0s autopkgtest [18:45:57]: starting date and time: 2024-03-16 18:45:57+0000
  0s autopkgtest [18:45:57]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [18:45:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m8uht0ab/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-gunifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-12.secgroup --name adt-noble-arm64-r-cran-gunifrac-20240316-184557-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
105s autopkgtest [18:47:42]: testbed dpkg architecture: arm64
105s autopkgtest [18:47:42]: testbed apt version: 2.7.12
105s autopkgtest [18:47:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup
106s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
107s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB]
107s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
107s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
107s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB]
107s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
107s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
107s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
107s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
108s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB]
108s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
108s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB]
108s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
115s Fetched 9084 kB in 4s (2558 kB/s)
116s Reading package lists...
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
124s Calculating upgrade...
125s The following packages will be REMOVED:
125s   libglib2.0-0 libssl3
125s The following NEW packages will be installed:
125s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
125s The following packages have been kept back:
125s   curl
125s The following packages will be upgraded:
125s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
125s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
125s Need to get 4592 kB of archives.
125s After this operation, 211 kB of additional disk space will be used.
125s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
126s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
126s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
126s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
126s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
126s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
126s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
126s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
127s Fetched 4592 kB in 1s (5171 kB/s)
127s (Reading database ... 
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(Reading database ... 75850 files and directories currently installed.)
128s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
128s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
128s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
128s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
128s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
128s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
128s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
128s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
128s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
128s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
128s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
128s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
128s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
128s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
128s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
128s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
128s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
128s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
128s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
128s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
128s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
128s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
128s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
128s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
128s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
128s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
128s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
128s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
128s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
128s  fwupd depends on libglib2.0-0 (>= 2.79.0).
128s  bolt depends on libglib2.0-0 (>= 2.56.0).
128s 
128s (Reading database ... 
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128s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
128s Selecting previously unselected package libglib2.0-0t64:arm64.
128s (Reading database ... 
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128s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
128s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
128s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
128s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
128s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
128s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
129s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
129s  wget depends on libssl3 (>= 3.0.0).
129s  u-boot-tools depends on libssl3 (>= 3.0.0).
129s  tnftp depends on libssl3 (>= 3.0.0).
129s  tcpdump depends on libssl3 (>= 3.0.0).
129s  systemd-resolved depends on libssl3 (>= 3.0.0).
129s  systemd depends on libssl3 (>= 3.0.0).
129s  sudo depends on libssl3 (>= 3.0.0).
129s  sbsigntool depends on libssl3 (>= 3.0.0).
129s  rsync depends on libssl3 (>= 3.0.0).
129s  python3-cryptography depends on libssl3 (>= 3.0.0).
129s  openssh-server depends on libssl3 (>= 3.0.10).
129s  openssh-client depends on libssl3 (>= 3.0.10).
129s  mtd-utils depends on libssl3 (>= 3.0.0).
129s  mokutil depends on libssl3 (>= 3.0.0).
129s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
129s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
129s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
129s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
129s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
129s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
129s  libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0).
129s  libnvme1 depends on libssl3 (>= 3.0.0).
129s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
129s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
129s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
129s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
129s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
129s  kmod depends on libssl3 (>= 3.0.0).
129s  dhcpcd-base depends on libssl3 (>= 3.0.0).
129s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
129s 
129s (Reading database ... 
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129s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
129s Selecting previously unselected package libssl3t64:arm64.
129s (Reading database ... 
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(Reading database ... 75839 files and directories currently installed.)
129s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
129s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
129s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
129s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
129s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
129s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
129s Preparing to unpack .../readline-common_8.2-3.1_all.deb ...
129s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
129s Selecting previously unselected package xdg-user-dirs.
129s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ...
129s Unpacking xdg-user-dirs (0.18-1) ...
130s Setting up xdg-user-dirs (0.18-1) ...
130s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
130s Setting up libtirpc-common (1.3.4+ds-1.1) ...
130s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
130s No schema files found: doing nothing.
130s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
130s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
130s Setting up openssl (3.0.13-0ubuntu1) ...
130s Setting up readline-common (8.2-3.1) ...
130s Processing triggers for man-db (2.12.0-3) ...
131s Processing triggers for install-info (7.1-3) ...
131s Processing triggers for libc-bin (2.39-0ubuntu2) ...
132s Reading package lists...
