0s autopkgtest [18:50:53]: starting date and time: 2024-03-16 18:50:53+0000 0s autopkgtest [18:50:53]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:50:53]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ommp48ed/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-ipred --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-7.secgroup --name adt-noble-arm64-r-cran-ipred-20240316-185053-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 103s autopkgtest [18:52:36]: testbed dpkg architecture: arm64 103s autopkgtest [18:52:36]: testbed apt version: 2.7.12 103s autopkgtest [18:52:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 104s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 104s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 105s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 105s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 105s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 105s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 105s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 105s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 105s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 105s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 106s Fetched 9084 kB in 2s (5424 kB/s) 106s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s Calculating upgrade... 110s The following packages will be REMOVED: 110s libglib2.0-0 libssl3 110s The following NEW packages will be installed: 110s libglib2.0-0t64 libssl3t64 xdg-user-dirs 110s The following packages have been kept back: 110s curl 110s The following packages will be upgraded: 110s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 110s ubuntu-minimal ubuntu-standard 110s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 110s Need to get 4613 kB of archives. 110s After this operation, 211 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 111s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 111s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 111s Fetched 4613 kB in 1s (6665 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 112s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 112s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 112s udisks2 depends on libglib2.0-0 (>= 2.77.0). 112s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 112s python3-gi depends on libglib2.0-0 (>= 2.77.0). 112s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 112s netplan.io depends on libglib2.0-0 (>= 2.70.0). 112s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 112s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 112s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 112s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 112s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 112s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 112s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 112s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 112s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 112s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 112s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 112s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s fwupd depends on libglib2.0-0 (>= 2.79.0). 112s bolt depends on libglib2.0-0 (>= 2.56.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 112s Selecting previously unselected package libglib2.0-0t64:arm64. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 112s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 112s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 112s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 112s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 112s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 112s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 112s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 112s wget depends on libssl3 (>= 3.0.0). 112s u-boot-tools depends on libssl3 (>= 3.0.0). 112s tnftp depends on libssl3 (>= 3.0.0). 112s tcpdump depends on libssl3 (>= 3.0.0). 112s systemd-resolved depends on libssl3 (>= 3.0.0). 112s systemd depends on libssl3 (>= 3.0.0). 112s sudo depends on libssl3 (>= 3.0.0). 112s sbsigntool depends on libssl3 (>= 3.0.0). 112s rsync depends on libssl3 (>= 3.0.0). 112s python3-cryptography depends on libssl3 (>= 3.0.0). 112s openssh-server depends on libssl3 (>= 3.0.10). 112s openssh-client depends on libssl3 (>= 3.0.10). 112s mtd-utils depends on libssl3 (>= 3.0.0). 112s mokutil depends on libssl3 (>= 3.0.0). 112s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 112s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 112s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 112s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 112s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 112s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 112s libnvme1 depends on libssl3 (>= 3.0.0). 112s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 112s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 112s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 112s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 112s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 112s kmod depends on libssl3 (>= 3.0.0). 112s dhcpcd-base depends on libssl3 (>= 3.0.0). 112s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 112s Selecting previously unselected package libssl3t64:arm64. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 112s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 112s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 112s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 112s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 112s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 112s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 112s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 112s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 113s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 113s Unpacking ubuntu-minimal (1.536) over (1.535) ... 113s Selecting previously unselected package xdg-user-dirs. 113s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 113s Unpacking xdg-user-dirs (0.18-1) ... 113s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 113s Unpacking ubuntu-standard (1.536) over (1.535) ... 113s Setting up ubuntu-minimal (1.536) ... 113s Setting up xdg-user-dirs (0.18-1) ... 113s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 113s Setting up libtirpc-common (1.3.4+ds-1.1) ... 113s Setting up ubuntu-standard (1.536) ... 113s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 113s No schema files found: doing nothing. 113s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 113s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 113s Setting up openssl (3.0.13-0ubuntu1) ... 113s Setting up readline-common (8.2-3.1) ... 113s Processing triggers for man-db (2.12.0-3) ... 114s Processing triggers for install-info (7.1-3) ... 114s Processing triggers for libc-bin (2.39-0ubuntu2) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 116s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 116s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 116s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 116s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 117s Reading package lists... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 119s The following packages have been kept back: 119s curl 119s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 122s autopkgtest [18:52:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 122s autopkgtest [18:52:55]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-ipred 124s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-ipred 0.9-14-1 (dsc) [2171 B] 124s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-ipred 0.9-14-1 (tar) [176 kB] 124s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-ipred 0.9-14-1 (diff) [2768 B] 124s gpgv: Signature made Fri Jun 23 09:54:58 2023 UTC 124s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 124s gpgv: issuer "tille@debian.org" 124s gpgv: Can't check signature: No public key 124s dpkg-source: warning: cannot verify inline signature for ./r-cran-ipred_0.9-14-1.dsc: no acceptable signature found 125s autopkgtest [18:52:58]: testing package r-cran-ipred version 0.9-14-1 125s autopkgtest [18:52:58]: build not needed 126s autopkgtest [18:52:59]: test run-unit-test: preparing testbed 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s Starting pkgProblemResolver with broken count: 0 128s Starting 2 pkgProblemResolver with broken count: 0 128s Done 128s The following additional packages will be installed: 128s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 128s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 128s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 128s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 128s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 128s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 128s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 128s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core 128s r-cran-class r-cran-codetools r-cran-data.table r-cran-diagram r-cran-digest 128s r-cran-future r-cran-future.apply r-cran-globals r-cran-ipred 128s r-cran-kernsmooth r-cran-lattice r-cran-lava r-cran-listenv r-cran-littler 128s r-cran-mass r-cran-matrix r-cran-mlbench r-cran-nnet r-cran-numderiv 128s r-cran-parallelly r-cran-pkgkitten r-cran-prodlim r-cran-progressr 128s r-cran-rcpp r-cran-rpart r-cran-shape r-cran-squarem r-cran-survival unzip 128s x11-common xdg-utils zip 128s Suggested packages: 128s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 128s r-cran-mvtnorm r-cran-th.data r-cran-randomforest r-cran-party r-cran-getopt 128s r-cran-inline 128s Recommended packages: 128s r-recommended r-base-dev r-doc-html r-cran-bit64 r-cran-bit r-cran-curl 128s r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-yaml 128s r-cran-knitr r-cran-rmarkdown r-cran-rhpcblasctl