0s autopkgtest [18:28:51]: starting date and time: 2024-03-16 18:28:51+0000 0s autopkgtest [18:28:51]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:28:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.smp4ecnt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-diptest --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-5.secgroup --name adt-noble-arm64-r-cran-diptest-20240316-181458-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 125s autopkgtest [18:30:56]: testbed dpkg architecture: arm64 125s autopkgtest [18:30:56]: testbed apt version: 2.7.12 125s autopkgtest [18:30:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 126s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 127s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3682 kB] 128s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 128s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 128s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 128s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 128s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 128s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 128s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 128s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 128s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 128s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.5 kB] 128s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 138s Fetched 9084 kB in 5s (1783 kB/s) 139s Reading package lists... 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Calculating upgrade... 148s The following packages will be REMOVED: 148s libglib2.0-0 libssl3 148s The following NEW packages will be installed: 148s libglib2.0-0t64 libssl3t64 xdg-user-dirs 148s The following packages have been kept back: 148s curl 148s The following packages will be upgraded: 148s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 149s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 149s Need to get 4592 kB of archives. 149s After this operation, 211 kB of additional disk space will be used. 149s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 149s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 149s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 149s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 149s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 149s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 149s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 150s Fetched 4592 kB in 1s (5407 kB/s) 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 151s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 151s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 151s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 151s udisks2 depends on libglib2.0-0 (>= 2.77.0). 151s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 151s python3-gi depends on libglib2.0-0 (>= 2.77.0). 151s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 151s netplan.io depends on libglib2.0-0 (>= 2.70.0). 151s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 151s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 151s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 151s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 151s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 151s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 151s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 151s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 151s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 151s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 151s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 151s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 151s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 151s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 151s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 151s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 151s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 151s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 151s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 151s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 151s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 151s fwupd depends on libglib2.0-0 (>= 2.79.0). 151s bolt depends on libglib2.0-0 (>= 2.56.0). 151s 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 151s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 152s Selecting previously unselected package libglib2.0-0t64:arm64. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 152s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 152s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 152s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 152s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 152s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 152s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 153s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 153s wget depends on libssl3 (>= 3.0.0). 153s u-boot-tools depends on libssl3 (>= 3.0.0). 153s tnftp depends on libssl3 (>= 3.0.0). 153s tcpdump depends on libssl3 (>= 3.0.0). 153s systemd-resolved depends on libssl3 (>= 3.0.0). 153s systemd depends on libssl3 (>= 3.0.0). 153s sudo depends on libssl3 (>= 3.0.0). 153s sbsigntool depends on libssl3 (>= 3.0.0). 153s rsync depends on libssl3 (>= 3.0.0). 153s python3-cryptography depends on libssl3 (>= 3.0.0). 153s openssh-server depends on libssl3 (>= 3.0.10). 153s openssh-client depends on libssl3 (>= 3.0.10). 153s mtd-utils depends on libssl3 (>= 3.0.0). 153s mokutil depends on libssl3 (>= 3.0.0). 153s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 153s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 153s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 153s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 153s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 153s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 153s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 153s libnvme1 depends on libssl3 (>= 3.0.0). 153s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 153s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 153s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 153s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 153s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 153s kmod depends on libssl3 (>= 3.0.0). 153s dhcpcd-base depends on libssl3 (>= 3.0.0). 153s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 153s 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 153s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 153s Selecting previously unselected package libssl3t64:arm64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 153s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 153s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 153s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 153s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 153s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 153s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 153s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 153s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 154s Selecting previously unselected package xdg-user-dirs. 154s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 154s Unpacking xdg-user-dirs (0.18-1) ... 154s Setting up xdg-user-dirs (0.18-1) ... 154s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 154s Setting up libtirpc-common (1.3.4+ds-1.1) ... 154s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 154s No schema files found: doing nothing. 154s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 154s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 154s Setting up openssl (3.0.13-0ubuntu1) ... 154s Setting up readline-common (8.2-3.1) ... 154s Processing triggers for man-db (2.12.0-3) ... 155s Processing triggers for install-info (7.1-3) ... 156s Processing triggers for libc-bin (2.39-0ubuntu2) ... 156s Reading package lists... 157s Building dependency tree... 157s Reading state information... 