0s autopkgtest [19:02:05]: starting date and time: 2024-03-16 19:02:05+0000 0s autopkgtest [19:02:05]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [19:02:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gtqus39s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-libcoin --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-17.secgroup --name adt-noble-arm64-r-cran-libcoin-20240316-190205-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 92s autopkgtest [19:03:37]: testbed dpkg architecture: arm64 92s autopkgtest [19:03:37]: testbed apt version: 2.7.12 92s autopkgtest [19:03:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 94s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 94s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 94s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 94s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 94s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 94s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 94s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 94s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 94s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 100s Fetched 9084 kB in 3s (3360 kB/s) 100s Reading package lists... 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 106s The following packages will be REMOVED: 106s libglib2.0-0 libssl3 106s The following NEW packages will be installed: 106s libglib2.0-0t64 libssl3t64 xdg-user-dirs 106s The following packages have been kept back: 106s curl 106s The following packages will be upgraded: 106s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 106s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 106s Need to get 4592 kB of archives. 106s After this operation, 211 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 106s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 107s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 107s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 107s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 107s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 107s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 107s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 107s Fetched 4592 kB in 1s (5970 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 108s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 108s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 108s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 108s udisks2 depends on libglib2.0-0 (>= 2.77.0). 108s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 108s python3-gi depends on libglib2.0-0 (>= 2.77.0). 108s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 108s netplan.io depends on libglib2.0-0 (>= 2.70.0). 108s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 108s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 108s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 108s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 108s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 108s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 108s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 108s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 108s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 108s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 108s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 108s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 108s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 108s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 108s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 108s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 108s fwupd depends on libglib2.0-0 (>= 2.79.0). 108s bolt depends on libglib2.0-0 (>= 2.56.0). 108s 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 108s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 108s Selecting previously unselected package libglib2.0-0t64:arm64. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 108s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 108s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 108s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 108s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 108s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 108s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 109s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 109s wget depends on libssl3 (>= 3.0.0). 109s u-boot-tools depends on libssl3 (>= 3.0.0). 109s tnftp depends on libssl3 (>= 3.0.0). 109s tcpdump depends on libssl3 (>= 3.0.0). 109s systemd-resolved depends on libssl3 (>= 3.0.0). 109s systemd depends on libssl3 (>= 3.0.0). 109s sudo depends on libssl3 (>= 3.0.0). 109s sbsigntool depends on libssl3 (>= 3.0.0). 109s rsync depends on libssl3 (>= 3.0.0). 109s python3-cryptography depends on libssl3 (>= 3.0.0). 109s openssh-server depends on libssl3 (>= 3.0.10). 109s openssh-client depends on libssl3 (>= 3.0.10). 109s mtd-utils depends on libssl3 (>= 3.0.0). 109s mokutil depends on libssl3 (>= 3.0.0). 109s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 109s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 109s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 109s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 109s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 109s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 109s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 109s libnvme1 depends on libssl3 (>= 3.0.0). 109s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 109s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 109s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 109s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 109s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 109s kmod depends on libssl3 (>= 3.0.0). 109s dhcpcd-base depends on libssl3 (>= 3.0.0). 109s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 109s 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 109s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 109s Selecting previously unselected package libssl3t64:arm64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 109s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 109s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 109s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 109s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 109s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 109s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 109s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 109s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 109s Selecting previously unselected package xdg-user-dirs. 109s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 109s Unpacking xdg-user-dirs (0.18-1) ... 109s Setting up xdg-user-dirs (0.18-1) ... 109s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 109s Setting up libtirpc-common (1.3.4+ds-1.1) ... 109s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 109s No schema files found: doing nothing. 109s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 109s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 109s Setting up openssl (3.0.13-0ubuntu1) ... 109s Setting up readline-common (8.2-3.1) ... 109s Processing triggers for man-db (2.12.0-3) ... 110s Processing triggers for install-info (7.1-3) ... 110s Processing triggers for libc-bin (2.39-0ubuntu2) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 116s Reading package lists... 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s The following packages have been kept back: 118s curl 118s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 122s autopkgtest [19:04:07]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 123s autopkgtest [19:04:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-libcoin 125s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-libcoin 1.0-10-1 (dsc) [2121 B] 125s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-libcoin 1.0-10-1 (tar) [848 kB] 125s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-libcoin 1.0-10-1 (diff) [2468 B] 125s gpgv: Signature made Sat Oct 14 06:06:56 2023 UTC 125s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 125s gpgv: issuer "tille@debian.org" 125s gpgv: Can't check signature: No public key 125s dpkg-source: warning: cannot verify inline signature for ./r-cran-libcoin_1.0-10-1.dsc: no acceptable signature found 125s autopkgtest [19:04:10]: testing package r-cran-libcoin version 1.0-10-1 126s autopkgtest [19:04:11]: build not needed 127s autopkgtest [19:04:12]: test run-unit-test: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 131s The following additional packages will be installed: 131s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 131s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 131s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 131s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 131s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 131s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 131s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 131s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 131s r-cran-codetools r-cran-coin r-cran-lattice r-cran-libcoin r-cran-mass 131s r-cran-matrix r-cran-matrixstats r-cran-modeltools r-cran-multcomp 131s r-cran-mvtnorm r-cran-sandwich r-cran-survival r-cran-th.data r-cran-zoo 131s unzip x11-common xdg-utils zip 131s Suggested packages: 131s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 131s Recommended packages: 131s r-recommended r-base-dev r-doc-html r-cran-xtable r-cran-e1071 r-cran-vcd 131s r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown 131s r-cran-r.devices r-cran-r.rsp libfile-mimeinfo-perl libnet-dbus-perl 131s libx11-protocol-perl x11-utils x11-xserver-utils 131s The following packages will be REMOVED: 131s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 131s The following NEW packages will be installed: 131s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 131s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 131s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 131s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 131s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 131s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 131s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 131s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 131s r-cran-codetools r-cran-coin r-cran-lattice r-cran-libcoin r-cran-mass 131s r-cran-matrix r-cran-matrixstats r-cran-modeltools r-cran-multcomp 131s r-cran-mvtnorm r-cran-sandwich r-cran-survival r-cran-th.data r-cran-zoo 131s unzip x11-common xdg-utils zip 131s The following packages will be upgraded: 131s curl 131s 1 upgraded, 64 newly installed, 5 to remove and 0 not upgraded. 