0s autopkgtest [18:27:26]: starting date and time: 2024-03-16 18:27:26+0000 0s autopkgtest [18:27:26]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:27:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yi31mk13/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-exactranktests --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-17.secgroup --name adt-noble-arm64-r-cran-exactranktests-20240316-182726-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 153s autopkgtest [18:29:59]: testbed dpkg architecture: arm64 153s autopkgtest [18:29:59]: testbed apt version: 2.7.12 153s autopkgtest [18:29:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 153s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 154s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 154s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 154s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 154s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 154s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 154s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 154s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 154s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 154s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 154s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 154s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 154s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 156s Fetched 9084 kB in 2s (5239 kB/s) 156s Reading package lists... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s Calculating upgrade... 160s The following packages will be REMOVED: 160s libglib2.0-0 libssl3 160s The following NEW packages will be installed: 160s libglib2.0-0t64 libssl3t64 xdg-user-dirs 160s The following packages have been kept back: 160s curl 160s The following packages will be upgraded: 160s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 160s ubuntu-minimal ubuntu-standard 161s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 161s Need to get 4613 kB of archives. 161s After this operation, 211 kB of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 161s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 161s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 161s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 161s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 161s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 161s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 161s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 162s Fetched 4613 kB in 1s (6256 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 162s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 163s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 163s udisks2 depends on libglib2.0-0 (>= 2.77.0). 163s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 163s python3-gi depends on libglib2.0-0 (>= 2.77.0). 163s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 163s netplan.io depends on libglib2.0-0 (>= 2.70.0). 163s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 163s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 163s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 163s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 163s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 163s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 163s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 163s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 163s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 163s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 163s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 163s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 163s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 163s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 163s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 163s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 163s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 163s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 163s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 163s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 163s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 163s fwupd depends on libglib2.0-0 (>= 2.79.0). 163s bolt depends on libglib2.0-0 (>= 2.56.0). 163s 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 163s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 163s Selecting previously unselected package libglib2.0-0t64:arm64. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 163s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 163s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 163s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 163s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 163s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 163s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 163s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 163s wget depends on libssl3 (>= 3.0.0). 163s u-boot-tools depends on libssl3 (>= 3.0.0). 163s tnftp depends on libssl3 (>= 3.0.0). 163s tcpdump depends on libssl3 (>= 3.0.0). 163s systemd-resolved depends on libssl3 (>= 3.0.0). 163s systemd depends on libssl3 (>= 3.0.0). 163s sudo depends on libssl3 (>= 3.0.0). 163s sbsigntool depends on libssl3 (>= 3.0.0). 163s rsync depends on libssl3 (>= 3.0.0). 163s python3-cryptography depends on libssl3 (>= 3.0.0). 163s openssh-server depends on libssl3 (>= 3.0.10). 163s openssh-client depends on libssl3 (>= 3.0.10). 163s mtd-utils depends on libssl3 (>= 3.0.0). 163s mokutil depends on libssl3 (>= 3.0.0). 163s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 163s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 163s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 163s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 163s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 163s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 163s libnvme1 depends on libssl3 (>= 3.0.0). 163s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 163s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 163s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 163s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 163s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 163s kmod depends on libssl3 (>= 3.0.0). 163s dhcpcd-base depends on libssl3 (>= 3.0.0). 163s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 163s 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 163s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 163s Selecting previously unselected package libssl3t64:arm64. 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 163s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 163s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 163s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 163s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 163s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 163s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 163s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 163s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 163s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 163s Unpacking ubuntu-minimal (1.536) over (1.535) ... 163s Selecting previously unselected package xdg-user-dirs. 163s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 163s Unpacking xdg-user-dirs (0.18-1) ... 163s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 163s Unpacking ubuntu-standard (1.536) over (1.535) ... 163s Setting up ubuntu-minimal (1.536) ... 163s Setting up xdg-user-dirs (0.18-1) ... 163s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 163s Setting up libtirpc-common (1.3.4+ds-1.1) ... 163s Setting up ubuntu-standard (1.536) ... 163s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 164s No schema files found: doing nothing. 164s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 164s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 164s Setting up openssl (3.0.13-0ubuntu1) ... 164s Setting up readline-common (8.2-3.1) ... 164s Processing triggers for man-db (2.12.0-3) ... 164s Processing triggers for install-info (7.1-3) ... 164s Processing triggers for libc-bin (2.39-0ubuntu2) ... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 166s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 166s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 166s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 166s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 166s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 168s Reading package lists... 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s Calculating upgrade... 