159s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 160s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 160s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 160s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 160s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 165s Reading package lists... 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 168s Calculating upgrade... 169s The following packages have been kept back: 169s curl 169s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 169s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 175s autopkgtest [18:31:46]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 175s autopkgtest [18:31:46]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-diptest 178s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-diptest 0.77-0-1 (dsc) [2077 B] 178s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-diptest 0.77-0-1 (tar) [158 kB] 178s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-diptest 0.77-0-1 (diff) [2860 B] 179s gpgv: Signature made Wed Dec 20 20:00:08 2023 UTC 179s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 179s gpgv: issuer "tille@debian.org" 179s gpgv: Can't check signature: No public key 179s dpkg-source: warning: cannot verify inline signature for ./r-cran-diptest_0.77-0-1.dsc: no acceptable signature found 179s autopkgtest [18:31:50]: testing package r-cran-diptest version 0.77-0-1 179s autopkgtest [18:31:50]: build not needed 181s autopkgtest [18:31:52]: test run-unit-test: preparing testbed 182s Reading package lists... 183s Building dependency tree... 183s Reading state information... 184s Starting pkgProblemResolver with broken count: 0 185s Starting 2 pkgProblemResolver with broken count: 0 185s Done 186s The following additional packages will be installed: 186s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 186s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 186s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 186s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 186s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 186s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 186s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 186s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-diptest 186s unzip x11-common xdg-utils zip 186s Suggested packages: 186s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 186s Recommended packages: 186s r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl 186s libx11-protocol-perl x11-utils x11-xserver-utils 187s The following packages will be REMOVED: 187s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 187s The following NEW packages will be installed: 187s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 187s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 187s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 187s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 187s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 187s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 187s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 187s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-diptest 187s unzip x11-common xdg-utils zip 187s The following packages will be upgraded: 187s curl 187s 1 upgraded, 51 newly installed, 5 to remove and 0 not upgraded. 187s Need to get 37.8 MB/37.8 MB of archives. 187s After this operation, 75.7 MB of additional disk space will be used. 187s Get:1 /tmp/autopkgtest.pDyQJe/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [708 B] 187s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 187s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 188s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 188s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 188s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 188s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 188s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 188s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 188s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 188s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 188s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 188s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 188s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 188s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 188s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 188s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 188s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 188s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 188s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 188s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 188s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 188s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 188s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 188s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 188s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 188s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 188s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 188s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 188s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 188s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 188s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 188s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 188s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 188s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 188s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 188s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 188s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 188s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 188s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 188s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 188s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 188s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 188s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 188s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 188s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 188s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 188s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 188s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 188s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 188s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 190s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diptest arm64 0.77-0-1 [197 kB] 191s Preconfiguring packages ... 191s Fetched 37.8 MB in 3s (14.4 MB/s) 191s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 191s wget depends on libpsl5 (>= 0.16.0). 191s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 191s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 191s 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 191s Removing libpsl5:arm64 (0.21.2-1build1) ... 192s Selecting previously unselected package libpsl5t64:arm64. 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 192s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 192s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 192s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 192s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 192s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 192s Selecting previously unselected package libcurl4t64:arm64. 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 192s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 192s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 193s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 193s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 193s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 193s 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 193s Removing libpng16-16:arm64 (1.6.43-1) ... 193s Selecting previously unselected package libpng16-16t64:arm64. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 193s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 193s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 193s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 193s parted depends on libreadline8 (>= 6.0). 193s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 193s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 193s gpgsm depends on libreadline8 (>= 6.0). 193s gpgconf depends on libreadline8 (>= 6.0). 