131s Need to get 65.8 MB/65.8 MB of archives. 131s After this operation, 114 MB of additional disk space will be used. 131s Get:1 /tmp/autopkgtest.MGTMW1/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 132s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 132s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 132s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 132s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 132s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 132s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 132s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 132s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 132s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 132s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 132s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 132s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 132s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 132s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 132s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 132s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 132s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 132s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 132s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 132s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 132s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 132s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 132s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 132s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 132s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 132s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 132s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 132s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 132s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 132s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 132s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 132s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 132s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 132s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 132s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 132s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 132s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 132s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 132s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 132s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 132s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 132s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 132s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 132s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 133s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 133s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 133s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 133s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 134s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mvtnorm arm64 1.2-4-1 [723 kB] 134s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-libcoin arm64 1.0-10-1 [766 kB] 134s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 134s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modeltools all 0.2-23-2build1 [219 kB] 134s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 134s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-th.data all 1.1-2-2 [8794 kB] 134s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 134s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 134s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-multcomp all 1.4-25-1 [709 kB] 134s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-coin arm64 1.4-3-1 [1559 kB] 135s Preconfiguring packages ... 135s Fetched 65.8 MB in 3s (24.8 MB/s) 135s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 135s wget depends on libpsl5 (>= 0.16.0). 135s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 135s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 135s 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 135s Removing libpsl5:arm64 (0.21.2-1build1) ... 135s Selecting previously unselected package libpsl5t64:arm64. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 135s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 135s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 135s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 135s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 135s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 135s Selecting previously unselected package libcurl4t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 136s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 136s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 136s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 136s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 136s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 136s 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 136s Removing libpng16-16:arm64 (1.6.43-1) ... 136s Selecting previously unselected package libpng16-16t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 136s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 136s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 136s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 136s parted depends on libreadline8 (>= 6.0). 136s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 136s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 136s gpgsm depends on libreadline8 (>= 6.0). 136s gpgconf depends on libreadline8 (>= 6.0). 136s gpg depends on libreadline8 (>= 6.0). 136s gawk depends on libreadline8 (>= 6.0). 136s fdisk depends on libreadline8 (>= 6.0). 136s 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 136s Removing libreadline8:arm64 (8.2-3) ... 136s Selecting previously unselected package libreadline8t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 136s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 136s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 136s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 136s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 136s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 136s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 136s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 136s lsof depends on libtirpc3 (>= 1.0.2). 136s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 136s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 136s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 136s iproute2 depends on libtirpc3 (>= 1.0.2). 136s 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 136s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 137s Selecting previously unselected package libtirpc3t64:arm64. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 137s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 137s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 137s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 137s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 137s Selecting previously unselected package fonts-dejavu-mono. 137s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 137s Unpacking fonts-dejavu-mono (2.37-8) ... 137s Selecting previously unselected package fonts-dejavu-core. 137s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 137s Unpacking fonts-dejavu-core (2.37-8) ... 137s Selecting previously unselected package fontconfig-config. 137s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 137s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 137s Selecting previously unselected package libfontconfig1:arm64. 137s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 137s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 138s Selecting previously unselected package fontconfig. 138s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 138s Unpacking fontconfig (2.15.0-1ubuntu1) ... 138s Selecting previously unselected package libblas3:arm64. 138s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 138s Unpacking libblas3:arm64 (3.12.0-3) ... 138s Selecting previously unselected package libpixman-1-0:arm64. 138s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 138s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 138s Selecting previously unselected package libxcb-render0:arm64. 138s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 138s Unpacking libxcb-render0:arm64 (1.15-1) ... 138s Selecting previously unselected package libxcb-shm0:arm64. 138s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 138s Unpacking libxcb-shm0:arm64 (1.15-1) ... 138s Selecting previously unselected package libxrender1:arm64. 138s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 138s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 138s Selecting previously unselected package libcairo2:arm64. 138s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 138s Unpacking libcairo2:arm64 (1.18.0-1) ... 138s Selecting previously unselected package libdatrie1:arm64. 138s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 138s Unpacking libdatrie1:arm64 (0.2.13-3) ... 138s Selecting previously unselected package libdeflate0:arm64. 138s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 138s Unpacking libdeflate0:arm64 (1.19-1) ... 138s Selecting previously unselected package libgfortran5:arm64. 138s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libgomp1:arm64. 