r-cran-r.rsp 128s r-cran-markdown r-cran-ellipse r-cran-fields r-cran-geepack r-bioc-graph 128s r-cran-bookdown r-cran-igraph r-cran-lavasearch2 r-cran-lme4 r-cran-mets 128s r-cran-nlme r-cran-optimx r-cran-polycor r-cran-quantreg r-cran-rgl 128s r-cran-testthat r-cran-cli r-cran-crayon r-cran-pbmcapply r-cran-progress 128s r-cran-purrr r-cran-foreach r-cran-plyr r-cran-furrr r-cran-rstudioapi 128s r-cran-shiny r-cran-commonmark r-cran-base64enc r-cran-setrng 128s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 128s x11-xserver-utils 128s The following packages will be REMOVED: 128s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 128s The following NEW packages will be installed: 128s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 128s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 128s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 128s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 128s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 128s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 128s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 128s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core 128s r-cran-class r-cran-codetools r-cran-data.table r-cran-diagram r-cran-digest 128s r-cran-future r-cran-future.apply r-cran-globals r-cran-ipred 128s r-cran-kernsmooth r-cran-lattice r-cran-lava r-cran-listenv r-cran-littler 128s r-cran-mass r-cran-matrix r-cran-mlbench r-cran-nnet r-cran-numderiv 128s r-cran-parallelly r-cran-pkgkitten r-cran-prodlim r-cran-progressr 128s r-cran-rcpp r-cran-rpart r-cran-shape r-cran-squarem r-cran-survival unzip 128s x11-common xdg-utils zip 128s The following packages will be upgraded: 128s curl 129s 1 upgraded, 79 newly installed, 5 to remove and 0 not upgraded. 129s Need to get 62.6 MB/62.6 MB of archives. 129s After this operation, 119 MB of additional disk space will be used. 129s Get:1 /tmp/autopkgtest.Kj1Evr/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 129s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 129s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 129s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 129s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 129s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 129s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 129s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 129s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 129s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 129s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 129s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 129s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 129s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 129s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 129s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 129s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 129s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 129s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 129s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 129s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 129s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 129s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 129s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 129s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 129s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 129s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 129s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 129s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 130s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 130s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 130s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 130s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 130s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 130s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 130s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 130s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 130s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 130s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 130s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 130s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 130s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 130s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 130s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 130s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 130s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 130s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 130s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 130s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 130s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 130s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 130s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 130s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 130s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 130s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 130s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 130s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 130s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shape all 1.4.6-1 [770 kB] 130s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diagram all 1.6.5-2 [656 kB] 130s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 130s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 130s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 130s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 131s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 131s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 131s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 131s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 131s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 131s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 131s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 131s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 131s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 131s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 131s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 131s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progressr all 0.14.0-1 [338 kB] 131s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-squarem all 2021.1-1 [179 kB] 131s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 131s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prodlim arm64 2023.08.28-1 [407 kB] 131s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ipred arm64 0.9-14-1 [383 kB] 131s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mlbench arm64 2.1-3.1-1 [1044 kB] 132s Preconfiguring packages ... 132s Fetched 62.6 MB in 3s (25.0 MB/s) 132s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 132s wget depends on libpsl5 (>= 0.16.0). 132s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 132s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 132s 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 132s Removing libpsl5:arm64 (0.21.2-1build1) ... 132s Selecting previously unselected package libpsl5t64:arm64. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 132s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 132s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 132s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 132s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 132s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 132s Selecting previously unselected package libcurl4t64:arm64. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 132s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 132s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 132s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 132s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 132s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 132s 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 132s Removing libpng16-16:arm64 (1.6.43-1) ... 132s Selecting previously unselected package libpng16-16t64:arm64. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 132s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 132s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 133s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 133s parted depends on libreadline8 (>= 6.0). 133s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 133s gpgsm depends on libreadline8 (>= 6.0). 133s gpgconf depends on libreadline8 (>= 6.0). 133s gpg depends on libreadline8 (>= 6.0). 133s gawk depends on libreadline8 (>= 6.0). 133s fdisk depends on libreadline8 (>= 6.0). 133s 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 133s Removing libreadline8:arm64 (8.2-3) ... 133s Selecting previously unselected package libreadline8t64:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 133s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 133s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 133s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 133s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 133s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 133s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 133s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 133s lsof depends on libtirpc3 (>= 1.0.2). 133s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 133s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 133s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 133s iproute2 depends on libtirpc3 (>= 1.0.2). 133s 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 133s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 133s Selecting previously unselected package libtirpc3t64:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 133s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 133s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 133s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 133s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 133s Selecting previously unselected package fonts-dejavu-mono. 133s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 133s Unpacking fonts-dejavu-mono (2.37-8) ... 