0s autopkgtest [17:48:56]: starting date and time: 2024-03-16 17:48:56+0000 0s autopkgtest [17:48:56]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:48:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rgrj1r_c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-adegraphics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-11.secgroup --name adt-noble-arm64-r-cran-adegraphics-20240316-174856-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 141s autopkgtest [17:51:17]: testbed dpkg architecture: arm64 141s autopkgtest [17:51:17]: testbed apt version: 2.7.12 141s autopkgtest [17:51:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 142s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 142s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 142s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 142s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 142s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 142s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 142s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 142s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 143s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 143s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 143s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 146s Fetched 9060 kB in 2s (4835 kB/s) 146s Reading package lists... 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Calculating upgrade... 151s The following packages will be REMOVED: 151s libglib2.0-0 libssl3 151s The following NEW packages will be installed: 151s libglib2.0-0t64 libssl3t64 xdg-user-dirs 151s The following packages have been kept back: 151s curl 151s The following packages will be upgraded: 151s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 151s ubuntu-minimal ubuntu-standard 151s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 151s Need to get 4613 kB of archives. 151s After this operation, 211 kB of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 152s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 152s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 152s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 152s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 152s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 152s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 152s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 152s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 153s Fetched 4613 kB in 1s (5973 kB/s) 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 153s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 153s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 154s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 154s udisks2 depends on libglib2.0-0 (>= 2.77.0). 154s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 154s python3-gi depends on libglib2.0-0 (>= 2.77.0). 154s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 154s netplan.io depends on libglib2.0-0 (>= 2.70.0). 154s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 154s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 154s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 154s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 154s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 154s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 154s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 154s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 154s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 154s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 154s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 154s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 154s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 154s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 154s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 154s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 154s fwupd depends on libglib2.0-0 (>= 2.79.0). 154s bolt depends on libglib2.0-0 (>= 2.56.0). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 154s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 154s Selecting previously unselected package libglib2.0-0t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 154s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 154s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 154s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 154s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 154s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 154s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 155s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 155s wget depends on libssl3 (>= 3.0.0). 155s u-boot-tools depends on libssl3 (>= 3.0.0). 155s tnftp depends on libssl3 (>= 3.0.0). 155s tcpdump depends on libssl3 (>= 3.0.0). 155s systemd-resolved depends on libssl3 (>= 3.0.0). 155s systemd depends on libssl3 (>= 3.0.0). 155s sudo depends on libssl3 (>= 3.0.0). 155s sbsigntool depends on libssl3 (>= 3.0.0). 155s rsync depends on libssl3 (>= 3.0.0). 155s python3-cryptography depends on libssl3 (>= 3.0.0). 155s openssh-server depends on libssl3 (>= 3.0.10). 155s openssh-client depends on libssl3 (>= 3.0.10). 155s mtd-utils depends on libssl3 (>= 3.0.0). 155s mokutil depends on libssl3 (>= 3.0.0). 155s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 155s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 155s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 155s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 155s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 155s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 155s libnvme1 depends on libssl3 (>= 3.0.0). 155s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 155s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 155s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 155s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 155s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 155s kmod depends on libssl3 (>= 3.0.0). 155s dhcpcd-base depends on libssl3 (>= 3.0.0). 155s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 155s 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 155s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 155s Selecting previously unselected package libssl3t64:arm64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 155s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 155s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 155s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 155s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 155s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 155s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 155s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 155s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 155s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 155s Unpacking ubuntu-minimal (1.536) over (1.535) ... 155s Selecting previously unselected package xdg-user-dirs. 155s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 155s Unpacking xdg-user-dirs (0.18-1) ... 155s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 155s Unpacking ubuntu-standard (1.536) over (1.535) ... 155s Setting up ubuntu-minimal (1.536) ... 155s Setting up xdg-user-dirs (0.18-1) ... 155s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 155s Setting up libtirpc-common (1.3.4+ds-1.1) ... 155s Setting up ubuntu-standard (1.536) ... 155s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 155s No schema files found: doing nothing. 155s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 155s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 155s Setting up openssl (3.0.13-0ubuntu1) ... 155s Setting up readline-common (8.2-3.1) ... 155s Processing triggers for man-db (2.12.0-3) ... 156s Processing triggers for install-info (7.1-3) ... 157s Processing triggers for libc-bin (2.39-0ubuntu2) ... 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 159s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 159s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 159s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 159s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 161s Reading package lists... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 162s Calculating upgrade... 162s The following packages have been kept back: 162s curl 162s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 166s autopkgtest [17:51:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 166s autopkgtest [17:51:42]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegraphics 168s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegraphics 1.0-21-1 (dsc) [2334 B] 168s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegraphics 1.0-21-1 (tar) [2868 kB] 168s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegraphics 1.0-21-1 (diff) [3404 B] 169s gpgv: Signature made Tue Oct 17 06:34:49 2023 UTC 169s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 169s gpgv: issuer "tille@debian.org" 169s gpgv: Can't check signature: No public key 169s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegraphics_1.0-21-1.dsc: no acceptable signature found 169s autopkgtest [17:51:45]: testing package r-cran-adegraphics version 1.0-21-1 169s autopkgtest [17:51:45]: build not needed 171s autopkgtest [17:51:47]: test run-unit-test: preparing testbed 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 173s Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 174s The following additional packages will be installed: 174s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 174s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 174s gdal-plugins javascript-common libaec0 libarmadillo12 libarpack2 libblas3 174s libblosc1 libcairo2 libcfitsio10 libcurl4t64 libdatrie1 libdav1d7 libde265-0 174s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgdal34 libgeos-c1v5 174s libgeos3.12.1 libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 174s libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 174s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libjbig0 174s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 174s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 174s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 174s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 174s libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1 libkmldom1 174s libkmlengine1 liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0 174s libminizip1 libmysqlclient21 libnetcdf19 libnlopt0 libodbc2 libodbcinst2 174s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 174s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpoppler134 libpq5 174s libproj25 libpsl5t64 libqhull-r8.0 libreadline8t64 librttopo1 libsharpyuv0 174s libsm6 libsnappy1v5 libspatialite8 libsuperlu6 libsz2 libtcl8.6 libthai-data 174s libthai0 libtiff6 libtirpc3t64 libtk8.6 libudunits2-0 libudunits2-data 174s liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2 libxft2 174s libxrender1 libxss1 libxt6t64 littler mysql-common node-bootstrap-sass 174s node-html5shiv node-normalize.css pandoc pandoc-data proj-data r-base-core 174s r-cran-abind r-cran-ade4 r-cran-adegraphics r-cran-backports 174s r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-boot r-cran-brio 174s r-cran-broom r-cran-bslib r-cran-cachem r-cran-callr r-cran-car 174s r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class r-cran-classint 174s r-cran-cli r-cran-clipr r-cran-clock r-cran-codetools r-cran-colorspace 174s r-cran-commonmark r-cran-conquer r-cran-cpp11 r-cran-crayon r-cran-curl 174s r-cran-data.table r-cran-dbi r-cran-deldir r-cran-desc r-cran-diagram 174s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-ellipsis 174s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome 174s r-cran-forcats r-cran-foreach r-cran-foreign r-cran-fs r-cran-future 174s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 174s r-cran-glue r-cran-gower r-cran-gtable r-cran-hardhat r-cran-haven 174s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-interp 174s r-cran-ipred r-cran-isoband r-cran-iterators r-cran-jpeg r-cran-jquerylib 174s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 174s r-cran-lattice r-cran-latticeextra r-cran-lava r-cran-lifecycle 174s r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lubridate r-cran-magrittr 174s r-cran-maptools r-cran-markdown r-cran-mass r-cran-matrix 174s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv 174s r-cran-mime r-cran-minqa r-cran-modelmetrics r-cran-munsell r-cran-nlme 174s r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openxlsx r-cran-parallelly 174s r-cran-pbkrtest r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 174s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise 174s r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim 174s r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps 174s r-cran-purrr r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 174s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 174s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-readr r-cran-readxl 174s r-cran-recipes r-cran-rematch r-cran-rematch2 r-cran-reshape2 r-cran-rio 174s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-s2 174s r-cran-sass r-cran-scales r-cran-sf r-cran-shape r-cran-shiny 174s r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-spdata r-cran-spdep 174s r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival 174s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 174s r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-units 174s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo 174s r-cran-withr r-cran-wk r-cran-writexl r-cran-xfun r-cran-xtable r-cran-yaml 174s r-cran-zip unixodbc-common unzip x11-common xdg-utils zip 174s Suggested packages: 174s apache2 | lighttpd | httpd geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc 174s libhdf4-alt-dev hdf4-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec 174s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 174s libheif-plugin-rav1e libheif-plugin-svtenc libjs-jquery-ui-docs 174s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils 174s odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 nodejs 174s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 174s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 174s ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info 174s | r-doc-pdf r-mathlib r-base-html r-cran-adephylo r-cran-ape r-cran-waveslim 174s r-cran-doparallel r-cran-roxygen2 r-cran-ff r-cran-aer r-cran-bbmle 174s r-cran-cluster r-cran-cmprsk r-cran-coda r-cran-covr r-cran-emmeans 174s r-cran-epir r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm 174s r-cran-hmisc r-cran-irlba r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lmtest 174s r-cran-lsmeans r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata 174s r-cran-multcomp r-cran-network r-cran-ordinal r-cran-plm r-cran-psych 174s r-cran-robust r-cran-robustbase r-cran-rsample r-cran-sandwich 174s r-cran-spatialreg r-cran-spelling r-cran-survey r-cran-systemfit 174s r-cran-tseries r-cran-zoo r-cran-bradleyterry2 r-cran-ellipse r-cran-mlbench 174s r-cran-party r-cran-pls r-cran-randomforest r-cran-rann r-cran-rstudioapi 174s r-cran-slider r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 174s r-cran-viridis r-cran-rmysql r-cran-polyclip r-cran-tinytest 174s r-cran-gridextra r-cran-scatterplot3d r-cran-th.data r-cran-magick 174s r-cran-getopt r-cran-rgeos r-cran-spatstat.geom r-cran-raster r-cran-plotrix 174s r-cran-spatstat.linnet r-cran-spatstat.utils r-cran-spatstat r-cran-httr 174s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-vdiffr 174s r-cran-inline r-cran-bench r-cran-blob r-cran-here r-cran-runit 174s Recommended packages: 174s proj-bin libheif-plugin-aomenc libheif-plugin-x265 node-jquery poppler-data 174s r-recommended r-base-dev r-doc-html r-cran-covr r-cran-thematic 174s r-cran-cliapp r-cran-mockery r-cran-earth r-cran-mda r-cran-mlmetrics 174s r-cran-fastica r-cran-kernlab r-cran-themis r-cran-tinytest 174s r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-bench 174s r-cran-decor r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-xts 174s r-cran-nanotime r-cran-zoo r-cran-gh r-cran-dbplyr r-cran-rmysql 174s r-cran-rpostgresql r-cran-rsqlite r-cran-unitizer r-cran-rsvg 174s r-cran-rhpcblasctl r-cran-r.rsp r-cran-hexbin r-cran-hmisc r-cran-mapproj 174s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-ragg r-cran-svglite 174s r-cran-vdiffr r-cran-devtools r-cran-modeldata r-cran-roxygen2 174s r-cran-usethis r-cran-testit r-cran-cairo r-cran-mlbench r-cran-httr 174s r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 174s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-ellipse 174s r-cran-fields r-cran-geepack r-bioc-graph r-cran-bookdown r-cran-igraph 174s r-cran-lavasearch2 r-cran-mets r-cran-optimx r-cran-polycor r-cran-lintr 174s r-cran-tidyverse r-cran-rcurl r-cran-r.devices r-cran-bitops r-cran-mathjaxr 174s r-cran-mockr r-cran-remotes r-cran-doparallel r-cran-itertools 174s r-cran-logcondens r-cran-webfakes r-cran-pbmcapply r-cran-furrr r-cran-cba 174s r-cran-pingr r-cran-ddalpha r-cran-dials r-cran-rann r-cran-rcpproll 174s r-cran-rsample r-cran-rspectra r-cran-splines2 r-cran-dygraphs 174s r-cran-rsconnect r-cran-downlit r-cran-dichromat r-cran-blob r-cran-lwgeom 174s r-cran-pbapply r-cran-raster r-cran-spatstat r-cran-spatstat.geom 174s r-cran-spatstat.random r-cran-spatstat.linnet r-cran-spatstat.utils 174s r-cran-stars r-cran-terra r-cran-gstat r-cran-spatialreg r-cran-dbscan 174s r-cran-spam r-cran-setrng r-cran-formattable r-cran-pkgdown r-cran-zeallot 174s r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl 174s libx11-protocol-perl x11-utils x11-xserver-utils 174s The following packages will be REMOVED: 174s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 174s The following NEW packages will be installed: 174s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 174s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 174s fonts-mathjax gdal-data gdal-plugins javascript-common libaec0 174s libarmadillo12 libarpack2 libblas3 libblosc1 libcairo2 libcfitsio10 174s libcurl4t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 174s libfreexl1 libfyba0 libgdal34 libgeos-c1v5 libgeos3.12.1 libgeotiff5 174s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 174s libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 174s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 174s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 174s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 174s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 174s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 174s libkmlbase1 libkmldom1 libkmlengine1 liblapack3 liblcms2-2 liblerc4 libltdl7 174s liblua5.4-0 libminizip1 libmysqlclient21 libnetcdf19 libnlopt0 libodbc2 174s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 174s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 174s libpoppler134 libpq5 libproj25 libpsl5t64 libqhull-r8.0 libreadline8t64 174s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8 libsuperlu6 174s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc3t64 libtk8.6 174s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 174s libxcb-shm0 libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6t64 littler 174s mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc 174s pandoc-data proj-data r-base-core r-cran-abind r-cran-ade4 174s r-cran-adegraphics r-cran-backports r-cran-base64enc r-cran-bit r-cran-bit64 174s r-cran-boot r-cran-brio r-cran-broom r-cran-bslib r-cran-cachem r-cran-callr 174s r-cran-car r-cran-cardata r-cran-caret r-cran-cellranger r-cran-class 174s r-cran-classint r-cran-cli r-cran-clipr r-cran-clock r-cran-codetools 174s r-cran-colorspace r-cran-commonmark r-cran-conquer r-cran-cpp11 174s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-deldir 174s r-cran-desc r-cran-diagram r-cran-diffobj r-cran-digest r-cran-dplyr 174s r-cran-e1071 r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 174s r-cran-fastmap r-cran-fontawesome r-cran-forcats r-cran-foreach 174s r-cran-foreign r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 174s r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gower r-cran-gtable 174s r-cran-hardhat r-cran-haven r-cran-highr r-cran-hms r-cran-htmltools 174s r-cran-httpuv r-cran-interp r-cran-ipred r-cran-isoband r-cran-iterators 174s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr 174s r-cran-labeling r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lava 174s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lme4 r-cran-lubridate 174s r-cran-magrittr r-cran-maptools r-cran-markdown r-cran-mass r-cran-matrix 174s r-cran-matrixmodels r-cran-matrixstats r-cran-memoise r-cran-mgcv 174s r-cran-mime r-cran-minqa r-cran-modelmetrics r-cran-munsell r-cran-nlme 174s r-cran-nloptr r-cran-nnet r-cran-numderiv r-cran-openxlsx r-cran-parallelly 174s r-cran-pbkrtest r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 174s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-png r-cran-praise 174s r-cran-prettyunits r-cran-proc r-cran-processx r-cran-prodlim 174s r-cran-progress r-cran-progressr r-cran-promises r-cran-proxy r-cran-ps 174s r-cran-purrr r-cran-quantreg r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 174s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 174s r-cran-rcpparmadillo r-cran-rcppeigen r-cran-readr r-cran-readxl 174s r-cran-recipes r-cran-rematch r-cran-rematch2 r-cran-reshape2 r-cran-rio 174s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-s2 174s r-cran-sass r-cran-scales r-cran-sf r-cran-shape r-cran-shiny 174s r-cran-sourcetools r-cran-sp r-cran-sparsem r-cran-spdata r-cran-spdep 174s r-cran-squarem r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival 174s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 174s r-cran-timechange r-cran-timedate r-cran-tinytex r-cran-tzdb r-cran-units 174s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo 174s r-cran-withr r-cran-wk r-cran-writexl r-cran-xfun r-cran-xtable r-cran-yaml 174s r-cran-zip unixodbc-common unzip x11-common xdg-utils zip 174s The following packages will be upgraded: 174s curl 174s 1 upgraded, 307 newly installed, 5 to remove and 0 not upgraded. 174s Need to get 250 MB/250 MB of archives. 