133s Building dependency tree...
133s Reading state information...
135s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
135s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
135s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
135s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
135s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
140s Reading package lists...
140s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Calculating upgrade...
143s The following packages have been kept back:
143s   curl
144s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
146s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
150s autopkgtest [18:48:27]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
150s autopkgtest [18:48:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gunifrac
152s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-gunifrac 1.8+dfsg-1 (dsc) [2299 B]
152s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-gunifrac 1.8+dfsg-1 (tar) [307 kB]
152s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-gunifrac 1.8+dfsg-1 (diff) [2304 B]
153s gpgv: Signature made Fri Sep 22 13:31:38 2023 UTC
153s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
153s gpgv:                issuer "tille@debian.org"
153s gpgv: Can't check signature: No public key
153s dpkg-source: warning: cannot verify inline signature for ./r-cran-gunifrac_1.8+dfsg-1.dsc: no acceptable signature found
153s autopkgtest [18:48:30]: testing package r-cran-gunifrac version 1.8+dfsg-1
153s autopkgtest [18:48:30]: build not needed
154s autopkgtest [18:48:31]: test pkg-r-autopkgtest: preparing testbed
156s Reading package lists...
157s Building dependency tree...
157s Reading state information...
158s Starting pkgProblemResolver with broken count: 0
158s Starting 2 pkgProblemResolver with broken count: 0
158s Done
160s The following additional packages will be installed:
160s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
160s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
160s   fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax g++ g++-13
160s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
160s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
160s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
160s   libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev
160s   libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0
160s   libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
160s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
160s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
160s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
160s   libjs-mathjax liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
160s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
160s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
160s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
160s   libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0
160s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6
160s   libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
160s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
160s   linux-libc-dev littler node-normalize.css pkg-config pkg-r-autopkgtest
160s   pkgconf pkgconf-bin r-base-core r-base-dev r-cran-ade4 r-cran-ape r-cran-cli
160s   r-cran-clue r-cran-cluster r-cran-codetools r-cran-colorspace
160s   r-cran-commonmark r-cran-digest r-cran-dirmult r-cran-evaluate r-cran-fansi
160s   r-cran-farver r-cran-fbasics r-cran-foreach r-cran-ggplot2 r-cran-ggrepel
160s   r-cran-glue r-cran-gss r-cran-gtable r-cran-gunifrac r-cran-highr
160s   r-cran-inline r-cran-isoband r-cran-iterators r-cran-knitr r-cran-labeling
160s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr
160s   r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
160s   r-cran-modeest r-cran-munsell r-cran-nlme r-cran-permute r-cran-pillar
160s   r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-r6
160s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang
160s   r-cran-rmutil r-cran-rpart r-cran-scales r-cran-sp r-cran-spatial
160s   r-cran-stable r-cran-stabledist r-cran-statip r-cran-statmod r-cran-survival
160s   r-cran-tibble r-cran-timedate r-cran-timeseries r-cran-utf8 r-cran-vctrs
160s   r-cran-vegan r-cran-viridislite r-cran-withr r-cran-xfun r-cran-yaml
160s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
160s Suggested packages:
160s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
160s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
160s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
160s   liblapack-doc glibc-doc icu-doc fonts-mathjax-extras fonts-stix
160s   libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
160s   tcl8.6 tk8.6 libjs-html5shiv elpa-ess r-doc-info | r-doc-pdf r-mathlib
160s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
160s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
160s   texlive-latex-recommended texlive-latex-extra texinfo r-cran-adegraphics
160s   r-cran-adephylo r-cran-deldir r-cran-spdep r-cran-waveslim r-cran-progress
