0s autopkgtest [18:55:18]: starting date and time: 2024-03-16 18:55:18+0000 0s autopkgtest [18:55:18]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:55:18]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.07msq0og/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-kmi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-2.secgroup --name adt-noble-arm64-r-cran-kmi-20240316-185518-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [18:56:23]: testbed dpkg architecture: arm64 65s autopkgtest [18:56:23]: testbed apt version: 2.7.12 65s autopkgtest [18:56:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 66s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 66s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 66s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 66s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 66s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 66s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 66s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 66s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 66s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 66s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 66s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 66s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 68s Fetched 9084 kB in 2s (4959 kB/s) 68s Reading package lists... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Calculating upgrade... 74s The following packages will be REMOVED: 74s libglib2.0-0 libssl3 74s The following NEW packages will be installed: 74s libglib2.0-0t64 libssl3t64 xdg-user-dirs 74s The following packages have been kept back: 74s curl 74s The following packages will be upgraded: 74s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 74s ubuntu-minimal ubuntu-standard 74s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 74s Need to get 4613 kB of archives. 74s After this operation, 211 kB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 74s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 74s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 74s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 74s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 74s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 74s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 74s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 74s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 75s Fetched 4613 kB in 1s (6461 kB/s) 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 75s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 75s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 75s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 75s udisks2 depends on libglib2.0-0 (>= 2.77.0). 75s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 75s python3-gi depends on libglib2.0-0 (>= 2.77.0). 75s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 75s netplan.io depends on libglib2.0-0 (>= 2.70.0). 75s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 75s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 75s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 75s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 75s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 75s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 75s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 75s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 75s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 75s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 75s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 75s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 75s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 75s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 75s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 75s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 75s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 75s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 75s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 75s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 75s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 75s fwupd depends on libglib2.0-0 (>= 2.79.0). 75s bolt depends on libglib2.0-0 (>= 2.56.0). 75s 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 75s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 75s Selecting previously unselected package libglib2.0-0t64:arm64. 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 75s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 75s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 75s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 75s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 75s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 75s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 76s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 76s wget depends on libssl3 (>= 3.0.0). 76s u-boot-tools depends on libssl3 (>= 3.0.0). 76s tnftp depends on libssl3 (>= 3.0.0). 76s tcpdump depends on libssl3 (>= 3.0.0). 76s systemd-resolved depends on libssl3 (>= 3.0.0). 76s systemd depends on libssl3 (>= 3.0.0). 76s sudo depends on libssl3 (>= 3.0.0). 76s sbsigntool depends on libssl3 (>= 3.0.0). 76s rsync depends on libssl3 (>= 3.0.0). 76s python3-cryptography depends on libssl3 (>= 3.0.0). 76s openssh-server depends on libssl3 (>= 3.0.10). 76s openssh-client depends on libssl3 (>= 3.0.10). 76s mtd-utils depends on libssl3 (>= 3.0.0). 76s mokutil depends on libssl3 (>= 3.0.0). 76s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 76s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 76s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 76s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 76s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 76s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 76s libnvme1 depends on libssl3 (>= 3.0.0). 76s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 76s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 76s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 76s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 76s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 76s kmod depends on libssl3 (>= 3.0.0). 76s dhcpcd-base depends on libssl3 (>= 3.0.0). 76s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 76s 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 76s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 76s Selecting previously unselected package libssl3t64:arm64. 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 76s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 76s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 76s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 76s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 76s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 76s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 76s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 76s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 76s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 76s Unpacking ubuntu-minimal (1.536) over (1.535) ... 76s Selecting previously unselected package xdg-user-dirs. 76s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 76s Unpacking xdg-user-dirs (0.18-1) ... 