138s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libgraphite2-3:arm64. 138s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 138s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 138s Selecting previously unselected package libharfbuzz0b:arm64. 138s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_arm64.deb ... 138s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 138s Selecting previously unselected package x11-common. 138s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu2_all.deb ... 138s Unpacking x11-common (1:7.7+23ubuntu2) ... 138s Selecting previously unselected package libice6:arm64. 138s Preparing to unpack .../19-libice6_2%3a1.0.10-1build2_arm64.deb ... 138s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 139s Selecting previously unselected package libjpeg-turbo8:arm64. 139s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 139s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 139s Selecting previously unselected package libjpeg8:arm64. 139s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_arm64.deb ... 139s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 139s Selecting previously unselected package liblapack3:arm64. 139s Preparing to unpack .../22-liblapack3_3.12.0-3_arm64.deb ... 139s Unpacking liblapack3:arm64 (3.12.0-3) ... 139s Selecting previously unselected package liblerc4:arm64. 139s Preparing to unpack .../23-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 139s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 139s Selecting previously unselected package libthai-data. 139s Preparing to unpack .../24-libthai-data_0.1.29-2_all.deb ... 139s Unpacking libthai-data (0.1.29-2) ... 139s Selecting previously unselected package libthai0:arm64. 139s Preparing to unpack .../25-libthai0_0.1.29-2_arm64.deb ... 139s Unpacking libthai0:arm64 (0.1.29-2) ... 139s Selecting previously unselected package libpango-1.0-0:arm64. 139s Preparing to unpack .../26-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 139s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 139s Selecting previously unselected package libpangoft2-1.0-0:arm64. 139s Preparing to unpack .../27-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 139s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 139s Selecting previously unselected package libpangocairo-1.0-0:arm64. 139s Preparing to unpack .../28-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 139s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 139s Selecting previously unselected package libpaper1:arm64. 139s Preparing to unpack .../29-libpaper1_1.1.29_arm64.deb ... 139s Unpacking libpaper1:arm64 (1.1.29) ... 139s Selecting previously unselected package libpaper-utils. 139s Preparing to unpack .../30-libpaper-utils_1.1.29_arm64.deb ... 139s Unpacking libpaper-utils (1.1.29) ... 139s Selecting previously unselected package libsharpyuv0:arm64. 139s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_arm64.deb ... 139s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 139s Selecting previously unselected package libsm6:arm64. 139s Preparing to unpack .../32-libsm6_2%3a1.2.3-1build2_arm64.deb ... 139s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 139s Selecting previously unselected package libtcl8.6:arm64. 139s Preparing to unpack .../33-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 139s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 140s Selecting previously unselected package libjbig0:arm64. 140s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 140s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 140s Selecting previously unselected package libwebp7:arm64. 140s Preparing to unpack .../35-libwebp7_1.3.2-0.4_arm64.deb ... 140s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 140s Selecting previously unselected package libtiff6:arm64. 140s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 140s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 140s Selecting previously unselected package libxft2:arm64. 140s Preparing to unpack .../37-libxft2_2.3.6-1_arm64.deb ... 140s Unpacking libxft2:arm64 (2.3.6-1) ... 140s Selecting previously unselected package libxss1:arm64. 140s Preparing to unpack .../38-libxss1_1%3a1.2.3-1build2_arm64.deb ... 140s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 140s Selecting previously unselected package libtk8.6:arm64. 140s Preparing to unpack .../39-libtk8.6_8.6.13-2_arm64.deb ... 140s Unpacking libtk8.6:arm64 (8.6.13-2) ... 140s Selecting previously unselected package libxt6t64:arm64. 140s Preparing to unpack .../40-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 140s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 140s Selecting previously unselected package zip. 140s Preparing to unpack .../41-zip_3.0-13_arm64.deb ... 140s Unpacking zip (3.0-13) ... 140s Selecting previously unselected package unzip. 140s Preparing to unpack .../42-unzip_6.0-28ubuntu3_arm64.deb ... 140s Unpacking unzip (6.0-28ubuntu3) ... 140s Selecting previously unselected package xdg-utils. 140s Preparing to unpack .../43-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 140s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 140s Selecting previously unselected package r-base-core. 140s Preparing to unpack .../44-r-base-core_4.3.3-2build1_arm64.deb ... 140s Unpacking 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... 149s Setting up r-cran-mass (7.3-60.0.1-1) ... 149s Setting up r-cran-mvtnorm (1.2-4-1) ... 149s Setting up r-cran-zoo (1.8-12-2) ... 149s Setting up r-cran-matrix (1.6-5-1) ... 149s Setting up r-cran-libcoin (1.0-10-1) ... 149s Setting up r-cran-sandwich (3.1-0-1) ... 149s Setting up r-cran-survival (3.5-8-1) ... 149s Setting up r-cran-th.data (1.1-2-2) ... 149s Setting up r-cran-multcomp (1.4-25-1) ... 149s Setting up r-cran-coin (1.4-3-1) ... 149s Setting up autopkgtest-satdep (0) ... 149s Processing triggers for man-db (2.12.0-3) ... 150s Processing triggers for install-info (7.1-3) ... 150s Processing triggers for libc-bin (2.39-0ubuntu2) ... 157s (Reading database ... 78957 files and directories currently installed.) 157s Removing autopkgtest-satdep (0) ... 158s autopkgtest [19:04:43]: test run-unit-test: [----------------------- 159s BEGIN TEST bugfixes.R 159s 159s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 159s Copyright (C) 2024 The R Foundation for Statistical Computing 159s Platform: aarch64-unknown-linux-gnu (64-bit) 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > 159s > library("libcoin") 159s > 159s > ### by Henric Winell 159s > set.seed(29) 159s > X <- runif(10) 159s > Y <- runif(10) 159s > o <- LinStatExpCov(X, Y) 159s > ov <- LinStatExpCov(X, Y, varonly = TRUE) 159s > stopifnot(all.equal(doTest(o, teststat = "scalar"), 159s + doTest(ov, teststat = "scalar"))) 159s > 159s > ### all weights = 0 and no weights at all was treated the same 159s > X <- as.double(1:10) 159s > Y <- as.double(10:1) 159s > sum(X*Y) 159s [1] 220 159s > cl <- gl(2, 5) 159s > 159s > ### linstat = 220 159s > w <- as.integer(rep(1, 10)) 159s > LinStatExpCov(X = X, Y = Y) 159s $LinearStatistic 159s [1] 220 159s 159s $Expectation 159s [1] 302.5 159s 159s $Covariance 159s [1] 756.25 159s 159s $Variance 159s [1] 756.25 159s 159s $ExpectationX 159s [1] 55 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 5.5 159s 159s $CovarianceInfluence 159s [1] 8.25 159s 159s $VarianceInfluence 159s [1] 8.25 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 10 159s 159s $Sumweights 159s [1] 10 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > LinStatExpCov(X = X, Y = Y, weights = w) 159s $LinearStatistic 159s [1] 220 159s 159s $Expectation 159s [1] 302.5 159s 159s $Covariance 159s [1] 756.25 159s 159s $Variance 159s [1] 756.25 159s 159s $ExpectationX 159s [1] 55 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 5.5 159s 159s $CovarianceInfluence 159s [1] 8.25 159s 159s $VarianceInfluence 159s [1] 8.25 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 10 159s 159s $Sumweights 159s [1] 10 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > LinStatExpCov(X = X, Y = Y, weights = w, block = cl) 159s $LinearStatistic 159s [1] 220 159s 159s $Expectation 159s [1] 240 159s 159s $Covariance 159s [1] 50 159s 159s $Variance 159s [1] 50 159s 159s $ExpectationX 159s [1] 55 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 8 3 159s 159s $CovarianceInfluence 159s [1] 2 2 159s 159s $VarianceInfluence 159s [1] 2 2 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 5 5 159s 159s $Sumweights 159s [1] 5 5 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > 159s > ### linstat = 0 159s > w <- as.integer(rep(0, 10)) 159s > LinStatExpCov(X = X, Y = Y, weights = w) 159s $LinearStatistic 159s [1] 0 159s 159s $Expectation 159s [1] 0 159s 159s $Covariance 159s [1] 0 159s 159s $Variance 159s [1] 0 159s 159s $ExpectationX 159s [1] 0 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 0 159s 159s $CovarianceInfluence 159s [1] 0 159s 159s $VarianceInfluence 159s [1] 0 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 10 159s 159s $Sumweights 159s [1] 0 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > LinStatExpCov(X = X, Y = Y, weights = w, block = cl) 159s $LinearStatistic 159s [1] 0 159s 159s $Expectation 159s [1] 0 159s 159s $Covariance 159s [1] 0 159s 159s $Variance 159s [1] 0 159s 159s $ExpectationX 159s [1] 0 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 0 0 159s 159s $CovarianceInfluence 159s [1] 0 0 159s 159s $VarianceInfluence 159s [1] 0 0 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 5 5 159s 159s $Sumweights 159s [1] 0 0 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > 159s > ### linstat = 110 159s > w <- as.integer(rep(0, 10)) 159s > w[1:5] <- 1L 159s > LinStatExpCov(X = X, Y = Y, subset = 1:5) 159s $LinearStatistic 159s [1] 110 159s 159s $Expectation 159s [1] 120 159s 159s $Covariance 159s [1] 25 159s 159s $Variance 159s [1] 25 159s 159s $ExpectationX 159s [1] 15 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 8 159s 159s $CovarianceInfluence 159s [1] 2 159s 159s $VarianceInfluence 159s [1] 2 