0s autopkgtest [02:15:18]: starting date: 2024-03-13 0s autopkgtest [02:15:18]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [02:15:18]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u5wyqcgt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-sf,src:cfitsio,src:gdal,src:geos,src:libkml,src:libpng1.6,src:netcdf,src:openssl,src:proj,src:spatialite,src:wp2latex,src:xerces-c,src:zlib --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-sf/1.0-15+dfsg-1build1 cfitsio/4.3.1-1.1 gdal/3.8.4+dfsg-3build1 geos/3.12.1-3 libkml/1.3.0-12 libpng1.6/1.6.43-3 netcdf/1:4.9.2-5ubuntu1 openssl/3.0.13-0ubuntu1 proj/9.4.0-1 spatialite/5.1.0-3 wp2latex/4.4~ds-1build1 xerces-c/3.2.4+debian-1.2 zlib/1:1.3.dfsg-3.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-23.secgroup --name adt-noble-arm64-r-cran-gstat-20240313-021518-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [02:16:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [447 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2742 kB] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [39.7 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [598 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [20.3 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3155 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [42.0 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 98s Fetched 7178 kB in 2s (4063 kB/s) 98s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s The following packages will be REMOVED: 102s libssl3 102s The following NEW packages will be installed: 102s libssl3t64 102s The following packages will be upgraded: 102s cloud-init firmware-sof-signed gdisk openssl zlib1g 103s 5 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 103s Need to get 7566 kB of archives. 103s After this operation, 89.1 kB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu1 [61.7 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 firmware-sof-signed all 2023.12.1-1ubuntu1 [3906 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 cloud-init all 24.1.1-0ubuntu1 [597 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 gdisk arm64 1.0.10-1 [249 kB] 108s Preconfiguring packages ... 108s Fetched 7566 kB in 1s (8873 kB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74748 files and directories currently installed.) 109s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 109s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 109s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 109s wget depends on libssl3 (>= 3.0.0). 109s u-boot-tools depends on libssl3 (>= 3.0.0). 109s tnftp depends on libssl3 (>= 3.0.0). 109s tcpdump depends on libssl3 (>= 3.0.0). 109s systemd-resolved depends on libssl3 (>= 3.0.0). 109s systemd depends on libssl3 (>= 3.0.0). 109s sudo depends on libssl3 (>= 3.0.0). 109s sbsigntool depends on libssl3 (>= 3.0.0). 109s rsync depends on libssl3 (>= 3.0.0). 109s python3-cryptography depends on libssl3 (>= 3.0.0). 109s openssh-server depends on libssl3 (>= 3.0.10). 109s openssh-client depends on libssl3 (>= 3.0.10). 109s mtd-utils depends on libssl3 (>= 3.0.0). 109s mokutil depends on libssl3 (>= 3.0.0). 109s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 109s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 109s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 109s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 109s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 109s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 109s libnvme1 depends on libssl3 (>= 3.0.0). 109s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 109s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 109s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 109s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 109s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 109s kmod depends on libssl3 (>= 3.0.0). 109s dhcpcd-base depends on libssl3 (>= 3.0.0). 109s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 109s 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74748 files and directories currently installed.) 109s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 109s Selecting previously unselected package libssl3t64:arm64. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74737 files and directories currently installed.) 109s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 109s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 109s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 109s Unpacking zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 109s Setting up zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74750 files and directories currently installed.) 109s Preparing to unpack .../firmware-sof-signed_2023.12.1-1ubuntu1_all.deb ... 109s Unpacking firmware-sof-signed (2023.12.1-1ubuntu1) over (2.2.6-1ubuntu4) ... 109s Preparing to unpack .../cloud-init_24.1.1-0ubuntu1_all.deb ... 110s Unpacking cloud-init (24.1.1-0ubuntu1) over (24.1-0ubuntu1) ... 110s Preparing to unpack .../gdisk_1.0.10-1_arm64.deb ... 110s Unpacking gdisk (1.0.10-1) over (1.0.9-2.1) ... 110s Setting up cloud-init (24.1.1-0ubuntu1) ... 111s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 111s Setting up firmware-sof-signed (2023.12.1-1ubuntu1) ... 111s Setting up gdisk (1.0.10-1) ... 111s Setting up openssl (3.0.13-0ubuntu1) ... 111s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 111s Processing triggers for man-db (2.12.0-3) ... 112s Processing triggers for libc-bin (2.39-0ubuntu2) ... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s sh: Attempting to set up Debian/Ubuntu apt sources automatically 114s sh: Distribution appears to be Ubuntu 115s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s eatmydata is already the newest version (131-1). 117s dbus is already the newest version (1.14.10-4ubuntu1). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s rng-tools-debian is already the newest version (2.4). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s haveged is already the newest version (1.9.14-1ubuntu1). 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s The following packages will be REMOVED: 119s cloud-init* python3-configobj* python3-debconf* 119s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 119s After this operation, 3252 kB disk space will be freed. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 119s Removing cloud-init (24.1.1-0ubuntu1) ... 120s Removing python3-configobj (5.0.8-3) ... 120s Removing python3-debconf (1.5.86) ... 120s Processing triggers for man-db (2.12.0-3) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74372 files and directories currently installed.) 120s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 121s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 121s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s linux-generic is already the newest version (6.8.0-11.11+1). 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 122s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 124s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s Calculating upgrade... 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s autopkgtest [02:17:25]: rebooting testbed after setup commands that affected boot 324s autopkgtest [02:20:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 325s autopkgtest [02:20:43]: testbed dpkg architecture: arm64 326s autopkgtest [02:20:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 328s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 328s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 328s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 329s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 329s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 329s gpgv: issuer "tille@debian.org" 329s gpgv: Can't check signature: No public key 329s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 329s autopkgtest [02:20:47]: testing package r-cran-gstat version 2.1-1-2 329s autopkgtest [02:20:47]: build not needed 330s autopkgtest [02:20:48]: test run-unit-test: preparing testbed 333s Reading package lists... 334s Building dependency tree... 334s Reading state information... 334s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 334s Starting 2 pkgProblemResolver with broken count: 0 335s Done 335s Done 335s Starting pkgProblemResolver with broken count: 0 336s Starting 2 pkgProblemResolver with broken count: 0 336s Done 336s The following additional packages will be installed: 336s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 336s gdal-plugins libaec0 libarmadillo12 libarpack2 libblas3 libblosc1 libcairo2 336s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 336s libfreexl1 libfyba0 libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 336s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 336s libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 336s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 336s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 336s libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 336s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 336s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpoppler134 libpq5 337s libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 337s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 337s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 337s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 337s libxt6 littler mysql-common proj-data r-base-core r-cran-abind r-cran-class 337s r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 337s r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply 337s r-cran-globals r-cran-gstat r-cran-intervals r-cran-kernsmooth 337s r-cran-lattice r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata 337s r-cran-maps r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy 337s r-cran-raster r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime 337s r-cran-sp r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra 337s r-cran-units r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo 337s unixodbc-common unzip x11-common xdg-utils zip 337s Suggested packages: 337s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc libhdf4-alt-dev hdf4-tools 337s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 337s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 337s libheif-plugin-svtenc liblcms2-utils odbc-postgresql tdsodbc ogdi-bin 337s proj-bin tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 337s r-cran-rmysql r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr 337s r-cran-rmarkdown r-cran-mapproj r-cran-inline r-cran-nanoarrow 337s Recommended packages: 337s proj-bin libheif-plugin-aomenc libheif-plugin-x265 poppler-data 337s r-recommended r-base-dev r-doc-html r-cran-spdata r-cran-knitr 337s r-cran-rmarkdown r-cran-tinytest r-cran-rhpcblasctl r-cran-rcolorbrewer 337s r-cran-roxygen2 r-cran-testthat r-cran-r.rsp r-cran-markdown r-cran-r.utils 337s r-cran-crayon r-cran-cba r-cran-ncdf4 r-cran-igraph r-cran-exactextractr 337s r-cran-cli r-cran-covr r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble 337s r-cran-usethis r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob 337s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix r-cran-pbapply 337s r-cran-rpostgresql r-cran-rsqlite r-cran-spatstat r-cran-spatstat.geom 337s r-cran-spatstat.random r-cran-spatstat.linnet r-cran-spatstat.utils 337s r-cran-tidyr r-cran-tidyselect r-cran-ncmeta r-cran-deldir r-cran-foreign 337s r-cran-plm r-cran-googlevis r-cran-isocodes r-cran-truncdist r-cran-cairo 337s r-cran-pcict r-cran-rnetcdf r-cran-clue r-cran-cubelyr r-cran-ggforce 337s r-cran-ggthemes r-cran-httr r-cran-jsonlite r-cran-ncdfgeom 337s r-cran-randomforest r-cran-viridis r-cran-xml r-cran-htmlwidgets r-cran-xml2 337s r-cran-vdiffr r-cran-readr r-cran-timeseries r-cran-timedate r-cran-tseries 337s r-cran-chron libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 337s x11-utils x11-xserver-utils 337s The following packages will be REMOVED: 337s libpng16-16 337s The following NEW packages will be installed: 337s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 337s gdal-plugins libaec0 libarmadillo12 libarpack2 libblas3 libblosc1 libcairo2 337s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 337s libfreexl1 libfyba0 libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 337s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 337s libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 337s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 337s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 337s libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 337s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 337s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpoppler134 libpq5 337s libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 337s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 337s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 337s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 337s libxt6 littler mysql-common proj-data r-base-core r-cran-abind r-cran-class 337s r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 337s r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply 337s r-cran-globals r-cran-gstat r-cran-intervals r-cran-kernsmooth 337s r-cran-lattice r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata 337s r-cran-maps r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy 337s r-cran-raster r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime 337s r-cran-sp r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra 337s r-cran-units r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo 337s unixodbc-common unzip x11-common xdg-utils zip 337s 0 upgraded, 138 newly installed, 1 to remove and 0 not upgraded. 337s 1 not fully installed or removed. 337s Need to get 137 MB of archives. 337s After this operation, 293 MB of additional disk space will be used. 337s Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 337s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 337s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 337s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 337s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 337s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 337s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 337s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 337s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 337s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 337s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 337s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 337s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 337s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 337s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 337s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 337s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 337s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 338s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 338s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 338s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 338s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 338s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 338s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 338s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 338s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 338s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 338s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 338s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 338s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 338s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 338s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 338s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 338s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 338s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 338s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 338s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 338s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 338s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 338s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 338s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 338s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 338s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 338s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 338s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 338s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 338s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 339s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 339s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 339s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 339s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 339s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 339s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 339s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 339s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 339s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 339s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 339s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 339s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 