193s gpg depends on libreadline8 (>= 6.0). 193s gawk depends on libreadline8 (>= 6.0). 193s fdisk depends on libreadline8 (>= 6.0). 193s 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 193s Removing libreadline8:arm64 (8.2-3) ... 193s Selecting previously unselected package libreadline8t64:arm64. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 193s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 193s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 193s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 193s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 194s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 194s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 194s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 194s lsof depends on libtirpc3 (>= 1.0.2). 194s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 194s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 194s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 194s iproute2 depends on libtirpc3 (>= 1.0.2). 194s 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 194s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 194s Selecting previously unselected package libtirpc3t64:arm64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 194s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 194s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 194s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 194s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 194s Selecting previously unselected package fonts-dejavu-mono. 194s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 194s Unpacking fonts-dejavu-mono (2.37-8) ... 194s Selecting previously unselected package fonts-dejavu-core. 194s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 194s Unpacking fonts-dejavu-core (2.37-8) ... 194s Selecting previously unselected package fontconfig-config. 195s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 195s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 195s Selecting previously unselected package libfontconfig1:arm64. 195s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 195s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 195s Selecting previously unselected package fontconfig. 195s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 195s Unpacking fontconfig (2.15.0-1ubuntu1) ... 195s Selecting previously unselected package libblas3:arm64. 195s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 195s Unpacking libblas3:arm64 (3.12.0-3) ... 196s Selecting previously unselected package libpixman-1-0:arm64. 196s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 196s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 196s Selecting previously unselected package libxcb-render0:arm64. 196s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 196s Unpacking libxcb-render0:arm64 (1.15-1) ... 196s Selecting previously unselected package libxcb-shm0:arm64. 196s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 196s Unpacking libxcb-shm0:arm64 (1.15-1) ... 196s Selecting previously unselected package libxrender1:arm64. 196s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 196s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 196s Selecting previously unselected package libcairo2:arm64. 196s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 196s Unpacking libcairo2:arm64 (1.18.0-1) ... 196s Selecting previously unselected package libdatrie1:arm64. 196s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 196s Unpacking libdatrie1:arm64 (0.2.13-3) ... 196s Selecting previously unselected package libdeflate0:arm64. 196s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 196s Unpacking libdeflate0:arm64 (1.19-1) ... 196s Selecting previously unselected package libgfortran5:arm64. 196s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libgomp1:arm64. 196s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libgraphite2-3:arm64. 197s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 197s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 197s Selecting previously unselected package libharfbuzz0b:arm64. 197s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_arm64.deb ... 197s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 197s Selecting previously unselected package x11-common. 197s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu2_all.deb ... 197s Unpacking x11-common (1:7.7+23ubuntu2) ... 197s Selecting previously unselected package libice6:arm64. 197s Preparing to unpack .../19-libice6_2%3a1.0.10-1build2_arm64.deb ... 197s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 197s Selecting previously unselected package libjpeg-turbo8:arm64. 197s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 197s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 197s Selecting previously unselected package libjpeg8:arm64. 197s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_arm64.deb ... 197s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 197s Selecting previously unselected package liblapack3:arm64. 197s Preparing to unpack .../22-liblapack3_3.12.0-3_arm64.deb ... 197s Unpacking liblapack3:arm64 (3.12.0-3) ... 197s Selecting previously unselected package liblerc4:arm64. 197s Preparing to unpack .../23-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 197s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 197s Selecting previously unselected package libthai-data. 197s Preparing to unpack .../24-libthai-data_0.1.29-2_all.deb ... 197s Unpacking libthai-data (0.1.29-2) ... 198s Selecting previously unselected package libthai0:arm64. 198s Preparing to unpack .../25-libthai0_0.1.29-2_arm64.deb ... 198s Unpacking libthai0:arm64 (0.1.29-2) ... 198s Selecting previously unselected package libpango-1.0-0:arm64. 198s Preparing to unpack .../26-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 198s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 198s Selecting previously unselected package libpangoft2-1.0-0:arm64. 198s Preparing to unpack .../27-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 198s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 198s Selecting previously unselected package libpangocairo-1.0-0:arm64. 198s Preparing to unpack .../28-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 198s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 198s Selecting previously unselected package libpaper1:arm64. 198s Preparing to unpack .../29-libpaper1_1.1.29_arm64.deb ... 198s Unpacking libpaper1:arm64 (1.1.29) ... 198s Selecting previously unselected package libpaper-utils. 198s Preparing to unpack .../30-libpaper-utils_1.1.29_arm64.deb ... 198s Unpacking libpaper-utils (1.1.29) ... 198s Selecting previously unselected package libsharpyuv0:arm64. 198s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_arm64.deb ... 198s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 198s Selecting previously unselected package libsm6:arm64. 198s Preparing to unpack .../32-libsm6_2%3a1.2.3-1build2_arm64.deb ... 198s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 198s Selecting previously unselected package libtcl8.6:arm64. 198s Preparing to unpack .../33-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 198s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 199s Selecting previously unselected package libjbig0:arm64. 199s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 199s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 199s Selecting previously unselected package libwebp7:arm64. 199s Preparing to unpack .../35-libwebp7_1.3.2-0.4_arm64.deb ... 199s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 199s Selecting previously unselected package libtiff6:arm64. 199s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 199s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 199s Selecting previously unselected package libxft2:arm64. 199s Preparing to unpack .../37-libxft2_2.3.6-1_arm64.deb ... 199s Unpacking libxft2:arm64 (2.3.6-1) ... 199s Selecting previously unselected package libxss1:arm64. 199s Preparing to unpack .../38-libxss1_1%3a1.2.3-1build2_arm64.deb ... 199s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 199s Selecting previously unselected package libtk8.6:arm64. 