] -676.0943 447s > sum(log(p3[cbind(1:nrow(d), unclass(d$y2))])) 447s [1] -675.3508 447s > sum(log(p4[cbind(1:nrow(d), unclass(d$y2))])) 447s [1] -676.0943 447s > 447s > c1 <- ctree(y ~ z, data = d, control = ctree_control(nmax = c("yx" = Inf, "z" = 25), alpha = .5)) 447s > 447s BEGIN TEST regtest-node.R 447s 447s R version 4.3.2 (2023-10-31) -- "Eye Holes" 447s Copyright (C) 2023 The R Foundation for Statistical Computing 447s Platform: aarch64-unknown-linux-gnu (64-bit) 447s 447s R is free software and comes with ABSOLUTELY NO WARRANTY. 447s You are welcome to redistribute it under certain conditions. 447s Type 'license()' or 'licence()' for distribution details. 447s 447s R is a collaborative project with many contributors. 447s Type 'contributors()' for more information and 447s 'citation()' on how to cite R or R packages in publications. 447s 447s Type 'demo()' for some demos, 'help()' for on-line help, or 447s 'help.start()' for an HTML browser interface to help. 447s Type 'q()' to quit R. 447s 447s > suppressWarnings(RNGversion("3.5.2")) 447s > 447s > library("partykit") 447s Loading required package: grid 447s Loading required package: libcoin 447s Loading required package: mvtnorm 448s > set.seed(1) 448s > 448s > mysplit <- function(x) partysplit(1L, breaks = as.double(x)) 448s > x <- vector(mode = "list", length = 5) 448s > x[[1]] <- list(id = 1L, split = mysplit(1 / 3), kids = 2:3, info = "one") 448s > x[[2]] <- list(id = 2L, info = "two") 448s > x[[3]] <- list(id = 3L, split = mysplit(2 / 3), kids = 4:5, info = "three") 448s > x[[4]] <- list(id = 4L, info = "four") 448s > x[[5]] <- list(id = 5L, info = "five") 448s > 448s > rx <- as.partynode(x) 448s > stopifnot(identical(as.list(rx), x)) 448s > 448s > dat <- data.frame(x = runif(100)) 448s > kidids_node(rx, dat) 448s [1] 1 2 2 2 1 2 2 2 2 1 1 1 2 2 2 2 2 2 2 2 2 1 2 1 1 2 1 2 2 2 2 2 2 1 2 2 2 448s [38] 1 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 1 1 2 2 2 2 1 2 1 2 1 2 2 1 2 2 2 2 2 448s [75] 2 2 2 2 2 2 2 2 2 1 2 1 2 1 1 1 1 1 2 2 2 2 2 2 2 2 448s > 448s BEGIN TEST regtest-party-random.R 448s 448s R version 4.3.2 (2023-10-31) -- "Eye Holes" 448s Copyright (C) 2023 The R Foundation for Statistical Computing 448s Platform: aarch64-unknown-linux-gnu (64-bit) 448s 448s R is free software and comes with ABSOLUTELY NO WARRANTY. 448s You are welcome to redistribute it under certain conditions. 448s Type 'license()' or 'licence()' for distribution details. 448s 448s R is a collaborative project with many contributors. 448s Type 'contributors()' for more information and 448s 'citation()' on how to cite R or R packages in publications. 448s 448s Type 'demo()' for some demos, 'help()' for on-line help, or 448s 'help.start()' for an HTML browser interface to help. 448s Type 'q()' to quit R. 448s 448s > suppressWarnings(RNGversion("3.5.2")) 448s > 448s > ## packages 448s > library("partykit") 448s Loading required package: grid 448s Loading required package: libcoin 448s Loading required package: mvtnorm 449s > library("rpart") 449s > 449s > ## data-generating process 449s > dgp <- function(n) 449s + data.frame(y = gl(4, n), x1 = rnorm(4 * n), x2 = rnorm(4 * n)) 449s > 449s > ## rpart check 449s > learn <- dgp(100) 449s > fit <- as.party(rpart(y ~ ., data = learn)) 449s > test <- dgp(100000) 449s > system.time(id <- fitted_node(node_party(fit), test)) 449s user system elapsed 449s 0.100 0.011 0.111 449s > system.time(yhat <- predict_party(fit, id = id, newdata = test)) 450s user system elapsed 450s 0.030 0.004 0.035 450s > 450s > ### predictions in info slots 450s > tmp <- data.frame(x = rnorm(100)) 450s > pfit <- party(node = partynode(1L, split = partysplit(1L, breaks = 0), 450s + kids = list(partynode(2L, info = -0.5), partynode(3L, info = 0.5))), data = tmp) 450s > pfit 450s [1] root 450s | [2] x <= 0: -0.5 450s | [3] x > 0: 0.5 450s > p <- predict(pfit, newdata = tmp) 450s > p 450s 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 450s 2 2 3 2 2 3 2 3 2 3 2 3 2 3 3 3 2 2 3 2 450s 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 450s 3 2 2 3 2 2 2 3 3 3 3 3 2 3 2 2 2 2 3 2 450s 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 450s 3 3 2 2 2 2 2 3 3 3 2 3 2 3 3 2 2 2 2 3 450s 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 450s 3 3 2 3 2 3 3 3 2 3 3 3 2 3 3 2 2 3 2 2 450s 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 450s 3 2 2 2 3 2 3 2 3 3 3 2 2 3 3 3 2 3 2 2 450s > table(p, sign(tmp$x)) 450s 450s p -1 1 450s 2 51 0 450s 3 0 49 450s > 450s BEGIN TEST regtest-party.R 450s 450s R version 4.3.2 (2023-10-31) -- "Eye Holes" 450s Copyright (C) 2023 The R Foundation for Statistical Computing 450s Platform: aarch64-unknown-linux-gnu (64-bit) 450s 450s R is free software and comes with ABSOLUTELY NO WARRANTY. 450s You are welcome to redistribute it under certain conditions. 450s Type 'license()' or 'licence()' for distribution details. 450s 450s R is a collaborative project with many contributors. 450s Type 'contributors()' for more information and 450s 'citation()' on how to cite R or R packages in publications. 450s 450s Type 'demo()' for some demos, 'help()' for on-line help, or 450s 'help.start()' for an HTML browser interface to help. 450s Type 'q()' to quit R. 450s 450s > suppressWarnings(RNGversion("3.5.2")) 450s > 450s > ## load package and fix seed 450s > library("partykit") 450s Loading required package: grid 450s Loading required package: libcoin 450s Loading required package: mvtnorm 451s > set.seed(1) 451s > 451s > ## rpart: kyphosis data 451s > library("rpart") 451s > data("kyphosis", package = "rpart") 451s > fit <- rpart(Kyphosis ~ Age + Number + Start, data = kyphosis) 451s > pfit <- as.party(fit) 451s > all(predict(pfit, newdata = kyphosis, type = "node") == fit$where) 451s [1] TRUE 451s > 451s > ## J48: iris data 451s > if (require("RWeka")) { 451s + data("iris", package = "datasets") 451s + itree <- J48(Species ~ ., data = iris) 451s + pitree <- as.party(itree) 451s + Loading required package: RWeka 451s Warning message: 451s In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : 451s there is no package called ‘RWeka’ 451s stopifnot(all(predict(pitree) == predict(pitree, newdata = iris[, 3:4]))) 451s + 451s + print(all.equal(predict(itree, type = "prob", newdata = iris), 451s + predict(pitree, type = "prob", newdata = iris))) 451s + print(all.equal(predict(itree, newdata = iris), 451s + predict(pitree, newdata = iris))) 451s + 451s + ## rpart/J48: GlaucomaM data 451s + data("GlaucomaM", package = "TH.data") 451s + w <- runif(nrow(GlaucomaM)) 451s + fit <- rpart(Class ~ ., data = GlaucomaM, weights = w) 451s + pfit <- as.party(fit) 451s + print(all(predict(pfit, type = "node") == fit$where)) 451s + tmp <- GlaucomaM[sample(1:nrow(GlaucomaM), 100),] 451s + print(all.equal(predict(fit, type = "prob", newdata = tmp), predict(pfit, type = "prob", newdata = tmp))) 451s + print(all.equal(predict(fit, type = "class", newdata = tmp), predict(pfit, newdata = tmp))) 451s + itree <- J48(Class ~ ., data = GlaucomaM) 451s + pitree <- as.party(itree) 451s + print(all.equal(predict(itree, newdata = tmp, type = "prob"), predict(pitree, newdata = tmp, type = "prob"))) 451s + } 451s > 451s > ## rpart: airquality data 451s > data("airquality") 451s > aq <- subset(airquality, !is.na(Ozone)) 451s > w <- runif(nrow(aq), max = 3) 451s > aqr <- rpart(Ozone ~ ., data = aq, weights = w) 451s > aqp <- as.party(aqr) 451s > tmp <- subset(airquality, is.na(Ozone)) 451s > all.equal(predict(aqr, newdata = tmp), predict(aqp, newdata = tmp)) 451s [1] TRUE 451s > 451s > ## rpart: GBSG2 data 451s > data("GBSG2", package = "TH.data") 451s > library("survival") 451s > fit <- rpart(Surv(time, cens) ~ ., data = GBSG2) 451s > pfit <- as.party(fit) 451s > pfit$fitted 451s (fitted) (response) 451s 1 6 1814 451s 2 8 2018 451s 3 8 712 451s 4 8 1807 451s 5 6 772 451s 6 11 448 451s 7 3 2172+ 451s 8 5 2161+ 451s 9 11 471 451s 10 10 2014+ 451s 11 10 577 451s 12 10 184 451s 13 5 1840+ 451s 14 6 1842+ 451s 15 5 1821+ 451s 16 5 1371 451s 17 8 707 451s 18 5 1743+ 451s 19 5 1781+ 451s 20 8 865 451s 21 6 1684 451s 22 5 1701+ 451s 23 6 1701+ 451s 24 6 1693+ 451s 25 11 379 451s 26 5 1105 451s 27 6 548 451s 28 8 1296 451s 29 6 1483+ 451s 30 6 1570+ 451s 31 6 1469+ 451s 32 6 1472+ 451s 33 5 1342+ 451s 34 6 1349+ 451s 35 8 1162 451s 36 6 1342+ 451s 37 11 797 451s 38 8 1232+ 451s 39 6 1230+ 451s 40 8 1205+ 451s 41 8 1090+ 451s 42 8 1095+ 451s 43 6 449 451s 44 6 972+ 451s 45 6 825+ 451s 46 6 2438+ 451s 47 6 2233+ 451s 48 11 286 451s 49 8 1861+ 451s 50 8 1080 451s 51 6 1521 451s 52 6 1693+ 451s 53 6 1528 451s 54 10 169 451s 55 8 272 451s 56 6 731 451s 57 8 2059+ 451s 58 8 1853+ 451s 59 10 1854+ 451s 60 8 1645+ 451s 61 11 544 451s 62 8 1666+ 451s 63 6 353 451s 64 8 1791+ 451s 65 6 1685+ 451s 66 3 191 451s 67 10 370 451s 68 8 173 451s 69 11 242 451s 70 6 420 451s 71 8 438 451s 72 6 1624+ 451s 73 10 1036 451s 74 11 359 451s 75 8 171 451s 76 11 959 451s 77 6 1351+ 451s 78 10 486 451s 79 11 525 451s 80 5 762 451s 81 10 175 451s 82 3 1195+ 451s 83 10 338 451s 84 8 1125+ 451s 85 8 916+ 451s 86 6 972+ 451s 87 3 867+ 451s 88 10 249 451s 89 11 281 451s 90 6 758+ 451s 91 11 377 451s 92 6 1976+ 451s 93 5 2539+ 451s 94 6 2467+ 451s 95 5 876 451s 96 5 2132+ 451s 97 11 426 451s 98 5 554 451s 99 8 1246 451s 100 5 1926+ 451s 101 11 1207 451s 102 8 1852+ 451s 103 8 1174 451s 104 8 1250+ 451s 105 6 530 451s 106 10 1502+ 451s 107 5 1364+ 451s 108 8 1170 451s 109 6 1729+ 451s 110 5 1642+ 451s 111 5 1218 451s 112 3 1358+ 451s 113 11 360 451s 114 5 550 451s 115 8 857+ 451s 116 8 768+ 451s 117 6 858+ 451s 118 6 770+ 451s 119 10 679 451s 120 6 1164 451s 121 6 350 451s 122 6 578 451s 123 6 1460 451s 124 6 1434+ 451s 125 6 1763 451s 126 6 889 451s 127 11 357 451s 128 8 547 451s 129 5 1722+ 451s 130 6 2372+ 451s 131 6 2030 451s 132 5 1002 451s 133 3 1280 451s 134 8 338 451s 135 6 533 451s 136 6 168+ 451s 137 5 1169+ 451s 138 5 1675 451s 139 6 1862+ 451s 140 5 629+ 451s 141 10 1167+ 451s 142 6 495 451s 143 5 967+ 451s 144 5 1720+ 451s 145 6 598 451s 146 11 392 451s 147 3 1502+ 451s 148 6 229+ 451s 149 8 310+ 451s 150 5 1296+ 451s 151 10 488+ 451s 152 3 942+ 451s 153 8 570+ 451s 154 10 1177+ 451s 155 8 1113+ 451s 156 8 288 451s 157 6 723+ 451s 158 11 403 451s 159 10 1225 451s 160 8 338 451s 161 8 1337 451s 162 6 1420 451s 163 8 2048+ 451s 164 8 600 451s 165 5 1765+ 451s 166 8 491 451s 167 10 305 451s 168 6 1582+ 451s 169 8 1771+ 451s 170 8 960 451s 171 10 571 451s 172 8 675+ 451s 173 5 285 451s 174 8 1472+ 451s 175 5 1279 451s 176 6 148+ 451s 177 6 1863+ 451s 178 5 1933+ 451s 179 10 358 451s 180 5 734+ 451s 181 6 2372 451s 182 6 2563+ 451s 183 5 2372+ 451s 184 6 1989 451s 185 8 2015 451s 186 6 1956+ 451s 187 8 945 451s 188 6 2153+ 451s 189 6 838 451s 190 8 113 451s 191 6 1833+ 451s 192 8 1722+ 451s 193 8 241 451s 194 5 1352 451s 195 8 1702+ 451s 196 8 1222+ 451s 197 6 1089+ 451s 198 3 1243+ 451s 199 8 579 451s 200 8 1043 451s 201 6 2234+ 451s 202 5 2297+ 451s 203 6 2014+ 451s 204 6 518 451s 205 6 940+ 451s 206 6 766+ 451s 207 11 251 451s 208 6 1959+ 451s 209 3 1897+ 451s 210 11 160 451s 211 5 970+ 451s 212 5 892+ 451s 213 5 753+ 451s 214 8 348 451s 215 10 275 451s 216 5 1329 451s 217 6 1193 451s 218 10 698 451s 219 10 436 451s 220 6 552 451s 221 6 564 451s 222 6 2239+ 451s 223 5 2237+ 451s 224 6 529 451s 225 3 1820+ 451s 226 6 1756+ 451s 227 11 515 451s 228 11 272 451s 229 6 891 451s 230 6 1356+ 451s 231 10 1352+ 451s 232 6 1077+ 451s 233 6 675 451s 234 10 855+ 451s 235 6 740+ 451s 236 6 2551+ 451s 237 8 754 451s 238 8 819 451s 239 10 1280 451s 240 5 2388+ 451s 241 5 2296+ 451s 242 6 1884+ 451s 243 6 1059 451s 244 8 859+ 451s 245 6 1109+ 451s 246 6 1192 451s 247 8 1806 451s 248 11 500 451s 249 10 1589 451s 250 10 1463 451s 251 6 1826+ 451s 252 8 1231+ 451s 253 5 1117+ 451s 254 8 836 451s 255 6 1222+ 451s 256 8 663+ 451s 257 10 722 451s 258 5 322+ 451s 259 6 1150 451s 260 10 446 451s 261 10 1855+ 451s 262 10 238 451s 263 6 1838+ 451s 264 11 1826+ 451s 265 6 1093 451s 266 3 2051+ 451s 267 10 370 451s 268 5 861 451s 269 10 1587 451s 270 6 552 451s 271 3 2353+ 451s 272 8 2471+ 451s 273 8 893 451s 274 5 2093 451s 275 10 2612+ 451s 276 8 956 451s 277 10 1637+ 451s 278 5 2456+ 451s 279 8 2227+ 451s 280 6 1601 451s 281 6 1841+ 451s 282 8 2177+ 451s 283 6 2052+ 451s 284 11 973+ 451s 285 3 2156+ 451s 286 8 1499+ 451s 287 3 2030+ 451s 288 8 573 451s 289 5 1666+ 451s 290 8 1979+ 451s 291 8 1786+ 451s 292 8 1847+ 451s 293 5 2009+ 451s 294 5 1926+ 451s 295 3 1490+ 451s 296 11 233 451s 297 8 1240+ 451s 298 3 1751+ 451s 299 8 1878+ 451s 300 5 1171+ 451s 301 10 1751+ 451s 302 6 1756+ 451s 303 8 714 451s 304 8 1505+ 451s 305 8 776 451s 306 6 1443+ 451s 307 3 1317+ 451s 308 6 870+ 451s 309 11 859 451s 310 6 223 451s 311 6 1212+ 451s 312 5 1119+ 451s 313 8 740+ 451s 314 8 1062+ 451s 315 5 8+ 451s 316 6 936+ 451s 317 8 740+ 451s 318 10 632 451s 319 5 1760+ 451s 320 6 1013+ 451s 321 10 779+ 451s 322 10 375 451s 323 8 1323+ 451s 324 5 1233+ 451s 325 5 986+ 451s 326 10 650+ 451s 327 10 628+ 451s 328 6 1866+ 451s 329 8 491 451s 330 6 1918 451s 331 10 72 451s 332 10 1140 451s 333 8 799 451s 334 6 1105 451s 335 5 548 451s 336 11 227 451s 337 6 1838+ 451s 338 3 1833+ 451s 339 6 550 451s 340 6 426 451s 341 8 1834+ 451s 342 6 1604+ 451s 343 10 772+ 451s 344 8 1146 451s 345 6 371 451s 346 8 883 451s 347 6 1735+ 451s 348 8 554 451s 349 11 790 451s 350 5 1340+ 451s 351 11 490 451s 352 3 1557+ 451s 353 6 594 451s 354 10 828+ 451s 355 8 594 451s 356 8 841+ 451s 357 5 695+ 451s 358 5 2556+ 451s 359 6 1753 451s 360 10 417 451s 361 6 956 451s 362 8 1846+ 451s 363 8 1703+ 451s 364 6 1720+ 451s 365 6 1355+ 451s 366 6 1603+ 451s 367 8 476 451s 368 8 1350+ 451s 369 5 1341+ 451s 370 3 2449+ 451s 371 8 2286 451s 372 6 456 451s 373 6 536 451s 374 5 612 451s 375 6 2034 451s 376 6 1990 451s 377 10 2456 451s 378 3 2205+ 451s 379 6 544 451s 380 10 336 451s 381 6 2057+ 451s 382 8 575 451s 383 5 2011+ 451s 384 8 537 451s 385 3 2217+ 451s 386 8 1814 451s 387 6 890 451s 388 5 1114+ 451s 389 10 974+ 451s 390 6 296+ 451s 391 8 2320+ 451s 392 8 795 451s 393 8 867 451s 394 5 1703+ 451s 395 6 670 451s 396 8 981 451s 397 5 1094+ 451s 398 5 755 451s 399 10 1388 451s 400 6 1387 451s 401 10 535 451s 402 6 1653+ 451s 403 6 1904+ 451s 404 8 1868+ 451s 405 3 1767+ 451s 406 6 855 451s 407 6 1157 451s 408 8 1869+ 451s 409 8 1152+ 451s 410 6 1401+ 451s 411 6 918+ 451s 412 10 745 451s 413 8 1283+ 451s 414 6 1481 451s 415 8 1807+ 451s 416 6 542 451s 417 10 1441+ 451s 418 8 1277+ 451s 419 8 1486+ 451s 420 5 273+ 451s 421 10 177 451s 422 6 545 451s 423 6 1185+ 451s 424 11 631+ 451s 425 6 995+ 451s 426 8 1088+ 451s 427 6 877+ 451s 428 8 798+ 451s 429 8 2380+ 451s 430 5 1679 451s 431 10 498 451s 432 8 2138+ 451s 433 8 2175+ 451s 434 5 2271+ 451s 435 6 17+ 451s 436 6 964 451s 437 10 540 451s 438 11 747 451s 439 11 650 451s 440 11 410 451s 441 11 624 451s 442 10 1560+ 451s 443 11 455 451s 444 5 1629+ 451s 445 8 1730+ 451s 446 6 1483+ 451s 447 6 687 451s 448 6 308 451s 449 10 563 451s 450 5 46+ 451s 451 6 2144+ 451s 452 10 344 451s 453 6 945+ 451s 454 6 1905+ 451s 455 11 855 451s 456 5 2370+ 451s 457 6 853+ 451s 458 8 692+ 451s 459 8 475 451s 460 5 2195+ 451s 461 8 758+ 451s 462 8 648 451s 463 3 761+ 451s 464 8 596+ 451s 465 11 195 451s 466 10 473 451s 467 5 747+ 451s 468 5 2659+ 451s 469 11 1977 451s 470 6 2401+ 451s 471 5 1499+ 451s 472 11 1856+ 451s 473 11 595 451s 474 5 2148+ 451s 475 6 2126+ 451s 476 8 1975 451s 477 6 1641 451s 478 8 1717+ 451s 479 5 1858+ 451s 480 5 2049+ 451s 481 8 1502 451s 482 3 1922+ 451s 483 5 1818+ 451s 484 11 1100+ 451s 485 6 1499+ 451s 486 6 359 451s 487 8 1645+ 451s 488 5 1356+ 451s 489 6 1632+ 451s 490 6 967+ 451s 491 6 1091+ 451s 492 6 918 451s 493 6 557 451s 494 5 1219 451s 495 6 2170+ 451s 496 6 729 451s 497 10 1449 451s 498 5 991 451s 499 6 481 451s 500 6 1655+ 451s 501 6 857 451s 502 6 369 451s 503 5 1627+ 451s 504 5 1578+ 451s 505 8 732 451s 506 8 460 451s 507 6 1208+ 451s 508 8 730 451s 509 8 722+ 451s 510 6 717+ 451s 511 8 651+ 451s 512 5 637+ 451s 513 6 615+ 451s 514 10 42+ 451s 515 11 307 451s 516 8 983 451s 517 11 120 451s 518 6 1525 451s 519 8 1680+ 451s 520 11 1730 451s 521 8 805 451s 522 8 2388+ 451s 523 6 559 451s 524 10 1977+ 451s 525 6 476 451s 526 5 1514+ 451s 527 5 1617+ 451s 528 6 1094 451s 529 5 784 451s 530 10 181 451s 531 10 415 451s 532 8 1120 451s 533 10 316 451s 534 8 637 451s 535 6 247 451s 536 8 888+ 451s 537 10 622 451s 538 6 806+ 451s 539 6 1163+ 451s 540 5 1721+ 451s 541 5 741+ 451s 542 6 372 451s 543 6 1331+ 451s 544 8 394 451s 545 3 652+ 451s 546 10 657+ 451s 547 6 567+ 451s 548 10 429+ 451s 549 5 566+ 451s 550 11 15+ 451s 551 8 98 451s 552 5 368+ 451s 553 5 432+ 451s 554 5 319+ 451s 555 10 65+ 451s 556 8 16+ 451s 557 10 29+ 451s 558 8 18+ 451s 559 8 17+ 451s 560 10 308 451s 561 6 1965+ 451s 562 11 548 451s 563 10 293 451s 564 8 2017+ 451s 565 10 1093+ 451s 566 3 792+ 451s 567 6 586 451s 568 6 1434+ 451s 569 8 67+ 451s 570 8 623+ 451s 571 6 2128+ 451s 572 6 1965+ 451s 573 6 2161+ 451s 574 10 1183 451s 575 6 1108 451s 576 5 2065+ 451s 577 6 1598+ 451s 578 6 491 451s 579 10 1366 451s 580 6 424+ 451s 581 11 859 451s 582 11 180 451s 583 5 1625+ 451s 584 3 1938+ 451s 585 8 1343 451s 586 6 646 451s 587 6 2192+ 451s 588 6 502 451s 589 10 1675+ 451s 590 11 1363 451s 591 11 420 451s 592 8 982 451s 593 6 1459+ 451s 594 6 1192+ 451s 595 6 1264+ 451s 596 8 1095+ 451s 597 8 1078+ 451s 598 3 737+ 451s 599 8 461+ 451s 600 11 465 451s 601 11 842 451s 602 6 918+ 451s 603 8 374 451s 604 6 1089+ 451s 605 5 1527+ 451s 606 8 285 451s 607 6 1306 451s 608 10 797 451s 609 5 1441+ 451s 610 6 343 451s 611 8 936+ 451s 612 5 195+ 451s 613 6 503 451s 614 11 827 451s 615 5 1427+ 451s 616 6 854+ 451s 617 8 177 451s 618 10 281 451s 619 5 205 451s 620 8 751+ 451s 621 8 629 451s 622 6 526+ 451s 623 6 463+ 451s 624 5 529+ 451s 625 8 623+ 451s 626 11 546+ 451s 627 5 213+ 451s 628 6 276+ 451s 629 8 2010+ 451s 630 8 2009+ 451s 631 3 1984+ 451s 632 10 1981+ 451s 633 10 624 451s 634 10 742 451s 635 3 1818+ 451s 636 8 1493 451s 637 5 1432+ 451s 638 5 801 451s 639 6 1182+ 451s 640 6 71+ 451s 641 10 114+ 451s 642 6 63+ 451s 643 6 1722+ 451s 644 5 1692+ 451s 645 6 177+ 451s 646 5 57+ 451s 647 5 1152+ 451s 648 6 733+ 451s 649 6 1459 451s 650 5 2237+ 451s 651 6 933+ 451s 652 5 2056+ 451s 653 10 1729+ 451s 654 