160s   r-cran-doparallel r-cran-gee r-cran-expm r-cran-igraph clustalw muscle phyml
160s   t-coffee r-cran-e1071 r-cran-lpsolve r-cran-quadprog r-cran-kernsmooth
160s   r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
160s   r-cran-dplyr r-cran-png r-cran-jpeg r-cran-rmarkdown r-cran-viridis
160s   r-cran-covr r-cran-runit r-cran-ggpubr r-cran-magick r-cran-sf r-cran-getopt
160s   r-cran-evd r-cran-testthat r-cran-vgam r-cran-bookdown r-cran-sessioninfo
160s   r-cran-bit64 r-cran-dbi r-cran-formattable r-cran-nanotime
160s   r-cran-palmerpenguins r-cran-stringi r-cran-units r-cran-vdiffr r-cran-bench
160s   r-cran-blob r-cran-brio r-cran-callr r-cran-crayon r-cran-here r-cran-hms
160s   r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr
160s   r-cran-robustbase
160s Recommended packages:
160s   bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools
160s   r-recommended r-doc-html r-cran-phangorn r-cran-callr r-cran-covr
160s   r-cran-crayon r-cran-htmltools r-cran-htmlwidgets r-cran-mockery
160s   r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
160s   r-cran-rstudioapi r-cran-testthat r-cran-whoami r-cran-curl r-cran-xml2
160s   r-cran-unitizer r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-mapproj
160s   r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
160s   r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-gridextra r-cran-patchwork
160s   r-cran-devtools r-cran-ggbeeswarm r-cran-readr r-cran-stringr r-cran-dbi
160s   r-cran-rsqlite r-cran-waldo r-cran-testit r-cran-bslib r-cran-formatr
160s   r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate
160s   r-cran-rgl r-cran-sass r-cran-tikzdevice r-cran-tinytex r-cran-webshot
160s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-rcurl
160s   r-cran-base64enc r-cran-r.devices r-cran-r.rsp r-cran-lubridate r-cran-fs
160s   r-cran-usethis r-cran-bit64 r-cran-dichromat r-cran-hms r-cran-stringi
160s   r-cran-gstat r-cran-deldir r-cran-terra r-cran-raster r-cran-data.table
160s   r-cran-mockr r-cran-formattable r-cran-generics r-cran-pkgdown
160s   r-cran-zeallot r-cran-mime r-cran-remotes r-cran-renv r-cran-jsonlite
160s   r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
160s   x11-utils x11-xserver-utils
160s The following packages will be REMOVED:
160s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
160s The following NEW packages will be installed:
160s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
160s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
160s   fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax
160s   g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
160s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
160s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
160s   libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev
160s   libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0
160s   libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
160s   libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1
160s   libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
160s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
160s   libjs-mathjax liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3
160s   libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0
160s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
160s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
160s   libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0
160s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6
160s   libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
160s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
160s   linux-libc-dev littler node-normalize.css pkg-config pkg-r-autopkgtest
160s   pkgconf pkgconf-bin r-base-core r-base-dev r-cran-ade4 r-cran-ape r-cran-cli
160s   r-cran-clue r-cran-cluster r-cran-codetools r-cran-colorspace
160s   r-cran-commonmark r-cran-digest r-cran-dirmult r-cran-evaluate r-cran-fansi
160s   r-cran-farver r-cran-fbasics r-cran-foreach r-cran-ggplot2 r-cran-ggrepel
160s   r-cran-glue r-cran-gss r-cran-gtable r-cran-gunifrac r-cran-highr
160s   r-cran-inline r-cran-isoband r-cran-iterators r-cran-knitr r-cran-labeling
160s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr
160s   r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
160s   r-cran-modeest r-cran-munsell r-cran-nlme r-cran-permute r-cran-pillar
160s   r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-r6
160s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rlang
160s   r-cran-rmutil r-cran-rpart r-cran-scales r-cran-sp r-cran-spatial
160s   r-cran-stable r-cran-stabledist r-cran-statip r-cran-statmod r-cran-survival
160s   r-cran-tibble r-cran-timedate r-cran-timeseries r-cran-utf8 r-cran-vctrs
160s   r-cran-vegan r-cran-viridislite r-cran-withr r-cran-xfun r-cran-yaml
160s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
160s The following packages will be upgraded:
160s   curl
160s 1 upgraded, 189 newly installed, 5 to remove and 0 not upgraded.
160s Need to get 204 MB/204 MB of archives.
160s After this operation, 578 MB of additional disk space will be used.
