0s autopkgtest [17:53:33]: starting date and time: 2024-03-16 17:53:33+0000 0s autopkgtest [17:53:33]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:53:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hfynzu0a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-bdsmatrix --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-12.secgroup --name adt-noble-arm64-r-cran-bdsmatrix-20240316-175333-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 198s autopkgtest [17:56:51]: testbed dpkg architecture: arm64 198s autopkgtest [17:56:51]: testbed apt version: 2.7.12 198s autopkgtest [17:56:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 198s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 199s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 199s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 199s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 199s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 199s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 199s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 199s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 199s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 199s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 199s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 199s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 199s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 201s Fetched 9060 kB in 2s (5198 kB/s) 201s Reading package lists... 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Calculating upgrade... 208s The following packages will be REMOVED: 208s libglib2.0-0 libssl3 208s The following NEW packages will be installed: 208s libglib2.0-0t64 libssl3t64 xdg-user-dirs 208s The following packages have been kept back: 208s curl 208s The following packages will be upgraded: 208s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 208s ubuntu-minimal ubuntu-standard 209s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 209s Need to get 4613 kB of archives. 209s After this operation, 211 kB of additional disk space will be used. 209s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 209s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 209s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 209s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 209s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 209s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 209s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 209s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 209s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 209s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 211s Fetched 4613 kB in 1s (5546 kB/s) 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 211s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 211s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 211s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 211s udisks2 depends on libglib2.0-0 (>= 2.77.0). 211s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 211s python3-gi depends on libglib2.0-0 (>= 2.77.0). 211s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 211s netplan.io depends on libglib2.0-0 (>= 2.70.0). 211s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 211s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 211s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 211s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 211s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 211s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 211s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 211s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 211s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 211s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 211s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 211s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 211s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 211s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 211s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 211s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 211s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 211s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 211s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 211s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 211s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 211s fwupd depends on libglib2.0-0 (>= 2.79.0). 211s bolt depends on libglib2.0-0 (>= 2.56.0). 211s 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 212s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 212s Selecting previously unselected package libglib2.0-0t64:arm64. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 212s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 212s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 212s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 212s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 212s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 212s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 212s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 212s wget depends on libssl3 (>= 3.0.0). 212s u-boot-tools depends on libssl3 (>= 3.0.0). 212s tnftp depends on libssl3 (>= 3.0.0). 212s tcpdump depends on libssl3 (>= 3.0.0). 212s systemd-resolved depends on libssl3 (>= 3.0.0). 212s systemd depends on libssl3 (>= 3.0.0). 212s sudo depends on libssl3 (>= 3.0.0). 212s sbsigntool depends on libssl3 (>= 3.0.0). 212s rsync depends on libssl3 (>= 3.0.0). 212s python3-cryptography depends on libssl3 (>= 3.0.0). 212s openssh-server depends on libssl3 (>= 3.0.10). 212s openssh-client depends on libssl3 (>= 3.0.10). 212s mtd-utils depends on libssl3 (>= 3.0.0). 212s mokutil depends on libssl3 (>= 3.0.0). 212s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 212s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 212s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 212s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 212s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 212s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 212s libnvme1 depends on libssl3 (>= 3.0.0). 212s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 212s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 212s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 212s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 212s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 212s kmod depends on libssl3 (>= 3.0.0). 212s dhcpcd-base depends on libssl3 (>= 3.0.0). 212s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 212s 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 212s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 212s Selecting previously unselected package libssl3t64:arm64. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 212s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 212s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 212s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 212s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 212s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 212s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 212s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 212s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 212s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 212s Unpacking ubuntu-minimal (1.536) over (1.535) ... 212s Selecting previously unselected package xdg-user-dirs. 212s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 212s Unpacking xdg-user-dirs (0.18-1) ... 212s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 212s Unpacking ubuntu-standard (1.536) over (1.535) ... 212s Setting up ubuntu-minimal (1.536) ... 212s Setting up xdg-user-dirs (0.18-1) ... 212s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 212s Setting up libtirpc-common (1.3.4+ds-1.1) ... 212s Setting up ubuntu-standard (1.536) ... 212s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 213s No schema files found: doing nothing. 213s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 213s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 213s Setting up openssl (3.0.13-0ubuntu1) ... 213s Setting up readline-common (8.2-3.1) ... 213s Processing triggers for man-db (2.12.0-3) ... 213s Processing triggers for install-info (7.1-3) ... 214s Processing triggers for libc-bin (2.39-0ubuntu2) ... 214s Reading package lists... 214s Building dependency tree... 214s Reading state information... 215s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 216s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 216s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 216s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 216s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 217s Reading package lists... 217s Reading package lists... 218s Building dependency tree... 218s Reading state information... 218s Calculating upgrade... 219s The following packages have been kept back: 219s curl 219s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 219s Reading package lists... 219s Building dependency tree... 219s Reading state information... 220s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 222s autopkgtest [17:57:15]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 223s autopkgtest [17:57:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bdsmatrix 225s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-bdsmatrix 1.3-6-1 (dsc) [2097 B] 225s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-bdsmatrix 1.3-6-1 (tar) [48.1 kB] 225s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-bdsmatrix 1.3-6-1 (diff) [2424 B] 226s gpgv: Signature made Wed Jun 8 09:44:52 2022 UTC 226s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 226s gpgv: issuer "tille@debian.org" 226s gpgv: Can't check signature: No public key 226s dpkg-source: warning: cannot verify inline signature for ./r-cran-bdsmatrix_1.3-6-1.dsc: no acceptable signature found 226s autopkgtest [17:57:19]: testing package r-cran-bdsmatrix version 1.3-6-1 226s autopkgtest [17:57:19]: build not needed 227s autopkgtest [17:57:20]: test run-unit-test: preparing testbed 229s Reading package lists... 