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 5 159s 159s $Sumweights 159s [1] 5 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > LinStatExpCov(X = X, Y = Y, weights = w) 159s $LinearStatistic 159s [1] 110 159s 159s $Expectation 159s [1] 120 159s 159s $Covariance 159s [1] 25 159s 159s $Variance 159s [1] 25 159s 159s $ExpectationX 159s [1] 15 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 8 159s 159s $CovarianceInfluence 159s [1] 2 159s 159s $VarianceInfluence 159s [1] 2 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 10 159s 159s $Sumweights 159s [1] 5 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > LinStatExpCov(X = X, Y = Y, weights = w, block = cl) 159s $LinearStatistic 159s [1] 110 159s 159s $Expectation 159s [1] 120 159s 159s $Covariance 159s [1] 25 159s 159s $Variance 159s [1] 25 159s 159s $ExpectationX 159s [1] 15 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 8 0 159s 159s $CovarianceInfluence 159s [1] 2 0 159s 159s $VarianceInfluence 159s [1] 2 0 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 5 5 159s 159s $Sumweights 159s [1] 5 0 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > 159s > ### linstat = 0 159s > LinStatExpCov(X = X, Y = Y, weights = w, subset = 6:10) 159s $LinearStatistic 159s [1] 0 159s 159s $Expectation 159s [1] 0 159s 159s $Covariance 159s [1] 0 159s 159s $Variance 159s [1] 0 159s 159s $ExpectationX 159s [1] 0 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 0 159s 159s $CovarianceInfluence 159s [1] 0 159s 159s $VarianceInfluence 159s [1] 0 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 5 159s 159s $Sumweights 159s [1] 0 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > LinStatExpCov(X = X, Y = Y, weights = w, block = cl, subset = 6:10) 159s $LinearStatistic 159s [1] 0 159s 159s $Expectation 159s [1] 0 159s 159s $Covariance 159s [1] 0 159s 159s $Variance 159s [1] 0 159s 159s $ExpectationX 159s [1] 0 159s 159s $varonly 159s [1] FALSE 159s 159s $dimension 159s [1] 1 1 159s 159s $ExpectationInfluence 159s [1] 0 0 159s 159s $CovarianceInfluence 159s [1] 0 0 159s 159s $VarianceInfluence 159s [1] 0 0 159s 159s $Xfactor 159s [1] FALSE 159s 159s $tol 159s [1] 1.490116e-08 159s 159s $PermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $StandardisedPermutedLinearStatistic 159s <0 x 0 matrix> 159s 159s $TableBlock 159s [1] 0 0 5 159s 159s $Sumweights 159s [1] 0 0 159s 159s $Table 159s NULL 159s 159s attr(,"class") 159s [1] "LinStatExpCov1d" "LinStatExpCov" 159s > 159s > ### missing values in 1d and 2d case 159s > x <- gl(6, 20) 159s > y <- gl(3, 40) 159s > x[sample(1:length(x), 10)] <- NA 159s > y[sample(1:length(y), 10)] <- NA 159s > 159s > X <- matrix(NA, nrow = length(x), ncol = nlevels(x)) 159s > X[!is.na(x),] <- model.matrix(~ x - 1) 159s > Y <- matrix(NA, nrow = length(y), ncol = nlevels(y)) 159s > Y[!is.na(y),] <- model.matrix(~ y - 1) 159s > 159s > lev1 <- LinStatExpCov(X = X, Y = Y) 159s > lev1$Sumweights 159s [1] 100 159s > t1 <- doTest(lev1, teststat = "quadratic") 159s > 159s > X <- rbind(0, diag(nlevels(x))) 159s > Y <- rbind(0, diag(nlevels(y))) 159s > ix <- unclass(x) 159s > ix[is.na(ix)] <- 0L 159s > iy <- unclass(y) 159s > iy[is.na(iy)] <- 0L 159s > levels(ix) <- levels(x) 159s > levels(iy) <- levels(y) 159s > 159s > lev2 <- LinStatExpCov(X = X, Y = Y, ix = ix, iy = iy) 159s > lev2$Sumweights 159s [1] 100 159s > t2 <- doTest(lev2, teststat = "quadratic") 159s > stopifnot(all.equal(t1, t2)) 159s > 159s > ### unnecessary memory allocation; fixed in 1.0-2 159s > N <- 146341L 159s > y <- runif(N) 159s > x <- 1:N 159s > lev1 <- LinStatExpCov(X = x, Y = y, varonly = TRUE) 159s > # Note: N * (N + 1) / 2 > .Machine$integer.max 159s > try(lev2 <- LinStatExpCov(X = x, Y = y, varonly = FALSE)) 159s > 159s > 159s Error in .LinStatExpCov1d(X = X, Y = Y, weights = weights, subset = subset, : 159s cannot allocate memory: number of levels too large 159s BEGIN TEST regtest_ctabs.R 159s 159s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 159s Copyright (C) 2024 The R Foundation for Statistical Computing 159s Platform: aarch64-unknown-linux-gnu (64-bit) 159s 159s R is free software and comes with ABSOLUTELY NO WARRANTY. 159s You are welcome to redistribute it under certain conditions. 159s Type 'license()' or 'licence()' for distribution details. 159s 159s R is a collaborative project with many contributors. 159s Type 'contributors()' for more information and 159s 'citation()' on how to cite R or R packages in publications. 159s 159s Type 'demo()' for some demos, 'help()' for on-line help, or 159s 'help.start()' for an HTML browser interface to help. 159s Type 'q()' to quit R. 159s 159s > 159s > library("libcoin") 159s > 159s > x <- 1:6 159s > y <- rep(1:3, length.out = 6) 159s > w <- rep(2L, length(x)) 159s > b <- gl(2, 3) 159s > s <- 1:4 159s > 159s > ctabs(x) 159s [1] 0 1 1 1 1 1 1 159s > ctabs(x, weights = w) 159s [1] 0 2 2 2 2 2 2 159s > ctabs(x, subset = s) 159s [1] 0 1 1 1 1 0 0 159s > ctabs(x, weights = w, subset = s) 159s [1] 0 2 2 2 2 0 0 159s > ctabs(x, block = b) 159s [,1] [,2] 159s [1,] 0 0 159s [2,] 1 0 159s [3,] 1 0 159s [4,] 1 0 159s [5,] 0 1 159s [6,] 0 1 159s [7,] 0 1 159s > ctabs(x, weights = w, block = b) 159s [,1] [,2] 159s [1,] 0 0 159s [2,] 2 0 159s [3,] 2 0 159s [4,] 2 0 159s [5,] 0 2 159s [6,] 0 2 159s [7,] 0 2 159s > ctabs(x, subset = s, block = b) 159s [,1] [,2] 159s [1,] 0 0 159s [2,] 1 0 159s [3,] 1 0 159s [4,] 1 0 159s [5,] 0 1 159s [6,] 0 0 159s [7,] 0 0 159s > ctabs(x, weights = w, subset = s, block = b) 159s [,1] [,2] 159s [1,] 0 0 159s [2,] 2 0 159s [3,] 2 0 159s [4,] 2 0 159s [5,] 0 2 159s [6,] 0 0 159s [7,] 0 0 159s > 159s > ctabs(x, y) 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 1 0 0 159s [3,] 0 0 1 0 159s [4,] 0 0 0 1 159s [5,] 0 1 0 0 159s [6,] 0 0 1 0 159s [7,] 0 0 0 1 159s > ctabs(x, y, weights = w) 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 2 0 0 159s [3,] 0 0 2 0 159s [4,] 0 0 0 2 159s [5,] 0 2 0 0 159s [6,] 0 0 2 0 159s [7,] 0 0 0 2 159s > ctabs(x, y, subset = s) 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 1 0 0 159s [3,] 0 0 1 0 159s [4,] 0 0 0 1 159s [5,] 0 1 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s > ctabs(x, y, weights = w, subset = s) 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 2 0 0 159s [3,] 0 0 2 0 159s [4,] 0 0 0 2 159s [5,] 0 2 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s > ctabs(x, y, block = b) 159s , , 1 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 1 0 0 159s [3,] 0 0 1 0 159s [4,] 0 0 0 1 159s [5,] 0 0 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s 159s , , 2 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 0 0 0 159s [3,] 0 0 0 0 159s [4,] 0 0 0 0 159s [5,] 0 1 0 0 159s [6,] 0 0 1 0 159s [7,] 0 0 0 1 159s 159s > ctabs(x, y, weights = w, block = b) 159s , , 1 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 2 0 0 159s [3,] 0 0 2 0 159s [4,] 0 0 0 2 159s [5,] 0 0 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s 159s , , 2 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 0 0 0 159s [3,] 0 0 0 0 159s [4,] 0 0 0 0 159s [5,] 0 2 0 0 159s [6,] 0 0 2 0 159s [7,] 0 0 0 2 159s 159s > ctabs(x, y, subset = s, block = b) 159s , , 1 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 1 0 0 159s [3,] 0 0 1 0 159s [4,] 0 0 0 1 159s [5,] 0 0 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s 159s , , 2 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 0 0 0 159s [3,] 0 0 0 0 159s [4,] 0 0 0 0 159s [5,] 0 1 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s 159s > ctabs(x, y, weights = w, subset = s, block = b) 159s , , 1 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 2 0 0 159s [3,] 0 0 2 0 159s [4,] 0 0 0 2 159s [5,] 0 0 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s 159s , , 2 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0 0 0 159s [2,] 0 0 0 0 159s [3,] 0 0 0 0 159s [4,] 0 0 0 0 159s [5,] 0 2 0 0 159s [6,] 0 0 0 0 159s [7,] 0 0 0 0 159s 159s > 159s > w <- round(1:length(x) / length(x), 2) 159s > ctabs(x, weights = w) 159s [1] 0.00 0.17 0.33 0.50 0.67 0.83 1.00 159s > ctabs(x, weights = w, subset = s) 159s [1] 0.00 0.17 0.33 0.50 0.67 0.00 0.00 159s > ctabs(x, weights = w, block = b) 159s [,1] [,2] 159s [1,] 0.00 0.00 159s [2,] 0.17 0.00 159s [3,] 0.33 0.00 159s [4,] 0.50 0.00 159s [5,] 0.00 0.67 159s [6,] 0.00 0.83 159s [7,] 0.00 1.00 159s > ctabs(x, weights = w, subset = s, block = b) 159s [,1] [,2] 159s [1,] 0.00 0.00 159s [2,] 0.17 0.00 159s [3,] 0.33 0.00 159s [4,] 0.50 0.00 159s [5,] 0.00 0.67 159s [6,] 0.00 0.00 159s [7,] 0.00 0.00 159s > 159s > ctabs(x, y, weights = w) 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0.00 0.00 0.0 159s [2,] 0 0.17 0.00 0.0 159s [3,] 0 0.00 0.33 0.0 159s [4,] 0 0.00 0.00 0.5 159s [5,] 0 0.67 0.00 0.0 159s [6,] 0 0.00 0.83 0.0 159s [7,] 0 0.00 0.00 1.0 159s > ctabs(x, y, weights = w, subset = s) 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0.00 0.00 0.0 159s [2,] 0 0.17 0.00 0.0 159s [3,] 0 0.00 0.33 0.0 159s [4,] 0 0.00 0.00 0.5 159s [5,] 0 0.67 0.00 0.0 159s [6,] 0 0.00 0.00 0.0 159s [7,] 0 0.00 0.00 0.0 159s > ctabs(x, y, weights = w, block = b) 159s , , 1 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0.00 0.00 0.0 159s [2,] 0 0.17 0.00 0.0 159s [3,] 0 0.00 0.33 0.0 159s [4,] 0 0.00 0.00 0.5 159s [5,] 0 0.00 0.00 0.0 159s [6,] 0 0.00 0.00 0.0 159s [7,] 0 0.00 0.00 0.0 159s 159s , , 2 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0.00 0.00 0 159s [2,] 0 0.00 0.00 0 159s [3,] 0 0.00 0.00 0 159s [4,] 0 0.00 0.00 0 159s [5,] 0 0.67 0.00 0 159s [6,] 0 0.00 0.83 0 159s [7,] 0 0.00 0.00 1 159s 159s > ctabs(x, y, weights = w, subset = s, block = b) 159s , , 1 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0.00 0.00 0.0 159s [2,] 0 0.17 0.00 0.0 159s [3,] 0 0.00 0.33 0.0 159s [4,] 0 0.00 0.00 0.5 159s [5,] 0 0.00 0.00 0.0 159s [6,] 0 0.00 0.00 0.0 159s [7,] 0 0.00 0.00 0.0 159s 159s , , 2 159s 159s [,1] [,2] [,3] [,4] 159s [1,] 0 0.00 0 0 159s [2,] 0 0.00 0 0 159s [3,] 0 0.00 0 0 159s [4,] 0 0.00 0 0 159s [5,] 0 0.67 0 0 159s [6,] 0 0.00 0 0 159s [7,] 0 0.00 0 0 159s 159s > 159s BEGIN TEST regtest_libcoin.R 160s 160s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 160s Copyright (C) 2024 The R Foundation for Statistical Computing 160s Platform: aarch64-unknown-linux-gnu (64-bit) 160s 160s R is free software and comes with ABSOLUTELY NO WARRANTY. 