339s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 339s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 339s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 339s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 339s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 339s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 339s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gdal-data all 3.8.4+dfsg-3build1 [261 kB] 339s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 gdal-plugins arm64 3.8.4+dfsg-3build1 [24.6 kB] 339s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 339s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 339s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 339s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 339s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 339s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 339s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libcfitsio10t64 arm64 4.3.1-1.1 [520 kB] 339s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libminizip1t64 arm64 1:1.3.dfsg-3.1ubuntu1 [22.7 kB] 339s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 339s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 339s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgeos3.12.1t64 arm64 3.12.1-3 [827 kB] 339s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgeos-c1t64 arm64 3.12.1-3 [88.7 kB] 339s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 proj-data all 9.4.0-1 [7885 kB] 339s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libproj25 arm64 9.4.0-1 [1293 kB] 339s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 339s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 339s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 339s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 339s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 339s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 339s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 339s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 339s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 339s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 339s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 339s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmlbase1t64 arm64 1.3.0-12 [47.7 kB] 339s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmldom1t64 arm64 1.3.0-12 [146 kB] 339s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libkmlengine1t64 arm64 1.3.0-12 [68.1 kB] 339s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 339s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 339s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 339s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libnetcdf19t64 arm64 1:4.9.2-5ubuntu1 [471 kB] 339s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 339s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 339s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 340s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 340s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 340s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 340s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 340s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 340s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 340s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 340s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 340s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libspatialite8t64 arm64 5.1.0-3 [1815 kB] 340s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.2 [874 kB] 340s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libgdal34t64 arm64 3.8.4+dfsg-3build1 [7900 kB] 340s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1build1 [2990 kB] 341s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 341s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 341s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 341s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spacetime all 1.3-1-1 [2804 kB] 341s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 341s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 341s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stars all 0.6-4-1 [4030 kB] 341s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 341s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gstat arm64 2.1-1-2 [2338 kB] 341s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dotcall64 arm64 1.1-1-1 [38.5 kB] 341s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spam arm64 2.10-0-1 [2759 kB] 341s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 341s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 341s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fields arm64 15.2-1 [4090 kB] 341s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 342s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-terra arm64 1.7-65-1 [3587 kB] 342s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 342s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 342s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 342s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 342s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 342s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 342s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 342s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 343s Preconfiguring packages ... 343s Fetched 137 MB in 6s (24.4 MB/s) 344s Selecting previously unselected package zip. 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74317 files and directories currently installed.) 344s Preparing to unpack .../00-zip_3.0-13_arm64.deb ... 344s Unpacking zip (3.0-13) ... 344s Selecting previously unselected package unzip. 344s Preparing to unpack .../01-unzip_6.0-28ubuntu3_arm64.deb ... 344s Unpacking unzip (6.0-28ubuntu3) ... 344s Selecting previously unselected package libpaper1:arm64. 344s Preparing to unpack .../02-libpaper1_1.1.29_arm64.deb ... 344s Unpacking libpaper1:arm64 (1.1.29) ... 344s Selecting previously unselected package libpaper-utils. 344s Preparing to unpack .../03-libpaper-utils_1.1.29_arm64.deb ... 344s Unpacking libpaper-utils (1.1.29) ... 344s Selecting previously unselected package xdg-utils. 344s Preparing to unpack .../04-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 344s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 344s Selecting previously unselected package libblas3:arm64. 344s Preparing to unpack .../05-libblas3_3.12.0-3_arm64.deb ... 344s Unpacking libblas3:arm64 (3.12.0-3) ... 344s Selecting previously unselected package fonts-dejavu-mono. 344s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 344s Unpacking fonts-dejavu-mono (2.37-8) ... 344s Selecting previously unselected package fonts-dejavu-core. 344s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 344s Unpacking fonts-dejavu-core (2.37-8) ... 344s Selecting previously unselected package fontconfig-config. 344s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 344s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 344s Selecting previously unselected package libfontconfig1:arm64. 344s Preparing to unpack .../09-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 344s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 344s Selecting previously unselected package libpixman-1-0:arm64. 345s Preparing to unpack .../10-libpixman-1-0_0.42.2-1_arm64.deb ... 345s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 345s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 345s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 345s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 345s 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74539 files and directories currently installed.) 345s Removing libpng16-16:arm64 (1.6.43-1) ... 345s Selecting previously unselected package libpng16-16t64:arm64. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74529 files and directories currently installed.) 345s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_arm64.deb ... 345s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 345s Selecting previously unselected package libxcb-render0:arm64. 345s Preparing to unpack .../001-libxcb-render0_1.15-1_arm64.deb ... 345s Unpacking libxcb-render0:arm64 (1.15-1) ... 345s Selecting previously unselected package libxcb-shm0:arm64. 345s Preparing to unpack .../002-libxcb-shm0_1.15-1_arm64.deb ... 345s Unpacking libxcb-shm0:arm64 (1.15-1) ... 345s Selecting previously unselected package libxrender1:arm64. 345s Preparing to unpack .../003-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 345s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 345s Selecting previously unselected package libcairo2:arm64. 345s Preparing to unpack .../004-libcairo2_1.18.0-1_arm64.deb ... 345s Unpacking libcairo2:arm64 (1.18.0-1) ... 345s Selecting previously unselected package libgomp1:arm64. 345s Preparing to unpack .../005-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 345s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package libjpeg-turbo8:arm64. 345s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 345s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 345s Selecting previously unselected package libjpeg8:arm64. 345s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_arm64.deb ... 345s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 345s Selecting previously unselected package libgfortran5:arm64. 345s Preparing to unpack .../008-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 345s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package liblapack3:arm64. 345s Preparing to unpack .../009-liblapack3_3.12.0-3_arm64.deb ... 345s Unpacking liblapack3:arm64 (3.12.0-3) ... 345s Selecting previously unselected package fontconfig. 345s Preparing to unpack .../010-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 345s Unpacking fontconfig (2.15.0-1ubuntu1) ... 345s Selecting previously unselected package libgraphite2-3:arm64. 345s Preparing to unpack .../011-libgraphite2-3_1.3.14-2_arm64.deb ... 345s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 345s Selecting previously unselected package libharfbuzz0b:arm64. 345s Preparing to unpack .../012-libharfbuzz0b_8.3.0-2_arm64.deb ... 345s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 345s Selecting previously unselected package libthai-data. 346s Preparing to unpack .../013-libthai-data_0.1.29-2_all.deb ... 346s Unpacking libthai-data (0.1.29-2) ... 346s Selecting previously unselected package libdatrie1:arm64. 346s Preparing to unpack .../014-libdatrie1_0.2.13-3_arm64.deb ... 346s Unpacking libdatrie1:arm64 (0.2.13-3) ... 346s Selecting previously unselected package libthai0:arm64. 346s Preparing to unpack .../015-libthai0_0.1.29-2_arm64.deb ... 346s Unpacking libthai0:arm64 (0.1.29-2) ... 346s Selecting previously unselected package libpango-1.0-0:arm64. 346s Preparing to unpack .../016-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 346s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 346s Selecting previously unselected package libpangoft2-1.0-0:arm64. 346s Preparing to unpack .../017-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 346s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 346s Selecting previously unselected package libpangocairo-1.0-0:arm64. 346s Preparing to unpack .../018-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 346s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 346s Selecting previously unselected package libtcl8.6:arm64. 346s Preparing to unpack .../019-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 346s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 346s Selecting previously unselected package libdeflate0:arm64. 346s Preparing to unpack .../020-libdeflate0_1.19-1_arm64.deb ... 346s Unpacking libdeflate0:arm64 (1.19-1) ... 346s Selecting previously unselected package libjbig0:arm64. 346s Preparing to unpack .../021-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 346s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 346s Selecting previously unselected package liblerc4:arm64. 346s Preparing to unpack .../022-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 346s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 346s Selecting previously unselected package libsharpyuv0:arm64. 346s Preparing to unpack .../023-libsharpyuv0_1.3.2-0.4_arm64.deb ... 346s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 346s Selecting previously unselected package libwebp7:arm64. 346s Preparing to unpack .../024-libwebp7_1.3.2-0.4_arm64.deb ... 346s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 346s Selecting previously unselected package libtiff6:arm64. 346s Preparing to unpack .../025-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 346s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 346s Selecting previously unselected package libxft2:arm64. 346s Preparing to unpack .../026-libxft2_2.3.6-1_arm64.deb ... 346s Unpacking libxft2:arm64 (2.3.6-1) ... 346s Selecting previously unselected package x11-common. 346s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu2_all.deb ... 346s Unpacking x11-common (1:7.7+23ubuntu2) ... 346s Selecting previously unselected package libxss1:arm64. 346s Preparing to unpack .../028-libxss1_1%3a1.2.3-1build2_arm64.deb ... 346s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 346s Selecting previously unselected package libtk8.6:arm64. 346s Preparing to unpack .../029-libtk8.6_8.6.13-2_arm64.deb ... 346s Unpacking libtk8.6:arm64 (8.6.13-2) ... 346s Selecting previously unselected package libice6:arm64. 346s Preparing to unpack .../030-libice6_2%3a1.0.10-1build2_arm64.deb ... 346s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 346s Selecting previously unselected package libsm6:arm64. 347s Preparing to unpack .../031-libsm6_2%3a1.2.3-1build2_arm64.deb ... 347s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 347s Selecting previously unselected package libxt6:arm64. 347s Preparing to unpack .../032-libxt6_1%3a1.2.1-1.1_arm64.deb ... 347s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 347s Selecting previously unselected package r-base-core. 347s Preparing to unpack .../033-r-base-core_4.3.2-1build1_arm64.deb ... 347s Unpacking r-base-core (4.3.2-1build1) ... 347s Selecting previously unselected package r-cran-lattice. 347s Preparing to unpack .../034-r-cran-lattice_0.22-5-1_arm64.deb ... 347s Unpacking r-cran-lattice (0.22-5-1) ... 347s Selecting previously unselected package r-cran-sp. 347s Preparing to unpack .../035-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 347s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 347s Selecting previously unselected package r-cran-zoo. 347s Preparing to unpack .../036-r-cran-zoo_1.8-12-2_arm64.deb ... 347s Unpacking r-cran-zoo (1.8-12-2) ... 347s Selecting previously unselected package r-cran-mass. 347s Preparing to unpack .../037-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 347s Unpacking r-cran-mass (7.3-60.0.1-1) ... 347s Selecting previously unselected package r-cran-class. 347s Preparing to unpack .../038-r-cran-class_7.3-22-2_arm64.deb ... 347s Unpacking r-cran-class (7.3-22-2) ... 347s Selecting previously unselected package r-cran-proxy. 347s Preparing to unpack .../039-r-cran-proxy_0.4-27-1_arm64.deb ... 347s Unpacking r-cran-proxy (0.4-27-1) ... 347s Selecting previously unselected package r-cran-e1071. 347s Preparing to unpack .../040-r-cran-e1071_1.7-14-1_arm64.deb ... 347s Unpacking r-cran-e1071 (1.7-14-1) ... 348s Selecting previously unselected package r-cran-kernsmooth. 348s Preparing to unpack .../041-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 348s Unpacking r-cran-kernsmooth (2.23-22-1) ... 348s Selecting previously unselected package r-cran-classint. 348s Preparing to unpack .../042-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 348s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 348s Selecting previously unselected package r-cran-dbi. 348s Preparing to unpack .../043-r-cran-dbi_1.2.2-1_all.deb ... 348s Unpacking r-cran-dbi (1.2.2-1) ... 348s Selecting previously unselected package r-cran-magrittr. 348s Preparing to unpack .../044-r-cran-magrittr_2.0.3-1_arm64.deb ... 348s Unpacking r-cran-magrittr (2.0.3-1) ... 348s Selecting previously unselected package r-cran-littler. 348s Preparing to unpack .../045-r-cran-littler_0.3.19-1_arm64.deb ... 348s Unpacking r-cran-littler (0.3.19-1) ... 348s Selecting previously unselected package littler. 348s Preparing to unpack .../046-littler_0.3.19-1_all.deb ... 348s Unpacking littler (0.3.19-1) ... 348s Selecting previously unselected package r-cran-pkgkitten. 348s Preparing to unpack .../047-r-cran-pkgkitten_0.2.3-1_all.deb ... 348s Unpacking r-cran-pkgkitten (0.2.3-1) ... 348s Selecting previously unselected package r-cran-rcpp. 348s Preparing to unpack .../048-r-cran-rcpp_1.0.12-1_arm64.deb ... 348s Unpacking r-cran-rcpp (1.0.12-1) ... 348s Selecting previously unselected package r-cran-wk. 348s Preparing to unpack .../049-r-cran-wk_0.9.1-1_arm64.deb ... 348s Unpacking r-cran-wk (0.9.1-1) ... 348s Selecting previously unselected package r-cran-s2. 348s Preparing to unpack .../050-r-cran-s2_1.1.6-1_arm64.deb ... 348s Unpacking r-cran-s2 (1.1.6-1) ... 