174s After this operation, 715 MB of additional disk space will be used. 174s Get:1 /tmp/autopkgtest.roglPs/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 175s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 175s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 175s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 175s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 175s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 175s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 175s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 175s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 175s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 175s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 175s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 175s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 175s Get:16 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-data all 3.8.4+dfsg-1 [261 kB] 175s Get:17 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-plugins arm64 3.8.4+dfsg-1 [24.5 kB] 175s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 175s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 175s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 175s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 175s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 175s Get:23 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 175s Get:24 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 175s Get:25 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 175s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 175s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 175s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 175s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 175s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 175s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 175s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 175s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libcfitsio10 arm64 4.3.1-1 [519 kB] 175s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 175s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 175s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 175s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 175s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 175s Get:39 http://ftpmaster.internal/ubuntu noble/universe arm64 libminizip1 arm64 1:1.3.dfsg-3ubuntu1 [22.3 kB] 176s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 176s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos3.12.1 arm64 3.12.1-1 [825 kB] 176s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos-c1v5 arm64 3.12.1-1 [88.8 kB] 176s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 176s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 176s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 176s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 176s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 176s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 176s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 176s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 176s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 176s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 176s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 176s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 176s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 176s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 176s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 176s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 176s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 176s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 176s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlbase1 arm64 1.3.0-10 [45.7 kB] 176s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmldom1 arm64 1.3.0-10 [140 kB] 176s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlengine1 arm64 1.3.0-10 [64.9 kB] 176s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 176s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 176s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 176s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 176s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 176s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 176s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 176s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 176s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 176s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 176s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 176s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 176s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 176s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 176s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 176s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libspatialite8 arm64 5.1.0-1 [1938 kB] 176s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces-c3.2 arm64 3.2.4+debian-1.1 [1065 kB] 176s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libgdal34 arm64 3.8.4+dfsg-1 [7887 kB] 176s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 176s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 176s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 176s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 176s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 176s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 176s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 176s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 176s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 176s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 176s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 176s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 177s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 177s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 177s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 177s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 177s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 177s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 177s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 177s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 177s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 177s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 177s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 177s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 177s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 177s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 177s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 177s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 177s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 177s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 177s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 177s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 177s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 177s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 177s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 177s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 177s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 177s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 177s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 178s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 178s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 178s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 178s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 178s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 178s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 178s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 179s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 179s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 179s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pixmap all 0.4-12-1 [201 kB] 179s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 179s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 179s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 179s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 179s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 179s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ade4 arm64 1.7-22-1 [5324 kB] 180s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 180s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 180s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 180s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 180s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 180s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 180s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 180s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 180s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 180s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-adegraphics all 1.0-21-1 [3262 kB] 180s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 180s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 180s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 180s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 180s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB] 180s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 180s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 180s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 180s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 180s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 180s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 180s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 180s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 180s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 180s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 180s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 180s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 180s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 180s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 180s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 180s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 180s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 180s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 180s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 180s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 180s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 180s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 180s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 180s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 180s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 180s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 180s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 180s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 180s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 180s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 180s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 180s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 181s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 181s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 181s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 181s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 181s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 181s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 181s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 181s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cardata all 3.0.5-1 [1819 kB] 181s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 181s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 181s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 181s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-minqa arm64 1.2.6-1 [107 kB] 181s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 libnlopt0 arm64 2.7.1-5build2 [174 kB] 181s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 181s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 181s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 181s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 181s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 181s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 181s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 181s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 182s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 182s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 182s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 182s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nloptr arm64 2.0.3-1 [375 kB] 182s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 182s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lme4 arm64 1.1-35.1-4 [4116 kB] 182s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-numderiv all 2016.8-1.1-3 [115 kB] 182s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 182s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 182s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 182s Get:215 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 182s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 182s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbkrtest all 0.5.2-2 [182 kB] 182s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sparsem arm64 1.81-1 [902 kB] 182s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixmodels all 0.5-3-1 [361 kB] 182s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 182s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 182s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 182s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 182s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 182s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 182s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 182s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 182s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 182s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 182s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 182s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 182s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 182s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 182s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 182s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 182s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 182s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 183s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modelmetrics arm64 1.2.2.2-1build1 [121 kB] 183s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 183s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proc arm64 1.18.5-1 [963 kB] 183s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 183s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clock arm64 0.7.0-1.1 [1736 kB] 183s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gower arm64 1.0.1-1 [206 kB] 183s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hardhat all 1.3.1+dfsg-1 [554 kB] 183s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 183s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shape all 1.4.6-1 [770 kB] 183s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diagram all 1.6.5-2 [656 kB] 183s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 183s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 183s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 183s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 183s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 183s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progressr all 0.14.0-1 [338 kB] 183s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-squarem all 2021.1-1 [179 kB] 183s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lava all 1.7.3+dfsg-1 [2166 kB] 183s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prodlim arm64 2023.08.28-1 [407 kB] 183s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ipred arm64 0.9-14-1 [383 kB] 183s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timechange arm64 0.3.0-1 [172 kB] 183s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lubridate arm64 1.9.3+dfsg-1 [1010 kB] 183s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timedate arm64 4032.109-1 [1229 kB] 183s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-recipes all 1.0.9+dfsg-1 [1964 kB] 183s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 183s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-caret arm64 6.0-94+dfsg-1 [3434 kB] 183s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-conquer arm64 1.3.3-1 [440 kB] 183s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-quantreg arm64 5.97-1 [1527 kB] 183s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 183s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maptools arm64 1:1.1-8+dfsg-1 [1365 kB] 183s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 183s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 183s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 183s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 183s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 183s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 183s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 183s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 183s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 183s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch all 2.0.0-1 [18.3 kB] 183s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cellranger all 1.1.0-3 [102 kB] 183s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readxl arm64 1.4.3-1 [726 kB] 183s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-writexl arm64 1.5.0-1 [157 kB] 183s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 183s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 183s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 183s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zip arm64 2.3.1-1 [125 kB] 183s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openxlsx arm64 4.2.5.2-1 [1925 kB] 183s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rio all 1.0.1-1 [529 kB] 183s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-car all 3.1-2-2 [1692 kB] 183s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 183s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 183s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 183s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 183s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 183s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 183s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 183s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 183s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 183s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 183s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 183s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 183s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 184s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 184s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 184s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 184s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 184s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 184s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1 [2989 kB] 184s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spdata all 2.3.0-1 [3734 kB] 184s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spdep arm64 1.3-1+dfsg-1 [2134 kB] 187s Preconfiguring packages ... 187s Fetched 250 MB in 10s (24.5 MB/s) 187s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 187s wget depends on libpsl5 (>= 0.16.0). 187s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 187s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 187s 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 187s Removing libpsl5:arm64 (0.21.2-1build1) ... 187s Selecting previously unselected package libpsl5t64:arm64. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 187s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 187s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 187s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 187s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 187s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 187s Selecting previously unselected package libcurl4t64:arm64. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 187s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 187s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 187s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 187s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 187s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 187s 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 187s Removing libpng16-16:arm64 (1.6.43-1) ... 187s Selecting previously unselected package libpng16-16t64:arm64. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 187s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 187s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 188s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 188s parted depends on libreadline8 (>= 6.0). 188s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 188s gpgsm depends on libreadline8 (>= 6.0). 188s gpgconf depends on libreadline8 (>= 6.0). 188s gpg depends on libreadline8 (>= 6.0). 188s gawk depends on libreadline8 (>= 6.0). 188s fdisk depends on libreadline8 (>= 6.0). 188s 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 188s Removing libreadline8:arm64 (8.2-3) ... 188s Selecting previously unselected package libreadline8t64:arm64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 188s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 188s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 188s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 188s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 188s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 188s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 188s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 188s lsof depends on libtirpc3 (>= 1.0.2). 188s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 188s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 188s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 188s iproute2 depends on libtirpc3 (>= 1.0.2). 188s 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 188s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 188s Selecting previously unselected package libtirpc3t64:arm64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 188s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 188s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 188s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 188s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 188s Selecting previously unselected package fonts-dejavu-mono. 188s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 188s Unpacking fonts-dejavu-mono (2.37-8) ... 188s Selecting previously unselected package fonts-dejavu-core. 188s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 188s Unpacking fonts-dejavu-core (2.37-8) ... 188s Selecting previously unselected package fontconfig-config. 188s Preparing to unpack .../003-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 188s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 188s Selecting previously unselected package libfontconfig1:arm64. 188s Preparing to unpack .../004-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 188s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 189s Selecting previously unselected package fontconfig. 189s Preparing to unpack .../005-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 189s Unpacking fontconfig (2.15.0-1ubuntu1) ... 189s Selecting previously unselected package fonts-font-awesome. 189s Preparing to unpack .../006-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 189s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 189s Selecting previously unselected package fonts-glyphicons-halflings. 189s Preparing to unpack .../007-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 189s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 189s Selecting previously unselected package fonts-mathjax. 189s Preparing to unpack .../008-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 189s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 189s Selecting previously unselected package gdal-data. 189s Preparing to unpack .../009-gdal-data_3.8.4+dfsg-1_all.deb ... 189s Unpacking gdal-data (3.8.4+dfsg-1) ... 189s Selecting previously unselected package gdal-plugins:arm64. 189s Preparing to unpack .../010-gdal-plugins_3.8.4+dfsg-1_arm64.deb ... 189s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-1) ... 189s Selecting previously unselected package javascript-common. 189s Preparing to unpack .../011-javascript-common_11+nmu1_all.deb ... 189s Unpacking javascript-common (11+nmu1) ... 189s Selecting previously unselected package libaec0:arm64. 189s Preparing to unpack .../012-libaec0_1.1.2-1_arm64.deb ... 189s Unpacking libaec0:arm64 (1.1.2-1) ... 189s Selecting previously unselected package libblas3:arm64. 189s Preparing to unpack .../013-libblas3_3.12.0-3_arm64.deb ... 189s Unpacking libblas3:arm64 (3.12.0-3) ... 189s Selecting previously unselected package libgfortran5:arm64. 189s Preparing to unpack .../014-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 189s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 189s Selecting previously unselected package liblapack3:arm64. 189s Preparing to unpack .../015-liblapack3_3.12.0-3_arm64.deb ... 189s Unpacking liblapack3:arm64 (3.12.0-3) ... 189s Selecting previously unselected package libarpack2:arm64. 189s Preparing to unpack .../016-libarpack2_3.9.1-1_arm64.deb ... 189s Unpacking libarpack2:arm64 (3.9.1-1) ... 189s Selecting previously unselected package libsuperlu6:arm64. 189s Preparing to unpack .../017-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 189s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 189s Selecting previously unselected package libarmadillo12. 