133s Selecting previously unselected package fonts-dejavu-core. 133s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 133s Unpacking fonts-dejavu-core (2.37-8) ... 133s Selecting previously unselected package fontconfig-config. 133s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 133s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 133s Selecting previously unselected package libfontconfig1:arm64. 133s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 133s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 133s Selecting previously unselected package fontconfig. 133s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 133s Unpacking fontconfig (2.15.0-1ubuntu1) ... 133s Selecting previously unselected package libblas3:arm64. 133s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 133s Unpacking libblas3:arm64 (3.12.0-3) ... 134s Selecting previously unselected package libpixman-1-0:arm64. 134s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 134s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 134s Selecting previously unselected package libxcb-render0:arm64. 134s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 134s Unpacking libxcb-render0:arm64 (1.15-1) ... 134s Selecting previously unselected package libxcb-shm0:arm64. 134s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 134s Unpacking libxcb-shm0:arm64 (1.15-1) ... 134s Selecting previously unselected package libxrender1:arm64. 134s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 134s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 134s Selecting previously unselected package libcairo2:arm64. 134s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 134s Unpacking libcairo2:arm64 (1.18.0-1) ... 134s Selecting previously unselected package libdatrie1:arm64. 134s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 134s Unpacking libdatrie1:arm64 (0.2.13-3) ... 134s Selecting previously unselected package libdeflate0:arm64. 134s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 134s Unpacking libdeflate0:arm64 (1.19-1) ... 134s Selecting previously unselected package libgfortran5:arm64. 134s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 134s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 134s Selecting previously unselected package libgomp1:arm64. 134s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 134s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 134s Selecting previously unselected package libgraphite2-3:arm64. 134s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 134s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 134s Selecting previously unselected package libharfbuzz0b:arm64. 134s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_arm64.deb ... 134s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 134s Selecting previously unselected package x11-common. 134s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu2_all.deb ... 134s Unpacking x11-common (1:7.7+23ubuntu2) ... 134s Selecting previously unselected package libice6:arm64. 134s Preparing to unpack .../19-libice6_2%3a1.0.10-1build2_arm64.deb ... 134s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 134s Selecting previously unselected package libjpeg-turbo8:arm64. 134s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 134s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 134s Selecting previously unselected package libjpeg8:arm64. 134s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_arm64.deb ... 134s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 134s Selecting previously unselected package liblapack3:arm64. 134s Preparing to unpack .../22-liblapack3_3.12.0-3_arm64.deb ... 134s Unpacking liblapack3:arm64 (3.12.0-3) ... 134s Selecting previously unselected package liblerc4:arm64. 134s Preparing to unpack .../23-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 134s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 134s Selecting previously unselected package libthai-data. 134s Preparing to unpack .../24-libthai-data_0.1.29-2_all.deb ... 134s Unpacking libthai-data (0.1.29-2) ... 134s Selecting previously unselected package libthai0:arm64. 134s Preparing to unpack .../25-libthai0_0.1.29-2_arm64.deb ... 134s Unpacking libthai0:arm64 (0.1.29-2) ... 134s Selecting previously unselected package libpango-1.0-0:arm64. 134s Preparing to unpack .../26-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 134s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 134s Selecting previously unselected package libpangoft2-1.0-0:arm64. 134s Preparing to unpack .../27-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 134s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 134s Selecting previously unselected package libpangocairo-1.0-0:arm64. 134s Preparing to unpack .../28-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 134s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 134s Selecting previously unselected package libpaper1:arm64. 134s Preparing to unpack .../29-libpaper1_1.1.29_arm64.deb ... 134s Unpacking libpaper1:arm64 (1.1.29) ... 135s Selecting previously unselected package libpaper-utils. 135s Preparing to unpack .../30-libpaper-utils_1.1.29_arm64.deb ... 135s Unpacking libpaper-utils (1.1.29) ... 135s Selecting previously unselected package libsharpyuv0:arm64. 135s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_arm64.deb ... 135s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 135s Selecting previously unselected package libsm6:arm64. 135s Preparing to unpack .../32-libsm6_2%3a1.2.3-1build2_arm64.deb ... 135s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 135s Selecting previously unselected package libtcl8.6:arm64. 135s Preparing to unpack .../33-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 135s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 135s Selecting previously unselected package libjbig0:arm64. 135s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 135s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 135s Selecting previously unselected package libwebp7:arm64. 135s Preparing to unpack .../35-libwebp7_1.3.2-0.4_arm64.deb ... 135s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 135s Selecting previously unselected package libtiff6:arm64. 135s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 135s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 135s Selecting previously unselected package libxft2:arm64. 135s Preparing to unpack .../37-libxft2_2.3.6-1_arm64.deb ... 135s Unpacking libxft2:arm64 (2.3.6-1) ... 135s Selecting previously unselected package libxss1:arm64. 135s Preparing to unpack .../38-libxss1_1%3a1.2.3-1build2_arm64.deb ... 135s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 135s Selecting previously unselected package libtk8.6:arm64. 135s Preparing to unpack .../39-libtk8.6_8.6.13-2_arm64.deb ... 135s Unpacking libtk8.6:arm64 (8.6.13-2) ... 135s Selecting previously unselected package libxt6t64:arm64. 135s Preparing to unpack .../40-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 135s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 135s Selecting previously unselected package zip. 135s Preparing to unpack .../41-zip_3.0-13_arm64.deb ... 135s Unpacking zip (3.0-13) ... 135s Selecting previously unselected package unzip. 135s Preparing to unpack .../42-unzip_6.0-28ubuntu3_arm64.deb ... 135s Unpacking unzip (6.0-28ubuntu3) ... 135s Selecting previously unselected package xdg-utils. 135s Preparing to unpack .../43-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 135s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 135s Selecting previously unselected package r-base-core. 135s Preparing to unpack .../44-r-base-core_4.3.3-2build1_arm64.deb ... 135s Unpacking r-base-core (4.3.3-2build1) ... 136s Selecting previously unselected package r-cran-littler. 136s Preparing to unpack .../45-r-cran-littler_0.3.19-1_arm64.deb ... 136s Unpacking r-cran-littler (0.3.19-1) ... 136s Selecting previously unselected package littler. 136s Preparing to unpack .../46-littler_0.3.19-1_all.deb ... 136s Unpacking littler (0.3.19-1) ... 136s Selecting previously unselected package r-cran-mass. 136s Preparing to unpack .../47-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 136s Unpacking r-cran-mass (7.3-60.0.1-1) ... 136s Selecting previously unselected package r-cran-class. 136s Preparing to unpack .../48-r-cran-class_7.3-22-2_arm64.deb ... 136s Unpacking r-cran-class (7.3-22-2) ... 136s Selecting previously unselected package r-cran-codetools. 136s Preparing to unpack .../49-r-cran-codetools_0.2-19-1_all.deb ... 136s Unpacking r-cran-codetools (0.2-19-1) ... 136s Selecting previously unselected package r-cran-data.table. 136s Preparing to unpack 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unselected package r-cran-parallelly. 136s Preparing to unpack .../56-r-cran-parallelly_1.37.1-1_arm64.deb ... 136s Unpacking r-cran-parallelly (1.37.1-1) ... 136s Selecting previously unselected package r-cran-future. 136s Preparing to unpack .../57-r-cran-future_1.33.1+dfsg-1_all.deb ... 136s Unpacking r-cran-future (1.33.1+dfsg-1) ... 136s Selecting previously unselected package r-cran-future.apply. 136s Preparing to unpack .../58-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 136s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 136s Selecting previously unselected package r-cran-lattice. 137s Preparing to unpack .../59-r-cran-lattice_0.22-5-1_arm64.deb ... 137s Unpacking r-cran-lattice (0.22-5-1) ... 137s Selecting previously unselected package r-cran-matrix. 137s Preparing to unpack .../60-r-cran-matrix_1.6-5-1_arm64.deb ... 137s Unpacking r-cran-matrix (1.6-5-1) ... 137s Selecting previously unselected package r-cran-survival. 137s Preparing to unpack .../61-r-cran-survival_3.5-8-1_arm64.deb ... 