230s Building dependency tree... 230s Reading state information... 230s Starting pkgProblemResolver with broken count: 0 230s Starting 2 pkgProblemResolver with broken count: 0 230s Done 231s The following additional packages will be installed: 231s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 231s libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 231s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 231s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 231s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 231s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 231s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 231s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 231s r-cran-bdsmatrix unzip x11-common xdg-utils zip 231s Suggested packages: 231s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 231s Recommended packages: 231s r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl 231s libx11-protocol-perl x11-utils x11-xserver-utils 231s The following packages will be REMOVED: 231s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 231s The following NEW packages will be installed: 231s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 231s fonts-dejavu-mono libblas3 libcairo2 libcurl4t64 libdatrie1 libdeflate0 231s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 231s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 231s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 231s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libtcl8.6 231s libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 libwebp7 libxcb-render0 231s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 231s r-cran-bdsmatrix unzip x11-common xdg-utils zip 231s The following packages will be upgraded: 231s curl 231s 1 upgraded, 51 newly installed, 5 to remove and 0 not upgraded. 231s Need to get 37.9 MB/37.9 MB of archives. 231s After this operation, 75.8 MB of additional disk space will be used. 231s Get:1 /tmp/autopkgtest.po6o00/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 231s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 232s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 232s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 232s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 232s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 232s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 232s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 232s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 232s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 232s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 232s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 232s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 232s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 232s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 232s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 232s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 232s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 232s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 232s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 232s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 232s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 232s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 232s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 232s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 232s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 232s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 232s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 232s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 232s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 232s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 232s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 232s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 232s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 232s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 232s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 232s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 232s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 232s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 232s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 232s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 232s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 232s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 232s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 232s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 232s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 232s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 232s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 232s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 232s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 232s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 233s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bdsmatrix arm64 1.3-6-1 [292 kB] 234s Preconfiguring packages ... 234s Fetched 37.9 MB in 2s (20.3 MB/s) 234s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 234s wget depends on libpsl5 (>= 0.16.0). 234s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 234s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 234s 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 234s Removing libpsl5:arm64 (0.21.2-1build1) ... 234s Selecting previously unselected package libpsl5t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 234s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 234s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 234s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 234s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 234s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 234s Selecting previously unselected package libcurl4t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 234s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 234s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 234s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 234s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 234s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 234s 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 234s Removing libpng16-16:arm64 (1.6.43-1) ... 234s Selecting previously unselected package libpng16-16t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 234s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 234s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 234s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 234s parted depends on libreadline8 (>= 6.0). 234s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 234s gpgsm depends on libreadline8 (>= 6.0). 234s gpgconf depends on libreadline8 (>= 6.0). 234s gpg depends on libreadline8 (>= 6.0). 234s gawk depends on libreadline8 (>= 6.0). 234s fdisk depends on libreadline8 (>= 6.0). 234s 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 234s Removing libreadline8:arm64 (8.2-3) ... 234s Selecting previously unselected package libreadline8t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 234s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 234s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 234s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 234s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 234s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 234s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 234s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 234s lsof depends on libtirpc3 (>= 1.0.2). 234s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 234s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 234s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 234s iproute2 depends on libtirpc3 (>= 1.0.2). 234s 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 234s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 234s Selecting previously unselected package libtirpc3t64:arm64. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 234s Preparing to unpack .../00-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 235s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 235s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 235s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 235s Selecting previously unselected package fonts-dejavu-mono. 235s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 235s Unpacking fonts-dejavu-mono (2.37-8) ... 235s Selecting previously unselected package fonts-dejavu-core. 235s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 235s Unpacking fonts-dejavu-core (2.37-8) ... 235s Selecting previously unselected package fontconfig-config. 235s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 235s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 235s Selecting previously unselected package libfontconfig1:arm64. 235s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 235s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 235s Selecting previously unselected package fontconfig. 235s Preparing to unpack .../05-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 235s Unpacking fontconfig (2.15.0-1ubuntu1) ... 235s Selecting previously unselected package libblas3:arm64. 235s Preparing to unpack .../06-libblas3_3.12.0-3_arm64.deb ... 235s Unpacking libblas3:arm64 (3.12.0-3) ... 235s Selecting previously unselected package libpixman-1-0:arm64. 235s Preparing to unpack .../07-libpixman-1-0_0.42.2-1_arm64.deb ... 