76s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 76s Unpacking ubuntu-standard (1.536) over (1.535) ... 76s Setting up ubuntu-minimal (1.536) ... 76s Setting up xdg-user-dirs (0.18-1) ... 76s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 76s Setting up libtirpc-common (1.3.4+ds-1.1) ... 76s Setting up ubuntu-standard (1.536) ... 76s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 76s No schema files found: doing nothing. 76s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 76s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 76s Setting up openssl (3.0.13-0ubuntu1) ... 76s Setting up readline-common (8.2-3.1) ... 76s Processing triggers for man-db (2.12.0-3) ... 77s Processing triggers for install-info (7.1-3) ... 77s Processing triggers for libc-bin (2.39-0ubuntu2) ... 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 79s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 79s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 79s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 79s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 80s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Calculating upgrade... 81s The following packages have been kept back: 81s curl 81s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 85s autopkgtest [18:56:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 86s autopkgtest [18:56:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-kmi 87s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-kmi 0.5.5-2build1 (dsc) [2047 B] 87s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-kmi 0.5.5-2build1 (tar) [35.7 kB] 87s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-kmi 0.5.5-2build1 (diff) [2556 B] 88s gpgv: Signature made Sat May 30 19:25:09 2020 UTC 88s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./r-cran-kmi_0.5.5-2build1.dsc: no acceptable signature found 88s autopkgtest [18:56:46]: testing package r-cran-kmi version 0.5.5-2build1 88s autopkgtest [18:56:46]: build not needed 89s autopkgtest [18:56:47]: test run-unit-test: preparing testbed 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 92s The following additional packages will be installed: 92s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 92s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 92s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 92s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 92s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 92s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 92s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 92s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-dbi 92s r-cran-kmi r-cran-lattice r-cran-matrix r-cran-mitools r-cran-survival unzip 92s x11-common xdg-utils zip 92s Suggested packages: 92s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 92s r-cran-rmysql r-cran-rodbc r-cran-foreign 92s Recommended packages: 92s r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl 92s libx11-protocol-perl x11-utils x11-xserver-utils 92s The following packages will be REMOVED: 92s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 92s The following NEW packages will be installed: 92s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 92s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 92s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 92s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 92s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 92s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 92s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 92s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-dbi 92s r-cran-kmi r-cran-lattice r-cran-matrix r-cran-mitools r-cran-survival unzip 92s x11-common xdg-utils zip 92s The following packages will be upgraded: 92s curl 92s 1 upgraded, 56 newly installed, 5 to remove and 0 not upgraded. 92s Need to get 50.1 MB/50.1 MB of archives. 92s After this operation, 94.0 MB of additional disk space will be used. 92s Get:1 /tmp/autopkgtest.JJ9rQG/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 92s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 92s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 93s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 93s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 93s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 93s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 93s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 93s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 93s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 93s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 93s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 93s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 93s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 93s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 93s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 93s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 93s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 93s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 93s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 93s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 93s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 93s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 93s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 93s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 93s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 93s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 93s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 93s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 93s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 93s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 93s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 93s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 93s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 93s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 93s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 93s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 93s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 93s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 93s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 93s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 93s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 93s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 93s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 93s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 93s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 93s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 93s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 93s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 93s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 93s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 94s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 94s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mitools all 2.4-2build1 [265 kB] 94s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 94s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 94s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 94s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kmi all 0.5.5-2build1 [78.3 kB] 95s Preconfiguring packages ... 