169s The following packages have been kept back: 169s curl 169s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 173s autopkgtest [18:30:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 173s autopkgtest [18:30:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-exactranktests 175s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-exactranktests 0.8-35-1 (dsc) [2154 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-exactranktests 0.8-35-1 (tar) [46.9 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-exactranktests 0.8-35-1 (diff) [2716 B] 175s gpgv: Signature made Fri Apr 29 09:05:46 2022 UTC 175s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 175s gpgv: issuer "tille@debian.org" 175s gpgv: Can't check signature: No public key 175s dpkg-source: warning: cannot verify inline signature for ./r-cran-exactranktests_0.8-35-1.dsc: no acceptable signature found 175s autopkgtest [18:30:21]: testing package r-cran-exactranktests version 0.8-35-1 175s autopkgtest [18:30:21]: build not needed 177s autopkgtest [18:30:23]: test run-unit-test: preparing testbed 178s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 180s The following additional packages will be installed: 180s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 180s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 180s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 180s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 180s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 180s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 180s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 180s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 180s r-cran-exactranktests unzip x11-common xdg-utils zip 180s Suggested packages: 180s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 180s r-cran-survival 180s Recommended packages: 180s r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl 180s libx11-protocol-perl x11-utils x11-xserver-utils 180s The following packages will be REMOVED: 180s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 180s The following NEW packages will be installed: 180s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 180s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 180s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 180s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 180s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 180s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 180s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 180s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 180s r-cran-exactranktests unzip x11-common xdg-utils zip 180s The following packages will be upgraded: 180s curl 180s 1 upgraded, 51 newly installed, 5 to remove and 0 not upgraded. 180s Need to get 37.8 MB/37.8 MB of archives. 180s After this operation, 75.6 MB of additional disk space will be used. 180s Get:1 /tmp/autopkgtest.OnmSxC/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 180s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 180s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 180s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 180s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 180s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 180s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 180s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 180s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 180s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 180s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 180s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 180s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 180s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 180s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 180s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 180s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 181s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 181s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 181s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 181s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 181s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 181s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 181s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 181s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 181s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 181s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 181s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 181s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 181s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 181s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 181s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 181s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 181s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 181s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 181s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 181s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 181s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 181s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 181s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 181s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 181s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 181s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 181s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 181s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 181s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 181s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 181s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 181s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 181s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 181s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 182s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-exactranktests arm64 0.8-35-1 [163 kB] 182s Preconfiguring packages ... 182s Fetched 37.8 MB in 2s (22.0 MB/s) 182s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 182s wget depends on libpsl5 (>= 0.16.0). 182s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 182s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 182s 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 182s Removing libpsl5:arm64 (0.21.2-1build1) ... 182s Selecting previously unselected package libpsl5t64:arm64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 183s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 183s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 183s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 183s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 183s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 183s Selecting previously unselected package libcurl4t64:arm64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 183s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 183s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 183s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 183s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 183s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 183s 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 183s Removing libpng16-16:arm64 (1.6.43-1) ... 183s Selecting previously unselected package libpng16-16t64:arm64. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 183s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 183s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 183s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 183s parted depends on libreadline8 (>= 6.0). 183s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 183s gpgsm depends on libreadline8 (>= 6.0). 183s gpgconf depends on libreadline8 (>= 6.0). 183s gpg depends on libreadline8 (>= 6.0). 183s gawk depends on libreadline8 (>= 6.0). 183s fdisk depends on libreadline8 (>= 6.0). 183s 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 183s Removing libreadline8:arm64 (8.2-3) ... 184s Selecting previously unselected package libreadline8t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 184s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 184s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 184s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 184s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 184s lsof depends on libtirpc3 (>= 1.0.2). 184s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 184s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 184s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 184s iproute2 depends on libtirpc3 (>= 1.0.2). 184s 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 184s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 184s Selecting previously unselected package libtirpc3t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 184s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 184s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 184s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 185s Selecting previously unselected package fonts-dejavu-mono. 185s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 185s Unpacking fonts-dejavu-mono (2.37-8) ... 185s Selecting previously unselected package fonts-dejavu-core. 185s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 185s Unpacking fonts-dejavu-core (2.37-8) ... 185s Selecting previously unselected package fontconfig-config. 185s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 185s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 186s Selecting previously unselected package libfontconfig1:arm64. 186s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 186s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 186s Selecting previously unselected package fontconfig. 