189s Preparing to unpack .../018-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 189s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 189s Selecting previously unselected package libsnappy1v5:arm64. 189s Preparing to unpack .../019-libsnappy1v5_1.1.10-1_arm64.deb ... 189s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 189s Selecting previously unselected package libblosc1:arm64. 189s Preparing to unpack .../020-libblosc1_1.21.5+ds-1_arm64.deb ... 189s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 189s Selecting previously unselected package libpixman-1-0:arm64. 189s Preparing to unpack .../021-libpixman-1-0_0.42.2-1_arm64.deb ... 189s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 189s Selecting previously unselected package libxcb-render0:arm64. 189s Preparing to unpack .../022-libxcb-render0_1.15-1_arm64.deb ... 189s Unpacking libxcb-render0:arm64 (1.15-1) ... 189s Selecting previously unselected package libxcb-shm0:arm64. 189s Preparing to unpack .../023-libxcb-shm0_1.15-1_arm64.deb ... 189s Unpacking libxcb-shm0:arm64 (1.15-1) ... 189s Selecting previously unselected package libxrender1:arm64. 189s Preparing to unpack .../024-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 189s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 189s Selecting previously unselected package libcairo2:arm64. 189s Preparing to unpack .../025-libcairo2_1.18.0-1_arm64.deb ... 189s Unpacking libcairo2:arm64 (1.18.0-1) ... 189s Selecting previously unselected package libcfitsio10:arm64. 189s Preparing to unpack .../026-libcfitsio10_4.3.1-1_arm64.deb ... 189s Unpacking libcfitsio10:arm64 (4.3.1-1) ... 190s Selecting previously unselected package libdatrie1:arm64. 190s Preparing to unpack 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Selecting previously unselected package libfreexl1:arm64. 190s Preparing to unpack .../033-libfreexl1_2.0.0-1_arm64.deb ... 190s Unpacking libfreexl1:arm64 (2.0.0-1) ... 190s Selecting previously unselected package libgeos3.12.1:arm64. 190s Preparing to unpack .../034-libgeos3.12.1_3.12.1-1_arm64.deb ... 190s Unpacking libgeos3.12.1:arm64 (3.12.1-1) ... 190s Selecting previously unselected package libgeos-c1v5:arm64. 190s Preparing to unpack .../035-libgeos-c1v5_3.12.1-1_arm64.deb ... 190s Unpacking libgeos-c1v5:arm64 (3.12.1-1) ... 190s Selecting previously unselected package proj-data. 190s Preparing to unpack .../036-proj-data_9.3.1-1_all.deb ... 190s Unpacking proj-data (9.3.1-1) ... 190s Selecting previously unselected package libjbig0:arm64. 190s Preparing to unpack .../037-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 190s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 190s Selecting previously unselected package libjpeg-turbo8:arm64. 190s Preparing to unpack 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libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 191s Selecting previously unselected package libproj25:arm64. 191s Preparing to unpack .../044-libproj25_9.3.1-1_arm64.deb ... 191s Unpacking libproj25:arm64 (9.3.1-1) ... 191s Selecting previously unselected package libgeotiff5:arm64. 191s Preparing to unpack .../045-libgeotiff5_1.7.1-5_arm64.deb ... 191s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 191s Selecting previously unselected package libgif7:arm64. 191s Preparing to unpack .../046-libgif7_5.2.1-2.5_arm64.deb ... 191s Unpacking libgif7:arm64 (5.2.1-2.5) ... 191s Selecting previously unselected package libhdf4-0-alt. 191s Preparing to unpack .../047-libhdf4-0-alt_4.2.16-3_arm64.deb ... 191s Unpacking libhdf4-0-alt (4.2.16-3) ... 191s Selecting previously unselected package libsz2:arm64. 191s Preparing to unpack .../048-libsz2_1.1.2-1_arm64.deb ... 191s Unpacking libsz2:arm64 (1.1.2-1) ... 191s Selecting previously unselected package libhdf5-103-1:arm64. 191s Preparing to unpack .../049-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 191s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 191s Selecting previously unselected package libheif-plugin-dav1d:arm64. 191s Preparing to unpack .../050-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 191s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 191s Selecting previously unselected package libheif-plugin-libde265:arm64. 191s Preparing to unpack .../051-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 191s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 191s Selecting previously unselected package libheif1:arm64. 191s Preparing to unpack .../052-libheif1_1.17.6-1ubuntu1_arm64.deb ... 191s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 191s Selecting previously unselected package liburiparser1:arm64. 191s Preparing to unpack .../053-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 191s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 191s Selecting previously unselected package libkmlbase1:arm64. 191s Preparing to unpack .../054-libkmlbase1_1.3.0-10_arm64.deb ... 191s Unpacking libkmlbase1:arm64 (1.3.0-10) ... 191s Selecting previously unselected package libkmldom1:arm64. 191s Preparing to unpack .../055-libkmldom1_1.3.0-10_arm64.deb ... 191s Unpacking libkmldom1:arm64 (1.3.0-10) ... 191s Selecting previously unselected package libkmlengine1:arm64. 191s Preparing to unpack .../056-libkmlengine1_1.3.0-10_arm64.deb ... 191s Unpacking libkmlengine1:arm64 (1.3.0-10) ... 191s Selecting previously unselected package mysql-common. 191s Preparing to unpack .../057-mysql-common_5.8+1.1.0_all.deb ... 191s Unpacking mysql-common (5.8+1.1.0) ... 191s Selecting previously unselected package libmysqlclient21:arm64. 191s Preparing to unpack .../058-libmysqlclient21_8.0.36-1_arm64.deb ... 191s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 192s Selecting previously unselected package libhdf5-hl-100:arm64. 192s Preparing to unpack .../059-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 192s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 192s Selecting previously unselected package libnetcdf19:arm64. 192s Preparing to unpack .../060-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 192s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 192s Selecting previously unselected package libltdl7:arm64. 192s Preparing to unpack .../061-libltdl7_2.4.7-7_arm64.deb ... 192s Unpacking libltdl7:arm64 (2.4.7-7) ... 192s Selecting previously unselected package libodbc2:arm64. 192s Preparing to unpack .../062-libodbc2_2.3.12-1_arm64.deb ... 192s Unpacking libodbc2:arm64 (2.3.12-1) ... 192s Selecting previously unselected package unixodbc-common. 192s Preparing to unpack .../063-unixodbc-common_2.3.12-1_all.deb ... 192s Unpacking unixodbc-common (2.3.12-1) ... 192s Selecting previously unselected package libodbcinst2:arm64. 192s Preparing to unpack .../064-libodbcinst2_2.3.12-1_arm64.deb ... 192s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 192s Selecting previously unselected package libogdi4.1. 192s Preparing to unpack .../065-libogdi4.1_4.1.1+ds-1_arm64.deb ... 192s Unpacking libogdi4.1 (4.1.1+ds-1) ... 192s Selecting previously unselected package libopenjp2-7:arm64. 192s Preparing to unpack .../066-libopenjp2-7_2.5.0-2_arm64.deb ... 192s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 192s Selecting previously unselected package liblcms2-2:arm64. 192s Preparing to unpack .../067-liblcms2-2_2.14-2_arm64.deb ... 192s Unpacking liblcms2-2:arm64 (2.14-2) ... 192s Selecting previously unselected package libpoppler134:arm64. 192s Preparing to unpack .../068-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 192s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 192s Selecting previously unselected package libpq5:arm64. 192s Preparing to unpack .../069-libpq5_16.2-1_arm64.deb ... 192s Unpacking libpq5:arm64 (16.2-1) ... 192s Selecting previously unselected package libqhull-r8.0:arm64. 192s Preparing to unpack .../070-libqhull-r8.0_2020.2-6_arm64.deb ... 192s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 192s Selecting previously unselected package librttopo1:arm64. 192s Preparing to unpack .../071-librttopo1_1.1.0-3_arm64.deb ... 192s Unpacking librttopo1:arm64 (1.1.0-3) ... 192s Selecting previously unselected package libspatialite8:arm64. 192s Preparing to unpack .../072-libspatialite8_5.1.0-1_arm64.deb ... 192s Unpacking libspatialite8:arm64 (5.1.0-1) ... 192s Selecting previously unselected package libxerces-c3.2:arm64. 192s Preparing to unpack .../073-libxerces-c3.2_3.2.4+debian-1.1_arm64.deb ... 192s Unpacking libxerces-c3.2:arm64 (3.2.4+debian-1.1) ... 192s Selecting previously unselected package libgdal34:arm64. 192s Preparing to unpack .../074-libgdal34_3.8.4+dfsg-1_arm64.deb ... 192s Unpacking libgdal34:arm64 (3.8.4+dfsg-1) ... 192s Selecting previously unselected package libgomp1:arm64. 192s Preparing to unpack .../075-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libgraphite2-3:arm64. 192s Preparing to unpack .../076-libgraphite2-3_1.3.14-2_arm64.deb ... 192s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 192s Selecting previously unselected package libharfbuzz0b:arm64. 193s Preparing to unpack .../077-libharfbuzz0b_8.3.0-2_arm64.deb ... 193s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 193s Selecting previously unselected package x11-common. 193s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 193s Unpacking x11-common (1:7.7+23ubuntu2) ... 193s Selecting previously unselected package libice6:arm64. 193s Preparing to unpack .../079-libice6_2%3a1.0.10-1build2_arm64.deb ... 193s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 193s Selecting previously unselected package libjs-bootstrap. 193s Preparing to unpack .../080-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 193s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 193s Selecting previously unselected package libjs-popper.js. 193s Preparing to unpack .../081-libjs-popper.js_1.16.1+ds-6_all.deb ... 193s Unpacking libjs-popper.js (1.16.1+ds-6) ... 193s Selecting previously unselected package libjs-bootstrap4. 193s Preparing to unpack .../082-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 193s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 193s Selecting previously unselected package libjs-d3. 193s Preparing to unpack .../083-libjs-d3_3.5.17-4_all.deb ... 193s Unpacking libjs-d3 (3.5.17-4) ... 193s Selecting previously unselected package libjs-es5-shim. 193s Preparing to unpack .../084-libjs-es5-shim_4.6.7-2_all.deb ... 193s Unpacking libjs-es5-shim (4.6.7-2) ... 193s Selecting previously unselected package libjs-highlight.js. 193s Preparing to unpack .../085-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 193s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 193s Selecting previously unselected package libjs-jquery. 193s Preparing to unpack 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Preparing to unpack .../091-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 193s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 193s Selecting previously unselected package libjs-json. 193s Preparing to unpack .../092-libjs-json_0~20221030+~1.0.8-1_all.deb ... 193s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 193s Selecting previously unselected package libjs-prettify. 193s Preparing to unpack .../093-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 193s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 193s Selecting previously unselected package liblua5.4-0:arm64. 193s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_arm64.deb ... 193s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 193s Selecting previously unselected package libthai-data. 193s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 193s Unpacking libthai-data (0.1.29-2) ... 193s Selecting previously unselected package libthai0:arm64. 193s Preparing to unpack .../096-libthai0_0.1.29-2_arm64.deb ... 193s Unpacking libthai0:arm64 (0.1.29-2) ... 193s Selecting previously unselected package libpango-1.0-0:arm64. 193s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 193s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 194s Selecting previously unselected package libpangoft2-1.0-0:arm64. 194s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 194s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 194s Selecting previously unselected package libpangocairo-1.0-0:arm64. 194s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 194s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 194s Selecting previously unselected package libpaper1:arm64. 194s Preparing to unpack .../100-libpaper1_1.1.29_arm64.deb ... 194s Unpacking libpaper1:arm64 (1.1.29) ... 194s Selecting previously unselected package libpaper-utils. 194s Preparing to unpack .../101-libpaper-utils_1.1.29_arm64.deb ... 194s Unpacking libpaper-utils (1.1.29) ... 194s Selecting previously unselected package libsm6:arm64. 194s Preparing to unpack .../102-libsm6_2%3a1.2.3-1build2_arm64.deb ... 194s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 194s Selecting previously unselected package libtcl8.6:arm64. 194s Preparing to unpack .../103-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 194s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 194s Selecting previously unselected package libxft2:arm64. 194s Preparing to unpack .../104-libxft2_2.3.6-1_arm64.deb ... 194s Unpacking libxft2:arm64 (2.3.6-1) ... 194s Selecting previously unselected package libxss1:arm64. 194s Preparing to unpack .../105-libxss1_1%3a1.2.3-1build2_arm64.deb ... 194s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 194s Selecting previously unselected package libtk8.6:arm64. 194s Preparing to unpack .../106-libtk8.6_8.6.13-2_arm64.deb ... 194s Unpacking libtk8.6:arm64 (8.6.13-2) ... 194s Selecting previously unselected package libudunits2-data. 194s Preparing to unpack .../107-libudunits2-data_2.2.28-7_all.deb ... 194s Unpacking libudunits2-data (2.2.28-7) ... 194s Selecting previously unselected package libudunits2-0. 194s Preparing to unpack .../108-libudunits2-0_2.2.28-7_arm64.deb ... 194s Unpacking libudunits2-0 (2.2.28-7) ... 194s Selecting previously unselected package libxt6t64:arm64. 194s Preparing to unpack .../109-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 194s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 194s Selecting previously unselected package zip. 194s Preparing to unpack .../110-zip_3.0-13_arm64.deb ... 194s Unpacking zip (3.0-13) ... 194s Selecting previously unselected package unzip. 194s Preparing to unpack .../111-unzip_6.0-28ubuntu3_arm64.deb ... 194s Unpacking unzip (6.0-28ubuntu3) ... 194s Selecting previously unselected package xdg-utils. 194s Preparing to unpack .../112-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 194s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 194s Selecting previously unselected package r-base-core. 194s Preparing to unpack .../113-r-base-core_4.3.3-2build1_arm64.deb ... 194s Unpacking r-base-core (4.3.3-2build1) ... 195s Selecting previously unselected package r-cran-littler. 195s Preparing to unpack .../114-r-cran-littler_0.3.19-1_arm64.deb ... 195s Unpacking r-cran-littler (0.3.19-1) ... 195s Selecting previously unselected package littler. 195s Preparing to unpack .../115-littler_0.3.19-1_all.deb ... 195s Unpacking littler (0.3.19-1) ... 195s Selecting previously unselected package node-bootstrap-sass. 195s Preparing to unpack .../116-node-bootstrap-sass_3.4.3-2_all.deb ... 195s Unpacking node-bootstrap-sass (3.4.3-2) ... 195s Selecting previously unselected package node-html5shiv. 195s Preparing to unpack .../117-node-html5shiv_3.7.3+dfsg-5_all.deb ... 195s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 195s Selecting previously unselected package node-normalize.css. 195s Preparing to unpack .../118-node-normalize.css_8.0.1-5_all.deb ... 195s Unpacking node-normalize.css (8.0.1-5) ... 195s Selecting previously unselected package pandoc-data. 195s Preparing to unpack .../119-pandoc-data_3.1.3-1_all.deb ... 195s Unpacking pandoc-data (3.1.3-1) ... 195s Selecting previously unselected package pandoc. 195s Preparing to unpack .../120-pandoc_3.1.3+ds-2_arm64.deb ... 195s Unpacking pandoc (3.1.3+ds-2) ... 196s Selecting previously unselected package r-cran-abind. 196s Preparing to unpack .../121-r-cran-abind_1.4-5-2_all.deb ... 196s Unpacking r-cran-abind (1.4-5-2) ... 196s Selecting previously unselected package r-cran-mass. 196s Preparing to unpack .../122-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 196s Unpacking r-cran-mass (7.3-60.0.1-1) ... 196s Selecting previously unselected package r-cran-pixmap. 196s Preparing to unpack .../123-r-cran-pixmap_0.4-12-1_all.deb ... 196s Unpacking r-cran-pixmap (0.4-12-1) ... 196s Selecting previously unselected package r-cran-lattice. 196s Preparing to unpack .../124-r-cran-lattice_0.22-5-1_arm64.deb ... 196s Unpacking r-cran-lattice (0.22-5-1) ... 196s Selecting previously unselected package r-cran-sp. 196s Preparing to unpack .../125-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 196s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 196s Selecting previously unselected package r-cran-pkgkitten. 196s Preparing to unpack .../126-r-cran-pkgkitten_0.2.3-1_all.deb ... 196s Unpacking r-cran-pkgkitten (0.2.3-1) ... 196s Selecting previously unselected package r-cran-rcpp. 196s Preparing to unpack .../127-r-cran-rcpp_1.0.12-1_arm64.deb ... 196s Unpacking r-cran-rcpp (1.0.12-1) ... 197s Selecting previously unselected package r-cran-rcpparmadillo. 197s Preparing to unpack .../128-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 197s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 197s Selecting previously unselected package r-cran-ade4. 197s Preparing to unpack .../129-r-cran-ade4_1.7-22-1_arm64.deb ... 197s Unpacking r-cran-ade4 (1.7-22-1) ... 197s Selecting previously unselected package r-cran-kernsmooth. 197s Preparing to unpack .../130-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 197s Unpacking r-cran-kernsmooth (2.23-22-1) ... 197s Selecting previously unselected package r-cran-png. 197s Preparing to unpack .../131-r-cran-png_0.1-8-1_arm64.deb ... 197s Unpacking r-cran-png (0.1-8-1) ... 197s Selecting previously unselected package r-cran-jpeg. 197s Preparing to unpack .../132-r-cran-jpeg_0.1-10-1_arm64.deb ... 197s Unpacking r-cran-jpeg (0.1-10-1) ... 197s Selecting previously unselected package r-cran-rcolorbrewer. 197s Preparing to unpack .../133-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 197s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 197s Selecting previously unselected package r-cran-deldir. 197s Preparing to unpack .../134-r-cran-deldir_2.0-4-1_arm64.deb ... 197s Unpacking r-cran-deldir (2.0-4-1) ... 197s Selecting previously unselected package r-cran-matrix. 197s Preparing to unpack .../135-r-cran-matrix_1.6-5-1_arm64.deb ... 197s Unpacking r-cran-matrix (1.6-5-1) ... 197s Selecting previously unselected package r-cran-rcppeigen. 197s Preparing to unpack .../136-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 197s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 197s Selecting previously unselected package r-cran-interp. 197s Preparing to unpack .../137-r-cran-interp_1.1-6-1_arm64.deb ... 197s Unpacking r-cran-interp (1.1-6-1) ... 197s Selecting previously unselected package r-cran-latticeextra. 197s Preparing to unpack .../138-r-cran-latticeextra_0.6-30-1_all.deb ... 197s Unpacking r-cran-latticeextra (0.6-30-1) ... 197s Selecting previously unselected package r-cran-adegraphics. 197s Preparing to unpack .../139-r-cran-adegraphics_1.0-21-1_all.deb ... 197s Unpacking r-cran-adegraphics (1.0-21-1) ... 197s Selecting previously unselected package r-cran-backports. 197s Preparing to unpack .../140-r-cran-backports_1.4.1-1_arm64.deb ... 197s Unpacking r-cran-backports (1.4.1-1) ... 197s Selecting previously unselected package r-cran-base64enc. 197s Preparing to unpack .../141-r-cran-base64enc_0.1-3-3_arm64.deb ... 197s Unpacking r-cran-base64enc (0.1-3-3) ... 198s Selecting previously unselected package r-cran-bit. 198s Preparing to unpack .../142-r-cran-bit_4.0.5-1_arm64.deb ... 198s Unpacking r-cran-bit (4.0.5-1) ... 198s Selecting previously unselected package r-cran-bit64. 198s Preparing to unpack .../143-r-cran-bit64_4.0.5-1_arm64.deb ... 198s Unpacking r-cran-bit64 (4.0.5-1) ... 198s Selecting previously unselected package r-cran-boot. 198s Preparing to unpack .../144-r-cran-boot_1.3-30-1_all.deb ... 198s Unpacking r-cran-boot (1.3-30-1) ... 198s Selecting previously unselected package r-cran-brio. 198s Preparing to unpack .../145-r-cran-brio_1.1.4-1_arm64.deb ... 198s Unpacking r-cran-brio (1.1.4-1) ... 198s Selecting previously unselected package r-cran-cli. 198s Preparing to unpack .../146-r-cran-cli_3.6.2-1_arm64.deb ... 198s Unpacking r-cran-cli (3.6.2-1) ... 198s Selecting previously unselected package r-cran-generics. 198s Preparing to unpack .../147-r-cran-generics_0.1.3-1_all.deb ... 198s Unpacking r-cran-generics (0.1.3-1) ... 198s Selecting previously unselected package r-cran-glue. 198s Preparing to unpack .../148-r-cran-glue_1.7.0-1_arm64.deb ... 198s Unpacking r-cran-glue (1.7.0-1) ... 198s Selecting previously unselected package r-cran-rlang. 198s Preparing to unpack .../149-r-cran-rlang_1.1.3-1_arm64.deb ... 198s Unpacking r-cran-rlang (1.1.3-1) ... 198s Selecting previously unselected package r-cran-lifecycle. 198s Preparing to unpack .../150-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 198s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 198s Selecting previously unselected package r-cran-magrittr. 198s Preparing to unpack .../151-r-cran-magrittr_2.0.3-1_arm64.deb ... 198s Unpacking r-cran-magrittr (2.0.3-1) ... 198s Selecting previously unselected package r-cran-fansi. 198s Preparing to unpack .../152-r-cran-fansi_1.0.5-1_arm64.deb ... 198s Unpacking r-cran-fansi (1.0.5-1) ... 198s Selecting previously unselected package r-cran-utf8. 198s Preparing to unpack .../153-r-cran-utf8_1.2.4-1_arm64.deb ... 198s Unpacking r-cran-utf8 (1.2.4-1) ... 198s Selecting previously unselected package r-cran-vctrs. 198s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 198s Unpacking r-cran-vctrs (0.6.5-1) ... 198s Selecting previously unselected package r-cran-pillar. 199s Preparing to unpack .../155-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 199s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-r6. 199s Preparing to unpack .../156-r-cran-r6_2.5.1-1_all.deb ... 199s Unpacking r-cran-r6 (2.5.1-1) ... 199s Selecting previously unselected package r-cran-pkgconfig. 199s Preparing to unpack .../157-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 199s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 199s Selecting previously unselected package r-cran-tibble. 199s Preparing to unpack .../158-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 199s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 199s Selecting previously unselected package r-cran-withr. 199s Preparing to unpack .../159-r-cran-withr_2.5.0-1_all.deb ... 199s Unpacking r-cran-withr (2.5.0-1) ... 199s Selecting previously unselected package r-cran-tidyselect. 199s Preparing to unpack .../160-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 199s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 199s Selecting previously unselected package r-cran-dplyr. 199s Preparing to unpack .../161-r-cran-dplyr_1.1.4-1_arm64.deb ... 199s Unpacking r-cran-dplyr (1.1.4-1) ... 199s Selecting previously unselected package r-cran-ellipsis. 199s Preparing to unpack .../162-r-cran-ellipsis_0.3.2-2_arm64.deb ... 199s Unpacking r-cran-ellipsis (0.3.2-2) ... 199s Selecting previously unselected package r-cran-purrr. 199s Preparing to unpack .../163-r-cran-purrr_1.0.2-1_arm64.deb ... 199s Unpacking r-cran-purrr (1.0.2-1) ... 199s Selecting previously unselected package r-cran-stringi. 199s Preparing to unpack .../164-r-cran-stringi_1.8.3-1_arm64.deb ... 199s Unpacking r-cran-stringi (1.8.3-1) ... 199s Selecting previously unselected package r-cran-stringr. 199s Preparing to unpack .../165-r-cran-stringr_1.5.1-1_all.deb ... 199s Unpacking r-cran-stringr (1.5.1-1) ... 199s Selecting previously unselected package r-cran-cpp11. 199s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 199s Unpacking r-cran-cpp11 (0.4.7-1) ... 199s Selecting previously unselected package r-cran-tidyr. 