235s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 235s Selecting previously unselected package libxcb-render0:arm64. 235s Preparing to unpack .../08-libxcb-render0_1.15-1_arm64.deb ... 235s Unpacking libxcb-render0:arm64 (1.15-1) ... 235s Selecting previously unselected package libxcb-shm0:arm64. 235s Preparing to unpack .../09-libxcb-shm0_1.15-1_arm64.deb ... 235s Unpacking libxcb-shm0:arm64 (1.15-1) ... 235s Selecting previously unselected package libxrender1:arm64. 235s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 235s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 235s Selecting previously unselected package libcairo2:arm64. 235s Preparing to unpack .../11-libcairo2_1.18.0-1_arm64.deb ... 235s Unpacking libcairo2:arm64 (1.18.0-1) ... 235s Selecting previously unselected package libdatrie1:arm64. 235s Preparing to unpack .../12-libdatrie1_0.2.13-3_arm64.deb ... 235s Unpacking libdatrie1:arm64 (0.2.13-3) ... 235s Selecting previously unselected package libdeflate0:arm64. 235s Preparing to unpack .../13-libdeflate0_1.19-1_arm64.deb ... 235s Unpacking libdeflate0:arm64 (1.19-1) ... 235s Selecting previously unselected package libgfortran5:arm64. 235s Preparing to unpack .../14-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libgomp1:arm64. 235s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libgraphite2-3:arm64. 235s Preparing to unpack .../16-libgraphite2-3_1.3.14-2_arm64.deb ... 235s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 235s Selecting previously unselected package libharfbuzz0b:arm64. 235s Preparing to unpack .../17-libharfbuzz0b_8.3.0-2_arm64.deb ... 235s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 235s Selecting previously unselected package x11-common. 235s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu2_all.deb ... 235s Unpacking x11-common (1:7.7+23ubuntu2) ... 235s Selecting previously unselected package libice6:arm64. 235s Preparing to unpack .../19-libice6_2%3a1.0.10-1build2_arm64.deb ... 235s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 235s Selecting previously unselected package libjpeg-turbo8:arm64. 235s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 235s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 235s Selecting previously unselected package libjpeg8:arm64. 235s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_arm64.deb ... 235s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 236s Selecting previously unselected package liblapack3:arm64. 236s Preparing to unpack .../22-liblapack3_3.12.0-3_arm64.deb ... 236s Unpacking liblapack3:arm64 (3.12.0-3) ... 236s Selecting previously unselected package liblerc4:arm64. 236s Preparing to unpack .../23-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 236s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 236s Selecting previously unselected package libthai-data. 236s Preparing to unpack .../24-libthai-data_0.1.29-2_all.deb ... 236s Unpacking libthai-data (0.1.29-2) ... 236s Selecting previously unselected package libthai0:arm64. 236s Preparing to unpack .../25-libthai0_0.1.29-2_arm64.deb ... 236s Unpacking libthai0:arm64 (0.1.29-2) ... 236s Selecting previously unselected package libpango-1.0-0:arm64. 236s Preparing to unpack .../26-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 236s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 236s Selecting previously unselected package libpangoft2-1.0-0:arm64. 236s Preparing to unpack .../27-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 236s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 236s Selecting previously unselected package libpangocairo-1.0-0:arm64. 236s Preparing to unpack .../28-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 236s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 236s Selecting previously unselected package libpaper1:arm64. 236s Preparing to unpack .../29-libpaper1_1.1.29_arm64.deb ... 236s Unpacking libpaper1:arm64 (1.1.29) ... 236s Selecting previously unselected package libpaper-utils. 236s Preparing to unpack .../30-libpaper-utils_1.1.29_arm64.deb ... 236s Unpacking libpaper-utils (1.1.29) ... 236s Selecting previously unselected package libsharpyuv0:arm64. 236s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_arm64.deb ... 236s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 236s Selecting previously unselected package libsm6:arm64. 236s Preparing to unpack .../32-libsm6_2%3a1.2.3-1build2_arm64.deb ... 236s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 236s Selecting previously unselected package libtcl8.6:arm64. 236s Preparing to unpack .../33-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 236s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 236s Selecting previously unselected package libjbig0:arm64. 236s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 236s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 236s Selecting previously unselected package libwebp7:arm64. 237s Preparing to unpack .../35-libwebp7_1.3.2-0.4_arm64.deb ... 237s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 237s Selecting previously unselected package libtiff6:arm64. 237s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 237s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 237s Selecting previously unselected package libxft2:arm64. 237s Preparing to unpack .../37-libxft2_2.3.6-1_arm64.deb ... 237s Unpacking libxft2:arm64 (2.3.6-1) ... 237s Selecting previously unselected package libxss1:arm64. 237s Preparing to unpack .../38-libxss1_1%3a1.2.3-1build2_arm64.deb ... 237s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 237s Selecting previously unselected package libtk8.6:arm64. 237s Preparing to unpack .../39-libtk8.6_8.6.13-2_arm64.deb ... 237s Unpacking libtk8.6:arm64 (8.6.13-2) ... 237s Selecting previously unselected package libxt6t64:arm64. 237s Preparing to unpack .../40-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 237s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 237s Selecting previously unselected package zip. 237s Preparing to unpack .../41-zip_3.0-13_arm64.deb ... 237s Unpacking zip (3.0-13) ... 237s Selecting previously unselected package unzip. 237s Preparing to unpack .../42-unzip_6.0-28ubuntu3_arm64.deb ... 237s Unpacking unzip (6.0-28ubuntu3) ... 237s Selecting previously unselected package xdg-utils. 237s Preparing to unpack .../43-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 237s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 237s Selecting previously unselected package r-base-core. 237s Preparing to unpack .../44-r-base-core_4.3.3-2build1_arm64.deb ... 237s Unpacking r-base-core (4.3.3-2build1) ... 237s Selecting previously unselected package r-cran-bdsmatrix. 237s Preparing to unpack .../45-r-cran-bdsmatrix_1.3-6-1_arm64.deb ... 237s Unpacking r-cran-bdsmatrix (1.3-6-1) ... 237s Selecting previously unselected package autopkgtest-satdep. 237s Preparing to unpack .../46-1-autopkgtest-satdep.deb ... 237s Unpacking autopkgtest-satdep (0) ... 237s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 237s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 237s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 237s Setting up libpaper1:arm64 (1.1.29) ... 237s 237s Creating config file /etc/papersize with new version 238s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 238s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 238s Setting up libdatrie1:arm64 (0.2.13-3) ... 238s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 238s Setting up libxcb-render0:arm64 (1.15-1) ... 238s Setting up unzip (6.0-28ubuntu3) ... 238s Setting up x11-common (1:7.7+23ubuntu2) ... 238s 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backsolvetest.R 249s 249s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 249s Copyright (C) 2024 The R Foundation for Statistical Computing 249s Platform: aarch64-unknown-linux-gnu (64-bit) 249s 249s R is free software and comes with ABSOLUTELY NO WARRANTY. 249s You are welcome to redistribute it under certain conditions. 249s Type 'license()' or 'licence()' for distribution details. 249s 249s R is a collaborative project with many contributors. 249s Type 'contributors()' for more information and 249s 'citation()' on how to cite R or R packages in publications. 249s 249s Type 'demo()' for some demos, 'help()' for on-line help, or 249s 'help.start()' for an HTML browser interface to help. 249s Type 'q()' to quit R. 249s 249s > library(bdsmatrix) 249s 249s Attaching package: 'bdsmatrix' 249s 249s > # 249s > # A test of the backsolve function 249s > # 249s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 249s The following object is masked from 'package:base': 249s 249s backsolve 249s 249s > 249s > tmat <- matrix(rep(1:5,5), 5, 5) 249s > tmat <- tmat + t(tmat) 249s > diag(tmat) <- diag(tmat) + 10 249s > 249s > gt <- gchol(tmat) 249s > g1 <- as.matrix(gt) 249s > gd <- diag(sqrt(diag(gt))) 249s > gc <- gd %*% t(g1) #usual cholesky form 249s > 249s > xmat <- cbind(1:5, 11:15) 249s > 249s > s1 <- backsolve(gt, xmat, upper=TRUE) #the default 249s > aeq(gd %*% t(g1) %*% s1, xmat) 249s [1] TRUE 249s > all.equal(s1, backsolve(gc, xmat)) 249s [1] TRUE 249s > 249s > s2 <- backsolve(gt, xmat, upper=FALSE) 249s > aeq(g1 %*% gd %*% s2, xmat) 249s [1] TRUE 249s > all.equal(backsolve(gt,xmat, upper=F), backsolve(t(gc),xmat, upper=F)) 249s [1] TRUE 249s > 249s > 249s > # Now for bdsmatrix objects 249s > tmat <- bdsmatrix(c(3,2,2,4), 249s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 249s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 249s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 249s > dimnames(tmat) <- list(NULL, letters[1:13]) 249s > smat <- as.matrix(tmat) 249s > 249s > gt <- gchol(tmat) 249s > gs <- gchol(smat) 249s > 249s > xmat <- cbind(1:13, 1:13*2 + 3) 249s > 249s > s1 <- backsolve(gt, xmat) 249s > s2 <- backsolve(gs, xmat) 249s > s3 <- backsolve(gt, xmat, upper=FALSE) 249s > s4 <- backsolve(gs, xmat, upper=FALSE) 249s > 249s > aeq(s1, s2) 249s [1] TRUE 249s > aeq(s3, s4) 249s [1] TRUE 249s > 249s > g1 <- as.matrix(gt) 249s > gd <- diag(sqrt(diag(gt))) 249s > aeq(gd %*% t(g1) %*% s1, xmat) 249s [1] TRUE 249s > aeq(g1 %*% gd %*% s3, xmat) 249s [1] TRUE 249s > 249s BEGIN TEST bdstest.R 249s 249s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 249s Copyright (C) 2024 The R Foundation for Statistical Computing 249s Platform: aarch64-unknown-linux-gnu (64-bit) 249s 249s R is free software and comes with ABSOLUTELY NO WARRANTY. 