137s Unpacking r-cran-survival (3.5-8-1) ... 137s Selecting previously unselected package r-cran-rpart. 137s Preparing to unpack .../62-r-cran-rpart_4.1.23-1_arm64.deb ... 137s Unpacking r-cran-rpart (4.1.23-1) ... 137s Selecting previously unselected package r-cran-nnet. 137s Preparing to unpack .../63-r-cran-nnet_7.3-19-2_arm64.deb ... 137s Unpacking r-cran-nnet (7.3-19-2) ... 137s Selecting previously unselected package r-cran-pkgkitten. 137s Preparing to unpack .../64-r-cran-pkgkitten_0.2.3-1_all.deb ... 137s Unpacking r-cran-pkgkitten (0.2.3-1) ... 137s Selecting previously unselected package r-cran-rcpp. 137s Preparing to unpack .../65-r-cran-rcpp_1.0.12-1_arm64.deb ... 137s Unpacking r-cran-rcpp (1.0.12-1) ... 137s Selecting previously unselected package r-cran-kernsmooth. 137s Preparing to unpack .../66-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 137s Unpacking r-cran-kernsmooth (2.23-22-1) ... 137s Selecting previously unselected package r-cran-numderiv. 137s Preparing to unpack .../67-r-cran-numderiv_2016.8-1.1-3_all.deb ... 137s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 137s Selecting previously unselected package r-cran-progressr. 137s Preparing to unpack .../68-r-cran-progressr_0.14.0-1_all.deb ... 137s Unpacking r-cran-progressr (0.14.0-1) ... 138s Selecting previously unselected package r-cran-squarem. 138s Preparing to unpack .../69-r-cran-squarem_2021.1-1_all.deb ... 138s Unpacking r-cran-squarem (2021.1-1) ... 138s Selecting previously unselected package r-cran-lava. 138s Preparing to unpack .../70-r-cran-lava_1.7.3+dfsg-1_all.deb ... 138s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 138s Selecting previously unselected package r-cran-prodlim. 138s Preparing to unpack .../71-r-cran-prodlim_2023.08.28-1_arm64.deb ... 138s Unpacking r-cran-prodlim (2023.08.28-1) ... 138s Selecting previously unselected package r-cran-ipred. 138s Preparing to unpack .../72-r-cran-ipred_0.9-14-1_arm64.deb ... 138s Unpacking r-cran-ipred (0.9-14-1) ... 138s Selecting previously unselected package r-cran-mlbench. 138s Preparing to unpack .../73-r-cran-mlbench_2.1-3.1-1_arm64.deb ... 138s Unpacking r-cran-mlbench (2.1-3.1-1) ... 138s Selecting previously unselected package autopkgtest-satdep. 138s Preparing to unpack .../74-1-autopkgtest-satdep.deb ... 138s Unpacking autopkgtest-satdep (0) ... 138s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 138s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 138s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 138s Setting up libpaper1:arm64 (1.1.29) ... 139s 139s Creating config file /etc/papersize with new version 139s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 139s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 139s Setting up libdatrie1:arm64 (0.2.13-3) ... 139s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 139s Setting up libxcb-render0:arm64 (1.15-1) ... 139s Setting up unzip (6.0-28ubuntu3) ... 139s Setting up x11-common (1:7.7+23ubuntu2) ... 140s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 140s Setting up libdeflate0:arm64 (1.19-1) ... 140s Setting up libxcb-shm0:arm64 (1.15-1) ... 140s Setting up libpaper-utils (1.1.29) ... 140s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 140s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 140s Setting up zip (3.0-13) ... 140s Setting up libblas3:arm64 (3.12.0-3) ... 140s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 140s Setting up fonts-dejavu-mono (2.37-8) ... 140s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 140s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 140s Setting up fonts-dejavu-core (2.37-8) ... 140s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 140s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 140s Setting up libwebp7:arm64 (1.3.2-0.4) ... 140s Setting up libreadline8t64:arm64 (8.2-3.1) ... 140s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 140s Setting up libthai-data (0.1.29-2) ... 140s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 140s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 140s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 140s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 140s Setting up libice6:arm64 (2:1.0.10-1build2) ... 140s Setting up liblapack3:arm64 (3.12.0-3) ... 140s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 140s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 140s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 140s Setting up libthai0:arm64 (0.1.29-2) ... 140s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 140s Setting up curl (8.5.0-2ubuntu7) ... 140s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 140s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 140s Setting up fontconfig (2.15.0-1ubuntu1) ... 142s Regenerating fonts cache... done. 142s Setting up libxft2:arm64 (2.3.6-1) ... 142s Setting up libtk8.6:arm64 (8.6.13-2) ... 142s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 142s Setting up libcairo2:arm64 (1.18.0-1) ... 142s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 142s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 142s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 142s Setting up r-base-core (4.3.3-2build1) ... 142s 142s Creating config file /etc/R/Renviron with new version 142s Setting up r-cran-squarem (2021.1-1) ... 142s Setting up r-cran-lattice (0.22-5-1) ... 142s Setting up r-cran-nnet (7.3-19-2) ... 142s Setting up r-cran-pkgkitten (0.2.3-1) ... 142s Setting up r-cran-numderiv (2016.8-1.1-3) ... 142s Setting up r-cran-littler (0.3.19-1) ... 142s Setting up r-cran-rcpp (1.0.12-1) ... 142s Setting up r-cran-codetools (0.2-19-1) ... 142s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 142s Setting up littler (0.3.19-1) ... 142s Setting up r-cran-digest (0.6.34-1) ... 142s Setting up r-cran-mass (7.3-60.0.1-1) ... 142s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 142s Setting up r-cran-mlbench (2.1-3.1-1) ... 142s Setting up r-cran-progressr (0.14.0-1) ... 142s Setting up r-cran-shape (1.4.6-1) ... 142s Setting up r-cran-parallelly (1.37.1-1) ... 142s Setting up r-cran-diagram (1.6.5-2) ... 142s Setting up r-cran-matrix (1.6-5-1) ... 142s Setting up r-cran-kernsmooth (2.23-22-1) ... 142s Setting up r-cran-globals (0.16.2-1) ... 142s Setting up r-cran-class (7.3-22-2) ... 142s Setting up r-cran-survival (3.5-8-1) ... 142s Setting up r-cran-future (1.33.1+dfsg-1) ... 142s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 142s Setting up r-cran-lava (1.7.3+dfsg-1) ... 142s Setting up r-cran-prodlim (2023.08.28-1) ... 142s Setting up r-cran-rpart (4.1.23-1) ... 142s Setting up r-cran-ipred (0.9-14-1) ... 142s Setting up autopkgtest-satdep (0) ... 142s Processing triggers for man-db (2.12.0-3) ... 143s Processing triggers for install-info (7.1-3) ... 143s Processing triggers for libc-bin (2.39-0ubuntu2) ... 149s (Reading database ... 79308 files and directories currently installed.) 149s Removing autopkgtest-satdep (0) ... 150s autopkgtest [18:53:23]: test run-unit-test: [----------------------- 150s BEGIN TEST ipred-bugs.R 150s 150s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 150s Copyright (C) 2024 The R Foundation for Statistical Computing 150s Platform: aarch64-unknown-linux-gnu (64-bit) 150s 150s R is free software and comes with ABSOLUTELY NO WARRANTY. 150s You are welcome to redistribute it under certain conditions. 150s Type 'license()' or 'licence()' for distribution details. 150s 150s R is a collaborative project with many contributors. 150s Type 'contributors()' for more information and 150s 'citation()' on how to cite R or R packages in publications. 150s 150s Type 'demo()' for some demos, 'help()' for on-line help, or 150s 'help.start()' for an HTML browser interface to help. 150s Type 'q()' to quit R. 150s 150s > library(ipred) 152s > 152s > suppressWarnings(RNGversion("3.5.3")) 152s > actversion <- paste(R.version$major, R.version$minor, sep=".") 152s > thisversion <- "1.7.0" 152s > 152s > #if (compareVersion(actversion, thisversion) >= 0) { 152s > # RNGversion("1.6.2") 152s > #} 152s > set.seed(29081975) 152s > 152s > data("BreastCancer", package = "mlbench") 152s > mod <- bagging(Class ~ Cl.thickness + Cell.size 152s + + Cell.shape + Marg.adhesion 152s + + Epith.c.size + Bare.nuclei 152s + + Bl.cromatin + Normal.nucleoli 152s + + Mitoses, data=BreastCancer, coob=TRUE) 152s > print(mod) 152s 152s Bagging classification trees with 25 bootstrap replications 152s 152s Call: bagging.data.frame(formula = Class ~ Cl.thickness + Cell.size + 152s Cell.shape + Marg.adhesion + Epith.c.size + Bare.nuclei + 152s Bl.cromatin + Normal.nucleoli + Mitoses, data = BreastCancer, 152s coob = TRUE) 152s 152s Out-of-bag estimate of misclassification error: 0.0439 152s 152s > 152s > print(a <- predict(mod, newdata=BreastCancer)) 152s [1] benign benign benign malignant benign malignant benign 152s [8] benign benign benign benign benign malignant benign 152s [15] malignant malignant benign benign malignant benign malignant 152s [22] malignant benign malignant benign malignant benign benign 152s [29] benign benign benign benign malignant benign benign 152s [36] benign malignant benign malignant malignant malignant malignant 152s [43] malignant malignant malignant benign malignant benign benign 152s [50] malignant malignant malignant malignant malignant malignant malignant 152s [57] malignant malignant malignant malignant malignant benign malignant 152s [64] malignant benign malignant benign malignant malignant benign 152s [71] benign malignant benign malignant malignant benign benign 152s [78] benign benign benign benign benign benign benign 152s [85] malignant malignant malignant malignant benign benign benign 152s [92] benign benign benign benign benign benign benign 152s [99] malignant malignant malignant malignant benign malignant malignant 152s [106] malignant malignant malignant benign malignant benign malignant 152s [113] malignant malignant benign benign benign malignant