199s Preparing to unpack .../167-r-cran-tidyr_1.3.1-1_arm64.deb ... 199s Unpacking r-cran-tidyr (1.3.1-1) ... 199s Selecting previously unselected package r-cran-broom. 199s Preparing to unpack .../168-r-cran-broom_1.0.5+dfsg-1_all.deb ... 199s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 199s Selecting previously unselected package r-cran-fastmap. 199s Preparing to unpack .../169-r-cran-fastmap_1.1.1-1_arm64.deb ... 199s Unpacking r-cran-fastmap (1.1.1-1) ... 199s Selecting previously unselected package r-cran-cachem. 199s Preparing to unpack .../170-r-cran-cachem_1.0.8-1_arm64.deb ... 199s Unpacking r-cran-cachem (1.0.8-1) ... 199s Selecting previously unselected package r-cran-digest. 200s Preparing to unpack .../171-r-cran-digest_0.6.34-1_arm64.deb ... 200s Unpacking r-cran-digest (0.6.34-1) ... 200s Selecting previously unselected package r-cran-htmltools. 200s Preparing to unpack .../172-r-cran-htmltools_0.5.7-1_arm64.deb ... 200s Unpacking r-cran-htmltools (0.5.7-1) ... 200s Selecting previously unselected package r-cran-jquerylib. 200s Preparing to unpack .../173-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 200s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 200s Selecting previously unselected package r-cran-jsonlite. 200s Preparing to unpack .../174-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 200s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 200s Selecting previously unselected package r-cran-memoise. 200s Preparing to unpack .../175-r-cran-memoise_2.0.1-1_all.deb ... 200s Unpacking r-cran-memoise (2.0.1-1) ... 200s Selecting previously unselected package r-cran-mime. 200s Preparing to unpack .../176-r-cran-mime_0.12-1_arm64.deb ... 200s Unpacking r-cran-mime (0.12-1) ... 200s Selecting previously unselected package r-cran-fs. 200s Preparing to unpack .../177-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 200s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 200s Selecting previously unselected package r-cran-rappdirs. 200s Preparing to unpack .../178-r-cran-rappdirs_0.3.3-1_arm64.deb ... 200s Unpacking r-cran-rappdirs (0.3.3-1) ... 200s Selecting previously unselected package r-cran-sass. 200s Preparing to unpack .../179-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 200s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 200s Selecting previously unselected package r-cran-bslib. 200s Preparing to unpack .../180-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 200s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 200s Selecting previously unselected package r-cran-ps. 200s Preparing to unpack .../181-r-cran-ps_1.7.6-1_arm64.deb ... 200s Unpacking r-cran-ps (1.7.6-1) ... 200s Selecting previously unselected package r-cran-processx. 200s Preparing to unpack .../182-r-cran-processx_3.8.3-1_arm64.deb ... 200s Unpacking r-cran-processx (3.8.3-1) ... 200s Selecting previously unselected package r-cran-callr. 200s Preparing to unpack .../183-r-cran-callr_3.7.3-2_all.deb ... 200s Unpacking r-cran-callr (3.7.3-2) ... 200s Selecting previously unselected package r-cran-cardata. 200s Preparing to unpack .../184-r-cran-cardata_3.0.5-1_all.deb ... 200s Unpacking r-cran-cardata (3.0.5-1) ... 200s Selecting previously unselected package r-cran-nlme. 200s Preparing to unpack .../185-r-cran-nlme_3.1.164-1_arm64.deb ... 200s Unpacking r-cran-nlme (3.1.164-1) ... 200s Selecting previously unselected package r-cran-mgcv. 200s Preparing to unpack .../186-r-cran-mgcv_1.9-1-1_arm64.deb ... 200s Unpacking r-cran-mgcv (1.9-1-1) ... 200s Selecting previously unselected package r-cran-nnet. 200s Preparing to unpack .../187-r-cran-nnet_7.3-19-2_arm64.deb ... 200s Unpacking r-cran-nnet (7.3-19-2) ... 200s Selecting previously unselected package r-cran-minqa. 200s Preparing to unpack .../188-r-cran-minqa_1.2.6-1_arm64.deb ... 200s Unpacking r-cran-minqa (1.2.6-1) ... 200s Selecting previously unselected package libnlopt0:arm64. 200s Preparing to unpack .../189-libnlopt0_2.7.1-5build2_arm64.deb ... 200s Unpacking libnlopt0:arm64 (2.7.1-5build2) ... 200s Selecting previously unselected package r-cran-desc. 200s Preparing to unpack .../190-r-cran-desc_1.4.3-1_all.deb ... 200s Unpacking r-cran-desc (1.4.3-1) ... 200s Selecting previously unselected package r-cran-evaluate. 201s Preparing to unpack .../191-r-cran-evaluate_0.23-1_all.deb ... 201s Unpacking r-cran-evaluate (0.23-1) ... 201s Selecting previously unselected package r-cran-crayon. 201s Preparing to unpack .../192-r-cran-crayon_1.5.2-1_all.deb ... 201s Unpacking r-cran-crayon (1.5.2-1) ... 201s Selecting previously unselected package r-cran-pkgbuild. 201s Preparing to unpack .../193-r-cran-pkgbuild_1.4.3-1_all.deb ... 201s Unpacking r-cran-pkgbuild (1.4.3-1) ... 201s Selecting previously unselected package r-cran-rprojroot. 201s Preparing to unpack .../194-r-cran-rprojroot_2.0.4-1_all.deb ... 201s Unpacking r-cran-rprojroot (2.0.4-1) ... 201s Selecting previously unselected package r-cran-pkgload. 201s Preparing to unpack .../195-r-cran-pkgload_1.3.4-1_all.deb ... 201s Unpacking r-cran-pkgload (1.3.4-1) ... 201s Selecting previously unselected package r-cran-praise. 201s Preparing to unpack .../196-r-cran-praise_1.0.0-4build1_all.deb ... 201s Unpacking r-cran-praise (1.0.0-4build1) ... 201s Selecting previously unselected package r-cran-diffobj. 201s Preparing to unpack .../197-r-cran-diffobj_0.3.5-1_arm64.deb ... 201s Unpacking r-cran-diffobj (0.3.5-1) ... 201s Selecting previously unselected package r-cran-rematch2. 201s Preparing to unpack .../198-r-cran-rematch2_2.1.2-2build1_all.deb ... 201s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 201s Selecting previously unselected package r-cran-waldo. 201s Preparing to unpack .../199-r-cran-waldo_0.5.2-1build1_all.deb ... 201s Unpacking r-cran-waldo (0.5.2-1build1) ... 201s Selecting previously unselected package r-cran-testthat. 201s Preparing to unpack .../200-r-cran-testthat_3.2.1-1_arm64.deb ... 201s Unpacking r-cran-testthat (3.2.1-1) ... 201s Selecting previously unselected package r-cran-nloptr. 201s Preparing to unpack .../201-r-cran-nloptr_2.0.3-1_arm64.deb ... 201s Unpacking r-cran-nloptr (2.0.3-1) ... 201s Selecting previously unselected package r-cran-statmod. 201s Preparing to unpack .../202-r-cran-statmod_1.5.0-1_arm64.deb ... 201s Unpacking r-cran-statmod (1.5.0-1) ... 201s Selecting previously unselected package r-cran-lme4. 201s Preparing to unpack .../203-r-cran-lme4_1.1-35.1-4_arm64.deb ... 201s Unpacking r-cran-lme4 (1.1-35.1-4) ... 202s Selecting previously unselected package r-cran-numderiv. 202s Preparing to unpack .../204-r-cran-numderiv_2016.8-1.1-3_all.deb ... 202s Unpacking r-cran-numderiv (2016.8-1.1-3) ... 202s Selecting previously unselected package r-cran-xfun. 202s Preparing to unpack .../205-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 202s Unpacking r-cran-xfun (0.41+dfsg-1) ... 202s Selecting previously unselected package r-cran-highr. 202s Preparing to unpack .../206-r-cran-highr_0.10+dfsg-1_all.deb ... 202s Unpacking r-cran-highr (0.10+dfsg-1) ... 202s Selecting previously unselected package r-cran-yaml. 202s Preparing to unpack .../207-r-cran-yaml_2.3.8-1_arm64.deb ... 202s Unpacking r-cran-yaml (2.3.8-1) ... 202s Selecting previously unselected package libjs-mathjax. 202s Preparing to unpack .../208-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 202s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 202s Selecting previously unselected package r-cran-knitr. 202s Preparing to unpack .../209-r-cran-knitr_1.45+dfsg-1_all.deb ... 202s Unpacking r-cran-knitr (1.45+dfsg-1) ... 202s Selecting previously unselected package r-cran-pbkrtest. 203s Preparing to unpack .../210-r-cran-pbkrtest_0.5.2-2_all.deb ... 203s Unpacking r-cran-pbkrtest (0.5.2-2) ... 203s Selecting previously unselected package r-cran-sparsem. 203s Preparing to unpack .../211-r-cran-sparsem_1.81-1_arm64.deb ... 203s Unpacking r-cran-sparsem (1.81-1) ... 203s Selecting previously unselected package r-cran-matrixmodels. 203s Preparing to unpack .../212-r-cran-matrixmodels_0.5-3-1_all.deb ... 203s Unpacking r-cran-matrixmodels (0.5-3-1) ... 203s Selecting previously unselected package r-cran-survival. 203s Preparing to unpack .../213-r-cran-survival_3.5-8-1_arm64.deb ... 203s Unpacking r-cran-survival (3.5-8-1) ... 203s Selecting previously unselected package r-cran-matrixstats. 203s Preparing to unpack .../214-r-cran-matrixstats_1.2.0-1_arm64.deb ... 203s Unpacking r-cran-matrixstats (1.2.0-1) ... 203s Selecting previously unselected package r-cran-gtable. 203s Preparing to unpack .../215-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 203s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 203s Selecting previously unselected package r-cran-isoband. 203s Preparing to unpack .../216-r-cran-isoband_0.2.7-1_arm64.deb ... 203s Unpacking r-cran-isoband (0.2.7-1) ... 203s Selecting previously unselected package r-cran-farver. 203s Preparing to unpack .../217-r-cran-farver_2.1.1-1_arm64.deb ... 203s Unpacking r-cran-farver (2.1.1-1) ... 203s Selecting previously unselected package r-cran-labeling. 203s Preparing to unpack .../218-r-cran-labeling_0.4.3-1_all.deb ... 203s Unpacking r-cran-labeling (0.4.3-1) ... 203s Selecting previously unselected package r-cran-colorspace. 203s Preparing to unpack .../219-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 203s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 203s Selecting previously unselected package r-cran-munsell. 203s Preparing to unpack .../220-r-cran-munsell_0.5.0-2build1_all.deb ... 203s Unpacking r-cran-munsell (0.5.0-2build1) ... 203s Selecting previously unselected package r-cran-viridislite. 203s Preparing to unpack .../221-r-cran-viridislite_0.4.2-2_all.deb ... 203s Unpacking r-cran-viridislite (0.4.2-2) ... 203s Selecting previously unselected package r-cran-scales. 203s Preparing to unpack .../222-r-cran-scales_1.3.0-1_all.deb ... 203s Unpacking r-cran-scales (1.3.0-1) ... 203s Selecting previously unselected package r-cran-ggplot2. 203s Preparing to unpack .../223-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 203s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 203s Selecting previously unselected package r-cran-class. 203s Preparing to unpack .../224-r-cran-class_7.3-22-2_arm64.deb ... 203s Unpacking r-cran-class (7.3-22-2) ... 203s Selecting previously unselected package r-cran-proxy. 204s Preparing to unpack .../225-r-cran-proxy_0.4-27-1_arm64.deb ... 204s Unpacking r-cran-proxy (0.4-27-1) ... 204s Selecting previously unselected package r-cran-e1071. 204s Preparing to unpack .../226-r-cran-e1071_1.7-14-1_arm64.deb ... 204s Unpacking r-cran-e1071 (1.7-14-1) ... 204s Selecting previously unselected package r-cran-codetools. 204s Preparing to unpack .../227-r-cran-codetools_0.2-19-1_all.deb ... 204s Unpacking r-cran-codetools (0.2-19-1) ... 204s Selecting previously unselected package r-cran-iterators. 204s Preparing to unpack .../228-r-cran-iterators_1.0.14-1_all.deb ... 204s Unpacking r-cran-iterators (1.0.14-1) ... 204s Selecting previously unselected package r-cran-foreach. 204s Preparing to unpack .../229-r-cran-foreach_1.5.2-1_all.deb ... 204s Unpacking r-cran-foreach (1.5.2-1) ... 204s Selecting previously unselected package r-cran-data.table. 204s Preparing to unpack .../230-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 204s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 204s Selecting previously unselected package r-cran-modelmetrics. 204s Preparing to unpack .../231-r-cran-modelmetrics_1.2.2.2-1build1_arm64.deb ... 204s Unpacking r-cran-modelmetrics (1.2.2.2-1build1) ... 204s Selecting previously unselected package r-cran-plyr. 204s Preparing to unpack .../232-r-cran-plyr_1.8.9-1_arm64.deb ... 204s Unpacking r-cran-plyr (1.8.9-1) ... 204s Selecting previously unselected package r-cran-proc. 204s Preparing to unpack .../233-r-cran-proc_1.18.5-1_arm64.deb ... 204s Unpacking r-cran-proc (1.18.5-1) ... 204s Selecting previously unselected package r-cran-tzdb. 204s Preparing to unpack .../234-r-cran-tzdb_0.4.0-2_arm64.deb ... 204s Unpacking r-cran-tzdb (0.4.0-2) ... 204s Selecting previously unselected package r-cran-clock. 204s Preparing to unpack .../235-r-cran-clock_0.7.0-1.1_arm64.deb ... 204s Unpacking r-cran-clock (0.7.0-1.1) ... 204s Selecting previously unselected package r-cran-gower. 204s Preparing to unpack .../236-r-cran-gower_1.0.1-1_arm64.deb ... 204s Unpacking r-cran-gower (1.0.1-1) ... 204s Selecting previously unselected package r-cran-hardhat. 204s Preparing to unpack .../237-r-cran-hardhat_1.3.1+dfsg-1_all.deb ... 204s Unpacking r-cran-hardhat (1.3.1+dfsg-1) ... 204s Selecting previously unselected package r-cran-rpart. 204s Preparing to unpack .../238-r-cran-rpart_4.1.23-1_arm64.deb ... 204s Unpacking r-cran-rpart (4.1.23-1) ... 205s Selecting previously unselected package r-cran-shape. 205s Preparing to unpack .../239-r-cran-shape_1.4.6-1_all.deb ... 205s Unpacking r-cran-shape (1.4.6-1) ... 205s Selecting previously unselected package r-cran-diagram. 205s Preparing to unpack .../240-r-cran-diagram_1.6.5-2_all.deb ... 205s Unpacking r-cran-diagram (1.6.5-2) ... 205s Selecting previously unselected package r-cran-globals. 205s Preparing to unpack .../241-r-cran-globals_0.16.2-1_all.deb ... 205s Unpacking r-cran-globals (0.16.2-1) ... 205s Selecting previously unselected package r-cran-listenv. 205s Preparing to unpack .../242-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 205s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 205s Selecting previously unselected package r-cran-parallelly. 205s Preparing to unpack .../243-r-cran-parallelly_1.37.1-1_arm64.deb ... 205s Unpacking r-cran-parallelly (1.37.1-1) ... 205s Selecting previously unselected package r-cran-future. 205s Preparing to unpack .../244-r-cran-future_1.33.1+dfsg-1_all.deb ... 205s Unpacking r-cran-future (1.33.1+dfsg-1) ... 205s Selecting previously unselected package r-cran-future.apply. 205s Preparing to unpack .../245-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 205s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 205s Selecting previously unselected package r-cran-progressr. 205s Preparing to unpack .../246-r-cran-progressr_0.14.0-1_all.deb ... 205s Unpacking r-cran-progressr (0.14.0-1) ... 205s Selecting previously unselected package r-cran-squarem. 205s Preparing to unpack .../247-r-cran-squarem_2021.1-1_all.deb ... 205s Unpacking r-cran-squarem (2021.1-1) ... 205s Selecting previously unselected package r-cran-lava. 205s Preparing to unpack .../248-r-cran-lava_1.7.3+dfsg-1_all.deb ... 205s Unpacking r-cran-lava (1.7.3+dfsg-1) ... 206s Selecting previously unselected package r-cran-prodlim. 206s Preparing to unpack .../249-r-cran-prodlim_2023.08.28-1_arm64.deb ... 206s Unpacking r-cran-prodlim (2023.08.28-1) ... 206s Selecting previously unselected package r-cran-ipred. 206s Preparing to unpack .../250-r-cran-ipred_0.9-14-1_arm64.deb ... 206s Unpacking r-cran-ipred (0.9-14-1) ... 206s Selecting previously unselected package r-cran-timechange. 206s Preparing to unpack .../251-r-cran-timechange_0.3.0-1_arm64.deb ... 206s Unpacking r-cran-timechange (0.3.0-1) ... 206s Selecting previously unselected package r-cran-lubridate. 206s Preparing to unpack .../252-r-cran-lubridate_1.9.3+dfsg-1_arm64.deb ... 206s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 206s Selecting previously unselected package r-cran-timedate. 206s Preparing to unpack .../253-r-cran-timedate_4032.109-1_arm64.deb ... 206s Unpacking r-cran-timedate (4032.109-1) ... 206s Selecting previously unselected package r-cran-recipes. 206s Preparing to unpack .../254-r-cran-recipes_1.0.9+dfsg-1_all.deb ... 206s Unpacking r-cran-recipes (1.0.9+dfsg-1) ... 206s Selecting previously unselected package r-cran-reshape2. 206s Preparing to unpack .../255-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 206s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 206s Selecting previously unselected package r-cran-caret. 206s Preparing to unpack .../256-r-cran-caret_6.0-94+dfsg-1_arm64.deb ... 206s Unpacking r-cran-caret (6.0-94+dfsg-1) ... 206s Selecting previously unselected package r-cran-conquer. 206s Preparing to unpack .../257-r-cran-conquer_1.3.3-1_arm64.deb ... 206s Unpacking r-cran-conquer (1.3.3-1) ... 206s Selecting previously unselected package r-cran-quantreg. 206s Preparing to unpack .../258-r-cran-quantreg_5.97-1_arm64.deb ... 206s Unpacking r-cran-quantreg (5.97-1) ... 206s Selecting previously unselected package r-cran-foreign. 206s Preparing to unpack .../259-r-cran-foreign_0.8.86-1_arm64.deb ... 206s Unpacking r-cran-foreign (0.8.86-1) ... 206s Selecting previously unselected package r-cran-maptools. 206s Preparing to unpack .../260-r-cran-maptools_1%3a1.1-8+dfsg-1_arm64.deb ... 206s Unpacking r-cran-maptools (1:1.1-8+dfsg-1) ... 206s Selecting previously unselected package r-cran-forcats. 206s Preparing to unpack .../261-r-cran-forcats_1.0.0-1_all.deb ... 206s Unpacking r-cran-forcats (1.0.0-1) ... 206s Selecting previously unselected package r-cran-hms. 206s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 206s Unpacking r-cran-hms (1.1.3-1) ... 206s Selecting previously unselected package r-cran-clipr. 206s Preparing to unpack .../263-r-cran-clipr_0.8.0-1_all.deb ... 206s Unpacking r-cran-clipr (0.8.0-1) ... 206s Selecting previously unselected package r-cran-prettyunits. 206s Preparing to unpack .../264-r-cran-prettyunits_1.2.0-1_all.deb ... 206s Unpacking r-cran-prettyunits (1.2.0-1) ... 207s Selecting previously unselected package r-cran-progress. 207s Preparing to unpack .../265-r-cran-progress_1.2.3-1_all.deb ... 207s Unpacking r-cran-progress (1.2.3-1) ... 207s Selecting previously unselected package r-cran-vroom. 207s Preparing to unpack .../266-r-cran-vroom_1.6.5-1_arm64.deb ... 207s Unpacking r-cran-vroom (1.6.5-1) ... 207s Selecting previously unselected package r-cran-readr. 207s Preparing to unpack .../267-r-cran-readr_2.1.5-1_arm64.deb ... 207s Unpacking r-cran-readr (2.1.5-1) ... 207s Selecting previously unselected package r-cran-haven. 207s Preparing to unpack .../268-r-cran-haven_2.5.4-1_arm64.deb ... 207s Unpacking r-cran-haven (2.5.4-1) ... 207s Selecting previously unselected package r-cran-curl. 207s Preparing to unpack .../269-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 207s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 207s Selecting previously unselected package r-cran-rematch. 207s Preparing to unpack .../270-r-cran-rematch_2.0.0-1_all.deb ... 207s Unpacking r-cran-rematch (2.0.0-1) ... 207s Selecting previously unselected package r-cran-cellranger. 207s Preparing to unpack .../271-r-cran-cellranger_1.1.0-3_all.deb ... 207s Unpacking r-cran-cellranger (1.1.0-3) ... 207s Selecting previously unselected package r-cran-readxl. 207s Preparing to unpack .../272-r-cran-readxl_1.4.3-1_arm64.deb ... 207s Unpacking r-cran-readxl (1.4.3-1) ... 207s Selecting previously unselected package r-cran-writexl. 207s Preparing to unpack .../273-r-cran-writexl_1.5.0-1_arm64.deb ... 207s Unpacking r-cran-writexl (1.5.0-1) ... 207s Selecting previously unselected package r-cran-r.methodss3. 207s Preparing to unpack .../274-r-cran-r.methodss3_1.8.2-1_all.deb ... 207s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 207s Selecting previously unselected package r-cran-r.oo. 207s Preparing to unpack .../275-r-cran-r.oo_1.26.0-1_all.deb ... 207s Unpacking r-cran-r.oo (1.26.0-1) ... 207s Selecting previously unselected package r-cran-r.utils. 207s Preparing to unpack .../276-r-cran-r.utils_2.12.3-1_all.deb ... 207s Unpacking r-cran-r.utils (2.12.3-1) ... 207s Selecting previously unselected package r-cran-zip. 207s Preparing to unpack .../277-r-cran-zip_2.3.1-1_arm64.deb ... 207s Unpacking r-cran-zip (2.3.1-1) ... 207s Selecting previously unselected package r-cran-openxlsx. 207s Preparing to unpack .../278-r-cran-openxlsx_4.2.5.2-1_arm64.deb ... 207s Unpacking r-cran-openxlsx (4.2.5.2-1) ... 207s Selecting previously unselected package r-cran-rio. 207s Preparing to unpack .../279-r-cran-rio_1.0.1-1_all.deb ... 207s Unpacking r-cran-rio (1.0.1-1) ... 207s Selecting previously unselected package r-cran-car. 208s Preparing to unpack .../280-r-cran-car_3.1-2-2_all.deb ... 208s Unpacking r-cran-car (3.1-2-2) ... 208s Selecting previously unselected package r-cran-classint. 208s Preparing to unpack .../281-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 208s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 208s Selecting previously unselected package r-cran-commonmark. 208s Preparing to unpack .../282-r-cran-commonmark_1.9.1-1_arm64.deb ... 208s Unpacking r-cran-commonmark (1.9.1-1) ... 208s Selecting previously unselected package r-cran-dbi. 208s Preparing to unpack .../283-r-cran-dbi_1.2.2-1_all.deb ... 208s Unpacking r-cran-dbi (1.2.2-1) ... 208s Selecting previously unselected package r-cran-fontawesome. 208s Preparing to unpack .../284-r-cran-fontawesome_0.5.2-1_all.deb ... 208s Unpacking r-cran-fontawesome (0.5.2-1) ... 208s Selecting previously unselected package r-cran-later. 208s Preparing to unpack .../285-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 208s Unpacking r-cran-later (1.3.2+dfsg-1) ... 208s Selecting previously unselected package r-cran-promises. 208s Preparing to unpack .../286-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 208s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 208s Selecting previously unselected package r-cran-httpuv. 208s Preparing to unpack .../287-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 208s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 208s Selecting previously unselected package r-cran-markdown. 208s Preparing to unpack .../288-r-cran-markdown_1.12+dfsg-1_all.deb ... 208s Unpacking r-cran-markdown (1.12+dfsg-1) ... 208s Selecting previously unselected package r-cran-tinytex. 208s Preparing to unpack .../289-r-cran-tinytex_0.49-1_all.deb ... 208s Unpacking r-cran-tinytex (0.49-1) ... 208s Selecting previously unselected package libjs-modernizr. 208s Preparing to unpack .../290-libjs-modernizr_2.6.2+ds1-5_all.deb ... 208s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 208s Selecting previously unselected package r-cran-xtable. 208s Preparing to unpack .../291-r-cran-xtable_1%3a1.8-4-2_all.deb ... 208s Unpacking r-cran-xtable (1:1.8-4-2) ... 208s Selecting previously unselected package r-cran-sourcetools. 208s Preparing to unpack .../292-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 208s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 208s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 208s Preparing to unpack .../293-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 208s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 208s Selecting previously unselected package r-cran-shiny. 208s Preparing to unpack .../294-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 208s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 209s Selecting previously unselected package r-cran-rmarkdown. 209s Preparing to unpack .../295-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 209s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 209s Selecting previously unselected package r-cran-wk. 209s Preparing to unpack .../296-r-cran-wk_0.9.1-1_arm64.deb ... 209s Unpacking r-cran-wk (0.9.1-1) ... 209s Selecting previously unselected package r-cran-s2. 209s Preparing to unpack .../297-r-cran-s2_1.1.6-1_arm64.deb ... 209s Unpacking r-cran-s2 (1.1.6-1) ... 209s Selecting previously unselected package r-cran-units. 209s Preparing to unpack .../298-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 209s Unpacking r-cran-units (0.8-5+dfsg-1) ... 209s Selecting previously unselected package r-cran-sf. 209s Preparing to unpack .../299-r-cran-sf_1.0-15+dfsg-1_arm64.deb ... 209s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 209s Selecting previously unselected package r-cran-spdata. 209s Preparing to unpack .../300-r-cran-spdata_2.3.0-1_all.deb ... 209s Unpacking r-cran-spdata (2.3.0-1) ... 209s Selecting previously unselected package r-cran-spdep. 209s Preparing to unpack .../301-r-cran-spdep_1.3-1+dfsg-1_arm64.deb ... 209s Unpacking r-cran-spdep (1.3-1+dfsg-1) ... 210s Selecting previously unselected package autopkgtest-satdep. 