186s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 186s Unpacking fontconfig (2.15.0-1ubuntu1) ... 186s Selecting previously unselected package libblas3:arm64. 186s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 186s Unpacking libblas3:arm64 (3.12.0-3) ... 186s Selecting previously unselected package libpixman-1-0:arm64. 186s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 186s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 186s Selecting previously unselected package libxcb-render0:arm64. 186s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 186s Unpacking libxcb-render0:arm64 (1.15-1) ... 186s Selecting previously unselected package libxcb-shm0:arm64. 186s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 186s Unpacking libxcb-shm0:arm64 (1.15-1) ... 186s Selecting previously unselected package libxrender1:arm64. 186s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 186s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 187s Selecting previously unselected package libcairo2:arm64. 187s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 187s Unpacking libcairo2:arm64 (1.18.0-1) ... 187s Selecting previously unselected package libdatrie1:arm64. 187s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 187s Unpacking libdatrie1:arm64 (0.2.13-3) ... 187s Selecting previously unselected package libdeflate0:arm64. 187s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 187s Unpacking libdeflate0:arm64 (1.19-1) ... 187s Selecting previously unselected package libgfortran5:arm64. 187s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 187s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 187s Selecting previously unselected package libgomp1:arm64. 187s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 187s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 187s Selecting previously unselected package libgraphite2-3:arm64. 187s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 187s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 187s Selecting previously unselected package libharfbuzz0b:arm64. 187s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_arm64.deb ... 187s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 187s Selecting previously unselected package x11-common. 187s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu2_all.deb ... 187s Unpacking x11-common (1:7.7+23ubuntu2) ... 187s Selecting previously unselected package libice6:arm64. 187s Preparing to unpack .../19-libice6_2%3a1.0.10-1build2_arm64.deb ... 187s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 188s Selecting previously unselected package libjpeg-turbo8:arm64. 188s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 188s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 188s Selecting previously unselected package libjpeg8:arm64. 188s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_arm64.deb ... 188s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 188s Selecting previously unselected package liblapack3:arm64. 188s Preparing to unpack .../22-liblapack3_3.12.0-3_arm64.deb ... 188s Unpacking liblapack3:arm64 (3.12.0-3) ... 188s Selecting previously unselected package liblerc4:arm64. 188s Preparing to unpack .../23-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 188s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 188s Selecting previously unselected package libthai-data. 188s Preparing to unpack .../24-libthai-data_0.1.29-2_all.deb ... 188s Unpacking libthai-data (0.1.29-2) ... 188s Selecting previously unselected package libthai0:arm64. 188s Preparing to unpack .../25-libthai0_0.1.29-2_arm64.deb ... 188s Unpacking libthai0:arm64 (0.1.29-2) ... 188s Selecting previously unselected package libpango-1.0-0:arm64. 188s Preparing to unpack .../26-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 188s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 188s Selecting previously unselected package libpangoft2-1.0-0:arm64. 188s Preparing to unpack .../27-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 188s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 188s Selecting previously unselected package libpangocairo-1.0-0:arm64. 188s Preparing to unpack .../28-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 188s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 188s Selecting previously unselected package libpaper1:arm64. 188s Preparing to unpack .../29-libpaper1_1.1.29_arm64.deb ... 188s Unpacking libpaper1:arm64 (1.1.29) ... 188s Selecting previously unselected package libpaper-utils. 188s Preparing to unpack .../30-libpaper-utils_1.1.29_arm64.deb ... 188s Unpacking libpaper-utils (1.1.29) ... 188s Selecting previously unselected package libsharpyuv0:arm64. 188s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_arm64.deb ... 188s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 188s Selecting previously unselected package libsm6:arm64. 188s Preparing to unpack .../32-libsm6_2%3a1.2.3-1build2_arm64.deb ... 188s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 188s Selecting previously unselected package libtcl8.6:arm64. 188s Preparing to unpack .../33-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 188s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 188s Selecting previously unselected package libjbig0:arm64. 188s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 188s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 188s Selecting previously unselected package libwebp7:arm64. 188s Preparing to unpack .../35-libwebp7_1.3.2-0.4_arm64.deb ... 188s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 188s Selecting previously unselected package libtiff6:arm64. 188s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 188s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 189s Selecting previously unselected package libxft2:arm64. 189s Preparing to unpack .../37-libxft2_2.3.6-1_arm64.deb ... 189s Unpacking libxft2:arm64 (2.3.6-1) ... 189s Selecting previously unselected package libxss1:arm64. 189s Preparing to unpack .../38-libxss1_1%3a1.2.3-1build2_arm64.deb ... 189s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 189s Selecting previously unselected package libtk8.6:arm64. 189s Preparing to unpack .../39-libtk8.6_8.6.13-2_arm64.deb ... 189s Unpacking libtk8.6:arm64 (8.6.13-2) ... 189s Selecting previously unselected package libxt6t64:arm64. 189s Preparing to unpack .../40-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 189s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 189s Selecting previously unselected package zip. 189s Preparing to unpack .../41-zip_3.0-13_arm64.deb ... 189s Unpacking zip (3.0-13) ... 189s Selecting previously unselected package unzip. 189s Preparing to unpack .../42-unzip_6.0-28ubuntu3_arm64.deb ... 189s Unpacking unzip (6.0-28ubuntu3) ... 189s Selecting previously unselected package xdg-utils. 189s Preparing to unpack .../43-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 189s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 189s Selecting previously unselected package r-base-core. 189s Preparing to unpack .../44-r-base-core_4.3.3-2build1_arm64.deb ... 189s Unpacking r-base-core (4.3.3-2build1) ... 189s Selecting previously unselected package r-cran-exactranktests. 189s Preparing to unpack .../45-r-cran-exactranktests_0.8-35-1_arm64.deb ... 189s Unpacking r-cran-exactranktests (0.8-35-1) ... 189s Selecting previously unselected package autopkgtest-satdep. 189s Preparing to unpack .../46-1-autopkgtest-satdep.deb ... 189s Unpacking autopkgtest-satdep (0) ... 189s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 189s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 189s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 189s Setting up libpaper1:arm64 (1.1.29) ... 190s 190s Creating config file /etc/papersize with new version 190s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 190s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 190s Setting up libdatrie1:arm64 (0.2.13-3) ... 190s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 190s Setting up libxcb-render0:arm64 (1.15-1) ... 190s Setting up unzip (6.0-28ubuntu3) ... 190s Setting up x11-common 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[----------------------- 200s BEGIN TEST bugfix-tests.R 200s 200s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 200s Copyright (C) 2024 The R Foundation for Statistical Computing 200s Platform: aarch64-unknown-linux-gnu (64-bit) 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > 200s > library("exactRankTests") 200s Package ‘exactRankTests’ is no longer under development. 200s Please consider using package ‘coin’ instead. 