160s Get:1 /tmp/autopkgtest.xFswiK/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [740 B]
160s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
160s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
161s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
161s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
161s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
161s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
162s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
162s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
162s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
162s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
162s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
162s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
162s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
162s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
164s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
164s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
164s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
164s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
164s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
164s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
164s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
164s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
164s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
164s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
164s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
164s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
164s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
164s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
165s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
165s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
165s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
165s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
165s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
166s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
166s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
166s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
166s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
166s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
166s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
166s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
166s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
166s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
166s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
166s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
166s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
166s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
166s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
166s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
166s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
166s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
166s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
166s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
166s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
166s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
166s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
166s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
166s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
166s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
166s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
166s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
167s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
167s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
167s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
167s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
167s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
167s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
167s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
167s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
167s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
167s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
167s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
167s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
167s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
167s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
167s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
167s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
167s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
167s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
167s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
167s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
167s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
167s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
167s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
167s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
167s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
167s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
167s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
167s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
167s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
167s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
167s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
168s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
168s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
168s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
168s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
168s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
168s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
168s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
168s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
168s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
168s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
168s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
168s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
168s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
168s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
168s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
168s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
168s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
168s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
170s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
170s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
170s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
170s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
170s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
170s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
170s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
170s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
170s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
170s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
170s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pixmap all 0.4-12-1 [201 kB]
170s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
170s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB]
170s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
170s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
170s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB]
170s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ade4 arm64 1.7-22-1 [5324 kB]
170s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB]
170s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
170s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ape arm64 5.7-1-1 [2879 kB]
170s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
170s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB]
170s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clue arm64 0.3-65-1 [959 kB]
170s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB]
170s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB]
170s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
170s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dirmult all 0.1.3-5-1 [74.1 kB]
170s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
170s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
170s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB]
170s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timedate arm64 4032.109-1 [1229 kB]
170s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timeseries all 4032.109-1 [2019 kB]
170s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spatial arm64 7.3-17-1 [130 kB]
170s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gss arm64 2.2-7-1 [1674 kB]
170s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stabledist all 0.7-1-3 [75.2 kB]
170s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fbasics arm64 4032.96-1 [1557 kB]
171s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB]
171s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB]
171s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
171s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
171s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
171s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
171s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
171s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
171s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
171s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
171s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB]
171s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
171s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
171s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
171s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
171s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
171s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
171s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
171s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
171s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
171s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
171s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
171s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
171s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggrepel arm64 0.9.5-1 [250 kB]
171s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-permute all 0.9-7-1 [228 kB]
171s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vegan arm64 2.6-4+dfsg-1 [3088 kB]
171s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB]
171s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
171s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmutil arm64 1.1.10-1 [724 kB]
171s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stable arm64 1.1.6-1 [118 kB]
171s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB]
171s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB]
171s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statip arm64 0.2.3-2 [106 kB]
171s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modeest all 2.4.0-2 [142 kB]
171s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-inline all 0.3.19-2 [129 kB]
171s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gunifrac arm64 1.8+dfsg-1 [495 kB]
171s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
171s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
171s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
171s Get:188 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
172s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
172s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB]
173s Preconfiguring packages ...
173s Fetched 204 MB in 12s (17.6 MB/s)
173s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
173s  wget depends on libpsl5 (>= 0.16.0).
173s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
173s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
173s 
174s (Reading database ... 
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174s Removing libpsl5:arm64 (0.21.2-1build1) ...
174s Selecting previously unselected package libpsl5t64:arm64.
174s (Reading database ... 
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174s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
174s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
174s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
174s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
174s (Reading database ... 
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174s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
174s Selecting previously unselected package libcurl4t64:arm64.
174s (Reading database ... 
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(Reading database ... 75862 files and directories currently installed.)
174s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
174s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
174s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
174s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
174s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
174s 
174s (Reading database ... 
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(Reading database ... 75868 files and directories currently installed.)
174s Removing libpng16-16:arm64 (1.6.43-1) ...
175s Selecting previously unselected package libpng16-16t64:arm64.
175s (Reading database ... 
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(Reading database ... 75858 files and directories currently installed.)
175s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
175s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
175s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
175s  parted depends on libreadline8 (>= 6.0).
175s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
175s  libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
175s  gpgsm depends on libreadline8 (>= 6.0).
175s  gpgconf depends on libreadline8 (>= 6.0).
175s  gpg depends on libreadline8 (>= 6.0).
175s  gawk depends on libreadline8 (>= 6.0).
175s  fdisk depends on libreadline8 (>= 6.0).
175s 
175s (Reading database ... 
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(Reading database ... 75869 files and directories currently installed.)
175s Removing libreadline8:arm64 (8.2-3) ...
175s Selecting previously unselected package libreadline8t64:arm64.