210s Preparing to unpack .../302-1-autopkgtest-satdep.deb ... 210s Unpacking autopkgtest-satdep (0) ... 210s Setting up libjs-json (0~20221030+~1.0.8-1) ... 210s Setting up javascript-common (11+nmu1) ... 210s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 210s Setting up liblcms2-2:arm64 (2.14-2) ... 210s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 210s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 210s Setting up libpaper1:arm64 (1.1.29) ... 210s 210s Creating config file /etc/papersize with new version 210s Setting up mysql-common (5.8+1.1.0) ... 210s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 210s Setting up libmysqlclient21:arm64 (8.0.36-1) ... 210s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 210s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 210s Setting up libxerces-c3.2:arm64 (3.2.4+debian-1.1) ... 210s Setting up proj-data (9.3.1-1) ... 210s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 210s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 210s Setting up libdatrie1:arm64 (0.2.13-3) ... 210s Setting up libjs-popper.js (1.16.1+ds-6) ... 210s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 210s Setting up libogdi4.1 (4.1.1+ds-1) ... 210s Setting up libminizip1:arm64 (1:1.3.dfsg-3ubuntu1) ... 210s Setting up 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(0.5.2-2) ... 214s Setting up r-cran-car (3.1-2-2) ... 214s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 214s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 214s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 214s Setting up libgdal34:arm64 (3.8.4+dfsg-1) ... 214s Setting up r-cran-sf (1.0-15+dfsg-1) ... 214s Setting up r-cran-spdep (1.3-1+dfsg-1) ... 214s Setting up autopkgtest-satdep (0) ... 214s Processing triggers for libc-bin (2.39-0ubuntu2) ... 214s Processing triggers for man-db (2.12.0-3) ... 215s Processing triggers for install-info (7.1-3) ... 232s (Reading database ... 100754 files and directories currently installed.) 232s Removing autopkgtest-satdep (0) ... 232s autopkgtest [17:52:48]: test run-unit-test: [----------------------- 234s 234s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 234s Copyright (C) 2024 The R Foundation for Statistical Computing 234s Platform: aarch64-unknown-linux-gnu (64-bit) 234s 234s R is free software and comes with ABSOLUTELY NO WARRANTY. 234s You are welcome to redistribute it under certain conditions. 234s Type 'license()' or 'licence()' for distribution details. 234s 234s R is a collaborative project with many contributors. 234s Type 'contributors()' for more information and 234s 'citation()' on how to cite R or R packages in publications. 234s 234s Type 'demo()' for some demos, 'help()' for on-line help, or 234s 'help.start()' for an HTML browser interface to help. 234s Type 'q()' to quit R. 234s 234s Registered S3 methods overwritten by 'adegraphics': 234s method from 234s biplot.dudi ade4 234s kplot.foucart ade4 234s kplot.mcoa ade4 234s kplot.mfa ade4 234s kplot.pta ade4 234s kplot.sepan ade4 234s kplot.statis ade4 234s scatter.coa ade4 234s scatter.dudi ade4 234s scatter.nipals ade4 234s scatter.pco ade4 234s score.acm ade4 234s score.mix ade4 234s score.pca ade4 234s screeplot.dudi ade4 234s > library(adegraphics) 234s > pdf("add.pdf") 234s > set.seed(40) 234s > 234s > ########################### add.ADEg ############################## 234s > 234s > data(granulo, package = "ade4") 234s > df <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 234s > pca <- ade4::dudi.pca(df, scal = FALSE, scan = FALSE) 234s > 234s > g1 <- s.arrow(ade4::dudi.pca(data.frame(df), scan = F, nf = 2)$co) 234s > g2 <- s.label(pca$li, plabels.cex = 0.5, plabels.col = "blue", plot = F) 234s > g3 <- add.ADEg(g2) 234s > g4 <- s.label(pca$c1, plabels.col = "red", add = T) 234s > 234s > g5 <- s.arrow(pca$c1, plabels.cex = 1.5, plot = FALSE) 234s > g6 <- ADEgS(list(g1 = g1, g5 = g5), layout = c(1, 2)) 234s > update(g6, pback.col = "lightblue", g1.plabels.cex = 2, g5.plabels.col = "red") 234s > 234s > 234s > ############################## addhist ############################## 234s > dfxy1 <- matrix(rnorm(200), ncol = 2) 234s > gh1 <- s.label(dfxy1) 234s > gh2 <- addhist(gh1) 235s > 235s > dfxy2 <- dfxy1 235s > dfxy2[, 2] <- dfxy2[, 2] + rnorm(100, 2) 235s > gh3 <- s.label(dfxy2) 235s > gh4 <- addhist(gh3, plot.polygon = list(col = "red")) 235s > 235s > data(rpjdl, package = "ade4") 235s > coa1 <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 235s > gh5 <- s.label(coa1$li) 235s > gh6 <- addhist(gh5) 235s > 235s > 235s > ############################## addtext ############################## 235s > # on a ADEg 235s > addtext(g1, -1, 1, "Data Granulo", plabels.cex = 1.5, plabels.col = "red") 235s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) # the two labels are superposed 235s > addtext(g1, -1, 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") # the two labels are superposed 235s > 235s > addtext(g1, c(-1, -0.5), 1, "Data Granulo", plabels.cex = 1.5, plabels.col = c("red", "blue")) 235s > addtext(g1, c(-1, -0.5), 1, c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = c("red", "blue")) 236s > 236s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = 1.5, plabels.col = "red") 236s > addtext(g1, -1, c(1, 0.9), c("Data", "Granulo"), plabels.cex = c(1.5, 2), plabels.col = "red") 236s > 236s > data(dunedata, package = "ade4") 236s > afc1 <- ade4::dudi.coa(dunedata$veg, scannf = FALSE) 236s > g7 <- table.value(dunedata$veg, symbol = "circle", ppoints.cex = 0.5, plot = FALSE) 236s > addtext(g7, 1, 20, "A", plabels.srt = 45, plabels.boxes.draw = FALSE) 236s > 236s > # on a ADEgS: juxtaposition 236s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1) 236s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("blue", "green"), which = 2) 236s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue"), which = 2) 236s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = "blue", which = 1:2) 236s > addtext(g6, 0.5, 0.5, "Text added", plabels.col = c("green4", "blue")) 236s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.col = "blue", plabels.cex = 1.2, which = 1:2) 236s > addtext(g6, c(0.7, -0.5), c(0.2, -0.4), "Text added", plabels.cex = c(0.5, 1.5), plabels.col = c("blue", "green4")) 237s > 237s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 237s > fac2 <- factor(xy2$x > 0) 237s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 237s > addtext(g9, 0, 0, "A", plabels.col = "red", plabels.cex = 2) 237s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col ="red", plabels.cex = 2, which = 1:2) 237s > addtext(g9, c(-2.1, -1.07), c(2, 1), c("A", "B"), plabels.col = c("green4", "red"), plabels.cex = c(3, 2), which = 1:2) 237s > 237s > # on a ADEgS: facets 237s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 237s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 237s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 237s > addtext(g10, c(0.5, 0.5, -0.5, -0.5), c(0.5, -0.5), levels(posi), plabels.cex = 2, plabels.col = 1:4) 238s > 238s > 238s > ############################## addline ############################## 238s > # on a 2D plot 238s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), plot = FALSE) 238s > addline(g11, 0, 1, plines = list(col = "red", lwd = 2, lty = 2)) 238s > addline(g11, h = 1, plines.col = "chartreuse4", plines.lwd = 3) 238s > addline(g11, v = c(-1, 1), plines.col = "cadetblue", plines.lwd = 3) 238s > 238s > # on a 1D plot 238s > g12 <- s1d.label(rnorm(10), plot = FALSE) 238s > addline(g12, v = 1, plines.col = "chartreuse4", plines.lwd = 3) 238s > 238s > # on a ADEgS: juxtaposition 238s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 238s > addline(g13, 0, 1, which = 1, plines.col = "red") 238s > addline(g13, 0, 1, which = 2, plines.col = "red") 238s > addline(g13, 0, 1, which = 1:2, plines.col = "red") 238s > addline(g13, 0, 1, plines.col = "red") 238s > addline(g13, h = 1, plines.col = "red") 238s > addline(g13, h = c(1, -1), plines.col = "red") 238s > addline(g13, v = c(-1, 1), plines.col = "red") 238s > addline(g13, v = c(-1, 1), plines.col = 2:3) 239s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1:2, plines.col = "red") 239s > addline(g13, c(0.7, -0.5), c(0.2, -0.4), which = 1, plines.col = "red") 239s > addline(g13, 0.7, 0.2, which = 1, plines.col = "red") 239s > addline(g13, 0.7, -0.5, which = 1, plines.col = "red") 239s > 239s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 239s > fac2 <- factor(xy2$x > 0) 239s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 239s > addline(g9, 1, 0, "A", plines.col = "red", plabels.cex = 2) 239s Warning messages: 239s 1: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 239s NAs introduced by coercion 239s 2: In panel.abline(a = a, b = b, h = h, v = v, lwd = params$lwd, lty = params$lty, : 239s NAs introduced by coercion 239s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col ="red", which = 1:2) 239s > addline(g9, c(-2.1, -1.07), c(2, 1), plines.col = c("green4", "red")) 239s > 239s > # on a ADEgS: facets 239s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 239s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 239s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 239s > addline(g10, 0, c(0.5, -0.5), plines.col = 1:4) 239s > 239s > 239s > ############################## addpoint ############################## 239s > # on a 2D plot 239s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", 239s + paxes.draw = TRUE, plot = FALSE) 239s > addpoint(g11, 2, 2, ppoints.col = "coral", ppoints.pch = "*", ppoints.cex = 4) 240s > addpoint(g11, c(1, 2), c(1, 2), ppoints.col = "brown2") 240s > addpoint(g11, 1, c(1, 2), ppoints.col = "cyan3") 240s > 240s > # on a 1D plot 240s > g12 <- s1d.density(rnorm(1000), paxes.draw = TRUE, plot = FALSE) 240s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 240s > 240s > g12 <- s1d.density(rnorm(1000), plot = FALSE, ylab = "y axis label") 240s > addpoint(g12, 2, 0, ppoints.col = "brown4", ppoints.cex = 3) 240s > 240s > # on a ADEgS: juxtaposition 240s > g13 <- ADEgS(c(g11, g11), plot = FALSE) 240s > addpoint(g13, 2, 2, which = 1, ppoints.col = "cyan3") 240s > addpoint(g13, 2, 2, which = 2, ppoints.col = "cyan3") 240s > addpoint(g13, 2, 2, which = 1:2, ppoints.col = "cyan3") 240s > addpoint(g13, 2, 2, ppoints.col = "cyan3") 240s > addpoint(g13, c(1, 2), 2, ppoints.col = "cyan3") 240s > addpoint(g13, 2, c(1, 2), ppoints.col = "cyan3") 241s > 241s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 241s > fac2 <- factor(xy2$x > 0) 241s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 241s > addpoint(g9, 1, 0, ppoints.col = "red", ppoints.cex = 2) 241s > addpoint(g9, c(1, -1), 0, ppoints.col = "red", ppoints.cex = 2) 241s > addpoint(g9, 0, c(1, -1), ppoints.col = "red", ppoints.cex = 2) 241s > 241s > # on a ADEgS: facets 241s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 241s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 241s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 241s > addpoint(g10, 0, c(0.5, -0.5), ppoints.col = 1:4, ppoints.cex = 3) 241s > 241s > 241s > ############################## addsegment ############################## 241s > # on a 2D plot 241s > g11 <- s.label(cbind(rnorm(100), rnorm(100)), paxes.draw = TRUE, plot = FALSE) 241s > addsegment(g11, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 241s > addsegment(g11, c(0, 1), 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 241s > addsegment(g11, c(0, 1), 2, c(0, 1), -2, plines = list(col = c("cyan3", "brown2"), lwd = 3, lty = 2)) 241s > addsegment(g11, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 241s > addsegment(g11, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 241s > 241s > g12 <- s.label(cbind(rnorm(100), rnorm(100)), ylab = "y axis label", plot = FALSE) 242s > addsegment(g12, 0, 2, 0, -2, plines = list(col = "brown2", lwd = 3, lty = 2)) 242s > addsegment(g12, -2, -2, 2, 2, plines = list(col = "brown2", lwd = 3, lty = 2)) 242s > addsegment(g12, -2, 2, 2, -2, plines = list(col = "cyan3", lwd = 3, lty = 2)) 242s > 242s > # on a 1D plot 242s > g13 <- s1d.density(rnorm(1000), paxes.draw = TRUE, ylab = "ylab", plot = FALSE) 242s > addsegment(g13, 2, 0, 2, 0.2, plines.col = 1, plines.lwd = 3) 242s > 242s > # on a ADEgS: juxtaposition 242s > g14 <- ADEgS(c(g11, g11), plot = FALSE) 242s > addsegment(g14, 1, 2, 1, -2, which = 1, plines.col = "brown2") 242s > addsegment(g14, 1, 2, 1, -2, which = 2, plines.col = "brown2") 242s > addsegment(g14, c(0, 1), 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 242s > addsegment(g14, 1, 2, c(0, 1), -2, which = 1:2, plines.col = "brown2") 242s > addsegment(g14, 1, 2, 1, -2, plines.col = "brown2") 242s > 242s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, 0.5)) 242s > fac2 <- factor(xy2$x > 0) 242s > g9 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, plot = FALSE) 242s > addsegment(g9, 1, 0, 1, 0.5, plines.col = "red", plines.lwd = 2) 242s > addsegment(g9, 1, -1, 0, 1, plines.col = "red", plines.lwd = 2) 243s > addsegment(g9, 0, 1, -1, 1, plines.col = "red", plines.lwd = 2) 243s > 243s > # on a ADEgS: facets 243s > xy <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 243s > posi <- factor(xy$x > 0) : factor(xy$y > 0) 243s > g10 <- s.class(xy, fac = posi, facets = posi, pellipses.col = 1:4, plabels.cex = 0, plegend.drawKey = FALSE, psub.cex = 0, plot = FALSE) 243s > addsegment(g10, c(-0.5, 0.5), c(0.5, -0.5), c(-0.5, 0.5), 1, plines.col = 1:4, plines.lwd = 3) 243s > 243s 243s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 243s Copyright (C) 2024 The R Foundation for Statistical Computing 243s Platform: aarch64-unknown-linux-gnu (64-bit) 243s 243s R is free software and comes with ABSOLUTELY NO WARRANTY. 243s You are welcome to redistribute it under certain conditions. 243s Type 'license()' or 'licence()' for distribution details. 243s 243s R is a collaborative project with many contributors. 243s Type 'contributors()' for more information and 243s 'citation()' on how to cite R or R packages in publications. 243s 243s Type 'demo()' for some demos, 'help()' for on-line help, or 243s 'help.start()' for an HTML browser interface to help. 243s Type 'q()' to quit R. 243s 243s > ## delete/remove this file when 'scatter' functions will be removed in ade4 243s > 243s > library(adegraphics) 244s Registered S3 methods overwritten by 'adegraphics': 244s method from 244s biplot.dudi ade4 244s kplot.foucart ade4 244s kplot.mcoa ade4 244s kplot.mfa ade4 244s kplot.pta ade4 244s kplot.sepan ade4 244s kplot.statis ade4 244s scatter.coa ade4 244s scatter.dudi ade4 244s scatter.nipals ade4 244s scatter.pco ade4 244s score.acm ade4 244s score.mix ade4 244s score.pca ade4 244s screeplot.dudi ade4 244s > pdf("ade4-functions.pdf") 244s > 244s > ##################### scatter.dudi 244s > data(deug, package = "ade4") 244s > dd1 <- ade4::dudi.pca(deug$tab, scannf = FALSE, nf = 4) 244s > scatter(dd1, posieig = "bottomright") 244s > scatter(dd1, posieig = "bottomright", plot = T, prop = TRUE) 245s > scatter(dd1, posieig = "none", plot = T) 245s > scatter(dd1, posieig = "bottomleft", plot = T) 245s > scatter(dd1, posieig = "topright", plot = T) 245s > scatter(dd1, posieig = "topleft", plot = T, eig.col = c("white", "blue", "red")) 246s > 246s > data(rhone, package = "ade4") 246s > dd1 <- ade4::dudi.pca(rhone$tab, nf = 4, scannf = FALSE) 246s > g1 <- scatter(dd1, sub = "Principal component analysis", row = list(plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 246s > g1[2, drop = TRUE] 246s > scatter(dd1, row = list(sub = "Principal component analysis", plabels.optim = TRUE), col.pla.boxes.alpha = 0.5) 246s > scatter(dd1, prop = TRUE, ppoints.cex = 0.2, density.plot = TRUE, row = list(threshold = 0.01)) 247s > 247s > scatter(dd1, posieig = "none") 248s > scatter(dd1, posieig = "bottomright") 248s > scatter(dd1, posieig = c(0.5, 0.5)) 248s > scatter(dd1, posieig = c(0.5, 0.5, 1, 1)) 248s > 248s > 248s > ##################### scatter.coa 248s > data(housetasks, package = "ade4") 248s > par(mfrow = c(2, 2)) 248s > dd2 <- ade4::dudi.coa(housetasks, scan = FALSE) 248s > ade4::scatter(dd2, method = 1, sub = "1 / Standard", posieig = "none") 248s > ade4::scatter(dd2, method = 2, sub = "2 / Columns -> averaging -> Rows", posieig = "none") 249s > ade4::scatter(dd2, method = 3, sub = "3 / Rows -> averaging -> Columns ", posieig = "none") 249s > par(mfrow = c(1, 1)) 249s > 249s > g1 <- scatter(dd2, method = 1, row.sub = "1 / Standard", posieig = "none", plot = FALSE) 249s > g2 <- scatter(dd2, method = 2, col.sub = "2 / Columns -> averaging -> Rows", posieig = "none", plot = FALSE) 249s > g3 <- scatter(dd2, method = 3, row.sub = "3 / Rows -> averaging -> Columns ", posieig = "none", plot = FALSE) 249s > G <- ADEgS(list(g1, g2, g3), layout = c(2, 2), plot = TRUE) 249s > 249s > scatter(dd2, posieig = "none") 249s > scatter(dd2, posieig = "bottomright") 249s > scatter(dd2, posieig = c(0.5, 0.5)) 249s > scatter(dd2, posieig = c(0.5, 0.5, 1, 1)) 249s > 249s > 249s > ##################### scatter.pco 249s > data(yanomama, package = "ade4") 249s > gen <- ade4::quasieuclid(as.dist(yanomama$gen)) 249s > gen1 <- ade4::dudi.pco(gen, scann = FALSE, nf = 3) 249s > scatter(gen1, posieig = "none") 250s > scatter(gen1, posieig = "bottomri") 250s > scatter(gen1, posieig = c(0.5, 0.5)) 250s > scatter(gen1, posieig = c(0.5, 0.5, 1, 1)) 250s > 250s > 250s > ##################### scatter.nipals 250s > data(doubs, package = "ade4") 250s > acp1 <- ade4::dudi.pca(doubs$env, scannf = FALSE, nf = 2) 250s > nip1 <- ade4::nipals(doubs$env) 251s > scatter(nip1, posieig = "none") 251s > scatter(nip1, posieig = "bottomri") 251s > scatter(nip1, posieig = c(0.5, 0.5)) 251s > scatter(nip1, posieig = c(0.5, 0.5, 1, 1)) 251s > 251s > 251s > ##################### score.inertia - plot.inertia 251s > data(housetasks, package = "ade4") 251s > coa2 <- ade4::dudi.coa(housetasks, scann = FALSE) 252s > res21 <- ade4::inertia(coa2, row = TRUE, col = FALSE) 252s > plot(res21, posieig = "none") 252s > plot(res21, posieig = "bottomri") 252s > plot(res21, posieig = c(0.5,0.5)) 252s > plot(res21, posieig = c(0.5, 0.5, 1, 1)) 252s > score(res21, posieig = "none") 252s > score(res21, posieig = "bottomri") 252s > score(res21, posieig = c(0.5, 0.5)) 252s > score(res21, posieig = c(0.5, 0.5, 1, 1)) 252s > 252s > res22 <- ade4::inertia(coa2, row = FALSE, col = TRUE) 252s > plot(res22, posieig = "none") 253s > plot(res22, posieig = "bottomri") 253s > plot(res22, posieig = c(0.5, 0.5)) 253s > plot(res22, posieig = c(0.5, 0.5, 1, 1)) 253s > score(res22, posieig = "none") 253s > score(res22, posieig = "bottomri") 253s > score(res22, posieig = c(0.5, 0.5)) 253s > score(res22, posieig = c(0.5, 0.5, 1, 1)) 253s > 253s > res23 <- ade4::inertia(coa2, row = TRUE, col = TRUE) 253s > plot(res23, posieig = "none") 254s > plot(res23, posieig = "bottomri") 254s > plot(res23, posieig = c(0.5, 0.5)) 254s > plot(res23, posieig = c(0.5, 0.5, 1, 1)) 254s > score(res23, posieig = "none") 254s > score(res23, posieig = "bottomri") 254s > score(res23, posieig = c(0.5, 0.5)) 255s > score(res23, posieig = c(0.5, 0.5, 2, 2)) 255s > 255s > 255s > ##################### plot.acm 255s > data(lascaux, package = "ade4") 255s > 255s > acm1 <- ade4::dudi.acm(lascaux$ornem, sca = FALSE) 255s > p1 <- proc.time() 255s > ade4::scatter(acm1) 255s > Tade4 <- proc.time() - p1 255s > 255s > p2 <- proc.time() 255s > plot(acm1, ppoints.cex = 0.3, plot = T) 256s > Tadegraphics <- proc.time() - p2 256s > ## faster calculus, longest display than for ade4 256s > 256s > 256s > ##################### plot.fca 256s > data(coleo, package = "ade4") 256s > coleo.fuzzy <- ade4::prep.fuzzy.var(coleo$tab, coleo$col.blocks) 256s 2 missing data found in block 1 256s 1 missing data found in block 3 256s 2 missing data found in block 4 256s > 256s > fca1 <- ade4::dudi.fca(coleo.fuzzy, scannf = FALSE, nf = 3) 256s > ade4::scatter(fca1) 256s > plot(fca1) 257s > 257s 257s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 257s Copyright (C) 2024 The R Foundation for Statistical Computing 257s Platform: aarch64-unknown-linux-gnu (64-bit) 257s 257s R is free software and comes with ABSOLUTELY NO WARRANTY. 257s You are welcome to redistribute it under certain conditions. 257s Type 'license()' or 'licence()' for distribution details. 257s 257s R is a collaborative project with many contributors. 257s Type 'contributors()' for more information and 257s 'citation()' on how to cite R or R packages in publications. 257s 257s Type 'demo()' for some demos, 'help()' for on-line help, or 257s 'help.start()' for an HTML browser interface to help. 257s Type 'q()' to quit R. 257s 257s > library(adegraphics) 258s Registered S3 methods overwritten by 'adegraphics': 258s method from 258s biplot.dudi ade4 258s kplot.foucart ade4 258s kplot.mcoa ade4 258s kplot.mfa ade4 258s kplot.pta ade4 258s kplot.sepan ade4 258s kplot.statis ade4 258s scatter.coa ade4 258s scatter.dudi ade4 258s scatter.nipals ade4 258s scatter.pco ade4 258s score.acm ade4 258s score.mix ade4 258s score.pca ade4 258s screeplot.dudi ade4 258s > pdf("adegraphics.pdf") 258s > 258s > xy <- cbind.data.frame(runif(7), runif(7)) 258s > g1 <- s.label(xy) 258s > 258s > data(olympic, package = "ade4") 258s > pca <- ade4::dudi.pca(olympic$tab, scan = FALSE) 258s > g2 <- s.corcircle(pca$co, lab = names(olympic$tab)) 258s > 258s > g3 <- ADEgS(list(g1, g2), rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 258s > g4 <- ADEgS(list(g1, g2), layout = c(1, 2)) ## the same as g3 258s > g4b <- ADEgS(list(g1, g2)) ## the same as g3 258s > g5 <- s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red") 258s > 258s > g6 <- superpose(g1, g5, plot = TRUE) 259s > g6b <- s.density(xy) 259s > g7 <- superpose(s.density(xy), g5, plot = TRUE) 260s > 260s > g8 <- superpose(s.label(xy, plabels.boxes.col = "orange", plot = FALSE), 260s + s.label(xy, plabels.cex = 0, paxes.draw = TRUE, ppoints.col = "red", plot = FALSE), 260s + plot = TRUE) 260s > 260s > g9 <- g8[1, drop = TRUE] 260s > class(g9) 260s [1] "S2.label" 260s attr(,"package") 260s [1] "adegraphics" 260s > g10 <- g8[1, drop = FALSE] 260s > class(g10) 260s [1] "ADEgS" 260s attr(,"package") 260s [1] "adegraphics" 260s > 260s > g11 <- ADEgS(list(g8, g3), positions = rbind(c(0, 0, 0.5, 1), c(0.5, 0, 1, 1))) 260s > 260s > ## cbindADEgS - rbindADEgS 260s > g12 <- cbindADEg(g1, g2, plot = TRUE) ## the same as g3 260s > g13 <- cbindADEg(g8, g3, plot = TRUE) ## the same as g11 260s > g14 <- rbindADEg(g8, g3, plot = TRUE) 260s > 260s > data(banque, package = "ade4") 260s > banque.acm <- ade4::dudi.acm(banque, scann = FALSE, nf = 3) 260s > g15 <- score(banque.acm, which = which(banque.acm$cr[, 1] > 0.2), plot = FALSE) 261s > g15 <- g15[[1]] 261s > cbindADEg(g15[[1]], g15[[2]], plot = TRUE) ## work on trellis object 261s > 261s > 261s 261s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 261s Copyright (C) 2024 The R Foundation for Statistical Computing 261s Platform: aarch64-unknown-linux-gnu (64-bit) 261s 261s R is free software and comes with ABSOLUTELY NO WARRANTY. 261s You are welcome to redistribute it under certain conditions. 261s Type 'license()' or 'licence()' for distribution details. 261s 261s R is a collaborative project with many contributors. 261s Type 'contributors()' for more information and 261s 'citation()' on how to cite R or R packages in publications. 