200s 200s > 200s > # From Ruggero Bellio 200s > # 20.02.2002 200s > # and 23.07.2002 200s > 200s > x <- c(0,87, 0, 0, 0, 0, 8, 0,16, 0,64, 0, 0,37, 200, 0,0,32, 5 ,0, 0,14, 0, 200s + 0, 4, 0, 0,50, 0, 0,99, 0, 0,12,36,22, 4,13, 0,10,70, 0, 0, 0, 0,19, 200s + 0, 4, 3, 4,23, 0, 0, 0,0, 0, 0 ,14, 4, 8, 0,11,42, 0, 0, 0, 0, 0,18, 200s + 11,29, 0, 0) 200s > 200s > y <- c(0, 0,14, 0, 0,16, 0, 145, 0, 0,16, 0, 0,47, 0, 0,0, 144, 0 , 2, 0,13, 200s + 0, 0, 114, 0, 6, 0, 0, 4, 9, 0, 0,17, 0,0,42, 0 , 0, 0, 0, 0, 0, 0,25, 200s + 0, 1, 178, 0, 0, 0, 6, 0,7,76, 252, 0 , 0,23, 0, 0,68, 0, 0, 0,24, 0, 200s + 59, 0, 0, 0, 0,16) 200s > 200s > wilcox.exact(x, y, paired=TRUE, conf.int=TRUE) # was broken 200s 200s Exact Wilcoxon signed rank test 200s 200s data: x and y 200s V = 559, p-value = 0.9603 200s alternative hypothesis: true mu is not equal to 0 200s 95 percent confidence interval: 200s -13.5 10.5 200s sample estimates: 200s (pseudo)median 200s -0.25 200s 200s > 200s > p1 <- wilcox.exact(x, y, paired=TRUE, alternative="g", mu=-50)$p.value 200s > p2 <- wilcox.exact(x, y, paired=TRUE, alternative="l", mu=-50)$p.value 200s > p <- p1 + p2 200s > names(p) <- NULL 200s > 200s > stopifnot(all.equal(p, 1)) 200s > 200s > p1 <- perm.test(x, y, paired=TRUE, alternative="g")$p.value 200s > p2 <- perm.test(x, y, paired=TRUE, alternative="l")$p.value 200s > p <- p1 + p2 200s > names(p) <- NULL 200s > 200s > stopifnot(all.equal(p, 1)) 200s > 200s > # From Achim Zeileis 200s > # 15.04.2002 200s > 200s > ramsay <- c(111, 107, 100, 99, 102, 106, 109, 108, 200s + 104, 99, 101, 96, 97, 102, 107, 113, 116, 113, 110, 98) 200s > jung.parekh <- c(107, 108, 106, 98, 105, 103, 110, 105, 200s + 104, 100, 96, 108, 103, 104, 114, 114, 113, 108, 106, 99) 200s > scores <- rank(c(ramsay, jung.parekh)) 200s > scores <- pmin(scores, length(ramsay) + length(jung.parekh) - scores + 1) 200s > AB <- sum(scores[seq(along = ramsay)]) 200s > pperm(AB, scores, length(ramsay), alternative = "two.sided") 200s [1] 0.1880644 200s > perm.test(scores[1:20], scores[21:40]) 200s 200s 2-sample Permutation Test (scores mapped into 1:(m+n) using rounded 200s scores) 200s 200s data: scores[1:20] and scores[21:40] 200s T = 358, p-value = 0.1878 200s alternative hypothesis: true mu is not equal to 0 200s 200s > 200s > # dperm was broken for some configurations of paired samples 200s > 200s > ret <- c() 200s > for (i in 1:100) 200s + ret <- c(ret,dperm(-(1:10), sample(1:20, 5), 5)) 200s > stopifnot(sum(ret) == 0) 200s > 200s > try(dperm(0, c(0,-1,2,2), m=4)) 200s > 200s > # missing values to the default method `perm.test.default' 200s > # spotted by Claus Ekstroem 200s > # 18.09.2003 200s Error in equiscores(scores, m, tol, fact, simulate) : 200s scores must be positive 200s > x <- c(1, 2, 3, 4, NA) 200s > y <- c(1, 2, 1, 2, 3) 200s > perm.test(x,y, paired=TRUE) 200s 200s 1-sample Permutation Test 200s 200s data: x and y 200s T = 4, p-value = 0.5 200s alternative hypothesis: true mu is not equal to 0 200s 200s > 200s > # now fixed: This was a problem when defining two-sided P-values for discrete 200s > # distributions; the statistic was equal to the expectation (coin deals with this). 200s > # spotted by Dieter Menne 200s > pperm(5, 1:4, 4, alt = "two.sided") 200s [1] 1 200s > 200s > # mu was ignored, spotted by 200s > x <- c(28,39,66,75,59,33,45,108,110,81,77,34,80,69,72) 200s > stopifnot(all.equal(perm.test(x, mu = 60)$p.value, 200s + perm.test(x - 60, mu = 0)$p.value)) 200s > 200s > 200s BEGIN TEST dtest.R 200s 200s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 200s Copyright (C) 2024 The R Foundation for Statistical Computing 200s Platform: aarch64-unknown-linux-gnu (64-bit) 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > 200s > library("exactRankTests") 200s Package ‘exactRankTests’ is no longer under development. 200s Please consider using package ‘coin’ instead. 200s 200s > suppressWarnings(RNGversion("3.5.3")) 200s > set.seed(29081975) 200s > 200s > # test the distribution functions 200s > 200s > # paired observations 200s > 200s > hansi <- c() 200s > seppl <- c() 200s > for (i in 1:10) 200s + { 200s + m <- sample(10:50, 1) 200s + score <- sample(m) 200s + val <- sample(0:m, 1) 200s + # cat("m: ", m, "n: ", n, " val: ", val, "\n") 200s + hansi <- c(hansi, psignrank(val, m)) 200s + cat("psignrank: ", hansi[length(hansi)]) 200s + seppl <- c(seppl, pperm(val, score, m, alternative="less")) 200s + cat(" pperm: ", seppl[length(seppl)], "\n") 200s + } 200s psignrank: 0.001220703 pperm: 0.001220703 200s psignrank: 1.639128e-06 pperm: 1.639128e-06 200s psignrank: 7.247925e-05 pperm: 7.247925e-05 200s psignrank: 1.135468e-05 pperm: 1.135468e-05 200s psignrank: 1.001172e-08 pperm: 1.001172e-08 200s psignrank: 1.818989e-11 pperm: 1.818989e-11 200s psignrank: 7.363269e-09 pperm: 7.363269e-09 200s psignrank: 3.015995e-05 pperm: 3.015995e-05 200s psignrank: 2.467632e-05 pperm: 2.467632e-05 200s psignrank: 2.395524e-10 pperm: 2.395524e-10 200s > 200s > stopifnot(max(abs(hansi - seppl)) <= 1e-10) 200s > 200s > hansi <- c() 200s > seppl <- c() 200s > for (i in 1:10) 200s + { 200s + m <- sample(10:50, 1) 200s + score <- sample(m) 200s + prob <- runif(1) 200s + # cat("m: ", m, "n: ", n, " prob: ", prob, "\n") 200s + hansi <- c(hansi, qsignrank(prob, m)) 200s + cat("qwilcox: ", hansi[length(hansi)]) 200s + seppl <- c(seppl, qperm(prob, score, m)) 200s + cat(" qperm: ", seppl[length(seppl)], "\n") 200s + } 200s qwilcox: 163 qperm: 163 200s qwilcox: 129 qperm: 129 200s qwilcox: 51 qperm: 51 200s qwilcox: 181 qperm: 181 200s qwilcox: 120 qperm: 120 200s qwilcox: 150 qperm: 150 200s qwilcox: 527 qperm: 527 200s qwilcox: 78 qperm: 78 200s qwilcox: 292 qperm: 292 200s qwilcox: 758 qperm: 758 200s > 200s > stopifnot(max(abs(hansi - seppl)) <= 1e-10) 200s > 200s > # independent observations 200s > 200s > hansi <- c() 200s > seppl <- c() 200s > for (i in 1:10) 200s + { 200s + m <- sample(10:50, 1) 200s + if (runif(1) < 0.5) 200s + n <- sample(10:50, 1) 200s + else 200s + n <- m 200s + score <- sample(n+m) 200s + val <- sample(0:(m*n), 1) 200s + # cat("m: ", m, "n: ", n, " val: ", val, "\n") 200s + hansi <- c(hansi, pwilcox(val, m, n)) 200s + cat("pwilcox: ", hansi[length(hansi)]) 200s + seppl <- c(seppl, pperm(val + m*(m+1)/2, score, m, 200s + alternative="less")) 200s + cat(" pperm: ", seppl[length(seppl)], "\n") 200s + } 200s pwilcox: 0.9945908 pperm: 0.9945908 200s pwilcox: 3.948461e-07 pperm: 3.948461e-07 200s pwilcox: 1 pperm: 1 200s pwilcox: 0.9944071 pperm: 0.9944071 201s pwilcox: 0.006576638 pperm: 0.006576638 201s pwilcox: 0.0008109143 pperm: 0.0008109143 201s pwilcox: 7.587138e-06 pperm: 7.587138e-06 201s pwilcox: 1 pperm: 1 201s pwilcox: 0.9999999 pperm: 0.9999999 201s pwilcox: 0.6188446 pperm: 0.6188446 201s > 201s > stopifnot(max(abs(hansi - seppl)) <= 1e-10) 201s > 201s > hansi <- c() 201s > seppl <- c() 201s > for (i in 1:10) 201s + { 201s + m <- sample(10:50, 1) 201s + if (runif(1) < 0.5) 201s + n <- sample(10:50, 1) 201s + else 201s + n <- m 201s + score <- sample(n+m) 201s + prob <- runif(1) 201s + # cat("m: ", m, "n: ", n, " prob: ", prob, "\n") 201s + hansi <- c(hansi, qwilcox(prob, m, n)) 201s + cat("qwilcox: ", hansi[length(hansi)]) 201s + seppl <- c(seppl, qperm(prob, score, m) - m*(m+1)/2) 201s + cat(" qperm: ", seppl[length(seppl)], "\n") 201s + } 201s qwilcox: 469 qperm: 469 201s qwilcox: 352 qperm: 352 201s qwilcox: 401 qperm: 401 201s qwilcox: 71 qperm: 71 201s qwilcox: 348 qperm: 348 201s qwilcox: 87 qperm: 87 201s qwilcox: 430 qperm: 430 201s qwilcox: 373 qperm: 373 201s qwilcox: 714 qperm: 714 201s qwilcox: 340 qperm: 340 201s > 201s > stopifnot(max(abs(hansi - seppl)) <= 1e-10) 201s > 201s > for (i in 1:20) { 201s + x <- rnorm(10) 201s + y <- rnorm(10) 201s + group <- factor(c(rep(0, 10), rep(1, 10))) 201s + stopifnot(all.equal(wilcox.test(x,y)$p.value, wilcox.exact(x,y)$p.value)) 201s + stopifnot(all.equal(wilcox.test(y)$p.value, wilcox.exact(y)$p.value)) 201s + r <- rank(c(x,y)) 201s + stopifnot(all.equal(wilcox.test(r ~ group)$p.value, 201s + perm.test(r ~ group)$p.value)) 201s + } 201s > 201s > 201s > if (FALSE) { 201s + dansari <- function(x, m ,n) 201s + { 201s + .C(dansari, as.integer(length(x)), d = as.double(x), as.integer(m), 201s + as.integer(n))$d 201s + } 201s + 201s + # Ansari-Bradley 201s + 201s + n <- 10 201s + x <- rnorm(n, 2, 1) 201s + y <- rnorm(n, 2, 2) 201s + 201s + # exact distribution using Streitberg-Roehmel 201s + 201s + sc <- cscores(c(x,y), type="Ansari") 201s + dabexac <- dperm(0:(n*(2*n+1)/2), sc, n) 201s + sum(dabexac) 201s + tr <- which(dabexac > 0) 201s + 201s + # exact distribution using dansari (wrapper to ansari.c in ctest) 201s + 201s + dab <- dansari(0:(n*(2*n+1)/2), n, n) 201s + 201s + # compare the two distributions: 201s + 201s + stopifnot(all.equal(max(abs(dab[tr] - dabexac[tr])), 0)) 201s + 201s + } 201s > 201s BEGIN TEST reg-tests.R 201s 201s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 201s Copyright (C) 2024 The R Foundation for Statistical Computing 201s Platform: aarch64-unknown-linux-gnu (64-bit) 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 201s > 201s > require("exactRankTests") 201s Loading required package: exactRankTests 201s Package ‘exactRankTests’ is no longer under development. 201s Please consider using package ‘coin’ instead. 