175s (Reading database ... 
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(Reading database ... 75857 files and directories currently installed.)
175s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
175s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
175s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
175s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
175s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
175s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
175s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
175s  lsof depends on libtirpc3 (>= 1.0.2).
175s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
175s  libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
175s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
175s  iproute2 depends on libtirpc3 (>= 1.0.2).
175s 
175s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75877 files and directories currently installed.)
175s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
176s Selecting previously unselected package libtirpc3t64:arm64.
176s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75871 files and directories currently installed.)
176s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
176s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
176s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
176s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
176s Selecting previously unselected package libc-dev-bin.
176s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
176s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
176s Selecting previously unselected package linux-libc-dev:arm64.
176s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
176s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
176s Selecting previously unselected package libcrypt-dev:arm64.
176s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
177s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
177s Selecting previously unselected package libtirpc-dev:arm64.
177s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
177s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
177s Selecting previously unselected package libnsl-dev:arm64.
177s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
177s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
177s Selecting previously unselected package rpcsvc-proto.
177s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
177s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
177s Selecting previously unselected package libc6-dev:arm64.
177s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
177s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
177s Selecting previously unselected package libisl23:arm64.
177s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
177s Unpacking libisl23:arm64 (0.26-3) ...
177s Selecting previously unselected package libmpc3:arm64.
177s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
177s Unpacking libmpc3:arm64 (1.3.1-1) ...
178s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
178s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
178s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
178s Selecting previously unselected package cpp-13.
178s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
178s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
178s Selecting previously unselected package cpp-aarch64-linux-gnu.
178s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
178s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
178s Selecting previously unselected package cpp.
178s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
178s Unpacking cpp (4:13.2.0-7ubuntu1) ...
178s Selecting previously unselected package libcc1-0:arm64.
178s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
178s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package libgomp1:arm64.
179s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package libitm1:arm64.
179s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package libatomic1:arm64.
179s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package libasan8:arm64.
179s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package liblsan0:arm64.
179s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package libtsan2:arm64.
179s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
179s Selecting previously unselected package libubsan1:arm64.
179s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
179s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
180s Selecting previously unselected package libhwasan0:arm64.
180s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
180s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
180s Selecting previously unselected package libgcc-13-dev:arm64.
180s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
180s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
180s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
180s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
180s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
181s Selecting previously unselected package gcc-13.
181s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
181s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
181s Selecting previously unselected package gcc-aarch64-linux-gnu.
181s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
181s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
182s Selecting previously unselected package gcc.
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182s Unpacking gcc (4:13.2.0-7ubuntu1) ...
182s Selecting previously unselected package libstdc++-13-dev:arm64.
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182s Selecting previously unselected package g++-13-aarch64-linux-gnu.
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183s Selecting previously unselected package g++-aarch64-linux-gnu.
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183s Selecting previously unselected package build-essential.
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183s Selecting previously unselected package dctrl-tools.
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183s Selecting previously unselected package fonts-dejavu-mono.
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183s Unpacking fonts-dejavu-mono (2.37-8) ...
183s Selecting previously unselected package fonts-dejavu-core.
184s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
184s Unpacking fonts-dejavu-core (2.37-8) ...
184s Selecting previously unselected package fontconfig-config.
184s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
184s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
184s Selecting previously unselected package libfontconfig1:arm64.
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184s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
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185s Selecting previously unselected package fonts-glyphicons-halflings.
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185s Selecting previously unselected package fonts-mathjax.
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185s Selecting previously unselected package libgfortran5:arm64.
185s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
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185s Selecting previously unselected package libgfortran-13-dev:arm64.
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185s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
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185s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
186s Selecting previously unselected package gfortran-13.
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186s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
186s Selecting previously unselected package gfortran-aarch64-linux-gnu.
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186s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
186s Selecting previously unselected package gfortran.
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186s Selecting previously unselected package icu-devtools.
186s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_arm64.deb ...
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186s Selecting previously unselected package libblas3:arm64.
186s Preparing to unpack .../049-libblas3_3.12.0-3_arm64.deb ...
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187s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
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187s Selecting previously unselected package libpixman-1-0:arm64.
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187s Selecting previously unselected package libxcb-render0:arm64.
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187s Selecting previously unselected package libxrender1:arm64.
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187s Selecting previously unselected package libcairo2:arm64.