249s You are welcome to redistribute it under certain conditions. 249s Type 'license()' or 'licence()' for distribution details. 249s 249s R is a collaborative project with many contributors. 249s Type 'contributors()' for more information and 249s 'citation()' on how to cite R or R packages in publications. 249s 249s Type 'demo()' for some demos, 'help()' for on-line help, or 249s 'help.start()' for an HTML browser interface to help. 249s Type 'q()' to quit R. 249s 249s > # 249s > # Test out math aspects 249s > # 249s > library(bdsmatrix) 250s 250s Attaching package: 'bdsmatrix' 250s 250s The following object is masked from 'package:base': 250s 250s backsolve 250s 250s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 250s > 250s > tmat <- bdsmatrix(c(3,2,2,4), 250s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 250s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 250s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 250s > dimnames(tmat) <- list(NULL, letters[1:13]) 250s > 250s > smat <- as.matrix(tmat) 250s > 250s > aeq(smat+2.1, as.matrix(tmat+2.1)) 250s [1] TRUE 250s > aeq(smat/2.1, as.matrix(tmat/2.1)) 250s [1] TRUE 250s > aeq(smat-2.1, as.matrix(tmat-2.1)) 250s [1] TRUE 250s > aeq(smat*2.1, as.matrix(tmat*2.1)) 250s [1] TRUE 250s > aeq(round(smat,1), as.matrix(round(tmat,1))) 250s [1] TRUE 250s > aeq(exp(smat), as.matrix(exp(tmat))) 250s [1] TRUE 250s > 250s > aeq(sum(smat), sum(tmat)) 250s [1] TRUE 250s > aeq(prod(smat), prod(tmat)) 250s [1] TRUE 250s > aeq(sum(smat+3), sum(tmat+3)) 250s [1] TRUE 250s > aeq(prod(smat+2), prod(tmat+2)) 250s [1] TRUE 250s > aeq(range(smat), range(tmat)) 250s [1] TRUE 250s > aeq(max(smat), max(tmat)) 250s [1] TRUE 250s > aeq(min(smat), min(tmat)) 250s [1] TRUE 250s > 250s > aeq(smat+1:13, tmat+1:13) 250s [1] TRUE 250s > aeq(smat+1:13, 1:13 +tmat ) 250s [1] TRUE 250s > aeq(smat+tmat, 2*smat) 250s [1] TRUE 250s > all.equal(tmat+tmat, 2*tmat) 250s [1] TRUE 250s > 250s > aeq(sort(unique(c(smat))), sort(unique(tmat))) 250s [1] TRUE 250s > 250s > # 250s > # check out the alternate input style, with full blocks 250s > # 250s > rmat <- bdsmatrix(c(3,2,2,4), 250s + c(22,1,2,1,21,3,2,3,20, 19,4,4,18, 17,5,5,16, 250s + 15,6,7,8,6,14,9,10,7,9,13,11,8,10,11,12), 250s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 250s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2), 250s + dimnames=list(NULL, letters[1:13])) 250s > all.equal(rmat, tmat) 250s [1] TRUE 250s > 250s > 250s > # Do some subscripting 250s > zz <- c(1,2,7,8,9,11) 250s > aeq(smat[zz,zz], as.matrix(tmat[zz,zz])) 250s [1] TRUE 250s > 250s > all.equal(smat[zz, 8:13], tmat[zz, 8:13]) # both are matrices 250s [1] TRUE 250s > 250s > # Diagonals 250s > aeq(diag(smat), diag(tmat)) 250s [1] TRUE 250s > zz <- diag(smat) 250s > diag(smat) <- zz*2 250s > diag(tmat) <- zz*2 250s > all.equal(smat, as.matrix(tmat)) 250s [1] TRUE 250s > 250s BEGIN TEST chtest.R 250s 250s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 250s Copyright (C) 2024 The R Foundation for Statistical Computing 250s Platform: aarch64-unknown-linux-gnu (64-bit) 250s 250s R is free software and comes with ABSOLUTELY NO WARRANTY. 250s You are welcome to redistribute it under certain conditions. 250s Type 'license()' or 'licence()' for distribution details. 250s 250s R is a collaborative project with many contributors. 250s Type 'contributors()' for more information and 250s 'citation()' on how to cite R or R packages in publications. 250s 250s Type 'demo()' for some demos, 'help()' for on-line help, or 250s 'help.start()' for an HTML browser interface to help. 250s Type 'q()' to quit R. 250s 250s > # 250s > # Test out the Cholesky 250s > # 250s > library(bdsmatrix) 250s 250s Attaching package: 'bdsmatrix' 250s 250s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 250s > 250s > tmat <- bdsmatrix(c(3,2,2,4), 250s The following object is masked from 'package:base': 250s 250s backsolve 250s 250s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 250s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 250s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 250s > dimnames(tmat) <- list(NULL, letters[1:13]) 251s > smat <- as.matrix(tmat) 251s > yy <- c(30,35,42,56,34,45,32,37,78,56,40,52,39) 251s > 251s > aeq(diag(tmat), diag(smat)) 251s [1] TRUE 251s > zz <- seq(1,13,2) 251s 251s Attaching package: 'bdsmatrix' 251s 251s > aeq(as.matrix(tmat[zz,zz]), smat[zz,zz]) 251s [1] TRUE 251s > 251s > ch0 <- chol(smat) 251s > ch1 <- gchol(smat) 251s > ch2 <- gchol(tmat) 251s > # The gchol routines use the composition LDL', where L is lower triangular 251s > # with a diagonal of 1's, and D is diagonal. chol() uses U'U where U is 251s > # upper trangular. 251s > # The as.matrix function returns L and the diag function returns D. 251s > # Convert and compare 251s > aeq(diag(ch1), diag(ch2)) 251s [1] TRUE 251s > temp <- as.matrix(ch2) 251s > aeq(temp, as.matrix(ch1)) 251s [1] TRUE 251s > temp3 <- temp %*% diag(sqrt(diag(ch2))) 251s > aeq(temp3, t(ch0)) 251s [1] TRUE 251s > 251s > zz0 <- solve(smat, yy) 251s > zz1 <- solve(ch1, yy) 251s > zz2 <- solve(tmat, yy) 251s > aeq(zz1, zz2) 251s [1] TRUE 251s > aeq(zz0, zz1) 251s [1] TRUE 251s > 251s > 251s BEGIN TEST chtest2.R 251s 251s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 251s Copyright (C) 2024 The R Foundation for Statistical Computing 251s Platform: aarch64-unknown-linux-gnu (64-bit) 251s 251s R is free software and comes with ABSOLUTELY NO WARRANTY. 251s You are welcome to redistribute it under certain conditions. 251s Type 'license()' or 'licence()' for distribution details. 251s 251s R is a collaborative project with many contributors. 251s Type 'contributors()' for more information and 251s 'citation()' on how to cite R or R packages in publications. 251s 251s Type 'demo()' for some demos, 'help()' for on-line help, or 251s 'help.start()' for an HTML browser interface to help. 251s Type 'q()' to quit R. 251s 251s > # 251s > # Inverse of the matrix: 251s > # 251s > library(bdsmatrix) 251s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 251s > 251s > tmat <- bdsmatrix(c(3,2,2,4), 251s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 251s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 251s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 251s > dimnames(tmat) <- list(NULL, letters[1:13]) 251s > 251s > smat <- as.matrix(tmat) 251s > 251s > inv1 <- solve(smat) 251s > inv2 <- as.matrix(solve(tmat)) # the result is a full, non-sparse matrix 251s > aeq(inv1, inv2) 251s [1] TRUE 251s > 251s > inv3 <- solve(gchol(tmat)) #sparse version, not all parts will be there 251s > inherits(inv3, 'bdsmatrix') #This should be true 251s [1] TRUE 251s > aeq(inv3@blocksize, tmat@blocksize) # Should be the same shape at tmat 251s [1] TRUE 251s > inv3 <- as.matrix(inv3) # What is returned should be correct 251s > aeq(inv1[1:3,1:3], inv3[1:3, 1:3]) 251s [1] TRUE 251s > aeq(inv1[4:5,4:5], inv3[4:5, 4:5]) 251s [1] TRUE 251s > aeq(inv1[6:7,6:7], inv3[6:7, 6:7]) 251s [1] TRUE 251s > aeq(inv1[8:11,8:11], inv3[8:11, 8:11]) 251s [1] TRUE 251s > aeq(inv1[,12:13], inv3[, 12:13]) # and rmat the same too 251s [1] TRUE 251s > 251s BEGIN TEST corner.R 251s The following object is masked from 'package:base': 251s 251s backsolve 251s 251s 251s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 251s Copyright (C) 2024 The R Foundation for Statistical Computing 251s Platform: aarch64-unknown-linux-gnu (64-bit) 251s 251s R is free software and comes with ABSOLUTELY NO WARRANTY. 251s You are welcome to redistribute it under certain conditions. 251s Type 'license()' or 'licence()' for distribution details. 251s 251s R is a collaborative project with many contributors. 251s Type 'contributors()' for more information and 251s 'citation()' on how to cite R or R packages in publications. 251s 251s Type 'demo()' for some demos, 'help()' for on-line help, or 251s 'help.start()' for an HTML browser interface to help. 251s Type 'q()' to quit R. 251s 251s > # 251s > # Test out the behavior of a 1x1 bds corner. 251s > # Actually, the problem that motivated this occurred whenever the 251s > # rmat portion was larger than the block diagonal portion. 251s > # 251s > library(bdsmatrix) 251s 251s Attaching package: 'bdsmatrix' 251s 251s The following object is masked from 'package:base': 251s 251s backsolve 251s 251s > test1 <- bdsmatrix(blocksize=1, blocks=33, 251s + rmat=matrix(c(17,33,7,-1, -7,7,48,-7, 251s + 1, -1, -7,4),4)) 251s > 251s > test2 <- bdsmatrix(blocksize=2, blocks=c(33,17,33), 251s + rmat=matrix(c( -7,7,48,-7, 1, -1, -7,4),4)) 251s > all.equal(as.matrix(test1), as.matrix(test2)) 251s [1] TRUE 251s > 251s > g1 <- gchol(test1) 251s > g2 <- gchol(test2) 251s > all.equal(as.matrix(g1), as.matrix(g2)) 251s [1] TRUE 251s > 251s > s1 <- solve(g1, full=T) 251s > s2 <- solve(g2, full=T) 251s > all.equal(as.matrix(s1), as.matrix(s2)) 251s [1] TRUE 251s > 251s > all.equal(solve(test1), solve(test2)) 251s [1] TRUE 251s > 251s BEGIN TEST corner2.R 251s 251s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 251s Copyright (C) 2024 The R Foundation for Statistical Computing 251s Platform: aarch64-unknown-linux-gnu (64-bit) 251s 251s R is free software and comes with ABSOLUTELY NO WARRANTY. 