199s Preparing to unpack .../39-libtk8.6_8.6.13-2_arm64.deb ... 199s Unpacking libtk8.6:arm64 (8.6.13-2) ... 199s Selecting previously unselected package libxt6t64:arm64. 199s Preparing to unpack .../40-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 199s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 199s Selecting previously unselected package zip. 199s Preparing to unpack .../41-zip_3.0-13_arm64.deb ... 199s Unpacking zip (3.0-13) ... 200s Selecting previously unselected package unzip. 200s Preparing to unpack .../42-unzip_6.0-28ubuntu3_arm64.deb ... 200s Unpacking unzip (6.0-28ubuntu3) ... 200s Selecting previously unselected package xdg-utils. 200s Preparing to unpack .../43-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 200s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 200s Selecting previously unselected package r-base-core. 200s Preparing to unpack .../44-r-base-core_4.3.3-2build1_arm64.deb ... 200s Unpacking r-base-core (4.3.3-2build1) ... 201s Selecting previously unselected package r-cran-diptest. 201s Preparing to unpack .../45-r-cran-diptest_0.77-0-1_arm64.deb ... 201s Unpacking r-cran-diptest (0.77-0-1) ... 202s Selecting previously unselected package autopkgtest-satdep. 202s Preparing to unpack .../46-1-autopkgtest-satdep.deb ... 202s Unpacking autopkgtest-satdep (0) ... 202s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 202s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 202s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 202s Setting up libpaper1:arm64 (1.1.29) ... 202s 202s Creating config file /etc/papersize with new version 202s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 202s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 202s Setting up libdatrie1:arm64 (0.2.13-3) ... 202s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 202s Setting up libxcb-render0:arm64 (1.15-1) ... 202s Setting up unzip (6.0-28ubuntu3) ... 202s Setting up x11-common (1:7.7+23ubuntu2) ... 204s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 204s Setting up libdeflate0:arm64 (1.19-1) ... 204s Setting up libxcb-shm0:arm64 (1.15-1) ... 204s Setting up libpaper-utils (1.1.29) ... 204s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 204s Setting up zip (3.0-13) ... 204s Setting up libblas3:arm64 (3.12.0-3) ... 204s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 204s Setting up fonts-dejavu-mono (2.37-8) ... 204s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 204s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 204s Setting up fonts-dejavu-core (2.37-8) ... 204s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 204s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 204s Setting up libwebp7:arm64 (1.3.2-0.4) ... 204s Setting up libreadline8t64:arm64 (8.2-3.1) ... 204s Setting up libharfbuzz0b:arm64 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222s 222s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 222s Copyright (C) 2024 The R Foundation for Statistical Computing 222s Platform: aarch64-unknown-linux-gnu (64-bit) 222s 222s R is free software and comes with ABSOLUTELY NO WARRANTY. 222s You are welcome to redistribute it under certain conditions. 222s Type 'license()' or 'licence()' for distribution details. 222s 222s R is a collaborative project with many contributors. 222s Type 'contributors()' for more information and 222s 'citation()' on how to cite R or R packages in publications. 222s 222s Type 'demo()' for some demos, 'help()' for on-line help, or 222s 'help.start()' for an HTML browser interface to help. 222s Type 'q()' to quit R. 222s 223s > library(diptest) 223s > 223s > stopifnot(dip(c(1,1,2,2)) == 1/4)# the maximal value possible: two point dist 223s > 223s > ## very first small "unimodal" example --- the 1/(2*n) result: 223s > n <- length(u <- cumsum(0:3)) 223s > d <- dip(u, debug=TRUE)# shows the final if() {added by MM} is really needed 223s dip() in C: n = 4; starting with 2N*dip = 1. 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 4]; l_lcm/gcm = ( 4, 2) 223s while(gcm[ix] != lcm[iv]) : .. 223s calculating dip .. (dip_l, dip_u) = (0, 1) 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 3]; l_lcm/gcm = ( 3, 2) 223s while(gcm[ix] != lcm[iv]) : . 223s calculating dip .. (dip_l, dip_u) = (0, 1) 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 2]; l_lcm/gcm = ( 2, 2) 223s ** (l_lcm,l_gcm) = (2,2) ==> d := 1 223s calculating dip .. (dip_l, dip_u) = (0, 0) 223s No improvement in low = 1 nor high = 2 --> END 223s > stopifnot(d == dip(-u), d == 1/(2*n))# exact "=" for n = 4 ! 223s > ## Note that I believe this should *not* give 0 (as fmechler@.. did), 223s > ## but rather 1/(2n) because that's (1/n) / 2 and 223s > ## (1/n) is the correct distance between LCM and GCM 223s > 223s > ## Small example -- but MM sees difference (32-bit / 64-bit): 223s > x <- c(0,2:3,5:6) 223s > d1 <- dip(x, full=TRUE, debug=2) 223s dip() in C: n = 5; starting with 2N*dip = 1. 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 5]; l_lcm/gcm = ( 2, 4) 223s while(gcm[ix] != lcm[iv]) : 223s G(3,2) --> ix = 2, iv = 2 223s G(2,2) --> ix = 1, iv = 2 223s calculating dip .. (dip_l, dip_u) = (1.33333, 0) -> new larger dip 1.33333 (j_best = 3) 223s 'dip': LOOP-BEGIN: 2n*D= 1.3333 [low,high] = [ 4, 5]; l_lcm/gcm = ( 2, 2) 223s ** (l_lcm,l_gcm) = (2,2) ==> d := 1 223s > d2 <- dip(6-x, full=TRUE, debug=2) 223s dip() in C: n = 5; starting with 2N*dip = 1. 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 5]; l_lcm/gcm = ( 4, 2) 223s while(gcm[ix] != lcm[iv]) : 223s L(2,2) --> ix = 1, iv = 3 223s L(2,3) --> ix = 1, iv = 4 223s calculating dip .. (dip_l, dip_u) = (0, 1) 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 4]; l_lcm/gcm = ( 3, 3) 223s while(gcm[ix] != lcm[iv]) : 223s L(3,2) --> ix = 2, iv = 3 223s --> ix = 1, iv = 3 223s calculating dip .. (dip_l, dip_u) = (0, 1.33333) -> new larger dip 1.33333 (j_best = 3) 223s 'dip': LOOP-BEGIN: 2n*D= 1.3333 [low,high] = [ 1, 2]; l_lcm/gcm = ( 2, 2) 223s ** (l_lcm,l_gcm) = (2,2) ==> d := 1 223s > str(d1) 223s List of 15 223s $ call : language dip(x = x, full.result = TRUE, debug = 2) 223s $ x : num [1:5] 0 2 3 5 6 223s $ n : int 5 223s $ dip : num 0.133 223s $ lo.hi : int [1:2] 4 5 223s $ ifault : int 0 223s $ gcm : int [1:2] 5 4 223s $ lcm : int [1:2] 4 5 223s $ mn : int [1:5] 1 1 2 2 4 223s $ mj : int [1:5] 5 3 5 5 5 223s $ min.is.0 : logi FALSE 223s $ debug : int 2 223s $ xl : num 5 223s $ xu : num 6 223s $ full.result: logi TRUE 223s - attr(*, "class")= chr "dip" 223s > str(d2) 223s List of 15 223s $ call : language dip(x = 6 - x, full.result = TRUE, debug = 2) 223s $ x : num [1:5] 0 1 3 4 6 223s $ n : int 5 223s $ dip : num 0.133 223s $ lo.hi : int [1:2] 1 2 223s $ ifault : int 0 223s $ gcm : int [1:2] 2 1 223s $ lcm : int [1:2] 1 2 223s $ mn : int [1:5] 1 1 1 3 1 223s $ mj : int [1:5] 2 4 4 5 5 223s $ min.is.0 : logi FALSE 223s $ debug : int 2 223s $ xl : num 0 223s $ xu : num 1 223s $ full.result: logi TRUE 223s - attr(*, "class")= chr "dip" 223s > 223s > if(!dev.interactive(orNone=TRUE)) pdf("ex1.pdf") 223s > par(mfrow = 2:1, mar = .1+c(3,4,2,1), mgp=c(1.5,.6,0), oma = c(0,0,2.1,0)) 223s > # 223s > plot(d1) 223s > abline(v=-1:7, h = seq(0,1,by=0.2), lty="83", col = "gray") 223s > # 223s > plot(d2) 223s > abline(v=-1:7, h = seq(0,1,by=0.2), lty="83", col = "gray") 223s > # 223s > ## "title" only now 223s > mtext("dip() problem with 'mirror x'", side=3, line = 0.8, 223s + outer=TRUE, cex = 1.5, font = 2) 223s > 223s > 223s > ## Yong Lu example -- a bit smaller 223s > x2 <- c(1, rep(2, 9)) 223s > stopifnot(dip(x2) == dip(3 - x2)) 223s > str(dip(x2, full=TRUE)) 223s List of 15 223s $ call : language dip(x = x2, full.result = TRUE) 223s $ x : num [1:10] 1 2 2 2 2 2 2 2 2 2 223s $ n : int 10 223s $ dip : num 0.05 223s $ lo.hi : int [1:2] 2 10 223s $ ifault : int 0 223s $ gcm : int [1:2] 10 2 223s $ lcm : int [1:2] 2 10 223s $ mn : int [1:10] 1 1 2 2 2 2 2 2 2 2 223s $ mj : int [1:10] 10 10 10 10 10 10 10 10 10 10 223s $ min.is.0 : logi FALSE 223s $ debug : int 0 223s $ xl : num 2 223s $ xu : num 2 223s $ full.result: logi TRUE 223s - attr(*, "class")= chr "dip" 223s > cat('Time elapsed: ', (.pt <- proc.time()),'\n') # "stats" 223s Time elapsed: 0.889 0.207 1.15 0.003 0.011 223s > 223s > ## Real data examples : 223s > 223s > data(statfaculty) 223s > 223s > str(dip(statfaculty, full = "all", debug = 3), vec.len = 8) 223s dip() in C: n = 63; starting with 2N*dip = 1. 