348s Selecting previously unselected package libudunits2-data. 348s Preparing to unpack .../051-libudunits2-data_2.2.28-7_all.deb ... 348s Unpacking libudunits2-data (2.2.28-7) ... 348s Selecting previously unselected package libudunits2-0. 348s Preparing to unpack .../052-libudunits2-0_2.2.28-7_arm64.deb ... 348s Unpacking libudunits2-0 (2.2.28-7) ... 348s Selecting previously unselected package r-cran-units. 348s Preparing to unpack .../053-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 348s Unpacking r-cran-units (0.8-5+dfsg-1) ... 348s Selecting previously unselected package gdal-data. 348s Preparing to unpack .../054-gdal-data_3.8.4+dfsg-3build1_all.deb ... 348s Unpacking gdal-data (3.8.4+dfsg-3build1) ... 349s Selecting previously unselected package gdal-plugins:arm64. 349s Preparing to unpack .../055-gdal-plugins_3.8.4+dfsg-3build1_arm64.deb ... 349s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-3build1) ... 349s Selecting previously unselected package libaec0:arm64. 349s Preparing to unpack .../056-libaec0_1.1.2-1_arm64.deb ... 349s Unpacking libaec0:arm64 (1.1.2-1) ... 349s Selecting previously unselected package libarpack2:arm64. 349s Preparing to unpack .../057-libarpack2_3.9.1-1_arm64.deb ... 349s Unpacking libarpack2:arm64 (3.9.1-1) ... 349s Selecting previously unselected package libsuperlu6:arm64. 349s Preparing to unpack .../058-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 349s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 349s Selecting previously unselected package libarmadillo12. 349s Preparing to unpack .../059-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 349s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 349s Selecting previously unselected package libsnappy1v5:arm64. 349s Preparing to unpack .../060-libsnappy1v5_1.1.10-1_arm64.deb ... 349s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 349s Selecting previously unselected package libblosc1:arm64. 349s Preparing to unpack .../061-libblosc1_1.21.5+ds-1_arm64.deb ... 349s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 349s Selecting previously unselected package libcfitsio10t64:arm64. 349s Preparing to unpack .../062-libcfitsio10t64_4.3.1-1.1_arm64.deb ... 349s Unpacking libcfitsio10t64:arm64 (4.3.1-1.1) ... 349s Selecting previously unselected package libminizip1t64:arm64. 349s Preparing to unpack .../063-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 349s Unpacking libminizip1t64:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 349s Selecting previously unselected package libfreexl1:arm64. 349s Preparing to unpack .../064-libfreexl1_2.0.0-1_arm64.deb ... 349s Unpacking libfreexl1:arm64 (2.0.0-1) ... 349s Selecting previously unselected package libfyba0:arm64. 349s Preparing to unpack .../065-libfyba0_4.1.1-8_arm64.deb ... 349s Unpacking libfyba0:arm64 (4.1.1-8) ... 349s Selecting previously unselected package libgeos3.12.1t64:arm64. 349s Preparing to unpack .../066-libgeos3.12.1t64_3.12.1-3_arm64.deb ... 349s Unpacking libgeos3.12.1t64:arm64 (3.12.1-3) ... 349s Selecting previously unselected package libgeos-c1t64:arm64. 349s Preparing to unpack .../067-libgeos-c1t64_3.12.1-3_arm64.deb ... 349s Unpacking libgeos-c1t64:arm64 (3.12.1-3) ... 349s Selecting previously unselected package proj-data. 349s Preparing to unpack .../068-proj-data_9.4.0-1_all.deb ... 349s Unpacking proj-data (9.4.0-1) ... 349s Selecting previously unselected package libproj25:arm64. 349s Preparing to unpack .../069-libproj25_9.4.0-1_arm64.deb ... 349s Unpacking libproj25:arm64 (9.4.0-1) ... 349s Selecting previously unselected package libgeotiff5:arm64. 349s Preparing to unpack .../070-libgeotiff5_1.7.1-5_arm64.deb ... 349s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 350s Selecting previously unselected package libgif7:arm64. 350s Preparing to unpack .../071-libgif7_5.2.1-2.5_arm64.deb ... 350s Unpacking libgif7:arm64 (5.2.1-2.5) ... 350s Selecting previously unselected package libhdf4-0-alt. 350s Preparing to unpack .../072-libhdf4-0-alt_4.2.16-3_arm64.deb ... 350s Unpacking libhdf4-0-alt (4.2.16-3) ... 350s Selecting previously unselected package libsz2:arm64. 350s Preparing to unpack .../073-libsz2_1.1.2-1_arm64.deb ... 350s Unpacking libsz2:arm64 (1.1.2-1) ... 350s Selecting previously unselected package libhdf5-103-1:arm64. 350s Preparing to unpack .../074-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 350s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 350s Selecting previously unselected package libdav1d7:arm64. 350s Preparing to unpack .../075-libdav1d7_1.4.0-1_arm64.deb ... 350s Unpacking libdav1d7:arm64 (1.4.0-1) ... 350s Selecting previously unselected package libheif-plugin-dav1d:arm64. 350s Preparing to unpack .../076-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 350s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 350s Selecting previously unselected package libde265-0:arm64. 350s Preparing to unpack .../077-libde265-0_1.0.15-1_arm64.deb ... 350s Unpacking libde265-0:arm64 (1.0.15-1) ... 350s Selecting previously unselected package libheif-plugin-libde265:arm64. 350s Preparing to unpack .../078-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 350s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 350s Selecting previously unselected package libheif1:arm64. 350s Preparing to unpack .../079-libheif1_1.17.6-1ubuntu1_arm64.deb ... 350s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 350s Selecting previously unselected package liburiparser1:arm64. 350s Preparing to unpack .../080-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 350s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 350s Selecting previously unselected package libkmlbase1t64:arm64. 350s Preparing to unpack .../081-libkmlbase1t64_1.3.0-12_arm64.deb ... 350s Unpacking libkmlbase1t64:arm64 (1.3.0-12) ... 350s Selecting previously unselected package libkmldom1t64:arm64. 350s Preparing to unpack .../082-libkmldom1t64_1.3.0-12_arm64.deb ... 350s Unpacking libkmldom1t64:arm64 (1.3.0-12) ... 350s Selecting previously unselected package libkmlengine1t64:arm64. 350s Preparing to unpack .../083-libkmlengine1t64_1.3.0-12_arm64.deb ... 350s Unpacking libkmlengine1t64:arm64 (1.3.0-12) ... 350s Selecting previously unselected package mysql-common. 350s Preparing to unpack .../084-mysql-common_5.8+1.1.0_all.deb ... 350s Unpacking mysql-common (5.8+1.1.0) ... 350s Selecting previously unselected package libmysqlclient21:arm64. 350s Preparing to unpack .../085-libmysqlclient21_8.0.36-1_arm64.deb ... 350s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 350s Selecting previously unselected package libhdf5-hl-100:arm64. 350s Preparing to unpack .../086-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 350s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 350s Selecting previously unselected package libnetcdf19t64:arm64. 350s Preparing to unpack .../087-libnetcdf19t64_1%3a4.9.2-5ubuntu1_arm64.deb ... 350s Unpacking libnetcdf19t64:arm64 (1:4.9.2-5ubuntu1) ... 350s Selecting previously unselected package libltdl7:arm64. 350s Preparing to unpack .../088-libltdl7_2.4.7-7_arm64.deb ... 350s Unpacking libltdl7:arm64 (2.4.7-7) ... 351s Selecting previously unselected package libodbc2:arm64. 351s Preparing to unpack .../089-libodbc2_2.3.12-1_arm64.deb ... 351s Unpacking libodbc2:arm64 (2.3.12-1) ... 351s Selecting previously unselected package unixodbc-common. 351s Preparing to unpack .../090-unixodbc-common_2.3.12-1_all.deb ... 351s Unpacking unixodbc-common (2.3.12-1) ... 351s Selecting previously unselected package libodbcinst2:arm64. 351s Preparing to unpack .../091-libodbcinst2_2.3.12-1_arm64.deb ... 351s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 351s Selecting previously unselected package libogdi4.1. 351s Preparing to unpack .../092-libogdi4.1_4.1.1+ds-1_arm64.deb ... 351s Unpacking libogdi4.1 (4.1.1+ds-1) ... 351s Selecting previously unselected package libopenjp2-7:arm64. 351s Preparing to unpack .../093-libopenjp2-7_2.5.0-2_arm64.deb ... 351s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 351s Selecting previously unselected package liblcms2-2:arm64. 351s Preparing to unpack .../094-liblcms2-2_2.14-2_arm64.deb ... 351s Unpacking liblcms2-2:arm64 (2.14-2) ... 351s Selecting previously unselected package libpoppler134:arm64. 351s Preparing to unpack .../095-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 351s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 351s Selecting previously unselected package libpq5:arm64. 351s Preparing to unpack .../096-libpq5_16.2-1_arm64.deb ... 351s Unpacking libpq5:arm64 (16.2-1) ... 351s Selecting previously unselected package libqhull-r8.0:arm64. 351s Preparing to unpack .../097-libqhull-r8.0_2020.2-6_arm64.deb ... 351s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 351s Selecting previously unselected package librttopo1:arm64. 351s Preparing to unpack .../098-librttopo1_1.1.0-3_arm64.deb ... 351s Unpacking librttopo1:arm64 (1.1.0-3) ... 351s Selecting previously unselected package libspatialite8t64:arm64. 351s Preparing to unpack .../099-libspatialite8t64_5.1.0-3_arm64.deb ... 351s Unpacking libspatialite8t64:arm64 (5.1.0-3) ... 351s Selecting previously unselected package libxerces-c3.2t64:arm64. 351s Preparing to unpack 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r-cran-terra (1.7-65-1) ... 359s Setting up r-cran-sf (1.0-15+dfsg-1build1) ... 359s Setting up r-cran-stars (0.6-4-1) ... 359s Setting up r-cran-sftime (0.2-0-6) ... 359s Setting up r-cran-gstat (2.1-1-2) ... 359s Setting up r-cran-raster (3.6-26-1) ... 359s Setting up autopkgtest-satdep (0) ... 359s Processing triggers for libc-bin (2.39-0ubuntu2) ... 359s Processing triggers for man-db (2.12.0-3) ... 360s Processing triggers for install-info (7.1-3) ... 373s (Reading database ... 80664 files and directories currently installed.) 373s Removing autopkgtest-satdep (0) ... 374s autopkgtest [02:21:32]: test run-unit-test: [----------------------- 374s BEGIN TEST allier.R 375s 375s R version 4.3.2 (2023-10-31) -- "Eye Holes" 375s Copyright (C) 2023 The R Foundation for Statistical Computing 375s Platform: aarch64-unknown-linux-gnu (64-bit) 375s 375s R is free software and comes with ABSOLUTELY NO WARRANTY. 375s You are welcome to redistribute it under certain conditions. 375s Type 'license()' or 'licence()' for distribution details. 375s 375s R is a collaborative project with many contributors. 375s Type 'contributors()' for more information and 375s 'citation()' on how to cite R or R packages in publications. 375s 375s Type 'demo()' for some demos, 'help()' for on-line help, or 375s 'help.start()' for an HTML browser interface to help. 375s Type 'q()' to quit R. 375s 375s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 375s > library(sp) 375s > library(gstat) 376s > 376s > # some data 376s > x <- c(215, 330, 410, 470, 545) 376s > y <- c(230, 310, 330, 340, 365) 376s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 376s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 376s > Allier <- data.frame(x, y, fc, por) 376s > coordinates(Allier) = ~x+y 376s > 376s > # gstat object for co-kriging using linear model of co-regionalization 376s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 376s + model=vgm(0.00247, "Sph", 480, 0.00166)) 376s > g <- gstat(g, id="por", formula=por~1, data=Allier, 376s + model=vgm(0.00239, "Sph", 480, 0.00118)) 376s > g <- gstat(g, id=c("fc", "por"), 376s + model=vgm(0.00151, "Sph", 480, -0.00124)) 376s > 376s > # predict at single point 376s > g$set = list(choleski = 0) # LDL' 376s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 377s Linear Model of Coregionalization found. Good. 377s [using ordinary cokriging] 377s we're at location X: 450 Y: 350 Z: 0 377s zero block size 377s we're at point X: 450 Y: 350 Z: 0 377s 377s # X: 377s #Matrix: 10 by 2 377s rbind( 377s c( 1.000000, 0.000000), # row 1 377s c( 1.000000, 0.000000), # row 2 377s c( 1.000000, 0.000000), # row 3 377s c( 1.000000, 0.000000), # row 4 377s c( 1.000000, 0.000000), # row 5 377s c( 0.000000, 1.000000), # row 6 377s c( 0.000000, 1.000000), # row 7 377s c( 0.000000, 1.000000), # row 8 377s c( 0.000000, 1.000000), # row 9 377s c( 0.000000, 1.000000) # row 10 377s ) 377s [using generalized covariances: max_val - semivariance()] 377s # Covariances (x_i, x_j) matrix C (upper triangle): 377s #Matrix: 10 by 10 377s rbind( 377s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 377s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 377s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 377s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 377s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 377s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 377s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 377s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 377s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 377s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 377s ) 377s 377s # glm->C, LDL' decomposed:: 377s #Matrix: 10 by 10 377s rbind( 377s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 377s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 377s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 377s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 377s ) 377s 377s # X'C-1 X: 377s #Matrix: 2 by 2 377s rbind( 377s c(665.433994, -232.313340), # row 1 377s c(-232.313340, 729.440848) # row 2 377s ) 377s 377s # beta: 377s #Vector: dim: 2 377s c( 0.244216, 0.440933) 377s # Cov(beta), (X'C-1 X)-1: 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.001691, 0.000538), # row 1 377s c( 0.000538, 0.001542) # row 2 377s ) 377s 377s # Corr(beta): 377s #Matrix: 2 by 2 377s rbind( 377s c( 1.000000, 0.333447), # row 1 377s c( 0.333447, 1.000000) # row 2 377s ) 377s 377s # X0 (X values at prediction location x0): 377s #Matrix: 2 by 2 377s rbind( 377s c( 1.000000, 0.000000), # row 1 377s c( 0.000000, 1.000000) # row 2 377s ) 377s 377s # BLUE(mu), E(y(x0)) = X0'beta: 377s #Vector: dim: 2 377s c( 0.244216, 0.440933) 377s # Covariances (x_i, x_0), C0: 377s #Matrix: 10 by 2 377s rbind( 377s c( 0.000638, 0.000390), # row 1 377s c( 0.001516, 0.000927), # row 2 377s c( 0.002126, 0.001300), # row 3 377s c( 0.002298, 0.001405), # row 4 377s c( 0.001738, 0.001062), # row 5 377s c( 0.000390, 0.000618), # row 6 377s c( 0.000927, 0.001467), # row 7 377s c( 0.001300, 0.002057), # row 8 377s c( 0.001405, 0.002223), # row 9 377s c( 0.001062, 0.001681) # row 10 377s ) 377s 377s # C-1 C0: 377s #Matrix: 10 by 2 377s rbind( 377s c( 0.008927, -0.017995), # row 1 377s c( 0.061935, -0.028550), # row 2 377s c( 0.225195, 0.078344), # row 3 377s c( 0.356735, 0.190177), # row 4 377s c( 0.094128, -0.023136), # row 5 377s c(-0.021119, 0.004935), # row 6 377s c(-0.033508, 0.055601), # row 7 377s c( 0.091947, 0.242576), # row 8 377s c( 0.223200, 0.398927), # row 9 377s c(-0.027153, 0.088995) # row 10 377s ) 377s 377s # [a] Cov_ij(B,B) or Cov_ij(0,0): 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.004130, 0.000270), # row 1 377s c( 0.000270, 0.003570) # row 2 377s ) 377s 377s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.000129, -0.000107), # row 1 377s c(-0.000107, 0.000089) # row 2 377s ) 377s 377s # [b] c0'C-1 c0: 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.001926, 0.001532), # row 1 377s c( 0.001532, 0.001931) # row 2 377s ) 377s 377s # Best Linear Unbiased Predictor: 377s #Vector: dim: 2 377s c( 0.253090, 0.441258) 377s # MSPE ([a]-[b]+[c]): 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.002332, -0.001369), # row 1 377s c(-0.001369, 0.001729) # row 2 377s ) 377s 377s # kriging weights: 377s #Matrix: 10 by 2 377s rbind( 377s c( 0.071177, -0.064988), # row 1 377s c( 0.108451, -0.066123), # row 2 377s c( 0.268160, 0.043141), # row 3 377s c( 0.401959, 0.153312), # row 4 377s c( 0.150253, -0.065342), # row 5 377s c(-0.076273, 0.056759), # row 6 377s c(-0.077605, 0.093781), # row 7 377s c( 0.050632, 0.277731), # row 8 377s c( 0.179933, 0.435972), # row 9 377s c(-0.076688, 0.135756) # row 10 377s ) 377s 377s 377s > g$set = list(choleski = 1) # Choleski 377s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 377s Linear Model of Coregionalization found. Good. 377s [using ordinary cokriging] 377s we're at location X: 450 Y: 350 Z: 0 377s zero block size 377s we're at point X: 450 Y: 350 Z: 0 377s 377s # X: 377s #Matrix: 10 by 2 377s rbind( 377s c( 1.000000, 0.000000), # row 1 377s c( 1.000000, 0.000000), # row 2 377s c( 1.000000, 0.000000), # row 3 377s c( 1.000000, 0.000000), # row 4 377s c( 1.000000, 0.000000), # row 5 377s c( 0.000000, 1.000000), # row 6 377s c( 0.000000, 1.000000), # row 7 377s c( 0.000000, 1.000000), # row 8 377s c( 0.000000, 1.000000), # row 9 377s c( 0.000000, 1.000000) # row 10 377s ) 377s [using generalized covariances: max_val - semivariance()] 377s # Covariances (x_i, x_j) matrix C (upper triangle): 377s #Matrix: 10 by 10 377s rbind( 377s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 377s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 377s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 377s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 377s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 377s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 377s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 377s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 