benign 152s [120] benign benign benign malignant malignant malignant benign 152s [127] malignant benign malignant benign benign benign malignant 152s [134] benign benign benign benign benign benign benign 152s [141] benign benign malignant benign benign benign malignant 152s [148] benign benign malignant benign malignant malignant benign 152s [155] benign malignant benign benign benign malignant malignant 152s [162] benign benign benign benign benign malignant malignant 152s [169] benign benign benign benign benign malignant malignant 152s [176] malignant benign malignant benign malignant benign benign 152s [183] benign malignant malignant benign malignant malignant malignant 152s [190] benign malignant malignant benign benign benign benign 152s [197] benign benign benign benign malignant malignant benign 152s [204] benign benign malignant malignant benign benign benign 152s [211] malignant malignant benign malignant malignant malignant benign 152s [218] benign malignant benign benign malignant malignant malignant 152s [225] malignant benign malignant malignant benign malignant malignant 152s [232] malignant benign malignant benign benign malignant malignant 152s [239] malignant malignant benign benign benign benign benign 152s [246] benign malignant malignant benign benign benign malignant 152s [253] benign malignant malignant malignant benign benign benign 152s [260] benign malignant malignant malignant malignant malignant benign 152s [267] malignant malignant malignant benign malignant benign malignant 152s [274] malignant benign benign benign benign benign malignant 152s [281] benign benign malignant malignant malignant malignant malignant 152s [288] benign malignant malignant benign benign malignant malignant 152s [295] benign malignant benign benign benign malignant malignant 152s [302] benign malignant benign malignant malignant benign benign 152s [309] malignant benign benign benign malignant benign benign 152s [316] malignant malignant malignant benign benign malignant benign 152s [323] benign malignant benign benign malignant benign malignant 152s [330] malignant malignant benign benign malignant malignant benign 152s [337] malignant benign benign malignant malignant benign benign 152s [344] benign malignant benign benign benign malignant malignant 152s [351] benign benign benign malignant benign benign malignant 152s [358] malignant malignant malignant malignant malignant benign benign 152s [365] benign benign malignant malignant benign benign benign 152s [372] benign benign benign benign benign benign benign 152s [379] benign benign benign malignant benign benign benign 152s [386] benign malignant benign benign benign benign malignant 152s [393] benign benign benign benign benign benign benign 152s [400] benign malignant benign benign benign benign benign 152s [407] benign benign benign benign benign benign malignant 152s [414] benign malignant benign malignant benign benign benign 152s [421] benign malignant benign benign benign malignant benign 152s [428] malignant benign benign benign benign benign benign 152s [435] benign malignant malignant benign benign benign malignant 152s [442] benign benign benign benign benign benign benign 152s [449] benign malignant benign benign benign malignant benign 152s [456] malignant malignant malignant benign benign benign benign 152s [463] benign benign benign malignant malignant malignant benign 152s [470] benign benign benign benign benign benign benign 152s [477] benign benign benign malignant benign benign malignant 152s [484] malignant benign benign benign malignant malignant malignant 152s [491] benign malignant benign malignant benign benign benign 152s [498] benign benign benign benign benign benign benign 152s [505] benign benign malignant benign benign benign benign 152s [512] benign benign benign malignant malignant benign benign 152s [519] benign malignant benign benign malignant malignant benign 152s [526] benign benign benign benign benign malignant benign 152s [533] benign benign benign benign benign benign benign 152s [540] benign benign benign benign benign benign benign 152s [547] malignant benign benign malignant benign benign benign 152s [554] benign benign benign benign benign benign benign 152s [561] benign benign benign benign benign malignant benign 152s [568] benign malignant malignant malignant malignant benign benign 152s [575] malignant benign benign benign benign benign benign 152s [582] malignant malignant benign benign benign malignant benign 152s [589] malignant benign malignant malignant malignant benign malignant 152s [596] benign benign benign benign benign benign benign 152s [603] benign malignant malignant malignant benign benign malignant 152s [610] benign malignant malignant malignant benign benign benign 152s [617] benign benign benign benign benign benign benign 152s [624] benign benign benign malignant benign benign benign 152s [631] benign benign benign malignant benign benign malignant 152s [638] benign benign benign benign benign benign benign 152s [645] benign benign benign benign malignant benign benign 152s [652] benign benign benign benign benign benign benign 152s [659] malignant benign benign benign benign benign benign 152s [666] benign benign benign malignant malignant malignant benign 152s [673] benign benign benign benign benign benign benign 152s [680] benign malignant malignant benign benign benign benign 152s [687] benign benign benign benign benign malignant benign 152s [694] benign benign benign malignant malignant malignant 152s Levels: benign malignant 152s > stopifnot(length(a) == nrow(BreastCancer)) 152s > 152s > # bagging failed if only one predictor was specified 152s > # by Christoph M. Friedrich , April 29th, 2002 152s > 152s > X <- as.data.frame(matrix(rnorm(1000), ncol=10)) 152s > y <- factor(ifelse(apply(X, 1, mean) > 0, 1, 0)) 152s > learn <- cbind(y, X) 152s > mt <- bagging(y ~ V1, data=learn, coob=TRUE) 152s > # 152s > # This won't work because of some difficulties with predict.lda 152s > # mt <- bagging(y ~ V1, data=learn, method="double", coob=FALSE) 152s > # 152s > X <- as.data.frame(matrix(rnorm(1000), ncol=10)) 152s > y <- apply(X, 1, mean) + rnorm(nrow(X)) 152s > learn <- cbind(y, X) 152s > mt <- bagging(y ~ V1, data=learn, coob=TRUE) 152s > 152s > # cv.numeric and bootest.numeric were broken, check for reasonaly values 152s > X <- as.data.frame(matrix(rnorm(1000), ncol=10)) 152s > y <- apply(X, 1, mean) + rnorm(nrow(X)) 152s > learn <- cbind(y, X) 152s > newy <- apply(X, 1, mean) + rnorm(nrow(X)) 152s > mod <- lm(y ~ ., data=learn) 152s > trueerr <- sqrt(mean((newy - fitted(mod))^2)) 152s > cverr <- rep(0,5) 152s > for (i in 1:5) cverr[i] <- errorest(y ~., data=learn, model=lm)$error 152s > booterr <- errorest(y ~., data=learn, model=lm, 152s + estimator="boot",est.para=control.errorest(nboot=50))$error 152s > print(trueerr/mean(cverr)) 152s [1] 0.9612632 152s > print(trueerr/booterr) 152s [1] 0.9073771 152s > 152s BEGIN TEST ipred-segfault.R 152s 152s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 152s Copyright (C) 2024 The R Foundation for Statistical Computing 152s Platform: aarch64-unknown-linux-gnu (64-bit) 152s 152s R is free software and comes with ABSOLUTELY NO WARRANTY. 152s You are welcome to redistribute it under certain conditions. 152s Type 'license()' or 'licence()' for distribution details. 152s 152s R is a collaborative project with many contributors. 152s Type 'contributors()' for more information and 152s 'citation()' on how to cite R or R packages in publications. 152s 152s Type 'demo()' for some demos, 'help()' for on-line help, or 152s 'help.start()' for an HTML browser interface to help. 152s Type 'q()' to quit R. 152s 152s > library("ipred") 154s > library("mlbench") 154s > library("MASS") 154s > library("survival") 154s > 154s > suppressWarnings(RNGversion("3.5.3")) 154s > 154s > actversion <- paste(R.version$major, R.version$minor, sep=".") 154s > thisversion <- "1.7.0" 154s > 154s > #if (compareVersion(actversion, thisversion) >= 0) { 154s > # RNGversion("1.6.2") 154s > #} 154s > set.seed(29081975) 154s > 154s > 154s > # Classification 154s > 154s > learn <- as.data.frame(mlbench.twonorm(200)) 154s > test <- as.data.frame(mlbench.twonorm(100)) 154s > 154s > # bagging 154s > 154s > mod <- bagging(classes ~ ., data=learn, coob=TRUE, nbagg=10) 154s > mod 154s 154s Bagging classification trees with 10 bootstrap replications 154s 154s Call: bagging.data.frame(formula = classes ~ ., data = learn, coob = TRUE, 154s nbagg = 10) 154s 154s Out-of-bag estimate of misclassification error: 0.195 154s 154s > predict(mod)[1:10] 154s [1] 1 1 1 2 2 2 1 1 1 1 154s Levels: 1 2 154s > 154s > # Double-Bagging 154s > 154s > comb.lda <- list(list(model=lda, predict=function(obj, newdata) 154s + predict(obj, newdata)$x)) 154s > 154s > mod <- bagging(classes ~ ., data=learn, comb=comb.lda, nbagg=10) 154s > mod 154s 154s Bagging classification trees with 10 bootstrap replications 154s 154s Call: bagging.data.frame(formula = classes ~ ., data = learn, comb = comb.lda, 154s nbagg = 10) 154s 154s 154s > predict(mod, newdata=test[1:10,]) 154s [1] 1 1 1 1 1 2 1 2 1 2 154s Levels: 1 2 154s > predict(mod, newdata=test[1:10,], agg="aver") 154s [1] 1 1 1 1 2 2 1 2 1 2 154s Levels: 1 2 154s > predict(mod, newdata=test[1:10,], agg="wei") 154s [1] 1 1 1 1 2 2 1 2 1 2 154s Levels: 1 2 154s > predict(mod, newdata=test[1:10,], type="prob") 154s 1 2 154s [1,] 1.0 0.0 154s [2,] 0.9 0.1 154s [3,] 1.0 0.0 154s [4,] 1.0 0.0 154s [5,] 0.5 0.5 154s [6,] 0.0 1.0 154s [7,] 1.0 0.0 154s [8,] 0.1 0.9 154s [9,] 1.0 0.0 154s [10,] 0.0 1.0 154s > predict(mod, newdata=test[1:10,], type="prob", agg="aver") 154s 1 2 154s [1,] 1.0 0.0 154s [2,] 0.9 0.1 154s [3,] 1.0 0.0 154s [4,] 1.0 0.0 154s [5,] 0.5 0.5 154s [6,] 0.0 1.0 154s [7,] 1.0 0.0 154s [8,] 0.1 0.9 154s [9,] 1.0 0.0 154s [10,] 0.0 1.0 154s > predict(mod, newdata=test[1:10,], type="prob", agg="wei") 154s 1 2 154s [1,] 1.000000000 0.000000000 154s [2,] 0.996441281 0.003558719 