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 63] : 223s gcm[1:6] = 63, 62, 7, 3, 2, 1 223s lcm[1:5] = 1, 44, 58, 59, 63 223s while(gcm[ix] != lcm[iv]) : 223s G(5,2) --> ix = 4, iv = 2 223s G(4,2) --> ix = 3, iv = 2 223s G(3,2) --> ix = 2, iv = 2 223s L(3,2) --> ix = 2, iv = 3 223s L(3,3) --> ix = 2, iv = 4 223s --> ix = 2, iv = 5 223s --> ix = 1, iv = 5 223s calculating dip .. (dip_l, dip_u) = (2, 2.11111) -> new larger dip 2.11111 (j_best = 61) 223s 'dip': LOOP-BEGIN: 2n*D= 2.1111 [low,high] = [ 7, 58] : 223s gcm[1:5] = 58, 55, 51, 48, 7 223s lcm[1:6] = 7, 11, 15, 42, 44, 58 223s while(gcm[ix] != lcm[iv]) : 223s L(5,2) --> ix = 4, iv = 3 223s L(5,3) --> ix = 4, iv = 4 223s L(5,4) --> ix = 4, iv = 5 223s L(5,5) --> ix = 4, iv = 6 223s --> ix = 3, iv = 6 223s --> ix = 2, iv = 6 223s --> ix = 1, iv = 6 223s calculating dip .. (dip_l, dip_u) = (0, 7.5) -> new larger dip 7.5 (j_best = 48) 223s 'dip': LOOP-BEGIN: 2n*D= 7.5 [low,high] = [ 7, 44] : 223s gcm[1:4] = 44, 43, 38, 7 223s lcm[1:5] = 7, 11, 15, 42, 44 223s while(gcm[ix] != lcm[iv]) : 223s L(4,2) --> ix = 3, iv = 3 223s L(4,3) --> ix = 3, iv = 4 223s --> ix = 2, iv = 4 223s --> ix = 2, iv = 5 223s --> ix = 1, iv = 5 223s List of 17 223s $ call : language dip(x = statfaculty, full.result = "all", debug = 3) 223s $ x : num [1:63] 30 33 35 36 37 37 39 39 39 39 39 40 40 40 40 41 42 43 43 43 ... 223s $ n : int 63 223s $ dip : num 0.0595 223s $ lo.hi : int [1:2] 7 44 223s $ ifault : int 0 223s $ gcm : int [1:4] 44 43 38 7 223s $ lcm : int [1:5] 7 11 15 42 44 223s $ mn : int [1:63] 1 1 2 3 3 5 3 7 7 7 7 7 12 12 12 7 7 7 18 18 ... 223s $ mj : int [1:63] 44 44 15 15 6 15 11 11 11 11 15 15 15 15 42 42 20 20 20 42 ... 223s $ min.is.0 : logi FALSE 223s $ debug : int 3 223s $ xl : num 39 223s $ xu : num 54 223s $ full.result: chr "all" 223s $ GCM : int [1:6] 63 62 7 3 2 1 223s $ LCM : int [1:5] 1 44 58 59 63 223s - attr(*, "class")= chr "dip" 223s > 223s > data(faithful) 223s > fE <- faithful$eruptions 223s > str(dip(fE, full = "all", debug = 3), 223s + vec.len= 8) 223s dip() in C: n = 272; starting with 2N*dip = 1. 223s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1,272] : 223s gcm[1:7] = 272, 135, 120, 119, 4, 2, 1 223s lcm[1:10] = 1, 40, 58, 60, 66, 79, 91, 261, 268, 272 223s while(gcm[ix] != lcm[iv]) : 223s G(6,2) --> ix = 5, iv = 2 223s G(5,2) --> ix = 4, iv = 2 223s L(5,2) --> ix = 4, iv = 3 223s L(5,3) --> ix = 4, iv = 4 223s L(5,4) --> ix = 4, iv = 5 223s L(5,5) --> ix = 4, iv = 6 223s L(5,6) --> ix = 4, iv = 7 223s L(5,7) --> ix = 4, iv = 8 223s G(4,8) --> ix = 3, iv = 8 223s G(3,8) --> ix = 2, iv = 8 223s --> ix = 1, iv = 8 223s --> ix = 1, iv = 9 223s --> ix = 1, iv = 10 223s calculating dip .. (dip_l, dip_u) = (50.2553, 3) -> new larger dip 50.2553 (j_best = 91) 223s 'dip': LOOP-BEGIN: 2n*D= 50.255 [low,high] = [120,261] : 223s gcm[1:7] = 261, 260, 252, 181, 146, 135, 120 223s lcm[1:5] = 120, 124, 233, 246, 261 223s while(gcm[ix] != lcm[iv]) : 223s L(7,2) --> ix = 6, iv = 3 223s G(6,3) --> ix = 5, iv = 3 223s G(5,3) --> ix = 4, iv = 3 223s G(4,3) --> ix = 3, iv = 3 223s --> ix = 3, iv = 4 223s --> ix = 3, iv = 5 223s --> ix = 2, iv = 5 223s --> ix = 1, iv = 5 223s List of 17 223s $ call : language dip(x = fE, full.result = "all", debug = 3) 223s $ x : num [1:272] 1.6 1.67 1.7 1.73 1.75 1.75 1.75 1.75 1.75 1.75 ... 223s $ n : int 272 223s $ dip : num 0.0924 223s $ lo.hi : int [1:2] 120 261 223s $ ifault : int 0 223s $ gcm : int [1:7] 261 260 252 181 146 135 120 223s $ lcm : int [1:5] 120 124 233 246 261 223s $ mn : int [1:272] 1 1 2 2 4 5 5 5 5 5 5 11 5 13 13 13 13 17 17 13 ... 224s $ mj : int [1:272] 40 40 40 10 10 10 10 10 10 40 12 36 16 16 16 26 19 19 26 26 ... 224s $ min.is.0 : logi FALSE 224s $ debug : int 3 224s $ xl : num 3.83 224s $ xu : num 4.83 224s $ full.result: chr "all" 224s $ GCM : int [1:7] 272 135 120 119 4 2 1 224s $ LCM : int [1:10] 1 40 58 60 66 79 91 261 268 272 224s - attr(*, "class")= chr "dip" 224s > 224s > data(precip) 224s > str(dip(precip, full = TRUE, debug = TRUE)) 224s dip() in C: n = 70; starting with 2N*dip = 1. 224s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 70]; l_lcm/gcm = ( 6, 4) 224s while(gcm[ix] != lcm[iv]) : ...... 224s calculating dip .. (dip_l, dip_u) = (5, 2.5) -> new larger dip 5 (j_best = 13) 224s 'dip': LOOP-BEGIN: 2n*D= 5 [low,high] = [ 19, 64]; l_lcm/gcm = ( 6, 6) 224s while(gcm[ix] != lcm[iv]) : ........ 224s calculating dip .. (dip_l, dip_u) = (3.875, 3.44828) 224s 'dip': LOOP-BEGIN: 2n*D= 5 [low,high] = [ 31, 55]; l_lcm/gcm = ( 4, 3) 224s while(gcm[ix] != lcm[iv]) : ... 224s List of 15 224s $ call : language dip(x = precip, full.result = TRUE, debug = TRUE) 224s $ x : num [1:70] 7 7.2 7.8 7.8 11.5 13 14 14.6 15 15.2 ... 224s $ n : int 70 224s $ dip : num 0.0357 224s $ lo.hi : int [1:2] 31 55 224s $ ifault : int 0 224s $ gcm : int [1:3] 55 49 31 224s $ lcm : int [1:4] 31 32 35 55 224s $ mn : int [1:70] 1 1 1 3 1 1 6 7 8 9 ... 224s $ mj : int [1:70] 2 4 4 64 55 10 10 10 10 55 ... 224s $ min.is.0 : logi FALSE 224s $ debug : int 1 224s $ xl : Named num 35.9 224s ..- attr(*, "names")= chr "Dallas" 224s $ xu : Named num 43.4 224s ..- attr(*, "names")= chr "Hartford" 224s $ full.result: logi TRUE 224s - attr(*, "class")= chr "dip" 224s > 224s > cat('Time elapsed: ', proc.time() - .pt,'\n') # "stats" 224s Time elapsed: 0.21 0.02 0.31 0 0 224s > 224s > if(!interactive()) warnings() 224s > 224s BEGIN TEST mechler-ex.R 224s 224s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 224s Copyright (C) 2024 The R Foundation for Statistical Computing 224s Platform: aarch64-unknown-linux-gnu (64-bit) 224s 224s R is free software and comes with ABSOLUTELY NO WARRANTY. 224s You are welcome to redistribute it under certain conditions. 224s Type 'license()' or 'licence()' for distribution details. 224s 224s R is a collaborative project with many contributors. 224s Type 'contributors()' for more information and 224s 'citation()' on how to cite R or R packages in publications. 224s 224s Type 'demo()' for some demos, 'help()' for on-line help, or 224s 'help.start()' for an HTML browser interface to help. 224s Type 'q()' to quit R. 224s 225s > library(diptest) 225s > ## These are from 225s > ## the 217-readme.doc file that explains the bug fixed by 225s > ## Ferenc Mechler (fmechler@med.cornell.edu). [5/Sep/2002] 225s > ## 225s > ex1 <- c(0.0198, 0.0198, 0.1961, 0.2898, 0.3184, 0.3687, 225s + 0.4336, 0.4987, 0.5661, 0.6530, 0.7476, 0.8555) 225s > 225s > ex2 <- c(0.0198, 0.1961, 0.2898, 0.3184, 0.3687, 0.4336, 225s + 0.4987, 0.5661, 0.6530, 0.7476, 0.8555, 0.9912) 225s > 225s > ## Multiply them by 10000 here: 225s > 225s > (D1 <- dip(10000*ex1, full=TRUE, debug=2)) 225s dip() in C: n = 12; starting with 2N*dip = 1. 225s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 12]; l_lcm/gcm = ( 6, 3) 225s while(gcm[ix] != lcm[iv]) : 225s L(3,2) --> ix = 2, iv = 3 225s G(2,3) --> ix = 1, iv = 3 225s --> ix = 1, iv = 4 225s --> ix = 1, iv = 5 225s --> ix = 1, iv = 6 225s calculating dip .. (dip_l, dip_u) = (2, 1) -> new larger dip 2 (j_best = 2) 225s 'dip': LOOP-BEGIN: 2n*D= 2 [low,high] = [ 4, 9]; l_lcm/gcm = ( 6, 2) 225s while(gcm[ix] != lcm[iv]) : 225s L(2,2) --> ix = 1, iv = 3 225s L(2,3) --> ix = 1, iv = 4 225s --> ix = 1, iv = 5 225s --> ix = 1, iv = 6 225s 225s Call: 225s dip(x = 10000 * ex1, full.result = TRUE, debug = 2) 225s 225s n = 12. Dip statistic, D_n = 0.08333333 = 2/(2n) 225s Modal interval [xL, xU] = [x[4], x[9]] = [2898, 5661] 225s GCM and LCM have 2 and 6 nodes inside [xL, xU], respectively. 225s > str(D1, digits = 10, vec.len = 12) 225s List of 15 225s $ call : language dip(x = 10000 * ex1, full.result = TRUE, debug = 2) 225s $ x : num [1:12] 198 198 1961 2898 3184 3687 4336 4987 5661 6530 7476 8555 225s $ n : int 12 225s $ dip : num 0.08333333333 225s $ lo.hi : int [1:2] 4 9 225s $ ifault : int 0 225s $ gcm : int [1:2] 9 4 225s $ lcm : int [1:6] 4 5 6 7 8 9 225s $ mn : int [1:12] 1 1 1 1 4 4 4 4 4 4 4 4 225s $ mj : int [1:12] 2 9 6 5 6 7 8 9 10 11 12 12 225s $ min.is.0 : logi FALSE 225s $ debug : int 2 225s $ xl : num 2898 225s $ xu : num 5661 225s $ full.result: logi TRUE 225s - attr(*, "class")= chr "dip" 225s > 225s > (D2 <- dip(10000*ex2, full=TRUE, debug=2)) 225s dip() in C: n = 12; starting with 2N*dip = 1. 