377s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 377s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 377s ) 377s 377s # glm->C, Choleski decomposed:: 377s #Matrix: 10 by 10 377s rbind( 377s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 377s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 377s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 377s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 377s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 377s ) 377s 377s # X'C-1 X: 377s #Matrix: 2 by 2 377s rbind( 377s c(665.433994, -232.313340), # row 1 377s c(-232.313340, 729.440848) # row 2 377s ) 377s 377s # beta: 377s #Vector: dim: 2 377s c( 0.244216, 0.440933) 377s # Cov(beta), (X'C-1 X)-1: 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.001691, 0.000538), # row 1 377s c( 0.000538, 0.001542) # row 2 377s ) 377s 377s # Corr(beta): 377s #Matrix: 2 by 2 377s rbind( 377s c( 1.000000, 0.333447), # row 1 377s c( 0.333447, 1.000000) # row 2 377s ) 377s 377s # X0 (X values at prediction location x0): 377s #Matrix: 2 by 2 377s rbind( 377s c( 1.000000, 0.000000), # row 1 377s c( 0.000000, 1.000000) # row 2 377s ) 377s 377s # BLUE(mu), E(y(x0)) = X0'beta: 377s #Vector: dim: 2 377s c( 0.244216, 0.440933) 377s # Covariances (x_i, x_0), C0: 377s #Matrix: 10 by 2 377s rbind( 377s c( 0.000638, 0.000390), # row 1 377s c( 0.001516, 0.000927), # row 2 377s c( 0.002126, 0.001300), # row 3 377s c( 0.002298, 0.001405), # row 4 377s c( 0.001738, 0.001062), # row 5 377s c( 0.000390, 0.000618), # row 6 377s c( 0.000927, 0.001467), # row 7 377s c( 0.001300, 0.002057), # row 8 377s c( 0.001405, 0.002223), # row 9 377s c( 0.001062, 0.001681) # row 10 377s ) 377s 377s # C-1 C0: 377s #Matrix: 10 by 2 377s rbind( 377s c( 0.008927, -0.017995), # row 1 377s c( 0.061935, -0.028550), # row 2 377s c( 0.225195, 0.078344), # row 3 377s c( 0.356735, 0.190177), # row 4 377s c( 0.094128, -0.023136), # row 5 377s c(-0.021119, 0.004935), # row 6 377s c(-0.033508, 0.055601), # row 7 377s c( 0.091947, 0.242576), # row 8 377s c( 0.223200, 0.398927), # row 9 377s c(-0.027153, 0.088995) # row 10 377s ) 377s 377s # [a] Cov_ij(B,B) or Cov_ij(0,0): 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.004130, 0.000270), # row 1 377s c( 0.000270, 0.003570) # row 2 377s ) 377s 377s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.000129, -0.000107), # row 1 377s c(-0.000107, 0.000089) # row 2 377s ) 377s 377s # [b] c0'C-1 c0: 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.001926, 0.001532), # row 1 377s c( 0.001532, 0.001931) # row 2 377s ) 377s 377s # Best Linear Unbiased Predictor: 377s #Vector: dim: 2 377s c( 0.253090, 0.441258) 377s # MSPE ([a]-[b]+[c]): 377s #Matrix: 2 by 2 377s rbind( 377s c( 0.002332, -0.001369), # row 1 377s c(-0.001369, 0.001729) # row 2 377s ) 377s 377s # kriging weights: 377s #Matrix: 10 by 2 377s rbind( 377s c( 0.071177, -0.064988), # row 1 377s c( 0.108451, -0.066123), # row 2 377s c( 0.268160, 0.043141), # row 3 377s c( 0.401959, 0.153312), # row 4 377s c( 0.150253, -0.065342), # row 5 377s c(-0.076273, 0.056759), # row 6 377s c(-0.077605, 0.093781), # row 7 377s c( 0.050632, 0.277731), # row 8 377s c( 0.179933, 0.435972), # row 9 377s c(-0.076688, 0.135756) # row 10 377s ) 377s 377s 377s > all.equal(A,B) 377s [1] TRUE 377s > 377s > # TRUE 377s > 377s BEGIN TEST blockkr.R 377s 377s R version 4.3.2 (2023-10-31) -- "Eye Holes" 377s Copyright (C) 2023 The R Foundation for Statistical Computing 377s Platform: aarch64-unknown-linux-gnu (64-bit) 377s 377s R is free software and comes with ABSOLUTELY NO WARRANTY. 377s You are welcome to redistribute it under certain conditions. 377s Type 'license()' or 'licence()' for distribution details. 377s 377s R is a collaborative project with many contributors. 377s Type 'contributors()' for more information and 377s 'citation()' on how to cite R or R packages in publications. 377s 377s Type 'demo()' for some demos, 'help()' for on-line help, or 377s 'help.start()' for an HTML browser interface to help. 377s Type 'q()' to quit R. 377s 377s > library(sp) 377s > data(meuse) 377s > coordinates(meuse) = c("x", "y") 377s > new.locs <- SpatialPoints(data.frame( 377s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 377s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 377s > library(gstat) 378s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 378s + block = c(40,40), nmax = 40) 378s [using ordinary kriging] 378s coordinates var1.pred var1.var 378s 1 (181170, 333250) 268.7576 19447.67 378s 2 (180310, 332189) 663.4915 16991.33 378s 3 (180205, 331707) 251.4606 21579.71 378s 4 (178673, 330066) 532.5776 73807.91 378s 5 (178770, 330675) 664.4039 23589.17 378s 6 (178270, 331075) 565.5436 155113.23 378s > 378s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 378s > 378s > disc = c(-15,-5,5,15) 378s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 378s > block.irreg 378s x y 378s 1 -15 -15 378s 2 -5 -15 378s 3 5 -15 378s 4 15 -15 378s 5 -15 -5 378s 6 -5 -5 378s 7 5 -5 378s 8 15 -5 378s 9 -15 5 378s 10 -5 5 378s 11 5 5 378s 12 15 5 378s 13 -15 15 378s 14 -5 15 378s 15 5 15 378s 16 15 15 378s > 378s > # first disable default Gaussian quadrature used for block integration, by 378s > # setting nblockdiscr explicitly: 378s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 378s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 378s [using ordinary kriging] 378s coordinates var1.pred var1.var 378s 1 (181170, 333250) 268.7324 19568.76 378s > # now pass the same block discretization as block.irreg: 378s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 378s + block = block.irreg, nmax = 40) 378s [using ordinary kriging] 378s coordinates var1.pred var1.var 378s 1 (181170, 333250) 268.7324 19568.76 378s > # check weights argument: 378s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 378s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 378s + block = block.irreg, nmax = 40) 378s [using ordinary kriging] 378s coordinates var1.pred var1.var 378s 1 (181170, 333250) 268.7324 19568.76 378s > 378s BEGIN TEST covtable.R 378s 378s R version 4.3.2 (2023-10-31) -- "Eye Holes" 378s Copyright (C) 2023 The R Foundation for Statistical Computing 378s Platform: aarch64-unknown-linux-gnu (64-bit) 378s 378s R is free software and comes with ABSOLUTELY NO WARRANTY. 378s You are welcome to redistribute it under certain conditions. 378s Type 'license()' or 'licence()' for distribution details. 378s 378s R is a collaborative project with many contributors. 378s Type 'contributors()' for more information and 378s 'citation()' on how to cite R or R packages in publications. 378s 378s Type 'demo()' for some demos, 'help()' for on-line help, or 378s 'help.start()' for an HTML browser interface to help. 378s Type 'q()' to quit R. 378s 378s > library(gstat) 379s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 379s > d$z=1:4 379s > vv=vgm(model = "Tab", covtable = 379s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 379s > vv 379s model psill maxdist 379s 1 Tab NA 1 379s covariance table: 379s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 379s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 379s [using ordinary kriging] 379s x y var1.pred var1.var 379s 1 0 0 2.5 1.017767 379s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 379s [using ordinary kriging] 379s x y var1.pred var1.var 379s 1 0 0 2.5 1.017863 379s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 379s [using ordinary kriging] 379s x y var1.pred var1.var 379s 1 0 0 1.5 1.267767 379s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 379s [using ordinary kriging] 379s x y var1.pred var1.var 379s 1 0 0 1.5 1.267863 379s > 379s BEGIN TEST cv.R 379s 379s R version 4.3.2 (2023-10-31) -- "Eye Holes" 379s Copyright (C) 2023 The R Foundation for Statistical Computing 379s Platform: aarch64-unknown-linux-gnu (64-bit) 379s 379s R is free software and comes with ABSOLUTELY NO WARRANTY. 379s You are welcome to redistribute it under certain conditions. 379s Type 'license()' or 'licence()' for distribution details. 379s 379s R is a collaborative project with many contributors. 379s Type 'contributors()' for more information and 379s 'citation()' on how to cite R or R packages in publications. 379s 379s Type 'demo()' for some demos, 'help()' for on-line help, or 379s 'help.start()' for an HTML browser interface to help. 379s Type 'q()' to quit R. 379s 379s > # try bivariate cokriging; cross validate first variable 379s > library(sp) 380s > data(meuse) 380s > library(gstat) 380s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 380s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 380s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 380s > v=variogram(g) 380s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 380s > g=fit.lmc(v, g) 380s > g 380s data: 380s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 380s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 380s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 380s variograms: 380s model psill range 380s log-zinc Sph 0.7132435 1000 380s log-lead Sph 0.6133020 1000 380s log-copper Sph 0.3634211 1000 380s log-zinc.log-lead Sph 0.6367012 1000 380s log-zinc.log-copper Sph 0.4570044 1000 380s log-lead.log-copper Sph 0.3934910 1000 380s ~x + y 380s > set.seed(13131) 380s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 380s Intrinsic Correlation found. Good. 380s [using ordinary cokriging] 380s Intrinsic Correlation found. Good. 380s [using ordinary cokriging] 380s Intrinsic Correlation found. Good. 380s [using ordinary cokriging] 380s Intrinsic Correlation found. Good. 380s [using ordinary cokriging] 381s Intrinsic Correlation found. Good. 381s [using ordinary cokriging] 381s log.zinc.pred log.zinc.var observed residual 381s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 381s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 381s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 381s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 381s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 381s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 381s zscore fold x y 381s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 381s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 381s Median :-0.10755 Median :3.000 Median :179991 Median :331633 381s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 381s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 381s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 381s Warning message: 381s In checkNames(value) : 381s attempt to set invalid names: this may lead to problems later on. See ?make.names 381s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 381s Intrinsic Correlation found. Good. 381s [using ordinary cokriging] 381s Intrinsic Correlation found. Good. 381s [using ordinary cokriging] 381s Intrinsic Correlation found. Good. 381s [using ordinary cokriging] 381s Intrinsic Correlation found. Good. 381s [using ordinary cokriging] 381s Intrinsic Correlation found. Good. 381s [using ordinary cokriging] 381s log.zinc.pred log.zinc.var observed residual 381s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 381s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 381s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 381s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 381s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 381s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 381s zscore fold x y 381s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 381s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 381s Median : 0.007242 Median :3.000 Median :179991 Median :331633 381s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 381s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 381s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 381s > 381s Warning message: 381s In checkNames(value) : 381s attempt to set invalid names: this may lead to problems later on. See ?make.names 381s BEGIN TEST cv3d.R 381s 381s R version 4.3.2 (2023-10-31) -- "Eye Holes" 381s Copyright (C) 2023 The R Foundation for Statistical Computing 381s Platform: aarch64-unknown-linux-gnu (64-bit) 381s 381s R is free software and comes with ABSOLUTELY NO WARRANTY. 381s You are welcome to redistribute it under certain conditions. 381s Type 'license()' or 'licence()' for distribution details. 381s 381s R is a collaborative project with many contributors. 381s Type 'contributors()' for more information and 381s 'citation()' on how to cite R or R packages in publications. 381s 381s Type 'demo()' for some demos, 'help()' for on-line help, or 381s 'help.start()' for an HTML browser interface to help. 381s Type 'q()' to quit R. 381s 381s > options(digits = 4) 381s > set.seed(1131) 381s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 381s > library(gstat) 381s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 382s > summary(xx) 382s var1.pred var1.var observed residual 382s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 382s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 382s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 382s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 382s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 382s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 382s zscore fold x y 382s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 382s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 382s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 382s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 382s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 382s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 382s z 382s Min. :0.0016 382s 1st Qu.:0.1865 382s Median :0.4485 382s Mean :0.4714 382s 3rd Qu.:0.7240 382s Max. :0.9942 382s > 382s BEGIN TEST fit.R 382s 382s R version 4.3.2 (2023-10-31) -- "Eye Holes" 382s Copyright (C) 2023 The R Foundation for Statistical Computing 382s Platform: aarch64-unknown-linux-gnu (64-bit) 382s 382s R is free software and comes with ABSOLUTELY NO WARRANTY. 382s You are welcome to redistribute it under certain conditions. 382s Type 'license()' or 'licence()' for distribution details. 382s 382s R is a collaborative project with many contributors. 382s Type 'contributors()' for more information and 382s 'citation()' on how to cite R or R packages in publications. 382s 382s Type 'demo()' for some demos, 'help()' for on-line help, or 382s 'help.start()' for an HTML browser interface to help. 382s Type 'q()' to quit R. 382s 382s > library(sp) 383s > data(meuse) 383s > library(gstat) 383s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 383s > v$gamma=c(0.5,1,2,3,3) 383s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 383s model psill range 383s 1 Nug 0.000000 0.00 383s 2 Sph 7.878195 1567.77Warning message: 383s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 383s partial sill or nugget fixed at zero value 383s 383s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 383s model psill range 383s 1 Nug 0.000000 0.00 383s 2 Sph 7.878195 1567.77 383s > 383s BEGIN TEST krige0.R 383s 383s R version 4.3.2 (2023-10-31) -- "Eye Holes" 383s Copyright (C) 2023 The R Foundation for Statistical Computing 383s Platform: aarch64-unknown-linux-gnu (64-bit) 383s 383s R is free software and comes with ABSOLUTELY NO WARRANTY. 383s You are welcome to redistribute it under certain conditions. 383s Type 'license()' or 'licence()' for distribution details. 383s 383s R is a collaborative project with many contributors. 383s Type 'contributors()' for more information and 383s 'citation()' on how to cite R or R packages in publications. 383s 383s Type 'demo()' for some demos, 'help()' for on-line help, or 383s 'help.start()' for an HTML browser interface to help. 383s Type 'q()' to quit R. 383s 383s > # test -- load data: 383s > library(sp) 384s > data(meuse) 384s > coordinates(meuse) = ~x+y 384s > data(meuse.grid) 384s > gridded(meuse.grid) = ~x+y 384s > 384s > library(gstat) 384s > # test -- idw 384s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 385s > x <- idw(zinc~1, meuse, meuse.grid) 385s [inverse distance weighted interpolation] 385s > all.equal(x$var1.pred, meuse.grid$idw) 385s [1] TRUE 385s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 385s > v = vgm(1, "Exp", 500) 385s > # test sk: 385s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 385s > rownames(x0$pred)=NULL 385s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 385s [using simple kriging] 385s > all.equal(x$var1.pred, x0$pred[,1]) 385s [1] TRUE 385s > all.equal(x$var1.var, x0$var) 385s [1] TRUE 385s > # test ok: 385s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 385s > rownames(x0$pred)=NULL 385s > names(x0$var)=NULL 385s > x <- krige(zinc~1, meuse, meuse.grid, v) 385s [using ordinary kriging] 385s > all.equal(x$var1.pred, x0$pred[,1]) 385s [1] TRUE 385s > all.equal(x$var1.var, x0$var) 385s [1] TRUE 385s > # test uk: 385s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 385s > rownames(x0$pred)=NULL 385s > names(x0$var)=NULL 385s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 385s [using universal kriging] 386s > all.equal(x$var1.pred, x0$pred[,1]) 386s [1] TRUE 386s > all.equal(x$var1.var, x0$var) 386s [1] TRUE 386s > 386s BEGIN TEST line.R 386s 386s R version 4.3.2 (2023-10-31) -- "Eye Holes" 386s Copyright (C) 2023 The R Foundation for Statistical Computing 386s Platform: aarch64-unknown-linux-gnu (64-bit) 386s 386s R is free software and comes with ABSOLUTELY NO WARRANTY. 