10 2024+ 451s 655 5 2039 451s 656 6 2027+ 451s 657 6 2007+ 451s 658 6 1253 451s 659 6 1789+ 451s 660 8 1707+ 451s 661 6 1714+ 451s 662 5 1717+ 451s 663 6 329 451s 664 5 1624+ 451s 665 6 1600+ 451s 666 5 385 451s 667 3 1475+ 451s 668 5 1435+ 451s 669 11 541+ 451s 670 5 1329+ 451s 671 8 1357+ 451s 672 6 1343+ 451s 673 5 748 451s 674 5 1090 451s 675 6 1219+ 451s 676 5 553+ 451s 677 8 662 451s 678 5 969+ 451s 679 8 974+ 451s 680 8 866 451s 681 10 504 451s 682 6 721+ 451s 683 11 186+ 451s 684 8 769 451s 685 6 727 451s 686 8 1701 451s > predict(pfit, newdata = GBSG2[1:100,], type = "prob") 451s $`1` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`2` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`3` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`4` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`5` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`6` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`7` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 33 2 NA NA NA 451s 451s $`8` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`9` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`10` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`11` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`12` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`13` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`14` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`15` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`16` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`17` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`18` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`19` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`20` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`21` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`22` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`23` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`24` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`25` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`26` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`27` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`28` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`29` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`30` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`31` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`32` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`33` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`34` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`35` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`36` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`37` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`38` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`39` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`40` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`41` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`42` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`43` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`44` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`45` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`46` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`47` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`48` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`49` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`50` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`51` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`52` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`53` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`54` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`55` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`56` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`57` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`58` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`59` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`60` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`61` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`62` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`63` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`64` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`65` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`66` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 33 2 NA NA NA 451s 451s $`67` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`68` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`69` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`70` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`71` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`72` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`73` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`74` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`75` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`76` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`77` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`78` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`79` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`80` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`81` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`82` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 33 2 NA NA NA 451s 451s $`83` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`84` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`85` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`86` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`87` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 33 2 NA NA NA 451s 451s $`88` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 87 55 742 577 1366 451s 451s $`89` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`90` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`91` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`92` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`93` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`94` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 221 89 1989 1641 NA 451s 451s $`95` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`96` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`97` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 57 48 500 426 747 451s 451s $`98` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s $`99` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 166 77 1701 1174 2018 451s 451s $`100` 451s Call: survfit(formula = y ~ 1, weights = w, subset = w > 0) 451s 451s n events median 0.95LCL 0.95UCL 451s [1,] 122 28 NA NA NA 451s 451s > predict(pfit, newdata = GBSG2[1:100,], type = "response") 451s 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 451s 1989 1701 1701 1701 1989 500 Inf Inf 500 742 742 742 Inf 1989 Inf Inf 451s 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 451s 1701 Inf Inf 1701 1989 Inf 1989 1989 500 Inf 1989 1701 1989 1989 1989 1989 451s 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 451s Inf 1989 1701 1989 500 1701 1989 1701 1701 1701 1989 1989 1989 1989 1989 500 451s 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 451s 1701 1701 1989 1989 1989 742 1701 1989 1701 1701 742 1701 500 1701 1989 1701 451s 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 451s 1989 Inf 742 1701 500 1989 1701 1989 742 500 1701 500 1989 742 500 Inf 451s 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 451s 742 Inf 742 1701 1701 1989 Inf 742 500 1989 500 1989 Inf 1989 Inf Inf 451s 97 98 99 100 451s 500 Inf 1701 Inf 451s > 451s > ### multiple responses 451s > f <- fitted(pfit) 451s > f[["(response)"]] <- data.frame(srv = f[["(response)"]], hansi = runif(nrow(f))) 451s > mp <- party(node_party(pfit), fitted = f, data = pfit$data) 451s > class(mp) <- c("constparty", "party") 451s > predict(mp, newdata = GBSG2[1:10,]) 451s srv hansi 451s 1 1989 0.4841861 451s 2 1701 0.4934019 451s 3 1701 0.4934019 451s 4 1701 0.4934019 451s 5 1989 0.4841861 451s 6 500 0.5053642 451s 7 Inf 0.4755246 451s 8 Inf 0.4927613 451s 9 500 0.5053642 451s 10 742 0.4963365 451s > 451s > ### pruning 451s > ## create party 451s > data("WeatherPlay", package = "partykit") 451s > py <- party( 451s + partynode(1L, 451s + split = partysplit(1L, index = 1:3), 451s + kids = list( 451s + partynode(2L, 451s + split = partysplit(3L, breaks = 75), 451s + kids = list( 451s + partynode(3L, info = "yes"), 451s + partynode(4L, info = "no"))), 451s + partynode(5L, 451s + split = partysplit(3L, breaks = 20), 451s + kids = list( 451s + partynode(6L, info = "no"), 451s + partynode(7L, info = "yes"))), 451s + partynode(8L, 451s + split = partysplit(4L, index = 1:2), 451s + kids = list( 451s + partynode(9L, info = "yes"), 451s + partynode(10L, info = "no"))))), 451s + WeatherPlay) 451s > names(py) <- LETTERS[nodeids(py)] 451s > 451s > ## print 451s > print(py) 451s [A] root 451s | [B] outlook in sunny 451s | | [C] humidity <= 75: yes 451s | | [D] humidity > 75: no 451s | [E] outlook in overcast 451s | | [F] humidity <= 20: no 451s | | [G] humidity > 20: yes 451s | [H] outlook in rainy 451s | | [I] windy in false: yes 451s | | [J] windy in true: no 451s > (py5 <- nodeprune(py, 5)) 451s [A] root 451s | [B] outlook in sunny 451s | | [C] humidity <= 75: yes 451s | | [D] humidity > 75: no 451s | [E] outlook in overcast: * 451s | [H] outlook in rainy 451s | | [I] windy in false: yes 451s | | [J] windy in true: no 451s > nodeids(py5) 451s [1] 1 2 3 4 5 6 7 8 451s > (pyH <- nodeprune(py5, "H")) 451s [A] root 451s | [B] outlook in sunny 451s | | [C] humidity <= 75: yes 451s | | [D] humidity > 75: no 451s | [E] outlook in overcast: * 451s | [H] outlook in rainy: * 451s > nodeids(pyH) 451s [1] 1 2 3 4 5 6 451s > 451s > ct <- ctree(Species ~ ., data = iris) 451s > nt <- node_party(ctree(Species ~ ., data = iris)) 451s > (ctp <- nodeprune(ct, 4)) ### party method 451s 451s Model formula: 451s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 451s 451s Fitted party: 451s [1] root 451s | [2] Petal.Length <= 1.9: setosa (n = 50, err = 0.0%) 451s | [3] Petal.Length > 1.9 451s | | [4] Petal.Width <= 1.7: versicolor (n = 54, err = 9.3%) 451s | | [5] Petal.Width > 1.7: virginica (n = 46, err = 2.2%) 451s 451s Number of inner nodes: 2 451s Number of terminal nodes: 3 451s > (ntp <- nodeprune(nt, 4)) ### partynode method 451s [1] root 451s | [2] V4 <= 1.9 * 451s | [3] V4 > 1.9 451s | | [4] V5 <= 1.7 * 451s | | [5] V5 > 1.7 * 451s > 451s > ### check if both methods do the same 451s > p1 <- predict(party(ntp, data = model.frame(ct)), type = "node") 451s > p2 <- predict(ctp, type = "node") 451s > stopifnot(max(abs(p1 - p2)) == 0) 451s > 451s > names(ct) <- LETTERS[nodeids(ct)] 451s > (ctp <- nodeprune(ct, "D")) 451s 451s Model formula: 451s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 451s 451s Fitted party: 451s [A] root 451s | [B] Petal.Length <= 1.9: setosa (n = 50, err = 0.0%) 451s | [C] Petal.Length > 1.9 451s | | [D] Petal.Width <= 1.7: versicolor (n = 54, err = 9.3%) 451s | | [G] Petal.Width > 1.7: virginica (n = 46, err = 2.2%) 451s 451s Number of inner nodes: 2 451s Number of terminal nodes: 3 451s > 451s > table(predict(ct, type = "node"), 451s + predict(ctp, type = "node")) 451s 451s 2 4 5 451s 2 50 0 0 451s 5 0 46 0 451s 6 0 8 0 451s 7 0 0 46 451s > 451s > (ct <- nodeprune(ct, names(ct)[names(ct) != "A"])) 451s 451s Model formula: 451s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 451s 451s Fitted party: 451s [A] root 451s | [B] Petal.Length <= 1.9: setosa (n = 50, err = 0.0%) 451s | [C] Petal.Length > 1.9: versicolor (n = 100, err = 50.0%) 451s 451s Number of inner nodes: 1 451s Number of terminal nodes: 2 451s > table(predict(ct, type = "node")) 451s 451s 2 3 451s 50 100 451s > 451s > nodeprune(ct, "B") 451s 451s Model formula: 451s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 451s 451s Fitted party: 451s [A] root 451s | [B] Petal.Length <= 1.9: setosa (n = 50, err = 0.0%) 451s | [C] Petal.Length > 1.9: versicolor (n = 100, err = 50.0%) 451s 451s Number of inner nodes: 1 451s Number of terminal nodes: 2 451s > nodeprune(ct, "C") 451s 451s Model formula: 451s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 451s 451s Fitted party: 451s [A] root 451s | [B] Petal.Length <= 1.9: setosa (n = 50, err = 0.0%) 451s | [C] Petal.Length > 1.9: versicolor (n = 100, err = 50.0%) 451s 451s Number of inner nodes: 1 451s Number of terminal nodes: 2 451s > nodeprune(ct, "A") 451s 451s Model formula: 451s Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width 451s 451s Fitted party: 451s [A] root: setosa (n = 150, err = 66.7%) 451s 451s Number of inner nodes: 0 451s Number of terminal nodes: 1 451s > 451s > ### check different predict flavours for numeric responses 451s > x <- runif(100) 451s > dd <- data.frame(y = rnorm(length(x), mean = 2 * (x < .5)), x = x) 451s > ct <- ctree(y ~ x, data = dd) 451s > nd <- data.frame(x = (1:9) / 10) 451s > predict(ct, newdata = nd, type = "node") 451s 1 2 3 4 5 6 7 8 9 451s 2 2 2 2 3 3 3 3 3 451s > predict(ct, newdata = nd, type = "response") 451s 1 2 3 4 5 6 451s 2.00831636 2.00831636 2.00831636 2.00831636 -0.09553441 -0.09553441 451s 7 8 9 451s -0.09553441 -0.09553441 -0.09553441 451s > predict(ct, newdata = nd, type = "prob") 451s $`1` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:52] = -1.2364, 0.36086, 0.55078, ..., 4.4155, 4.5651 451s 451s $`2` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:52] = -1.2364, 0.36086, 0.55078, ..., 4.4155, 4.5651 451s 451s $`3` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:52] = -1.2364, 0.36086, 0.55078, ..., 4.4155, 4.5651 451s 451s $`4` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:52] = -1.2364, 0.36086, 0.55078, ..., 4.4155, 4.5651 451s 451s $`5` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:48] = -3.0824, -2.0565, -1.8227, ..., 1.6461, 2.5958 451s 451s $`6` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:48] = -3.0824, -2.0565, -1.8227, ..., 1.6461, 2.5958 451s 451s $`7` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:48] = -3.0824, -2.0565, -1.8227, ..., 1.6461, 2.5958 451s 451s $`8` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:48] = -3.0824, -2.0565, -1.8227, ..., 1.6461, 2.5958 451s 451s $`9` 451s Empirical CDF 451s Call: ecdf(y) 451s x[1:48] = -3.0824, -2.0565, -1.8227, ..., 1.6461, 2.5958 451s 451s > predict(ct, newdata = nd, type = "quantile") 451s 10% 50% 90% 451s 1 0.6076311 1.81758525 3.770170 451s 2 0.6076311 1.81758525 3.770170 451s 3 0.6076311 1.81758525 3.770170 451s 4 0.6076311 1.81758525 3.770170 451s 5 -1.4411614 -0.03681346 1.223035 451s 6 -1.4411614 -0.03681346 1.223035 451s 7 -1.4411614 -0.03681346 1.223035 451s 8 -1.4411614 -0.03681346 1.223035 451s 9 -1.4411614 -0.03681346 1.223035 451s > predict(ct, newdata = nd, type = "quantile", at = NULL) 451s $`1` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`2` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`3` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`4` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`5` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`6` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`7` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`8` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s $`9` 451s function (p, ...) 451s quantile(y, probs = p, ...) 451s 451s 451s 451s > predict(ct, newdata = nd, type = "density") 451s $`1` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`2` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`3` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`4` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`5` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`6` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`7` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`8` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s $`9` 451s function (v) 451s .approxfun(x, y, v, method, yleft, yright, f, na.rm) 451s 451s 451s 451s > predict(ct, newdata = nd, type = "density", at = (1:9) / 10) 451s [,1] [,2] [,3] [,4] [,5] [,6] [,7] 451s 1 0.07581246 0.09551348 0.1170437 0.1397812 0.1631133 0.1865103 0.2095743 451s 2 0.07581246 0.09551348 0.1170437 0.1397812 0.1631133 0.1865103 0.2095743 451s 3 0.07581246 0.09551348 0.1170437 0.1397812 0.1631133 0.1865103 0.2095743 451s 4 0.07581246 0.09551348 0.1170437 0.1397812 0.1631133 0.1865103 0.2095743 451s 5 0.32710968 0.32691339 0.3250592 0.3209789 0.3142630 0.3046930 0.2922756 451s 6 0.32710968 0.32691339 0.3250592 0.3209789 0.3142630 0.3046930 0.2922756 451s 7 0.32710968 0.32691339 0.3250592 0.3209789 0.3142630 0.3046930 0.2922756 451s 8 0.32710968 0.32691339 0.3250592 0.3209789 0.3142630 0.3046930 0.2922756 451s 9 0.32710968 0.32691339 0.3250592 0.3209789 0.3142630 0.3046930 0.2922756 451s [,8] [,9] 451s 1 0.2320384 0.2537089 451s 2 0.2320384 0.2537089 451s 3 0.2320384 0.2537089 451s 4 0.2320384 0.2537089 451s 5 0.2772455 0.2600116 451s 6 0.2772455 0.2600116 451s 7 0.2772455 0.2600116 451s 8 0.2772455 0.2600116 451s 9 0.2772455 0.2600116 451s > 451s BEGIN TEST regtest-split.R 451s 451s R version 4.3.2 (2023-10-31) -- "Eye Holes" 451s Copyright (C) 2023 The R Foundation for Statistical Computing 451s Platform: aarch64-unknown-linux-gnu (64-bit) 451s 451s R is free software and comes with ABSOLUTELY NO WARRANTY. 451s You are welcome to redistribute it under certain conditions. 451s Type 'license()' or 'licence()' for distribution details. 451s 451s R is a collaborative project with many contributors. 451s Type 'contributors()' for more information and 451s 'citation()' on how to cite R or R packages in publications. 