154s [3,] 1.000000000 0.000000000 154s [4,] 1.000000000 0.000000000 154s [5,] 0.484359233 0.515640767 154s [6,] 0.000000000 1.000000000 154s [7,] 1.000000000 0.000000000 154s [8,] 0.001138952 0.998861048 154s [9,] 1.000000000 0.000000000 154s [10,] 0.000000000 1.000000000 154s > 154s > mypredict.lda <- function(object, newdata) 154s + predict(object, newdata = newdata)$class 154s > 154s > errorest(classes ~ ., data=learn, model=lda, predict=mypredict.lda) 154s 154s Call: 154s errorest.data.frame(formula = classes ~ ., data = learn, model = lda, 154s predict = mypredict.lda) 154s 154s 10-fold cross-validation estimator of misclassification error 154s 154s Misclassification error: 0.035 154s 154s > errorest(classes ~ ., data=learn, model=lda, predict=mypredict.lda, 154s + est.para=control.errorest(k=5, random=FALSE)) 154s 154s Call: 154s errorest.data.frame(formula = classes ~ ., data = learn, model = lda, 154s predict = mypredict.lda, est.para = control.errorest(k = 5, 154s random = FALSE)) 154s 154s 5-fold cross-validation estimator of misclassification error 154s 154s Misclassification error: 0.04 154s 154s > 154s > lapply(errorest(classes ~ ., data=learn, model=lda, predict=mypredict.lda, 154s + est.para=control.errorest(k=5, random=FALSE, getmodels=TRUE))$models, class) 154s [[1]] 154s [1] "lda" 154s 154s [[2]] 154s [1] "lda" 154s 154s [[3]] 154s [1] "lda" 154s 154s [[4]] 154s [1] "lda" 154s 154s [[5]] 154s [1] "lda" 154s 154s > errorest(classes ~ ., data=learn, model=bagging, 154s + est.para=control.errorest(k=2), nbagg=10) 154s 154s Call: 154s errorest.data.frame(formula = classes ~ ., data = learn, model = bagging, 154s est.para = control.errorest(k = 2), nbagg = 10) 154s 154s 2-fold cross-validation estimator of misclassification error 154s 154s Misclassification error: 0.12 154s 154s > errorest(classes ~ ., data=learn, model=bagging, 154s + est.para=control.errorest(k=2), nbagg=10, comb=comb.lda) 155s 155s Call: 155s errorest.data.frame(formula = classes ~ ., data = learn, model = bagging, 155s est.para = control.errorest(k = 2), nbagg = 10, comb = comb.lda) 155s 155s 2-fold cross-validation estimator of misclassification error 155s 155s Misclassification error: 0.055 155s 155s > errorest(classes ~ ., data=learn, model=lda, 155s + predict=mypredict.lda, estimator="boot") 155s 155s Call: 155s errorest.data.frame(formula = classes ~ ., data = learn, model = lda, 155s predict = mypredict.lda, estimator = "boot") 155s 155s Bootstrap estimator of misclassification error 155s with 25 bootstrap replications 155s 155s Misclassification error: 0.038 155s Standard deviation: 0.0023 155s 155s > errorest(classes ~ ., data=learn, model=lda, 155s + predict=mypredict.lda, estimator="632plus") 155s 155s Call: 155s errorest.data.frame(formula = classes ~ ., data = learn, model = lda, 155s predict = mypredict.lda, estimator = "632plus") 155s 155s .632+ Bootstrap estimator of misclassification error 155s with 25 bootstrap replications 155s 155s Misclassification error: 0.0336 155s 155s > 155s > # Regression 155s > 155s > learn <- as.data.frame(mlbench.friedman1(100)) 155s > test <- as.data.frame(mlbench.friedman1(100)) 155s > 155s > # bagging 155s > 155s > mod <- bagging(y ~ ., data=learn, coob=TRUE, nbagg=10) 155s > mod 155s 155s Bagging regression trees with 10 bootstrap replications 155s 155s Call: bagging.data.frame(formula = y ~ ., data = learn, coob = TRUE, 155s nbagg = 10) 155s 155s Out-of-bag estimate of root mean squared error: 3.0773 155s 155s > predict(mod)[1:10] 155s [1] 13.367299 15.465575 10.728200 21.426540 16.379882 16.992572 NA 155s [8] 12.899667 8.096002 16.070858 155s > 155s > predict(mod, newdata=test[1:10,]) 155s [1] 13.90686 14.94293 12.94732 11.67369 16.63664 14.42252 16.01717 12.34594 155s [9] 11.96764 22.14124 155s > predict(mod, newdata=test[1:10,], agg="aver") 155s [1] 13.90686 14.94293 12.94732 11.67369 16.63664 14.42252 16.01717 12.34594 155s [9] 11.96764 22.14124 155s > predict(mod, newdata=test[1:10,], agg="wei") 155s [1] 13.96527 14.95040 12.92685 11.61045 16.74963 14.59937 16.46226 12.44494 155s [9] 12.20556 22.00779 155s > errorest(y ~ ., data=learn, model=lm) 155s 155s Call: 155s errorest.data.frame(formula = y ~ ., data = learn, model = lm) 155s 155s 10-fold cross-validation estimator of root mean squared error 155s 155s Root mean squared error: 2.7385 155s 155s > errorest(y ~ ., data=learn, model=lm, 155s + est.para=control.errorest(k=5, random=FALSE)) 155s 155s Call: 155s errorest.data.frame(formula = y ~ ., data = learn, model = lm, 155s est.para = control.errorest(k = 5, random = FALSE)) 155s 155s 5-fold cross-validation estimator of root mean squared error 155s 155s Root mean squared error: 2.7941 155s 155s > lapply(errorest(y ~ ., data=learn, model=lm, 155s + est.para=control.errorest(k=5, random=FALSE, getmodels=TRUE))$models, class) 155s [[1]] 155s [1] "lm" 155s 155s [[2]] 155s [1] "lm" 155s 155s [[3]] 155s [1] "lm" 155s 155s [[4]] 155s [1] "lm" 155s 155s [[5]] 155s [1] "lm" 155s 155s > errorest(y ~ ., data=learn, model=lm, estimator="boot") 155s 155s Call: 155s errorest.data.frame(formula = y ~ ., data = learn, model = lm, 155s estimator = "boot") 155s 155s Bootstrap estimator of root mean squared error 155s with 25 bootstrap replications 155s 155s Root mean squared error: 2.7966 155s 155s > 155s > # survival 155s > 155s > learn <- rsurv(100, model="C") 155s > test <- rsurv(100, model="C") 155s > 155s > mod <- bagging(Surv(time, cens) ~ ., data=learn, nbagg=10) 156s > mod 156s 156s Bagging survival trees with 10 bootstrap replications 156s 156s Call: bagging.data.frame(formula = Surv(time, cens) ~ ., data = learn, 156s nbagg = 10) 156s 156s 156s > predict(mod, newdata=test[1:10,]) 156s [[1]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 117 117 0.0751 0.064 0.123 156s 156s [[2]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 134 134 0.028 0.0247 0.0321 156s 156s [[3]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 142 142 0.215 0.179 0.241 156s 156s [[4]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 131 131 0.0216 0.0205 0.028 156s 156s [[5]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 145 145 0.217 0.168 0.251 156s 156s [[6]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 105 105 0.0476 0.0421 0.0496 156s 156s [[7]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 125 125 0.181 0.156 0.218 156s 156s [[8]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 139 139 0.179 0.156 0.217 156s 156s [[9]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 131 131 0.181 0.179 0.251 156s 156s [[10]] 156s Call: survfit(formula = Surv(agglsample[[j]], aggcens[[j]]) ~ 1) 156s 156s n events median 0.95LCL 0.95UCL 156s [1,] 120 120 0.028 0.0247 0.0395 156s 156s > 156s > #errorest(Surv(time, cens) ~ ., data=learn, model=bagging, 156s > # est.para=list(k=2, random=FALSE), nbagg=5) 156s > #errorest(Surv(time, cens) ~ ., data=learn, model=bagging, 156s > # estimator="boot", nbagg=5, est.para=list(nboot=5)) 156s > #insert control.errorest 156s > errorest(Surv(time, cens) ~ ., data=learn, model=bagging, 156s + est.para=control.errorest(k=2, random=FALSE), nbagg=5) 156s 156s Call: 156s errorest.data.frame(formula = Surv(time, cens) ~ ., data = learn, 156s model = bagging, est.para = control.errorest(k = 2, random = FALSE), 156s nbagg = 5) 156s 156s 2-fold cross-validation estimator of Brier's score 156s 156s Brier's score: 0.0874 156s 156s > errorest(Surv(time, cens) ~ ., data=learn, model=bagging, 156s + estimator="boot", nbagg=5, est.para=control.errorest(nboot=5)) 156s 156s Call: 156s errorest.data.frame(formula = Surv(time, cens) ~ ., data = learn, 156s model = bagging, estimator = "boot", est.para = control.errorest(nboot = 5), 156s nbagg = 5) 156s 156s Bootstrap estimator of Brier's score 156s with 5 bootstrap replications 156s 156s Brier's score: 0.0956 156s 156s > 156s > #lapply(errorest(Surv(time, cens) ~ ., data=learn, model=bagging, 156s > # estimator="cv", nbagg=1, est.para=list(k=2, random=FALSE, 156s > # getmodels=TRUE))$models, class) 156s > #insert control.errorest 156s > lapply(errorest(Surv(time, cens) ~ ., data=learn, model=bagging, 156s + estimator="cv", nbagg=1, est.para=control.errorest(k=2, random=FALSE, 156s + getmodels=TRUE))$models, class) 156s [[1]] 156s [1] "survbagg" 156s 156s [[2]] 156s [1] "survbagg" 156s 156s > 156s > # bundling for regression 156s > 156s > learn <- as.data.frame(mlbench.friedman1(100)) 156s > test <- as.data.frame(mlbench.friedman1(100)) 156s > 156s > comb <- list(list(model=lm, predict=predict.lm)) 156s > 156s > modc <- bagging(y ~ ., data=learn, nbagg=10, comb=comb) 156s > modc 156s 156s Bagging regression trees with 10 bootstrap replications 156s 156s Call: bagging.data.frame(formula = y ~ ., data = learn, nbagg = 10, 156s comb = comb) 156s 156s 156s > predict(modc, newdata=learn)[1:10] 156s [1] 7.192725 20.401036 7.607863 14.909765 15.721930 8.544955 16.968957 156s [8] 16.818052 12.692932 14.218597 156s > 156s > # bundling for survival 156s > 156s > while(FALSE) { 156s + data("GBSG2", package = "ipred") 156s + rcomb <- list(list(model=coxph, predict=predict)) 156s + 156s + mods <- bagging(Surv(time,cens) ~ ., data=GBSG2, nbagg=10, 156s + comb=rcomb, control=rpart.control(xval=0)) 156s + predict(mods, newdata=GBSG2[1:3,]) 156s + 156s + # test for method dispatch on integer valued responses 156s + y <- sample(1:100, 100) 156s + class(y) 156s + x <- matrix(rnorm(100*5), ncol=5) 156s + mydata <- as.data.frame(cbind(y, x)) 156s + 156s + cv(y, y ~ ., data=mydata, model=lm, predict=predict) 156s + bootest(y, y ~ ., data=mydata, model=lm, predict=predict) 156s + bagging(y ~., data=mydata, nbagg=10) 156s + } 156s > 156s BEGIN TEST ipred-smalltest.R 156s 156s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 156s Copyright (C) 2024 The R Foundation for Statistical Computing 156s Platform: aarch64-unknown-linux-gnu (64-bit) 156s 156s R is free software and comes with ABSOLUTELY NO WARRANTY. 156s You are welcome to redistribute it under certain conditions. 