160s You are welcome to redistribute it under certain conditions. 160s Type 'license()' or 'licence()' for distribution details. 160s 160s R is a collaborative project with many contributors. 160s Type 'contributors()' for more information and 160s 'citation()' on how to cite R or R packages in publications. 160s 160s Type 'demo()' for some demos, 'help()' for on-line help, or 160s 'help.start()' for an HTML browser interface to help. 160s Type 'q()' to quit R. 160s 160s > 160s > library("libcoin") 160s > library("coin") 160s Loading required package: survival 163s > set.seed(29) 163s > 163s > n <- 100 163s > p <- 4 163s > q <- 2 163s > X <- matrix(runif(p * n), nc = p) 163s > Y <- matrix(runif(q * n), nc = q) 163s > w <- as.integer(floor(runif(n, max = 4))) 163s > s <- sort(sample(1:n, floor(n/2), replace = TRUE)) 163s > b <- sample(gl(2, 2, length = n)) 163s > 163s > tol <- if (.Platform$OS.type == "unix") { 163s + sqrt(.Machine$double.eps) 163s + } else { 163s + .Machine$double.eps^(1/5) 163s + } 163s > 163s > cmp <- function(t1, t2) { 163s + if (is.null(t1$Covariance)) { 163s + var1 <- t1$Variance 163s + var2 <- diag(covariance(t2)) 163s + } else { 163s + var1 <- t1$Covariance 163s + var2 <- covariance(t2) 163s + var2 <- var2[!upper.tri(var2)] 163s + } 163s + stopifnot(all.equal( 163s + list(t1$LinearStatistic, 163s + t1$Expectation, 163s + var1), 163s + list(as.vector(statistic(t2, type = "linear")), 163s + as.vector(expectation(t2)), 163s + var2), 163s + check.attributes = FALSE, tolerance = tol 163s + )) 163s + } 163s > 163s > cmp2 <- function(t1, t2) { 163s + nm <- c("LinearStatistic", "Expectation", 163s + if(t1$varonly == 1) "Variance" else "Covariance") 163s + stopifnot(all.equal(t1[nm], t2[nm], tolerance = tol)) 163s + } 163s > 163s > cmp3 <- function(t1, t2, pvalue = FALSE) { 163s + stopifnot(all.equal(statistic(t1), t2$TestStatistic, tolerance = tol)) 163s + if (pvalue) 163s + stopifnot(all.equal(unclass(pvalue(t1)), t2$p.value, check.attributes = FALSE, tolerance = tol)) 163s + } 163s > 163s > cmp4 <- function(t1, t2) 163s + stopifnot(all.equal(t1$TestStatistic, sqrt(t2$TestStatistic), tolerance = tol)) 163s > 163s > 163s > t1 <- LinStatExpCov(X, Y) 163s > t1v <- LinStatExpCov(X, Y, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > cmp3(t2, doTest(t1, teststat = "maximum"), pvalue = TRUE) 163s > t3 <- independence_test(Y ~ X, teststat = "maximum", alternative = "less") 163s > cmp3(t3, doTest(t1, teststat = "maximum", alternative = "less"), pvalue = TRUE) 163s > t3 <- independence_test(Y ~ X, teststat = "maximum", alternative = "greater") 163s > cmp3(t3, doTest(t1, teststat = "maximum", alternative = "greater"), pvalue = TRUE) 163s > t3 <- independence_test(Y ~ X, teststat = "quadratic") 163s > cmp3(t3, doTest(t1, teststat = "quadratic"), pvalue = TRUE) 163s > 163s > t1 <- LinStatExpCov(X, Y, weights = w) 163s > t1v <- LinStatExpCov(X, Y, weights = w, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X, weights = ~ w) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, subset = s) 163s > t1v <- LinStatExpCov(X, Y, subset = s, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, weights = w, subset = s) 163s > t1v <- LinStatExpCov(X, Y, weights = w, subset = s, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X, weights = ~w, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, block = b) 163s > t1v <- LinStatExpCov(X, Y, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X | b) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, weights = w, block = b) 163s > t1v <- LinStatExpCov(X, Y, weights = w, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X | b, weights = ~ w) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, subset = s, block = b) 163s > t1v <- LinStatExpCov(X, Y, subset = s, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X | b, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, weights = w, subset = s, block = b) 163s > t1v <- LinStatExpCov(X, Y, weights = w, subset = s, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y ~ X | b, weights = ~w, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > n <- 100 163s > n1 <- 5 163s > n2 <- 4 163s > p <- 4 163s > q <- 2 163s > X <- rbind(0, matrix(runif(p * n1), nc = p)) 163s > Y <- rbind(0, matrix(runif(q * n2), nc = q)) 163s > ix <- sample(1:n1, n, replace = TRUE) 163s > iy <- sample(1:n2, n, replace = TRUE) 163s > w <- as.integer(floor(runif(n, max = 4))) 163s > s <- sort(sample(1:n, floor(n/2), replace = TRUE)) 163s > b <- sample(gl(2, 2, length = n)) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,]) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,], weights = ~ w) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, subset = s) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, subset = s, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,], subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,], weights = ~w, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, block = b) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,] | b) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w, block = b) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,] | b, weights = ~ w) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, subset = s, block = b) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, subset = s, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,] | b, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s, block = b) 163s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s, block = b, varonly = TRUE) 163s > t2 <- independence_test(Y[iy + 1,] ~ X[ix + 1,]| b, weights = ~w, subset = s) 163s > cmp(t1, t2) 163s > cmp(t1v, t2) 163s > 163s > #### X factor 163s > n <- 10000 163s > p <- 40 163s > q <- 20 163s > X <- diag(p)[fx <- unclass(factor(sample(1:p, n, replace = TRUE))),] 163s > Y <- matrix(runif(q * n), nc = q) 163s > w <- as.integer(floor(runif(n, max = 4))) 163s > s <- sort(sample(1:n, floor(n/2), replace = TRUE)) 163s > b <- sample(gl(2, 2, length = n)) 163s > 163s > t1 <- LinStatExpCov(X, Y) 164s > t1v <- LinStatExpCov(X, Y, varonly = TRUE) 164s > t2 <- independence_test(Y ~ X) 164s > cmp(t1, t2) 164s > cmp(t1v, t2) 164s > t1f <- LinStatExpCov(fx, Y) 165s > t1vf <- LinStatExpCov(fx, Y, varonly = TRUE) 165s > cmp2(t1, t1f) 165s > cmp2(t1v, t1vf) 165s > 165s > t1 <- LinStatExpCov(X, Y, weights = w) 165s > t1v <- LinStatExpCov(X, Y, weights = w, varonly = TRUE) 165s > t2 <- independence_test(Y ~ X, weights = ~ w) 165s > cmp(t1, t2) 165s > cmp(t1v, t2) 165s > t1f <- LinStatExpCov(fx, Y, weights = w) 166s > t1vf <- LinStatExpCov(fx, Y, weights = w, varonly = TRUE) 166s > cmp2(t1, t1f) 166s > cmp2(t1v, t1vf) 166s > 166s > t1 <- LinStatExpCov(X, Y, subset = s) 166s > t1v <- LinStatExpCov(X, Y, subset = s, varonly = TRUE) 166s > t2 <- independence_test(Y ~ X, subset = s) 166s > cmp(t1, t2) 166s > cmp(t1v, t2) 166s > t1f <- LinStatExpCov(fx, Y, subset = s) 166s > t1vf <- LinStatExpCov(fx, Y, subset = s, varonly = TRUE) 166s > cmp2(t1, t1f) 166s > cmp2(t1v, t1vf) 166s > 166s > t1 <- LinStatExpCov(X, Y, weights = w, subset = s) 166s > t1v <- LinStatExpCov(X, Y, weights = w, subset = s, varonly = TRUE) 166s > t2 <- independence_test(Y ~ X, weights = ~w, subset = s) 167s > cmp(t1, t2) 167s > cmp(t1v, t2) 167s > t1f <- LinStatExpCov(fx, Y, weights = w, subset = s) 167s > t1vf <- LinStatExpCov(fx, Y, weights = w, subset = s, varonly = TRUE) 167s > cmp2(t1, t1f) 167s > cmp2(t1v, t1vf) 167s > 167s > t1 <- LinStatExpCov(X, Y, block = b) 167s > t1v <- LinStatExpCov(X, Y, block = b, varonly = TRUE) 167s > t2 <- independence_test(Y ~ X | b) 168s > cmp(t1, t2) 168s > cmp(t1v, t2) 168s > t1f <- LinStatExpCov(fx, Y, block = b) 168s > t1vf <- LinStatExpCov(fx, Y, block = b, varonly = TRUE) 168s > cmp2(t1, t1f) 168s > cmp2(t1v, t1vf) 168s > 168s > 168s > t1 <- LinStatExpCov(X, Y, weights = w, block = b) 168s > t1v <- LinStatExpCov(X, Y, weights = w, block = b, varonly = TRUE) 168s > t2 <- independence_test(Y ~ X | b, weights = ~ w) 168s > cmp(t1, t2) 169s > cmp(t1v, t2) 169s > t1f <- LinStatExpCov(fx, Y, weights = w, block = b) 169s > t1vf <- LinStatExpCov(fx, Y, weights = w, block = b, varonly = TRUE) 169s > cmp2(t1, t1f) 169s > cmp2(t1v, t1vf) 169s > 169s > t1 <- LinStatExpCov(X, Y, subset = s, block = b) 169s > t1v <- LinStatExpCov(X, Y, subset = s, block = b, varonly = TRUE) 169s > t2 <- independence_test(Y ~ X | b, subset = s) 169s > cmp(t1, t2) 169s > cmp(t1v, t2) 169s > t1f <- LinStatExpCov(fx, Y, subset = s, block = b) 169s > t1vf <- LinStatExpCov(fx, Y, subset = s, block = b, varonly = TRUE) 169s > cmp2(t1, t1f) 169s > cmp2(t1v, t1vf) 169s > 169s > t1 <- LinStatExpCov(X, Y, weights = w, subset = s, block = b) 170s > t1v <- LinStatExpCov(X, Y, weights = w, subset = s, block = b, varonly = TRUE) 170s > t2 <- independence_test(Y ~ X | b, weights = ~w, subset = s) 170s > cmp(t1, t2) 170s > cmp(t1v, t2) 170s > t1f <- LinStatExpCov(fx, Y, weights = w, subset = s, block = b) 170s > t1vf <- LinStatExpCov(fx, Y, weights = w, subset = s, block = b, varonly = TRUE) 170s > cmp2(t1, t1f) 170s > cmp2(t1v, t1vf) 170s > 170s > n1 <- 5 170s > n2 <- 7 170s > X <- rbind(0, diag(n1)) 170s > Y <- rbind(0, matrix(runif(q * n2), nc = q)) 170s > ix <- sample(1:n1, n, replace = TRUE) 170s > iy <- sample(1:n2, n, replace = TRUE) 170s > w <- as.integer(floor(runif(n, max = 4))) 170s > s <- sort(sample(1:n, floor(n/2), replace = TRUE)) 170s > b <- sample(gl(2, 2, length = n)) 170s > 170s > YY <- Y[iy + 1,] 170s > XX <- X[ix + 1,] 170s > 170s > t1 <- LinStatExpCov(X, Y, ix, iy) 170s > t1v <- LinStatExpCov(X, Y, ix, iy, varonly = TRUE) 170s > t2 <- independence_test(YY ~ XX) 170s > cmp(t1, t2) 170s > cmp(t1v, t2) 170s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy) 170s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, varonly = TRUE) 170s > cmp2(t1, t1f) 170s > cmp2(t1v, t1vf) 170s > 