451s 451s Type 'demo()' for some demos, 'help()' for on-line help, or 451s 'help.start()' for an HTML browser interface to help. 451s Type 'q()' to quit R. 451s 452s > suppressWarnings(RNGversion("3.5.2")) 452s > 452s > library("partykit") 452s Loading required package: grid 452s Loading required package: libcoin 452s Loading required package: mvtnorm 452s > set.seed(1) 452s > 452s > dat <- data.frame(v1 = as.double(1:100)) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(50)) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] "<= 50" "> 50" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == ((dat$v1 > 50) + 1))) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(50), 452s + index = as.integer(c(2, 1))) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] "> 50" "<= 50" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == ((dat$v1 <= 50) + 1))) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(50), right = FALSE) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] "< 50" ">= 50" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == ((dat$v1 >= 50) + 1))) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(50), 452s + index = as.integer(c(2, 1)), right = FALSE) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] ">= 50" "< 50" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == ((dat$v1 < 50) + 1))) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(c(25, 75))) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] "(-Inf,25]" "(25,75]" "(75, Inf]" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == 452s + as.integer(cut(dat$v1, c(-Inf, 25, 75, Inf))))) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(c(25, 75)), right = FALSE) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] "[-Inf,25)" "[25,75)" "[75, Inf)" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == 452s + as.integer(cut(dat$v1, c(-Inf, c(25, 75), Inf), right = FALSE)))) 452s > 452s > sv1 <- partysplit(as.integer(1), breaks = as.double(c(25, 75)), 452s + index = as.integer(3:1), right = FALSE) 452s > character_split(sv1, dat) 452s $name 452s [1] "v1" 452s 452s $levels 452s [1] "[75, Inf)" "[25,75)" "[-Inf,25)" 452s 452s > stopifnot(all(kidids_split(sv1, dat) == 452s + (3:1)[as.integer(cut(dat$v1, c(-Inf, c(25, 75), Inf), right = FALSE))])) 452s > 452s > 452s > dat$v2 <- gl(4, 25) 452s > 452s > sv2 <- partysplit(as.integer(2), index = as.integer(c(1, 2, 1, 2))) 452s > character_split(sv2, dat) 452s $name 452s [1] "v2" 452s 452s $levels 452s [1] "1, 3" "2, 4" 452s 452s > kidids_split(sv2, dat) 452s [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 452s [38] 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 452s [75] 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 452s > 452s > sv2 <- partysplit(as.integer(2), breaks = as.integer(c(1, 3))) 452s > character_split(sv2, dat) 452s $name 452s [1] "v2" 452s 452s $levels 452s [1] "1" "2, 3" "4" 452s 452s > kidids_split(sv2, dat) 452s [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 452s [38] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 452s [75] 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 452s > 452s > 452s > dat <- data.frame(x = gl(3, 30, labels = LETTERS[1:3]), y = rnorm(90), 452s + z = gl(9, 10, labels = LETTERS[1:9], ordered = TRUE)) 452s > csp <- partysplit(as.integer(1), index = as.integer(c(1, 2, 1))) 452s > kidids_split(csp, dat) 452s [1] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 452s [39] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 452s [77] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 452s > #kidids_node(list(csp), dat) 452s > 452s > nsp <- partysplit(as.integer(2), breaks = c(-1, 0, 1), index = as.integer(c(1, 2, 1, 3))) 452s > kidids_split(nsp, dat) 452s [1] 2 1 2 3 1 2 1 1 1 2 3 1 2 1 3 2 2 1 1 1 1 1 1 1 1 2 2 1 2 1 3 2 1 2 1 2 2 2 452s [39] 3 1 2 2 1 1 2 2 1 1 2 1 1 2 1 1 3 3 2 1 1 2 3 2 1 1 2 1 1 3 1 3 1 2 1 2 1 1 452s [77] 2 1 1 2 2 2 3 1 1 1 3 2 1 1 452s > 452s > osp <- partysplit(as.integer(3), breaks = as.integer(c(3, 6)), index = as.integer(c(2, 1, 2))) 452s > kidids_split(osp, dat) 452s [1] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 452s [39] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 452s [77] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 452s > 452s > nadat <- dat 452s > nadat$x[1:10] <- NA 452s > nadat$y[11:20] <- NA 452s > #kidids_node(list(csp, nsp, osp), nadat) 452s > 452s > character_split(csp, dat) 452s $name 452s [1] "x" 452s 452s $levels 452s [1] "A, C" "B" 452s 452s > character_split(nsp, dat) 452s $name 452s [1] "y" 452s 452s $levels 452s [1] "(-Inf,-1] | (0,1]" "(-1,0]" "(1, Inf]" 452s 452s > character_split(osp, dat) 452s $name 452s [1] "z" 452s 452s $levels 452s [1] "D, E, F" "A, B, C, G, H, I" 452s 452s > 452s > 452s BEGIN TEST regtest-weights.R 453s 453s R version 4.3.2 (2023-10-31) -- "Eye Holes" 453s Copyright (C) 2023 The R Foundation for Statistical Computing 453s Platform: aarch64-unknown-linux-gnu (64-bit) 453s 453s R is free software and comes with ABSOLUTELY NO WARRANTY. 453s You are welcome to redistribute it under certain conditions. 453s Type 'license()' or 'licence()' for distribution details. 453s 453s R is a collaborative project with many contributors. 453s Type 'contributors()' for more information and 453s 'citation()' on how to cite R or R packages in publications. 453s 453s Type 'demo()' for some demos, 'help()' for on-line help, or 453s 'help.start()' for an HTML browser interface to help. 453s Type 'q()' to quit R. 453s 453s > suppressWarnings(RNGversion("3.5.2")) 453s > 453s > library("partykit") 453s Loading required package: grid 453s Loading required package: libcoin 453s Loading required package: mvtnorm 454s > 454s > 454s > ## artificial data --------------------------------------------------------------------------------- 454s > set.seed(0) 454s > d <- data.frame(x = seq(-1, 1, length.out = 1000), z = factor(rep(0:1, 500))) 454s > d$y <- 0 + 1 * d$x + rnorm(nrow(d)) 454s > d$w <- rep(1:4, nrow(d)/4) 454s > dd <- d[rep(1:nrow(d), d$w), ] 454s > 454s > 454s > ## convenience function: likelihood ratio test ----------------------------------------------------- 454s > lrtest <- function(data, ...) { 454s + lr <- -2 * (logLik(lm(y ~ x, data = data, ...)) - logLik(lm(y ~ x * z, data = data, ...))) 454s + matrix( 454s + c(lr, pchisq(lr, df = 2, lower.tail = FALSE)), 454s + dimnames = list(c("statistic", "p.value"), "z") 454s + ) 454s + } 454s > 454s > 454s > ## lm: case weights -------------------------------------------------------------------------------- 454s > 454s > ## weighted and explicitly expanded data should match exactly 454s > lm1 <- lmtree(y ~ x | z, data = d, weights = w, maxdepth = 2) 454s > lm2 <- lmtree(y ~ x | z, data = dd, maxdepth = 2) 454s > all.equal(sctest.modelparty(lm1), sctest.modelparty(lm2)) 454s [1] TRUE 454s > 454s > ## LR test should be similar (albeit not identical) 454s > all.equal(sctest.modelparty(lm1), lrtest(dd), tol = 0.05) 454s [1] TRUE 454s > 454s > 454s > ## lm: proportionality weights --------------------------------------------------------------------- 454s > 454s > ## LR test should be similar 454s > lm3 <- lmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, caseweights = FALSE) 454s > all.equal(sctest.modelparty(lm3), lrtest(d, weights = d$w), tol = 0.05) 454s [1] TRUE 454s > 454s > ## constant factor should not change results 454s > lm3x <- lmtree(y ~ x | z, data = d, weights = 2 * w, maxdepth = 2, caseweights = FALSE) 454s > all.equal(sctest.modelparty(lm3), sctest.modelparty(lm3x)) 454s [1] TRUE 454s > 454s > 454s > ## glm: case weights ------------------------------------------------------------------------------- 454s > 454s > ## for glm different vcov are available 454s > glm1o <- glmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, vcov = "opg") 454s > glm2o <- glmtree(y ~ x | z, data = dd, maxdepth = 2, vcov = "opg") 454s > all.equal(sctest.modelparty(glm1o), sctest.modelparty(glm1o)) 454s [1] TRUE 454s > 454s > glm1i <- glmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, vcov = "info") 454s > glm2i <- glmtree(y ~ x | z, data = dd, maxdepth = 2, vcov = "info") 454s > all.equal(sctest.modelparty(glm1i), sctest.modelparty(glm2i)) 454s [1] TRUE 454s > 454s > glm1s <- glmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, vcov = "sandwich") 454s > glm2s <- glmtree(y ~ x | z, data = dd, maxdepth = 2, vcov = "sandwich") 454s > all.equal(sctest.modelparty(glm1s), sctest.modelparty(glm2s)) 454s [1] TRUE 454s > 454s > ## different vcov should yield similar (albeit not identical) statistics 454s > all.equal(sctest.modelparty(glm1o), sctest.modelparty(glm1i), tol = 0.05) 454s [1] TRUE 454s > all.equal(sctest.modelparty(glm1o), sctest.modelparty(glm1s), tol = 0.05) 454s [1] TRUE 454s > 454s > ## LR test should be similar 454s > all.equal(sctest.modelparty(glm1o), lrtest(dd), tol = 0.05) 454s [1] TRUE 454s > 454s > 454s > ## glm: proportionality weights -------------------------------------------------------------------- 454s > 454s > ## different test versions should be similar 454s > glmFo <- glmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, caseweights = FALSE, vcov = "opg") 454s > glmFi <- glmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, caseweights = FALSE, vcov = "info") 454s > glmFs <- glmtree(y ~ x | z, data = d, weights = w, maxdepth = 2, caseweights = FALSE, vcov = "sandwich") 454s > 454s > all.equal(sctest.modelparty(glmFo), sctest.modelparty(glmFi), tol = 0.05) 454s [1] TRUE 454s > all.equal(sctest.modelparty(glmFo), sctest.modelparty(glmFs), tol = 0.05) 454s [1] TRUE 454s > all.equal(sctest.modelparty(glmFo), lrtest(d, weights = d$w), tol = 0.05) 454s [1] TRUE 454s > 454s > ## constant factor should not change results 454s > glmFxo <- glmtree(y ~ x | z, data = d, weights = 2 * w, maxdepth = 2, caseweights = FALSE, vcov = "opg") 454s > glmFxi <- glmtree(y ~ x | z, data = d, weights = 2 * w, maxdepth = 2, caseweights = FALSE, vcov = "info") 454s > glmFxs <- glmtree(y ~ x | z, data = d, weights = 2 * w, maxdepth = 2, caseweights = FALSE, vcov = "sandwich") 454s > 454s > all.equal(sctest.modelparty(glmFo), sctest.modelparty(glmFxo)) 454s [1] TRUE 454s > all.equal(sctest.modelparty(glmFi), sctest.modelparty(glmFxi)) 454s [1] TRUE 454s > all.equal(sctest.modelparty(glmFs), sctest.modelparty(glmFxs)) 454s [1] TRUE 454s > 454s autopkgtest [19:32:44]: test run-unit-test: -----------------------] 455s run-unit-test PASS 455s autopkgtest [19:32:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 455s autopkgtest [19:32:45]: test pkg-r-autopkgtest: preparing testbed 456s Reading package lists... 457s Building dependency tree... 457s Reading state information... 457s Starting pkgProblemResolver with broken count: 0 457s Starting 2 pkgProblemResolver with broken count: 0 457s Done 457s The following additional packages will be installed: 457s adwaita-icon-theme at-spi2-common build-essential ca-certificates-java cpp 457s cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu dctrl-tools 457s default-jre default-jre-headless fonts-glyphicons-halflings fonts-mathjax 457s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 457s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 457s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 457s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools 457s java-common libasan8 libasound2 libasound2-data libatk1.0-0 libatomic1 457s libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev 457s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcups2 457s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libgcc-13-dev 457s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgif7 457s libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 457s libgtk2.0-0 libgtk2.0-common libhwasan0 libicu-dev libisl23 libitm1 457s libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap 457s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 457s liblapack-dev liblcms2-2 libllvm17 liblsan0 liblzma-dev libmpc3 457s libncurses-dev libnlopt0 libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 457s libpcre2-posix3 libpcsclite1 libpkgconf3 libpng-dev libreadline-dev 457s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 libvulkan1 libx11-xcb1 457s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 457s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 457s libxfixes3 libxi6 libxinerama1 libxrandr2 libxshmfence1 libxtst6 libxxf86vm1 457s linux-libc-dev littler node-normalize.css openjdk-21-jre 457s openjdk-21-jre-headless pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 457s r-base-dev r-cran-abind r-cran-aer r-cran-backports r-cran-bit r-cran-bit64 457s r-cran-boot r-cran-brio r-cran-broom r-cran-callr r-cran-car r-cran-cardata 457s r-cran-caret r-cran-cellranger r-cran-class r-cran-cli r-cran-clipr 457s r-cran-clock r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-crayon 457s r-cran-curl r-cran-data.table r-cran-desc r-cran-diagram r-cran-diffobj 457s r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate 457s r-cran-fansi r-cran-farver r-cran-forcats r-cran-foreach r-cran-foreign 457s r-cran-fs r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 457s r-cran-globals r-cran-glue r-cran-gower r-cran-gtable r-cran-hardhat 457s r-cran-haven r-cran-highr r-cran-hms r-cran-ipred r-cran-isoband 457s r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 457s r-cran-labeling r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler 457s r-cran-lme4 r-cran-lmtest r-cran-lubridate r-cran-magrittr r-cran-maptools 457s r-cran-matrixmodels r-cran-mgcv r-cran-minqa r-cran-modelmetrics 457s r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv 457s r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest r-cran-pillar 457s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr 457s r-cran-praise r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim 457s r-cran-progress r-cran-progressr r-cran-proxy r-cran-ps r-cran-psychotools 457s r-cran-psychotree r-cran-purrr r-cran-quantreg r-cran-r.methodss3 457s r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-rcolorbrewer 457s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-readr r-cran-readxl 457s r-cran-recipes r-cran-rematch r-cran-rematch2 r-cran-reshape2 r-cran-rio 457s r-cran-rjava r-cran-rlang r-cran-rprojroot r-cran-scales r-cran-shape 457s r-cran-sp r-cran-sparsem r-cran-squarem r-cran-statmod r-cran-stringi 457s r-cran-stringr r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 457s r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vcd 457s r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr 457s r-cran-writexl r-cran-xfun r-cran-yaml r-cran-zip rpcsvc-proto ubuntu-mono 457s zlib1g-dev 457s Suggested packages: 457s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 457s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 457s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 457s libasound2-plugins alsa-utils liblapack-doc glibc-doc cups-common gvfs 457s icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils 457s liblzma-doc ncurses-doc pcscd readline-doc libstdc++-13-doc libjs-html5shiv 457s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 457s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic texlive-base 457s texlive-latex-base texlive-plain-generic texlive-fonts-recommended 457s texlive-fonts-extra texlive-extra-utils texlive-latex-recommended 457s texlive-latex-extra texinfo r-cran-roxygen2 r-cran-rmarkdown r-cran-ff 457s r-cran-bbmle r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr 457s r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee r-cran-geepack 457s r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-irlba r-cran-interp r-cran-ks 457s r-cran-lavaan r-cran-leaps r-cran-lsmeans r-cran-maps r-cran-mclust 457s r-cran-metafor r-cran-modeldata r-cran-network r-cran-ordinal r-cran-plm 457s r-cran-psych r-cran-robust r-cran-robustbase r-cran-rsample r-cran-spdep 457s r-cran-spatialreg r-cran-spelling r-cran-survey r-cran-systemfit 457s r-cran-tseries r-cran-bradleyterry2 r-cran-ellipse r-cran-pls r-cran-rann 457s r-cran-rstudioapi r-cran-slider r-cran-kernlab r-cran-shiny r-cran-shinyjs 457s r-cran-png r-cran-jpeg r-cran-viridis r-cran-tinytest r-cran-markdown 457s r-cran-magick r-cran-sf r-cran-getopt r-cran-rgeos r-cran-spatstat.geom 457s r-cran-raster r-cran-polyclip r-cran-plotrix r-cran-spatstat.linnet 457s r-cran-spatstat.utils r-cran-spatstat r-cran-dbi r-cran-formattable 457s r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-vdiffr 457s r-cran-inline r-cran-bench r-cran-blob r-cran-here r-cran-htmltools 457s r-cran-runit 457s Recommended packages: 457s librsvg2-common alsa-ucm-conf alsa-topology-conf bzip2-doc manpages 457s manpages-dev libc-devtools libgdk-pixbuf2.0-bin libgl1-amber-dri 457s libgail-common libgtk2.0-bin javascript-common libpng-tools 457s mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 457s r-cran-dynlm r-cran-effects r-cran-fgarch r-cran-forecast r-cran-plm 457s r-cran-pscl r-cran-rgl r-cran-rocr r-cran-scatterplot3d r-cran-systemfit 457s r-cran-tseries r-cran-urca r-cran-covr r-cran-cliapp r-cran-mockery 457s r-cran-earth r-cran-mda r-cran-mlmetrics r-cran-fastica r-cran-kernlab 457s r-cran-themis r-cran-htmltools r-cran-htmlwidgets r-cran-rmarkdown 457s r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr 457s r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils r-cran-xts 457s r-cran-nanotime r-cran-gh r-cran-dbi r-cran-dbplyr r-cran-rmysql 457s r-cran-rpostgresql r-cran-rsqlite r-cran-unitizer r-cran-rhpcblasctl 457s r-cran-r.rsp r-cran-markdown r-cran-hexbin r-cran-hmisc r-cran-mapproj 457s r-cran-maps r-cran-profvis r-cran-ragg r-cran-sf r-cran-svglite 457s r-cran-vdiffr r-cran-xml2 r-cran-devtools r-cran-modeldata r-cran-roxygen2 457s r-cran-usethis r-cran-testit r-cran-httr r-cran-bslib r-cran-formatr 457s r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate 457s r-cran-sass r-cran-tikzdevice r-cran-tinytex r-cran-webshot 457s node-highlight.js r-cran-ellipse r-cran-fields r-cran-geepack r-bioc-graph 457s r-cran-bookdown r-cran-igraph r-cran-lavasearch2 r-cran-mets r-cran-optimx 457s r-cran-polycor r-cran-lintr r-cran-tidyverse r-cran-bitops r-cran-mathjaxr 457s r-cran-mockr r-cran-remotes r-cran-doparallel r-cran-itertools 457s r-cran-logcondens r-cran-webfakes r-cran-pbmcapply r-cran-furrr r-cran-shiny 457s r-cran-commonmark r-cran-base64enc r-cran-cba r-cran-pingr 457s r-cran-stablelearner r-cran-ddalpha r-cran-dials r-cran-rann r-cran-rcpproll 457s r-cran-rsample r-cran-rspectra r-cran-splines2 r-cran-dichromat r-cran-gstat 457s r-cran-deldir r-cran-terra r-cran-raster r-cran-setrng r-cran-formattable 457s r-cran-hsaur3 r-cran-pkgdown r-cran-zeallot r-cran-mime r-cran-renv 457s r-cran-runit 457s The following NEW packages will be installed: 457s adwaita-icon-theme at-spi2-common autopkgtest-satdep build-essential 457s ca-certificates-java cpp cpp-13 cpp-13-aarch64-linux-gnu 