251s You are welcome to redistribute it under certain conditions. 251s Type 'license()' or 'licence()' for distribution details. 251s 251s R is a collaborative project with many contributors. 251s Type 'contributors()' for more information and 251s 'citation()' on how to cite R or R packages in publications. 251s 251s Type 'demo()' for some demos, 'help()' for on-line help, or 251s 'help.start()' for an HTML browser interface to help. 251s Type 'q()' to quit R. 251s 251s > # 251s > # Test out the Cholesky, special case of a null block corner 251s > # In this case there is no advantage to a bdsmatrix as it consists of only 251s > # the ordinary matrix part. This case arises in coxme with an (x1+x2 | 1) 251s > # term, however, so it is nice to have it work instead of coding lots of 251s > # if/else logic in that code base. 251s > # 251s > library(bdsmatrix) 251s 251s Attaching package: 'bdsmatrix' 251s 251s The following object is masked from 'package:base': 251s 251s backsolve 251s 251s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 251s > 251s > tmat <- bdsmatrix(c(3,2,2,4), 251s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 251s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 251s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 251s > dimnames(tmat) <- list(NULL, letters[1:13]) 251s > smat <- as.matrix(tmat) 251s > tmat <- bdsmatrix(integer(0), numeric(0), rmat=smat) 251s > yy <- c(30,35,42,56,34,45,32,37,78,56,40,52,39) 251s > 251s > aeq(diag(tmat), diag(smat)) 251s [1] TRUE 251s > zz <- seq(1,13,2) 251s > aeq(as.matrix(tmat[zz,zz]), smat[zz,zz]) 251s [1] TRUE 251s > 251s > ch0 <- chol(smat) 251s > ch1 <- gchol(smat) 251s > ch2 <- gchol(tmat) 251s > # The gchol routines use the composition LDL', where L is lower triangular 251s > # with a diagonal of 1's, and D is diagonal. chol() uses U'U where U is 251s > # upper trangular. 251s > # The as.matrix function returns L and the diag function returns D. 251s > # Convert and compare 251s > aeq(diag(ch1), diag(ch2)) 251s [1] TRUE 251s > temp <- as.matrix(ch2) 251s > aeq(temp, as.matrix(ch1)) 251s [1] TRUE 251s > temp3 <- temp %*% diag(sqrt(diag(ch2))) 251s > aeq(temp3, t(ch0)) 251s [1] TRUE 251s > 251s > zz0 <- solve(smat, yy) 251s > zz1 <- solve(ch1, yy) 251s > zz2 <- solve(tmat, yy) 251s > aeq(zz1, zz2) 251s [1] TRUE 251s > aeq(zz0, zz1) 251s [1] TRUE 251s > 251s > inv1 <- solve(smat) 251s > inv2 <- as.matrix(solve(tmat)) # the result is a full, non-sparse matrix 251s > aeq(inv1, inv2) 251s [1] TRUE 251s > 251s > inv3 <- solve(gchol(tmat)) 251s > aeq(inv1, as.matrix(inv3)) 251s [1] TRUE 251s > 251s > gmat <- gchol(tmat) 251s > g2 <- as.matrix(gmat) %*% diag(sqrt(diag(gmat))) 251s > aeq(1:13 %*% g2, 1:13 %*% gmat) #vectors first 251s [1] TRUE 251s > aeq(g2 %*% 1:13, gmat %*% 1:13) 251s [1] TRUE 251s > temp <- matrix(runif(39), nrow=3) 251s > aeq(temp %*% g2, temp %*% gmat) 251s [1] TRUE 251s > aeq(g2 %*% t(temp), gmat %*% t(temp)) 251s [1] TRUE 251s > 251s BEGIN TEST gtest.R 251s 251s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 251s Copyright (C) 2024 The R Foundation for Statistical Computing 251s Platform: aarch64-unknown-linux-gnu (64-bit) 251s 251s R is free software and comes with ABSOLUTELY NO WARRANTY. 251s You are welcome to redistribute it under certain conditions. 251s Type 'license()' or 'licence()' for distribution details. 251s 251s R is a collaborative project with many contributors. 251s Type 'contributors()' for more information and 251s 'citation()' on how to cite R or R packages in publications. 251s 251s Type 'demo()' for some demos, 'help()' for on-line help, or 251s 'help.start()' for an HTML browser interface to help. 251s Type 'q()' to quit R. 251s 252s > library(bdsmatrix) 252s 252s Attaching package: 'bdsmatrix' 252s 252s The following object is masked from 'package:base': 252s 252s backsolve 252s 252s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 252s > 252s > tmat <- bdsmatrix(c(3,2,2,4), 252s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 252s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 252s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 252s > dimnames(tmat) <- list(NULL, letters[1:13]) 252s > 252s > smat <- as.matrix(tmat) 252s > 252s > # Create a matrix that is symmetric, but not positive definite 252s > # The first one, temp, has column 6 redundant with cols 1-5 252s > temp <- smat[c(1:5, 5:10), c(1:5, 5:10)] 252s > ch1 <- gchol(temp) 252s > aeq(diag(ch1)[6], 0) # Check that it has a zero in the proper place 252s [1] TRUE 252s > ginv <- solve(ch1) # see if I get a generalized inverse 252s > aeq(temp %*% ginv %*% temp, temp) 252s [1] TRUE 252s > aeq(ginv %*% temp %*% ginv, ginv) 252s [1] TRUE 252s > 252s > # Now create one that is negative definite 252s > ch2 <- gchol(smat) 252s > temp2 <- as.matrix(ch2) 252s > temp3 <- diag(ch2) * rep(c(1, -1), length=nrow(smat)) 252s > xmat <- temp2 %*% diag(temp3) %*% t(temp2) 252s > xmat <- (xmat + t(xmat))/2 #work out round-off errors 252s > ch3 <- gchol(xmat) 252s > 252s > aeq(diag(ch3), temp3) 252s [1] TRUE 252s > aeq(as.matrix(ch3), temp2) 252s [1] TRUE 252s > 252s BEGIN TEST gtest2.R 252s 252s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 252s Copyright (C) 2024 The R Foundation for Statistical Computing 252s Platform: aarch64-unknown-linux-gnu (64-bit) 252s 252s R is free software and comes with ABSOLUTELY NO WARRANTY. 252s You are welcome to redistribute it under certain conditions. 252s Type 'license()' or 'licence()' for distribution details. 252s 252s R is a collaborative project with many contributors. 252s Type 'contributors()' for more information and 252s 'citation()' on how to cite R or R packages in publications. 252s 252s Type 'demo()' for some demos, 'help()' for on-line help, or 252s 'help.start()' for an HTML browser interface to help. 252s Type 'q()' to quit R. 252s 252s > library(bdsmatrix) 252s 252s Attaching package: 'bdsmatrix' 252s 252s The following object is masked from 'package:base': 252s 252s backsolve 252s 252s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 252s > 252s > # 252s > # Test multiplication of a vector/matrix times a gchol 252s > # 252s > tmat <- bdsmatrix(c(3,2,2,4), 252s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 252s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 252s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 252s > dimnames(tmat) <- list(NULL, letters[1:13]) 252s > 252s > gmat <- gchol(tmat) 252s > g2 <- as.matrix(gmat) %*% diag(sqrt(diag(gmat))) 252s > 252s > 252s > aeq(1:13 %*% g2, 1:13 %*% gmat) #vectors first 252s [1] TRUE 252s > aeq(g2 %*% 1:13, gmat %*% 1:13) 252s [1] TRUE 252s > 252s > temp <- matrix(runif(39), nrow=3) 252s > aeq(temp %*% g2, temp %*% gmat) 252s [1] TRUE 252s > aeq(g2 %*% t(temp), gmat %*% t(temp)) 252s [1] TRUE 252s > 252s BEGIN TEST matrix.R 252s 252s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 252s Copyright (C) 2024 The R Foundation for Statistical Computing 252s Platform: aarch64-unknown-linux-gnu (64-bit) 252s 252s R is free software and comes with ABSOLUTELY NO WARRANTY. 252s You are welcome to redistribute it under certain conditions. 252s Type 'license()' or 'licence()' for distribution details. 252s 252s R is a collaborative project with many contributors. 252s Type 'contributors()' for more information and 252s 'citation()' on how to cite R or R packages in publications. 252s 252s Type 'demo()' for some demos, 'help()' for on-line help, or 252s 'help.start()' for an HTML browser interface to help. 252s Type 'q()' to quit R. 252s 252s > library(bdsmatrix) 252s 252s Attaching package: 'bdsmatrix' 252s 252s The following object is masked from 'package:base': 252s 252s backsolve 252s 252s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 252s > 252s > tmat <- bdsmatrix(c(3,2,2,4), 252s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 252s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 252s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 252s > dimnames(tmat) <- list(NULL, letters[1:13]) 252s > 252s > smat <- as.matrix(tmat) 252s > yy <- c(30,35,42,56,34,45,32,37,78,56,40,52,39) 252s > 252s > # matrix multiplication 252s > zz <- runif(13) 252s > aeq(zz%*% smat, zz%*% tmat) 252s [1] TRUE 252s > aeq(smat%*%zz, tmat%*% zz) 252s [1] TRUE 252s > 252s > xx <- matrix(1:39, ncol=3) 252s > aeq(smat %*% zz, tmat %*% zz) 252s [1] TRUE 252s > aeq(t(xx) %*% smat, t(xx) %*% tmat) 252s [1] TRUE 252s > 252s > 252s > amat <- tmat 252s > amat@offdiag <- pi 252s > bmat <- as.matrix(amat) 252s > 252s > aeq(zz%*% amat, zz%*% bmat) 252s [1] TRUE 252s > aeq(amat%*%zz, bmat%*% zz) 252s [1] TRUE 252s > 252s > 252s > # Solve the right-hand side wrt a matrix 252s > yy2 <- cbind(yy, -yy, yy+3) 252s > zz1 <- solve(smat, yy2) 252s > zz2 <- solve(tmat, yy2) 252s > aeq(zz1, zz2) 252s [1] TRUE 252s > aeq(zz2[,1], solve(tmat, yy)) 252s [1] TRUE 252s > 253s BEGIN TEST nullr.R 253s 253s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 253s Copyright (C) 2024 The R Foundation for Statistical Computing 253s Platform: aarch64-unknown-linux-gnu (64-bit) 253s 253s R is free software and comes with ABSOLUTELY NO WARRANTY. 253s You are welcome to redistribute it under certain conditions. 253s Type 'license()' or 'licence()' for distribution details. 253s 253s R is a collaborative project with many contributors. 253s Type 'contributors()' for more information and 253s 'citation()' on how to cite R or R packages in publications. 