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187s Selecting previously unselected package libdatrie1:arm64.
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187s Selecting previously unselected package libdeflate0:arm64.
187s Preparing to unpack .../058-libdeflate0_1.19-1_arm64.deb ...
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187s Selecting previously unselected package libgraphite2-3:arm64.
187s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_arm64.deb ...
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187s Selecting previously unselected package libharfbuzz0b:arm64.
187s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_arm64.deb ...
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188s Selecting previously unselected package x11-common.
188s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ...
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188s Selecting previously unselected package libice6:arm64.
188s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_arm64.deb ...
188s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
188s Selecting previously unselected package libicu-dev:arm64.
188s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_arm64.deb ...
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189s Selecting previously unselected package libjpeg-turbo8:arm64.
189s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
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189s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
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189s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ...
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189s Selecting previously unselected package libjpeg8-dev:arm64.
189s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
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189s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
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189s Selecting previously unselected package libjs-bootstrap.
189s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
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189s Selecting previously unselected package libjs-highlight.js.
189s Preparing to unpack .../070-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
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190s Selecting previously unselected package libjs-jquery-datatables.
190s Preparing to unpack .../072-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
190s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
190s Selecting previously unselected package liblapack3:arm64.
190s Preparing to unpack .../073-liblapack3_3.12.0-3_arm64.deb ...
190s Unpacking liblapack3:arm64 (3.12.0-3) ...
190s Selecting previously unselected package liblapack-dev:arm64.
190s Preparing to unpack .../074-liblapack-dev_3.12.0-3_arm64.deb ...
190s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
190s Selecting previously unselected package liblerc4:arm64.
190s Preparing to unpack .../075-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
190s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
190s Selecting previously unselected package libncurses-dev:arm64.
190s Preparing to unpack .../076-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
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191s Selecting previously unselected package libthai-data.
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191s Selecting previously unselected package libthai0:arm64.
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191s Selecting previously unselected package libpango-1.0-0:arm64.
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191s Selecting previously unselected package libpangoft2-1.0-0:arm64.
191s Preparing to unpack .../080-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
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191s Selecting previously unselected package libpangocairo-1.0-0:arm64.
191s Preparing to unpack .../081-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
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191s Selecting previously unselected package libpaper1:arm64.
191s Preparing to unpack .../082-libpaper1_1.1.29_arm64.deb ...
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191s Selecting previously unselected package libpaper-utils.
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191s Selecting previously unselected package libpcre2-16-0:arm64.
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191s Selecting previously unselected package libpcre2-posix3:arm64.
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191s Selecting previously unselected package libpcre2-dev:arm64.
192s Preparing to unpack .../087-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
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192s Selecting previously unselected package libpkgconf3:arm64.
192s Preparing to unpack .../088-libpkgconf3_1.8.1-2_arm64.deb ...
192s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
192s Selecting previously unselected package zlib1g-dev:arm64.
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192s Selecting previously unselected package libpng-dev:arm64.
192s Preparing to unpack .../090-libpng-dev_1.6.43-3_arm64.deb ...
192s Unpacking libpng-dev:arm64 (1.6.43-3) ...
192s Selecting previously unselected package libreadline-dev:arm64.
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192s Selecting previously unselected package libsharpyuv0:arm64.
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192s Selecting previously unselected package libsm6:arm64.
192s Preparing to unpack .../093-libsm6_2%3a1.2.3-1build2_arm64.deb ...
192s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
192s Selecting previously unselected package libtcl8.6:arm64.
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193s Selecting previously unselected package libtk8.6:arm64.
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193s Selecting previously unselected package xdg-utils.
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194s Selecting previously unselected package r-base-core.
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195s Selecting previously unselected package r-cran-littler.
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195s Selecting previously unselected package node-normalize.css.
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195s Selecting previously unselected package pkgconf-bin.
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195s Selecting previously unselected package pkg-config:arm64.
195s Preparing to unpack .../111-pkg-config_1.8.1-2_arm64.deb ...
195s Unpacking pkg-config:arm64 (1.8.1-2) ...
195s Selecting previously unselected package liblzma-dev:arm64.
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195s Selecting previously unselected package r-base-dev.
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195s Selecting previously unselected package pkg-r-autopkgtest.
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196s Selecting previously unselected package r-cran-mass.
196s Preparing to unpack .../115-r-cran-mass_7.3-60.0.1-1_arm64.deb ...