457s cpp-aarch64-linux-gnu dctrl-tools default-jre default-jre-headless 457s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 457s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 457s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 457s gfortran-aarch64-linux-gnu gtk-update-icon-cache hicolor-icon-theme 457s humanity-icon-theme icu-devtools java-common libasan8 libasound2 457s libasound2-data libatk1.0-0 libatomic1 libavahi-client3 libavahi-common-data 457s libavahi-common3 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 457s libcrypt-dev libcups2 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 457s libgcc-13-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev 457s libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 457s libgtk2.0-0 libgtk2.0-common libhwasan0 libicu-dev libisl23 libitm1 457s libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap 457s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 457s liblapack-dev liblcms2-2 libllvm17 liblsan0 liblzma-dev libmpc3 457s libncurses-dev libnlopt0 libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 457s libpcre2-posix3 libpcsclite1 libpkgconf3 libpng-dev libreadline-dev 457s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 libvulkan1 libx11-xcb1 457s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 457s libxcb-sync1 libxcb-xfixes0 libxcomposite1 libxcursor1 libxdamage1 457s libxfixes3 libxi6 libxinerama1 libxrandr2 libxshmfence1 libxtst6 libxxf86vm1 457s linux-libc-dev littler node-normalize.css openjdk-21-jre 457s openjdk-21-jre-headless pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 457s r-base-dev r-cran-abind r-cran-aer r-cran-backports r-cran-bit r-cran-bit64 457s r-cran-boot r-cran-brio r-cran-broom r-cran-callr r-cran-car r-cran-cardata 457s r-cran-caret r-cran-cellranger r-cran-class r-cran-cli r-cran-clipr 457s r-cran-clock r-cran-colorspace r-cran-conquer r-cran-cpp11 r-cran-crayon 457s r-cran-curl r-cran-data.table r-cran-desc r-cran-diagram r-cran-diffobj 457s r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis r-cran-evaluate 457s r-cran-fansi r-cran-farver r-cran-forcats r-cran-foreach r-cran-foreign 457s r-cran-fs r-cran-future r-cran-future.apply r-cran-generics r-cran-ggplot2 457s r-cran-globals r-cran-glue r-cran-gower r-cran-gtable r-cran-hardhat 457s r-cran-haven r-cran-highr r-cran-hms r-cran-ipred r-cran-isoband 457s r-cran-iterators r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 457s r-cran-labeling r-cran-lava r-cran-lifecycle r-cran-listenv r-cran-littler 457s r-cran-lme4 r-cran-lmtest r-cran-lubridate r-cran-magrittr r-cran-maptools 457s r-cran-matrixmodels r-cran-mgcv r-cran-minqa r-cran-modelmetrics 457s r-cran-munsell r-cran-nlme r-cran-nloptr r-cran-nnet r-cran-numderiv 457s r-cran-openxlsx r-cran-parallelly r-cran-pbkrtest r-cran-pillar 457s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr 457s r-cran-praise r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim 457s r-cran-progress r-cran-progressr r-cran-proxy r-cran-ps r-cran-psychotools 457s r-cran-psychotree r-cran-purrr r-cran-quantreg r-cran-r.methodss3 457s r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-randomforest r-cran-rcolorbrewer 457s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcppeigen r-cran-readr r-cran-readxl 457s r-cran-recipes r-cran-rematch r-cran-rematch2 r-cran-reshape2 r-cran-rio 457s r-cran-rjava r-cran-rlang r-cran-rprojroot r-cran-scales r-cran-shape 457s r-cran-sp r-cran-sparsem r-cran-squarem r-cran-statmod r-cran-stringi 457s r-cran-stringr r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 457s r-cran-timechange r-cran-timedate r-cran-tzdb r-cran-utf8 r-cran-vcd 457s r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr 457s r-cran-writexl r-cran-xfun r-cran-yaml r-cran-zip rpcsvc-proto ubuntu-mono 457s zlib1g-dev 458s 0 upgraded, 268 newly installed, 0 to remove and 0 not upgraded. 458s Need to get 284 MB/284 MB of archives. 458s After this operation, 976 MB of additional disk space will be used. 458s Get:1 /tmp/autopkgtest.jQ2php/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [804 B] 458s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 458s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libgdk-pixbuf-2.0-0 arm64 2.42.10+dfsg-3 [144 kB] 458s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 gtk-update-icon-cache arm64 3.24.40-2ubuntu1 [50.5 kB] 458s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 hicolor-icon-theme all 0.17-2 [9976 B] 458s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 humanity-icon-theme all 0.6.16 [1282 kB] 458s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 458s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 adwaita-icon-theme all 46~rc-1 [723 kB] 458s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 at-spi2-common all 2.50.0-1 [7864 B] 458s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 458s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 458s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 458s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 458s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 458s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 458s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 459s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 459s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 459s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 459s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 459s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 459s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 459s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 459s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 459s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 459s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 459s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 459s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 460s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 460s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 460s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 460s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 460s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 460s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 460s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 460s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 460s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 461s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 461s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 461s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 461s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 461s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 ca-certificates-java all 20240118 [11.6 kB] 461s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 461s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 java-common all 0.75+exp1 [6798 B] 461s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common-data arm64 0.8-13ubuntu2 [29.5 kB] 461s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-common3 arm64 0.8-13ubuntu2 [23.2 kB] 461s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libavahi-client3 arm64 0.8-13ubuntu2 [27.3 kB] 461s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libcups2 arm64 2.4.6-0ubuntu3 [270 kB] 461s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 461s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2-data all 1.2.10-3build1 [20.7 kB] 461s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libasound2 arm64 1.2.10-3build1 [386 kB] 461s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcsclite1 arm64 2.0.0-1 [21.2 kB] 461s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre-headless arm64 21.0.2+13-2 [45.8 MB] 462s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre-headless arm64 2:1.21-75+exp1 [3096 B] 462s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 462s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libatk1.0-0 arm64 2.50.0-1 [53.8 kB] 462s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcomposite1 arm64 1:0.4.5-1build2 [7080 B] 462s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxfixes3 arm64 1:6.0.0-2 [11.0 kB] 462s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcursor1 arm64 1:1.2.1-1 [21.3 kB] 462s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxdamage1 arm64 1:1.1.6-1 [6032 B] 462s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 462s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxinerama1 arm64 2:1.1.4-3 [7056 B] 462s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxrandr2 arm64 2:1.5.2-2 [19.6 kB] 462s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgtk2.0-0 arm64 2.24.33-2ubuntu2 [1981 kB] 462s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libglvnd0 arm64 1.7.0-1 [60.0 kB] 462s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libglapi-mesa arm64 24.0.1-1ubuntu1 [57.8 kB] 462s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-xcb1 arm64 2:1.8.7-1 [7836 B] 462s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri2-0 arm64 1.15-1 [7244 B] 462s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-dri3-0 arm64 1.15-1 [7108 B] 462s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-glx0 arm64 1.15-1 [25.2 kB] 462s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-present0 arm64 1.15-1 [5732 B] 462s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-randr0 arm64 1.15-1 [18.2 kB] 462s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-sync1 arm64 1.15-1 [9412 B] 462s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-xfixes0 arm64 1.15-1 [10.3 kB] 462s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libxshmfence1 arm64 1.3-1build4 [5444 B] 462s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libxxf86vm1 arm64 1:1.1.4-1build3 [10.3 kB] 462s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libvulkan1 arm64 1.3.275.0-1 [150 kB] 462s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-amdgpu1 arm64 2.4.120-2 [20.4 kB] 462s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-nouveau2 arm64 2.4.120-2 [17.8 kB] 462s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libdrm-radeon1 arm64 2.4.120-2 [20.9 kB] 462s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libllvm17 arm64 1:17.0.6-5build1 [25.0 MB] 463s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1-mesa-dri arm64 24.0.1-1ubuntu1 [8226 kB] 463s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libglx-mesa0 arm64 24.0.1-1ubuntu1 [166 kB] 463s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libglx0 arm64 1.7.0-1 [32.4 kB] 463s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libgl1 arm64 1.7.0-1 [107 kB] 463s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 463s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libxtst6 arm64 2:1.2.3-1.1 [13.7 kB] 463s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 openjdk-21-jre arm64 21.0.2+13-2 [226 kB] 463s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 default-jre arm64 2:1.21-75+exp1 [922 B] 463s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 463s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 463s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 463s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 463s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 463s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 463s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 463s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 463s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 464s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 464s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 464s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 464s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 464s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 464s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 464s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 464s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 464s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 464s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 465s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 465s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 465s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 465s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 465s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 465s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 465s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 465s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 465s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 465s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 465s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 465s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 465s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 465s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 465s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 465s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 465s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 465s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 465s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 465s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cardata all 3.0.5-1 [1819 kB] 465s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 465s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 465s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 465s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB] 465s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 465s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 465s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-minqa arm64 1.2.6-1 [107 kB] 465s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libnlopt0 arm64 2.7.1-5build2 [174 kB] 465s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 465s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 465s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 465s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 465s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 465s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 465s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 465s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 465s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 465s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 465s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 465s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 465s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 465s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 465s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 465s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 465s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 465s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 465s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 465s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 465s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 465s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 465s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 465s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 465s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 465s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 465s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 465s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 465s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 465s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 465s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 466s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nloptr arm64 2.0.3-1 [375 kB] 466s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 466s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 466s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lme4 arm64 1.1-35.1-4 [4116 kB] 466s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 466s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 466s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 466s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 466s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 466s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 466s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 466s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 466s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 466s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 466s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 466s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 466s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 466s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 466s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 466s Get:187 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 466s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 466s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbkrtest all 0.5.2-2 [182 kB] 466s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sparsem arm64 1.81-1 [902 kB] 466s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 466s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 466s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 466s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 466s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 466s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 466s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 466s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 466s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 466s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 466s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 466s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 466s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 467s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 467s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 467s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 467s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 467s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 467s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modelmetrics arm64 1.2.2.2-1build1 [121 kB] 467s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 