170s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w) 170s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, varonly = TRUE) 170s > t2 <- independence_test(YY ~ XX, weights = ~ w) 170s > cmp(t1, t2) 170s > cmp(t1v, t2) 170s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w) 170s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, varonly = TRUE) 170s > cmp2(t1, t1f) 170s > cmp2(t1v, t1vf) 170s > 170s > t1 <- LinStatExpCov(X, Y, ix, iy, subset = s) 170s > t1v <- LinStatExpCov(X, Y, ix, iy, subset = s, varonly = TRUE) 170s > t2 <- independence_test(YY ~ XX, subset = s) 170s > cmp(t1, t2) 170s > cmp(t1v, t2) 170s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, subset = s) 170s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, subset = s, varonly = TRUE) 170s > cmp2(t1, t1f) 170s > cmp2(t1v, t1vf) 170s > 170s > 170s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s) 170s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s, varonly = TRUE) 170s > t2 <- independence_test(YY ~ XX, weights = ~w, subset = s) 171s > cmp(t1, t2) 171s > cmp(t1v, t2) 171s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, subset = s) 171s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, subset = s, varonly = TRUE) 171s > cmp2(t1, t1f) 171s > cmp2(t1v, t1vf) 171s > 171s > t1 <- LinStatExpCov(X, Y, ix, iy, block = b) 171s > t1v <- LinStatExpCov(X, Y, ix, iy, block = b, varonly = TRUE) 171s > t2 <- independence_test(YY ~ XX | b) 171s > cmp(t1, t2) 171s > cmp(t1v, t2) 171s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, block = b) 171s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, block = b, varonly = TRUE) 171s > cmp2(t1, t1f) 171s > cmp2(t1v, t1vf) 171s > 171s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w, block = b) 171s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, block = b, varonly = TRUE) 171s > t2 <- independence_test(YY ~ XX | b, weights = ~ w) 171s > cmp(t1, t2) 171s > cmp(t1v, t2) 171s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, block = b) 171s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, block = b, varonly = TRUE) 171s > cmp2(t1, t1f) 171s > cmp2(t1v, t1vf) 171s > 171s > t1 <- LinStatExpCov(X, Y, ix, iy, subset = s, block = b) 171s > t1v <- LinStatExpCov(X, Y, ix, iy, subset = s, block = b, varonly = TRUE) 171s > t2 <- independence_test(YY ~ XX | b, subset = s) 171s > cmp(t1, t2) 171s > cmp(t1v, t2) 171s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, subset = s, block = b) 171s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, subset = s, block = b, varonly = TRUE) 171s > cmp2(t1, t1f) 171s > cmp2(t1v, t1vf) 171s > 171s > t1 <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s, block = b) 171s > t1v <- LinStatExpCov(X, Y, ix, iy, weights = w, subset = s, block = b, varonly = TRUE) 171s > t2 <- independence_test(YY ~ XX| b, weights = ~w, subset = s) 171s > cmp(t1, t2) 171s > cmp(t1v, t2) 171s > t1f <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, subset = s, block = b) 171s > t1vf <- LinStatExpCov(numeric(0), Y, ix, iy, weights = w, subset = s, block = b, varonly = TRUE) 171s > cmp2(t1, t1f) 171s > cmp2(t1v, t1vf) 171s > 171s > ### and now maximally selected statistics 171s > n <- 100 171s > B <- 1000 171s > x <- round(runif(n), 2) 171s > y <- rnorm(n, mean = x < .5, sd = 2.6) 171s > y2 <- runif(n) 171s > blk <- gl(4, n/4) 171s > ux <- sort(unique(x)) 171s > ix <- unclass(cut(x, breaks = c(-Inf, ux[-length(ux)] + diff(ux) / 2, Inf))) 171s > 171s > cmp3 <- function(t1, t2) 171s + stopifnot(all.equal(statistic(t1), t2$TestStatistic, tolerance = tol)) 171s > 171s > cmp4 <- function(t1, t2) 171s + stopifnot(all.equal(t1$TestStatistic, sqrt(t2$TestStatistic), tolerance = tol)) 171s > 171s > (mt <- maxstat_test(y ~ x , distrib = approximate(nresample = 1000))) 171s 171s Approximative Generalized Maximally Selected Statistics 171s 171s data: y by x 171s maxT = 2.1537, p-value = 0.26 171s alternative hypothesis: two.sided 171s sample estimates: 171s "best" cutpoint: <= 0.53 171s 171s > lev <- LinStatExpCov(ix, y, nresample = 1000) 171s > (tst <- doTest(lev, teststat = "maximum")) 171s $TestStatistic 171s [1] 2.153664 171s 171s $p.value 171s [1] 0.245 171s 171s $index 171s [1] 36 171s 171s > cmp3(mt, tst) 171s > ux[tst$index] 171s [1] 0.53 171s > (tst2 <- doTest(lev, teststat = "quadratic")) 171s $TestStatistic 171s [1] 4.63827 171s 171s $p.value 171s [1] 0.245 171s 171s $index 171s [1] 36 171s 171s > cmp4(tst, tst2) 171s > ux[tst2$index] 171s [1] 0.53 171s > lev <- LinStatExpCov(ix, y, nresample = 1000, varonly = TRUE) 171s > (tst <- doTest(lev, teststat = "maximum")) 171s $TestStatistic 171s [1] 2.153664 171s 171s $p.value 171s [1] 0.253 171s 171s $index 171s [1] 36 171s 171s > cmp3(mt, tst) 171s > ux[tst$index] 171s [1] 0.53 171s > (tst2 <- doTest(lev, teststat = "quadratic")) 171s $TestStatistic 171s [1] 4.63827 171s 171s $p.value 171s [1] 0.253 171s 171s $index 171s [1] 36 171s 171s > cmp4(tst, tst2) 171s > ux[tst2$index] 171s [1] 0.53 171s > 171s > (mt <- maxstat_test(y ~ x | blk, distrib = approximate(nresample = 1000))) 171s 171s Approximative Generalized Maximally Selected Statistics 171s 171s data: y by x 171s stratified by blk 171s maxT = 2.2764, p-value = 0.221 171s alternative hypothesis: two.sided 171s sample estimates: 171s "best" cutpoint: <= 0.53 171s 171s > lev <- LinStatExpCov(ix, y, block = blk, nresample = 1000) 171s > (tst <- doTest(lev, teststat = "maximum")) 171s $TestStatistic 171s [1] 2.276446 171s 171s $p.value 171s [1] 0.192 171s 171s $index 171s [1] 36 171s 171s > cmp3(mt, tst) 171s > ux[tst$index] 171s [1] 0.53 171s > (tst2 <- doTest(lev, teststat = "quadratic")) 171s $TestStatistic 171s [1] 5.182204 171s 171s $p.value 171s [1] 0.192 171s 171s $index 171s [1] 36 171s 171s > cmp4(tst, tst2) 171s > ux[tst$index] 171s [1] 0.53 171s > lev <- LinStatExpCov(ix, y, block = blk, nresample = 1000, varonly = TRUE) 171s > try(tst <- doTest(lev, teststat = "maximum")) 171s Error in doTest(lev, teststat = "maximum") : 171s need covariance for maximally statistics with blocks 171s > 171s > (mt <- maxstat_test(y + y2 ~ x , distrib = approximate(nresample = 1000))) 171s 171s Approximative Generalized Maximally Selected Statistics 171s 171s data: y, y2 by x 171s maxT = 2.1537, p-value = 0.445 171s alternative hypothesis: two.sided 171s sample estimates: 171s "best" cutpoint: <= 0.53 171s 171s > lev <- LinStatExpCov(ix, cbind(y, y2), nresample = 1000) 171s > (tst <- doTest(lev, teststat = "maximum")) 171s $TestStatistic 171s [1] 2.153664 171s 171s $p.value 171s [1] 0.471 171s 171s $index 171s [1] 36 171s 171s > cmp3(mt, tst) 171s > ux[tst$index] 171s [1] 0.53 171s > (tst <- doTest(lev, teststat = "quadratic")) 171s $TestStatistic 171s [1] 5.720153 171s 171s $p.value 171s [1] 0.412 171s 171s $index 171s [1] 40 171s 171s > ux[tst$index] 171s [1] 0.57 171s > lev <- LinStatExpCov(ix, cbind(y, y2), nresample = 1000, varonly = TRUE) 171s > (tst <- doTest(lev, teststat = "maximum")) 171s $TestStatistic 171s [1] 2.153664 171s 171s $p.value 171s [1] 0.476 171s 171s $index 171s [1] 36 171s 171s > cmp3(mt, tst) 171s > ux[tst$index] 171s [1] 0.53 171s > (tst <- doTest(lev, teststat = "quadratic")) 171s $TestStatistic 171s [1] 5.720153 171s 171s $p.value 171s [1] 0.429 171s 171s $index 171s [1] 40 171s 171s > ux[tst$index] 171s [1] 0.57 171s > 171s > (mt <- maxstat_test(y + y2 ~ x | blk, distrib = approximate(nresample = 1000))) 172s 172s Approximative Generalized Maximally Selected Statistics 172s 172s data: y, y2 by x 172s stratified by blk 172s maxT = 2.2764, p-value = 0.38 172s alternative hypothesis: two.sided 172s sample estimates: 172s "best" cutpoint: <= 0.53 172s 172s > lev <- LinStatExpCov(ix, cbind(y, y2), block = blk, nresample = 1000) 172s > (tst <- doTest(lev, teststat = "maximum")) 172s $TestStatistic 172s [1] 2.276446 172s 172s $p.value 172s [1] 0.394 172s 172s $index 172s [1] 36 172s 172s > cmp3(mt, tst) 172s > ux[tst$index] 172s [1] 0.53 172s > (tst <- doTest(lev, teststat = "quadratic")) 172s $TestStatistic 172s [1] 5.406605 172s 172s $p.value 172s [1] 0.504 172s 172s $index 172s [1] 40 172s 172s > ux[tst$index] 172s [1] 0.57 172s > lev <- LinStatExpCov(ix, cbind(y, y2), block = blk, nresample = 1000, varonly = TRUE) 172s > try(tst <- doTest(lev, teststat = "maximum")) 172s Error in doTest(lev, teststat = "maximum") : 172s need covariance for maximally statistics with blocks 172s > 172s > x <- sample(gl(5, n)) 172s > y <- rnorm(length(x), mean = x %in% levels(x)[c(1, 3, 5)], sd = 4.5) 172s > y2 <- runif(length(x)) 172s > ix <- unclass(x) 172s > blk <- gl(5, n) 172s > 172s > (mt <- maxstat_test(y ~ x , distrib = approximate(nresample = 1000))) 172s 172s Approximative Generalized Maximally Selected Statistics 172s 172s data: y by x (1, 2, 3, 4, 5) 172s maxT = 1.7088, p-value = 0.443 172s alternative hypothesis: two.sided 172s sample estimates: 172s "best" cutpoint: {1, 3} vs. {2, 4, 5} 172s 172s > lev <- LinStatExpCov(ix, y, nresample = 1000) 172s > (tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s $TestStatistic 172s [1] 1.708775 172s 172s $p.value 172s [1] 0.485 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > cmp3(mt, tst) 172s > (tst2 <- doTest(lev, teststat = "quadratic", ordered = FALSE)) 172s $TestStatistic 172s [1] 2.919912 172s 172s $p.value 172s [1] 0.485 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > cmp4(tst, tst2) 172s > lev <- LinStatExpCov(ix, y, nresample = 1000, varonly = TRUE) 172s > (tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s $TestStatistic 172s [1] 1.708775 172s 172s $p.value 172s [1] 0.476 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > cmp3(mt, tst) 172s > (tst2 <- doTest(lev, teststat = "quadratic", ordered = FALSE)) 172s $TestStatistic 172s [1] 2.919912 172s 172s $p.value 172s [1] 0.476 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > cmp4(tst, tst2) 172s > 172s > (mt <- maxstat_test(y ~ x | blk, distrib = approximate(nresample = 1000))) 172s 172s Approximative Generalized Maximally Selected Statistics 172s 172s data: y by x (1, 2, 3, 4, 5) 172s stratified by blk 172s maxT = 1.6489, p-value = 0.543 