201s 201s > suppressWarnings(RNGversion("3.5.3")) 201s > set.seed(29081975) 201s > 201s > # 201s > # Regression tests 201s > # 201s > 201s > # Blood Pressure data: Results from StatXact 5 (demo version) 201s > 201s > data(bloodp) 201s > # bloodp$group <- factor(c(rep("Behandlung", 4), rep("Kontrolle", 11))) 201s > 201s > we <- wilcox.exact(bp ~ group, data=bloodp, conf.int=TRUE) 201s > we 201s 201s Exact Wilcoxon rank sum test 201s 201s data: bp by group 201s W = 35, p-value = 0.0989 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -4 22 201s sample estimates: 201s difference in location 201s 9.5 201s 201s > stopifnot(round(we$p.value,4) == 0.0989) 201s > stopifnot(we$conf.int[1] == -4) 201s > stopifnot(we$conf.int[2] == 22) 201s > stopifnot(we$conf.estimate == 9.5) 201s > 201s > we <- wilcox.exact(bp ~ group, data=bloodp, conf.int=TRUE, exact=FALSE) 201s > we 201s 201s Asymptotic Wilcoxon rank sum test 201s 201s data: bp by group 201s W = 35, p-value = 0.08535 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -4.143776e-05 2.000007e+01 201s sample estimates: 201s difference in location 201s 9.790799 201s 201s > stopifnot(round(we$p.value,4) == 0.0853) 201s > 201s > we <- wilcox.exact(bp ~ group, data=bloodp, alternative="greater", conf.int=TRUE) 201s > stopifnot(round(we$p.value,4) == 0.0542) 201s > 201s > 201s > pt <- perm.test(bp ~ group, data=bloodp) 201s > pt 201s 201s 2-sample Permutation Test 201s 201s data: bp by group 201s T = 402, p-value = 0.104 201s alternative hypothesis: true mu is not equal to 0 201s 201s > stopifnot(round(pt$p.value, 4) == 0.1040) 201s > 201s > pt <- perm.test(bp ~ group, data=bloodp, alternative="greater") 201s > pt 201s 201s 2-sample Permutation Test 201s 201s data: bp by group 201s T = 402, p-value = 0.05641 201s alternative hypothesis: true mu is greater than 0 201s 201s > stopifnot(round(pt$p.value, 4) == 0.0564) 201s > 201s > pt <- perm.test(bp ~ group, data=bloodp, exact=FALSE) 201s > pt 201s 201s Asymptotic 2-sample Permutation Test 201s 201s data: bp by group 201s T = 402, p-value = 0.107 201s alternative hypothesis: true mu is not equal to 0 201s 201s > stopifnot(round(pt$p.value, 4) == 0.1070) 201s > 201s > sc <- cscores(bloodp$bp, type="NormalQuantile") 201s > X <- sum(sc[bloodp$group == "group2"]) 201s > stopifnot(round(pperm(X, sc, 11), 4) == 0.0462) 201s > stopifnot(round(pperm(X, sc, 11, alternative="two.sided"), 4) == 0.0799) 201s > 201s > # use scores mapped into integers 201s > 201s > sc <- cscores(bloodp$bp, type="NormalQuantile", int=TRUE) 201s > X <- sum(sc[bloodp$group == "group2"]) 201s > stopifnot(round(pperm(X, sc, 11), 4) == 0.0462) 201s > stopifnot(round(pperm(X, sc, 11, alternative="two.sided"), 4) == 0.0799) 201s > 201s > # Equality of wilcox.test in package ctest and wilcox.exact 201s > 201s > x <- c(1.83, 0.50, 1.62, 2.48, 1.68, 1.88, 1.55, 3.06, 1.30) 201s > y <- c(0.878, 0.647, 0.598, 2.05, 1.06, 1.29, 1.06, 3.14, 1.29) 201s > 201s > wt <- wilcox.test(y-x) 201s > we <- wilcox.exact(y -x) 201s > wt 201s 201s Wilcoxon signed rank exact test 201s 201s data: y - x 201s V = 5, p-value = 0.03906 201s alternative hypothesis: true location is not equal to 0 201s 201s > we 201s 201s Exact Wilcoxon signed rank test 201s 201s data: y - x 201s V = 5, p-value = 0.03906 201s alternative hypothesis: true mu is not equal to 0 201s 201s > stopifnot(wt$p.value == we$p.value) 201s > 201s > x <- c(0.80, 0.83, 1.89, 1.04, 1.45, 1.38, 1.91, 1.64, 0.73, 1.46) 201s > y <- c(1.15, 0.88, 0.90, 0.74, 1.21) 201s > we <- wilcox.exact(x, y, alternative = "g") # greater 201s > wt <- wilcox.test(x, y, alternative = "g") 201s > stopifnot(we$p.value == wt$p.value) 201s > stopifnot(all(we$conf.int == wt$conf.int)) 201s > 201s > x <- rnorm(10) 201s > y <- rnorm(10, 2) 201s > wilcox.exact(x, y, conf.int = TRUE) 201s 201s Exact Wilcoxon rank sum test 201s 201s data: x and y 201s W = 13, p-value = 0.003886 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -2.6984506 -0.5996612 201s sample estimates: 201s difference in location 201s -2.07512 201s 201s > 201s > if (!any(duplicated(c(x,y)))) { 201s + we <- wilcox.exact(x, y, conf.int = TRUE) 201s + print(we) 201s + wt <- wilcox.test(x, y, conf.int = TRUE) 201s + print(wt) 201s + we$pointprob <- NULL 201s + we$method <- NULL 201s + we$null.value <- NULL 201s + wt$parameter <- NULL 201s + wt$method <- NULL 201s + wt$null.value <- NULL 201s + stopifnot(all.equal(wt, we)) 201s + we <- wilcox.exact(x, conf.int = TRUE) 201s + print(we) 201s + wt <- wilcox.test(x, conf.int = TRUE) 201s + print(wt) 201s + we$pointprob <- NULL 201s + we$method <- NULL 201s + we$null.value <- NULL 201s + wt$parameter <- NULL 201s + wt$method <- NULL 201s + wt$null.value <- NULL 201s + stopifnot(all.equal(wt, we)) 201s + } 201s 201s Exact Wilcoxon rank sum test 201s 201s data: x and y 201s W = 13, p-value = 0.003886 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -2.6984506 -0.5996612 201s sample estimates: 201s difference in location 201s -2.07512 201s 201s 201s Wilcoxon rank sum exact test 201s 201s data: x and y 201s W = 13, p-value = 0.003886 201s alternative hypothesis: true location shift is not equal to 0 201s 95 percent confidence interval: 201s -2.6984506 -0.5996612 201s sample estimates: 201s difference in location 201s -2.07512 201s 201s 201s Exact Wilcoxon signed rank test 201s 201s data: x 201s V = 17, p-value = 0.3223 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -0.9374751 0.7638509 201s sample estimates: 201s (pseudo)median 201s -0.3968314 201s 201s 201s Wilcoxon signed rank exact test 201s 201s data: x 201s V = 17, p-value = 0.3223 201s alternative hypothesis: true location is not equal to 0 201s 95 percent confidence interval: 201s -0.9374751 0.7638509 201s sample estimates: 201s (pseudo)median 201s -0.3968314 201s 201s > 201s > 201s > # Hollander & Wolfe (1999), second edition, Example 4.2., page 112 201s > 201s > contr <- c(1042, 1617, 1180, 973, 1552, 1251, 1151, 728, 1079, 951, 1319) 201s > SST <- c(874, 389, 612, 798, 1152, 893, 541, 741, 1064, 862, 213) 201s > 201s > wilcox.exact(contr, SST, conf.int=TRUE) 201s 201s Exact Wilcoxon rank sum test 201s 201s data: contr and SST 201s W = 106, p-value = 0.00186 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s 168 690 201s sample estimates: 201s difference in location 201s 410 201s 201s > 201s > # page 110, Example 4.1 201s > 201s > term <- c(0.8, 0.83, 1.89, 1.04, 1.45, 1.38, 1.91, 1.64, 0.73, 1.46) 201s > weeks <- c(1.15, 0.88, 0.90, 0.74, 1.21) 201s > 201s > wilcox.exact(weeks, term, conf.int=TRUE) 201s 201s Exact Wilcoxon rank sum test 201s 201s data: weeks and term 201s W = 15, p-value = 0.2544 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -0.76 0.15 201s sample estimates: 201s difference in location 201s -0.305 201s 201s > 201s > 201s > # Hollander & Wolfe, p. 39, results p. 40 and p. 53 201s > 201s > x <- c(1.83, 0.50, 1.62, 2.48, 1.68, 1.88, 1.55, 3.06, 1.30) 201s > y <- c(0.878, 0.647, 0.598, 2.05, 1.06, 1.29, 1.06, 3.14, 1.29) 201s > 201s > we <- wilcox.exact(y,x, paired=TRUE, conf.int=TRUE) 201s > we 201s 201s Exact Wilcoxon signed rank test 201s 201s data: y and x 201s V = 5, p-value = 0.03906 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -0.786 -0.010 201s sample estimates: 201s (pseudo)median 201s -0.46 201s 201s > 201s > stopifnot(round(we$p.value,4) == 0.0391) 201s > stopifnot(round(we$conf.int,3) == c(-0.786, -0.010)) 201s > stopifnot(round(we$estimate,3) == -0.46) 201s > 201s > # Hollander & Wolfe, p. 110, results p. 111 and p. 126 201s > 201s > x <- c(0.8, 0.83, 1.89, 1.04, 1.45, 1.38, 1.91, 1.64, 0.73, 1.46) 201s > y <- c(1.15, 0.88, 0.90, 0.74, 1.21) 201s > 201s > we <- wilcox.exact(y,x, conf.int=TRUE) 201s > we 201s 201s Exact Wilcoxon rank sum test 201s 201s data: y and x 201s W = 15, p-value = 0.2544 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -0.76 0.15 201s sample estimates: 201s difference in location 201s -0.305 201s 201s > stopifnot(round(we$p.value,4) == 0.2544) 201s > stopifnot(round(we$conf.int,3) == c(-0.76, 0.15)) 201s > stopifnot(round(we$estimate,3) == -0.305) 201s > 201s > wel <- wilcox.exact(y,x, conf.int=TRUE, alternative="less") 201s > weg <- wilcox.exact(y,x, conf.int=TRUE, alternative="greater") 201s > 201s > stopifnot(we$estimate == wel$estimate & we$estimate == weg$estimate) 201s > stopifnot(we$conf.int[1] <= weg$conf.int[1] & 201s + we$conf.int[2] >= wel$conf.int[2]) 201s > 201s > # just kidding 201s > 201s > stopifnot(wilcox.exact(1:8)$p.value == 0.0078125) 201s > stopifnot(wilcox.exact(c(1:7,7))$p.value == 0.0078125) 201s > stopifnot(wilcox.exact(c(1,1,1))$p.value == 0.25) 201s > 201s > x <- rnorm(10) 201s > y <- rnorm(10) 201s > stopifnot(wilcox.test(x,y,conf.int=TRUE)$estimate == 201s + wilcox.exact(x,y,conf.int=TRUE)$estimate) 201s > stopifnot(wilcox.test(x,conf.int=TRUE)$estimate == 201s + wilcox.exact(x,conf.int=TRUE)$estimate) 201s > 201s > 201s > # permutation test: AIDS data 201s > 201s > diff <- c(-149, 51, 0, 126, -106, -20, 0, -52, -292, 0, -103, 0, -84, -89, 201s + -159, -404, -500, -259, -14, -2600) 201s > 201s > # p-values in StatXact == 0.0011 one-sided, 0.0021 two.sided, page 183 201s > 201s > stopifnot(round(perm.test(diff)$p.value, 4) == 0.0021) 201s > stopifnot(round(perm.test(diff, alternative="less")$p.value,4) == 0.0011) 201s > pt <- perm.test(diff, exact=FALSE) 201s > stopifnot(round(pt$p.value, 4) == 0.0878) 201s > 201s > # permutation test: binary data 201s > # Example from Gardner & Altman (1989), p. 30 201s > # two treatments A and B, 1 means improvement, 0 means no improvement 201s > # confidence sets