95s Fetched 50.1 MB in 2s (23.3 MB/s) 95s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 95s wget depends on libpsl5 (>= 0.16.0). 95s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 95s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 95s Removing libpsl5:arm64 (0.21.2-1build1) ... 95s Selecting previously unselected package libpsl5t64:arm64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 95s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 95s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 95s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 95s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 95s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 95s Selecting previously unselected package libcurl4t64:arm64. 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 95s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 95s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 95s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 95s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 95s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 95s 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 95s Removing libpng16-16:arm64 (1.6.43-1) ... 96s Selecting previously unselected package libpng16-16t64:arm64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 96s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 96s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 96s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 96s parted depends on libreadline8 (>= 6.0). 96s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 96s gpgsm depends on libreadline8 (>= 6.0). 96s gpgconf depends on libreadline8 (>= 6.0). 96s gpg depends on libreadline8 (>= 6.0). 96s gawk depends on libreadline8 (>= 6.0). 96s fdisk depends on libreadline8 (>= 6.0). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 96s Removing libreadline8:arm64 (8.2-3) ... 96s Selecting previously unselected package libreadline8t64:arm64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 96s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 96s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 96s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 96s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 96s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 96s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 96s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 96s lsof depends on libtirpc3 (>= 1.0.2). 96s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 96s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 96s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 96s iproute2 depends on libtirpc3 (>= 1.0.2). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 96s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 96s Selecting previously unselected package libtirpc3t64:arm64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 96s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 96s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 96s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 96s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 96s Selecting previously unselected package fonts-dejavu-mono. 96s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 96s Unpacking fonts-dejavu-mono (2.37-8) ... 96s Selecting previously unselected package fonts-dejavu-core. 96s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 96s Unpacking fonts-dejavu-core (2.37-8) ... 96s Selecting previously unselected package fontconfig-config. 96s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 96s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 97s Selecting previously unselected package libfontconfig1:arm64. 97s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 97s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 97s Selecting previously unselected package fontconfig. 97s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 97s Unpacking fontconfig (2.15.0-1ubuntu1) ... 97s Selecting previously unselected package libblas3:arm64. 97s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 97s Unpacking libblas3:arm64 (3.12.0-3) ... 97s Selecting previously unselected package libpixman-1-0:arm64. 97s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 97s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 97s Selecting previously unselected package libxcb-render0:arm64. 97s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 97s Unpacking libxcb-render0:arm64 (1.15-1) ... 97s Selecting previously unselected package libxcb-shm0:arm64. 97s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 97s Unpacking libxcb-shm0:arm64 (1.15-1) ... 97s Selecting previously unselected package libxrender1:arm64. 97s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 97s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 97s Selecting previously unselected package libcairo2:arm64. 97s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 97s Unpacking libcairo2:arm64 (1.18.0-1) ... 97s Selecting previously unselected package libdatrie1:arm64. 97s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 97s Unpacking libdatrie1:arm64 (0.2.13-3) ... 97s Selecting previously unselected package libdeflate0:arm64. 97s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 97s Unpacking libdeflate0:arm64 (1.19-1) ... 97s Selecting previously unselected package libgfortran5:arm64. 97s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 97s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 97s Selecting previously unselected package libgomp1:arm64. 97s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 97s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 97s Selecting previously unselected package libgraphite2-3:arm64. 97s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 97s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 97s Selecting previously unselected package libharfbuzz0b:arm64. 97s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_arm64.deb ... 97s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 97s Selecting previously unselected package x11-common. 97s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu2_all.deb ... 97s Unpacking x11-common (1:7.7+23ubuntu2) ... 97s Selecting previously unselected package libice6:arm64. 97s Preparing to unpack .../19-libice6_2%3a1.0.10-1build2_arm64.deb ... 97s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 97s Selecting previously unselected package libjpeg-turbo8:arm64. 97s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 97s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 97s Selecting previously unselected package libjpeg8:arm64. 97s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_arm64.deb ... 97s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 97s Selecting previously unselected package liblapack3:arm64. 97s Preparing to unpack .../22-liblapack3_3.12.0-3_arm64.deb ... 97s Unpacking liblapack3:arm64 (3.12.0-3) ... 97s Selecting previously unselected package liblerc4:arm64. 97s Preparing to unpack .../23-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 97s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 97s Selecting previously unselected package libthai-data. 97s Preparing to unpack .../24-libthai-data_0.1.29-2_all.deb ... 