253s 253s Type 'demo()' for some demos, 'help()' for on-line help, or 253s 'help.start()' for an HTML browser interface to help. 253s Type 'q()' to quit R. 253s 253s > # 253s > # Make sure things work in the simpler case of no rmat component 253s > # 253s > library(bdsmatrix) 253s 253s Attaching package: 'bdsmatrix' 253s 253s The following object is masked from 'package:base': 253s 253s backsolve 253s 253s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 253s > 253s > tmat <- bdsmatrix(blocksize= c(3,2,2,4), 253s + blocks= c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 253s + 8,14,9,10,13,11,12)) 253s > dimnames(tmat) <- list(NULL, letters[1:11]) 253s > smat <- as.matrix(tmat) 253s > yy <- c(30,35,42,56,34,45,32,37,78,56,40) 253s > 253s > aeq(diag(tmat), diag(smat)) 253s [1] TRUE 253s > zz <- seq(1,11,2) 253s > aeq(as.matrix(tmat[zz,zz]), smat[zz,zz]) 253s [1] TRUE 253s > 253s > ch0 <- chol(smat) 253s > ch1 <- gchol(smat) 253s > ch2 <- gchol(tmat) 253s > 253s > aeq(diag(ch1), diag(ch2)) 253s [1] TRUE 253s > temp <- as.matrix(ch2) 253s > aeq(temp, as.matrix(ch1)) 253s [1] TRUE 253s > temp3 <- temp %*% diag(sqrt(diag(ch2))) 253s > aeq(temp3, t(ch0)) 253s [1] TRUE 253s > 253s > zz0 <- solve(smat, yy) 253s > zz1 <- solve(ch1, yy) 253s > zz2 <- solve(tmat, yy) 253s > aeq(zz1, zz2) 253s [1] TRUE 253s > aeq(zz0, zz1) 253s [1] TRUE 253s > 253s BEGIN TEST reconcile.R 253s 253s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 253s Copyright (C) 2024 The R Foundation for Statistical Computing 253s Platform: aarch64-unknown-linux-gnu (64-bit) 253s 253s R is free software and comes with ABSOLUTELY NO WARRANTY. 253s You are welcome to redistribute it under certain conditions. 253s Type 'license()' or 'licence()' for distribution details. 253s 253s R is a collaborative project with many contributors. 253s Type 'contributors()' for more information and 253s 'citation()' on how to cite R or R packages in publications. 253s 253s Type 'demo()' for some demos, 'help()' for on-line help, or 253s 'help.start()' for an HTML browser interface to help. 253s Type 'q()' to quit R. 253s 253s > # 253s > # Test cases for bdsmatrix.reconcile 253s > # 253s > library(bdsmatrix) 253s 253s Attaching package: 'bdsmatrix' 253s 253s The following object is masked from 'package:base': 253s 253s backsolve 253s 253s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 253s > 253s > tmat <- bdsmatrix(c(3,2,2,4), 253s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 253s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 253s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 253s > id <- letters[1:13] 253s > dimnames(tmat) <- list(id, id) 253s > 253s > rmat <- matrix(1:169, 13,13) 253s > rmat <- (rmat + t(rmat))/2 253s > dimnames(rmat) <- list(rev(id), rev(id)) 253s > 253s > xmat <- bdsmatrix.reconcile(list(tmat, rmat), group=id) 253s > temp <- xmat[[1]] 253s > aeq(temp@blocksize, 13) 253s [1] TRUE 253s > aeq(as.matrix(temp), as.matrix(tmat)) 253s [1] TRUE 253s > 253s > temp <- xmat[[2]] 253s > aeq(temp@blocksize, 13) 253s [1] TRUE 253s > aeq(as.matrix(temp), rmat[13:1, 13:1]) 253s [1] TRUE 253s > 253s > xmat <- bdsmatrix.reconcile(list(rmat, bdsI, tmat), group= rev(id)) 253s > temp <- xmat[[1]] 253s > aeq(as.matrix(temp), rmat) 253s [1] TRUE 253s > 253s > temp <- xmat[[2]] 253s > aeq(as.matrix(temp), diag(13)) 253s [1] TRUE 253s > 253s > temp <- xmat[[3]] 253s > aeq(as.matrix(temp), (as.matrix(tmat))[13:1,13:1]) 253s [1] TRUE 253s > 253s > # 253s > # Simplest case 253s > # 253s > xmat <- bdsmatrix.reconcile(bdsI, id) 253s > all(xmat@blocksize==1) 253s [1] TRUE 253s > aeq(as.matrix(xmat), diag(13)) 253s [1] TRUE 253s > 253s > # 253s > # The case list(tmat, tmat) will fail - can't have 2 rmats 253s > # 253s > #xmat <- bdsmatrix.reconcile(list(tmat, tmat), id) 253s > 253s > xmat <- bdsmatrix.reconcile(list(tmat, bdsI), rev(id)) 253s > temp <- xmat[[1]] 253s > aeq(as.matrix(temp), as.matrix(tmat)) 253s [1] TRUE 253s > aeq(dimnames(temp)[[1]], id) 253s [1] TRUE 253s > 253s > aeq(as.matrix(xmat[[2]]), diag(13)) 253s [1] TRUE 253s > 253s > # 253s > # Now for the hard one: 2 bdsmatrices, different orders, different 253s > # blocksize, but one contains the other 253s > # 253s > tmat <- tmat[1:11, 1:11] 253s > tord <- c(11:8, 2,1,3, 6,7,5,4) 253s > rmat <- (as.matrix(tmat))[tord, tord] 253s > rmat <- bdsmatrix(blocksize=c(4,5,2), 253s + blocks=c(rmat[1:4,1:4], rmat[5:9,5:9], rmat[10:11, 10:11]), 253s + dimnames=list(id[tord], id[tord])) 253s > 253s > aeq(as.matrix(tmat)[tord,tord], as.matrix(rmat)) 253s [1] TRUE 253s > 253s > xmat <- bdsmatrix.reconcile(list(tmat/2, rmat), id[1:11]) 253s > all.equal(xmat[[2]], rmat) 253s [1] TRUE 253s > all.equal(xmat[[1]]*2, rmat) 253s [1] TRUE 253s > 253s > # Now toss out a row/col 253s > # Give it a different name, too 253s > xx <- id[tord] 253s > xx[1] <- 44 253s > dimnames(rmat) <- list(xx,xx) 253s > xmat <- bdsmatrix.reconcile(list(tmat/2, rmat), id[1:9]) 253s > all.equal(xmat[[1]]*2, xmat[[2]]) 253s [1] TRUE 253s > 253s BEGIN TEST tinv.R 253s 253s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 253s Copyright (C) 2024 The R Foundation for Statistical Computing 253s Platform: aarch64-unknown-linux-gnu (64-bit) 253s 253s R is free software and comes with ABSOLUTELY NO WARRANTY. 253s You are welcome to redistribute it under certain conditions. 253s Type 'license()' or 'licence()' for distribution details. 253s 253s R is a collaborative project with many contributors. 253s Type 'contributors()' for more information and 253s 'citation()' on how to cite R or R packages in publications. 253s 253s Type 'demo()' for some demos, 'help()' for on-line help, or 253s 'help.start()' for an HTML browser interface to help. 253s Type 'q()' to quit R. 253s 253s > library(bdsmatrix) 254s > aeq <- function(x,y) all.equal(as.vector(x), as.vector(y)) 254s > 254s > tmat <- bdsmatrix(c(3,2,2,4), 254s + c(22,1,2,21,3,20,19,4,18,17,5,16,15,6,7, 8,14,9,10,13,11,12), 254s + matrix(c(1,0,1,1,0,0,1,1,0,1,0,10,0, 254s + 0,1,1,0,1,1,0,1,1,0,1,0,10), ncol=2)) 254s > dimnames(tmat) <- list(NULL, letters[1:13]) 254s > 254s > smat <- as.matrix(tmat) 254s > yy <- c(30,35,42,56,34,45,32,37,78,56,40,52,39) 254s > # look at inverses more closely 254s > # (I needed this when some of the other tests weren't being passed, 254s > # to figure out where in the decomposition/inversion/multiply process 254s > # the flaw was). 254s > 254s > ch1 <- gchol(smat) 254s > ch2 <- gchol(tmat) 254s > 254s > inv1 <- solve(as.matrix(ch1)) 254s > inv2 <- solve(ch2,full=F) #inverse of the cholesky, not of tmat 254s > aeq(inv1, as.matrix(inv2)) 254s [1] TRUE 254s 254s Attaching package: 'bdsmatrix' 254s 254s The following object is masked from 'package:base': 254s 254s backsolve 254s 254s > 254s > # Full matrix tests 254s > inv3 <- solve(smat) 254s > inv4 <- solve(tmat) 254s > inv5 <- solve(gchol(smat), full=T) 254s > aeq(inv3, inv4) 254s [1] TRUE 254s > aeq(inv3, inv5) 254s [1] TRUE 254s > 254s > # The following test is false by design: when called with a bdsmatrix 254s > # object that has an rmat portion, the true inverse is dense. But 254s > # coxme only needs the trace for one calcluation; solve(gchol(tmat)) 254s > # cheats and only returns the block diagonal portion of the inverse. 254s > #inv6 <- solve(gchol(tmat), full=T) 254s > #aeq(inv3, inv6) 254s > 254s > # 254s > # Now test the solution to a partial solve 254s > # We want to be able to transform a matrix to uncorrelated form 254s > # If tmat= LDL', and A is general, I want (D^{-1/2}) L^{-1} A 254s > # 254s > amat <- matrix(runif(5*nrow(tmat)), nrow=nrow(tmat)) 254s > xx1 <- diag(1/sqrt(diag(ch1))) %*% solve(as.matrix(ch1), amat) 254s > xx2 <- solve(ch2, amat, full=F) 254s > aeq(xx1, xx2) 254s [1] TRUE 254s > 254s > xx1 <- diag(1/sqrt(diag(ch1))) %*% solve(as.matrix(ch1), yy) 254s > xx2 <- solve(ch2, yy, full=F) 254s > aeq(xx1, xx2) 254s [1] TRUE 254s > 254s autopkgtest [17:57:47]: test run-unit-test: -----------------------] 255s autopkgtest [17:57:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 255s run-unit-test PASS 255s autopkgtest [17:57:48]: test pkg-r-autopkgtest: preparing testbed 256s Reading package lists... 257s Building dependency tree... 257s Reading state information... 257s Starting pkgProblemResolver with broken count: 0 257s Starting 2 pkgProblemResolver with broken count: 0 257s Done 258s The following additional packages will be installed: 258s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 258s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 258s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 258s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 258s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 258s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 258s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 258s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 258s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 258s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 258s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 258s Suggested packages: 258s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 258s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 258s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 258s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 258s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 258s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 258s texlive-latex-recommended texlive-latex-extra texinfo 258s Recommended packages: 258s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 258s The following NEW packages will be installed: 258s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 258s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 258s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 258s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 258s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 258s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 258s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 258s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 258s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 258s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 258s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 258s pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 258s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. 