156s Type 'license()' or 'licence()' for distribution details. 156s 156s R is a collaborative project with many contributors. 156s Type 'contributors()' for more information and 156s 'citation()' on how to cite R or R packages in publications. 156s 156s Type 'demo()' for some demos, 'help()' for on-line help, or 156s 'help.start()' for an HTML browser interface to help. 156s Type 'q()' to quit R. 156s 157s > 157s > library(ipred) 158s > suppressWarnings(RNGversion("3.5.3")) 158s > 158s > # check if SdiffKM computes 158s > # 158s > # int_start^stop (exp(-h*t) - c)^2 dt 158s > # 158s > # in the correct way 158s > 158s > # low-level interface needed 158s > myfoo <- function(times, prob, h, window=0.0001) { 158s + .Call("SdiffKM", as.double(c(0, times)), 158s + as.double(c(prob[1], prob)), as.double(c(h, 158s + window)), PACKAGE = "ipred") 158s + } 158s > 158s > # to compare with 158s > mexp <- function(start, stop, haz, c=0) { 158s + foo <- function(t) 158s + exp(-2*haz*t)/(-2*haz) - 2*c*exp(-haz*t)/(-haz) + c^2*t 158s + foo(stop) - foo(start) 158s + } 158s > 158s > 158s > times <- seq(from=0.01, to=8, by=0.01) 158s > 158s > for (myc in c(0,0.5,0.9)) { 158s + for (h in c(1,2,3)) { 158s + prob <- rep(myc, length(times)) 158s + a <- round(mexp(0, max(times), h, c=myc),7) 158s + b <- round(myfoo(times, prob, h), 7) 158s + stopifnot(all.equal(a,b)) 158s + } 158s + } 158s > 158s autopkgtest [18:53:31]: test run-unit-test: -----------------------] 159s run-unit-test PASS 159s autopkgtest [18:53:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 159s autopkgtest [18:53:32]: test pkg-r-autopkgtest: preparing testbed 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 161s Starting pkgProblemResolver with broken count: 0 161s Starting 2 pkgProblemResolver with broken count: 0 161s Done 161s The following additional packages will be installed: 161s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 161s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 161s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 161s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 161s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 161s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 161s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 161s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 161s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 161s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 161s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-coin r-cran-libcoin 161s r-cran-matrixstats r-cran-modeltools r-cran-multcomp r-cran-mvtnorm 161s r-cran-party r-cran-randomforest r-cran-sandwich r-cran-strucchange 161s r-cran-th.data r-cran-zoo rpcsvc-proto zlib1g-dev 162s Suggested packages: 162s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 162s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 162s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 162s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 162s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 162s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 162s texlive-latex-recommended texlive-latex-extra texinfo r-cran-rcolorbrewer 162s Recommended packages: 162s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-cran-xtable 162s r-cran-e1071 r-cran-vcd r-cran-base64enc r-cran-ggplot2 r-cran-knitr 162s r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-colorspace 162s The following NEW packages will be installed: 162s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 162s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 162s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 162s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 162s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 162s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 162s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 162s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 162s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 162s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 162s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 162s pkgconf pkgconf-bin r-base-dev r-cran-coin r-cran-libcoin r-cran-matrixstats 162s r-cran-modeltools r-cran-multcomp r-cran-mvtnorm r-cran-party 162s r-cran-randomforest r-cran-sandwich r-cran-strucchange r-cran-th.data 162s r-cran-zoo rpcsvc-proto zlib1g-dev 162s 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 111 MB/111 MB of archives. 162s After this operation, 366 MB of additional disk space will be used. 162s Get:1 /tmp/autopkgtest.Kj1Evr/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 162s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 162s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 162s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 162s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 162s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 162s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 162s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 162s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 162s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 162s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 163s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 163s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 163s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 163s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 163s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 163s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 163s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 163s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 163s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 163s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 163s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 163s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 163s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 164s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 164s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 164s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 164s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 164s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 164s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 164s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 164s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 164s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 164s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 164s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 164s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 164s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 164s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 164s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 164s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 164s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 164s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 164s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 164s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 164s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 164s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 164s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 165s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 165s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 165s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 165s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 165s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 165s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 165s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 165s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 165s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 165s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 165s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 165s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 165s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 165s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 165s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 165s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mvtnorm arm64 1.2-4-1 [723 kB] 165s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-libcoin arm64 1.0-10-1 [766 kB] 165s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 165s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modeltools all 0.2-23-2build1 [219 kB] 165s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-th.data all 1.1-2-2 [8794 kB] 165s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 165s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sandwich all 3.1-0-1 [1484 kB] 165s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-multcomp all 1.4-25-1 [709 kB] 165s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-coin arm64 1.4-3-1 [1559 kB] 165s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-strucchange arm64 1.5-3-1 [927 kB] 165s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-party arm64 1.3-14-1 [1136 kB] 165s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-randomforest arm64 4.7-1.1-1 [214 kB] 166s Fetched 111 MB in 4s (31.6 MB/s) 166s Selecting previously unselected package libc-dev-bin. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79308 files and directories currently installed.) 166s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 166s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 166s Selecting previously unselected package linux-libc-dev:arm64. 166s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 166s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 166s Selecting previously unselected package libcrypt-dev:arm64. 166s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 166s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 166s Selecting previously unselected package libtirpc-dev:arm64. 