386s You are welcome to redistribute it under certain conditions. 386s Type 'license()' or 'licence()' for distribution details. 386s 386s R is a collaborative project with many contributors. 386s Type 'contributors()' for more information and 386s 'citation()' on how to cite R or R packages in publications. 386s 386s Type 'demo()' for some demos, 'help()' for on-line help, or 386s 'help.start()' for an HTML browser interface to help. 386s Type 'q()' to quit R. 386s 386s > options(digits=5) 386s > library(sp) 386s > data(meuse.grid) 386s > gridded(meuse.grid) = ~x+y 386s > data(meuse) 386s > coordinates(meuse) = ~x+y 386s > 386s > # choose arbitrary line over the grid: 386s > image(meuse.grid["dist"],axes=T) 386s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 386s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 386s > plot(Sl,add=T,col='green') 386s > 386s > # use the default spsample arguments of predict.gstat: 386s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 386s > plot(pts, pch=3, cex=.2, add=T) 386s > 386s > library(gstat) 387s > v = vgm(.6, "Sph", 900, .06) 387s > out1 = krige(log(zinc)~1, meuse, Sl, v) 387s [using ordinary kriging] 387s > out1 387s An object of class "SpatialLinesDataFrame" 387s Slot "data": 387s x y var1.pred var1.var 387s a 180333 332167 6.1618 0.008025 387s 387s Slot "lines": 387s [[1]] 387s An object of class "Lines" 387s Slot "Lines": 387s [[1]] 387s An object of class "Line" 387s Slot "coords": 387s [,1] [,2] 387s [1,] 180000 331000 387s [2,] 180000 332000 387s [3,] 181000 333500 387s 387s 387s 387s Slot "ID": 387s [1] "a" 387s 387s 387s 387s Slot "bbox": 387s min max 387s x 180000 181000 387s y 331000 333500 387s 387s Slot "proj4string": 387s Coordinate Reference System: 387s Deprecated Proj.4 representation: NA 387s 387s > 387s > points(180333,332167,pch=3,cex=2) 387s > 387s > # use the same line as block discretization, and predict for (0,0) 387s > # (because the block discretizing points are not centered) 387s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 387s [using ordinary kriging] 387s > out2 387s coordinates var1.pred var1.var 387s 1 (0, 0) 6.1618 0.008025 387s > 387s > compare.krigingLines = function(formula, data, newdata, model) { 387s + out1 = krige(formula, data, newdata, model) 387s + pts = spsample(newdata, n=500, 'regular', offset=.5) 387s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 387s + print("difference:") 387s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 387s + } 387s > 387s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 387s [using ordinary kriging] 387s [using ordinary kriging] 387s [1] "difference:" 387s var1.pred var1.var 387s a 0 0 387s > 387s > # one line, consisting of two line segments: 387s > pp2 = rbind(c(181000,333500),c(181000,332500)) 387s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 387s > krige(log(zinc)~1, meuse, Sl2, v) 387s [using ordinary kriging] 387s An object of class "SpatialLinesDataFrame" 387s Slot "data": 387s x y var1.pred var1.var 387s a 180667 332583 6.0424 0.0053191 387s 387s Slot "lines": 387s [[1]] 387s An object of class "Lines" 387s Slot "Lines": 387s [[1]] 387s An object of class "Line" 387s Slot "coords": 387s [,1] [,2] 387s [1,] 180000 331000 387s [2,] 180000 332000 387s [3,] 181000 333500 387s 387s 387s [[2]] 387s An object of class "Line" 387s Slot "coords": 387s [,1] [,2] 387s [1,] 181000 333500 387s [2,] 181000 332500 387s 387s 387s 387s Slot "ID": 387s [1] "a" 387s 387s 387s 387s Slot "bbox": 387s min max 387s x 180000 181000 387s y 331000 333500 387s 387s Slot "proj4string": 387s Coordinate Reference System: 387s Deprecated Proj.4 representation: NA 387s 387s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 387s [using ordinary kriging] 387s [using ordinary kriging] 387s [1] "difference:" 387s var1.pred var1.var 387s a 0 0 387s > 387s > # two seperate line segments: 387s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 387s > krige(log(zinc)~1, meuse, Sl3, v) 387s [using ordinary kriging] 387s An object of class "SpatialLinesDataFrame" 387s Slot "data": 387s x y var1.pred var1.var 387s a 180333 332167 6.1618 0.008025 387s b 181000 333000 5.7060 0.011043 387s 387s Slot "lines": 387s [[1]] 387s An object of class "Lines" 387s Slot "Lines": 387s [[1]] 387s An object of class "Line" 387s Slot "coords": 387s [,1] [,2] 387s [1,] 180000 331000 387s [2,] 180000 332000 387s [3,] 181000 333500 387s 387s 387s 387s Slot "ID": 387s [1] "a" 387s 387s 387s [[2]] 387s An object of class "Lines" 387s Slot "Lines": 387s [[1]] 387s An object of class "Line" 387s Slot "coords": 387s [,1] [,2] 387s [1,] 181000 333500 387s [2,] 181000 332500 387s 387s 387s 387s Slot "ID": 387s [1] "b" 387s 387s 387s 387s Slot "bbox": 387s min max 387s x 180000 181000 387s y 331000 333500 387s 387s Slot "proj4string": 387s Coordinate Reference System: 387s Deprecated Proj.4 representation: NA 387s 387s > 387s BEGIN TEST merge.R 387s 387s R version 4.3.2 (2023-10-31) -- "Eye Holes" 387s Copyright (C) 2023 The R Foundation for Statistical Computing 387s Platform: aarch64-unknown-linux-gnu (64-bit) 387s 387s R is free software and comes with ABSOLUTELY NO WARRANTY. 387s You are welcome to redistribute it under certain conditions. 387s Type 'license()' or 'licence()' for distribution details. 387s 387s R is a collaborative project with many contributors. 387s Type 'contributors()' for more information and 387s 'citation()' on how to cite R or R packages in publications. 387s 387s Type 'demo()' for some demos, 'help()' for on-line help, or 387s 'help.start()' for an HTML browser interface to help. 387s Type 'q()' to quit R. 387s 387s > options(digits=6) 387s > # illustrates the use of merge, for merging parameters accross variables: 387s > # Z1=m+e1(s) 387s > # Z2=m+e2(s) 387s > # Z1 and Z2 each have a different variogram, but share the parameter m 387s > # see documentation of gstat() function 387s > library(gstat) 388s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 388s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 388s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 388s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 388s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 388s > predict(g, data.frame(x=1,y=1), debug = 32) 388s Intrinsic Correlation found. Good. 388s [using ordinary cokriging] 388s we're at location X: 1 Y: 1 Z: 0 388s zero block size 388s we're at point X: 1 Y: 1 Z: 0 388s 388s # X: 388s #Matrix: 4 by 1 388s rbind( 388s c( 1.000000), # row 1 388s c( 1.000000), # row 2 388s c( 1.000000), # row 3 388s c( 1.000000) # row 4 388s ) 388s [using generalized covariances: max_val - semivariance()] 388s # Covariances (x_i, x_j) matrix C (upper triangle): 388s #Matrix: 4 by 4 388s rbind( 388s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 388s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 388s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 388s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 388s ) 388s 388s # glm->C, Choleski decomposed:: 388s #Matrix: 4 by 4 388s rbind( 388s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 388s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 388s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 388s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 388s ) 388s 388s # X'C-1 X: 388s #Matrix: 1 by 1 388s rbind( 388s c( 3.245289) # row 1 388s ) 388s 388s # beta: 388s #Vector: dim: 1 388s c( 2.500000) 388s # Cov(beta), (X'C-1 X)-1: 388s #Matrix: 1 by 1 388s rbind( 388s c( 0.308139) # row 1 388s ) 388s 388s # Corr(beta): 388s #Matrix: 1 by 1 388s rbind( 388s c( 1.000000) # row 1 388s ) 388s 388s # X0 (X values at prediction location x0): 388s #Matrix: 1 by 2 388s rbind( 388s c( 1.000000, 1.000000) # row 1 388s ) 388s 388s # BLUE(mu), E(y(x0)) = X0'beta: 388s #Vector: dim: 2 388s c( 2.500000, 2.500000) 388s # Covariances (x_i, x_0), C0: 388s #Matrix: 4 by 2 388s rbind( 388s c( 0.243117, 0.121558), # row 1 388s c( 0.243117, 0.121558), # row 2 388s c( 0.121558, 0.243117), # row 3 388s c( 0.121558, 0.243117) # row 4 388s ) 388s 388s # C-1 C0: 388s #Matrix: 4 by 2 388s rbind( 388s c( 0.206482, 0.089387), # row 1 388s c( 0.206482, 0.089387), # row 2 388s c( 0.089387, 0.206482), # row 3 388s c( 0.089387, 0.206482) # row 4 388s ) 388s 388s # [a] Cov_ij(B,B) or Cov_ij(0,0): 388s #Matrix: 2 by 2 388s rbind( 388s c( 1.000000, 0.500000), # row 1 388s c( 0.500000, 1.000000) # row 2 388s ) 388s 388s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 388s #Matrix: 2 by 2 388s rbind( 388s c( 0.051360, 0.051360), # row 1 388s c( 0.051360, 0.051360) # row 2 388s ) 388s 388s # [b] c0'C-1 c0: 388s #Matrix: 2 by 2 388s rbind( 388s c( 0.122130, 0.093662), # row 1 388s c( 0.093662, 0.122130) # row 2 388s ) 388s 388s # Best Linear Unbiased Predictor: 388s #Vector: dim: 2 388s c( 2.031619, 2.968381) 388s # MSPE ([a]-[b]+[c]): 388s #Matrix: 2 by 2 388s rbind( 388s c( 0.929230, 0.457698), # row 1 388s c( 0.457698, 0.929230) # row 2 388s ) 388s 388s # kriging weights: 388s #Matrix: 4 by 2 388s rbind( 388s c( 0.308548, 0.191452), # row 1 388s c( 0.308548, 0.191452), # row 2 388s c( 0.191452, 0.308548), # row 3 388s c( 0.191452, 0.308548) # row 4 388s ) 388s 388s 388s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 388s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 388s > 388s > # Z1 and Z2 share a regression slope: 388s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 388s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 388s + merge=list(c("d1",2,"d2",2))) 388s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 388s > predict(g, data.frame(x=1,y=1), debug = 32) 388s Intrinsic Correlation found. Good. 388s [using universal cokriging] 388s we're at location X: 1 Y: 1 Z: 0 388s zero block size 388s we're at point X: 1 Y: 1 Z: 0 388s 388s # X: 388s #Matrix: 4 by 3 388s rbind( 388s c( 1.000000, 0.000000, 0.000000), # row 1 388s c( 1.000000, 2.000000, 0.000000), # row 2 388s c( 0.000000, 0.000000, 1.000000), # row 3 388s c( 0.000000, 2.000000, 1.000000) # row 4 388s ) 388s [using generalized covariances: max_val - semivariance()] 388s # Covariances (x_i, x_j) matrix C (upper triangle): 388s #Matrix: 4 by 4 388s rbind( 388s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 388s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 388s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 388s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 388s ) 388s 388s # glm->C, Choleski decomposed:: 388s #Matrix: 4 by 4 388s rbind( 388s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 388s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 388s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 388s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 388s ) 388s 388s # X'C-1 X: 388s #Matrix: 3 by 3 388s rbind( 388s c( 1.774607, 1.622645, -0.151962), # row 1 388s c( 1.622645, 7.676050, 1.622645), # row 2 388s c(-0.151962, 1.622645, 1.774607) # row 3 388s ) 388s 388s # beta: 388s #Vector: dim: 3 388s c( 0.000000, 0.500000, 4.000000) 388s # Cov(beta), (X'C-1 X)-1: 388s #Matrix: 3 by 3 388s rbind( 388s c( 0.793363, -0.225695, 0.274305), # row 1 388s c(-0.225695, 0.225695, -0.225695), # row 2 388s c( 0.274305, -0.225695, 0.793363) # row 3 388s ) 388s 388s # Corr(beta): 388s #Matrix: 3 by 3 388s rbind( 388s c( 1.000000, -0.533366, 0.345750), # row 1 388s c(-0.533366, 1.000000, -0.533366), # row 2 388s c( 0.345750, -0.533366, 1.000000) # row 3 388s ) 388s 388s # X0 (X values at prediction location x0): 388s #Matrix: 3 by 2 388s rbind( 388s c( 1.000000, 0.000000), # row 1 388s c( 1.000000, 1.000000), # row 2 388s c( 0.000000, 1.000000) # row 3 388s ) 388s 388s # BLUE(mu), E(y(x0)) = X0'beta: 388s #Vector: dim: 2 388s c( 0.500000, 4.500000) 388s # Covariances (x_i, x_0), C0: 388s #Matrix: 4 by 2 388s rbind( 388s c( 0.243117, 0.121558), # row 1 388s c( 0.243117, 0.121558), # row 2 388s c( 0.121558, 0.243117), # row 3 388s c( 0.121558, 0.243117) # row 4 388s ) 388s 388s # C-1 C0: 388s #Matrix: 4 by 2 388s rbind( 388s c( 0.206482, 0.089387), # row 1 388s c( 0.206482, 0.089387), # row 2 388s c( 0.089387, 0.206482), # row 3 388s c( 0.089387, 0.206482) # row 4 388s ) 388s 388s # [a] Cov_ij(B,B) or Cov_ij(0,0): 388s #Matrix: 2 by 2 388s rbind( 388s c( 1.000000, 0.500000), # row 1 388s c( 0.500000, 1.000000) # row 2 388s ) 388s 388s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 388s #Matrix: 2 by 2 388s rbind( 388s c( 0.203564, -0.100844), # row 1 388s c(-0.100844, 0.203564) # row 2 388s ) 388s 388s # [b] c0'C-1 c0: 388s #Matrix: 2 by 2 388s rbind( 388s c( 0.122130, 0.093662), # row 1 388s c( 0.093662, 0.122130) # row 2 388s ) 388s 388s # Best Linear Unbiased Predictor: 388s #Vector: dim: 2 388s c( 0.500000, 4.500000) 388s # MSPE ([a]-[b]+[c]): 388s #Matrix: 2 by 2 388s rbind( 388s c( 1.081434, 0.305494), # row 1 388s c( 0.305494, 1.081434) # row 2 388s ) 388s 388s # kriging weights: 388s #Matrix: 4 by 2 388s rbind( 388s c( 0.500000, 0.000000), # row 1 388s c( 0.500000, 0.000000), # row 2 388s c( 0.000000, 0.500000), # row 3 388s c( 0.000000, 0.500000) # row 4 388s ) 388s 388s 388s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 388s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 388s > 388s BEGIN TEST na.action.R 388s 388s R version 4.3.2 (2023-10-31) -- "Eye Holes" 388s Copyright (C) 2023 The R Foundation for Statistical Computing 388s Platform: aarch64-unknown-linux-gnu (64-bit) 388s 388s R is free software and comes with ABSOLUTELY NO WARRANTY. 388s You are welcome to redistribute it under certain conditions. 388s Type 'license()' or 'licence()' for distribution details. 388s 388s R is a collaborative project with many contributors. 388s Type 'contributors()' for more information and 388s 'citation()' on how to cite R or R packages in publications. 388s 388s Type 'demo()' for some demos, 'help()' for on-line help, or 388s 'help.start()' for an HTML browser interface to help. 388s Type 'q()' to quit R. 388s 388s > library(sp) 389s > 389s > data(meuse) 389s > data(meuse.grid) 389s > 389s > set.seed(13131) # reproduce results 389s > 389s > # select 10 random rows; 389s > # create two missing values in the coordinates: 389s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 389s > m[c(2,8), "x"] = NA 389s > 389s > library(gstat) 389s > ## this is not allowed anymore: 389s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 389s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 389s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 389s missing values in object 389s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 389s missing values in object 389s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 389s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 389s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 389s missing values in object 389s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 389s missing values in object 389s > 389s > # select 10 random rows; 389s > # create two missing values in the regressor variable: 389s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 389s > m[c(3,7), "dist"] = NA 389s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 389s [ordinary or weighted least squares prediction] 389s x y var1.pred var1.var 389s 1 178860 330860 6.530134 0.2415196 389s 2 180260 331860 5.389567 0.2406041 389s 3 180100 331860 NA NA 389s 4 180460 331820 5.213370 0.2417197 389s 5 179660 330580 5.550859 0.2398778 389s 6 179740 330300 6.108648 0.2395392 389s 7 180220 330660 NA NA 389s 8 178580 329820 6.533801 0.2415453 390s 9 180100 331900 5.580264 0.2397758 390s 10 180780 331900 5.095967 0.2426499 390s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 390s [ordinary or weighted least squares prediction] 390s x y var1.pred var1.var 390s 1877 178860 330860 6.530134 0.2415196 390s 1015 180260 331860 5.389567 0.2406041 390s 1056 180460 331820 5.213370 0.2417197 390s 2199 179660 330580 5.550859 0.2398778 390s 2556 179740 330300 6.108648 0.2395392 390s 2985 178580 329820 6.533801 0.2415453 390s 975 180100 331900 5.580264 0.2397758 390s 992 180780 331900 5.095967 0.2426499 390s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 390s [ordinary or weighted least squares prediction] 390s x y var1.pred var1.var 390s 1877 178860 330860 6.530134 0.2415196 390s 1015 180260 331860 5.389567 0.2406041 390s 1056 180460 331820 5.213370 0.2417197 390s 2199 179660 330580 5.550859 0.2398778 390s 2556 179740 330300 6.108648 0.2395392 390s 2985 178580 329820 6.533801 0.2415453 390s 975 180100 331900 5.580264 0.2397758 390s 992 180780 331900 5.095967 0.2426499 390s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 390s > 390s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 390s missing values in object 390s BEGIN TEST rings.R 390s 390s R version 4.3.2 (2023-10-31) -- "Eye Holes" 390s Copyright (C) 2023 The R Foundation for Statistical Computing 390s Platform: aarch64-unknown-linux-gnu (64-bit) 390s 390s R is free software and comes with ABSOLUTELY NO WARRANTY. 390s You are welcome to redistribute it under certain conditions. 390s Type 'license()' or 'licence()' for distribution details. 