467s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proc arm64 1.18.5-1 [963 kB] 467s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 467s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clock arm64 0.7.0-1.1 [1736 kB] 467s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gower arm64 1.0.1-1 [206 kB] 467s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hardhat all 1.3.1+dfsg-1 [554 kB] 467s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shape all 1.4.6-1 [770 kB] 467s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diagram all 1.6.5-2 [656 kB] 467s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 467s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 467s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 467s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 467s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 467s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 467s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progressr all 0.14.0-1 [338 kB] 467s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-squarem all 2021.1-1 [179 kB] 467s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 467s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prodlim arm64 2023.08.28-1 [407 kB] 467s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ipred arm64 0.9-14-1 [383 kB] 467s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timechange arm64 0.3.0-1 [172 kB] 467s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lubridate arm64 1.9.3+dfsg-1 [1010 kB] 468s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timedate arm64 4032.109-1 [1229 kB] 468s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-recipes all 1.0.9+dfsg-1 [1964 kB] 468s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 468s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-caret arm64 6.0-94+dfsg-1 [3434 kB] 468s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-conquer arm64 1.3.3-1 [440 kB] 468s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-quantreg arm64 5.97-1 [1527 kB] 468s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 468s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 468s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maptools arm64 1:1.1-8+dfsg-1 [1365 kB] 468s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 468s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 468s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 468s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 468s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 468s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 468s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 468s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 468s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 468s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 468s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 468s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch all 2.0.0-1 [18.3 kB] 468s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cellranger all 1.1.0-3 [102 kB] 468s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readxl arm64 1.4.3-1 [726 kB] 468s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-writexl arm64 1.5.0-1 [157 kB] 468s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 468s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 468s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 468s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zip arm64 2.3.1-1 [125 kB] 468s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openxlsx arm64 4.2.5.2-1 [1925 kB] 468s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rio all 1.0.1-1 [529 kB] 468s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-car all 3.1-2-2 [1692 kB] 468s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lmtest arm64 0.9.40-1 [396 kB] 468s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-aer all 1.2-12-1 [2582 kB] 468s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-psychotools arm64 0.7-3-1 [1079 kB] 469s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-psychotree all 0.16-0-1 [459 kB] 469s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-randomforest arm64 4.7-1.1-1 [214 kB] 469s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjava arm64 1.0-11-1 [716 kB] 469s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vcd all 1:1.4-12-1 [1267 kB] 470s Fetched 284 MB in 11s (25.6 MB/s) 470s Selecting previously unselected package libgdk-pixbuf2.0-common. 470s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78076 files and directories currently installed.) 470s Preparing to unpack .../000-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 470s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 470s Selecting previously unselected package libgdk-pixbuf-2.0-0:arm64. 470s Preparing to unpack .../001-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_arm64.deb ... 470s Unpacking libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 470s Selecting previously unselected package gtk-update-icon-cache. 470s Preparing to unpack .../002-gtk-update-icon-cache_3.24.40-2ubuntu1_arm64.deb ... 470s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 470s Selecting previously unselected package hicolor-icon-theme. 470s Preparing to unpack .../003-hicolor-icon-theme_0.17-2_all.deb ... 470s Unpacking hicolor-icon-theme (0.17-2) ... 470s Selecting previously unselected package humanity-icon-theme. 470s Preparing to unpack .../004-humanity-icon-theme_0.6.16_all.deb ... 470s Unpacking humanity-icon-theme (0.6.16) ... 471s Selecting previously unselected package ubuntu-mono. 471s Preparing to unpack .../005-ubuntu-mono_24.04-0ubuntu1_all.deb ... 471s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 471s Selecting previously unselected package adwaita-icon-theme. 471s Preparing to unpack .../006-adwaita-icon-theme_46~rc-1_all.deb ... 471s Unpacking adwaita-icon-theme (46~rc-1) ... 471s Selecting previously unselected package at-spi2-common. 471s Preparing to unpack .../007-at-spi2-common_2.50.0-1_all.deb ... 471s Unpacking at-spi2-common (2.50.0-1) ... 471s Selecting previously unselected package libc-dev-bin. 471s Preparing to unpack .../008-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 471s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 471s Selecting previously unselected package linux-libc-dev:arm64. 471s Preparing to unpack .../009-linux-libc-dev_6.8.0-11.11_arm64.deb ... 471s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 471s Selecting previously unselected package libcrypt-dev:arm64. 471s Preparing to unpack .../010-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 471s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 471s Selecting previously unselected package libtirpc-dev:arm64. 471s Preparing to unpack .../011-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 471s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 472s Selecting previously unselected package libnsl-dev:arm64. 472s Preparing to unpack .../012-libnsl-dev_1.3.0-3_arm64.deb ... 472s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 472s Selecting previously unselected package rpcsvc-proto. 472s Preparing to unpack .../013-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 472s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 472s Selecting previously unselected package libc6-dev:arm64. 472s Preparing to unpack .../014-libc6-dev_2.39-0ubuntu2_arm64.deb ... 472s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 472s Selecting previously unselected package libisl23:arm64. 472s Preparing to unpack .../015-libisl23_0.26-3_arm64.deb ... 472s Unpacking libisl23:arm64 (0.26-3) ... 472s Selecting previously unselected package libmpc3:arm64. 472s Preparing to unpack .../016-libmpc3_1.3.1-1_arm64.deb ... 472s Unpacking libmpc3:arm64 (1.3.1-1) ... 472s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 472s Preparing to unpack .../017-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 472s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 472s Selecting previously unselected package cpp-13. 472s Preparing to unpack .../018-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 472s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 472s Selecting previously unselected package cpp-aarch64-linux-gnu. 472s Preparing to unpack .../019-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 472s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 472s Selecting previously unselected package cpp. 472s Preparing to unpack .../020-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 472s Unpacking cpp (4:13.2.0-7ubuntu1) ... 472s Selecting previously unselected package libcc1-0:arm64. 472s Preparing to unpack .../021-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 472s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 472s Selecting previously unselected package libitm1:arm64. 472s Preparing to unpack .../022-libitm1_14-20240303-1ubuntu1_arm64.deb ... 472s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 472s Selecting previously unselected package libatomic1:arm64. 472s Preparing to unpack .../023-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 472s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 472s Selecting previously unselected package libasan8:arm64. 472s Preparing to unpack .../024-libasan8_14-20240303-1ubuntu1_arm64.deb ... 472s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 472s Selecting previously unselected package liblsan0:arm64. 472s Preparing to unpack .../025-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 472s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 473s Selecting previously unselected package libtsan2:arm64. 473s Preparing to unpack .../026-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 473s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 473s Selecting previously unselected package libubsan1:arm64. 473s Preparing to unpack .../027-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 473s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 473s Selecting previously unselected package libhwasan0:arm64. 473s Preparing to unpack .../028-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 473s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 473s Selecting previously unselected package libgcc-13-dev:arm64. 473s Preparing to unpack .../029-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 473s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 473s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 473s Preparing to unpack .../030-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 473s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 473s Selecting previously unselected package gcc-13. 473s Preparing to unpack .../031-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 473s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 473s Selecting previously unselected package gcc-aarch64-linux-gnu. 473s Preparing to unpack .../032-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 473s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 473s Selecting previously unselected package gcc. 473s Preparing to unpack .../033-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 473s Unpacking gcc (4:13.2.0-7ubuntu1) ... 473s Selecting previously unselected package libstdc++-13-dev:arm64. 474s Preparing to unpack .../034-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 474s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 474s Selecting previously unselected package g++-13-aarch64-linux-gnu. 474s Preparing to unpack .../035-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 474s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 474s Selecting previously unselected package g++-13. 474s Preparing to unpack .../036-g++-13_13.2.0-17ubuntu2_arm64.deb ... 474s Unpacking g++-13 (13.2.0-17ubuntu2) ... 474s Selecting previously unselected package g++-aarch64-linux-gnu. 474s Preparing to unpack .../037-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 474s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 474s Selecting previously unselected package g++. 474s Preparing to unpack .../038-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 474s Unpacking g++ (4:13.2.0-7ubuntu1) ... 474s Selecting previously unselected package build-essential. 474s Preparing to unpack .../039-build-essential_12.10ubuntu1_arm64.deb ... 474s Unpacking build-essential (12.10ubuntu1) ... 474s Selecting previously unselected package ca-certificates-java. 474s Preparing to unpack .../040-ca-certificates-java_20240118_all.deb ... 474s Unpacking ca-certificates-java (20240118) ... 474s Selecting previously unselected package dctrl-tools. 474s Preparing to unpack .../041-dctrl-tools_2.24-3build2_arm64.deb ... 474s Unpacking dctrl-tools (2.24-3build2) ... 474s Selecting previously unselected package java-common. 474s Preparing to unpack .../042-java-common_0.75+exp1_all.deb ... 474s Unpacking java-common (0.75+exp1) ... 474s Selecting previously unselected package libavahi-common-data:arm64. 474s Preparing to unpack .../043-libavahi-common-data_0.8-13ubuntu2_arm64.deb ... 474s Unpacking libavahi-common-data:arm64 (0.8-13ubuntu2) ... 474s Selecting previously unselected package libavahi-common3:arm64. 474s Preparing to unpack .../044-libavahi-common3_0.8-13ubuntu2_arm64.deb ... 474s Unpacking libavahi-common3:arm64 (0.8-13ubuntu2) ... 474s Selecting previously unselected package libavahi-client3:arm64. 474s Preparing to unpack .../045-libavahi-client3_0.8-13ubuntu2_arm64.deb ... 474s Unpacking libavahi-client3:arm64 (0.8-13ubuntu2) ... 474s Selecting previously unselected package libcups2:arm64. 474s Preparing to unpack .../046-libcups2_2.4.6-0ubuntu3_arm64.deb ... 474s Unpacking libcups2:arm64 (2.4.6-0ubuntu3) ... 474s Selecting previously unselected package liblcms2-2:arm64. 474s Preparing to unpack .../047-liblcms2-2_2.14-2_arm64.deb ... 474s Unpacking liblcms2-2:arm64 (2.14-2) ... 474s Selecting previously unselected package libasound2-data. 474s Preparing to unpack .../048-libasound2-data_1.2.10-3build1_all.deb ... 474s Unpacking libasound2-data (1.2.10-3build1) ... 474s Selecting previously unselected package libasound2:arm64. 474s Preparing to unpack .../049-libasound2_1.2.10-3build1_arm64.deb ... 474s Unpacking libasound2:arm64 (1.2.10-3build1) ... 474s Selecting previously unselected package libpcsclite1:arm64. 474s Preparing to unpack .../050-libpcsclite1_2.0.0-1_arm64.deb ... 474s Unpacking libpcsclite1:arm64 (2.0.0-1) ... 474s Selecting previously unselected package openjdk-21-jre-headless:arm64. 474s Preparing to unpack .../051-openjdk-21-jre-headless_21.0.2+13-2_arm64.deb ... 474s Unpacking openjdk-21-jre-headless:arm64 (21.0.2+13-2) ... 476s Selecting previously unselected package default-jre-headless. 476s Preparing to unpack .../052-default-jre-headless_2%3a1.21-75+exp1_arm64.deb ... 476s Unpacking default-jre-headless (2:1.21-75+exp1) ... 476s Selecting previously unselected package libgtk2.0-common. 476s Preparing to unpack .../053-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 476s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 476s Selecting previously unselected package libatk1.0-0:arm64. 476s Preparing to unpack .../054-libatk1.0-0_2.50.0-1_arm64.deb ... 476s Unpacking libatk1.0-0:arm64 (2.50.0-1) ... 476s Selecting previously unselected package libxcomposite1:arm64. 476s Preparing to unpack .../055-libxcomposite1_1%3a0.4.5-1build2_arm64.deb ... 476s Unpacking libxcomposite1:arm64 (1:0.4.5-1build2) ... 476s Selecting previously unselected package libxfixes3:arm64. 476s Preparing to unpack .../056-libxfixes3_1%3a6.0.0-2_arm64.deb ... 476s Unpacking libxfixes3:arm64 (1:6.0.0-2) ... 476s Selecting previously unselected package libxcursor1:arm64. 476s Preparing to unpack .../057-libxcursor1_1%3a1.2.1-1_arm64.deb ... 476s Unpacking libxcursor1:arm64 (1:1.2.1-1) ... 476s Selecting previously unselected package libxdamage1:arm64. 476s Preparing to unpack .../058-libxdamage1_1%3a1.1.6-1_arm64.deb ... 476s Unpacking libxdamage1:arm64 (1:1.1.6-1) ... 476s Selecting previously unselected package libxi6:arm64. 476s Preparing to unpack .../059-libxi6_2%3a1.8.1-1_arm64.deb ... 476s Unpacking libxi6:arm64 (2:1.8.1-1) ... 476s Selecting previously unselected package libxinerama1:arm64. 476s Preparing to unpack .../060-libxinerama1_2%3a1.1.4-3_arm64.deb ... 476s Unpacking libxinerama1:arm64 (2:1.1.4-3) ... 476s Selecting previously unselected package libxrandr2:arm64. 476s Preparing to unpack .../061-libxrandr2_2%3a1.5.2-2_arm64.deb ... 476s Unpacking libxrandr2:arm64 (2:1.5.2-2) ... 476s Selecting previously unselected package libgtk2.0-0:arm64. 476s Preparing to unpack .../062-libgtk2.0-0_2.24.33-2ubuntu2_arm64.deb ... 476s Unpacking libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 476s Selecting previously unselected package libglvnd0:arm64. 476s Preparing to unpack .../063-libglvnd0_1.7.0-1_arm64.deb ... 476s Unpacking libglvnd0:arm64 (1.7.0-1) ... 476s Selecting previously unselected package libglapi-mesa:arm64. 476s Preparing to unpack .../064-libglapi-mesa_24.0.1-1ubuntu1_arm64.deb ... 476s Unpacking libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 476s Selecting previously unselected package libx11-xcb1:arm64. 476s Preparing to unpack .../065-libx11-xcb1_2%3a1.8.7-1_arm64.deb ... 476s Unpacking libx11-xcb1:arm64 (2:1.8.7-1) ... 476s Selecting previously unselected package libxcb-dri2-0:arm64. 476s Preparing to unpack .../066-libxcb-dri2-0_1.15-1_arm64.deb ... 476s Unpacking libxcb-dri2-0:arm64 (1.15-1) ... 476s Selecting previously unselected package libxcb-dri3-0:arm64. 476s Preparing to unpack .../067-libxcb-dri3-0_1.15-1_arm64.deb ... 476s Unpacking libxcb-dri3-0:arm64 (1.15-1) ... 476s Selecting previously unselected package libxcb-glx0:arm64. 476s Preparing to unpack .../068-libxcb-glx0_1.15-1_arm64.deb ... 476s Unpacking libxcb-glx0:arm64 (1.15-1) ... 476s Selecting previously unselected package libxcb-present0:arm64. 476s Preparing to unpack .../069-libxcb-present0_1.15-1_arm64.deb ... 476s Unpacking libxcb-present0:arm64 (1.15-1) ... 476s Selecting previously unselected package libxcb-randr0:arm64. 476s Preparing to unpack .../070-libxcb-randr0_1.15-1_arm64.deb ... 