166s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 166s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 166s Selecting previously unselected package libnsl-dev:arm64. 166s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ... 166s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 166s Selecting previously unselected package rpcsvc-proto. 166s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 166s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 166s Selecting previously unselected package libc6-dev:arm64. 167s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ... 167s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 167s Selecting previously unselected package libisl23:arm64. 167s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ... 167s Unpacking libisl23:arm64 (0.26-3) ... 167s Selecting previously unselected package libmpc3:arm64. 167s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 167s Unpacking libmpc3:arm64 (1.3.1-1) ... 167s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 167s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 167s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 167s Selecting previously unselected package cpp-13. 167s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 167s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 167s Selecting previously unselected package cpp-aarch64-linux-gnu. 167s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 167s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 167s Selecting previously unselected package cpp. 167s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 167s Unpacking cpp (4:13.2.0-7ubuntu1) ... 167s Selecting previously unselected package libcc1-0:arm64. 167s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 167s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 167s Selecting previously unselected package libitm1:arm64. 167s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ... 167s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 167s Selecting previously unselected package libatomic1:arm64. 167s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 167s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 167s Selecting previously unselected package libasan8:arm64. 168s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package liblsan0:arm64. 168s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package libtsan2:arm64. 168s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package libubsan1:arm64. 168s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package libhwasan0:arm64. 168s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package libgcc-13-dev:arm64. 168s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 168s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 168s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 168s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 168s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 168s Selecting previously unselected package gcc-13. 168s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 168s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package gcc-aarch64-linux-gnu. 169s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 169s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 169s Selecting previously unselected package gcc. 169s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 169s Unpacking gcc (4:13.2.0-7ubuntu1) ... 169s Selecting previously unselected package libstdc++-13-dev:arm64. 169s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 169s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package g++-13-aarch64-linux-gnu. 169s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 169s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package g++-13. 169s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 169s Unpacking g++-13 (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package g++-aarch64-linux-gnu. 169s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 169s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 169s Selecting previously unselected package g++. 169s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 169s Unpacking g++ (4:13.2.0-7ubuntu1) ... 169s Selecting previously unselected package build-essential. 169s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 169s Unpacking build-essential (12.10ubuntu1) ... 169s Selecting previously unselected package dctrl-tools. 169s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 169s Unpacking dctrl-tools (2.24-3build2) ... 169s Selecting previously unselected package libgfortran-13-dev:arm64. 169s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 169s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 169s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 169s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package gfortran-13. 169s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 169s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 169s Selecting previously unselected package gfortran-aarch64-linux-gnu. 170s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 170s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 170s Selecting previously unselected package gfortran. 170s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 170s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 170s Selecting previously unselected package icu-devtools. 170s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 170s Unpacking icu-devtools (74.2-1ubuntu1) ... 170s Selecting previously unselected package libblas-dev:arm64. 170s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 170s Unpacking libblas-dev:arm64 (3.12.0-3) ... 170s Selecting previously unselected package libbz2-dev:arm64. 170s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 170s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 170s Selecting previously unselected package libicu-dev:arm64. 170s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 170s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 170s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 170s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 170s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 170s Selecting previously unselected package libjpeg8-dev:arm64. 170s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 170s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 170s Selecting previously unselected package libjpeg-dev:arm64. 170s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 170s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 170s Selecting previously unselected package liblapack-dev:arm64. 170s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 170s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 170s Selecting previously unselected package libncurses-dev:arm64. 170s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 170s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 170s Selecting previously unselected package libpcre2-16-0:arm64. 170s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 170s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpcre2-32-0:arm64. 170s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 170s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpcre2-posix3:arm64. 170s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 170s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpcre2-dev:arm64. 170s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 170s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpkgconf3:arm64. 170s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ... 170s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 170s Selecting previously unselected package zlib1g-dev:arm64. 170s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 170s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 170s Selecting previously unselected package libpng-dev:arm64. 170s Preparing to unpack .../53-libpng-dev_1.6.43-3_arm64.deb ... 170s Unpacking libpng-dev:arm64 (1.6.43-3) ... 171s 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 172s Setting up g++ (4:13.2.0-7ubuntu1) ... 172s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 172s Setting up build-essential (12.10ubuntu1) ... 172s Setting up r-base-dev (4.3.3-2build1) ... 172s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 172s Setting up autopkgtest-satdep (0) ... 172s Processing triggers for man-db (2.12.0-3) ... 172s Processing triggers for install-info (7.1-3) ... 172s Processing triggers for libc-bin (2.39-0ubuntu2) ... 176s (Reading database ... 83728 files and directories currently installed.) 176s Removing autopkgtest-satdep (0) ... 177s autopkgtest [18:53:50]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 177s autopkgtest [18:53:50]: test pkg-r-autopkgtest: [----------------------- 177s Test: Try to load the R library ipred 177s 177s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 177s Copyright (C) 2024 The R Foundation for Statistical Computing 177s Platform: aarch64-unknown-linux-gnu (64-bit) 177s 177s R is free software and comes with ABSOLUTELY NO WARRANTY. 177s You are welcome to redistribute it under certain conditions. 177s Type 'license()' or 'licence()' for distribution details. 177s 177s R is a collaborative project with many contributors. 177s Type 'contributors()' for more information and 177s 'citation()' on how to cite R or R packages in publications. 177s 177s Type 'demo()' for some demos, 'help()' for on-line help, or 177s 'help.start()' for an HTML browser interface to help. 177s Type 'q()' to quit R. 177s 178s > library('ipred') 179s > 179s > 179s Other tests are currently unsupported! 179s They will be progressively added. 179s autopkgtest [18:53:52]: test pkg-r-autopkgtest: -----------------------] 180s pkg-r-autopkgtest PASS 180s autopkgtest [18:53:53]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 180s autopkgtest [18:53:53]: @@@@@@@@@@@@@@@@@@@@ summary 180s run-unit-test PASS 180s pkg-r-autopkgtest PASS 191s Creating nova instance adt-noble-arm64-r-cran-ipred-20240316-185053-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...