390s 390s R is a collaborative project with many contributors. 390s Type 'contributors()' for more information and 390s 'citation()' on how to cite R or R packages in publications. 390s 390s Type 'demo()' for some demos, 'help()' for on-line help, or 390s 'help.start()' for an HTML browser interface to help. 390s Type 'q()' to quit R. 390s 390s > library(sp) 390s > library(gstat) 390s > set.seed(13331) 390s > 390s > x = runif(10) 390s > y = runif(10) 390s > z = rnorm(10) 390s > d = data.frame(x=x,y=y,z=z) 390s > bl = c(1,1) 390s > 390s > nd = data.frame(x=.5, y=.5) 390s > 390s > # single block: 390s > library(sp) 390s > coordinates(d) = ~x+y 390s > nd = SpatialPoints(nd) 390s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 390s + set = list(nb=4)) 391s [using ordinary kriging] 391s > 391s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 391s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 391s > a = data.frame(a = 1, b = 2) 391s > rownames(a) = "xx" 391s > r1df = SpatialPolygonsDataFrame(r1, a) 391s > 391s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 391s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 391s > yy = predict(g, r1df, block = bl, sps.args = args) 391s [using ordinary kriging] 391s > 391s > xx = as.data.frame(xx) 391s > yy = as.data.frame(yy) 391s > row.names(xx) = row.names(yy) 391s > print(all.equal(xx,yy)) 391s [1] TRUE 391s > 391s > ## multiple blocks of equal size: 391s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 391s > nd = SpatialPoints(nd) 391s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 391s + set = list(nb=4)) 391s [using ordinary kriging] 391s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 391s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 391s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 391s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 391s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 391s > r1 = SpatialPolygons(list( 391s + Polygons(list(Polygon(ring0)), ID = "x0"), 391s + Polygons(list(Polygon(ring1)), ID = "x1"), 391s + Polygons(list(Polygon(ring2)), ID = "x2"), 391s + Polygons(list(Polygon(ring3)), ID = "x3"), 391s + Polygons(list(Polygon(ring4)), ID = "x4") 391s + )) 391s > df = data.frame(a=rep(1,5), b= rep(1,5)) 391s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 391s > r1df = SpatialPolygonsDataFrame(r1, df) 391s > 391s > yy = predict(g, r1, block = bl, sps.args = args) 391s [using ordinary kriging] 391s > xx = as.data.frame(xx) 391s > yy = as.data.frame(yy) 391s > row.names(xx) = row.names(yy) 391s > all.equal(xx, yy) 391s [1] TRUE 391s > 391s > ## multiple blocks of equal size: 391s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 391s > yy = predict(g, r1, block = bl, sps.args = args) 391s [using ordinary kriging] 391s > xx = as.data.frame(xx) 391s > yy = as.data.frame(yy) 391s > row.names(xx) = row.names(yy) 391s > print(all.equal(xx, yy)) 391s [1] TRUE 391s > 391s > ## multiple blocks of varying size: 391s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 391s > nd = SpatialPoints(nd) 391s > bl = c(1,1) 391s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 391s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 391s + set = list(nb=4)) 391s [using ordinary kriging] 391s > bl = c(2,2) 391s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 391s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 391s + set = list(nb=4)) 391s [using ordinary kriging] 391s > bl = c(3,3) 391s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 391s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 391s + set = list(nb=4)) 391s [using ordinary kriging] 391s > r1 = SpatialPolygons(list( 391s + Polygons(list(Polygon(ring0)), ID = "x0"), 391s + Polygons(list(Polygon(ring1)), ID = "x1"), 391s + Polygons(list(Polygon(ring2)), ID = "x2") 391s + )) 391s > df = data.frame(a = rep(1,3), b = rep(1,3)) 391s > rownames(df) = c("x0", "x1", "x2") 391s > r1df = SpatialPolygonsDataFrame(r1, df) 391s > 391s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 391s > yy = predict(g, r1df, block = bl, sps.args = args) 391s [using ordinary kriging] 391s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 391s > row.names(xx) = 1:3 391s > xx = as.data.frame(xx) 391s > yy = as.data.frame(yy) 391s > row.names(xx) = row.names(yy) 391s > print(all.equal(xx, yy)) 391s [1] TRUE 391s > 391s BEGIN TEST sim.R 391s 391s R version 4.3.2 (2023-10-31) -- "Eye Holes" 391s Copyright (C) 2023 The R Foundation for Statistical Computing 391s Platform: aarch64-unknown-linux-gnu (64-bit) 391s 391s R is free software and comes with ABSOLUTELY NO WARRANTY. 391s You are welcome to redistribute it under certain conditions. 391s Type 'license()' or 'licence()' for distribution details. 391s 391s R is a collaborative project with many contributors. 391s Type 'contributors()' for more information and 391s 'citation()' on how to cite R or R packages in publications. 391s 391s Type 'demo()' for some demos, 'help()' for on-line help, or 391s 'help.start()' for an HTML browser interface to help. 391s Type 'q()' to quit R. 391s 391s > options(digits=6) 391s > library(sp) 392s > data(meuse) 392s > set.seed(158229572) 392s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 392s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 392s > library(gstat) 392s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 392s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 392s + block = c(40,40), nmax = 40, nsim = 10) 392s drawing 10 GLS realisations of beta... 392s [using conditional Gaussian simulation] 392s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 392s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 393s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 393s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 393s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 393s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 393s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 393s sim8 sim9 sim10 393s 1 294.107 113.347 279.991 393s 2 776.498 724.160 901.692 393s 3 338.021 630.244 140.272 393s 4 127.301 957.242 444.007 393s 5 533.773 748.144 623.960 393s 6 1084.170 537.604 -214.972 393s > 393s BEGIN TEST stars.R 393s 393s R version 4.3.2 (2023-10-31) -- "Eye Holes" 393s Copyright (C) 2023 The R Foundation for Statistical Computing 393s Platform: aarch64-unknown-linux-gnu (64-bit) 393s 393s R is free software and comes with ABSOLUTELY NO WARRANTY. 393s You are welcome to redistribute it under certain conditions. 393s Type 'license()' or 'licence()' for distribution details. 393s 393s R is a collaborative project with many contributors. 393s Type 'contributors()' for more information and 393s 'citation()' on how to cite R or R packages in publications. 393s 393s Type 'demo()' for some demos, 'help()' for on-line help, or 393s 'help.start()' for an HTML browser interface to help. 393s Type 'q()' to quit R. 393s 393s > Sys.setenv(TZ = "UTC") 393s > 393s > # 0. using sp: 393s > 393s > suppressPackageStartupMessages(library(sp)) 393s > demo(meuse, ask = FALSE) 393s 393s 393s demo(meuse) 393s ---- ~~~~~ 393s 393s > require(sp) 393s 393s > crs = CRS("EPSG:28992") 393s 393s > data("meuse") 393s 393s > coordinates(meuse) <- ~x+y 393s 393s > proj4string(meuse) <- crs 393s 393s > data("meuse.grid") 393s 393s > coordinates(meuse.grid) <- ~x+y 393s 393s > gridded(meuse.grid) <- TRUE 393s 393s > proj4string(meuse.grid) <- crs 393s 393s > data("meuse.riv") 393s 393s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 393s 393s > proj4string(meuse.riv) <- crs 393s 393s > data("meuse.area") 393s 393s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 393s 393s > proj4string(meuse.area) <- crs 393s > suppressPackageStartupMessages(library(gstat)) 394s > v = variogram(log(zinc)~1, meuse) 394s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 394s model psill range 394s 1 Nug 0.05066243 0.0000 394s 2 Sph 0.59060780 897.0209 394s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 394s [using ordinary kriging] 394s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 394s [using ordinary kriging] 394s > 394s > # 1. using sf: 394s > suppressPackageStartupMessages(library(sf)) 394s Warning message: 394s package ‘sf’ was built under R version 4.3.3 394s > demo(meuse_sf, ask = FALSE, echo = FALSE) 394s > # reloads meuse as data.frame, so 394s > demo(meuse, ask = FALSE) 394s 394s 394s demo(meuse) 394s ---- ~~~~~ 394s 394s > require(sp) 394s 394s > crs = CRS("EPSG:28992") 394s 394s > data("meuse") 394s 394s > coordinates(meuse) <- ~x+y 394s 394s > proj4string(meuse) <- crs 394s 394s > data("meuse.grid") 394s 394s > coordinates(meuse.grid) <- ~x+y 394s 394s > gridded(meuse.grid) <- TRUE 394s 394s > proj4string(meuse.grid) <- crs 394s 394s > data("meuse.riv") 394s 394s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 394s 394s > proj4string(meuse.riv) <- crs 394s 394s > data("meuse.area") 394s 394s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 394s 394s > proj4string(meuse.area) <- crs 394s > 394s > v = variogram(log(zinc)~1, meuse_sf) 394s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 394s model psill range 394s 1 Nug 0.05066243 0.0000 394s 2 Sph 0.59060780 897.0209 394s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 394s [using ordinary kriging] 394s > 394s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 394s [1] TRUE 394s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 394s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 394s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 394s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 394s > 394s > # 2. using stars for grid: 394s > 394s > suppressPackageStartupMessages(library(stars)) 394s > st = st_as_stars(meuse.grid) 394s > st_crs(st) 394s Coordinate Reference System: 394s User input: Amersfoort / RD New 394s wkt: 394s PROJCRS["Amersfoort / RD New", 394s BASEGEOGCRS["Amersfoort", 394s DATUM["Amersfoort", 394s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 394s LENGTHUNIT["metre",1]]], 394s PRIMEM["Greenwich",0, 394s ANGLEUNIT["degree",0.0174532925199433]], 394s ID["EPSG",4289]], 394s CONVERSION["RD New", 394s METHOD["Oblique Stereographic", 394s ID["EPSG",9809]], 394s PARAMETER["Latitude of natural origin",52.1561605555556, 394s ANGLEUNIT["degree",0.0174532925199433], 394s ID["EPSG",8801]], 394s PARAMETER["Longitude of natural origin",5.38763888888889, 394s ANGLEUNIT["degree",0.0174532925199433], 394s ID["EPSG",8802]], 394s PARAMETER["Scale factor at natural origin",0.9999079, 394s SCALEUNIT["unity",1], 394s ID["EPSG",8805]], 394s PARAMETER["False easting",155000, 394s LENGTHUNIT["metre",1], 394s ID["EPSG",8806]], 394s PARAMETER["False northing",463000, 394s LENGTHUNIT["metre",1], 394s ID["EPSG",8807]]], 394s CS[Cartesian,2], 394s AXIS["easting (X)",east, 394s ORDER[1], 394s LENGTHUNIT["metre",1]], 394s AXIS["northing (Y)",north, 394s ORDER[2], 394s LENGTHUNIT["metre",1]], 394s USAGE[ 394s SCOPE["Engineering survey, topographic mapping."], 394s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 394s BBOX[50.75,3.2,53.7,7.22]], 394s ID["EPSG",28992]] 394s > 394s > # compare inputs: 394s > sp = as(st, "Spatial") 394s > fullgrid(meuse.grid) = TRUE 394s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 394s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 394s [2] "Names: 1 string mismatch" 394s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 394s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 394s [2] "Names: 1 string mismatch" 394s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 394s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 394s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 394s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 394s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 394s > 394s > # kriging: 394s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 394s > k_st = if (Sys.getenv("USER") == "travis") { 394s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 394s + } else { 394s + krige(log(zinc)~1, meuse_sf, st, v.fit) 394s + } 395s [using ordinary kriging] 395s > k_st 395s stars object with 2 dimensions and 2 attributes 395s attribute(s): 395s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 395s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 395s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 395s dimension(s): 395s from to offset delta x/y 395s x 1 78 178440 40 [x] 395s y 1 104 333760 -40 [y] 395s > 395s > # handle factors, when going to stars? 395s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 395s > st_as_stars(k_sp_grd) 395s stars object with 2 dimensions and 3 attributes 395s attribute(s): 395s var1.pred var1.var cls 395s Min. :4.777 Min. :0.085 (0,5]: 316 395s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 395s Median :5.573 Median :0.162 (6,7]: 962 395s Mean :5.707 Mean :0.185 (7,8]: 47 395s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 395s Max. :7.440 Max. :0.500 NA's :5009 395s NA's :5009 NA's :5009 395s dimension(s): 395s from to offset delta refsys x/y 395s x 1 78 178440 40 Amersfoort / RD New [x] 395s y 1 104 333760 -40 Amersfoort / RD New [y] 395s > if (require(raster, quietly = TRUE)) { 395s + print(st_as_stars(raster::stack(k_sp_grd))) # check 395s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 395s + } 399s stars object with 3 dimensions and 1 attribute 399s attribute(s): 399s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 399s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 399s dimension(s): 399s from to offset delta refsys values 399s x 1 78 178440 40 Amersfoort / RD New NULL 399s y 1 104 333760 -40 Amersfoort / RD New NULL 399s band 1 3 NA NA NA var1.pred, var1.var , cls 399s x/y 399s x [x] 399s y [y] 399s band 400s [1] TRUE 400s > 400s > suppressPackageStartupMessages(library(spacetime)) 400s > 400s > Sys.setenv(TZ="") 400s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 400s > n = 4 400s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 400s + stars:::create_dimensions(list( 400s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 400s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 400s + time = stars:::create_dimension(values = tm + 1:n)), 400s + raster = stars:::get_raster(dimensions = c("x", "y"))) 400s + ) 400s > s 400s stars object with 3 dimensions and 1 attribute 400s attribute(s): 400s Min. 1st Qu. Median Mean 3rd Qu. Max. 400s foo 1 16.75 32.5 32.5 48.25 64 400s dimension(s): 400s from to offset delta refsys x/y 400s x 1 4 10 0.5 NA [x] 400s y 1 4 0 -0.7 NA [y] 400s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 400s > 400s > as.data.frame(s) 400s x y time foo 400s 1 10.25 -0.35 2019-02-25 15:37:25 1 400s 2 10.75 -0.35 2019-02-25 15:37:25 2 400s 3 11.25 -0.35 2019-02-25 15:37:25 3 400s 4 11.75 -0.35 2019-02-25 15:37:25 4 400s 5 10.25 -1.05 2019-02-25 15:37:25 5 400s 6 10.75 -1.05 2019-02-25 15:37:25 6 400s 7 11.25 -1.05 2019-02-25 15:37:25 7 400s 8 11.75 -1.05 2019-02-25 15:37:25 8 400s 9 10.25 -1.75 2019-02-25 15:37:25 9 400s 10 10.75 -1.75 2019-02-25 15:37:25 10 400s 11 11.25 -1.75 2019-02-25 15:37:25 11 400s 12 11.75 -1.75 2019-02-25 15:37:25 12 400s 13 10.25 -2.45 2019-02-25 15:37:25 13 400s 14 10.75 -2.45 2019-02-25 15:37:25 14 400s 15 11.25 -2.45 2019-02-25 15:37:25 15 400s 16 11.75 -2.45 2019-02-25 15:37:25 16 400s 17 10.25 -0.35 2019-02-25 15:37:26 17 400s 18 10.75 -0.35 2019-02-25 15:37:26 18 400s 19 11.25 -0.35 2019-02-25 15:37:26 19 400s 20 11.75 -0.35 2019-02-25 15:37:26 20 400s 21 10.25 -1.05 2019-02-25 15:37:26 21 400s 22 10.75 -1.05 2019-02-25 15:37:26 22 400s 23 11.25 -1.05 2019-02-25 15:37:26 23 400s 24 11.75 -1.05 2019-02-25 15:37:26 24 400s 25 10.25 -1.75 2019-02-25 15:37:26 25 400s 26 10.75 -1.75 2019-02-25 15:37:26 26 400s 27 11.25 -1.75 2019-02-25 15:37:26 27 400s 28 11.75 -1.75 2019-02-25 15:37:26 28 400s 29 10.25 -2.45 2019-02-25 15:37:26 29 400s 30 10.75 -2.45 2019-02-25 15:37:26 30 400s 31 11.25 -2.45 2019-02-25 15:37:26 31 400s 32 11.75 -2.45 2019-02-25 15:37:26 32 400s 33 10.25 -0.35 2019-02-25 15:37:27 33 400s 34 10.75 -0.35 2019-02-25 15:37:27 34 400s 35 11.25 -0.35 2019-02-25 15:37:27 35 400s 36 11.75 -0.35 2019-02-25 15:37:27 36 400s 37 10.25 -1.05 2019-02-25 15:37:27 37 400s 38 10.75 -1.05 2019-02-25 15:37:27 38 400s 39 11.25 -1.05 2019-02-25 15:37:27 39 400s 40 11.75 -1.05 2019-02-25 15:37:27 40 400s 41 10.25 -1.75 2019-02-25 15:37:27 41 400s 42 10.75 -1.75 2019-02-25 15:37:27 42 400s 43 11.25 -1.75 2019-02-25 15:37:27 43 400s 44 11.75 -1.75 2019-02-25 15:37:27 44 400s 45 10.25 -2.45 2019-02-25 15:37:27 45 400s 46 10.75 -2.45 2019-02-25 15:37:27 46 400s 47 11.25 -2.45 2019-02-25 15:37:27 47 400s 48 11.75 -2.45 2019-02-25 15:37:27 48 400s 49 10.25 -0.35 2019-02-25 15:37:28 49 400s 50 10.75 -0.35 2019-02-25 15:37:28 50 400s 51 11.25 -0.35 2019-02-25 15:37:28 51 400s 52 11.75 -0.35 2019-02-25 15:37:28 52 400s 53 10.25 -1.05 2019-02-25 15:37:28 53 400s 54 10.75 -1.05 2019-02-25 15:37:28 54 400s 55 11.25 -1.05 2019-02-25 15:37:28 55 400s 56 11.75 -1.05 2019-02-25 15:37:28 56 400s 57 10.25 -1.75 2019-02-25 15:37:28 57 400s 58 10.75 -1.75 2019-02-25 15:37:28 58 400s 59 11.25 -1.75 2019-02-25 15:37:28 59 400s 60 11.75 -1.75 2019-02-25 15:37:28 60 400s 61 10.25 -2.45 2019-02-25 15:37:28 61 400s 62 10.75 -2.45 2019-02-25 15:37:28 62 400s 63 11.25 -2.45 2019-02-25 15:37:28 63 400s 64 11.75 -2.45 2019-02-25 