261s 261s Type 'demo()' for some demos, 'help()' for on-line help, or 261s 'help.start()' for an HTML browser interface to help. 261s Type 'q()' to quit R. 261s 261s > library(ade4) 261s > library(adegraphics) 261s Registered S3 methods overwritten by 'adegraphics': 261s method from 261s biplot.dudi ade4 261s kplot.foucart ade4 261s kplot.mcoa ade4 261s kplot.mfa ade4 261s kplot.pta ade4 261s kplot.sepan ade4 261s kplot.statis ade4 261s scatter.coa ade4 261s scatter.dudi ade4 261s scatter.nipals ade4 261s scatter.pco ade4 261s score.acm ade4 261s score.mix ade4 261s score.pca ade4 261s screeplot.dudi ade4 262s 262s Attaching package: 'adegraphics' 262s 262s > library(sp) 262s The following objects are masked from 'package:ade4': 262s 262s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 262s s.label, s.logo, s.match, s.traject, s.value, table.value, 262s triangle.class 262s 262s > library(lattice) 262s > 262s > pdf("nbgraph.pdf") 262s > 262s > if(require(spdep)) { 262s + data(elec88, package = "ade4") 262s + coords <- sp::coordinates(elec88$Spatial) 262s + 262s + xyplot(coords[, 2] ~ coords[, 1], 262s + panel = function(...) {adeg.panel.nb(elec88$nb, coords)}) 262s + 262s + g1 <- s.label(coords, nb = elec88$nb, porigin.include = F, plabels.cex = 0.7, 262s + ppoints.cex = 2, Sp = elec88$Spatial, pSp.col = "red", pSp.alpha = 0.5) 262s + } 262s Loading required package: spdep 262s Loading required package: spData 262s To access larger datasets in this package, install the spDataLarge 262s package with: `install.packages('spDataLarge', 262s repos='https://nowosad.github.io/drat/', type='source')` 262s Loading required package: sf 263s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE 264s 264s Attaching package: 'spdep' 264s 264s The following object is masked from 'package:ade4': 264s 264s mstree 264s 264s > 264s 264s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 264s Copyright (C) 2024 The R Foundation for Statistical Computing 264s Platform: aarch64-unknown-linux-gnu (64-bit) 264s 264s R is free software and comes with ABSOLUTELY NO WARRANTY. 264s You are welcome to redistribute it under certain conditions. 264s Type 'license()' or 'licence()' for distribution details. 264s 264s R is a collaborative project with many contributors. 264s Type 'contributors()' for more information and 264s 'citation()' on how to cite R or R packages in publications. 264s 264s Type 'demo()' for some demos, 'help()' for on-line help, or 264s 'help.start()' for an HTML browser interface to help. 264s Type 'q()' to quit R. 264s 264s > library(ade4) 264s > library(adegraphics) 265s Registered S3 methods overwritten by 'adegraphics': 265s method from 265s biplot.dudi ade4 265s kplot.foucart ade4 265s kplot.mcoa ade4 265s kplot.mfa ade4 265s kplot.pta ade4 265s kplot.sepan ade4 265s kplot.statis ade4 265s scatter.coa ade4 265s scatter.dudi ade4 265s scatter.nipals ade4 265s scatter.pco ade4 265s score.acm ade4 265s score.mix ade4 265s score.pca ade4 265s screeplot.dudi ade4 265s 265s Attaching package: 'adegraphics' 265s 265s > library(sp) 265s The following objects are masked from 'package:ade4': 265s 265s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 265s s.label, s.logo, s.match, s.traject, s.value, table.value, 265s triangle.class 265s 265s > pdf("panelSpatial.pdf") 265s > 265s > ## ex1 265s > data(mafragh, package = "ade4") 265s > dfxy1 <- coordinates(mafragh$Spatial) 265s > g1 <- s.label(dfxy1, Sp = mafragh$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(97), pgrid.draw = FALSE, plabels.cex = 0) 265s > 265s > 265s > ## ex2 265s > data(meuse, package = "sp") 265s > coordinates(meuse) <- ~ x + y 265s > data(meuse.grid, package = "sp") 265s > m <- SpatialPixelsDataFrame(points = meuse.grid[c("x", "y")], data = meuse.grid) 266s > data(meuse.riv) 266s > meuse.sr <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)), "meuse.riv"))) 266s > 266s > scale1 <- list("SpatialPolygonsRescale", offset = c(179900, 329600), scale = 500, fill = c("transparent", "black"), layout.scale.bar()) 266s > text11 <- list("sp.text", c(179900, 329700), "0") 266s > text21 <- list("sp.text", c(180400, 329700), "500 m") 266s > arrow1 <- list("SpatialPolygonsRescale", offset = c(178750, 332500), scale = 400, layout.north.arrow()) 266s > river <- list("sp.polygons", meuse.sr, fill = "lightblue") 266s > dfxy2 <- as.data.frame(coordinates(meuse)) 266s > g2 <- s.value(dfxy2, z = meuse[, 1]$cadmium, sp.layout = list(scale1, text11, text21, arrow1, river), Sp = m) 266s > 266s > fac <- meuse@data$ffreq 266s > levels(fac)[1] <- "1 in 2 years" 266s > levels(fac)[2] <- "1 in 10 years" 266s > levels(fac)[3] <- "1 in 50 years" 266s > arrow2 <- list("SpatialPolygonsRescale", layout.north.arrow(), offset = c(181750, 330000), scale = 400) 266s > scale2 <- list("SpatialPolygonsRescale", layout.scale.bar(), offset = c(178050, 333600), scale = 500, fill = c("transparent", "black")) 266s > text12 <- list("sp.text", c(178050, 333700), "0") 266s > text22 <- list("sp.text", c(178550, 333700), "500 m") 266s > g3 <- s.class(dfxy2, fac = fac, sp.layout = list(scale2, text12, text22, arrow2, river), starSize = 1, col = c(1, 2, 4), pellipses.col = c(1, 2, 4), 266s + pellipses.alpha = 0.7, plines.lty = 3, psub.text = "Flooding frequency \n near the Meuse river", psub.pos = c(0.2, 0.88), pgrid.text.cex = 0, 266s + porigin.include = FALSE, Sp = meuse.sr) 266s > 266s > ## ex3 266s > # if(require(Guerry)) { 266s > # data(gfrance85) 266s > # 266s > # dfxy4 <- coordinates(gfrance85) 266s > # region.names <- data.frame(gfrance85)[, 5] 266s > # col.region <- colors()[c(149, 254, 468, 552, 26)] 266s > # g4 <- s.class(dfxy4, region.names, ellip = 0, star = 0, col = col.region, Sp = gfrance85, pSp.col = col.region[region.names], porig.inclu = F) 266s > # } 266s > 266s > ## ex4 266s > library(sp) 266s > library(lattice) 266s > 266s > data(elec88, package = "ade4") 266s > sp <- elec88$Spatial 266s > 266s > g5 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "black")}) 266s > g6 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(sp, col = 1:14, border = "black")}) 266s > g7 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], aspect = "iso", panel = function(...) {sp.polygons(sp, col = "black", fill = 1:5)}) 266s > g8 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 266s > g9 <- xyplot(1 ~ 1, xlim = bbox(sp)[1, ], ylim = bbox(sp)[2, ], panel = function(...) {adeg.panel.Spatial(SpObject = sp, col = "black", border = "blue")}) 266s > #g10 <- s.label(cbind(-80, 35), Sp = nc) 266s > #g11 <- s.label(cbind(-80, 35), Sp = sp) 266s > 266s > 266s > ## ex5 266s > data(jv73, package = "ade4") 266s > g12 <- s.label(jv73$xy, Sp = jv73$Spatial) 267s > g13 <- s.label(jv73$xy, Sp = jv73$Spatial, pSp.col = "red") 267s > 267s > spoints <- SpatialPoints(jv73$xy) 267s > g14 <- s.label(jv73$xy, Sp = spoints, plab.cex = 0, ppoin.cex = 0, pSp.col = 1) 267s > 267s > sgrid <- SpatialGrid(GridTopology(c(0, 0), c(1, 1), c(3, 5))) 267s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(sgrid, col = 1:2)) 267s > 267s > nc <- SpatialGridDataFrame(getGridTopology(sgrid), data = data.frame(matrix(1:15, ncol = 1))) 267s > xyplot(0:5 ~ 0:3, panel = function(...) sp.grid(nc, col = 1, at = pretty(rnorm(15), 2), col.region = 2:3)) 267s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:3)) 267s > xyplot(0:5 ~ 0:3, panel = function(...) adeg.panel.Spatial(nc, col = 1:2)) 267s > 267s > 267s > ## ex6 267s > mysp <- SpatialPointsDataFrame(matrix(rnorm(20), 10), data.frame(matrix(rnorm(20), 10))) 267s > s.Spatial(mysp) 267s > s.Spatial(mysp, col = c("red", "blue")) 267s > s.Spatial(mysp, ppoints.cex = 2) 267s > s.Spatial(mysp, ppoints.alpha = 0.5) 267s > s.Spatial(mysp, symbol = "circle") 267s > s.Spatial(mysp, method = "color", ppalette.quanti = colorRampPalette(c("red", "white", "blue"))) 267s > 268s 268s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 268s Copyright (C) 2024 The R Foundation for Statistical Computing 268s Platform: aarch64-unknown-linux-gnu (64-bit) 268s 268s R is free software and comes with ABSOLUTELY NO WARRANTY. 268s You are welcome to redistribute it under certain conditions. 268s Type 'license()' or 'licence()' for distribution details. 268s 268s R is a collaborative project with many contributors. 268s Type 'contributors()' for more information and 268s 'citation()' on how to cite R or R packages in publications. 268s 268s Type 'demo()' for some demos, 'help()' for on-line help, or 268s 'help.start()' for an HTML browser interface to help. 268s Type 'q()' to quit R. 268s 268s > library(ade4) 268s > library(adegraphics) 268s Registered S3 methods overwritten by 'adegraphics': 268s method from 268s biplot.dudi ade4 268s kplot.foucart ade4 268s kplot.mcoa ade4 268s kplot.mfa ade4 268s kplot.pta ade4 268s kplot.sepan ade4 268s kplot.statis ade4 268s scatter.coa ade4 268s scatter.dudi ade4 268s scatter.nipals ade4 268s scatter.pco ade4 268s score.acm ade4 268s score.mix ade4 268s score.pca ade4 268s screeplot.dudi ade4 268s 268s Attaching package: 'adegraphics' 268s 268s The following objects are masked from 'package:ade4': 268s 268s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 268s s.label, s.logo, s.match, s.traject, s.value, table.value, 268s triangle.class 268s 268s > pdf("parameter.pdf") 268s > 268s > adegparold <- adegpar() 268s > b1 <- length(adegraphics:::separation(plines = list(col = "blue"), plab.bo.dra = FALSE, plab = list(orien = F))$rest) == 0 268s > b2 <- length(adegraphics:::separation(plines = list(col = "blue", lwd = c(1:5)), parr.end = NA, plab.boxes.dr = FALSE)$rest) == 0 268s > b3 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 1)$rest) == 2 268s > b4 <- length(adegraphics:::separation(plot.li = list(col = "blue", lwd = c(1:5)), par.end = NA, pl.boxes.draw = FALSE, pattern = 0)$rest) == 2 268s > b5 <- length(adegraphics:::separation()) == 2 268s > b6 <- length(adegraphics:::separation(par.sub.text = list("lineheight" = 5), pattern = 1)$rest) == 0 268s > b7 <- names(adegraphics:::separation(toto = "rienavoir!")$rest) == "toto" 268s > b8 <- names(adegraphics:::separation(toto = "rienavoir!", pattern = 1)$rest) == "toto" 268s > 268s > l1 <- list(parrow = list(col = "blue", lwd = c(1:5), end = NA), plboxes.draw = FALSE, pattern = 1) 268s > sep1 <- adegraphics:::separation(l1) ## no recognition of "pattern" in a list 268s > 268s > l2 <- list("parrow.lwd", "plboxes.draw") 268s > sep2 <- adegraphics:::separation(l2) 268s > 268s > sep3 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col")) 268s > sep4 <- adegraphics:::separation("plboxes" = list("draw" = FALSE, "col" = 2)) 268s > sep5 <- adegraphics:::separation(pla.box = list(col = 1:5)) 268s > sep6 <- adegraphics:::separation(pla.box.col = c(1:5)) 268s > sep7 <- adegraphics:::separation(pla = list(box.col = 1:5)) ## don't match 268s > 268s > 268s > ## adegpar test 268s > ad1 <- adegpar() 268s > ad2 <- adegpar("paxes.draw") 268s > ad3 <- adegpar("paxes.draw", "psub.cex") 268s > 268s > ad4 <- adegpar("psub.cex" = 5) 268s > ad5 <- adegpar("psub.cex" = 5, paxes.draw = FALSE) 268s > ad6 <- adegpar("psub") 268s > ad7 <- adegpar("psub.cex", "plabe.boxes") 268s > 268s > ad8 <- adegpar(ppoints = list(col = "yellow"), pgrid.space = 4, plines = list(lwd = c(1:5))) 268s > ad9 <- adegpar(ppoints = list(col = "red"), pgrid = list(nint = 12), plines = list(lwd = c(1:5))) 268s > ad10 <- adegpar("ppoints.col", "pgrid.nint", "plines") 268s > 268s > ad11 <- adegpar(paxes = list("x"), pgrid = list("nint", "col")) 268s > ad12 <- adegpar(list(pellip = list(col = "red"), grid.nint = 8, plines = list(lwd = c(1:5)))) 268s > ad13 <- adegpar(paxes = list("x"), pgrid = list("nint", "col"), "plines", "pellipse") 268s > 268s > ad14 <- adegpar(plegend.drawKey = FALSE) 268s > ad15 <- adegpar(list(paxes = list(col = "white"), pgrid.nint = 6, plines = list(lwd = c(1:5)))) 268s > ad16 <- adegpar(paxes = list(x = list(draw = TRUE))) 268s > 268s > adegpar(adegparold) 268s > 268s > ## merging list 268s > l3 <- list(plabels = list(boxes = list(col = "white", alpha = 1)), plabels = list(cex = 2), plabels = list(col = "red")) 268s > adegraphics:::.mergingList(l3) 268s $plabels 268s $plabels$boxes 268s $plabels$boxes$col 268s [1] "white" 268s 268s $plabels$boxes$alpha 268s [1] 1 268s 268s 268s $plabels$cex 268s [1] 2 268s 268s $plabels$col 268s [1] "red" 268s 268s 268s > adegraphics:::.mergingList(list(plabels = list(cex = 3))) 268s $plabels 268s $plabels$cex 268s [1] 3 268s 268s 268s > 268s > 268s > ## update parameters in graphics 268s > cha <- rep(LETTERS, length.out = 100) 268s > xy <- cbind.data.frame(runif(length(cha)), runif(length(cha))) 268s > g1 <- s.label(xy, labels = cha, paxes.draw = TRUE, plabels.cex = runif(length(cha), 0.5, 1.5)) 269s > update(g1, paxes = list(aspect = "fill", draw = TRUE, x = list(draw = FALSE)), 269s + pgrid = list(col = "black", lwd = 2, lty = 5), 269s + plabels = list(col = 1:4, alpha = 0.5, cex = 2, boxes = list(border = "blue", col = "antiquewhite", alpha = 0.2, lwd = 2.5, lty = 5))) 269s > 269s > g2 <- s.label(xy, labels = cha) 269s > update(g2, paxes.draw = FALSE, pgrid = list(col = "blue", lwd = 2, lty = 5, text = list(pos = "bottomright", cex = 2, col = "green"))) 269s > update(g2, porigin = list(alpha = 0.5, col = "red", lty = 5 , lwd = 2, origin = c(0.6, 0.1)), pgrid.lwd = 0.5) 269s > update(g2, psub = list(text = "parameters", cex = 2, col = "red", position = "topright")) 269s > update(g2, plabels.cex = 0, ppoints = list(alpha = 0.4, cex = 2, col = "red", fill = "blue", pch = 21)) 269s > 269s > 269s > ## from tdr641 269s > data(doubs, package = "ade4") 269s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scannf = F, nf = 3) 269s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scannf = F, nf = 2) 269s > coin1 <- ade4::coinertia(dudi1, dudi2, scannf = F, nf = 2) 269s > g3 <- s.arrow(coin1$l1, plabels.cex = .87) 269s > update(g3, plines = list(col = "blue", lwd = 2, lty = 3), parr.end = "both", parr = list(angle = 25, length = 0.5)) 270s > 270s > ## with spatial object 270s > data(elec88, package = "ade4") 270s > g4 <- s.label(elec88$xy, label = as.character(1:nrow(elec88$xy)), porigin.include = FALSE, Sp = elec88$Spatial, pSp.col = colorRampPalette(c("yellow", "blue"))(5), pgrid.draw = TRUE) 270s > update(g4, pSp = list(col = "yellow", border = "blue", lwd = 2, lty = 5, alpha = 0.01)) ## don't match : to solve 271s > 271s > ## plabels parameter 271s > data(tortues, package = "ade4") 271s > pturtles <- tortues 271s > names(pturtles) <- c("length", "width", "height", "sex") 271s > sex <- pturtles$sex 271s > sexcol <- ifelse(sex == "M", "blue", "red") 271s > measures <- pturtles[, 1:3] 271s > pca1 <- ade4::dudi.pca(measures, scann = FALSE, nf = 3) 271s > g5 <- scatter(pca1, row.plabel.cex = 0, col.plabel.cex = c(1, 2, 3), posieig = "none", col.plabel.col = c("red", "blue", "green")) 271s > 271s 271s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 271s Copyright (C) 2024 The R Foundation for Statistical Computing 271s Platform: aarch64-unknown-linux-gnu (64-bit) 271s 271s R is free software and comes with ABSOLUTELY NO WARRANTY. 271s You are welcome to redistribute it under certain conditions. 271s Type 'license()' or 'licence()' for distribution details. 271s 271s R is a collaborative project with many contributors. 271s Type 'contributors()' for more information and 271s 'citation()' on how to cite R or R packages in publications. 271s 271s Type 'demo()' for some demos, 'help()' for on-line help, or 271s 'help.start()' for an HTML browser interface to help. 271s Type 'q()' to quit R. 271s 271s > library(adegraphics) 271s Registered S3 methods overwritten by 'adegraphics': 271s method from 271s biplot.dudi ade4 271s kplot.foucart ade4 271s kplot.mcoa ade4 271s kplot.mfa ade4 271s kplot.pta ade4 271s kplot.sepan ade4 271s kplot.statis ade4 271s scatter.coa ade4 271s scatter.dudi ade4 271s scatter.nipals ade4 271s scatter.pco ade4 271s score.acm ade4 271s score.mix ade4 271s score.pca ade4 271s screeplot.dudi ade4 271s > pdf("s.arrow.pdf") 271s > 271s > ## ex1 : from tdr641 271s > data(doubs, package = "ade4") 271s > dudi1 <- ade4::dudi.pca(doubs$env, scale = T, scan = F, nf = 3) 271s > dudi2 <- ade4::dudi.pca(doubs$fish, scale = T, scan = F, nf = 2) 271s > coin1 <- ade4::coinertia(dudi1, dudi2, scan = F, nf = 2) 271s > g1 <- s.arrow(coin1$l1, plabels.cex = 0.87) 272s > g2 <- s.arrow(coin1$c1, plabels.cex = 1) 272s > 272s > ## ex2 : from bs81 272s > data(granulo, package = "ade4") 272s > w <- data.frame(t(apply(granulo$tab, 1, function(x) x / sum(x)))) 272s > g3 <- s.arrow(ade4::dudi.pca(data.frame(w), scan = F, nf = 2)$co) 272s > 272s > wtr <- data.frame(t(w)) 272s > wmoy <- data.frame(matrix(apply(wtr, 1, mean), 1)) 272s > dudi3 <- ade4::dudi.pca(w, scal = FALSE, scan = FALSE) 272s > wmoy <- ade4::suprow(dudi3, wmoy)$lisup 272s > 272s > g4 <- s.arrow(dudi3$c1, plabels.cex = 1.5) 272s > g4 <- s.distri(dudi3$c1, wtr, starSize = 0.33, ellipseSize = 0, add = TRUE, plabels.cex = 1) 272s > g4 <- s.label(wmoy, ppoint.cex = 5, plabels.cex = 0, add = TRUE) 272s > 272s > ## ex3 272s > data(deug, package = "ade4") 272s > pca1 <- ade4::dudi.pca(deug$tab, scal = FALSE, center = deug$cent, scan = FALSE) 272s > g5 <- s.arrow(40 * pca1$c1) 272s > 272s > ## ex4 272s > xy <- cbind(rnorm(50), rnorm(50)) 272s > g6 <- s.arrow(xy, plabels.cex = 0.9, parrows = list(angle = 20)) 272s > 272s 272s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 272s Copyright (C) 2024 The R Foundation for Statistical Computing 272s Platform: aarch64-unknown-linux-gnu (64-bit) 272s 272s R is free software and comes with ABSOLUTELY NO WARRANTY. 272s You are welcome to redistribute it under certain conditions. 272s Type 'license()' or 'licence()' for distribution details. 272s 272s R is a collaborative project with many contributors. 272s Type 'contributors()' for more information and 272s 'citation()' on how to cite R or R packages in publications. 272s 272s Type 'demo()' for some demos, 'help()' for on-line help, or 272s 'help.start()' for an HTML browser interface to help. 272s Type 'q()' to quit R. 272s 272s > library(adegraphics) 273s Registered S3 methods overwritten by 'adegraphics': 273s method from 273s biplot.dudi ade4 273s kplot.foucart ade4 273s kplot.mcoa ade4 273s kplot.mfa ade4 273s kplot.pta ade4 273s kplot.sepan ade4 273s kplot.statis ade4 273s scatter.coa ade4 273s scatter.dudi ade4 273s scatter.nipals ade4 273s scatter.pco ade4 273s score.acm ade4 273s score.mix ade4 273s score.pca ade4 273s screeplot.dudi ade4 273s > pdf("s.class.pdf") 273s > 273s > xy0 <- cbind.data.frame(x = runif(20, -1, 1), y = runif(20, -1, 6)) 273s > basic <- s.class(xy0, fac = factor(rep(c("A", "B"), le = 20)), chull = 0, star = 0) 273s > 273s > xy1 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 6)) 273s > fac1 <- factor(xy1$x > 0) : factor(xy1$y > 0) 273s > g1 <- s.class(xy1, fac = fac1, storeData = F, col = 1:4, pbackground.box = T, pbackground.col = grey(0.85), paxes.draw = T, ell = 0) 273s > 273s > ## multiaxis 273s > xy2 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -2, 2), y2 = runif(200, -0.5, .5)) 273s > fac2 <- factor(xy2$x > 0) 273s > g2 <- s.class(xy2, fac = fac2, xax = 1, yax = 2:3, storeData = F, plot = F) 273s > print(g2) 273s > 273s > ## insertion 273s > print(ADEgS(list(g1, g2), posi = rbind(c(0, 0, 1, 1), c(0.7, 0.5, 1, 0.9)))) 274s > 274s > ## color test 274s > g3 <- s.class(xy1, fac = fac2, psub.text = "Graphic 3", "ppoints.col" = 1:5, plabels.boxes = list(col = "white", alpha = 0.8), pellipses.col = 1:5, col = 1:5) 274s > 274s > ## test convex hull and parameters 274s > xy4 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 274s > fac4 <- factor(xy4$x > 0) : factor(xy4$y > 0) 274s > col <- c("black", "red", "green", "blue") 274s > g4 <- s.class(xy4, fac4, ppoints.cex = 1.5, chull = T, ellipseSize = 0, starSize = 0, ppolygon = list(border = 4:1, col = 1:4, lty = 1:4, lwd = 2, alpha = 0.4)) 274s > 274s > 274s 274s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 274s Copyright (C) 2024 The R Foundation for Statistical Computing 274s Platform: aarch64-unknown-linux-gnu (64-bit) 274s 274s R is free software and comes with ABSOLUTELY NO WARRANTY. 274s You are welcome to redistribute it under certain conditions. 274s Type 'license()' or 'licence()' for distribution details. 274s 274s R is a collaborative project with many contributors. 274s Type 'contributors()' for more information and 274s 'citation()' on how to cite R or R packages in publications. 274s 274s Type 'demo()' for some demos, 'help()' for on-line help, or 274s 'help.start()' for an HTML browser interface to help. 274s Type 'q()' to quit R. 274s 274s > library(adegraphics) 274s Registered S3 methods overwritten by 'adegraphics': 274s method from 274s biplot.dudi ade4 274s kplot.foucart ade4 274s kplot.mcoa ade4 274s kplot.mfa ade4 274s kplot.pta ade4 274s kplot.sepan ade4 274s kplot.statis ade4 274s scatter.coa ade4 274s scatter.dudi ade4 274s scatter.nipals ade4 274s scatter.pco ade4 274s score.acm ade4 274s score.mix ade4 274s score.pca ade4 274s screeplot.dudi ade4 274s > pdf("s.corcircle.pdf") 274s > data(olympic, package = "ade4") 274s > 274s > dudi1 <- ade4::dudi.pca(olympic$tab, scan = FALSE) # a normed PCA 274s > g1 <- s.corcircle(dudi1$co, lab = names(olympic$tab)) 275s > 275s > g2 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = T) 275s > g3 <- s.corcircle(dudi1$co, lab = names(olympic$tab), fullcircle = FALSE) 275s > g4 <- s.corcircle(dudi1$co, lab = names(olympic$tab), pback.col = "red", pbackground.box = FALSE) 275s > 275s 275s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 275s Copyright (C) 2024 The R Foundation for Statistical Computing 275s Platform: aarch64-unknown-linux-gnu (64-bit) 275s 275s R is free software and comes with ABSOLUTELY NO WARRANTY. 275s You are welcome to redistribute it under certain conditions. 275s Type 'license()' or 'licence()' for distribution details. 275s 275s R is a collaborative project with many contributors. 275s Type 'contributors()' for more information and 275s 'citation()' on how to cite R or R packages in publications. 275s 275s Type 'demo()' for some demos, 'help()' for on-line help, or 275s 'help.start()' for an HTML browser interface to help. 275s Type 'q()' to quit R. 275s 275s > library(adegraphics) 275s Registered S3 methods overwritten by 'adegraphics': 275s method from 275s biplot.dudi ade4 275s kplot.foucart ade4 275s kplot.mcoa ade4 275s kplot.mfa ade4 275s kplot.pta ade4 275s kplot.sepan ade4 275s kplot.statis ade4 275s scatter.coa ade4 275s scatter.dudi ade4 275s scatter.nipals ade4 275s scatter.pco ade4 275s score.acm ade4 275s score.mix ade4 275s score.pca ade4 275s screeplot.dudi ade4 275s > pdf("s.density.pdf") 275s > 275s > xx1 <- rnorm(1000, 1, 2) 275s > yy1 <- rnorm(1000, 1, 2) 275s > 275s > g1 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(40, 40)) 276s > g2 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(80, 80), col = colorRampPalette(c("red", "blue"))(58), storeData = FALSE, region = TRUE) 276s > g3 <- s.density(cbind(yy1 + 3, xx1 + 3), gridsize = c(400, 400)) 276s > g4 <- s.density(cbind(xx1, yy1), paxes.draw = T, gridsize = c(200, 200), add = TRUE) 276s > g5 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(200, 200), region = TRUE, contour = TRUE, plabels.cex = 1, plabels.srt = "vertial") 276s > g6 <- s.density(cbind(rnorm(300, 3, 0.3), rnorm(300, -2, 0.5)), gridsize = c(500, 500), thres = 0.01, nr = 10, regions = list(alpha = 0.5), col = colorRampPalette(c("red", "blue"))(108)) 278s > g7 <- s.density(cbind(c(rnorm(50000, 1, 1), rnorm(50000, -1, 1)), c(rnorm(50000, -1, 0.5), rnorm(50000, 1, 0.5))), paxes.draw = T, gridsize = c(100, 100), region = TRUE, contour = TRUE, plabels.cex = 1, nclass = 5) 278s > 278s 278s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 278s Copyright (C) 2024 The R Foundation for Statistical Computing 278s Platform: aarch64-unknown-linux-gnu (64-bit) 278s 278s R is free software and comes with ABSOLUTELY NO WARRANTY. 278s You are welcome to redistribute it under certain conditions. 278s Type 'license()' or 'licence()' for distribution details. 278s 278s R is a collaborative project with many contributors. 278s Type 'contributors()' for more information and 278s 'citation()' on how to cite R or R packages in publications. 