172s alternative hypothesis: two.sided 172s sample estimates: 172s "best" cutpoint: {1, 3} vs. {2, 4, 5} 172s 172s > lev <- LinStatExpCov(ix, y, block = blk, nresample = 1000) 172s > (tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s $TestStatistic 172s [1] 1.648947 172s 172s $p.value 172s [1] 0.464 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > cmp3(mt, tst) 172s > (tst2 <- doTest(lev, teststat = "quadratic", ordered = FALSE)) 172s $TestStatistic 172s [1] 2.719028 172s 172s $p.value 172s [1] 0.464 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > cmp4(tst, tst2) 172s > lev <- LinStatExpCov(ix, y, block = blk, nresample = 1000, varonly = TRUE) 172s > try(tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s > 172s > (mt <- maxstat_test(y + y2 ~ x , distrib = approximate(nresample = 1000))) 172s Error in doTest(lev, teststat = "maximum", ordered = FALSE) : 172s need covariance for maximally statistics with blocks 172s 172s Approximative Generalized Maximally Selected Statistics 172s 172s data: y, y2 by x (1, 2, 3, 4, 5) 172s maxT = 2.358, p-value = 0.285 172s alternative hypothesis: two.sided 172s sample estimates: 172s "best" cutpoint: {1, 3, 5} vs. {2, 4} 172s 172s > lev <- LinStatExpCov(ix, cbind(y, y2), nresample = 1000) 172s > (tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s $TestStatistic 172s [1] 2.357973 172s 172s $p.value 172s [1] 0.301 172s 172s $index 172s [1] 0 1 0 1 0 172s 172s > cmp3(mt, tst) 172s > (tst <- doTest(lev, teststat = "quadratic", ordered = FALSE)) 172s $TestStatistic 172s [1] 8.373114 172s 172s $p.value 172s [1] 0.143 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > lev <- LinStatExpCov(ix, cbind(y, y2), nresample = 1000, varonly = TRUE) 172s > (tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s $TestStatistic 172s [1] 2.357973 172s 172s $p.value 172s [1] 0.275 172s 172s $index 172s [1] 0 1 0 1 0 172s 172s > cmp3(mt, tst) 172s > (tst <- doTest(lev, teststat = "quadratic", ordered = FALSE)) 172s $TestStatistic 172s [1] 8.373114 172s 172s $p.value 172s [1] 0.134 172s 172s $index 172s [1] 0 1 0 1 1 172s 172s > 172s > (mt <- maxstat_test(y + y2 ~ x | blk, distrib = approximate(nresample = 1000))) 172s 172s Approximative Generalized Maximally Selected Statistics 172s 172s data: y, y2 by x (1, 2, 3, 4, 5) 172s stratified by blk 172s maxT = 2.4473, p-value = 0.218 172s alternative hypothesis: two.sided 172s sample estimates: 172s "best" cutpoint: {1, 3, 5} vs. {2, 4} 172s 172s > lev <- LinStatExpCov(ix, cbind(y, y2), block = blk, nresample = 50) 172s > (tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s $TestStatistic 172s [1] 2.447272 172s 172s $p.value 172s [1] 0.2 172s 172s $index 172s [1] 0 1 0 1 0 172s 172s > cmp3(mt, tst) 172s > (tst2 <- doTest(lev, teststat = "quadratic", ordered = FALSE)) 172s $TestStatistic 172s [1] 8.115438 172s 172s $p.value 172s [1] 0.12 172s 172s $index 172s [1] 0 1 0 1 0 172s 172s > 172s > xx <- factor(x %in% levels(x)[tst2$index == 1]) 172s > (it <- independence_test(y + y2 ~ xx | blk, teststat = "quadratic")) 172s 172s Asymptotic General Independence Test 172s 172s data: y, y2 by xx (FALSE, TRUE) 172s stratified by blk 172s chi-squared = 8.1154, df = 2, p-value = 0.01729 172s 172s > cmp3(it, tst2) 172s > 172s > lev <- LinStatExpCov(ix, cbind(y, y2), block = blk, nresample = 1000, varonly = TRUE) 172s > try(tst <- doTest(lev, teststat = "maximum", ordered = FALSE)) 172s Error in doTest(lev, teststat = "maximum", ordered = FALSE) : 172s need covariance for maximally statistics with blocks 172s > 173s autopkgtest [19:04:58]: test run-unit-test: -----------------------] 173s autopkgtest [19:04:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 173s run-unit-test PASS 174s autopkgtest [19:04:59]: test pkg-r-autopkgtest: preparing testbed 184s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 187s The following additional packages will be installed: 187s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 187s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 187s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 187s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 187s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 187s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 187s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 187s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 187s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 187s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 187s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 187s Suggested packages: 187s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 187s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 187s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 187s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 187s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 187s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 187s texlive-latex-recommended texlive-latex-extra texinfo 187s Recommended packages: 187s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 187s The following NEW packages will be installed: 187s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 187s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 187s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 187s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 187s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 187s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 187s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 187s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 187s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 187s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 187s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 187s pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 187s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. 187s Need to get 92.8 MB/92.8 MB of archives. 187s After this operation, 343 MB of additional disk space will be used. 187s Get:1 /tmp/autopkgtest.MGTMW1/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 187s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 187s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 188s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 188s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 188s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 188s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 188s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 189s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 189s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 189s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 190s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 190s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 190s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 190s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 190s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 190s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 190s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 191s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 191s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 191s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 191s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 191s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 191s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 192s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 192s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 192s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 192s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 192s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 192s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 192s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 192s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 192s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 192s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 192s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 192s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 192s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 192s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 192s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 192s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 193s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 193s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 193s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 193s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 193s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 193s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 193s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 193s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 193s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 193s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 193s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 193s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 193s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 193s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 193s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 193s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 193s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 193s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 193s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 193s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 193s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 193s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 194s Fetched 92.8 MB in 6s (15.2 MB/s) 194s Selecting previously unselected package libc-dev-bin. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78957 files and directories currently installed.) 194s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 194s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 194s Selecting previously unselected package linux-libc-dev:arm64. 194s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 194s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 195s Selecting previously unselected package libcrypt-dev:arm64. 