97s Unpacking libthai-data (0.1.29-2) ... 97s Selecting previously unselected package libthai0:arm64. 97s Preparing to unpack .../25-libthai0_0.1.29-2_arm64.deb ... 97s Unpacking libthai0:arm64 (0.1.29-2) ... 97s Selecting previously unselected package libpango-1.0-0:arm64. 97s Preparing to unpack .../26-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 97s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 98s Selecting previously unselected package libpangoft2-1.0-0:arm64. 98s Preparing to unpack .../27-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 98s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 98s Selecting previously unselected package libpangocairo-1.0-0:arm64. 98s Preparing to unpack .../28-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 98s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 98s Selecting previously unselected package libpaper1:arm64. 98s Preparing to unpack .../29-libpaper1_1.1.29_arm64.deb ... 98s Unpacking libpaper1:arm64 (1.1.29) ... 98s Selecting previously unselected package libpaper-utils. 98s Preparing to unpack .../30-libpaper-utils_1.1.29_arm64.deb ... 98s Unpacking libpaper-utils (1.1.29) ... 98s Selecting previously unselected package libsharpyuv0:arm64. 98s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_arm64.deb ... 98s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 98s Selecting previously unselected package libsm6:arm64. 98s Preparing to unpack .../32-libsm6_2%3a1.2.3-1build2_arm64.deb ... 98s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 98s Selecting previously unselected package libtcl8.6:arm64. 98s Preparing to unpack .../33-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 98s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 98s Selecting previously unselected package libjbig0:arm64. 98s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 98s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 98s Selecting previously unselected package libwebp7:arm64. 98s Preparing to unpack .../35-libwebp7_1.3.2-0.4_arm64.deb ... 98s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 98s Selecting previously unselected package libtiff6:arm64. 98s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 98s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 98s Selecting previously unselected package libxft2:arm64. 98s Preparing to unpack .../37-libxft2_2.3.6-1_arm64.deb ... 98s Unpacking libxft2:arm64 (2.3.6-1) ... 98s Selecting previously unselected package libxss1:arm64. 98s Preparing to unpack .../38-libxss1_1%3a1.2.3-1build2_arm64.deb ... 98s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 98s Selecting previously unselected package libtk8.6:arm64. 98s Preparing to unpack .../39-libtk8.6_8.6.13-2_arm64.deb ... 98s Unpacking libtk8.6:arm64 (8.6.13-2) ... 98s Selecting previously unselected package libxt6t64:arm64. 98s Preparing to unpack .../40-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 98s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 98s Selecting previously unselected package zip. 98s Preparing to unpack .../41-zip_3.0-13_arm64.deb ... 98s Unpacking zip (3.0-13) ... 98s Selecting previously unselected package unzip. 98s Preparing to unpack .../42-unzip_6.0-28ubuntu3_arm64.deb ... 98s Unpacking unzip (6.0-28ubuntu3) ... 98s Selecting previously unselected package xdg-utils. 98s Preparing to unpack .../43-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 98s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 98s Selecting previously unselected package r-base-core. 98s Preparing to unpack .../44-r-base-core_4.3.3-2build1_arm64.deb ... 98s Unpacking r-base-core (4.3.3-2build1) ... 99s Selecting previously unselected package r-cran-dbi. 99s Preparing to unpack .../45-r-cran-dbi_1.2.2-1_all.deb ... 99s Unpacking 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R Foundation for Statistical Computing 110s Platform: aarch64-unknown-linux-gnu (64-bit) 110s 110s R is free software and comes with ABSOLUTELY NO WARRANTY. 110s You are welcome to redistribute it under certain conditions. 110s Type 'license()' or 'licence()' for distribution details. 110s 110s R is a collaborative project with many contributors. 110s Type 'contributors()' for more information and 110s 'citation()' on how to cite R or R packages in publications. 110s 110s Type 'demo()' for some demos, 'help()' for on-line help, or 110s 'help.start()' for an HTML browser interface to help. 110s Type 'q()' to quit R. 110s 110s > require(survival) 110s Loading required package: survival 111s > require(kmi) 111s Loading required package: kmi 111s > 111s > ### test 1 111s > 111s > id <- 1:10 111s > time <- 1:10 111s > ev <- c(0, 0, 0, rep(1, 3), rep(2, 4)) 111s > data <- data.frame(id, time, ev) 111s > 111s > aa <- kmi(Surv(time, ev != 0) ~ 1, data, etype = ev) 111s > 111s > bb <- aa$imputed.data 111s > test1 <- lapply(bb, function(x) { 111s + x[aa$original.data$id %in% 7:10, ] 111s + }) 111s > test1 <- do.call(rbind, test1) 111s > 111s > all(test1[, 1] == 11) 111s [1] TRUE 111s > all(test1[, 2] == 0) 111s [1] TRUE 111s > 111s > aa <- kmi(Surv(time, ev != 0) ~ 1, data, etype = ev, failcode = 2) 111s > 111s > bb <- aa$imputed.data 111s > test1 <- lapply(bb, function(x) { 111s + x[aa$original.data$id %in% 4:6, ] 111s + }) 111s > test1 <- do.call(rbind, test1) 111s > 111s > all(test1[, 1] == 11) 111s [1] TRUE 111s > all(test1[, 2] == 0) 111s [1] TRUE 111s > 111s > aa <- kmi(Surv(time, ev != 0) ~ 1, data, etype = ev, epsilon = 2) 111s > 111s > bb <- aa$imputed.data 111s > test1 <- lapply(bb, function(x) { 111s + x[aa$original.data$id %in% 7:10, ] 111s + }) 111s > test1 <- do.call(rbind, test1) 111s > 111s > all(test1[, 1] == 12) 111s [1] TRUE 111s > all(test1[, 2] == 0) 111s [1] TRUE 111s > 111s > aa <- kmi(Surv(time, ev != 0) ~ 1, data, etype = ev, nimp = 13) 111s > length(aa$imputed.data) == 13 111s [1] TRUE 111s > 111s > 111s > ### test 2 111s > 111s > set.seed(198740) 111s > time <- rexp(100) 111s > ev <- sample(c(0, 1, 2), 100, replace = TRUE) 111s > cov <- rbinom(100, 1, 0.5) 111s > dd <- data.frame(time, ev, cov) 111s > 111s > ## add a test when etype is a factor 111s > dd$status <- factor(ifelse(dd$ev == 0, "cens", ifelse(dd$ev == 1, "rel", "dc"))) 111s > 111s > set.seed(1440293) 111s > dat.kmi <- kmi(Surv(time, ev != 0) ~ 1, dd, etype = ev, nimp = 5) 111s > set.seed(1440293) 111s > dat.kmi.fact <- kmi(Surv(time, status != "cens") ~ 1, dd, etype = status, 111s + nimp = 5, failcode = "rel") 111s > set.seed(1440293) 111s > dat.kmi.mixed1 <- kmi(Surv(time, ev != 0) ~ 1, dd, etype = status, 111s + nimp = 5, failcode = "rel") 111s > set.seed(1440293) 111s > dat.kmi.mixed2 <- kmi(Surv(time, status != "cens") ~ 1, dd, etype = ev, 111s + nimp = 5, failcode = 1) 111s > 111s > 111s > fit.kmi <- cox.kmi(Surv(time, ev == 1) ~ cov, dat.kmi) 111s > fit.kmi.fact <- cox.kmi(Surv(time, status == "rel") ~ cov, dat.kmi) 111s > fit.kmi.mixed1 <- cox.kmi(Surv(time, status == "rel") ~ cov, dat.kmi.mixed1) 111s > fit.kmi.mixed2 <- cox.kmi(Surv(time, ev == 1) ~ cov, dat.kmi.mixed2) 111s > 111s > all.equal(coef(fit.kmi), coef(fit.kmi.fact)) 111s [1] TRUE 111s > all.equal(coef(fit.kmi), coef(fit.kmi.mixed1)) 111s [1] TRUE 111s > all.equal(coef(fit.kmi), coef(fit.kmi.mixed2)) 111s [1] TRUE 111s > all.equal(fit.kmi$variance, fit.kmi.fact$variance) 111s [1] TRUE 111s > all.equal(fit.kmi$variance, fit.kmi.mixed1$variance) 111s [1] TRUE 111s > all.equal(fit.kmi$variance, fit.kmi.mixed2$variance) 111s [1] TRUE 111s > 111s > ## fit.kmi 111s > 111s > ## summary(fit.kmi) 111s > 111s > ## fit.kmi.fact 111s > 111s > ## summary(fit.kmi.fact) 111s > 111s > ## avec bootstrap 111s > 111s > set.seed(867988) 111s > dat.kmib <- kmi(Surv(time, ev != 0) ~ 1, dd, etype = ev, nimp = 5, 111s + boot = TRUE, nboot = 5) 111s > set.seed(867988) 111s > dat.kmib.fact <- kmi(Surv(time, ev != 0) ~ 1, dd, etype = status, nimp = 5, 111s + boot = TRUE, nboot = 5, failcode = "rel") 111s > 111s > fit.kmib <- cox.kmi(Surv(time, ev == 1) ~ cov, dat.kmib) 111s > fit.kmib.fact <- cox.kmi(Surv(time, status == "rel") ~ cov, dat.kmib.fact) 111s > 111s > all.equal(coef(fit.kmib), coef(fit.kmib.fact)) 111s [1] TRUE 111s > 111s > fit.kmib 111s Call: 111s cox.kmi(formula = Surv(time, ev == 1) ~ cov, imp.data = dat.kmib) 111s 111s ***************** 111s Pooled estimates: 111s ***************** 111s coef exp(coef) se(coef) t p 111s cov -0.07328941 0.9293318 0.3126316 -0.2344274 0.8146571 111s 111s > fit.kmib.fact 111s Call: 111s cox.kmi(formula = Surv(time, status == "rel") ~ cov, imp.data = dat.kmib.fact) 111s 111s ***************** 111s Pooled estimates: 111s ***************** 111s coef exp(coef) se(coef) t p 111s cov -0.07328941 0.9293318 0.3126316 -0.2344274 0.8146571 111s 111s > 111s > summary(fit.kmib) 111s Call: 111s cox.kmi(formula = Surv(time, ev == 1) ~ cov, imp.data = dat.kmib) 111s 111s 111s ***************** 111s Pooled estimates: 111s ***************** 111s coef exp(coef) se(coef) t Pr(>|t|) 111s cov -0.07329 0.92933 0.31263 -0.234 0.815 111s 111s exp(coef) exp(-coef) lower .95 upper .95 111s cov 0.9293 1.076 0.5035 1.715 111s 111s > 111s > 111s > ### test 4 111s > 111s > data(icu.pneu) 111s > 111s > set.seed(1313) 111s > dat <- kmi(Surv(start, stop, status) ~ 1, data = icu.pneu, 111s + etype = event, id= id, failcode = 2, nimp = 5) 111s > 111s > ### add a factor for testing purposes 111s > icu.pneu$ev.fact <- factor(ifelse(icu.pneu$event == 3, "disch", "death")) 111s > 111s > icu.pneu$ev <- icu.pneu$event 111s > icu.pneu$ev[icu.pneu$status == 0] <- 0 111s > 111s > set.seed(1313) 111s > dat2 <- kmi(Surv(start, stop, ev != 0) ~ 1, data = icu.pneu, 111s + etype = ev, id= id, failcode = 2, nimp = 5) 111s > 111s > set.seed(1313) 111s > dat3 <- kmi(Surv(start, stop, status) ~ 1, data = icu.pneu, 111s + etype = ev.fact, id = id, failcode = "death", nimp = 5) 112s > 112s > a <- logical(5) 112s > for (i in 1:5) a[i] <- all.equal(dat$imputed.data[[i]][, 1], dat2$imputed.data[[i]][, 1]) 112s > a 112s [1] TRUE TRUE TRUE TRUE TRUE 112s > 112s > fit.kmi <- cox.kmi(Surv(start, stop, event == 2) ~ pneu, dat) 112s > 112s > fit.kmi2 <- cox.kmi(Surv(start, stop, ev == 2) ~ pneu, dat2) 112s > 112s > fit.kmi3 <- cox.kmi(Surv(start, stop, ev.fact == "death") ~ pneu, dat3) 112s > 112s > all.equal(fit.kmi$coefficients, fit.kmi2$coefficients) 112s [1] TRUE 112s > all.equal(coef(fit.kmi), coef(fit.kmi3)) 112s [1] TRUE 112s > all.equal(fit.kmi$variance, fit.kmi2$variance) 112s [1] TRUE 112s > 112s > fit.kmi 112s Call: 112s cox.kmi(formula = Surv(start, stop, event == 2) ~ pneu, imp.data = dat) 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t p 112s pneu1 1.10382 3.015664 0.2398608 4.60192 4.186147e-06 112s 112s > 112s > fit.kmi2 112s Call: 112s cox.kmi(formula = Surv(start, stop, ev == 2) ~ pneu, imp.data = dat2) 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t p 112s pneu1 1.10382 3.015664 0.2398608 4.60192 4.186147e-06 112s 112s > 112s > fit.kmi3 112s Call: 112s cox.kmi(formula = Surv(start, stop, ev.fact == "death") ~ pneu, 112s imp.data = dat3) 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t p 112s pneu1 1.10382 3.015664 0.2398608 4.60192 4.186147e-06 112s 112s > 112s > ## avec bootstrap 112s > 112s > set.seed(598085) 112s > dat <- kmi(Surv(start, stop, status) ~ 1, data = icu.pneu, 112s + etype = event, id= id, failcode = 2, nimp = 5, 112s + boot = TRUE, nboot = 5) 112s > 112s > set.seed(598085) 112s > dat2 <- kmi(Surv(start, stop, ev != 0) ~ 1, data = icu.pneu, 112s + etype = ev, id= id, failcode = 2, nimp = 5, 112s + boot = TRUE, nboot = 5) 112s > 112s > set.seed(598085) 112s > dat3 <- kmi(Surv(start, stop, status) ~ 1, data = icu.pneu, 112s + etype = ev.fact, id = id, failcode = "death", nimp = 5, 112s + boot = TRUE, nboot = 5) 112s > 112s > 112s > a <- logical(5) 112s > for (i in 1:5) a[i] <- all.equal(dat$imputed.data[[i]][, 1], dat2$imputed.data[[i]][, 1]) 112s > a 112s [1] TRUE TRUE TRUE TRUE TRUE 112s > 112s > fit.kmi <- cox.kmi(Surv(start, stop, event == 2) ~ pneu, dat) 112s > 112s > fit.kmi2 <- cox.kmi(Surv(start, stop, ev == 2) ~ pneu, dat2) 112s > 112s > fit.kmi3 <- cox.kmi(Surv(start, stop, ev.fact == "death") ~ pneu, dat3) 112s > 112s > all.equal(fit.kmi$coefficients, fit.kmi2$coefficients) 112s [1] TRUE 112s > all.equal(coef(fit.kmi), coef(fit.kmi3)) 112s [1] TRUE 112s > all.equal(fit.kmi$variance, fit.kmi2$variance) 112s [1] TRUE 112s > 112s > fit.kmi 112s Call: 112s cox.kmi(formula = Surv(start, stop, event == 2) ~ pneu, imp.data = dat) 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t p 112s pneu1 1.104148 3.016652 0.2399367 4.601829 4.188064e-06 112s 112s > 112s > fit.kmi2 112s Call: 112s cox.kmi(formula = Surv(start, stop, ev == 2) ~ pneu, imp.data = dat2) 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t p 112s pneu1 1.104148 3.016652 0.2399367 4.601829 4.188064e-06 112s 112s > 112s > fit.kmi3 112s Call: 112s cox.kmi(formula = Surv(start, stop, ev.fact == "death") ~ pneu, 112s imp.data = dat3) 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t p 112s pneu1 1.104148 3.016652 0.2399367 4.601829 4.188064e-06 112s 112s > 112s > ### with covariates 112s > ## classic 112s > set.seed(1) 112s > dd$juhu <- rnorm(nrow(dd)) 112s > 112s > set.seed(78223) 112s > imp.dd <- kmi(Surv(time, ev != 0) ~ juhu, dd, 112s + etype = ev, nimp = 5) 112s > set.seed(44889) 112s > imp.ddb <- kmi(Surv(time, ev != 0) ~ juhu, dd, nimp = 5, 112s + etype = ev, boot = TRUE, nboot = 5) 112s > 112s > summary(cox.kmi(Surv(time, ev == 1) ~ cov, imp.dd)) 112s Call: 112s cox.kmi(formula = Surv(time, ev == 1) ~ cov, imp.data = imp.dd) 112s 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t Pr(>|t|) 112s cov -0.0485 0.9527 0.3155 -0.154 0.878 112s 112s exp(coef) exp(-coef) lower .95 upper .95 112s cov 0.9527 1.05 0.5132 1.768 112s 112s > summary(cox.kmi(Surv(time, ev == 1) ~ cov, imp.ddb)) 112s Call: 112s cox.kmi(formula = Surv(time, ev == 1) ~ cov, imp.data = imp.ddb) 112s 112s 112s ***************** 112s Pooled estimates: 112s ***************** 112s coef exp(coef) se(coef) t Pr(>|t|) 112s cov -0.08706 0.91662 0.31606 -0.275 0.783 112s 112s exp(coef) exp(-coef) lower .95 upper .95 112s cov 0.9166 1.091 0.4932 1.704 112s 112s > 112s > ## time-dependent covariates 112s > set.seed(9763) 112s > imp.dat.c <- kmi(Surv(start, stop, status) ~ age + sex, 112s + data = icu.pneu, etype = event, id = id, 112s + failcode = 2, nimp = 5) 113s > 113s > set.seed(19832) 113s > imp.dat.cb <- kmi(Surv(start, stop, status) ~ age + sex, 113s + data = icu.pneu, etype = event, id = id, 113s + failcode = 2, nimp = 5, boot = TRUE, 113s + nboot = 5) 114s > 114s > summary(cox.kmi(Surv(start, stop, event == 2) ~ pneu, 114s + imp.dat.c)) 114s Call: 114s cox.kmi(formula = Surv(start, stop, event == 2) ~ pneu, imp.data = imp.dat.c) 114s 114s 114s ***************** 114s Pooled estimates: 114s ***************** 114s coef exp(coef) se(coef) t Pr(>|t|) 114s pneu1 1.117 3.055 0.240 4.654 3.25e-06 *** 114s --- 114s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 114s 114s exp(coef) exp(-coef) lower .95 upper .95 114s pneu1 3.055 0.3273 1.909 4.89 114s 114s > summary(cox.kmi(Surv(start, stop, event == 2) ~ pneu, 114s + imp.dat.cb)) 114s Call: 114s cox.kmi(formula = Surv(start, stop, event == 2) ~ pneu, imp.data = imp.dat.cb) 114s 114s 114s ***************** 114s Pooled estimates: 114s ***************** 114s coef exp(coef) se(coef) t Pr(>|t|) 114s pneu1 1.1077 3.0274 0.2403 4.609 4.04e-06 *** 114s --- 114s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 114s 114s exp(coef) exp(-coef) lower .95 upper .95 114s pneu1 3.027 0.3303 1.89 4.849 114s 114s > 114s > 114s > ## Test ordering of the data set 114s > 114s > data(icu.pneu) 114s > icu.pneu$outcome <- with(icu.pneu, status * event) 114s > 114s > mydata1 <- icu.pneu[1:2, ] 114s > mydata2 <- icu.pneu[3:1421, ] 114s > 114s > ## page 221 114s > set.seed(453) 114s > imp.dat <- kmi(Surv(start, stop, outcome != 0) ~ 1, 114s + data = icu.pneu, etype = outcome, 114s + id = id, failcode = 2, nimp = 10) 114s > 114s > ## page 222 114s > kmi.sh.hap <- cox.kmi(Surv(start, stop, outcome == 2) ~ pneu, imp.dat) 114s > summary(kmi.sh.hap) 114s Call: 114s cox.kmi(formula = Surv(start, stop, outcome == 2) ~ pneu, imp.data = imp.dat) 114s 114s 114s ***************** 114s Pooled estimates: 114s ***************** 114s coef exp(coef) se(coef) t Pr(>|t|) 114s pneu1 1.1057 3.0213 0.2399 4.608 4.06e-06 *** 114s --- 114s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 114s 114s exp(coef) exp(-coef) lower .95 upper .95 114s pneu1 3.021 0.331 1.888 4.835 114s 114s > 114s > newicu.pneu <- as.data.frame(rbind( mydata2, mydata1)) 114s > tail(newicu.pneu) 114s id start stop status event pneu adm.cens.exit age sex outcome 114s 1418 2020485 0 21 1 3 0 445 69.85106 M 3 114s 1419 2020508 0 49 1 3 0 537 60.23257 M 3 114s 1420 2020634 0 35 1 3 0 555 59.52186 M 3 114s 1421 2020811 0 3 1 3 0 465 73.95806 F 3 114s 1 12 0 3 1 3 0 421 62.53307 F 3 114s 2 41 0 5 1 3 0 545 75.34153 F 3 114s > 114s > set.seed(453) 114s > imp.datnew <- kmi(Surv(start, stop, outcome != 0) ~ 1, 114s + data = newicu.pneu, etype = outcome, 114s + id = id, failcode = 2, nimp = 10) 115s > 115s > # page 222 115s > kmi.sh.hap <- cox.kmi(Surv(start, stop, outcome == 2) ~ pneu, imp.datnew) 115s > summary(kmi.sh.hap) 115s Call: 115s cox.kmi(formula = Surv(start, stop, outcome == 2) ~ pneu, imp.data = imp.datnew) 115s 115s 115s ***************** 115s Pooled estimates: 115s ***************** 115s coef exp(coef) se(coef) t Pr(>|t|) 115s pneu1 1.1057 3.0213 0.2399 4.608 4.06e-06 *** 115s --- 115s Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 115s 115s exp(coef) exp(-coef) lower .95 upper .95 115s pneu1 3.021 0.331 1.888 4.835 115s 115s > 115s autopkgtest [18:57:13]: test run-unit-test: -----------------------] 116s run-unit-test PASS 116s autopkgtest [18:57:14]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 116s autopkgtest [18:57:14]: test pkg-r-autopkgtest: preparing testbed 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s The following additional packages will be installed: 119s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 119s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 119s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 119s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 119s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 119s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 119s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 119s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 119s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 119s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 119s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 119s Suggested packages: 119s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 119s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 119s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 119s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 119s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 119s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 119s texlive-latex-recommended texlive-latex-extra texinfo 119s Recommended packages: 119s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 120s The following NEW packages will be installed: 120s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 120s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 120s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 120s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 120s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 120s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 120s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 120s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 120s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 120s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 120s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 120s pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 120s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 92.8 MB/92.8 MB of archives. 120s After this operation, 343 MB of additional disk space will be used. 120s Get:1 /tmp/autopkgtest.JJ9rQG/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 120s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 120s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 120s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 120s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 120s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 120s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 120s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 120s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 120s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 120s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 121s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 121s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 121s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 121s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 121s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 121s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 121s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 121s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 121s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 121s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 121s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 121s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 121s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 121s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 121s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 121s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 121s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 121s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 122s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 122s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 