278s 278s Type 'demo()' for some demos, 'help()' for on-line help, or 278s 'help.start()' for an HTML browser interface to help. 278s Type 'q()' to quit R. 278s 278s > library(adegraphics) 279s Registered S3 methods overwritten by 'adegraphics': 279s method from 279s biplot.dudi ade4 279s kplot.foucart ade4 279s kplot.mcoa ade4 279s kplot.mfa ade4 279s kplot.pta ade4 279s kplot.sepan ade4 279s kplot.statis ade4 279s scatter.coa ade4 279s scatter.dudi ade4 279s scatter.nipals ade4 279s scatter.pco ade4 279s score.acm ade4 279s score.mix ade4 279s score.pca ade4 279s screeplot.dudi ade4 279s > pdf("s.distri.pdf") 279s > 279s > xy5 <- cbind.data.frame(x = runif(200, -1, 1), y = runif(200, -1, 1)) 279s > w1 <- as.numeric((xy5$x > 0) & (xy5$y > 0)) 279s > w2 <- ((xy5$x > 0) & (xy5$y < 0)) * (1 - xy5$y) * xy5$x 279s > w3 <- ((xy5$x < 0) & (xy5$y > 0)) * (1 - xy5$x) * xy5$y 279s > w4 <- ((xy5$x < 0) & (xy5$y < 0)) * xy5$y * xy5$x 279s > distri <- data.frame(a = w1 / sum(w1), b = w2 / sum(w2), c = w3 / sum(w3), d = w4 / sum(w4)) 279s > g5 <- s.distri(xy5, distri, plabels.boxes = list(col = "white", alpha = 1), plabels.cex = 2, plabels.col = 1:5) 279s > 279s > data(rpjdl, package = "ade4") 279s > xy6 <- ade4::dudi.coa(rpjdl$fau, scan = FALSE)$li + 3 279s > g6 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1))) 279s > g7 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin = list(include = FALSE), pellipses.axes.col = "blue") 279s > 279s > ## test add 279s > g8 <- s.distri(xy6, rpjdl$fau[, 5], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "blue")) 279s > g9 <- s.distri(xy6, rpjdl$fau[, 12], ellipseSize = 1.5, psub = list(text = rpjdl$frlab[5], cex = 2, pos = c(0.2, 0.1)), porigin.include = FALSE, pellipses = list(col = "red"), add = TRUE) 279s > show(g9) ## g8 is a superposition, an ADEgS object 279s > 279s > ## add 279s > index <- c(1, 5, 8, 20, 21, 23, 26, 33, 36, 44, 47, 49) 279s > col <- colorRampPalette(c("blue", "red", "orange"))(49) 279s > s.distri(xy6, rpjdl$fau[, 1], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[1], alpha = 0.3)) 279s > for(i in index[-1]) 279s + s.distri(xy6, rpjdl$fau[, i], ellipseSize = 1, starSize = 0, porigin.include = FALSE, pellipses = list(col = col[i], alpha = 0.3), add = TRUE) 280s > 280s > current <- get("currentadeg", env = adegraphics:::.ADEgEnv) 280s > print(current[[6]]) 280s > length(current) == length(index) 280s [1] TRUE 280s > 280s 280s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 280s Copyright (C) 2024 The R Foundation for Statistical Computing 280s Platform: aarch64-unknown-linux-gnu (64-bit) 280s 280s R is free software and comes with ABSOLUTELY NO WARRANTY. 280s You are welcome to redistribute it under certain conditions. 280s Type 'license()' or 'licence()' for distribution details. 280s 280s R is a collaborative project with many contributors. 280s Type 'contributors()' for more information and 280s 'citation()' on how to cite R or R packages in publications. 280s 280s Type 'demo()' for some demos, 'help()' for on-line help, or 280s 'help.start()' for an HTML browser interface to help. 280s Type 'q()' to quit R. 280s 280s > library(adegraphics) 280s Registered S3 methods overwritten by 'adegraphics': 280s method from 280s biplot.dudi ade4 280s kplot.foucart ade4 280s kplot.mcoa ade4 280s kplot.mfa ade4 280s kplot.pta ade4 280s kplot.sepan ade4 280s kplot.statis ade4 280s scatter.coa ade4 280s scatter.dudi ade4 280s scatter.nipals ade4 280s scatter.pco ade4 280s score.acm ade4 280s score.mix ade4 280s score.pca ade4 280s screeplot.dudi ade4 280s > library(sp) 280s > pdf("s.image.pdf") 280s > 280s > ## ex1 280s > xy <- data.frame(expand.grid(-3:3, -3:3)) 280s > names(xy) <- c("x", "y") 280s > z <- (1 / sqrt(2)) * exp(-(xy$x ^ 2 + xy$y ^ 2) / 2) 280s > s.image(xy, z) 281s > s.image(xy, z, grid = 20) 281s > s.image(xy, z, grid = 500) 281s > 281s > ## ex2 281s > Sr1 <- Polygon(cbind(c(0, 1, 2, 1, 2, 0 , -2, -1, -2, -1, 0), c(2.5, 1.5, 2, 0, -2, -1, -2, 0, 2, 1.5, 2.5))) 281s > Srs1 <- Polygons(list(Sr1), ID = "stars") 281s > SPp1 <- SpatialPolygons(list(Srs1)) 281s > xy1 <- cbind(rnorm(100, 0, 1), rnorm(100, 0, 1.5)) 281s > g1 <- s.image(xy1, runif(100), outsideLimits = SPp1) 282s > 282s > ## ex3 282s > Sr2 <- Polygon(cbind(c(-0.5, 0.5, 0.5, -0.5, -0.5), c(0, 0, 1 ,1, 0)), hole = TRUE) 282s > Srs2 <- Polygons(list(Sr1, Sr2), ID = "hole") 282s > SPp2 <- SpatialPolygons(list(Srs2)) 282s > xy2 <- cbind(c(rnorm(2000, 1, 0.25), rnorm(3000, -1, 1.5)), c(rnorm(2000, 1, 0.5), rnorm(3000, -1, 3))) 282s > z <- c(rnorm(2000, 12, 1), rnorm(3000, 1, 2)) 282s > g2 <- s.image(xy2, z, outsideLimits = SPp2, grid = 500, xlim = c(-2.5, 2.5), ylim = c(-2, 3)) 283s > 283s 283s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 283s Copyright (C) 2024 The R Foundation for Statistical Computing 283s Platform: aarch64-unknown-linux-gnu (64-bit) 283s 283s R is free software and comes with ABSOLUTELY NO WARRANTY. 283s You are welcome to redistribute it under certain conditions. 283s Type 'license()' or 'licence()' for distribution details. 283s 283s R is a collaborative project with many contributors. 283s Type 'contributors()' for more information and 283s 'citation()' on how to cite R or R packages in publications. 283s 283s Type 'demo()' for some demos, 'help()' for on-line help, or 283s 'help.start()' for an HTML browser interface to help. 283s Type 'q()' to quit R. 283s 283s > library(adegraphics) 283s Registered S3 methods overwritten by 'adegraphics': 283s method from 283s biplot.dudi ade4 283s kplot.foucart ade4 283s kplot.mcoa ade4 283s kplot.mfa ade4 283s kplot.pta ade4 283s kplot.sepan ade4 283s kplot.statis ade4 283s scatter.coa ade4 283s scatter.dudi ade4 283s scatter.nipals ade4 283s scatter.pco ade4 283s score.acm ade4 283s score.mix ade4 283s score.pca ade4 283s screeplot.dudi ade4 283s > library(grid) 283s > pdf("s.label.pdf") 283s > 283s > x0 <- runif(50, -2, 2) 283s > y0 <- runif(50, -2, 2) 283s > z <- x0 ^ 2 + y0 ^ 2 283s > dfxy1 <- data.frame(x0, y0) 283s > g1 <- s.label(dfxy1, label = as.character(z < 1), paxes.draw = TRUE, axis.text = list(col = "grey")) 284s > g2 <- s.label(dfxy1[1, ]) 284s > g3 <- s.label(dfxy1[1, ], pori.incl = FALSE) 284s > g4 <- s.label(dfxy1, labels = c("", "MM", "", NA, "ooo"), plabels.optim = TRUE) 284s > g5 <- s.label(dfxy1, labels = as.character(z < 1), psub = list(text = "Subtitle", col = "blue", position = "topleft"), plabels.col = 1:5, pgrid.text.pos = c(unit(0.95, "npc"), unit(0.94, "npc"))) 284s > 284s > dfxy2 <- cbind(dfxy1, runif(50, -5, 5)) 284s > g6 <- s.label(dfxy2, xax = 1, yax = 2:3, paxes.draw = TRUE, paxes.aspectratio = 1.5, plabels.cex = 0.8) 284s > 284s > l <- ls() 284s > x1 <- runif(length(l)) 284s > x2 <- runif(100) 284s > y1 <- runif(length(l)) 284s > y2 <- runif(100) 284s > g7 <- s.label(cbind(x2, y2), labels = as.character((x2 * x2 + y2 * y2) < 1)) 284s > g8 <- s.label(cbind(x1, y1), labels = l, add = TRUE, plabels.col = "blue") 284s > 284s 284s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 284s Copyright (C) 2024 The R Foundation for Statistical Computing 284s Platform: aarch64-unknown-linux-gnu (64-bit) 284s 284s R is free software and comes with ABSOLUTELY NO WARRANTY. 284s You are welcome to redistribute it under certain conditions. 284s Type 'license()' or 'licence()' for distribution details. 284s 284s R is a collaborative project with many contributors. 284s Type 'contributors()' for more information and 284s 'citation()' on how to cite R or R packages in publications. 284s 284s Type 'demo()' for some demos, 'help()' for on-line help, or 284s 'help.start()' for an HTML browser interface to help. 284s Type 'q()' to quit R. 284s 284s > library(adegraphics) 285s Registered S3 methods overwritten by 'adegraphics': 285s method from 285s biplot.dudi ade4 285s kplot.foucart ade4 285s kplot.mcoa ade4 285s kplot.mfa ade4 285s kplot.pta ade4 285s kplot.sepan ade4 285s kplot.statis ade4 285s scatter.coa ade4 285s scatter.dudi ade4 285s scatter.nipals ade4 285s scatter.pco ade4 285s score.acm ade4 285s score.mix ade4 285s score.pca ade4 285s screeplot.dudi ade4 285s > pdf("s.logo.pdf") 285s > 285s > ## ex1 285s > data(ggtortoises, package = "ade4") 285s > ico <- ggtortoises$ico[as.character(ggtortoises$pop$carap)] 285s > g1 <- s.logo(ggtortoises$pop, ico, pori.incl = FALSE) 285s Loading required package: pixmap 285s > g2 <- s.label(ggtortoises$pop, add = TRUE, plabels = list(boxes = list(alpha = 0.4, border = "transparent"))) 285s > 285s > ## ex2 285s > data(capitales, package = "ade4") 285s > index <- unlist(lapply(1:15, function(i) which(names(capitales$logo) == tolower(rownames(capitales$xy)[i]))), use.names = FALSE) 285s > g3 <- s.logo(capitales$xy, capitales$logo[index]) 285s > 285s > x <- c(0, max(capitales$area$x)) 285s > y <- c(0, max(capitales$area$y)) 285s > #g4 <- s.image(cbind(x, y), z = c(1, 2), outsideLimits = capitales$area, grid = 500, regions = list(col = "yellow", alpha = 0.9)) 285s > #s.logo(capitales$xy, capitales$logo[index], add = TRUE) 285s > 285s 285s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 285s Copyright (C) 2024 The R Foundation for Statistical Computing 285s Platform: aarch64-unknown-linux-gnu (64-bit) 285s 285s R is free software and comes with ABSOLUTELY NO WARRANTY. 285s You are welcome to redistribute it under certain conditions. 285s Type 'license()' or 'licence()' for distribution details. 285s 285s R is a collaborative project with many contributors. 285s Type 'contributors()' for more information and 285s 'citation()' on how to cite R or R packages in publications. 285s 285s Type 'demo()' for some demos, 'help()' for on-line help, or 285s 'help.start()' for an HTML browser interface to help. 285s Type 'q()' to quit R. 285s 285s > library(adegraphics) 286s Registered S3 methods overwritten by 'adegraphics': 286s method from 286s biplot.dudi ade4 286s kplot.foucart ade4 286s kplot.mcoa ade4 286s kplot.mfa ade4 286s kplot.pta ade4 286s kplot.sepan ade4 286s kplot.statis ade4 286s scatter.coa ade4 286s scatter.dudi ade4 286s scatter.nipals ade4 286s scatter.pco ade4 286s score.acm ade4 286s score.mix ade4 286s score.pca ade4 286s screeplot.dudi ade4 286s > pdf("s.match.pdf") 286s > 286s > X <- data.frame(x = runif(50, -1, 2), y = runif(50, -1, 2)) 286s > Y <- X + rnorm(100, sd = 0.3) 286s > 286s > g1 <- s.match(X, Y, ppoints.cex = 0, col = c("blue", "red")) 286s > g2 <- s.match(X, Y, arr = FALSE, ppoints.cex = 2, ppoints.col = c("blue", "green")) 286s > g3 <- s.match(X, Y, arr = FALSE) 286s > g4 <- s.match(X, Y, arrows = TRUE, plabels = list(alpha = 1, col = "black", cex = 1), plines = list(col = "red"), panel.background = list(col = "antiquewhite")) 286s > 286s 286s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 286s Copyright (C) 2024 The R Foundation for Statistical Computing 286s Platform: aarch64-unknown-linux-gnu (64-bit) 286s 286s R is free software and comes with ABSOLUTELY NO WARRANTY. 286s You are welcome to redistribute it under certain conditions. 286s Type 'license()' or 'licence()' for distribution details. 286s 286s R is a collaborative project with many contributors. 286s Type 'contributors()' for more information and 286s 'citation()' on how to cite R or R packages in publications. 286s 286s Type 'demo()' for some demos, 'help()' for on-line help, or 286s 'help.start()' for an HTML browser interface to help. 286s Type 'q()' to quit R. 286s 287s > library(adegraphics) 287s Registered S3 methods overwritten by 'adegraphics': 287s method from 287s biplot.dudi ade4 287s kplot.foucart ade4 287s kplot.mcoa ade4 287s kplot.mfa ade4 287s kplot.pta ade4 287s kplot.sepan ade4 287s kplot.statis ade4 287s scatter.coa ade4 287s scatter.dudi ade4 287s scatter.nipals ade4 287s scatter.pco ade4 287s score.acm ade4 287s score.mix ade4 287s score.pca ade4 287s screeplot.dudi ade4 287s > pdf("s.traject.pdf") 287s > 287s > rw <- function(a){ 287s + x <- 0 287s + for(i in 1:49) 287s + x <- c(x, x[length(x)] + runif(1, -1, 1)) 287s + x 287s + } 287s > 287s > x <- unlist(lapply(1:5, rw), use.names = FALSE) 287s > y <- unlist(lapply(1:5, rw), use.names = FALSE) 287s > z <- gl(5, 50) 287s > g1 <- s.traject(data.frame(x, y), z, ppoints.pch = 19:23, plines.col = rainbow(5)) 287s > 287s > x <- unlist(lapply(1:2, rw), use.names = FALSE) 287s > y <- unlist(lapply(1:2, rw), use.names = FALSE) 287s > z <- gl(2, 50) 287s > g2 <- s.traject(data.frame(x, y), z, ppoints.pch = 21:20, plines.col = 1:2) 288s > 288s 288s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 288s Copyright (C) 2024 The R Foundation for Statistical Computing 288s Platform: aarch64-unknown-linux-gnu (64-bit) 288s 288s R is free software and comes with ABSOLUTELY NO WARRANTY. 288s You are welcome to redistribute it under certain conditions. 288s Type 'license()' or 'licence()' for distribution details. 288s 288s R is a collaborative project with many contributors. 288s Type 'contributors()' for more information and 288s 'citation()' on how to cite R or R packages in publications. 288s 288s Type 'demo()' for some demos, 'help()' for on-line help, or 288s 'help.start()' for an HTML browser interface to help. 288s Type 'q()' to quit R. 288s 288s > library(adegraphics) 288s Registered S3 methods overwritten by 'adegraphics': 288s method from 288s biplot.dudi ade4 288s kplot.foucart ade4 288s kplot.mcoa ade4 288s kplot.mfa ade4 288s kplot.pta ade4 288s kplot.sepan ade4 288s kplot.statis ade4 288s scatter.coa ade4 288s scatter.dudi ade4 288s scatter.nipals ade4 288s scatter.pco ade4 288s score.acm ade4 288s score.mix ade4 288s score.pca ade4 288s screeplot.dudi ade4 288s > pdf("s.value.pdf") 288s > 288s > ## ex1 288s > xy <- cbind.data.frame(x = runif(50, -1, 1), y = runif(50, 0, 2)) 288s > z <- rnorm(50) 288s > z <- sapply(z, function(X) max(X, -3)) 288s > z <- sapply(z, function(X) min(X, 3)) 288s > val1 <- s.value(xy, z, method = "size", symbol = "square", plot = F) 288s > val2 <- s.value(xy, z, method = "color", symbol = "square", plot = F) 288s > val3 <- s.value(xy, z, method = "size", symbol = "circle", plot = F) 288s > val4 <- s.value(xy, z, method = "color", symbol = "circle", plot = F) 288s > g1 <- ADEgS(c(val1, val2, val3, val4), positions = layout2position(matrix(c(1, 2, 3, 4), 2, 2)), add = matrix(0, ncol = 4, nrow = 4)) 289s > g2 <- s.value(xy, z, method = "color", symbol = "square", breaks = c(-3, -1, -0.5, 0, 0.5, 1, 3)) 289s > g3 <- s.value(xy, z, method = "color", col = colorRampPalette(c("yellow", "blue"))(6)) 289s > g4 <- s.value(xy, z, method = "size", symbol = "circle", paxes.draw = FALSE) 289s > 289s > ## ex2 289s > xx <- runif(100) * 100 289s > yy <- 1:100 289s > zz <- 1:100 289s > breaks <- c(0, 25, 50, 75, 100) 289s > g5 <- s.value(data.frame(xx, yy), zz, breaks = breaks, method = "color", paxes.draw = TRUE, porigin.include = FALSE) 289s > g6 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), breaks = breaks, method = "color", col = c("blue", "red", "green", "yellow"), paxes.draw = TRUE) 289s > g7 <- s.value(data.frame(xx, yy), cbind(zz, rev(zz)), nclass = c(2, 6), method = "color", col = c("blue", "red", "pink", "green", "yellow"), paxes.draw = TRUE) 289s > 289s > ## ex3 289s > data(rpjdl, package = "ade4") 289s > fau.coa <- ade4::dudi.coa(rpjdl$fau, scan = FALSE, nf = 3) 289s > val5 <- s.value(fau.coa$li, fau.coa$li[,3], plot = FALSE) 289s > val6 <- s.value(fau.coa$li, fau.coa$li[, 3], center = 0, method = "size", symbol = "circle", col = c("yellow", "red"), plot = FALSE) 289s > g8 <- ADEgS(c(val5, val6), positions = layout2position(matrix(c(1, 2), 1, 2)), add = matrix(0, ncol = 2, nrow = 2)) 289s > 289s > ## ex3 289s > data(doubs, package = "ade4") 289s > g9 <- s.value(doubs$xy, doubs$env[, 1:2]) 289s > g10 <- s.value(doubs$xy, doubs$env) 290s > 290s 290s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 290s Copyright (C) 2024 The R Foundation for Statistical Computing 290s Platform: aarch64-unknown-linux-gnu (64-bit) 290s 290s R is free software and comes with ABSOLUTELY NO WARRANTY. 290s You are welcome to redistribute it under certain conditions. 290s Type 'license()' or 'licence()' for distribution details. 290s 290s R is a collaborative project with many contributors. 290s Type 'contributors()' for more information and 290s 'citation()' on how to cite R or R packages in publications. 290s 290s Type 'demo()' for some demos, 'help()' for on-line help, or 290s 'help.start()' for an HTML browser interface to help. 290s Type 'q()' to quit R. 290s 290s > library(ade4) 290s > library(adegraphics) 291s Registered S3 methods overwritten by 'adegraphics': 291s method from 291s biplot.dudi ade4 291s kplot.foucart ade4 291s kplot.mcoa ade4 291s kplot.mfa ade4 291s kplot.pta ade4 291s kplot.sepan ade4 291s kplot.statis ade4 291s scatter.coa ade4 291s scatter.dudi ade4 291s scatter.nipals ade4 291s scatter.pco ade4 291s score.acm ade4 291s score.mix ade4 291s score.pca ade4 291s screeplot.dudi ade4 291s 291s Attaching package: 'adegraphics' 291s 291s The following objects are masked from 'package:ade4': 291s 291s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 291s s.label, s.logo, s.match, s.traject, s.value, table.value, 291s triangle.class 291s 291s > pdf("s1d.barchart.pdf") 291s > 291s > ## 1 : reverse and horizontal 291s > set.seed(40) 291s > x1 <- rnorm(10) 291s > g11 <- s1d.barchart(x1) 291s > g12 <- s1d.barchart(x1, ppoly.col = "blue") 291s > 291s > g21 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = TRUE) 291s > g23 <- s1d.barchart(x1, p1d.hori = FALSE, p1d.rev = FALSE) 291s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = TRUE) 291s > g24 <- s1d.barchart(x1, p1d.hori = TRUE, p1d.rev = FALSE) 291s > 291s > ## 2 : at and sort 291s > data(rpjdl, package = "ade4") 291s > rpjdl.coa <- ade4::dudi.coa(rpjdl$fau, scannf = FALSE, nf = 4) 291s > nam <- rownames(rpjdl.coa$co) 291s > gg1 <- s1d.barchart(rpjdl.coa$co[, 1]) 291s > gg2 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, at = 51:1) 291s > gg3 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE) 291s > gg4 <- s1d.barchart(rpjdl.coa$co[, 1], labels = nam, sort = TRUE, at = 51:1) # 'at' is ignored 291s > gg5 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = TRUE) 291s > gg6 <- s1d.barchart(rpjdl.coa$co, labels = nam, sort = FALSE) 292s > stopifnot(gg6[[1]]@data$labels == gg6[[2]]@data$labels) 292s > 292s 292s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 292s Copyright (C) 2024 The R Foundation for Statistical Computing 292s Platform: aarch64-unknown-linux-gnu (64-bit) 292s 292s R is free software and comes with ABSOLUTELY NO WARRANTY. 292s You are welcome to redistribute it under certain conditions. 292s Type 'license()' or 'licence()' for distribution details. 292s 292s R is a collaborative project with many contributors. 292s Type 'contributors()' for more information and 292s 'citation()' on how to cite R or R packages in publications. 292s 292s Type 'demo()' for some demos, 'help()' for on-line help, or 292s 'help.start()' for an HTML browser interface to help. 292s Type 'q()' to quit R. 292s 292s > library(adegraphics) 292s Registered S3 methods overwritten by 'adegraphics': 292s method from 292s biplot.dudi ade4 292s kplot.foucart ade4 292s kplot.mcoa ade4 292s kplot.mfa ade4 292s kplot.pta ade4 292s kplot.sepan ade4 292s kplot.statis ade4 292s scatter.coa ade4 292s scatter.dudi ade4 292s scatter.nipals ade4 292s scatter.pco ade4 292s score.acm ade4 292s score.mix ade4 292s score.pca ade4 292s screeplot.dudi ade4 292s > pdf("s1d.boxplot.pdf") 292s > 292s > ## ex1 292s > x <- c(rnorm(10), rnorm(10)) 292s > fact <- factor(rep(c("A", "B"), 10)) 292s > g11 <- s1d.boxplot(x, fact) 292s > g12 <- s1d.boxplot(x, fact, col = TRUE) 293s > g12 <- s1d.boxplot(x, fact, col = 2:3) 293s > g12 <- s1d.boxplot(x, fact, col = TRUE, plines.col = "black") 293s > 293s > g2 <- s1d.boxplot(x, fact, ppolygon.border = c("red", "blue"), box.rectangle = list(alpha = 1, fill = "green")) 293s > 293s > ## ex2 293s > w1 <- rnorm(100, -1) 293s > w2 <- rnorm(100) 293s > w3 <- rnorm(100, 1) 293s > f1 <- gl(3, 100) 293s > f2 <- gl(30, 10) 293s > g3 <- s1d.boxplot(c(w1, w2, w3), f1) 293s > g4 <- s1d.boxplot(c(w1, w2, w3), f2) 293s > g5 <- s1d.boxplot(c(w1, w2, w3), f2, p1d.rug.draw = FALSE) 293s > 293s > mat <- matrix(0, ncol = 1, nrow = 8) 293s > mat[c(2), ] <- 1 293s > mat[c(3:8), ] <- 2 293s > mat[1, ] <- 3 293s > g6 <- ADEgS(c(g3, g4, s1d.label(c(w1, w2, w3), p1d = list(rug = list(tck = 0.8), rev = TRUE), ppoints.cex = 0, plabels.cex = 0, plot = F, pgrid.draw = F)), 293s + layout = matrix((rev(mat)), ncol = 1)) 293s > g7 <- s1d.boxplot(c(w1, w2, w3), data.frame(f1, f2)) 293s > 293s > ## ex3 293s > data(banque, package = "ade4") 293s > banque.acm <- ade4::dudi.acm(banque, scan = FALSE, nf = 4) 293s > s1d.boxplot(banque.acm$l1[, 1], banque[, 1:7], plabels.cex = 1.8) 294s > 294s > 294s 294s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 294s Copyright (C) 2024 The R Foundation for Statistical Computing 294s Platform: aarch64-unknown-linux-gnu (64-bit) 294s 294s R is free software and comes with ABSOLUTELY NO WARRANTY. 294s You are welcome to redistribute it under certain conditions. 294s Type 'license()' or 'licence()' for distribution details. 294s 294s R is a collaborative project with many contributors. 294s Type 'contributors()' for more information and 294s 'citation()' on how to cite R or R packages in publications. 294s 294s Type 'demo()' for some demos, 'help()' for on-line help, or 294s 'help.start()' for an HTML browser interface to help. 294s Type 'q()' to quit R. 294s 294s > library(adegraphics) 294s Registered S3 methods overwritten by 'adegraphics': 294s method from 294s biplot.dudi ade4 294s kplot.foucart ade4 294s kplot.mcoa ade4 294s kplot.mfa ade4 294s kplot.pta ade4 294s kplot.sepan ade4 294s kplot.statis ade4 294s scatter.coa ade4 294s scatter.dudi ade4 294s scatter.nipals ade4 294s scatter.pco ade4 294s score.acm ade4 294s score.mix ade4 294s score.pca ade4 294s screeplot.dudi ade4 294s > pdf("s1d.class.pdf") 294s > data(meau, package = "ade4") 294s > 294s > ## ex1 294s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 294s > g1 <- s1d.class(envpca$li[, 1], poslab = "value", meau$design$season, col = 1:6) 294s > update(g1, p1d.horizontal = FALSE) 295s > update(g1, p1d.reverse = TRUE) 295s > g2 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.reverse = TRUE) 295s > g3 <- s1d.class(envpca$li[, 1], meau$design$season, col = 1:6, p1d.hori = F) 295s > 295s > ## ex2 295s > set.seed(0) 295s > score1 <- c(rnorm(3, mean = 0, sd = 0.5), rnorm(3, mean = 1, sd = 0.5), rnorm(5, mean = 2, sd = 0.5)) 295s > factor1 <- factor(rep(LETTERS[1:3], times = c(3, 3, 5))) 295s > g41 <- s1d.class(score1, factor1) 295s > g42 <- s1d.class(score1, factor1, col = 1:3) 295s > g43 <- s1d.class(score1, factor1, col = TRUE) 295s > g44 <- s1d.class(score1, factor1, col = FALSE) 295s > g45 <- s1d.class(score1, factor1, plines.col = "grey") 295s > g46 <- s1d.class(score1, factor1, plines.col = "grey", col = TRUE) 295s > 295s > ## ex3 295s > score2 <- c(rnorm(10, mean = 0, sd = 0.5), rnorm(15, mean = -1, sd = 0.2), rnorm(10, mean = 2, sd = 0.5)) 295s > factor2 <- factor(rep(c(1, 3, 2), times = c(10, 15, 10))) 295s > levels(factor2) <- c("mean0", "mean2", "mean-1") 295s > g5 <- s1d.class(score2, factor2, col = 1:3) 295s > update(g5, posla = "value") 295s > 295s > indx <- rank(rnorm(35)) 295s > factor2 <- factor2[rank(indx)] 295s > s1d.class(score2[indx], factor2[indx], col = 1:3, posla = "regular") 295s > 295s > 295s 295s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 295s Copyright (C) 2024 The R Foundation for Statistical Computing 295s Platform: aarch64-unknown-linux-gnu (64-bit) 295s 295s R is free software and comes with ABSOLUTELY NO WARRANTY. 295s You are welcome to redistribute it under certain conditions. 295s Type 'license()' or 'licence()' for distribution details. 295s 295s R is a collaborative project with many contributors. 295s Type 'contributors()' for more information and 295s 'citation()' on how to cite R or R packages in publications. 