476s Unpacking libxcb-randr0:arm64 (1.15-1) ... 476s Selecting previously unselected package libxcb-sync1:arm64. 476s Preparing to unpack .../071-libxcb-sync1_1.15-1_arm64.deb ... 476s Unpacking libxcb-sync1:arm64 (1.15-1) ... 476s Selecting previously unselected package libxcb-xfixes0:arm64. 476s Preparing to unpack .../072-libxcb-xfixes0_1.15-1_arm64.deb ... 476s Unpacking libxcb-xfixes0:arm64 (1.15-1) ... 476s Selecting previously unselected package libxshmfence1:arm64. 476s Preparing to unpack .../073-libxshmfence1_1.3-1build4_arm64.deb ... 476s Unpacking libxshmfence1:arm64 (1.3-1build4) ... 476s Selecting previously unselected package libxxf86vm1:arm64. 476s Preparing to unpack .../074-libxxf86vm1_1%3a1.1.4-1build3_arm64.deb ... 476s Unpacking libxxf86vm1:arm64 (1:1.1.4-1build3) ... 476s Selecting previously unselected package libvulkan1:arm64. 476s Preparing to unpack .../075-libvulkan1_1.3.275.0-1_arm64.deb ... 476s Unpacking libvulkan1:arm64 (1.3.275.0-1) ... 476s Selecting previously unselected package libdrm-amdgpu1:arm64. 476s Preparing to unpack .../076-libdrm-amdgpu1_2.4.120-2_arm64.deb ... 476s Unpacking libdrm-amdgpu1:arm64 (2.4.120-2) ... 476s Selecting previously unselected package libdrm-nouveau2:arm64. 476s Preparing to unpack .../077-libdrm-nouveau2_2.4.120-2_arm64.deb ... 476s Unpacking libdrm-nouveau2:arm64 (2.4.120-2) ... 477s Selecting previously unselected package libdrm-radeon1:arm64. 477s Preparing to unpack .../078-libdrm-radeon1_2.4.120-2_arm64.deb ... 477s Unpacking libdrm-radeon1:arm64 (2.4.120-2) ... 477s Selecting previously unselected package libllvm17:arm64. 477s Preparing to unpack .../079-libllvm17_1%3a17.0.6-5build1_arm64.deb ... 477s Unpacking libllvm17:arm64 (1:17.0.6-5build1) ... 477s Selecting previously unselected package libgl1-mesa-dri:arm64. 477s Preparing to unpack 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Selecting previously unselected package openjdk-21-jre:arm64. 478s Preparing to unpack .../086-openjdk-21-jre_21.0.2+13-2_arm64.deb ... 478s Unpacking openjdk-21-jre:arm64 (21.0.2+13-2) ... 478s Selecting previously unselected package default-jre. 478s Preparing to unpack .../087-default-jre_2%3a1.21-75+exp1_arm64.deb ... 478s Unpacking default-jre (2:1.21-75+exp1) ... 478s Selecting previously unselected package fonts-glyphicons-halflings. 478s Preparing to unpack .../088-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 478s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 478s Selecting previously unselected package fonts-mathjax. 478s Preparing to unpack .../089-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 478s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 478s Selecting previously unselected package libgfortran-13-dev:arm64. 478s Preparing to unpack .../090-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 478s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 478s Preparing to unpack .../091-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 478s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package gfortran-13. 478s Preparing to unpack .../092-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 478s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 478s Selecting previously unselected package gfortran-aarch64-linux-gnu. 478s Preparing to unpack .../093-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 478s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 478s Selecting previously unselected package gfortran. 478s Preparing to unpack .../094-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 478s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 478s Selecting previously unselected package icu-devtools. 478s Preparing to unpack .../095-icu-devtools_74.2-1ubuntu1_arm64.deb ... 478s Unpacking icu-devtools (74.2-1ubuntu1) ... 478s Selecting previously unselected package libblas-dev:arm64. 478s Preparing to unpack .../096-libblas-dev_3.12.0-3_arm64.deb ... 478s Unpacking libblas-dev:arm64 (3.12.0-3) ... 478s Selecting previously unselected package libbz2-dev:arm64. 478s Preparing to unpack .../097-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 478s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 478s Selecting previously unselected package libicu-dev:arm64. 478s Preparing to unpack .../098-libicu-dev_74.2-1ubuntu1_arm64.deb ... 478s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 479s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 479s Preparing to unpack .../099-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 479s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 479s Selecting previously unselected package libjpeg8-dev:arm64. 479s Preparing to unpack .../100-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 479s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 479s Selecting previously unselected package libjpeg-dev:arm64. 479s Preparing to unpack .../101-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 479s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 479s Selecting previously unselected package libjs-bootstrap. 479s Preparing to unpack .../102-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 479s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 479s Selecting previously unselected package libjs-highlight.js. 479s Preparing to unpack .../103-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 479s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 479s Selecting previously unselected package libjs-jquery. 479s Preparing to unpack .../104-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 479s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 479s Selecting previously unselected package libjs-jquery-datatables. 479s Preparing to unpack .../105-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 479s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 479s Selecting previously unselected package liblapack-dev:arm64. 479s Preparing to unpack .../106-liblapack-dev_3.12.0-3_arm64.deb ... 479s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 479s Selecting previously unselected package libncurses-dev:arm64. 479s Preparing to unpack .../107-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 479s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 479s Selecting previously unselected package libpcre2-16-0:arm64. 479s Preparing to unpack .../108-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 479s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 479s Selecting previously unselected package libpcre2-32-0:arm64. 479s Preparing to unpack .../109-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 479s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 479s Selecting previously unselected package libpcre2-posix3:arm64. 479s Preparing to unpack .../110-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 479s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 479s Selecting previously unselected package libpcre2-dev:arm64. 479s Preparing to unpack .../111-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 479s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 479s Selecting previously unselected package libpkgconf3:arm64. 479s Preparing to unpack .../112-libpkgconf3_1.8.1-2_arm64.deb ... 479s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 479s Selecting previously unselected package zlib1g-dev:arm64. 479s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 479s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 480s Selecting previously unselected package libpng-dev:arm64. 480s Preparing to unpack .../114-libpng-dev_1.6.43-1_arm64.deb ... 480s Unpacking libpng-dev:arm64 (1.6.43-1) ... 480s Selecting previously unselected package libreadline-dev:arm64. 480s Preparing to unpack .../115-libreadline-dev_8.2-3_arm64.deb ... 480s Unpacking libreadline-dev:arm64 (8.2-3) ... 480s Selecting previously unselected package r-cran-littler. 480s Preparing to unpack .../116-r-cran-littler_0.3.19-1_arm64.deb ... 480s Unpacking r-cran-littler (0.3.19-1) ... 480s Selecting previously unselected package littler. 480s Preparing to unpack .../117-littler_0.3.19-1_all.deb ... 480s Unpacking littler (0.3.19-1) ... 480s Selecting previously unselected package node-normalize.css. 480s Preparing to unpack .../118-node-normalize.css_8.0.1-5_all.deb ... 480s Unpacking node-normalize.css (8.0.1-5) ... 480s Selecting previously unselected package pkgconf-bin. 480s Preparing to unpack .../119-pkgconf-bin_1.8.1-2_arm64.deb ... 480s Unpacking pkgconf-bin (1.8.1-2) ... 480s Selecting previously unselected package pkgconf:arm64. 480s Preparing to unpack .../120-pkgconf_1.8.1-2_arm64.deb ... 480s Unpacking pkgconf:arm64 (1.8.1-2) ... 480s Selecting previously unselected package pkg-config:arm64. 480s Preparing to unpack .../121-pkg-config_1.8.1-2_arm64.deb ... 480s Unpacking pkg-config:arm64 (1.8.1-2) ... 480s Selecting previously unselected package liblzma-dev:arm64. 480s Preparing to unpack .../122-liblzma-dev_5.4.5-0.3_arm64.deb ... 480s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 480s Selecting previously unselected package r-base-dev. 480s Preparing to unpack .../123-r-base-dev_4.3.2-1build1_all.deb ... 480s Unpacking r-base-dev (4.3.2-1build1) ... 480s Selecting previously unselected package pkg-r-autopkgtest. 480s Preparing to unpack .../124-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 480s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 480s Selecting previously unselected package r-cran-abind. 480s Preparing to unpack .../125-r-cran-abind_1.4-5-2_all.deb ... 480s Unpacking r-cran-abind (1.4-5-2) ... 480s Selecting previously unselected package r-cran-cardata. 480s Preparing to unpack .../126-r-cran-cardata_3.0.5-1_all.deb ... 480s Unpacking r-cran-cardata (3.0.5-1) ... 480s Selecting previously unselected package r-cran-nlme. 480s Preparing to unpack .../127-r-cran-nlme_3.1.164-1_arm64.deb ... 480s Unpacking r-cran-nlme (3.1.164-1) ... 480s Selecting previously unselected package r-cran-mgcv. 480s Preparing to unpack .../128-r-cran-mgcv_1.9-1-1_arm64.deb ... 480s Unpacking r-cran-mgcv (1.9-1-1) ... 480s Selecting previously unselected package r-cran-nnet. 480s Preparing to unpack .../129-r-cran-nnet_7.3-19-2_arm64.deb ... 480s Unpacking r-cran-nnet (7.3-19-2) ... 480s Selecting previously unselected package r-cran-boot. 480s Preparing to unpack .../130-r-cran-boot_1.3-30-1_all.deb ... 480s Unpacking r-cran-boot (1.3-30-1) ... 480s Selecting previously unselected package r-cran-pkgkitten. 480s Preparing to unpack .../131-r-cran-pkgkitten_0.2.3-1_all.deb ... 480s Unpacking r-cran-pkgkitten (0.2.3-1) ... 480s Selecting previously unselected package r-cran-rcpp. 480s Preparing to unpack .../132-r-cran-rcpp_1.0.12-1_arm64.deb ... 480s Unpacking r-cran-rcpp (1.0.12-1) ... 480s Selecting previously unselected package r-cran-minqa. 480s Preparing to unpack .../133-r-cran-minqa_1.2.6-1_arm64.deb ... 480s Unpacking r-cran-minqa (1.2.6-1) ... 480s Selecting previously unselected package libnlopt0:arm64. 480s Preparing to unpack .../134-libnlopt0_2.7.1-5build2_arm64.deb ... 480s Unpacking libnlopt0:arm64 (2.7.1-5build2) ... 480s Selecting previously unselected package r-cran-brio. 480s Preparing to unpack .../135-r-cran-brio_1.1.4-1_arm64.deb ... 480s Unpacking r-cran-brio (1.1.4-1) ... 480s Selecting previously unselected package r-cran-ps. 480s Preparing to unpack .../136-r-cran-ps_1.7.6-1_arm64.deb ... 480s Unpacking r-cran-ps (1.7.6-1) ... 480s Selecting previously unselected package r-cran-r6. 480s Preparing to unpack .../137-r-cran-r6_2.5.1-1_all.deb ... 480s Unpacking r-cran-r6 (2.5.1-1) ... 481s Selecting previously unselected package r-cran-processx. 481s Preparing to unpack .../138-r-cran-processx_3.8.3-1_arm64.deb ... 481s Unpacking r-cran-processx (3.8.3-1) ... 481s Selecting previously unselected package r-cran-callr. 481s Preparing to unpack .../139-r-cran-callr_3.7.3-2_all.deb ... 481s Unpacking r-cran-callr (3.7.3-2) ... 481s Selecting previously unselected package r-cran-cli. 481s Preparing to unpack .../140-r-cran-cli_3.6.2-1_arm64.deb ... 481s Unpacking r-cran-cli (3.6.2-1) ... 481s Selecting previously unselected package r-cran-desc. 481s Preparing to unpack .../141-r-cran-desc_1.4.3-1_all.deb ... 481s Unpacking r-cran-desc (1.4.3-1) ... 481s Selecting previously unselected package r-cran-digest. 481s Preparing to unpack .../142-r-cran-digest_0.6.34-1_arm64.deb ... 481s Unpacking r-cran-digest (0.6.34-1) ... 481s Selecting previously unselected package r-cran-evaluate. 481s Preparing to unpack .../143-r-cran-evaluate_0.23-1_all.deb ... 481s Unpacking r-cran-evaluate (0.23-1) ... 481s Selecting previously unselected package r-cran-jsonlite. 481s Preparing to unpack .../144-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 481s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 481s Selecting previously unselected package r-cran-glue. 481s Preparing to unpack .../145-r-cran-glue_1.7.0-1_arm64.deb ... 481s Unpacking r-cran-glue (1.7.0-1) ... 481s Selecting previously unselected package r-cran-rlang. 481s Preparing to unpack .../146-r-cran-rlang_1.1.3-1_arm64.deb ... 481s Unpacking r-cran-rlang (1.1.3-1) ... 481s Selecting previously unselected package r-cran-lifecycle. 481s Preparing to unpack .../147-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 481s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 481s Selecting previously unselected package r-cran-magrittr. 481s Preparing to unpack .../148-r-cran-magrittr_2.0.3-1_arm64.deb ... 481s Unpacking r-cran-magrittr (2.0.3-1) ... 481s Selecting previously unselected package r-cran-crayon. 481s Preparing to unpack .../149-r-cran-crayon_1.5.2-1_all.deb ... 481s Unpacking r-cran-crayon (1.5.2-1) ... 481s Selecting previously unselected package r-cran-fs. 481s Preparing to unpack .../150-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 481s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 481s Selecting previously unselected package r-cran-pkgbuild. 481s Preparing to unpack .../151-r-cran-pkgbuild_1.4.3-1_all.deb ... 481s Unpacking r-cran-pkgbuild (1.4.3-1) ... 481s Selecting previously unselected package r-cran-rprojroot. 481s Preparing to unpack .../152-r-cran-rprojroot_2.0.4-1_all.deb ... 481s Unpacking r-cran-rprojroot (2.0.4-1) ... 481s Selecting previously unselected package r-cran-withr. 481s Preparing to unpack .../153-r-cran-withr_2.5.0-1_all.deb ... 481s Unpacking r-cran-withr (2.5.0-1) ... 481s Selecting previously unselected package r-cran-pkgload. 481s Preparing to unpack .../154-r-cran-pkgload_1.3.4-1_all.deb ... 481s Unpacking r-cran-pkgload (1.3.4-1) ... 481s Selecting previously unselected package r-cran-praise. 481s Preparing to unpack .../155-r-cran-praise_1.0.0-4build1_all.deb ... 481s Unpacking r-cran-praise (1.0.0-4build1) ... 481s Selecting previously unselected package r-cran-diffobj. 481s Preparing to unpack .../156-r-cran-diffobj_0.3.5-1_arm64.deb ... 481s Unpacking r-cran-diffobj (0.3.5-1) ... 481s Selecting previously unselected package r-cran-fansi. 481s Preparing to unpack .../157-r-cran-fansi_1.0.5-1_arm64.deb ... 481s Unpacking r-cran-fansi (1.0.5-1) ... 481s Selecting previously unselected package r-cran-utf8. 481s Preparing to unpack .../158-r-cran-utf8_1.2.4-1_arm64.deb ... 481s Unpacking r-cran-utf8 (1.2.4-1) ... 481s Selecting previously unselected package r-cran-vctrs. 481s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 481s Unpacking r-cran-vctrs (0.6.5-1) ... 482s Selecting previously unselected package r-cran-pillar. 482s Preparing to unpack .../160-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 482s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 482s Selecting previously unselected package r-cran-pkgconfig. 482s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 482s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 482s Selecting previously unselected package r-cran-tibble. 482s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 482s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 482s Selecting previously unselected package r-cran-rematch2. 482s Preparing to unpack .../163-r-cran-rematch2_2.1.2-2build1_all.deb ... 482s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 482s Selecting previously unselected package r-cran-waldo. 482s Preparing to unpack .../164-r-cran-waldo_0.5.2-1build1_all.deb ... 482s Unpacking r-cran-waldo (0.5.2-1build1) ... 482s Selecting previously unselected package r-cran-testthat. 482s Preparing to unpack .../165-r-cran-testthat_3.2.1-1_arm64.deb ... 482s Unpacking r-cran-testthat (3.2.1-1) ... 482s Selecting previously unselected package r-cran-nloptr. 482s Preparing to unpack .../166-r-cran-nloptr_2.0.3-1_arm64.deb ... 482s Unpacking r-cran-nloptr (2.0.3-1) ... 482s Selecting previously unselected package r-cran-rcppeigen. 482s Preparing to unpack .../167-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 482s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 482s Selecting previously unselected package r-cran-statmod. 482s Preparing to unpack .../168-r-cran-statmod_1.5.0-1_arm64.deb ... 482s Unpacking r-cran-statmod (1.5.0-1) ... 482s Selecting previously unselected package r-cran-lme4. 482s Preparing to unpack .../169-r-cran-lme4_1.1-35.1-4_arm64.deb ... 482s Unpacking r-cran-lme4 (1.1-35.1-4) ... 482s Selecting previously unselected package r-cran-backports. 482s Preparing to unpack .../170-r-cran-backports_1.4.1-1_arm64.deb ... 482s Unpacking r-cran-backports (1.4.1-1) ... 482s Selecting previously unselected package r-cran-generics. 482s Preparing to unpack .../171-r-cran-generics_0.1.3-1_all.deb ... 482s Unpacking r-cran-generics (0.1.3-1) ... 482s Selecting previously unselected package r-cran-tidyselect. 482s Preparing to unpack .../172-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 482s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 482s Selecting previously unselected package r-cran-dplyr. 482s Preparing to unpack .../173-r-cran-dplyr_1.1.4-1_arm64.deb ... 482s Unpacking r-cran-dplyr (1.1.4-1) ... 482s Selecting previously unselected package r-cran-ellipsis. 482s Preparing to unpack .../174-r-cran-ellipsis_0.3.2-2_arm64.deb ... 482s Unpacking r-cran-ellipsis (0.3.2-2) ... 482s Selecting previously unselected package r-cran-purrr. 