cf. R\"ohmel (1996) 201s > 201s > A <- c(rep(1, 61), rep(0, 19)) 201s > B <- c(rep(1, 45), rep(0, 35)) 201s > pt <- perm.test(A, B, conf.int=TRUE, exact=TRUE) 201s > pt 201s 201s 2-sample Permutation Test 201s 201s data: A and B 201s T = 61, p-value = 0.0118 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s 0.05263158 0.34285714 201s 201s > stopifnot(round(pt$conf.int, 4) == c(0.0526, 0.3429)) 201s > 201s > # real response 201s > data(globulin) 201s > pt <- perm.test(gfrac ~ group, data=globulin, conf.int=TRUE) 201s > pt 201s 201s 2-sample Permutation Test 201s 201s data: gfrac by group 201s T = 331, p-value = 0.1475 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s -8.50 1.25 201s 201s > stopifnot(pt$conf.int == c(-8.50, 1.25)) 201s > 201s > # Bergmann Benchmark 201s > data(rotarod) 201s > stopifnot(round(wilcox.exact(time ~ group, data=rotarod, 201s + alternative="g")$p.value, 4) == 0.0186) 201s > stopifnot(round(wilcox.exact(time ~ group, data=rotarod, 201s + conf.int=TRUE)$p.value, 4) == 0.0373) 201s > stopifnot(round(wilcox.exact(time ~ group, data=rotarod, 201s + exact=FALSE)$p.value, 4) == 0.0147) 201s > 201s > # Conover scores 201s > 201s > data(neuropathy) 201s > # compare with Table 2 of Conover & Salsburg (1988) 201s > wilcox.exact(pain ~ group, data=neuropathy, alternative="less") 201s 201s Exact Wilcoxon rank sum test 201s 201s data: pain by group 201s W = 357, p-value = 0.1654 201s alternative hypothesis: true mu is less than 0 201s 201s > css <- cscores(neuropathy$pain, type="ConSal") 201s > round(pperm(sum(css[neuropathy$group=="control"]),css, 201s + m=sum(neuropathy$group=="control")),3) 201s [1] 0.031 201s > 201s > # paired Wilcoxon 201s > 201s > # paired observations 201s > # Data from the StatXact-4 manual, page 167, serum antigen level 201s > 201s > # StatXact 4 for Windows: p.value=0.0021 (page 168) 201s > 201s > data(sal) 201s Warning message: 201s In findfact(scores - min(scores) + 1, m, tol) : 201s cannot hold tol, tolerance: 0.047123 201s > attach(sal) 201s > 201s > we <- wilcox.exact(pre, post, paired=TRUE, conf.int=TRUE) 201s > we 201s 201s Exact Wilcoxon signed rank test 201s 201s data: pre and post 201s V = 124, p-value = 0.002136 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s 54 292 201s sample estimates: 201s (pseudo)median 201s 137.75 201s 201s > stopifnot(round(we$p.value,4) == 0.0021) 201s > 201s > we <- wilcox.exact(post, pre, paired=TRUE, conf.int=TRUE) 201s > stopifnot(we$estimate > we$conf.int[1] & we$estimate < we$conf.int[2]) 201s > stopifnot(we$conf.int[1] == -292) 201s > stopifnot(we$conf.int[2] == -54) 201s > stopifnot(round(we$estimate,1) == -137.8) 201s > 201s > we <- wilcox.exact(pre,post, paired=TRUE, conf.int=TRUE, exact=FALSE) 201s > we 201s 201s Asymptotic Wilcoxon signed rank test 201s 201s data: pre and post 201s V = 124, p-value = 0.003783 201s alternative hypothesis: true mu is not equal to 0 201s 95 percent confidence interval: 201s 54.49998 281.50005 201s sample estimates: 201s (pseudo)median 201s 137.2646 201s 201s > stopifnot(round(we$p.value,4) == 0.0038) 201s > 201s > # irank 201s > x <- rnorm(100) 201s > stopifnot(all(rank(x) == irank(x))) 201s > 201s BEGIN TEST stest.R 201s 201s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 201s Copyright (C) 2024 The R Foundation for Statistical Computing 201s Platform: aarch64-unknown-linux-gnu (64-bit) 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 202s > 202s > library("exactRankTests") 202s Package ‘exactRankTests’ is no longer under development. 202s Please consider using package ‘coin’ instead. 202s 202s > suppressWarnings(RNGversion("3.5.3")) 202s > set.seed(29081975) 202s > 202s > # test the distribution functions 202s > 202s > # paired observations 202s > 202s > hansi <- c() 202s > seppl <- c() 202s > for (i in 1:10) 202s + { 202s + m <- sample(10:50, 1) 202s + score <- sample(m) 202s + val <- sample(0:m, 1) 202s + # cat("m: ", m, "n: ", n, " val: ", val, "\n") 202s + hansi <- c(hansi, psignrank(val, m)) 202s + cat("psignrank: ", hansi[length(hansi)]) 202s + seppl <- c(seppl, pperm(val, score, m, alternative="less", 202s + simulate=TRUE, B=20000)) 202s + cat(" pperm: ", seppl[length(seppl)], "\n") 202s + } 202s psignrank: 0.001220703 pperm: 0.0011 202s psignrank: 1.591616e-12 pperm: 0 202s psignrank: 2.707168e-12 pperm: 0 202s psignrank: 6.556511e-07 pperm: 0 202s psignrank: 1.907349e-05 pperm: 5e-05 202s psignrank: 5.293543e-11 pperm: 0 202s psignrank: 5.783818e-11 pperm: 0 202s psignrank: 1.218723e-10 pperm: 0 202s psignrank: 7.958079e-13 pperm: 0 202s psignrank: 5.261214e-11 pperm: 0 202s > 202s > cat("Max difference: ", max(abs(hansi - seppl)), "\n") 202s Max difference: 0.0001207031 202s > 202s > # stopifnot(max(abs(hansi - seppl)) <= 1e-10) 202s > 202s > hansi <- c() 202s > seppl <- c() 202s > for (i in 1:10) 202s + { 202s + m <- sample(10:50, 1) 202s + score <- sample(m) 202s + prob <- runif(1) 202s + # cat("m: ", m, "n: ", n, " prob: ", prob, "\n") 202s + hansi <- c(hansi, qsignrank(prob, m)) 202s + cat("qwilcox: ", hansi[length(hansi)]) 202s + seppl <- c(seppl, qperm(prob, score, m, 202s + simulate=TRUE, B=20000)) 202s + cat(" qperm: ", seppl[length(seppl)], "\n") 202s + } 202s qwilcox: 77 qperm: 77 202s qwilcox: 57 qperm: 57 202s qwilcox: 362 qperm: 361 202s qwilcox: 18 qperm: 18 202s qwilcox: 61 qperm: 61 202s qwilcox: 801 qperm: 800 202s qwilcox: 78 qperm: 78 202s qwilcox: 137 qperm: 136 202s qwilcox: 242 qperm: 242 202s qwilcox: 362 qperm: 361 202s > 202s > cat("Max difference: ", max(abs(hansi - seppl)), "\n") 202s Max difference: 1 202s > 202s > # stopifnot(max(abs(hansi - seppl)) <= 1e-10) 202s > 202s > # independent observations 202s > 202s > hansi <- c() 202s > seppl <- c() 202s > for (i in 1:10) 202s + { 202s + m <- sample(10:50, 1) 202s + if (runif(1) < 0.5) 202s + n <- sample(10:50, 1) 202s + else 202s + n <- m 202s + score <- sample(n+m) 202s + val <- sample(0:(m*n), 1) 202s + # cat("m: ", m, "n: ", n, " val: ", val, "\n") 202s + hansi <- c(hansi, pwilcox(val, m, n)) 202s + cat("pwilcox: ", hansi[length(hansi)]) 202s + seppl <- c(seppl, pperm(val + m*(m+1)/2, score, m, 202s + alternative="less", 202s + simulate=TRUE, B=20000)) 202s + cat(" pperm: ", seppl[length(seppl)], "\n") 202s + } 202s pwilcox: 0.001780223 pperm: 0.0014 202s pwilcox: 0.2239793 pperm: 0.2248 202s pwilcox: 0.9752875 pperm: 0.977 202s pwilcox: 0.05855181 pperm: 0.06065 202s pwilcox: 4.876652e-14 pperm: 0 202s pwilcox: 0.9999998 pperm: 1 202s pwilcox: 0.00275155 pperm: 0.00255 202s pwilcox: 0.02748546 pperm: 0.02835 202s pwilcox: 0.9990436 pperm: 0.99895 202s pwilcox: 0.999487 pperm: 0.99955 202s > 202s > cat("Max difference: ", max(abs(hansi - seppl)), "\n") 202s Max difference: 0.002098186 202s > 202s > # stopifnot(max(abs(hansi - seppl)) <= 1e-10) 202s > 202s > hansi <- c() 202s > seppl <- c() 202s > for (i in 1:10) 202s + { 202s + m <- sample(10:50, 1) 202s + if (runif(1) < 0.5) 202s + n <- sample(10:50, 1) 202s + else 202s + n <- m 202s + score <- sample(n+m) 202s + prob <- runif(1) 202s + # cat("m: ", m, "n: ", n, " prob: ", prob, "\n") 202s + hansi <- c(hansi, qwilcox(prob, m, n)) 202s + cat("qwilcox: ", hansi[length(hansi)]) 202s + seppl <- c(seppl, qperm(prob, score, m, simulate=TRUE, B=20000) 202s + - m*(m+1)/2) 202s + cat(" qperm: ", seppl[length(seppl)], "\n") 202s + } 202s qwilcox: 723 qperm: 722 203s qwilcox: 450 qperm: 450 203s qwilcox: 323 qperm: 323 203s qwilcox: 433 qperm: 433 203s qwilcox: 258 qperm: 258 203s qwilcox: 906 qperm: 906 203s qwilcox: 1150 qperm: 1150 203s qwilcox: 664 qperm: 665 203s qwilcox: 179 qperm: 181 203s qwilcox: 724 qperm: 724 203s > 203s > cat("Max difference: ", max(abs(hansi - seppl)), "\n") 203s Max difference: 2 203s > 203s > # stopifnot(max(abs(hansi - seppl)) <= 1e-10) 203s > 203s > 203s autopkgtest [18:30:49]: test run-unit-test: -----------------------] 204s autopkgtest [18:30:50]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 204s run-unit-test PASS 205s autopkgtest [18:30:51]: test pkg-r-autopkgtest: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 208s The following additional packages will be installed: 208s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 208s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 208s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 208s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 208s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 208s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 208s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 208s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 208s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 208s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 208s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-lattice 208s r-cran-matrix r-cran-survival rpcsvc-proto zlib1g-dev 208s Suggested packages: 208s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 208s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 208s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 208s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 208s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 208s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 208s texlive-latex-recommended texlive-latex-extra texinfo 208s Recommended packages: 208s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 208s The following NEW packages will be installed: 208s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 208s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 208s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 208s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 208s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 208s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 208s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 208s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 208s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 208s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 208s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 208s pkgconf pkgconf-bin r-base-dev r-cran-lattice r-cran-matrix r-cran-survival 208s rpcsvc-proto zlib1g-dev 208s 0 upgraded, 65 newly installed, 0 to remove and 0 not upgraded. 