225s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 1, 12]; l_lcm/gcm = ( 6, 4) 225s while(gcm[ix] != lcm[iv]) : 225s G(3,2) --> ix = 2, iv = 2 225s G(2,2) --> ix = 1, iv = 2 225s --> ix = 1, iv = 3 225s --> ix = 1, iv = 4 225s --> ix = 1, iv = 5 225s --> ix = 1, iv = 6 225s calculating dip .. (dip_l, dip_u) = (1, 1) 225s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 3, 8]; l_lcm/gcm = ( 6, 2) 225s while(gcm[ix] != lcm[iv]) : 225s L(2,2) --> ix = 1, iv = 3 225s L(2,3) --> ix = 1, iv = 4 225s --> ix = 1, iv = 5 225s --> ix = 1, iv = 6 225s calculating dip .. (dip_l, dip_u) = (0, 1) 225s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 3, 5]; l_lcm/gcm = ( 3, 2) 225s while(gcm[ix] != lcm[iv]) : 225s L(2,2) --> ix = 1, iv = 3 225s calculating dip .. (dip_l, dip_u) = (0, 1) 225s 'dip': LOOP-BEGIN: 2n*D= 1 [low,high] = [ 3, 4]; l_lcm/gcm = ( 2, 2) 225s ** (l_lcm,l_gcm) = (2,2) ==> d := 1 225s calculating dip .. (dip_l, dip_u) = (0, 0) 225s No improvement in low = 3 nor high = 4 --> END 225s 225s Call: 225s dip(x = 10000 * ex2, full.result = TRUE, debug = 2) 225s 225s n = 12. Dip statistic, D_n = 0.04166667 = 1/(2n) 225s Modal interval [xL, xU] = [x[3], x[4]] = [2898, 3184] 225s GCM and LCM have 2 and 2 nodes inside [xL, xU], respectively. 225s > str(D2, digits = 10, vec.len = 12) 225s List of 15 225s $ call : language dip(x = 10000 * ex2, full.result = TRUE, debug = 2) 225s $ x : num [1:12] 198 1961 2898 3184 3687 4336 4987 5661 6530 7476 8555 9912 225s $ n : int 12 225s $ dip : num 0.04166666667 225s $ lo.hi : int [1:2] 3 4 225s $ ifault : int 0 225s $ gcm : int [1:2] 4 3 225s $ lcm : int [1:2] 3 4 225s $ mn : int [1:12] 1 1 2 3 3 3 3 3 3 3 3 3 225s $ mj : int [1:12] 8 5 4 5 6 7 8 9 10 11 12 12 225s $ min.is.0 : logi FALSE 225s $ debug : int 2 225s $ xl : num 2898 225s $ xu : num 3184 225s $ full.result: logi TRUE 225s - attr(*, "class")= chr "dip" 225s > 225s BEGIN TEST sim1.R 225s 225s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 225s Copyright (C) 2024 The R Foundation for Statistical Computing 225s Platform: aarch64-unknown-linux-gnu (64-bit) 225s 225s R is free software and comes with ABSOLUTELY NO WARRANTY. 225s You are welcome to redistribute it under certain conditions. 225s Type 'license()' or 'licence()' for distribution details. 225s 225s R is a collaborative project with many contributors. 225s Type 'contributors()' for more information and 225s 'citation()' on how to cite R or R packages in publications. 225s 225s Type 'demo()' for some demos, 'help()' for on-line help, or 225s 'help.start()' for an HTML browser interface to help. 225s Type 'q()' to quit R. 225s 225s > #### Very small scale simulation to make the point 225s > #### --> See ../stuff/ for much more 225s > library(diptest) 225s > 225s > P.p <- c(1, 5, 10, 25)/100 225s > (P.p <- c(P.p, 1/2, rev(1 - P.p))) 225s [1] 0.01 0.05 0.10 0.25 0.50 0.75 0.90 0.95 0.99 225s > 225s > N.sim <- 9999 225s > set.seed(94) 225s > .p0 <- proc.time() 225s > dU100 <- replicate(N.sim, dip(runif(100))) 228s > cat('Time elapsed: ', (p1 <- proc.time()) - .p0,'\n'); .p0 <- p1 228s Time elapsed: 2.991 0.06 3.054 0 0 228s > ## Lynne (2003: P IV, 1.6 GHz): ~7 s 228s > ## 2010 (AMD Phenom II X4 925): 1.3 s 228s > 228s > 100 * round(q100 <- quantile(dU100, p = P.p), 4) 228s 1% 5% 10% 25% 50% 75% 90% 95% 99% 228s 2.29 2.56 2.75 3.08 3.54 4.12 4.70 5.09 5.90 228s > 228s > plot(density(sqrt(100) * dU100), lwd = 2, col=2, 228s + main = expression("Dip distribution" ~~ 228s + list(sqrt(n)* D[n], ~ n == 100))) 229s > abline(h=0, col="dark gray", lty=3) 229s > 229s > round(1e4 * quantile(dU100, p = seq(0,1, by = 0.01), names = FALSE)) 229s [1] 191 229 239 246 252 256 261 265 268 272 275 277 280 282 285 287 289 292 229s [19] 294 296 298 300 302 304 305 308 310 312 314 315 317 319 321 323 325 327 229s [37] 329 331 332 334 336 338 340 341 343 345 347 349 351 352 354 356 358 360 229s [55] 362 364 366 368 370 372 374 376 379 381 383 385 387 390 393 395 397 400 229s [73] 403 406 409 412 415 418 421 424 427 431 434 438 442 446 450 455 460 464 229s [91] 470 476 483 489 499 509 520 539 562 590 773 229s > 229s > ##--- an extreme unimodal case -- i.e. very small dip(): 229s > set.seed(60); x <- rexp(301,1)^3 229s > hist(x) 229s > (dt.x <- dip.test(x)) 229s 229s Hartigans' dip test for unimodality / multimodality 229s 229s data: x 229s D = 0.0072617, p-value = 1 229s alternative hypothesis: non-unimodal, i.e., at least bimodal 229s 229s > (dt2 <- dip.test(x, simulate = TRUE)) 229s 229s Hartigans' dip test for unimodality / multimodality with simulated 229s p-value (based on 2000 replicates) 229s 229s data: x 229s D = 0.0072617, p-value = 1 229s alternative hypothesis: non-unimodal, i.e., at least bimodal 229s 229s > (dt3 <- dip.test(x, simulate = TRUE, B = 10000)) 233s 233s Hartigans' dip test for unimodality / multimodality with simulated 233s p-value (based on 10000 replicates) 233s 233s data: x 233s D = 0.0072617, p-value = 1 233s alternative hypothesis: non-unimodal, i.e., at least bimodal 233s 233s > stopifnot(dt.x$p.value == 1,## <- gave NA earlier 233s + dt2$p.value == 1, 233s + dt3$p.value == 1) 233s > 233s > 233s > cat('Time elapsed: ', proc.time() - .p0,'\n') # "stats" 233s Time elapsed: 4.307 0.039 4.367 0 0 233s > 233s autopkgtest [18:32:44]: test run-unit-test: -----------------------] 234s run-unit-test PASS 234s autopkgtest [18:32:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 234s autopkgtest [18:32:45]: test pkg-r-autopkgtest: preparing testbed 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 239s Starting pkgProblemResolver with broken count: 0 239s Starting 2 pkgProblemResolver with broken count: 0 239s Done 241s The following additional packages will be installed: 241s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 241s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 241s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 241s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 241s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 241s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 241s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 241s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 241s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 241s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 241s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 241s Suggested packages: 241s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 241s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 241s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 241s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 241s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 241s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 241s texlive-latex-recommended texlive-latex-extra texinfo 241s Recommended packages: 241s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 241s The following NEW packages will be installed: 241s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 241s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 241s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 241s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 241s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 241s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 241s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 241s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 241s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 241s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 241s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 241s pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 241s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. 241s Need to get 92.8 MB/92.8 MB of archives. 