122s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 122s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 122s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 122s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 122s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 122s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 122s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 122s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 122s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 122s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 122s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 122s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 122s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 122s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 122s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 122s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 122s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 122s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 122s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 122s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 122s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 122s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 122s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 122s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 122s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 122s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 122s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 122s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 122s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 122s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 122s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 123s Fetched 92.8 MB in 3s (32.6 MB/s) 123s Selecting previously unselected package libc-dev-bin. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77206 files and directories currently installed.) 123s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 123s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 123s Selecting previously unselected package linux-libc-dev:arm64. 123s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 123s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 124s Selecting previously unselected package libcrypt-dev:arm64. 124s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 124s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 124s Selecting previously unselected package libtirpc-dev:arm64. 124s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 124s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 124s Selecting previously unselected package libnsl-dev:arm64. 124s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ... 124s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 124s Selecting previously unselected package rpcsvc-proto. 124s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 124s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 124s Selecting previously unselected package libc6-dev:arm64. 124s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ... 124s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 124s Selecting previously unselected package libisl23:arm64. 124s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ... 124s Unpacking libisl23:arm64 (0.26-3) ... 124s Selecting previously unselected package libmpc3:arm64. 124s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 124s Unpacking libmpc3:arm64 (1.3.1-1) ... 124s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 124s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 124s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 124s Selecting previously unselected package cpp-13. 124s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 124s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 124s Selecting previously unselected package cpp-aarch64-linux-gnu. 124s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 124s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 124s Selecting previously unselected package cpp. 124s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 124s Unpacking cpp (4:13.2.0-7ubuntu1) ... 124s Selecting previously unselected package libcc1-0:arm64. 124s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 124s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 124s Selecting previously unselected package libitm1:arm64. 124s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ... 124s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 124s Selecting previously unselected package libatomic1:arm64. 124s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 124s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 124s Selecting previously unselected package libasan8:arm64. 124s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ... 124s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 124s Selecting previously unselected package liblsan0:arm64. 124s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 124s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 124s Selecting previously unselected package libtsan2:arm64. 125s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 125s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 125s Selecting previously unselected package libubsan1:arm64. 125s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 125s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 125s Selecting previously unselected package libhwasan0:arm64. 125s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 125s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 125s Selecting previously unselected package libgcc-13-dev:arm64. 125s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 125s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package gcc-13. 125s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package gcc-aarch64-linux-gnu. 125s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 125s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 125s Selecting previously unselected package gcc. 125s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 125s Unpacking gcc (4:13.2.0-7ubuntu1) ... 125s Selecting previously unselected package libstdc++-13-dev:arm64. 125s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package g++-13-aarch64-linux-gnu. 126s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package g++-13. 126s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking g++-13 (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package g++-aarch64-linux-gnu. 126s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 126s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Selecting previously unselected package g++. 126s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 126s Unpacking g++ (4:13.2.0-7ubuntu1) ... 126s Selecting previously unselected package build-essential. 126s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 126s Unpacking build-essential (12.10ubuntu1) ... 126s Selecting previously unselected package dctrl-tools. 126s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 126s Unpacking dctrl-tools (2.24-3build2) ... 126s Selecting previously unselected package libgfortran-13-dev:arm64. 126s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 126s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package gfortran-13. 