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196s Selecting previously unselected package r-cran-pixmap.
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196s Selecting previously unselected package r-cran-pkgkitten.
196s Preparing to unpack .../119-r-cran-pkgkitten_0.2.3-1_all.deb ...
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196s Selecting previously unselected package r-cran-rcpp.
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197s Selecting previously unselected package r-cran-rcpparmadillo.
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197s Selecting previously unselected package r-cran-ade4.
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197s Selecting previously unselected package r-cran-nlme.
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197s Selecting previously unselected package r-cran-digest.
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197s Selecting previously unselected package r-cran-ape.
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198s Selecting previously unselected package r-cran-cli.
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198s Selecting previously unselected package r-cran-cluster.
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198s Unpacking r-cran-cluster (2.1.6-1) ...
198s Selecting previously unselected package r-cran-clue.
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198s Selecting previously unselected package r-cran-codetools.
198s Preparing to unpack .../129-r-cran-codetools_0.2-19-1_all.deb ...
198s Unpacking r-cran-codetools (0.2-19-1) ...
198s Selecting previously unselected package r-cran-colorspace.
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198s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
198s Selecting previously unselected package r-cran-commonmark.
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198s Selecting previously unselected package r-cran-dirmult.
198s Preparing to unpack .../132-r-cran-dirmult_0.1.3-5-1_all.deb ...
198s Unpacking r-cran-dirmult (0.1.3-5-1) ...
199s Selecting previously unselected package r-cran-evaluate.
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199s Unpacking r-cran-evaluate (0.23-1) ...
199s Selecting previously unselected package r-cran-fansi.
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199s Unpacking r-cran-fansi (1.0.5-1) ...
199s Selecting previously unselected package r-cran-farver.
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199s Unpacking r-cran-farver (2.1.1-1) ...
199s Selecting previously unselected package r-cran-timedate.
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199s Selecting previously unselected package r-cran-timeseries.
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199s Selecting previously unselected package r-cran-spatial.
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199s Selecting previously unselected package r-cran-gss.
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200s Selecting previously unselected package r-cran-iterators.
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200s Selecting previously unselected package r-cran-lifecycle.
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201s Selecting previously unselected package r-cran-gtable.
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201s Selecting previously unselected package r-cran-isoband.
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201s Selecting previously unselected package r-cran-matrix.
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201s Selecting previously unselected package r-cran-mgcv.
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201s Selecting previously unselected package r-cran-r6.
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202s Selecting previously unselected package r-cran-viridislite.
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202s Selecting previously unselected package r-cran-scales.
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203s Selecting previously unselected package r-cran-pkgconfig.
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204s Selecting previously unselected package r-cran-permute.
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204s Selecting previously unselected package r-cran-matrixstats.
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214s Setting up r-base-core (4.3.3-2build1) ...
215s 
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215s Setting up r-cran-farver (2.1.1-1) ...
215s Setting up r-cran-gss (2.2-7-1) ...
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215s Setting up r-cran-pixmap (0.4-12-1) ...
215s Setting up r-cran-cluster (2.1.6-1) ...
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215s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
215s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
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215s Setting up r-cran-dirmult (0.1.3-5-1) ...
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215s Setting up r-cran-pkgkitten (0.2.3-1) ...
215s Setting up r-cran-magrittr (2.0.3-1) ...
215s Setting up r-cran-littler (0.3.19-1) ...
215s Setting up r-cran-permute (0.9-7-1) ...
215s Setting up r-cran-rcpp (1.0.12-1) ...
215s Setting up r-cran-codetools (0.2-19-1) ...
215s Setting up r-cran-inline (0.3.19-2) ...
215s Setting up r-cran-rmutil (1.1.10-1) ...
215s Setting up r-cran-rlang (1.1.3-1) ...
215s Setting up r-cran-matrixstats (1.2.0-1) ...
215s Setting up littler (0.3.19-1) ...
215s Setting up r-cran-xfun (0.41+dfsg-1) ...
215s Setting up r-cran-withr (2.5.0-1) ...
215s Setting up r-cran-iterators (1.0.14-1) ...
215s Setting up r-cran-spatial (7.3-17-1) ...
215s Setting up r-cran-digest (0.6.34-1) ...
215s Setting up r-cran-ape (5.7-1-1) ...