241s After this operation, 343 MB of additional disk space will be used. 241s Get:1 /tmp/autopkgtest.pDyQJe/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 242s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 242s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 242s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 242s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 242s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 242s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 242s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 242s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 242s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 242s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 243s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 243s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 243s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 243s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 243s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 243s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 243s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 243s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 243s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 243s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 243s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 243s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 243s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 244s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 244s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 244s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 244s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 244s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 245s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 245s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 245s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 245s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 245s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 245s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 245s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 245s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 245s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 245s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 245s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 245s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 245s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 245s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 245s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 246s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 246s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 246s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 246s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 246s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 246s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 246s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 246s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 246s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 246s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 246s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 246s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 246s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 246s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 246s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 246s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 246s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 246s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 247s Fetched 92.8 MB in 4s (20.8 MB/s) 248s Selecting previously unselected package libc-dev-bin. 248s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77926 files and directories currently installed.) 248s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 248s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 248s Selecting previously unselected package linux-libc-dev:arm64. 248s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 248s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 249s Selecting previously unselected package libcrypt-dev:arm64. 249s Preparing to unpack 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unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 255s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 255s Selecting previously unselected package gcc-aarch64-linux-gnu. 256s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 256s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 256s Selecting previously unselected package gcc. 256s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 256s Unpacking gcc (4:13.2.0-7ubuntu1) ... 256s Selecting previously unselected package libstdc++-13-dev:arm64. 256s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 256s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 257s Selecting previously unselected package g++-13-aarch64-linux-gnu. 257s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 257s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 258s Selecting previously unselected package g++-13. 258s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 258s Unpacking g++-13 (13.2.0-17ubuntu2) ... 258s Selecting previously unselected package g++-aarch64-linux-gnu. 258s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 258s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 258s Selecting previously unselected package g++. 258s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 258s Unpacking g++ (4:13.2.0-7ubuntu1) ... 258s Selecting previously unselected package build-essential. 258s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 258s Unpacking build-essential (12.10ubuntu1) ... 258s Selecting previously unselected package dctrl-tools. 258s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 258s Unpacking dctrl-tools (2.24-3build2) ... 258s Selecting previously unselected package libgfortran-13-dev:arm64. 258s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 258s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 259s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 259s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 259s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 260s Selecting previously unselected package gfortran-13. 260s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 260s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 260s Selecting previously unselected package gfortran-aarch64-linux-gnu. 260s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 260s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 260s Selecting previously unselected package gfortran. 260s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 260s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 260s Selecting previously unselected package icu-devtools. 260s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 260s Unpacking icu-devtools (74.2-1ubuntu1) ... 260s Selecting previously unselected package libblas-dev:arm64. 260s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 260s Unpacking libblas-dev:arm64 (3.12.0-3) ... 260s Selecting previously unselected package libbz2-dev:arm64. 260s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 260s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 261s Selecting previously unselected package libicu-dev:arm64. 261s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 261s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 262s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 262s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 262s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 262s Selecting previously unselected package libjpeg8-dev:arm64. 262s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 262s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 262s Selecting previously unselected package libjpeg-dev:arm64. 262s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 262s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 262s Selecting previously unselected package liblapack-dev:arm64. 262s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 262s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 263s Selecting previously unselected package libncurses-dev:arm64. 