126s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package gfortran-aarch64-linux-gnu. 126s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 126s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Selecting previously unselected package gfortran. 126s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 126s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 126s Selecting previously unselected package icu-devtools. 126s Preparing to unpack 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127s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 127s Selecting previously unselected package libjpeg-dev:arm64. 127s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 127s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 127s Selecting previously unselected package liblapack-dev:arm64. 127s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 127s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 127s Selecting previously unselected package libncurses-dev:arm64. 127s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 127s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 127s Selecting previously unselected package libpcre2-16-0:arm64. 127s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 127s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 127s Selecting previously unselected package libpcre2-32-0:arm64. 127s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 127s Unpacking 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Unpacking r-base-dev (4.3.3-2build1) ... 127s Selecting previously unselected package pkg-r-autopkgtest. 127s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 127s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 127s Selecting previously unselected package autopkgtest-satdep. 128s Preparing to unpack .../61-2-autopkgtest-satdep.deb ... 128s Unpacking autopkgtest-satdep (0) ... 128s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 128s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 128s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 128s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 128s Setting up libpkgconf3:arm64 (1.8.1-2) ... 128s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 128s Setting up libmpc3:arm64 (1.3.1-1) ... 128s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 128s Setting up icu-devtools (74.2-1ubuntu1) ... 128s Setting up pkgconf-bin (1.8.1-2) ... 128s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 128s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 128s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 128s Setting up libnsl-dev:arm64 (1.3.0-3) ... 128s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 128s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 128s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 128s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 128s Setting up libisl23:arm64 (0.26-3) ... 128s Setting up libc-dev-bin (2.39-0ubuntu2) ... 128s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 128s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 128s Setting up libblas-dev:arm64 (3.12.0-3) ... 128s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 128s Setting up dctrl-tools (2.24-3build2) ... 128s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 128s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 128s Setting up pkgconf:arm64 (1.8.1-2) ... 128s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Setting up liblapack-dev:arm64 (3.12.0-3) ... 128s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 128s Setting up pkg-config:arm64 (1.8.1-2) ... 128s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 128s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 128s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 128s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 128s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 128s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 128s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 128s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 128s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 128s Setting up cpp-13 (13.2.0-17ubuntu2) ... 128s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 128s Setting up libreadline-dev:arm64 (8.2-3.1) ... 128s Setting up gcc-13 (13.2.0-17ubuntu2) ... 128s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 128s Setting up cpp (4:13.2.0-7ubuntu1) ... 128s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 128s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 128s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Setting up g++-13 (13.2.0-17ubuntu2) ... 128s Setting up libpng-dev:arm64 (1.6.43-3) ... 128s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 128s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 128s Setting up gcc (4:13.2.0-7ubuntu1) ... 128s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 128s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Setting up gfortran (4:13.2.0-7ubuntu1) ... 128s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 128s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 128s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 128s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 128s Setting up g++ (4:13.2.0-7ubuntu1) ... 128s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 128s Setting up build-essential (12.10ubuntu1) ... 128s Setting up r-base-dev (4.3.3-2build1) ... 128s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 128s Setting up autopkgtest-satdep (0) ... 128s Processing triggers for man-db (2.12.0-3) ... 128s Processing triggers for install-info (7.1-3) ... 128s Processing triggers for libc-bin (2.39-0ubuntu2) ... 132s (Reading database ... 80765 files and directories currently installed.) 132s Removing autopkgtest-satdep (0) ... 132s autopkgtest [18:57:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 132s autopkgtest [18:57:30]: test pkg-r-autopkgtest: [----------------------- 132s Test: Try to load the R library kmi 133s 133s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 133s Copyright (C) 2024 The R Foundation for Statistical Computing 133s Platform: aarch64-unknown-linux-gnu (64-bit) 133s 133s R is free software and comes with ABSOLUTELY NO WARRANTY. 133s You are welcome to redistribute it under certain conditions. 133s Type 'license()' or 'licence()' for distribution details. 133s 133s R is a collaborative project with many contributors. 133s Type 'contributors()' for more information and 133s 'citation()' on how to cite R or R packages in publications. 133s 133s Type 'demo()' for some demos, 'help()' for on-line help, or 133s 'help.start()' for an HTML browser interface to help. 133s Type 'q()' to quit R. 133s 133s > library('kmi') 134s > 134s > 134s Other tests are currently unsupported! 134s They will be progressively added. 134s autopkgtest [18:57:32]: test pkg-r-autopkgtest: -----------------------] 134s autopkgtest [18:57:32]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 134s pkg-r-autopkgtest PASS 135s autopkgtest [18:57:33]: @@@@@@@@@@@@@@@@@@@@ summary 135s run-unit-test PASS 135s pkg-r-autopkgtest PASS 146s Creating nova instance adt-noble-arm64-r-cran-kmi-20240316-185518-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...