258s Need to get 92.8 MB/92.8 MB of archives. 258s After this operation, 343 MB of additional disk space will be used. 258s Get:1 /tmp/autopkgtest.po6o00/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 258s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 258s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 258s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 258s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 258s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 258s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 258s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 259s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 259s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 259s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 259s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 259s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 259s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 259s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 259s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 259s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 259s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 259s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 259s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 260s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 260s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 260s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 260s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 261s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 261s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 261s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 261s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 261s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 262s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 262s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 262s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 262s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 262s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 262s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 262s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 262s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 262s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 262s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 262s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 262s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 262s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 262s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 263s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 263s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 263s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 263s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 263s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 263s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 263s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 263s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 263s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 263s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 263s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 263s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 263s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 263s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 263s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 263s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 263s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 263s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 264s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 264s Fetched 92.8 MB in 6s (16.0 MB/s) 264s Selecting previously unselected package libc-dev-bin. 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76840 files and directories currently installed.) 264s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 264s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 264s Selecting previously unselected package linux-libc-dev:arm64. 265s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 265s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 265s Selecting previously unselected package libcrypt-dev:arm64. 265s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 265s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 265s Selecting previously unselected package libtirpc-dev:arm64. 265s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 265s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 265s Selecting previously unselected package libnsl-dev:arm64. 265s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ... 265s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 265s Selecting previously unselected package rpcsvc-proto. 265s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 265s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 265s Selecting previously unselected package libc6-dev:arm64. 265s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ... 265s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 265s Selecting previously unselected package libisl23:arm64. 265s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ... 265s Unpacking libisl23:arm64 (0.26-3) ... 265s Selecting previously unselected package libmpc3:arm64. 265s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 265s Unpacking libmpc3:arm64 (1.3.1-1) ... 265s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 265s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 265s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 266s Selecting previously unselected package cpp-13. 266s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 266s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 266s Selecting previously unselected package cpp-aarch64-linux-gnu. 266s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 266s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 266s Selecting previously unselected package cpp. 266s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 266s Unpacking cpp (4:13.2.0-7ubuntu1) ... 266s Selecting previously unselected package libcc1-0:arm64. 266s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libitm1:arm64. 266s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libatomic1:arm64. 266s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libasan8:arm64. 266s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package liblsan0:arm64. 266s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libtsan2:arm64. 266s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libubsan1:arm64. 266s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libhwasan0:arm64. 266s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 266s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 266s Selecting previously unselected package libgcc-13-dev:arm64. 266s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 266s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 266s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 266s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 266s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 267s Selecting previously unselected package gcc-13. 267s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 267s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 267s Selecting previously unselected package gcc-aarch64-linux-gnu. 267s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 267s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package gcc. 267s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 267s Unpacking gcc (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package libstdc++-13-dev:arm64. 267s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 267s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 267s Selecting previously unselected package g++-13-aarch64-linux-gnu. 267s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 267s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 267s Selecting previously unselected package g++-13. 267s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 267s Unpacking g++-13 (13.2.0-17ubuntu2) ... 267s Selecting previously unselected package g++-aarch64-linux-gnu. 267s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 267s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package g++. 268s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 268s Unpacking g++ (4:13.2.0-7ubuntu1) ... 268s Selecting previously unselected package build-essential. 268s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 268s Unpacking build-essential (12.10ubuntu1) ... 268s Selecting previously unselected package dctrl-tools. 268s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 268s Unpacking dctrl-tools (2.24-3build2) ... 268s Selecting previously unselected package libgfortran-13-dev:arm64. 268s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 268s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 268s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 268s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 268s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 268s Selecting previously unselected package gfortran-13. 268s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 268s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 268s Selecting previously unselected package gfortran-aarch64-linux-gnu. 268s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 268s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 268s Selecting previously unselected package gfortran. 268s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 268s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 268s Selecting previously unselected package icu-devtools. 