15:37:28 64 400s > plot(s, col = sf.colors(), axes = TRUE) 400s > (s.stfdf = as(s, "STFDF")) 400s An object of class "STFDF" 400s Slot "data": 400s foo 400s 1 1 400s 2 2 400s 3 3 400s 4 4 400s 5 5 400s 6 6 400s 7 7 400s 8 8 400s 9 9 400s 10 10 400s 11 11 400s 12 12 400s 13 13 400s 14 14 400s 15 15 400s 16 16 400s 17 17 400s 18 18 400s 19 19 400s 20 20 400s 21 21 400s 22 22 400s 23 23 400s 24 24 400s 25 25 400s 26 26 400s 27 27 400s 28 28 400s 29 29 400s 30 30 400s 31 31 400s 32 32 400s 33 33 400s 34 34 400s 35 35 400s 36 36 400s 37 37 400s 38 38 400s 39 39 400s 40 40 400s 41 41 400s 42 42 400s 43 43 400s 44 44 400s 45 45 400s 46 46 400s 47 47 400s 48 48 400s 49 49 400s 50 50 400s 51 51 400s 52 52 400s 53 53 400s 54 54 400s 55 55 400s 56 56 400s 57 57 400s 58 58 400s 59 59 400s 60 60 400s 61 61 400s 62 62 400s 63 63 400s 64 64 400s 400s Slot "sp": 400s Object of class SpatialPixels 400s Grid topology: 400s cellcentre.offset cellsize cells.dim 400s x 10.25 0.5 4 400s y -2.45 0.7 4 400s SpatialPoints: 400s x y 400s [1,] 10.25 -0.35 400s [2,] 10.75 -0.35 400s [3,] 11.25 -0.35 400s [4,] 11.75 -0.35 400s [5,] 10.25 -1.05 400s [6,] 10.75 -1.05 400s [7,] 11.25 -1.05 400s [8,] 11.75 -1.05 400s [9,] 10.25 -1.75 400s [10,] 10.75 -1.75 400s [11,] 11.25 -1.75 400s [12,] 11.75 -1.75 400s [13,] 10.25 -2.45 400s [14,] 10.75 -2.45 400s [15,] 11.25 -2.45 400s [16,] 11.75 -2.45 400s Coordinate Reference System (CRS) arguments: NA 400s 400s Slot "time": 400s timeIndex 400s 2019-02-25 15:37:25 1 400s 2019-02-25 15:37:26 2 400s 2019-02-25 15:37:27 3 400s 2019-02-25 15:37:28 4 400s 400s Slot "endTime": 400s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 400s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 400s 400s > stplot(s.stfdf, scales = list(draw = TRUE)) 400s > 400s > (s2 = st_as_stars(s.stfdf)) 400s stars object with 3 dimensions and 1 attribute 400s attribute(s): 400s Min. 1st Qu. Median Mean 3rd Qu. Max. 400s foo 1 16.75 32.5 32.5 48.25 64 400s dimension(s): 400s from to offset delta refsys x/y 400s x 1 4 10 0.5 NA [x] 400s y 1 4 -1.11e-16 -0.7 NA [y] 400s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 400s > plot(s2, col = sf.colors(), axes = TRUE) 400s > all.equal(s, s2, check.attributes = FALSE) 400s [1] TRUE 400s > 400s > # multiple simulations: 400s > data(meuse, package = "sp") 400s > data(meuse.grid, package = "sp") 400s > coordinates(meuse.grid) <- ~x+y 400s > gridded(meuse.grid) <- TRUE 400s > meuse.grid = st_as_stars(meuse.grid) 400s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 400s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 400s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 400s > set.seed(123) 400s > (p = predict(g, meuse.grid, nsim = 5)) 400s drawing 5 multivariate GLS realisations of beta... 400s [using conditional Gaussian simulation] 400s stars object with 3 dimensions and 2 attributes 400s attribute(s): 400s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 400s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 400s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 400s dimension(s): 400s from to offset delta values x/y 400s x 1 78 178440 40 NULL [x] 400s y 1 104 333760 -40 NULL [y] 400s sample 1 5 NA NA sim1,...,sim5 400s > 400s BEGIN TEST unproj.R 400s 400s R version 4.3.2 (2023-10-31) -- "Eye Holes" 400s Copyright (C) 2023 The R Foundation for Statistical Computing 400s Platform: aarch64-unknown-linux-gnu (64-bit) 400s 400s R is free software and comes with ABSOLUTELY NO WARRANTY. 400s You are welcome to redistribute it under certain conditions. 400s Type 'license()' or 'licence()' for distribution details. 400s 400s R is a collaborative project with many contributors. 400s Type 'contributors()' for more information and 400s 'citation()' on how to cite R or R packages in publications. 400s 400s Type 'demo()' for some demos, 'help()' for on-line help, or 400s 'help.start()' for an HTML browser interface to help. 400s Type 'q()' to quit R. 400s 401s > # DOI 10.1007/s11004-011-9344-7 401s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 401s > 401s > suppressPackageStartupMessages(library(sp)) 401s > library(gstat) 401s > 401s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 401s + data(meuse) 401s + coordinates(meuse) = ~x+y 401s + proj4string(meuse) = CRS("+init=epsg:28992") 401s + ll = "+proj=longlat +ellps=WGS84" 401s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 401s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 401s + meuse.ll[1:10,] 401s + variogram(log(zinc)~1, meuse.ll) 401s + 401s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 401s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 401s + 401s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 401s + abline(0,1) 401s + 401s + data(ozone2) 401s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 401s + data.frame(t(ozone2$y)), 401s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 401s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 401s + utm16 = "+proj=utm +zone=16" 401s + # oz.utm = spTransform(oz, utm16) 401s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 401s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 401s + 401s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 401s + 401s + foo <- 401s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 401s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 401s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 401s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 401s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 401s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 401s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 401s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 401s + -11L), class = "data.frame") 401s + 401s + coordinates(foo) <- ~lon+lat 401s + 401s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 401s + 401s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 401s + 401s + cat('==========\nvariogram:\n') 401s + print(head(vg.foo)) 401s + 401s + cat('==========\nspDistsN1 Distances:\n') 401s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 401s + } 402s Spam version 2.10-0 (2023-10-23) is loaded. 402s Type 'help( Spam)' or 'demo( spam)' for a short introduction 402s and overview of this package. 402s Help for individual functions is also obtained by adding the 402s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 402s 402s Attaching package: ‘spam’ 402s 402s The following objects are masked from ‘package:base’: 402s 402s backsolve, forwardsolve 402s 402s 402s Try help(fields) to get started. 402s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE 402s ========== 402s variogram: 402s dist gamma dir.hor dir.ver id left right 402s 1 3115.1190 8.971063e-04 0 0 var1 2 1 402s 2 1908.0468 1.909846e+01 0 0 var1 3 1 402s 3 1405.6211Warning messages: 402s 1: package ‘sf’ was built under R version 4.3.3 402s 2: In CPL_crs_from_input(x) : 402s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 402s 1.883757e+01 0 0 var1 3 2 402s 4 1837.5667 1.347749e+01 0 0 var1 4 1 402s 5 1522.8765 1.325847e+01 0 0 var1 4 2 402s 6 119.9386 4.886139e-01 0 0 var1 4 3 402s ========== 402s spDistsN1 Distances: 402s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 402s [8] 3081.7541 4090.4022 665.9348 2683.1516 402s > 403s BEGIN TEST variogram.R 403s 403s R version 4.3.2 (2023-10-31) -- "Eye Holes" 403s Copyright (C) 2023 The R Foundation for Statistical Computing 403s Platform: aarch64-unknown-linux-gnu (64-bit) 403s 403s R is free software and comes with ABSOLUTELY NO WARRANTY. 403s You are welcome to redistribute it under certain conditions. 403s Type 'license()' or 'licence()' for distribution details. 403s 403s R is a collaborative project with many contributors. 403s Type 'contributors()' for more information and 403s 'citation()' on how to cite R or R packages in publications. 403s 403s Type 'demo()' for some demos, 'help()' for on-line help, or 403s 'help.start()' for an HTML browser interface to help. 403s Type 'q()' to quit R. 403s 403s > library(sp) 403s > library(gstat) 403s > data(meuse) 403s > variogram(log(zinc)~1, ~x+y, meuse) 404s np dist gamma dir.hor dir.ver id 404s 1 57 79.29244 0.1234479 0 0 var1 404s 2 299 163.97367 0.2162185 0 0 var1 404s 3 419 267.36483 0.3027859 0 0 var1 404s 4 457 372.73542 0.4121448 0 0 var1 404s 5 547 478.47670 0.4634128 0 0 var1 404s 6 533 585.34058 0.5646933 0 0 var1 404s 7 574 693.14526 0.5689683 0 0 var1 404s 8 564 796.18365 0.6186769 0 0 var1 404s 9 589 903.14650 0.6471479 0 0 var1 404s 10 543 1011.29177 0.6915705 0 0 var1 404s 11 500 1117.86235 0.7033984 0 0 var1 404s 12 477 1221.32810 0.6038770 0 0 var1 404s 13 452 1329.16407 0.6517158 0 0 var1 404s 14 457 1437.25620 0.5665318 0 0 var1 404s 15 415 1543.20248 0.5748227 0 0 var1 404s > 404s > coordinates(meuse) <- ~ x + y 404s > variogram(log(zinc)~1, meuse) 404s np dist gamma dir.hor dir.ver id 404s 1 57 79.29244 0.1234479 0 0 var1 404s 2 299 163.97367 0.2162185 0 0 var1 404s 3 419 267.36483 0.3027859 0 0 var1 404s 4 457 372.73542 0.4121448 0 0 var1 404s 5 547 478.47670 0.4634128 0 0 var1 404s 6 533 585.34058 0.5646933 0 0 var1 404s 7 574 693.14526 0.5689683 0 0 var1 404s 8 564 796.18365 0.6186769 0 0 var1 404s 9 589 903.14650 0.6471479 0 0 var1 404s 10 543 1011.29177 0.6915705 0 0 var1 404s 11 500 1117.86235 0.7033984 0 0 var1 404s 12 477 1221.32810 0.6038770 0 0 var1 404s 13 452 1329.16407 0.6517158 0 0 var1 404s 14 457 1437.25620 0.5665318 0 0 var1 404s 15 415 1543.20248 0.5748227 0 0 var1 404s > 404s > ind=seq(1,155,2) 404s > var1= meuse[ind,] 404s > var2= meuse[-ind,] 404s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 404s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 404s > v.cross <- variogram(g) 404s > plot(v.cross) 404s > 404s > 404s BEGIN TEST vdist.R 404s 404s R version 4.3.2 (2023-10-31) -- "Eye Holes" 404s Copyright (C) 2023 The R Foundation for Statistical Computing 404s Platform: aarch64-unknown-linux-gnu (64-bit) 404s 404s R is free software and comes with ABSOLUTELY NO WARRANTY. 404s You are welcome to redistribute it under certain conditions. 404s Type 'license()' or 'licence()' for distribution details. 404s 404s R is a collaborative project with many contributors. 404s Type 'contributors()' for more information and 404s 'citation()' on how to cite R or R packages in publications. 404s 404s Type 'demo()' for some demos, 'help()' for on-line help, or 404s 'help.start()' for an HTML browser interface to help. 404s Type 'q()' to quit R. 404s 404s > library(sp) 404s > library(gstat) 405s > 405s > data(meuse) 405s > coordinates(meuse) = ~x+y 405s > data(meuse.grid) 405s > gridded(meuse.grid) = ~x+y 405s > 405s > mg = meuse.grid 405s > gridded(mg) = FALSE 405s > mg= mg[1500,] 405s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 405s + vdist=FALSE, maxdist=1000,nmax=10) 405s [using ordinary kriging] 405s coordinates var1.pred var1.var 405s 1500 (180260, 331300) 5.007376 1.102622 405s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 405s + vdist=TRUE, maxdist=1000,nmax=10) 405s [using ordinary kriging] 405s coordinates var1.pred var1.var 405s 1500 (180260, 331300) 5.50671 1.100095 405s > 405s autopkgtest [02:22:03]: test run-unit-test: -----------------------] 406s autopkgtest [02:22:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 406s run-unit-test PASS 406s autopkgtest [02:22:04]: test pkg-r-autopkgtest: preparing testbed 408s Reading package lists... 408s Building dependency tree... 408s Reading state information... 409s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 409s Starting 2 pkgProblemResolver with broken count: 0 409s Done 409s Done 409s Starting pkgProblemResolver with broken count: 0 410s Starting 2 pkgProblemResolver with broken count: 0 410s Done 410s The following additional packages will be installed: 410s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 410s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 410s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 410s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 410s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 410s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 410s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 410s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 410s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 410s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 410s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 410s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate r-cran-cli 410s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 410s r-cran-glue r-cran-hms r-cran-lifecycle r-cran-pkgconfig r-cran-prettyunits 410s r-cran-progress r-cran-r6 r-cran-rappdirs r-cran-stringi r-cran-vctrs 410s r-cran-withr rpcsvc-proto zlib1g-dev 410s Suggested packages: 410s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 410s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 410s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 410s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 410s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 410s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 410s texlive-latex-recommended texlive-latex-extra texinfo r-cran-knitr 410s r-cran-rmarkdown r-cran-doparallel r-cran-foreach r-cran-parallelmap 410s r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi gridengine-client 410s slurm-client r-cran-lubridate r-cran-covr r-cran-testthat r-cran-roxygen2 410s r-cran-callr 410s Recommended packages: 410s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-cran-testthat 410s r-cran-base64enc r-cran-openssl r-cran-ranger r-cran-fastmatch 410s r-cran-devtools r-cran-ggplot2 r-cran-knitr r-cran-rmarkdown r-cran-tinytest 410s r-cran-tibble r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets 410s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi 410s r-cran-whoami r-cran-bit64 r-cran-bit r-cran-curl r-cran-r.utils 410s r-cran-nanotime r-cran-yaml r-cran-pillar r-cran-spelling r-cran-markdown 410s r-cran-r.rsp r-cran-dplyr r-cran-rsqlite r-cran-waldo r-cran-lintr 410s r-cran-tidyverse r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot 410s The following NEW packages will be installed: 410s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 410s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 410s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 410s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 410s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 410s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 410s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 410s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 410s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 410s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 410s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 410s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate r-cran-cli 410s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 410s r-cran-glue r-cran-hms r-cran-lifecycle r-cran-pkgconfig r-cran-prettyunits 410s r-cran-progress r-cran-r6 r-cran-rappdirs r-cran-stringi r-cran-vctrs 410s r-cran-withr rpcsvc-proto zlib1g-dev 410s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. 410s 1 not fully installed or removed. 410s Need to get 101 MB of archives. 