208s Need to get 104 MB/104 MB of archives. 208s After this operation, 359 MB of additional disk space will be used. 208s Get:1 /tmp/autopkgtest.OnmSxC/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 208s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 208s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 208s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 208s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 208s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 208s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 208s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 208s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 209s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 209s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 209s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 209s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 209s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 209s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 209s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 209s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 209s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 209s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 209s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 209s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 209s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 209s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 209s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 210s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 210s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 210s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 210s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 210s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 210s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 210s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 210s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 210s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 210s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 210s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 210s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 210s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 210s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 210s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 210s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 210s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 210s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 210s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 210s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 210s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 210s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 210s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 211s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 211s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 211s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 211s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 211s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 211s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 211s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 211s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 211s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 211s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 211s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 211s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 211s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 211s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 211s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 211s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 211s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 211s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 212s Fetched 104 MB in 3s (31.6 MB/s) 212s Selecting previously unselected package libc-dev-bin. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76834 files and directories currently installed.) 212s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 212s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 212s Selecting previously unselected package linux-libc-dev:arm64. 213s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 213s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 213s Selecting previously unselected package libcrypt-dev:arm64. 213s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 213s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 213s Selecting previously unselected package libtirpc-dev:arm64. 213s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 213s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 213s Selecting previously unselected package libnsl-dev:arm64. 213s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ... 213s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 213s Selecting previously unselected package rpcsvc-proto. 213s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 213s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 213s Selecting previously unselected package libc6-dev:arm64. 213s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ... 213s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 213s Selecting previously unselected package libisl23:arm64. 213s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ... 213s Unpacking libisl23:arm64 (0.26-3) ... 213s Selecting previously unselected package libmpc3:arm64. 213s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 213s Unpacking libmpc3:arm64 (1.3.1-1) ... 213s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 213s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 213s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 213s Selecting previously unselected package cpp-13. 213s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 213s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 213s Selecting previously unselected package cpp-aarch64-linux-gnu. 213s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 213s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 214s Selecting previously unselected package cpp. 214s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 214s Unpacking cpp (4:13.2.0-7ubuntu1) ... 214s Selecting previously unselected package libcc1-0:arm64. 214s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libitm1:arm64. 214s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libatomic1:arm64. 214s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libasan8:arm64. 214s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package liblsan0:arm64. 214s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libtsan2:arm64. 214s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libubsan1:arm64. 215s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libhwasan0:arm64. 215s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libgcc-13-dev:arm64. 215s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 215s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 215s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 215s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 215s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package gcc-13. 216s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package gcc-aarch64-linux-gnu. 216s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 216s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 216s Selecting previously unselected package gcc. 216s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 216s Unpacking gcc (4:13.2.0-7ubuntu1) ... 216s Selecting previously unselected package libstdc++-13-dev:arm64. 216s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package g++-13-aarch64-linux-gnu. 216s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-13. 217s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 217s Unpacking g++-13 (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-aarch64-linux-gnu. 217s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 217s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package g++. 