482s Preparing to unpack .../175-r-cran-purrr_1.0.2-1_arm64.deb ... 482s Unpacking r-cran-purrr (1.0.2-1) ... 482s Selecting previously unselected package r-cran-stringi. 482s Preparing to unpack .../176-r-cran-stringi_1.8.3-1_arm64.deb ... 482s Unpacking r-cran-stringi (1.8.3-1) ... 482s Selecting previously unselected package r-cran-stringr. 482s Preparing to unpack .../177-r-cran-stringr_1.5.1-1_all.deb ... 482s Unpacking r-cran-stringr (1.5.1-1) ... 482s Selecting previously unselected package r-cran-cpp11. 482s Preparing to unpack .../178-r-cran-cpp11_0.4.7-1_all.deb ... 482s Unpacking r-cran-cpp11 (0.4.7-1) ... 483s Selecting previously unselected package r-cran-tidyr. 483s Preparing to unpack .../179-r-cran-tidyr_1.3.1-1_arm64.deb ... 483s Unpacking r-cran-tidyr (1.3.1-1) ... 483s Selecting previously unselected package r-cran-broom. 483s Preparing to unpack .../180-r-cran-broom_1.0.5+dfsg-1_all.deb ... 483s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 483s Selecting previously unselected package r-cran-numderiv. 483s Preparing to unpack .../181-r-cran-numderiv_2016.8-1.1-3_all.deb ... 483s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 483s Selecting previously unselected package r-cran-xfun. 483s Preparing to unpack .../182-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 483s Unpacking r-cran-xfun (0.41+dfsg-1) ... 483s Selecting previously unselected package r-cran-highr. 483s Preparing to unpack .../183-r-cran-highr_0.10+dfsg-1_all.deb ... 483s Unpacking r-cran-highr (0.10+dfsg-1) ... 483s Selecting previously unselected package r-cran-yaml. 483s Preparing to unpack .../184-r-cran-yaml_2.3.8-1_arm64.deb ... 483s Unpacking r-cran-yaml (2.3.8-1) ... 483s Selecting previously unselected package libjs-mathjax. 483s Preparing to unpack .../185-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 483s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 483s Selecting previously unselected package r-cran-knitr. 483s Preparing to unpack .../186-r-cran-knitr_1.45+dfsg-1_all.deb ... 483s Unpacking r-cran-knitr (1.45+dfsg-1) ... 483s Selecting previously unselected package r-cran-pbkrtest. 483s Preparing to unpack .../187-r-cran-pbkrtest_0.5.2-2_all.deb ... 483s Unpacking r-cran-pbkrtest (0.5.2-2) ... 484s Selecting previously unselected package r-cran-sparsem. 484s Preparing to unpack .../188-r-cran-sparsem_1.81-1_arm64.deb ... 484s Unpacking r-cran-sparsem (1.81-1) ... 484s Selecting previously unselected package r-cran-matrixmodels. 484s Preparing to unpack .../189-r-cran-matrixmodels_0.5-3-1_all.deb ... 484s Unpacking r-cran-matrixmodels (0.5-3-1) ... 484s Selecting previously unselected package r-cran-rcpparmadillo. 484s Preparing to unpack .../190-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 484s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 484s Selecting previously unselected package r-cran-gtable. 484s Preparing to unpack .../191-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 484s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 484s Selecting previously unselected package r-cran-isoband. 484s Preparing to unpack .../192-r-cran-isoband_0.2.7-1_arm64.deb ... 484s Unpacking r-cran-isoband (0.2.7-1) ... 484s Selecting previously unselected package r-cran-farver. 484s Preparing to unpack .../193-r-cran-farver_2.1.1-1_arm64.deb ... 484s Unpacking r-cran-farver (2.1.1-1) ... 484s Selecting previously unselected package r-cran-labeling. 484s Preparing to unpack .../194-r-cran-labeling_0.4.3-1_all.deb ... 484s Unpacking r-cran-labeling (0.4.3-1) ... 484s Selecting previously unselected package r-cran-colorspace. 484s Preparing to unpack .../195-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 484s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 484s Selecting previously unselected package r-cran-munsell. 484s Preparing to unpack .../196-r-cran-munsell_0.5.0-2build1_all.deb ... 484s Unpacking r-cran-munsell (0.5.0-2build1) ... 484s Selecting previously unselected package r-cran-rcolorbrewer. 484s Preparing to unpack .../197-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 484s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 484s Selecting previously unselected package r-cran-viridislite. 484s Preparing to unpack .../198-r-cran-viridislite_0.4.2-2_all.deb ... 484s Unpacking r-cran-viridislite (0.4.2-2) ... 484s Selecting previously unselected package r-cran-scales. 484s Preparing to unpack .../199-r-cran-scales_1.3.0-1_all.deb ... 484s Unpacking r-cran-scales (1.3.0-1) ... 484s Selecting previously unselected package r-cran-ggplot2. 484s Preparing to unpack .../200-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 484s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 484s Selecting previously unselected package r-cran-class. 484s Preparing to unpack .../201-r-cran-class_7.3-22-2_arm64.deb ... 484s Unpacking r-cran-class (7.3-22-2) ... 484s Selecting previously unselected package r-cran-proxy. 484s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_arm64.deb ... 484s Unpacking r-cran-proxy (0.4-27-1) ... 484s Selecting previously unselected package r-cran-e1071. 484s Preparing to unpack .../203-r-cran-e1071_1.7-14-1_arm64.deb ... 484s Unpacking r-cran-e1071 (1.7-14-1) ... 484s Selecting previously unselected package r-cran-iterators. 484s Preparing to unpack .../204-r-cran-iterators_1.0.14-1_all.deb ... 484s Unpacking r-cran-iterators (1.0.14-1) ... 484s Selecting previously unselected package r-cran-foreach. 484s Preparing to unpack .../205-r-cran-foreach_1.5.2-1_all.deb ... 484s Unpacking r-cran-foreach (1.5.2-1) ... 484s Selecting previously unselected package r-cran-data.table. 484s Preparing to unpack .../206-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 484s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 485s Selecting previously unselected package r-cran-modelmetrics. 485s Preparing to unpack .../207-r-cran-modelmetrics_1.2.2.2-1build1_arm64.deb ... 485s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 485s Selecting previously unselected package r-cran-plyr. 485s Preparing to unpack .../208-r-cran-plyr_1.8.9-1_arm64.deb ... 485s Unpacking r-cran-plyr (1.8.9-1) ... 485s Selecting previously unselected package r-cran-proc. 485s Preparing to unpack .../209-r-cran-proc_1.18.5-1_arm64.deb ... 485s Unpacking r-cran-proc (1.18.5-1) ... 485s Selecting previously unselected package r-cran-tzdb. 485s Preparing to unpack .../210-r-cran-tzdb_0.4.0-2_arm64.deb ... 485s Unpacking r-cran-tzdb (0.4.0-2) ... 485s Selecting previously unselected package r-cran-clock. 485s Preparing to unpack .../211-r-cran-clock_0.7.0-1.1_arm64.deb ... 485s Unpacking r-cran-clock (0.7.0-1.1) ... 485s Selecting previously unselected package r-cran-gower. 485s Preparing to unpack .../212-r-cran-gower_1.0.1-1_arm64.deb ... 485s Unpacking r-cran-gower (1.0.1-1) ... 485s Selecting previously unselected package r-cran-hardhat. 485s Preparing to unpack .../213-r-cran-hardhat_1.3.1+dfsg-1_all.deb ... 485s Unpacking r-cran-hardhat (1.3.1+dfsg-1) ... 485s Selecting previously unselected package r-cran-shape. 485s Preparing to unpack .../214-r-cran-shape_1.4.6-1_all.deb ... 485s Unpacking r-cran-shape (1.4.6-1) ... 485s Selecting previously unselected package r-cran-diagram. 485s Preparing to unpack .../215-r-cran-diagram_1.6.5-2_all.deb ... 485s Unpacking r-cran-diagram (1.6.5-2) ... 485s Selecting previously unselected package r-cran-kernsmooth. 485s Preparing to unpack .../216-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 485s Unpacking r-cran-kernsmooth (2.23-22-1) ... 485s Selecting previously unselected package r-cran-globals. 485s Preparing to unpack .../217-r-cran-globals_0.16.2-1_all.deb ... 485s Unpacking r-cran-globals (0.16.2-1) ... 485s Selecting previously unselected package r-cran-listenv. 485s Preparing to unpack .../218-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 485s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 485s Selecting previously unselected package r-cran-parallelly. 485s Preparing to unpack .../219-r-cran-parallelly_1.37.1-1_arm64.deb ... 485s Unpacking r-cran-parallelly (1.37.1-1) ... 485s Selecting previously unselected package r-cran-future. 485s Preparing to unpack .../220-r-cran-future_1.33.1+dfsg-1_all.deb ... 485s Unpacking r-cran-future (1.33.1+dfsg-1) ... 485s Selecting previously unselected package r-cran-future.apply. 485s Preparing to unpack .../221-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 485s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 485s Selecting previously unselected package r-cran-progressr. 485s Preparing to unpack .../222-r-cran-progressr_0.14.0-1_all.deb ... 485s Unpacking r-cran-progressr (0.14.0-1) ... 485s Selecting previously unselected package r-cran-squarem. 485s Preparing to unpack .../223-r-cran-squarem_2021.1-1_all.deb ... 485s Unpacking r-cran-squarem (2021.1-1) ... 485s Selecting previously unselected package r-cran-lava. 485s Preparing to unpack .../224-r-cran-lava_1.7.3+dfsg-1_all.deb ... 485s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 485s Selecting previously unselected package r-cran-prodlim. 485s Preparing to unpack .../225-r-cran-prodlim_2023.08.28-1_arm64.deb ... 485s Unpacking r-cran-prodlim (2023.08.28-1) ... 485s Selecting previously unselected package r-cran-ipred. 486s Preparing to unpack .../226-r-cran-ipred_0.9-14-1_arm64.deb ... 486s Unpacking r-cran-ipred (0.9-14-1) ... 486s Selecting previously unselected package r-cran-timechange. 486s Preparing to unpack .../227-r-cran-timechange_0.3.0-1_arm64.deb ... 486s Unpacking r-cran-timechange (0.3.0-1) ... 486s Selecting previously unselected package r-cran-lubridate. 486s Preparing to unpack .../228-r-cran-lubridate_1.9.3+dfsg-1_arm64.deb ... 486s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 486s Selecting previously unselected package r-cran-timedate. 486s Preparing to unpack .../229-r-cran-timedate_4032.109-1_arm64.deb ... 486s Unpacking r-cran-timedate (4032.109-1) ... 486s Selecting previously unselected package r-cran-recipes. 486s Preparing to unpack .../230-r-cran-recipes_1.0.9+dfsg-1_all.deb ... 486s Unpacking r-cran-recipes (1.0.9+dfsg-1) ... 486s Selecting previously unselected package r-cran-reshape2. 486s Preparing to unpack .../231-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 486s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 486s Selecting previously unselected package r-cran-caret. 486s Preparing to unpack .../232-r-cran-caret_6.0-94+dfsg-1_arm64.deb ... 486s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 486s Selecting previously unselected package r-cran-conquer. 486s Preparing to unpack .../233-r-cran-conquer_1.3.3-1_arm64.deb ... 486s Unpacking r-cran-conquer (1.3.3-1) ... 486s Selecting previously unselected package r-cran-quantreg. 486s Preparing to unpack .../234-r-cran-quantreg_5.97-1_arm64.deb ... 486s Unpacking r-cran-quantreg (5.97-1) ... 486s Selecting previously unselected package r-cran-sp. 486s Preparing to unpack .../235-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 486s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 486s Selecting previously unselected package r-cran-foreign. 486s Preparing to unpack .../236-r-cran-foreign_0.8.86-1_arm64.deb ... 486s Unpacking r-cran-foreign (0.8.86-1) ... 486s Selecting previously unselected package r-cran-maptools. 486s Preparing to unpack .../237-r-cran-maptools_1%3a1.1-8+dfsg-1_arm64.deb ... 486s Unpacking r-cran-maptools (1:1.1-8+dfsg-1) ... 486s Selecting previously unselected package r-cran-forcats. 486s Preparing to unpack .../238-r-cran-forcats_1.0.0-1_all.deb ... 486s Unpacking r-cran-forcats (1.0.0-1) ... 486s Selecting previously unselected package r-cran-hms. 486s Preparing to unpack .../239-r-cran-hms_1.1.3-1_all.deb ... 486s Unpacking r-cran-hms (1.1.3-1) ... 486s Selecting previously unselected package r-cran-clipr. 486s Preparing to unpack .../240-r-cran-clipr_0.8.0-1_all.deb ... 486s Unpacking r-cran-clipr (0.8.0-1) ... 487s Selecting previously unselected package r-cran-bit. 487s Preparing to unpack .../241-r-cran-bit_4.0.5-1_arm64.deb ... 487s Unpacking r-cran-bit (4.0.5-1) ... 487s Selecting previously unselected package r-cran-bit64. 487s Preparing to unpack .../242-r-cran-bit64_4.0.5-1_arm64.deb ... 487s Unpacking r-cran-bit64 (4.0.5-1) ... 487s Selecting previously unselected package r-cran-prettyunits. 487s Preparing to unpack .../243-r-cran-prettyunits_1.2.0-1_all.deb ... 487s Unpacking r-cran-prettyunits (1.2.0-1) ... 487s Selecting previously unselected package r-cran-progress. 487s Preparing to unpack .../244-r-cran-progress_1.2.3-1_all.deb ... 487s Unpacking r-cran-progress (1.2.3-1) ... 487s Selecting previously unselected package r-cran-vroom. 487s Preparing to unpack .../245-r-cran-vroom_1.6.5-1_arm64.deb ... 487s Unpacking r-cran-vroom (1.6.5-1) ... 487s Selecting previously unselected package r-cran-readr. 487s Preparing to unpack .../246-r-cran-readr_2.1.5-1_arm64.deb ... 487s Unpacking r-cran-readr (2.1.5-1) ... 487s Selecting previously unselected package r-cran-haven. 487s Preparing to unpack .../247-r-cran-haven_2.5.4-1_arm64.deb ... 487s Unpacking r-cran-haven (2.5.4-1) ... 487s Selecting previously unselected package r-cran-curl. 487s Preparing to unpack .../248-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 487s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 487s Selecting previously unselected package r-cran-rematch. 487s Preparing to unpack .../249-r-cran-rematch_2.0.0-1_all.deb ... 487s Unpacking r-cran-rematch (2.0.0-1) ... 487s Selecting previously unselected package r-cran-cellranger. 487s Preparing to unpack .../250-r-cran-cellranger_1.1.0-3_all.deb ... 487s Unpacking r-cran-cellranger (1.1.0-3) ... 487s Selecting previously unselected package r-cran-readxl. 487s Preparing to unpack .../251-r-cran-readxl_1.4.3-1_arm64.deb ... 487s Unpacking r-cran-readxl (1.4.3-1) ... 487s Selecting previously unselected package r-cran-writexl. 487s Preparing to unpack .../252-r-cran-writexl_1.5.0-1_arm64.deb ... 487s Unpacking r-cran-writexl (1.5.0-1) ... 487s Selecting previously unselected package r-cran-r.methodss3. 487s Preparing to unpack .../253-r-cran-r.methodss3_1.8.2-1_all.deb ... 487s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 487s Selecting previously unselected package r-cran-r.oo. 487s Preparing to unpack .../254-r-cran-r.oo_1.26.0-1_all.deb ... 487s Unpacking r-cran-r.oo (1.26.0-1) ... 487s Selecting previously unselected package r-cran-r.utils. 488s Preparing to unpack .../255-r-cran-r.utils_2.12.3-1_all.deb ... 488s Unpacking r-cran-r.utils (2.12.3-1) ... 488s Selecting previously unselected package r-cran-zip. 488s Preparing to unpack .../256-r-cran-zip_2.3.1-1_arm64.deb ... 488s Unpacking r-cran-zip (2.3.1-1) ... 488s Selecting previously unselected package r-cran-openxlsx. 488s Preparing to unpack .../257-r-cran-openxlsx_4.2.5.2-1_arm64.deb ... 488s Unpacking r-cran-openxlsx (4.2.5.2-1) ... 488s Selecting previously unselected package r-cran-rio. 488s Preparing to unpack .../258-r-cran-rio_1.0.1-1_all.deb ... 488s Unpacking r-cran-rio (1.0.1-1) ... 488s Selecting previously unselected package r-cran-car. 488s Preparing to unpack .../259-r-cran-car_3.1-2-2_all.deb ... 488s Unpacking r-cran-car (3.1-2-2) ... 488s Selecting previously unselected package r-cran-lmtest. 488s Preparing to unpack .../260-r-cran-lmtest_0.9.40-1_arm64.deb ... 488s Unpacking r-cran-lmtest (0.9.40-1) ... 488s Selecting previously unselected package r-cran-aer. 488s Preparing to unpack .../261-r-cran-aer_1.2-12-1_all.deb ... 488s Unpacking r-cran-aer (1.2-12-1) ... 488s Selecting previously unselected package r-cran-psychotools. 488s Preparing to unpack .../262-r-cran-psychotools_0.7-3-1_arm64.deb ... 488s Unpacking r-cran-psychotools (0.7-3-1) ... 488s Selecting previously unselected package r-cran-psychotree. 488s Preparing to unpack .../263-r-cran-psychotree_0.16-0-1_all.deb ... 488s Unpacking r-cran-psychotree (0.16-0-1) ... 488s Selecting previously unselected package r-cran-randomforest. 488s Preparing to unpack .../264-r-cran-randomforest_4.7-1.1-1_arm64.deb ... 488s Unpacking r-cran-randomforest (4.7-1.1-1) ... 488s Selecting previously unselected package r-cran-rjava. 488s Preparing to unpack .../265-r-cran-rjava_1.0-11-1_arm64.deb ... 488s Unpacking r-cran-rjava (1.0-11-1) ... 488s Selecting previously unselected package r-cran-vcd. 488s Preparing to unpack .../266-r-cran-vcd_1%3a1.4-12-1_all.deb ... 488s Unpacking r-cran-vcd (1:1.4-12-1) ... 488s Selecting previously unselected package autopkgtest-satdep. 488s Preparing to unpack .../267-2-autopkgtest-satdep.deb ... 488s Unpacking autopkgtest-satdep (0) ... 488s Setting up r-cran-psychotools (0.7-3-1) ... 488s Setting up libxcb-dri3-0:arm64 (1.15-1) ... 488s Setting up liblcms2-2:arm64 (2.14-2) ... 488s Setting up r-cran-fs (1.6.3+dfsg-1) ... 488s Setting up r-cran-curl (5.2.0+dfsg-1) ... 488s Setting up r-cran-brio (1.1.4-1) ... 488s Setting up libx11-xcb1:arm64 (2:1.8.7-1) ... 488s Setting up r-cran-boot (1.3-30-1) ... 488s Setting up r-cran-rematch (2.0.0-1) ... 488s Setting up libdrm-nouveau2:arm64 (2.4.120-2) ... 488s Setting up r-cran-rlang (1.1.3-1) ... 488s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 488s Setting up libxdamage1:arm64 (1:1.1.6-1) ... 488s Setting up libxcb-xfixes0:arm64 (1.15-1) ... 488s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 488s Setting up r-cran-class (7.3-22-2) ... 488s Setting up hicolor-icon-theme (0.17-2) ... 488s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 488s Setting up libxi6:arm64 (2:1.8.1-1) ... 488s Setting up java-common (0.75+exp1) ... 488s Setting up r-cran-xfun (0.41+dfsg-1) ... 488s Setting up r-cran-withr (2.5.0-1) ... 488s Setting up r-cran-backports (1.4.1-1) ... 488s Setting up libdrm-radeon1:arm64 (2.4.120-2) ... 488s Setting up 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... 488s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 488s Setting up r-cran-glue (1.7.0-1) ... 488s Setting up r-cran-foreign (0.8.86-1) ... 488s Setting up r-cran-writexl (1.5.0-1) ... 488s Setting up r-cran-bit (4.0.5-1) ... 488s Setting up r-cran-cli (3.6.2-1) ... 488s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 488s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 488s Setting up r-cran-rprojroot (2.0.4-1) ... 