215s Setting up r-cran-yaml (2.3.8-1) ...
215s Setting up r-cran-evaluate (0.23-1) ...
215s Setting up r-cran-timedate (4032.109-1) ...
215s Setting up r-cran-highr (0.10+dfsg-1) ...
215s Setting up r-cran-foreach (1.5.2-1) ...
215s Setting up r-cran-fansi (1.0.5-1) ...
215s Setting up r-cran-mass (7.3-60.0.1-1) ...
215s Setting up r-cran-stable (1.1.6-1) ...
215s Setting up r-cran-glue (1.7.0-1) ...
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215s Setting up r-cran-cli (3.6.2-1) ...
215s Setting up gfortran (4:13.2.0-7ubuntu1) ...
215s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
215s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
215s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
215s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
215s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
215s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
215s Setting up r-cran-sp (1:2.1-2+dfsg-1) ...
215s Setting up r-cran-utf8 (1.2.4-1) ...
215s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
215s Setting up r-cran-markdown (1.12+dfsg-1) ...
215s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
215s Setting up r-cran-isoband (0.2.7-1) ...
215s Setting up r-cran-stabledist (0.7-1-3) ...
215s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
215s Setting up r-cran-matrix (1.6-5-1) ...
215s Setting up r-cran-knitr (1.45+dfsg-1) ...
215s Setting up r-cran-mgcv (1.9-1-1) ...
215s Setting up g++ (4:13.2.0-7ubuntu1) ...
215s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
215s Setting up build-essential (12.10ubuntu1) ...
215s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
215s Setting up r-cran-vctrs (0.6.5-1) ...
215s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
215s Setting up r-base-dev (4.3.3-2build1) ...
215s Setting up r-cran-timeseries (4032.109-1) ...
215s Setting up r-cran-munsell (0.5.0-2build1) ...
215s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
215s Setting up r-cran-survival (3.5-8-1) ...
215s Setting up r-cran-ade4 (1.7-22-1) ...
215s Setting up r-cran-scales (1.3.0-1) ...
215s Setting up r-cran-vegan (2.6-4+dfsg-1) ...
215s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
215s Setting up r-cran-fbasics (4032.96-1) ...
215s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
215s Setting up r-cran-rpart (4.1.23-1) ...
215s Setting up r-cran-statip (0.2.3-2) ...
215s Setting up r-cran-ggrepel (0.9.5-1) ...
215s Setting up r-cran-modeest (2.4.0-2) ...
215s Setting up r-cran-gunifrac (1.8+dfsg-1) ...
215s Setting up autopkgtest-satdep (0) ...
215s Processing triggers for man-db (2.12.0-3) ...
217s Processing triggers for install-info (7.1-3) ...
217s Processing triggers for libc-bin (2.39-0ubuntu2) ...
237s (Reading database ... 93126 files and directories currently installed.)
237s Removing autopkgtest-satdep (0) ...
238s autopkgtest [18:49:55]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
238s autopkgtest [18:49:55]: test pkg-r-autopkgtest: [-----------------------
239s Test: Try to load the R library GUniFrac
239s 
239s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
239s Copyright (C) 2024 The R Foundation for Statistical Computing
239s Platform: aarch64-unknown-linux-gnu (64-bit)
239s 
239s R is free software and comes with ABSOLUTELY NO WARRANTY.
239s You are welcome to redistribute it under certain conditions.
239s Type 'license()' or 'licence()' for distribution details.
239s 
239s R is a collaborative project with many contributors.
239s Type 'contributors()' for more information and
239s 'citation()' on how to cite R or R packages in publications.
239s 
239s Type 'demo()' for some demos, 'help()' for on-line help, or
239s 'help.start()' for an HTML browser interface to help.
239s Type 'q()' to quit R.
239s 
239s > library('GUniFrac')
246s > 
246s > 
246s Other tests are currently unsupported!
246s They will be progressively added.
247s autopkgtest [18:50:04]: test pkg-r-autopkgtest: -----------------------]
247s pkg-r-autopkgtest    PASS
247s autopkgtest [18:50:04]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
248s autopkgtest [18:50:05]: @@@@@@@@@@@@@@@@@@@@ summary
248s pkg-r-autopkgtest    PASS
259s Creating nova instance adt-noble-arm64-r-cran-gunifrac-20240316-184557-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...