217s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 217s Unpacking g++ (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package build-essential. 217s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 217s Unpacking build-essential (12.10ubuntu1) ... 217s Selecting previously unselected package dctrl-tools. 217s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 217s Unpacking dctrl-tools (2.24-3build2) ... 217s Selecting previously unselected package libgfortran-13-dev:arm64. 217s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 217s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 217s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 217s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package gfortran-13. 217s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 217s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package gfortran-aarch64-linux-gnu. 217s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 217s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package gfortran. 217s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 217s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package icu-devtools. 217s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 217s Unpacking icu-devtools (74.2-1ubuntu1) ... 217s Selecting previously unselected package libblas-dev:arm64. 217s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 217s Unpacking libblas-dev:arm64 (3.12.0-3) ... 217s Selecting previously unselected package libbz2-dev:arm64. 217s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 217s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 217s Selecting previously unselected package libicu-dev:arm64. 217s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 217s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 218s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 218s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 218s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 218s Selecting previously unselected package libjpeg8-dev:arm64. 218s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 218s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 218s Selecting previously unselected package libjpeg-dev:arm64. 218s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 218s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 218s Selecting previously unselected package liblapack-dev:arm64. 218s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 218s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 218s Selecting previously unselected package libncurses-dev:arm64. 218s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 218s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 218s Selecting previously unselected package libpcre2-16-0:arm64. 218s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 218s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 218s Selecting previously unselected package libpcre2-32-0:arm64. 218s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 218s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 218s Selecting previously unselected package libpcre2-posix3:arm64. 218s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 218s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 218s Selecting previously unselected package libpcre2-dev:arm64. 218s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 218s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 218s Selecting previously unselected package libpkgconf3:arm64. 219s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ... 219s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 219s Selecting previously unselected package zlib1g-dev:arm64. 219s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 219s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 219s Selecting previously unselected package libpng-dev:arm64. 219s Preparing to unpack .../53-libpng-dev_1.6.43-3_arm64.deb ... 219s Unpacking libpng-dev:arm64 (1.6.43-3) ... 219s Selecting previously unselected package libreadline-dev:arm64. 219s Preparing to unpack .../54-libreadline-dev_8.2-3.1_arm64.deb ... 219s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 219s Selecting previously unselected package pkgconf-bin. 219s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ... 219s Unpacking pkgconf-bin (1.8.1-2) ... 219s Selecting previously unselected package pkgconf:arm64. 219s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ... 219s Unpacking pkgconf:arm64 (1.8.1-2) ... 219s Selecting previously unselected package pkg-config:arm64. 219s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ... 219s Unpacking pkg-config:arm64 (1.8.1-2) ... 219s Selecting previously unselected package liblzma-dev:arm64. 219s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ... 219s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 219s Selecting previously unselected package r-base-dev. 219s Preparing to unpack .../59-r-base-dev_4.3.3-2build1_all.deb ... 219s Unpacking r-base-dev (4.3.3-2build1) ... 219s Selecting previously unselected package pkg-r-autopkgtest. 219s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 219s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 219s Selecting previously unselected package r-cran-lattice. 219s Preparing to unpack .../61-r-cran-lattice_0.22-5-1_arm64.deb ... 219s Unpacking r-cran-lattice (0.22-5-1) ... 219s Selecting previously unselected package r-cran-matrix. 219s Preparing to unpack .../62-r-cran-matrix_1.6-5-1_arm64.deb ... 219s Unpacking r-cran-matrix (1.6-5-1) ... 219s Selecting previously unselected package r-cran-survival. 219s Preparing to unpack .../63-r-cran-survival_3.5-8-1_arm64.deb ... 219s Unpacking r-cran-survival (3.5-8-1) ... 220s Selecting previously unselected package autopkgtest-satdep. 220s Preparing to unpack .../64-2-autopkgtest-satdep.deb ... 220s Unpacking autopkgtest-satdep (0) ... 220s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 220s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 220s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 220s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 220s Setting up libpkgconf3:arm64 (1.8.1-2) ... 220s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 220s Setting up libmpc3:arm64 (1.3.1-1) ... 220s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 220s Setting up icu-devtools (74.2-1ubuntu1) ... 220s Setting up pkgconf-bin (1.8.1-2) ... 220s Setting up r-cran-lattice (0.22-5-1) ... 220s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 220s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 220s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 220s Setting up libnsl-dev:arm64 (1.3.0-3) ... 220s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 220s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 220s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 220s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 220s Setting up libisl23:arm64 (0.26-3) ... 220s Setting up 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/usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 220s Setting up g++ (4:13.2.0-7ubuntu1) ... 220s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 220s Setting up build-essential (12.10ubuntu1) ... 220s Setting up r-base-dev (4.3.3-2build1) ... 220s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 220s Setting up autopkgtest-satdep (0) ... 220s Processing triggers for man-db (2.12.0-3) ... 221s Processing triggers for install-info (7.1-3) ... 221s Processing triggers for libc-bin (2.39-0ubuntu2) ... 226s (Reading database ... 80669 files and directories currently installed.) 226s Removing autopkgtest-satdep (0) ... 227s autopkgtest [18:31:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 227s autopkgtest [18:31:13]: test pkg-r-autopkgtest: [----------------------- 227s Test: Try to load the R library exactRankTests 228s 228s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 228s Copyright (C) 2024 The R Foundation for Statistical Computing 228s Platform: aarch64-unknown-linux-gnu (64-bit) 228s 228s R is free software and comes with ABSOLUTELY NO WARRANTY. 228s You are welcome to redistribute it under certain conditions. 228s Type 'license()' or 'licence()' for distribution details. 228s 228s R is a collaborative project with many contributors. 228s Type 'contributors()' for more information and 228s 'citation()' on how to cite R or R packages in publications. 228s 228s Type 'demo()' for some demos, 'help()' for on-line help, or 228s 'help.start()' for an HTML browser interface to help. 228s Type 'q()' to quit R. 228s 228s > library('exactRankTests') 228s Package ‘exactRankTests’ is no longer under development. 228s Please consider using package ‘coin’ instead. 228s 228s > 228s > 228s Other tests are currently unsupported! 228s They will be progressively added. 229s autopkgtest [18:31:15]: test pkg-r-autopkgtest: -----------------------] 229s autopkgtest [18:31:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 229s pkg-r-autopkgtest PASS 229s autopkgtest [18:31:15]: @@@@@@@@@@@@@@@@@@@@ summary 229s run-unit-test PASS 229s pkg-r-autopkgtest PASS 248s Creating nova instance adt-noble-arm64-r-cran-exactranktests-20240316-182726-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...