410s After this operation, 358 MB of additional disk space will be used. 410s Get:1 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 411s Get:2 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64url arm64 1.4-2build1 [26.4 kB] 411s Get:3 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 411s Get:4 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 411s Get:5 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 411s Get:6 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 411s Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 411s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 411s Get:9 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 411s Get:10 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 411s Get:11 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 411s Get:12 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 411s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 411s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 411s Get:15 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 411s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 411s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 411s Get:18 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 411s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 411s Get:20 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-batchtools arm64 0.9.17+dfsg-1 [712 kB] 411s Get:21 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 411s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 411s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 411s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 411s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 411s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 411s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 411s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 411s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 411s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 411s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 411s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 412s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 412s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 412s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 412s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 412s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 412s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 412s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 412s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 412s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 412s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 412s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 412s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 412s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 412s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 412s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 412s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 412s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 412s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 413s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 413s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 413s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 413s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 413s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 413s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 413s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 413s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 413s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 413s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 413s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 413s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 413s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 413s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 413s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 413s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 413s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 413s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 413s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 413s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 413s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu1 [894 kB] 413s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 413s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 413s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 413s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 413s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 414s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 414s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 414s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 414s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 414s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 414s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 414s Fetched 101 MB in 3s (31.5 MB/s) 414s Selecting previously unselected package r-cran-backports. 415s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80664 files and directories currently installed.) 415s Preparing to unpack .../00-r-cran-backports_1.4.1-1_arm64.deb ... 415s Unpacking r-cran-backports (1.4.1-1) ... 415s Selecting previously unselected package r-cran-base64url. 415s Preparing to unpack .../01-r-cran-base64url_1.4-2build1_arm64.deb ... 415s Unpacking r-cran-base64url (1.4-2build1) ... 415s Selecting previously unselected package r-cran-brew. 415s Preparing to unpack .../02-r-cran-brew_1.0-10-1_all.deb ... 415s Unpacking r-cran-brew (1.0-10-1) ... 415s Selecting previously unselected package r-cran-checkmate. 415s Preparing to unpack .../03-r-cran-checkmate_2.3.1-1_arm64.deb ... 415s Unpacking r-cran-checkmate (2.3.1-1) ... 415s Selecting previously unselected package r-cran-data.table. 415s Preparing to unpack .../04-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 415s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 415s Selecting previously unselected package r-cran-fs. 415s Preparing to unpack .../05-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 415s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 415s Selecting previously unselected package r-cran-crayon. 415s Preparing to unpack .../06-r-cran-crayon_1.5.2-1_all.deb ... 415s Unpacking r-cran-crayon (1.5.2-1) ... 415s Selecting previously unselected package r-cran-cli. 415s Preparing to unpack .../07-r-cran-cli_3.6.2-1_arm64.deb ... 415s Unpacking r-cran-cli (3.6.2-1) ... 415s Selecting previously unselected package r-cran-glue. 415s Preparing to unpack .../08-r-cran-glue_1.7.0-1_arm64.deb ... 415s Unpacking r-cran-glue (1.7.0-1) ... 415s Selecting previously unselected package r-cran-lifecycle. 415s Preparing to unpack .../09-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 415s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 415s Selecting previously unselected package r-cran-pkgconfig. 415s Preparing to unpack .../10-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 415s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 415s Selecting previously unselected package r-cran-vctrs. 415s Preparing to unpack .../11-r-cran-vctrs_0.6.5-1_arm64.deb ... 415s Unpacking r-cran-vctrs (0.6.5-1) ... 415s Selecting previously unselected package r-cran-hms. 415s Preparing to unpack .../12-r-cran-hms_1.1.3-1_all.deb ... 415s Unpacking r-cran-hms (1.1.3-1) ... 415s Selecting previously unselected package r-cran-prettyunits. 415s Preparing to unpack .../13-r-cran-prettyunits_1.2.0-1_all.deb ... 415s Unpacking r-cran-prettyunits (1.2.0-1) ... 415s Selecting previously unselected package r-cran-r6. 415s Preparing to unpack .../14-r-cran-r6_2.5.1-1_all.deb ... 415s Unpacking r-cran-r6 (2.5.1-1) ... 415s Selecting previously unselected package r-cran-progress. 415s Preparing to unpack .../15-r-cran-progress_1.2.3-1_all.deb ... 415s Unpacking r-cran-progress (1.2.3-1) ... 415s Selecting previously unselected package r-cran-rappdirs. 415s Preparing to unpack .../16-r-cran-rappdirs_0.3.3-1_arm64.deb ... 415s Unpacking r-cran-rappdirs (0.3.3-1) ... 415s Selecting previously unselected package r-cran-stringi. 415s Preparing to unpack .../17-r-cran-stringi_1.8.3-1_arm64.deb ... 415s Unpacking r-cran-stringi (1.8.3-1) ... 415s Selecting previously unselected package r-cran-withr. 415s Preparing to unpack .../18-r-cran-withr_2.5.0-1_all.deb ... 415s Unpacking r-cran-withr (2.5.0-1) ... 415s Selecting previously unselected package r-cran-batchtools. 415s Preparing to unpack .../19-r-cran-batchtools_0.9.17+dfsg-1_arm64.deb ... 415s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 415s Selecting previously unselected package r-cran-future.batchtools. 415s Preparing to unpack .../20-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 415s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 416s Selecting previously unselected package dctrl-tools. 416s Preparing to unpack .../21-dctrl-tools_2.24-3build2_arm64.deb ... 416s Unpacking dctrl-tools (2.24-3build2) ... 416s Selecting previously unselected package libc-dev-bin. 416s Preparing to unpack .../22-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 416s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 416s Selecting previously unselected package linux-libc-dev:arm64. 416s Preparing to unpack .../23-linux-libc-dev_6.8.0-11.11_arm64.deb ... 416s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 416s Selecting previously unselected package libcrypt-dev:arm64. 416s Preparing to unpack .../24-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 416s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 416s Selecting previously unselected package libtirpc-dev:arm64. 416s Preparing to unpack .../25-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 416s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 416s Selecting previously unselected package libnsl-dev:arm64. 416s Preparing to unpack .../26-libnsl-dev_1.3.0-3_arm64.deb ... 416s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 416s Selecting previously unselected package rpcsvc-proto. 416s Preparing to unpack .../27-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 416s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 416s Selecting previously unselected package libc6-dev:arm64. 416s Preparing to unpack .../28-libc6-dev_2.39-0ubuntu2_arm64.deb ... 416s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 416s Selecting previously unselected package libisl23:arm64. 416s Preparing to unpack .../29-libisl23_0.26-3_arm64.deb ... 416s Unpacking libisl23:arm64 (0.26-3) ... 416s Selecting previously unselected package libmpc3:arm64. 416s Preparing to unpack .../30-libmpc3_1.3.1-1_arm64.deb ... 416s Unpacking libmpc3:arm64 (1.3.1-1) ... 416s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 416s Preparing to unpack .../31-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 416s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 416s Selecting previously unselected package cpp-13. 416s Preparing to unpack .../32-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 416s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 416s Selecting previously unselected package cpp-aarch64-linux-gnu. 416s Preparing to unpack .../33-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 416s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 416s Selecting previously unselected package cpp. 416s Preparing to unpack .../34-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 417s Unpacking cpp (4:13.2.0-7ubuntu1) ... 417s Selecting previously unselected package libcc1-0:arm64. 417s Preparing to unpack .../35-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 417s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 417s Selecting previously unselected package libitm1:arm64. 417s Preparing to unpack .../36-libitm1_14-20240303-1ubuntu1_arm64.deb ... 417s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 417s Selecting previously unselected package libatomic1:arm64. 417s Preparing to unpack .../37-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 417s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 417s Selecting previously unselected package libasan8:arm64. 417s Preparing to unpack .../38-libasan8_14-20240303-1ubuntu1_arm64.deb ... 417s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 417s Selecting previously unselected package liblsan0:arm64. 417s Preparing to unpack .../39-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 417s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 417s Selecting previously unselected package libtsan2:arm64. 417s Preparing to unpack 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unpack .../45-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 418s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 418s Selecting previously unselected package gcc-aarch64-linux-gnu. 418s Preparing to unpack .../46-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 418s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 418s Selecting previously unselected package gcc. 418s Preparing to unpack .../47-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 418s Unpacking gcc (4:13.2.0-7ubuntu1) ... 418s Selecting previously unselected package libstdc++-13-dev:arm64. 418s Preparing to unpack .../48-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 418s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 418s Selecting previously unselected package g++-13-aarch64-linux-gnu. 418s Preparing to unpack .../49-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 418s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 418s Selecting previously unselected package g++-13. 418s Preparing to unpack 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Setting up r-cran-crayon (1.5.2-1) ... 420s Setting up libmpc3:arm64 (1.3.1-1) ... 420s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 420s Setting up icu-devtools (74.2-1ubuntu1) ... 420s Setting up pkgconf-bin (1.8.1-2) ... 420s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 420s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 420s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 420s Setting up libnsl-dev:arm64 (1.3.0-3) ... 420s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 420s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 420s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 420s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 420s Setting up r-cran-r6 (2.5.1-1) ... 420s Setting up libisl23:arm64 (0.26-3) ... 420s Setting up libc-dev-bin (2.39-0ubuntu2) ... 420s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 420s Setting up r-cran-vctrs (0.6.5-1) ... 420s Setting up r-cran-rappdirs (0.3.3-1) ... 420s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 420s Setting up libblas-dev:arm64 (3.12.0-3) ... 420s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 420s Setting up dctrl-tools (2.24-3build2) ... 420s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 420s Setting up r-cran-base64url (1.4-2build1) ... 420s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 420s Setting up pkgconf:arm64 (1.8.1-2) ... 420s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Setting up r-cran-hms (1.1.3-1) ... 420s Setting up liblapack-dev:arm64 (3.12.0-3) ... 420s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 420s Setting up pkg-config:arm64 (1.8.1-2) ... 420s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 420s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 420s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 420s Setting up r-cran-progress (1.2.3-1) ... 420s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 420s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 420s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 420s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 420s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 420s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 420s Setting up cpp-13 (13.2.0-17ubuntu2) ... 420s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 420s Setting up libreadline-dev:arm64 (8.2-3) ... 420s Setting up gcc-13 (13.2.0-17ubuntu2) ... 420s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 420s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 420s Setting up cpp (4:13.2.0-7ubuntu1) ... 420s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 420s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 420s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Setting up g++-13 (13.2.0-17ubuntu2) ... 420s Setting up libpng-dev:arm64 (1.6.43-3) ... 420s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 420s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 420s Setting up gcc (4:13.2.0-7ubuntu1) ... 420s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 420s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 420s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 420s Setting up gfortran (4:13.2.0-7ubuntu1) ... 420s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 420s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 420s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 420s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 420s Setting up g++ (4:13.2.0-7ubuntu1) ... 420s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 420s Setting up build-essential (12.10ubuntu1) ... 420s Setting up r-base-dev (4.3.2-1build1) ... 420s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 420s Setting up autopkgtest-satdep (0) ... 420s Processing triggers for man-db (2.12.0-3) ... 421s Processing triggers for install-info (7.1-3) ... 421s Processing triggers for libc-bin (2.39-0ubuntu2) ... 424s (Reading database ... 85939 files and directories currently installed.) 424s Removing autopkgtest-satdep (0) ... 425s autopkgtest [02:22:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 425s autopkgtest [02:22:23]: test pkg-r-autopkgtest: [----------------------- 425s Test: Try to load the R library gstat 425s 425s R version 4.3.2 (2023-10-31) -- "Eye Holes" 425s Copyright (C) 2023 The R Foundation for Statistical Computing 425s Platform: aarch64-unknown-linux-gnu (64-bit) 425s 425s R is free software and comes with ABSOLUTELY NO WARRANTY. 425s You are welcome to redistribute it under certain conditions. 425s Type 'license()' or 'licence()' for distribution details. 425s 425s R is a collaborative project with many contributors. 425s Type 'contributors()' for more information and 425s 'citation()' on how to cite R or R packages in publications. 425s 425s Type 'demo()' for some demos, 'help()' for on-line help, or 425s 'help.start()' for an HTML browser interface to help. 425s Type 'q()' to quit R. 425s 425s > library('gstat') 426s > 426s > 426s Other tests are currently unsupported! 426s They will be progressively added. 426s autopkgtest [02:22:24]: test pkg-r-autopkgtest: -----------------------] 427s pkg-r-autopkgtest PASS 427s autopkgtest [02:22:25]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 427s autopkgtest [02:22:25]: @@@@@@@@@@@@@@@@@@@@ summary 427s run-unit-test PASS 427s pkg-r-autopkgtest PASS 438s Creating nova instance adt-noble-arm64-r-cran-gstat-20240313-021518-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240312.img (UUID c534cdfe-c0b7-48c4-b4bf-7376b15156d5)...