263s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 263s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 263s Selecting previously unselected package libpcre2-16-0:arm64. 263s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 263s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 264s Selecting previously unselected package libpcre2-32-0:arm64. 264s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 264s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 264s Selecting previously unselected package libpcre2-posix3:arm64. 264s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 264s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 264s Selecting previously unselected package libpcre2-dev:arm64. 264s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 264s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 264s Selecting previously unselected package libpkgconf3:arm64. 264s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ... 264s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 264s Selecting previously unselected package zlib1g-dev:arm64. 264s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 264s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 264s Selecting previously unselected package libpng-dev:arm64. 264s Preparing to unpack .../53-libpng-dev_1.6.43-3_arm64.deb ... 264s Unpacking libpng-dev:arm64 (1.6.43-3) ... 264s Selecting previously unselected package libreadline-dev:arm64. 264s Preparing to unpack .../54-libreadline-dev_8.2-3.1_arm64.deb ... 264s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 265s Selecting previously unselected package pkgconf-bin. 265s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ... 265s Unpacking pkgconf-bin (1.8.1-2) ... 265s Selecting previously unselected package pkgconf:arm64. 265s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ... 265s Unpacking pkgconf:arm64 (1.8.1-2) ... 265s Selecting previously unselected package pkg-config:arm64. 265s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ... 265s Unpacking pkg-config:arm64 (1.8.1-2) ... 265s Selecting previously unselected package liblzma-dev:arm64. 265s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ... 265s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 265s Selecting previously unselected package r-base-dev. 265s Preparing to unpack .../59-r-base-dev_4.3.3-2build1_all.deb ... 265s Unpacking r-base-dev (4.3.3-2build1) ... 265s Selecting previously unselected package pkg-r-autopkgtest. 265s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 265s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 265s Selecting previously unselected package autopkgtest-satdep. 265s Preparing to unpack .../61-2-autopkgtest-satdep.deb ... 265s Unpacking autopkgtest-satdep (0) ... 265s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 265s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 265s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 265s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 265s Setting up libpkgconf3:arm64 (1.8.1-2) ... 265s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 265s Setting up libmpc3:arm64 (1.3.1-1) ... 265s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 265s Setting up icu-devtools (74.2-1ubuntu1) ... 265s Setting up pkgconf-bin (1.8.1-2) ... 265s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 265s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 265s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 265s Setting up libnsl-dev:arm64 (1.3.0-3) ... 265s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 265s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 265s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 266s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 266s Setting up libisl23:arm64 (0.26-3) ... 266s Setting up libc-dev-bin (2.39-0ubuntu2) ... 266s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 266s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 266s Setting up libblas-dev:arm64 (3.12.0-3) ... 266s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 266s Setting up dctrl-tools (2.24-3build2) ... 266s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 266s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 266s Setting up pkgconf:arm64 (1.8.1-2) ... 266s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 266s Setting up liblapack-dev:arm64 (3.12.0-3) ... 266s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 266s Setting up pkg-config:arm64 (1.8.1-2) ... 266s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 266s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 266s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 266s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 266s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 266s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 266s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 266s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 266s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 266s Setting up cpp-13 (13.2.0-17ubuntu2) ... 266s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 266s Setting up libreadline-dev:arm64 (8.2-3.1) ... 266s Setting up gcc-13 (13.2.0-17ubuntu2) ... 266s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 266s Setting up cpp (4:13.2.0-7ubuntu1) ... 266s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 266s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 266s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 266s Setting up g++-13 (13.2.0-17ubuntu2) ... 266s Setting up libpng-dev:arm64 (1.6.43-3) ... 266s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 266s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 266s Setting up gcc (4:13.2.0-7ubuntu1) ... 266s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 266s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 266s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 266s Setting up gfortran (4:13.2.0-7ubuntu1) ... 266s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 266s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 266s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 266s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 266s Setting up g++ (4:13.2.0-7ubuntu1) ... 266s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 266s Setting up build-essential (12.10ubuntu1) ... 266s Setting up r-base-dev (4.3.3-2build1) ... 266s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 266s Setting up autopkgtest-satdep (0) ... 266s Processing triggers for man-db (2.12.0-3) ... 268s Processing triggers for install-info (7.1-3) ... 268s Processing triggers for libc-bin (2.39-0ubuntu2) ... 276s (Reading database ... 81485 files and directories currently installed.) 276s Removing autopkgtest-satdep (0) ... 277s autopkgtest [18:33:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 277s autopkgtest [18:33:28]: test pkg-r-autopkgtest: [----------------------- 278s Test: Try to load the R library diptest 278s 278s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 278s Copyright (C) 2024 The R Foundation for Statistical Computing 278s Platform: aarch64-unknown-linux-gnu (64-bit) 278s 278s R is free software and comes with ABSOLUTELY NO WARRANTY. 278s You are welcome to redistribute it under certain conditions. 278s Type 'license()' or 'licence()' for distribution details. 278s 278s R is a collaborative project with many contributors. 278s Type 'contributors()' for more information and 278s 'citation()' on how to cite R or R packages in publications. 278s 278s Type 'demo()' for some demos, 'help()' for on-line help, or 278s 'help.start()' for an HTML browser interface to help. 278s Type 'q()' to quit R. 278s 279s > library('diptest') 279s > 279s > 279s Other tests are currently unsupported! 279s They will be progressively added. 279s autopkgtest [18:33:30]: test pkg-r-autopkgtest: -----------------------] 280s pkg-r-autopkgtest PASS 280s autopkgtest [18:33:31]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 280s autopkgtest [18:33:31]: @@@@@@@@@@@@@@@@@@@@ summary 280s run-unit-test PASS 280s pkg-r-autopkgtest PASS 293s Creating nova instance adt-noble-arm64-r-cran-diptest-20240316-181458-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...