268s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 268s Unpacking icu-devtools (74.2-1ubuntu1) ... 268s Selecting previously unselected package libblas-dev:arm64. 268s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 268s Unpacking libblas-dev:arm64 (3.12.0-3) ... 268s Selecting previously unselected package libbz2-dev:arm64. 268s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 268s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 268s Selecting previously unselected package libicu-dev:arm64. 268s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 268s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 269s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 269s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 269s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 269s Selecting previously unselected package libjpeg8-dev:arm64. 269s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 269s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 269s Selecting previously unselected package libjpeg-dev:arm64. 269s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 269s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 269s Selecting previously unselected package liblapack-dev:arm64. 269s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 269s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 269s Selecting previously unselected package libncurses-dev:arm64. 269s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 269s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 269s Selecting previously unselected package libpcre2-16-0:arm64. 269s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 269s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 269s Selecting previously unselected package libpcre2-32-0:arm64. 269s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 269s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 269s Selecting previously unselected package libpcre2-posix3:arm64. 269s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 269s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 269s Selecting previously unselected package libpcre2-dev:arm64. 269s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 269s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 269s Selecting previously unselected package libpkgconf3:arm64. 269s Preparing to unpack .../51-libpkgconf3_1.8.1-2_arm64.deb ... 269s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 269s Selecting previously unselected package zlib1g-dev:arm64. 269s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 269s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 269s Selecting previously unselected package libpng-dev:arm64. 269s Preparing to unpack .../53-libpng-dev_1.6.43-3_arm64.deb ... 269s Unpacking libpng-dev:arm64 (1.6.43-3) ... 269s Selecting previously unselected package libreadline-dev:arm64. 269s Preparing to unpack .../54-libreadline-dev_8.2-3.1_arm64.deb ... 269s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 269s Selecting previously unselected package pkgconf-bin. 269s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_arm64.deb ... 269s Unpacking pkgconf-bin (1.8.1-2) ... 269s Selecting previously unselected package pkgconf:arm64. 269s Preparing to unpack .../56-pkgconf_1.8.1-2_arm64.deb ... 269s Unpacking pkgconf:arm64 (1.8.1-2) ... 269s Selecting previously unselected package pkg-config:arm64. 269s Preparing to unpack .../57-pkg-config_1.8.1-2_arm64.deb ... 269s Unpacking pkg-config:arm64 (1.8.1-2) ... 269s Selecting previously unselected package liblzma-dev:arm64. 269s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_arm64.deb ... 269s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 269s Selecting previously unselected package r-base-dev. 269s Preparing to unpack .../59-r-base-dev_4.3.3-2build1_all.deb ... 269s Unpacking r-base-dev (4.3.3-2build1) ... 269s Selecting previously unselected package pkg-r-autopkgtest. 269s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 269s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 269s Selecting previously unselected package autopkgtest-satdep. 269s Preparing to unpack .../61-2-autopkgtest-satdep.deb ... 269s Unpacking autopkgtest-satdep (0) ... 269s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 269s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 269s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 269s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 269s Setting up libpkgconf3:arm64 (1.8.1-2) ... 269s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 269s Setting up libmpc3:arm64 (1.3.1-1) ... 269s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 269s Setting up icu-devtools (74.2-1ubuntu1) ... 269s Setting up pkgconf-bin (1.8.1-2) ... 269s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 269s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 269s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 270s Setting up libnsl-dev:arm64 (1.3.0-3) ... 270s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 270s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 270s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 270s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 270s Setting up libisl23:arm64 (0.26-3) ... 270s Setting up libc-dev-bin (2.39-0ubuntu2) ... 270s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 270s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 270s Setting up libblas-dev:arm64 (3.12.0-3) ... 270s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 270s Setting up dctrl-tools (2.24-3build2) ... 270s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 270s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 270s Setting up pkgconf:arm64 (1.8.1-2) ... 270s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 270s Setting up liblapack-dev:arm64 (3.12.0-3) ... 270s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 270s Setting up pkg-config:arm64 (1.8.1-2) ... 270s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 270s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 270s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 270s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 270s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 270s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 270s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 270s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 270s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 270s Setting up cpp-13 (13.2.0-17ubuntu2) ... 270s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 270s Setting up libreadline-dev:arm64 (8.2-3.1) ... 270s Setting up gcc-13 (13.2.0-17ubuntu2) ... 270s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 270s Setting up cpp (4:13.2.0-7ubuntu1) ... 270s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 270s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 270s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 270s Setting up g++-13 (13.2.0-17ubuntu2) ... 270s Setting up libpng-dev:arm64 (1.6.43-3) ... 270s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 270s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 270s Setting up gcc (4:13.2.0-7ubuntu1) ... 270s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 270s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 270s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 270s Setting up gfortran (4:13.2.0-7ubuntu1) ... 270s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 270s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 270s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 270s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 270s Setting up g++ (4:13.2.0-7ubuntu1) ... 270s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 270s Setting up build-essential (12.10ubuntu1) ... 270s Setting up r-base-dev (4.3.3-2build1) ... 270s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 270s Setting up autopkgtest-satdep (0) ... 270s Processing triggers for man-db (2.12.0-3) ... 270s Processing triggers for install-info (7.1-3) ... 271s Processing triggers for libc-bin (2.39-0ubuntu2) ... 274s (Reading database ... 80399 files and directories currently installed.) 274s Removing autopkgtest-satdep (0) ... 275s autopkgtest [17:58:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 275s autopkgtest [17:58:08]: test pkg-r-autopkgtest: [----------------------- 276s Test: Try to load the R library bdsmatrix 279s 279s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 279s Copyright (C) 2024 The R Foundation for Statistical Computing 279s Platform: aarch64-unknown-linux-gnu (64-bit) 279s 279s R is free software and comes with ABSOLUTELY NO WARRANTY. 279s You are welcome to redistribute it under certain conditions. 279s Type 'license()' or 'licence()' for distribution details. 279s 279s R is a collaborative project with many contributors. 279s Type 'contributors()' for more information and 279s 'citation()' on how to cite R or R packages in publications. 279s 279s Type 'demo()' for some demos, 'help()' for on-line help, or 279s 'help.start()' for an HTML browser interface to help. 279s Type 'q()' to quit R. 279s 279s > library('bdsmatrix') 280s 280s Attaching package: ‘bdsmatrix’ 280s 280s > 280s > 280s The following object is masked from ‘package:base’: 280s 280s backsolve 280s 280s Other tests are currently unsupported! 280s They will be progressively added. 281s autopkgtest [17:58:14]: test pkg-r-autopkgtest: -----------------------] 281s pkg-r-autopkgtest PASS 281s autopkgtest [17:58:14]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 282s autopkgtest [17:58:15]: @@@@@@@@@@@@@@@@@@@@ summary 282s run-unit-test PASS 282s pkg-r-autopkgtest PASS 306s Creating nova instance adt-noble-arm64-r-cran-bdsmatrix-20240316-175333-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...