195s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 195s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 195s Selecting previously unselected package libtirpc-dev:arm64. 195s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 195s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 195s Selecting previously unselected package libnsl-dev:arm64. 195s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ... 195s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 195s Selecting previously unselected package rpcsvc-proto. 195s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 195s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 195s Selecting previously unselected package libc6-dev:arm64. 195s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ... 195s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 195s Selecting previously unselected package libisl23:arm64. 195s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ... 195s Unpacking libisl23:arm64 (0.26-3) ... 195s Selecting previously unselected package libmpc3:arm64. 195s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 195s Unpacking libmpc3:arm64 (1.3.1-1) ... 195s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 195s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 195s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package cpp-13. 196s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package cpp-aarch64-linux-gnu. 196s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 196s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package cpp. 196s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 196s Unpacking cpp (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package libcc1-0:arm64. 196s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libitm1:arm64. 196s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libatomic1:arm64. 196s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libasan8:arm64. 196s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package liblsan0:arm64. 197s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libtsan2:arm64. 197s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libubsan1:arm64. 197s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libhwasan0:arm64. 197s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libgcc-13-dev:arm64. 197s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 197s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-13. 198s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-aarch64-linux-gnu. 198s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package gcc. 198s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking gcc (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package libstdc++-13-dev:arm64. 199s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-13-aarch64-linux-gnu. 199s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package g++-13. 200s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking g++-13 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package g++-aarch64-linux-gnu. 200s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package g++. 200s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking g++ (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package build-essential. 200s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 200s Unpacking build-essential (12.10ubuntu1) ... 200s Selecting previously unselected package dctrl-tools. 200s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 200s Unpacking dctrl-tools (2.24-3build2) ... 200s Selecting previously unselected package libgfortran-13-dev:arm64. 200s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 200s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 201s Selecting previously unselected package gfortran-13. 201s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 201s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 201s Selecting previously unselected package gfortran-aarch64-linux-gnu. 201s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 201s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 201s Selecting previously unselected package gfortran. 201s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 201s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 201s Selecting previously unselected package icu-devtools. 201s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 201s Unpacking icu-devtools (74.2-1ubuntu1) ... 201s Selecting previously unselected package libblas-dev:arm64. 201s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 201s Unpacking libblas-dev:arm64 (3.12.0-3) ... 201s Selecting previously unselected package libbz2-dev:arm64. 201s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 201s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 201s Selecting previously unselected package libicu-dev:arm64. 201s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 201s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 202s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 202s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 202s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 202s Selecting previously unselected package libjpeg8-dev:arm64. 202s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 202s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 202s Selecting previously unselected package libjpeg-dev:arm64. 202s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 202s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 202s Selecting previously unselected package liblapack-dev:arm64. 202s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 202s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 203s Selecting previously unselected package libncurses-dev:arm64. 203s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 203s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 203s Selecting previously unselected package libpcre2-16-0:arm64. 203s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 203s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 203s Selecting previously unselected package libpcre2-32-0:arm64. 203s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 203s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 203s Selecting previously unselected package libpcre2-posix3:arm64. 203s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 203s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 203s Selecting previously unselected package libpcre2-dev:arm64. 203s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 203s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 203s Selecting previously unselected package libpkgconf3:arm64. 203s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ... 203s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 203s Selecting previously unselected package zlib1g-dev:arm64. 203s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 203s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 203s Selecting previously unselected package libpng-dev:arm64. 203s Preparing to unpack .../53-libpng-dev_1.6.43-3_arm64.deb ... 203s Unpacking libpng-dev:arm64 (1.6.43-3) ... 203s 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libubsan1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 204s Setting up libnsl-dev:arm64 (1.3.0-3) ... 204s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 204s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libisl23:arm64 (0.26-3) ... 204s Setting up libc-dev-bin (2.39-0ubuntu2) ... 204s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 204s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libblas-dev:arm64 (3.12.0-3) ... 204s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 204s Setting up dctrl-tools (2.24-3build2) ... 204s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 204s Setting up pkgconf:arm64 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of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 204s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 204s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 204s Setting up g++ (4:13.2.0-7ubuntu1) ... 204s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 204s Setting up build-essential (12.10ubuntu1) ... 204s Setting up r-base-dev (4.3.3-2build1) ... 204s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 204s Setting up autopkgtest-satdep (0) ... 204s Processing triggers for man-db (2.12.0-3) ... 205s Processing triggers for install-info (7.1-3) ... 206s Processing triggers for libc-bin (2.39-0ubuntu2) ... 211s (Reading database ... 82516 files and directories currently installed.) 211s Removing autopkgtest-satdep (0) ... 211s autopkgtest [19:05:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 211s autopkgtest [19:05:36]: test pkg-r-autopkgtest: [----------------------- 212s Test: Try to load the R library libcoin 212s 212s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 212s Copyright (C) 2024 The R Foundation for Statistical Computing 212s Platform: aarch64-unknown-linux-gnu (64-bit) 212s 212s R is free software and comes with ABSOLUTELY NO WARRANTY. 212s You are welcome to redistribute it under certain conditions. 212s Type 'license()' or 'licence()' for distribution details. 212s 212s R is a collaborative project with many contributors. 212s Type 'contributors()' for more information and 212s 'citation()' on how to cite R or R packages in publications. 212s 212s Type 'demo()' for some demos, 'help()' for on-line help, or 212s 'help.start()' for an HTML browser interface to help. 212s Type 'q()' to quit R. 212s 212s > library('libcoin') 212s > 212s > 212s Other tests are currently unsupported! 212s They will be progressively added. 213s autopkgtest [19:05:38]: test pkg-r-autopkgtest: -----------------------] 213s autopkgtest [19:05:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 213s pkg-r-autopkgtest PASS 214s autopkgtest [19:05:39]: @@@@@@@@@@@@@@@@@@@@ summary 214s run-unit-test PASS 214s pkg-r-autopkgtest PASS 225s Creating nova instance adt-noble-arm64-r-cran-libcoin-20240316-190205-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...