488s Setting up r-cran-bit64 (4.0.5-1) ... 488s Setting up r-cran-progressr (0.14.0-1) ... 488s Setting up libxxf86vm1:arm64 (1:1.1.4-1build3) ... 488s Setting up r-cran-randomforest (4.7-1.1-1) ... 488s Setting up r-cran-shape (1.4.6-1) ... 488s Setting up libxcb-present0:arm64 (1.15-1) ... 488s Setting up libasound2-data (1.2.10-3build1) ... 488s Setting up r-cran-r.methodss3 (1.8.2-1) ... 488s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 488s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 488s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 488s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 488s Setting up r-cran-utf8 (1.2.4-1) ... 488s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 488s Setting up libpkgconf3:arm64 (1.8.1-2) ... 488s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 488s Setting up r-cran-parallelly (1.37.1-1) ... 488s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 488s Setting up r-cran-stringi (1.8.3-1) ... 488s Setting up libxfixes3:arm64 (1:6.0.0-2) ... 488s Setting up libxcb-sync1:arm64 (1.15-1) ... 488s Setting up r-cran-cpp11 (0.4.7-1) ... 488s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 488s Setting up libavahi-common-data:arm64 (0.8-13ubuntu2) ... 488s Setting up r-cran-isoband (0.2.7-1) ... 488s Setting up r-cran-diagram (1.6.5-2) ... 488s Setting up libxinerama1:arm64 (2:1.1.4-3) ... 488s Setting up r-cran-crayon (1.5.2-1) ... 488s Setting up r-cran-squarem (2021.1-1) ... 488s Setting up libmpc3:arm64 (1.3.1-1) ... 488s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 488s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 488s Setting up r-cran-labeling (0.4.3-1) ... 488s Setting up libxrandr2:arm64 (2:1.5.2-2) ... 488s Setting up icu-devtools (74.2-1ubuntu1) ... 488s Setting up libpcsclite1:arm64 (2.0.0-1) ... 488s Setting up pkgconf-bin (1.8.1-2) ... 488s Setting up r-cran-ps (1.7.6-1) ... 488s Setting up libglapi-mesa:arm64 (24.0.1-1ubuntu1) ... 488s Setting up r-cran-nlme (3.1.164-1) ... 488s Setting up libvulkan1:arm64 (1.3.275.0-1) ... 488s Setting up r-cran-farver (2.1.1-1) ... 488s Setting up r-cran-kernsmooth (2.23-22-1) ... 488s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 488s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 488s Setting up libxcb-dri2-0:arm64 (1.15-1) ... 488s Setting up libgif7:arm64 (5.2.1-2.5) ... 488s Setting up r-cran-zip (2.3.1-1) ... 488s Setting up r-cran-mgcv (1.9-1-1) ... 488s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 488s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 488s Setting up libnsl-dev:arm64 (1.3.0-3) ... 488s Setting up r-cran-viridislite (0.4.2-2) ... 488s Setting up libxshmfence1:arm64 (1.3-1build4) ... 488s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 488s Setting up at-spi2-common (2.50.0-1) ... 488s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 488s Setting up libxcb-randr0:arm64 (1.15-1) ... 488s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 488s Setting up r-cran-lmtest (0.9.40-1) ... 488s Setting up libasound2:arm64 (1.2.10-3build1) ... 488s Setting up r-cran-sparsem (1.81-1) ... 488s Setting up r-cran-statmod (1.5.0-1) ... 488s Setting up r-cran-nnet (7.3-19-2) ... 488s Setting up libgdk-pixbuf-2.0-0:arm64 (2.42.10+dfsg-3) ... 488s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 488s Setting up libatk1.0-0:arm64 (2.50.0-1) ... 488s Setting up r-cran-clipr (0.8.0-1) ... 488s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 488s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 488s Setting up r-cran-proxy (0.4-27-1) ... 488s Setting up ca-certificates-java (20240118) ... 488s No JRE found. 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(libblas.so-aarch64-linux-gnu) in auto mode 488s Setting up dctrl-tools (2.24-3build2) ... 488s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 488s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 488s Setting up libdrm-amdgpu1:arm64 (2.4.120-2) ... 488s Setting up r-cran-littler (0.3.19-1) ... 488s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 488s Setting up r-cran-ellipsis (0.3.2-2) ... 488s Setting up r-cran-rcpp (1.0.12-1) ... 488s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 488s Setting up r-cran-diffobj (0.3.5-1) ... 488s Setting up r-cran-stringr (1.5.1-1) ... 488s Setting up littler (0.3.19-1) ... 488s Setting up r-cran-modelmetrics (1.2.2.2-1build1) ... 488s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 488s Setting up r-cran-openxlsx (4.2.5.2-1) ... 488s Setting up r-cran-processx (3.8.3-1) ... 488s Setting up r-cran-desc (1.4.3-1) ... 488s Setting up libxcursor1:arm64 (1:1.2.1-1) ... 488s Setting up libgl1-mesa-dri:arm64 (24.0.1-1ubuntu1) ... 488s 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/usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 488s Setting up r-cran-lava (1.7.3+dfsg-1) ... 488s Setting up r-cran-purrr (1.0.2-1) ... 488s Setting up r-cran-e1071 (1.7-14-1) ... 488s Setting up pkg-config:arm64 (1.8.1-2) ... 488s Setting up r-cran-knitr (1.45+dfsg-1) ... 488s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 488s Setting up r-cran-hardhat (1.3.1+dfsg-1) ... 488s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 488s Setting up r-cran-dplyr (1.1.4-1) ... 488s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 488s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 488s Setting up r-cran-progress (1.2.3-1) ... 488s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 488s Setting up libavahi-client3:arm64 (0.8-13ubuntu2) ... 488s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 488s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 488s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 488s Setting up r-cran-minqa (1.2.6-1) ... 488s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 488s Setting up r-cran-r.utils (2.12.3-1) ... 488s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 488s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 488s Setting up r-cran-vroom (1.6.5-1) ... 488s Setting up libglx-mesa0:arm64 (24.0.1-1ubuntu1) ... 488s Setting up r-cran-prodlim (2023.08.28-1) ... 488s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 488s Setting up libglx0:arm64 (1.7.0-1) ... 488s Setting up cpp-13 (13.2.0-17ubuntu2) ... 488s Setting up r-cran-callr (3.7.3-2) ... 489s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 489s Setting up r-cran-cellranger (1.1.0-3) ... 489s Setting up r-cran-rematch2 (2.1.2-2build1) ... 489s Setting up r-cran-proc (1.18.5-1) ... 489s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 489s Setting up libreadline-dev:arm64 (8.2-3) ... 489s Setting up r-cran-ipred (0.9-14-1) ... 489s Setting up 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auto mode 489s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 489s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 489s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 489s update-alternatives: using /usr/lib/jvm/java-21-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 489s Setting up r-cran-haven (2.5.4-1) ... 489s Setting up libpng-dev:arm64 (1.6.43-1) ... 489s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 489s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 489s Setting up r-cran-caret (6.0-94+dfsg-1) ... 489s Setting up gcc (4:13.2.0-7ubuntu1) ... 489s Setting up r-cran-testthat (3.2.1-1) ... 489s Setting up r-cran-broom (1.0.5+dfsg-1) ... 489s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 489s Setting up r-cran-conquer (1.3.3-1) ... 489s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 489s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 489s Setting up r-cran-rio (1.0.1-1) ... 489s Setting up r-cran-nloptr (2.0.3-1) ... 489s Setting up r-cran-quantreg (5.97-1) ... 489s Setting up gfortran (4:13.2.0-7ubuntu1) ... 489s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 489s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 489s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 489s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 489s Setting up r-cran-lme4 (1.1-35.1-4) ... 489s Setting up r-cran-pbkrtest (0.5.2-2) ... 489s Setting up r-cran-car (3.1-2-2) ... 489s Setting up r-cran-aer (1.2-12-1) ... 489s Setting up g++ (4:13.2.0-7ubuntu1) ... 489s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 489s Setting up build-essential (12.10ubuntu1) ... 489s Setting up r-base-dev (4.3.2-1build1) ... 489s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 489s Setting up adwaita-icon-theme (46~rc-1) ... 489s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 489s Setting up libgtk2.0-0:arm64 (2.24.33-2ubuntu2) ... 489s Setting up humanity-icon-theme (0.6.16) ... 489s Setting up ubuntu-mono (24.04-0ubuntu1) ... 489s Processing triggers for man-db (2.12.0-3) ... 490s Processing triggers for install-info (7.1-3) ... 490s Processing triggers for fontconfig (2.15.0-1ubuntu1) ... 490s Processing triggers for libc-bin (2.39-0ubuntu2) ... 490s Processing triggers for ca-certificates-java (20240118) ... 491s Adding debian:ACCVRAIZ1.pem 491s Adding debian:AC_RAIZ_FNMT-RCM.pem 491s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 491s Adding debian:ANF_Secure_Server_Root_CA.pem 491s Adding debian:Actalis_Authentication_Root_CA.pem 491s Adding debian:AffirmTrust_Commercial.pem 491s Adding debian:AffirmTrust_Networking.pem 491s Adding debian:AffirmTrust_Premium.pem 491s Adding debian:AffirmTrust_Premium_ECC.pem 491s Adding debian:Amazon_Root_CA_1.pem 491s Adding debian:Amazon_Root_CA_2.pem 491s Adding debian:Amazon_Root_CA_3.pem 491s Adding debian:Amazon_Root_CA_4.pem 491s Adding debian:Atos_TrustedRoot_2011.pem 491s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 491s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 491s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 491s Adding debian:BJCA_Global_Root_CA1.pem 491s Adding debian:BJCA_Global_Root_CA2.pem 491s Adding debian:Baltimore_CyberTrust_Root.pem 491s Adding debian:Buypass_Class_2_Root_CA.pem 491s Adding debian:Buypass_Class_3_Root_CA.pem 491s Adding debian:CA_Disig_Root_R2.pem 491s Adding debian:CFCA_EV_ROOT.pem 491s Adding debian:COMODO_Certification_Authority.pem 491s Adding debian:COMODO_ECC_Certification_Authority.pem 491s Adding debian:COMODO_RSA_Certification_Authority.pem 491s Adding debian:Certainly_Root_E1.pem 491s Adding debian:Certainly_Root_R1.pem 491s Adding debian:Certigna.pem 491s Adding debian:Certigna_Root_CA.pem 491s Adding debian:Certum_EC-384_CA.pem 491s Adding debian:Certum_Trusted_Network_CA.pem 491s Adding debian:Certum_Trusted_Network_CA_2.pem 491s Adding debian:Certum_Trusted_Root_CA.pem 491s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 491s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 491s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 491s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 491s Adding debian:Comodo_AAA_Services_root.pem 491s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 491s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 491s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 491s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 491s Adding debian:DigiCert_Assured_ID_Root_CA.pem 491s Adding debian:DigiCert_Assured_ID_Root_G2.pem 491s Adding debian:DigiCert_Assured_ID_Root_G3.pem 491s Adding debian:DigiCert_Global_Root_CA.pem 491s Adding debian:DigiCert_Global_Root_G2.pem 491s Adding debian:DigiCert_Global_Root_G3.pem 491s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 491s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 491s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 491s Adding debian:DigiCert_Trusted_Root_G4.pem 491s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 491s Adding debian:Entrust_Root_Certification_Authority.pem 491s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 491s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 491s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 491s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 491s Adding debian:GLOBALTRUST_2020.pem 491s Adding debian:GTS_Root_R1.pem 491s Adding debian:GTS_Root_R2.pem 491s Adding debian:GTS_Root_R3.pem 491s Adding debian:GTS_Root_R4.pem 491s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 491s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 491s Adding debian:GlobalSign_Root_CA.pem 491s Adding debian:GlobalSign_Root_CA_-_R3.pem 491s Adding debian:GlobalSign_Root_CA_-_R6.pem 491s Adding debian:GlobalSign_Root_E46.pem 491s Adding debian:GlobalSign_Root_R46.pem 491s Adding debian:Go_Daddy_Class_2_CA.pem 491s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 491s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 491s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 491s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 491s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 491s Adding debian:HiPKI_Root_CA_-_G1.pem 491s Adding debian:Hongkong_Post_Root_CA_3.pem 491s Adding debian:ISRG_Root_X1.pem 491s Adding debian:ISRG_Root_X2.pem 491s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 491s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 491s Adding debian:Izenpe.com.pem 491s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 491s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 491s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 491s Adding debian:NAVER_Global_Root_Certification_Authority.pem 491s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 491s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 491s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 491s Adding debian:QuoVadis_Root_CA_1_G3.pem 491s Adding debian:QuoVadis_Root_CA_2.pem 491s Adding debian:QuoVadis_Root_CA_2_G3.pem 491s Adding debian:QuoVadis_Root_CA_3.pem 491s Adding debian:QuoVadis_Root_CA_3_G3.pem 491s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 491s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 491s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 491s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 491s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 491s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 491s Adding debian:SZAFIR_ROOT_CA2.pem 491s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 491s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 491s Adding debian:SecureSign_RootCA11.pem 491s Adding debian:SecureTrust_CA.pem 491s Adding debian:Secure_Global_CA.pem 491s Adding debian:Security_Communication_ECC_RootCA1.pem 491s Adding debian:Security_Communication_RootCA2.pem 491s Adding debian:Security_Communication_RootCA3.pem 491s Adding debian:Security_Communication_Root_CA.pem 491s Adding debian:Starfield_Class_2_CA.pem 491s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 491s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 491s Adding debian:SwissSign_Gold_CA_-_G2.pem 491s Adding debian:SwissSign_Silver_CA_-_G2.pem 491s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 491s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 491s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 491s Adding debian:TWCA_Global_Root_CA.pem 491s Adding debian:TWCA_Root_Certification_Authority.pem 491s Adding debian:TeliaSonera_Root_CA_v1.pem 491s Adding debian:Telia_Root_CA_v2.pem 491s Adding debian:TrustAsia_Global_Root_CA_G3.pem 491s Adding debian:TrustAsia_Global_Root_CA_G4.pem 491s Adding debian:Trustwave_Global_Certification_Authority.pem 491s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 491s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 491s Adding debian:TunTrust_Root_CA.pem 491s Adding debian:UCA_Extended_Validation_Root.pem 491s Adding debian:UCA_Global_G2_Root.pem 491s Adding debian:USERTrust_ECC_Certification_Authority.pem 491s Adding debian:USERTrust_RSA_Certification_Authority.pem 491s Adding debian:XRamp_Global_CA_Root.pem 491s Adding debian:certSIGN_ROOT_CA.pem 491s Adding debian:certSIGN_Root_CA_G2.pem 491s Adding debian:e-Szigno_Root_CA_2017.pem 491s Adding debian:ePKI_Root_Certification_Authority.pem 491s Adding debian:emSign_ECC_Root_CA_-_C3.pem 491s Adding debian:emSign_ECC_Root_CA_-_G3.pem 491s Adding debian:emSign_Root_CA_-_C1.pem 491s Adding debian:emSign_Root_CA_-_G1.pem 491s Adding debian:vTrus_ECC_Root_CA.pem 491s Adding debian:vTrus_Root_CA.pem 491s done. 491s Setting up openjdk-21-jre:arm64 (21.0.2+13-2) ... 491s Setting up default-jre-headless (2:1.21-75+exp1) ... 491s Setting up default-jre (2:1.21-75+exp1) ... 491s Setting up r-cran-rjava (1.0-11-1) ... 491s Setting up autopkgtest-satdep (0) ... 494s (Reading database ... 113200 files and directories currently installed.) 494s Removing autopkgtest-satdep (0) ... 494s autopkgtest [19:33:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 494s autopkgtest [19:33:24]: test pkg-r-autopkgtest: [----------------------- 495s Test: Try to load the R library partykit 495s 495s R version 4.3.2 (2023-10-31) -- "Eye Holes" 495s Copyright (C) 2023 The R Foundation for Statistical Computing 495s Platform: aarch64-unknown-linux-gnu (64-bit) 495s 495s R is free software and comes with ABSOLUTELY NO WARRANTY. 495s You are welcome to redistribute it under certain conditions. 495s Type 'license()' or 'licence()' for distribution details. 495s 495s R is a collaborative project with many contributors. 495s Type 'contributors()' for more information and 495s 'citation()' on how to cite R or R packages in publications. 495s 495s Type 'demo()' for some demos, 'help()' for on-line help, or 495s 'help.start()' for an HTML browser interface to help. 495s Type 'q()' to quit R. 495s 495s > library('partykit') 495s Loading required package: grid 495s Loading required package: libcoin 495s Loading required package: mvtnorm 496s > 496s > 496s Other tests are currently unsupported! 496s They will be progressively added. 497s autopkgtest [19:33:27]: test pkg-r-autopkgtest: -----------------------] 497s pkg-r-autopkgtest PASS 497s autopkgtest [19:33:27]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 497s autopkgtest [19:33:27]: @@@@@@@@@@@@@@@@@@@@ summary 497s run-unit-test PASS 497s pkg-r-autopkgtest PASS 508s Creating nova instance adt-noble-arm64-r-cran-partykit-20240316-192510-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...