295s 295s Type 'demo()' for some demos, 'help()' for on-line help, or 295s 'help.start()' for an HTML browser interface to help. 295s Type 'q()' to quit R. 295s 296s > library(adegraphics) 296s Registered S3 methods overwritten by 'adegraphics': 296s method from 296s biplot.dudi ade4 296s kplot.foucart ade4 296s kplot.mcoa ade4 296s kplot.mfa ade4 296s kplot.pta ade4 296s kplot.sepan ade4 296s kplot.statis ade4 296s scatter.coa ade4 296s scatter.dudi ade4 296s scatter.nipals ade4 296s scatter.pco ade4 296s score.acm ade4 296s score.mix ade4 296s score.pca ade4 296s screeplot.dudi ade4 296s > pdf("s1d.density.pdf") 296s > 296s > set.seed(40) 296s > x1 <- rnorm(1000) 296s > g11 <- s1d.density(x1) 296s > g12 <- s1d.density(x1, col = FALSE, ppoly.col = "blue", p1d.rev = TRUE) 296s > g13 <- s1d.density(x1, col = TRUE, ppoly.col = "blue", p1d.hori = FALSE) 296s > g14 <- s1d.density(x1, col = TRUE, p1d.hori = FALSE, p1d.rev = TRUE) 296s > 296s > update(g11, ppolygons.border = "red") 296s > update(g11, col = FALSE, ppolygons.col = "black") 296s > update(g11, ppolygons.lwd = 3, ppolygons.lty = 3, ppolygons.alpha = 1) 296s > update(g11, ylim = c(-0.04, 0.5)) 296s > 296s > set.seed(50) 296s > x2 <- c(rnorm(1000, mean = -0.5, sd = 0.5), rnorm(1000, mean = 1)) 296s > fact <- rep(c("A", "B"), each = 1000) 296s > g21 <- s1d.density(x2, fact, col = c("red", "blue")) 297s > g22 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3) 297s > g23 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.rev = TRUE) 297s > g24 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE) 297s > g25 <- s1d.density(x2, fact, col = FALSE, ppoly.col = 2:3, p1d.horizontal = FALSE, p1d.rev = TRUE) 297s > 297s > set.seed(60) 297s > x3 <- rnorm(1000) 297s > g31 <- s1d.density(x3) 297s > g32 <- s1d.density(x3, p1d.rug.draw = FALSE) 297s > g33 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.rev = TRUE) 297s > g34 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE) 297s > g35 <- s1d.density(x3, p1d.rug.draw = FALSE, p1d.hori = FALSE, p1d.rev = TRUE) 297s > 297s > update(g31, p1d.rev = TRUE) 297s > update(g32, p1d.rev = TRUE) 297s > update(g33, p1d.rev = FALSE) 297s > update(g34, p1d.rev = TRUE) 297s > update(g35, p1d.rev = FALSE) 297s > 297s > 297s 297s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 297s Copyright (C) 2024 The R Foundation for Statistical Computing 297s Platform: aarch64-unknown-linux-gnu (64-bit) 297s 297s R is free software and comes with ABSOLUTELY NO WARRANTY. 297s You are welcome to redistribute it under certain conditions. 297s Type 'license()' or 'licence()' for distribution details. 297s 297s R is a collaborative project with many contributors. 297s Type 'contributors()' for more information and 297s 'citation()' on how to cite R or R packages in publications. 297s 297s Type 'demo()' for some demos, 'help()' for on-line help, or 297s 'help.start()' for an HTML browser interface to help. 297s Type 'q()' to quit R. 297s 297s > library(adegraphics) 298s Registered S3 methods overwritten by 'adegraphics': 298s method from 298s biplot.dudi ade4 298s kplot.foucart ade4 298s kplot.mcoa ade4 298s kplot.mfa ade4 298s kplot.pta ade4 298s kplot.sepan ade4 298s kplot.statis ade4 298s scatter.coa ade4 298s scatter.dudi ade4 298s scatter.nipals ade4 298s scatter.pco ade4 298s score.acm ade4 298s score.mix ade4 298s score.pca ade4 298s screeplot.dudi ade4 298s > pdf("s1d.distri.pdf") 298s > 298s > ## ex1 298s > score <- rnorm(10) 298s > df <- data.frame(matrix(rep(c(1, 2), 10), ncol = 2)) 298s > g1 <- s1d.distri(score, df) 298s > 298s > ## ex2 298s > set.seed(1) 298s > w <- seq(-1, 1, le = 200) 298s > distri <- data.frame(lapply(1:50, function(x) sample(200:1) * ((w >= (- x / 50)) & (w <= x / 50)))) 298s > names(distri) <- paste("w", 1:50, sep = "") 298s > g2 <- s1d.distri(w, distri) 298s > g3 <- s1d.distri(w, distri, yrank = TRUE, sdS = 1.5) 298s > 298s > g4 <- s1d.distri(w, distri, p1d.rug.draw = FALSE) 298s > g5 <- s1d.distri(w, distri, p1d.reverse = TRUE) 298s > g6 <- s1d.distri(w, distri, p1d.hori = FALSE) 298s > g7 <- s1d.distri(w, distri, p1d.hori = FALSE, p1d.reverse = TRUE) 298s > 298s > update(g2, p1d.rug.draw = FALSE) 299s > update(g5, p1d.rug.draw = FALSE) 299s > 299s 299s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 299s Copyright (C) 2024 The R Foundation for Statistical Computing 299s Platform: aarch64-unknown-linux-gnu (64-bit) 299s 299s R is free software and comes with ABSOLUTELY NO WARRANTY. 299s You are welcome to redistribute it under certain conditions. 299s Type 'license()' or 'licence()' for distribution details. 299s 299s R is a collaborative project with many contributors. 299s Type 'contributors()' for more information and 299s 'citation()' on how to cite R or R packages in publications. 299s 299s Type 'demo()' for some demos, 'help()' for on-line help, or 299s 'help.start()' for an HTML browser interface to help. 299s Type 'q()' to quit R. 299s 299s > library(adegraphics) 299s Registered S3 methods overwritten by 'adegraphics': 299s method from 299s biplot.dudi ade4 299s kplot.foucart ade4 299s kplot.mcoa ade4 299s kplot.mfa ade4 299s kplot.pta ade4 299s kplot.sepan ade4 299s kplot.statis ade4 299s scatter.coa ade4 299s scatter.dudi ade4 299s scatter.nipals ade4 299s scatter.pco ade4 299s score.acm ade4 299s score.mix ade4 299s score.pca ade4 299s screeplot.dudi ade4 299s > pdf("s1d.gauss.pdf") 299s > 299s > data(meau, package= "ade4") 299s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 299s > dffac <- cbind.data.frame(meau$design$season, meau$design$site) 299s > g11 <- s1d.gauss(envpca$li[, 1], dffac[, 1]) 300s > g12 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.rev = TRUE) 300s > g13 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE) 300s > g14 <- s1d.gauss(envpca$li[, 1], dffac[, 1], p1d.hori = FALSE, p1d.rev = TRUE) 300s > 300s > g2 <- s1d.gauss(envpca$li[, 1], dffac[, 1], ppoly.col = 1:4, fill = TRUE, plines.col = 1:4, col = FALSE) 300s > 300s > g31 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, ylim = c(0, 2), fill = TRUE, p1d.hori = FALSE) 300s > g32 <- s1d.gauss(envpca$li[, 1], dffac[, 2], ppoly.col = 1:4, paxes.draw = TRUE, fill = TRUE, p1d.hori = FALSE) 300s > 300s > g4 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:5) 300s > g5 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = FALSE, ppoly.col = 1:6) 300s > g6 <- s1d.gauss(envpca$li[, 1], fac = dffac[, 1], fill = TRUE, col = 1:6, ppoly.col = 1:6) 300s > 300s > g7 <- s1d.gauss(envpca$li[, 1], fac = dffac, fill = TRUE, col = 1:6, ppoly.col = 1:6, steps = 10) 300s > g8 <- s1d.gauss(envpca$li[, 1], dffac[, 2]) 300s > 300s > update(g11, p1d.reverse = TRUE) 300s > update(g12, p1d.reverse = FALSE) 300s > update(g13, p1d.reverse = TRUE) 300s > update(g14, p1d.reverse = FALSE) 300s > 301s 301s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 301s Copyright (C) 2024 The R Foundation for Statistical Computing 301s Platform: aarch64-unknown-linux-gnu (64-bit) 301s 301s R is free software and comes with ABSOLUTELY NO WARRANTY. 301s You are welcome to redistribute it under certain conditions. 301s Type 'license()' or 'licence()' for distribution details. 301s 301s R is a collaborative project with many contributors. 301s Type 'contributors()' for more information and 301s 'citation()' on how to cite R or R packages in publications. 301s 301s Type 'demo()' for some demos, 'help()' for on-line help, or 301s 'help.start()' for an HTML browser interface to help. 301s Type 'q()' to quit R. 301s 301s > library(ade4) 301s > library(adegraphics) 301s Registered S3 methods overwritten by 'adegraphics': 301s method from 301s biplot.dudi ade4 301s kplot.foucart ade4 301s kplot.mcoa ade4 301s kplot.mfa ade4 301s kplot.pta ade4 301s kplot.sepan ade4 301s kplot.statis ade4 301s scatter.coa ade4 301s scatter.dudi ade4 301s scatter.nipals ade4 301s scatter.pco ade4 301s score.acm ade4 301s score.mix ade4 301s score.pca ade4 301s screeplot.dudi ade4 301s 301s Attaching package: 'adegraphics' 301s 301s The following objects are masked from 'package:ade4': 301s 301s kplotsepan.coa, s.arrow, s.class, s.corcircle, s.distri, s.image, 301s s.label, s.logo, s.match, s.traject, s.value, table.value, 301s triangle.class 301s 301s > pdf("s1d.hist.pdf") 301s > 301s > set.seed(40) 301s > x1 <- rnorm(1000) 301s > g11 <- s1d.hist(x1) 301s > g12 <- s1d.hist(x1, col = 1:10) 301s > g13 <- s1d.hist(x1, col = FALSE, ppoly.col = 1:10) 301s > g14 <- s1d.hist(x1, col = TRUE, ppoly.col = "blue") 301s > 301s > set.seed(50) 301s > x1 <- rnorm(1000) 301s > g21 <- s1d.hist(x1) # p1d.hori = TRUE and p1d.reverse = FALSE by default 301s > # g22 <- s1d.hist(x1, p1d.hori = TRUE, p1d.rev = TRUE) 301s > g23 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = FALSE) 301s > # g24 <- s1d.hist(x1, p1d.hori = FALSE, p1d.rev = TRUE) 301s > 301s > 301s > # randtest.pcaiv 301s > data(rpjdl, package = "ade4") 302s > millog <- log(rpjdl$mil + 1) 302s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 302s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 302s > set.seed(50) 302s > rd11 <- randtest(caiv1) 302s > plot(rd11) 302s > set.seed(50) 302s > rd12 <- randtest(caiv1, output = "full") 302s > plot(rd12, nclass = 15) # must be the same output as rd11 302s > set.seed(50) 302s > rd13 <- randtest(caiv1, output = "full") 302s > plot(rd13, nclass = 8) 302s > plot(rd13, nclass = 8, plines.col = "red") 302s > plot(rd13, nclass = 8, obs.plines.col = "red") 303s > plot(rd13, nclass = 8, sim.plines.col = "red") 303s > 303s > # randtest.dpcoa 303s > data(humDNAm, package = "ade4") 303s > dpcoahum <- dpcoa(data.frame(t(humDNAm$samples)), sqrt(humDNAm$distances), scan = FALSE, nf = 2) 303s > set.seed(50) 303s > rd21 <- randtest(dpcoahum) 303s > plot(rd21) 303s > rd22 <- randtest(dpcoahum, output = "full") 303s > plot(rd22) 303s > 303s > # randtest.amova (plot.krandtest) 303s > amovahum <- amova(humDNAm$samples, sqrt(humDNAm$distances), humDNAm$structures) 303s > set.seed(50) 303s > rd31 <- randtest(amovahum, 49) 304s > plot(rd31) 304s > plot(rd31, plines.col = "red") 304s > plot(rd31, g1.plines.col = "red") 304s > set.seed(50) 304s > rd32 <- randtest(amovahum, 49, output = "full") 304s > plot(rd32) 305s > plot(rd32, plines.col = "red") 305s > plot(rd32, g1.plines.col = "red") 305s > plot(rd32, nclass = 30, g2.pback.col = "lightblue") 305s > 305s > # randtest.coinertia 305s > data(doubs, package = "ade4") 305s > dudi1 <- dudi.pca(doubs$env, scale = TRUE, scan = FALSE, nf = 3) 305s > dudi2 <- dudi.pca(doubs$fish, scale = FALSE, scan = FALSE, nf = 2) 305s > coin1 <- coinertia(dudi1,dudi2, scan = FALSE, nf = 2) 305s > set.seed(50) 305s > rd4 <- randtest(coin1) 305s > plot(rd4) 305s > 305s > # randtest.pcaivortho 305s > data(rpjdl, package = "ade4") 305s > millog <- log(rpjdl$mil + 1) 305s > coa1 <- dudi.coa(rpjdl$fau, scann = FALSE) 306s > caiv1 <- pcaiv(coa1, millog, scan = FALSE) 306s > set.seed(50) 306s > rd5 <- randtest(caiv1) 306s > plot(rd5) 306s > 306s > # randtest.rlq (plot.krandtest) 306s > data(aviurba, package = "ade4") 306s > coa1 <- dudi.coa(aviurba$fau, scannf = FALSE, nf = 2) 306s > dudimil <- dudi.hillsmith(aviurba$mil, scannf = FALSE, nf = 2, row.w = coa1$lw) 306s > duditrait <- dudi.hillsmith(aviurba$traits, scannf = FALSE, nf = 2, row.w = coa1$cw) 306s > rlq1 <- rlq(dudimil, coa1, duditrait, scannf = FALSE, nf = 2) 306s > set.seed(50) 306s > rd6 <- randtest(rlq1) 306s > plot(rd6) 306s > 306s > # randtest.between 306s > data(meaudret, package = "ade4") 306s > pca1 <- dudi.pca(meaudret$env, scan = FALSE, nf = 3) 306s > set.seed(50) 306s > rd7 <- randtest(bca(pca1, meaudret$design$season, scan = FALSE), 99) 306s > plot(rd7, main = "Monte-Carlo test") 306s > 306s > # randtest.discrimin 306s > set.seed(50) 306s > rd8 <- randtest(discrimin(pca1, meaudret$design$season, scan = FALSE), 99) 306s > plot(rd8, main = "Monte-Carlo test") 306s > 306s 306s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 306s Copyright (C) 2024 The R Foundation for Statistical Computing 306s Platform: aarch64-unknown-linux-gnu (64-bit) 306s 306s R is free software and comes with ABSOLUTELY NO WARRANTY. 306s You are welcome to redistribute it under certain conditions. 306s Type 'license()' or 'licence()' for distribution details. 306s 306s R is a collaborative project with many contributors. 306s Type 'contributors()' for more information and 306s 'citation()' on how to cite R or R packages in publications. 306s 306s Type 'demo()' for some demos, 'help()' for on-line help, or 306s 'help.start()' for an HTML browser interface to help. 306s Type 'q()' to quit R. 306s 307s > library(adegraphics) 307s Registered S3 methods overwritten by 'adegraphics': 307s method from 307s biplot.dudi ade4 307s kplot.foucart ade4 307s kplot.mcoa ade4 307s kplot.mfa ade4 307s kplot.pta ade4 307s kplot.sepan ade4 307s kplot.statis ade4 307s scatter.coa ade4 307s scatter.dudi ade4 307s scatter.nipals ade4 307s scatter.pco ade4 307s score.acm ade4 307s score.mix ade4 307s score.pca ade4 307s screeplot.dudi ade4 307s > pdf("s1d.label.pdf") 307s > data(meau, package= "ade4") 307s > 307s > envpca <- ade4::dudi.pca(meau$env, scannf = FALSE) 307s > 307s > g1 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1)) 307s > g2 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), p1d.hori = F) 307s > g3 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), plabels.boxes.draw = FALSE, plab.srt = 45, plabel.boxes = list(draw = FALSE)) 307s > g4 <- s1d.label(envpca$co[, 1], row.names(envpca$co), p1d.reverse = TRUE, poslabel = "value") 308s > g5 <- s1d.label(envpca$l1[, 1], row.names(envpca$l1), at = 0, plabel.cex = 0) 308s > 308s 308s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 308s Copyright (C) 2024 The R Foundation for Statistical Computing 308s Platform: aarch64-unknown-linux-gnu (64-bit) 308s 308s R is free software and comes with ABSOLUTELY NO WARRANTY. 308s You are welcome to redistribute it under certain conditions. 308s Type 'license()' or 'licence()' for distribution details. 308s 308s R is a collaborative project with many contributors. 308s Type 'contributors()' for more information and 308s 'citation()' on how to cite R or R packages in publications. 308s 308s Type 'demo()' for some demos, 'help()' for on-line help, or 308s 'help.start()' for an HTML browser interface to help. 308s Type 'q()' to quit R. 308s 308s > library(adegraphics) 308s Registered S3 methods overwritten by 'adegraphics': 308s method from 308s biplot.dudi ade4 308s kplot.foucart ade4 308s kplot.mcoa ade4 308s kplot.mfa ade4 308s kplot.pta ade4 308s kplot.sepan ade4 308s kplot.statis ade4 308s scatter.coa ade4 308s scatter.dudi ade4 308s scatter.nipals ade4 308s scatter.pco ade4 308s score.acm ade4 308s score.mix ade4 308s score.pca ade4 308s screeplot.dudi ade4 308s > pdf("s1d.match.pdf") 308s > 308s > g1 <- s1d.match(-5:5, 2 * (-5:5)) 308s > g2 <- s1d.match(rnorm(10), runif(10), p1d.hor = FALSE) 309s > g3 <- s1d.match(1:5, 7:11, p1d.hor = F, p1d.rev = T) 309s > 309s 309s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 309s Copyright (C) 2024 The R Foundation for Statistical Computing 309s Platform: aarch64-unknown-linux-gnu (64-bit) 309s 309s R is free software and comes with ABSOLUTELY NO WARRANTY. 309s You are welcome to redistribute it under certain conditions. 309s Type 'license()' or 'licence()' for distribution details. 309s 309s R is a collaborative project with many contributors. 309s Type 'contributors()' for more information and 309s 'citation()' on how to cite R or R packages in publications. 309s 309s Type 'demo()' for some demos, 'help()' for on-line help, or 309s 'help.start()' for an HTML browser interface to help. 309s Type 'q()' to quit R. 309s 309s > library(adegraphics) 309s Registered S3 methods overwritten by 'adegraphics': 309s method from 309s biplot.dudi ade4 309s kplot.foucart ade4 309s kplot.mcoa ade4 309s kplot.mfa ade4 309s kplot.pta ade4 309s kplot.sepan ade4 309s kplot.statis ade4 309s scatter.coa ade4 309s scatter.dudi ade4 309s scatter.nipals ade4 309s scatter.pco ade4 309s score.acm ade4 309s score.mix ade4 309s score.pca ade4 309s screeplot.dudi ade4 309s > pdf("table.image.pdf") 309s > 309s > ## ex1 309s > x <- 1:4 309s > y <- 1:4 309s > df <- data.frame(as.matrix(cbind(x, y))) 309s > g1 <- table.image(df, col = 2:4) 310s > update(g1, plegend.drawColorKey = TRUE) 310s > 310s > ## ex2 310s > df <- matrix(0, 10, 10) 310s > df[1:3, 1:3] <- 5 310s > g2 <- table.image(df) 310s > g3 <- table.image(df, breaks = c(5, 2, 0)) 310s > 310s > ## ex3 310s > data(rpjdl, package = "ade4") 310s > X <- data.frame(t(rpjdl$fau)) 310s > Y <- data.frame(t(rpjdl$mil)) 310s > coa1 <- ade4::dudi.coa(X, scan = FALSE) 310s > x <- rank(coa1$co[, 1]) 310s > y <- rank(coa1$li[, 1]) 310s > g4 <- table.image(Y, coordsx = x, coordsy = 1:8, axis.text = list(alpha = 0), pgrid.col = "black", pgrid.lwd = 0.8, col = c("white", "black"), plegend.drawKey = FALSE) 310s > g5 <- table.image(X, coordsx = x, coordsy = y, ptable = list(x = list(tck = 0), y = list(tck = 4)), pleg.drawKey = FALSE, labelsy = paste(" ", row.names(X), sep = "")) 310s > g6 <- ADEgS(list(g4, g5), positions = rbind(c(0, 0, 1, 0.3), c(0, 0.4, 1, 1))) 310s > 310s 310s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 310s Copyright (C) 2024 The R Foundation for Statistical Computing 310s Platform: aarch64-unknown-linux-gnu (64-bit) 310s 310s R is free software and comes with ABSOLUTELY NO WARRANTY. 310s You are welcome to redistribute it under certain conditions. 310s Type 'license()' or 'licence()' for distribution details. 310s 310s R is a collaborative project with many contributors. 310s Type 'contributors()' for more information and 310s 'citation()' on how to cite R or R packages in publications. 310s 310s Type 'demo()' for some demos, 'help()' for on-line help, or 310s 'help.start()' for an HTML browser interface to help. 310s Type 'q()' to quit R. 310s 310s > library(adegraphics) 310s Registered S3 methods overwritten by 'adegraphics': 310s method from 310s biplot.dudi ade4 310s kplot.foucart ade4 310s kplot.mcoa ade4 310s kplot.mfa ade4 310s kplot.pta ade4 310s kplot.sepan ade4 310s kplot.statis ade4 310s scatter.coa ade4 310s scatter.dudi ade4 310s scatter.nipals ade4 310s scatter.pco ade4 310s score.acm ade4 310s score.mix ade4 310s score.pca ade4 310s screeplot.dudi ade4 311s > pdf("table.value.pdf") 311s > 311s > 311s > ## ex1 311s > data(olympic, package = "ade4") 311s > tab1 <- data.frame(scale(olympic$tab)) 311s > pca <- ade4::dudi.pca(tab1, scann = FALSE) 311s > g1 <- table.value(tab1, axis.line = list(col = "blue"), axis.text = list(col = "grey")) 311s > g2 <- table.value(tab1, coordsx = c(1:5, 10:6)) 311s > g3 <- table.value(tab1, coordsx = c(1:5, 10:8)) 311s > g4 <- table.value(tab1, coordsy = rank(pca$li[, 1]), coordsx = rank(pca$co[, 1]), method = "color") 311s > g5 <- table.value(tab1, coordsy = pca$li[, 1], coordsx = pca$co[, 1], ptable = list(x = list(srt = 90))) 311s > 311s > ## ex2 311s > data(eurodist) 311s > g61 <- table.value(eurodist) 311s > g62 <- table.value(eurodist, store = TRUE, symbol = "circle") 311s > g63 <- table.value(eurodist, store = FALSE, psub.text = "eurodist", psub.position = c(0, -0.04)) 311s > g64 <- table.value(eurodist, ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 311s > g65 <- table.value(eurodist, ptable.x = list(pos = "bottom"), 311s + ptable.margin = list(b = 17, t = 17, l = 17, r = 17)) 311s > 311s > ## ex3 311s > data("doubs", package = "ade4") 311s > tab2 <- as.table(as.matrix(doubs$fish)) 311s > g8 <- table.value(tab2) 311s > 311s > ## ex4 311s > data(chats, package = "ade4") 311s > tab3 <- as.table(as.matrix(data.frame(t(chats)))) 311s > coa1 <- ade4::dudi.coa(data.frame(t(chats)), scann = FALSE) 311s > adegparold <- adegpar() 311s > adegpar(ptable = list(x = list(pos = "bottom", srt = 0), y = list(pos = "left")), plegend.drawKey = FALSE) 311s > g9 <- table.value(tab3, meanX = TRUE, ablineX = TRUE) 311s > g10 <- table.value(tab3, meanY = TRUE, ablineY = TRUE) 311s > g11 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanX = TRUE, ablineX = TRUE) 312s > g12 <- table.value(tab3, coordsx = coa1$c1[, 1], coordsy = coa1$l1[, 1], meanY = TRUE, ablineY = TRUE) 312s > g13 <- ADEgS(list(g9, g10, g11, g12), pos = rbind(c(0, 0.5, 0.5, 1), c(0.5, 0.5, 1, 1), c(0, 0, 0.5, 0.5), c(0.5, 0, 1, 0.5))) 312s > adegpar(adegparold) 312s > 312s > ## ex5 312s > data(rpjdl, package = "ade4") 312s > tab4 <- data.frame(t(rpjdl$fau)) 312s > coa2 <- ade4::dudi.coa(tab4, scann = FALSE) 312s > g14 <- table.value(tab4, coordsx = coa2$c1[, 1], coordsy = rank(coa2$l1[, 1]), axis.text = list(cex = 0), labelsy = rpjdl$lalab, plot = F) 312s > 312s > ## ex6 312s > tab5 <- as.table(matrix(rep(0, 100), 10)) 312s > tab5[1:5, 1:5] <- 10 312s > ade4::table.cont(tab5, abmean.x = T, y = 10:1) 312s > g15 <- table.value(tab5, coordsy = 10:1, meanX = T) 312s > g16 <- table.value(tab5, coordsy = 10:1, meanX = T, meanY = TRUE, ablineX = TRUE, ablineY = TRUE) 312s > 312s > ## ex7 312s > tab6 <- matrix(rep(0, 100), 10) 312s > tab6[1:5, 1:5] <- 20 312s > colnames(tab6) <- LETTERS[1:10] 312s > rownames(tab6) <- LETTERS[1:10] 312s > ade4::table.value(tab6, x = 1:10, y = 10:1) 312s > g17 <- table.value(tab6, coordsx = 1:10, coordsy = 10:1) 312s > g18 <- table.value(tab6, coordsx = 1:10, coordsy = c(1, 2, 5, 6, 8, 9, 10, 3, 4, 7)) 312s > 312s > 312s > ## ex8 312s > d <- as.dist(matrix(rep(1:5, 5), 5), upper = TRUE) 312s > attr(d, "Labels") <- c ("A", "B", "C", "D", "E") 312s > g4 <- table.value(d) 312s > 312s > ## ex9 312s > data(irishdata, package = "ade4") 312s > d.geo <- dist(irishdata$xy.utm) 312s > g5 <- table.value(d.geo) 312s > 312s 312s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 312s Copyright (C) 2024 The R Foundation for Statistical Computing 312s Platform: aarch64-unknown-linux-gnu (64-bit) 312s 312s R is free software and comes with ABSOLUTELY NO WARRANTY. 312s You are welcome to redistribute it under certain conditions. 312s Type 'license()' or 'licence()' for distribution details. 312s 312s R is a collaborative project with many contributors. 312s Type 'contributors()' for more information and 312s 'citation()' on how to cite R or R packages in publications. 312s 312s Type 'demo()' for some demos, 'help()' for on-line help, or 312s 'help.start()' for an HTML browser interface to help. 312s Type 'q()' to quit R. 312s 312s > library(adegraphics) 313s Registered S3 methods overwritten by 'adegraphics': 313s method from 313s biplot.dudi ade4 313s kplot.foucart ade4 313s kplot.mcoa ade4 313s kplot.mfa ade4 313s kplot.pta ade4 313s kplot.sepan ade4 313s kplot.statis ade4 313s scatter.coa ade4 313s scatter.dudi ade4 313s scatter.nipals ade4 313s scatter.pco ade4 313s score.acm ade4 313s score.mix ade4 313s score.pca ade4 313s screeplot.dudi ade4 313s > pdf("triangle.pdf") 313s > 313s > ## ex1 313s > data(euro123, package = "ade4") 313s > 313s > dfxyz1 <- rbind.data.frame(euro123$in78, euro123$in86, euro123$in97) 313s > row.names(dfxyz1) <- paste(row.names(euro123$in78), rep(c(1, 2, 3), rep(12, 3)), sep = "") 313s > g1 <- triangle.label(dfxyz1, label = row.names(dfxyz1)) 313s > g2 <- triangle.label(euro123$in86, label = row.names(euro123$in78), plab.cex = 0.8) 313s > g3 <- triangle.match(euro123$in78, euro123$in86) 313s > g4 <- triangle.label(rbind.data.frame(euro123$in78, euro123$in86), plab.cex = 1, addaxes = TRUE, psub = list(text = "Principal axis", cex = 2, pos = "topright")) 313s > g5 <- triangle.label(euro123[[1]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), plabels.cex = 1, label = row.names(euro123[[1]]), addax = TRUE) 314s > g6 <- triangle.label(euro123[[2]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 314s > g7 <- triangle.label(euro123[[3]], min3 = c(0, 0.2, 0.3), max3 = c(0.5, 0.7, 0.8), label = row.names(euro123[[1]]), addax = TRUE) 314s > g8 <- triangle.label(rbind.data.frame(euro123[[1]], euro123[[2]], euro123[[3]])) 314s > 314s > ## ex2 314s > dfxyz2 <- cbind.data.frame(a = runif(100), b = runif(100), c = runif(100, 4, 5)) 314s > g9 <- triangle.label(dfxyz2) 314s > 314s > ## ex3 314s > g10 <- triangle.label(dfxyz1) 314s > g11 <- triangle.class(dfxyz1, as.factor(rep("G", 36)), star = 0.5, ellips = 1) 314s > g12 <- triangle.class(dfxyz1, euro123$plan$an) 314s > g13 <- triangle.class(dfxyz1, euro123$plan$pays) 314s > g14 <- triangle.class(dfxyz1, euro123$plan$an, elli = 1, pell.axe.draw = TRUE) 315s > g15 <- triangle.class(dfxyz1, euro123$plan$an, elli = 0, sta = 0, col = c("red", "green", "blue"), pell.axe.draw = TRUE, plab.cex = 2, ppoi.cex = 2, pell.axe.draw = TRUE) 315s > g16 <- triangle.class(dfxyz1, euro123$plan$an, ell = 2, sta = 0.5, pell.axe.draw = TRUE, plab.cex = 1.5) 315s > g17 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, adjust = FALSE) 315s > g18 <- triangle.class(dfxyz1, euro123$plan$an, ell = 0, sta = 1, chull =c(0.2, 0.25, 0.5, 0.75, 1), adjust = TRUE, showposi = TRUE, col = 10:13, pgrid.draw = FALSE) 315s > 316s autopkgtest [17:54:12]: test run-unit-test: -----------------------] 316s run-unit-test PASS 316s autopkgtest [17:54:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 317s autopkgtest [17:54:13]: test pkg-r-autopkgtest: preparing testbed 318s Reading package lists... 318s Building dependency tree... 318s Reading state information... 319s Starting pkgProblemResolver with broken count: 0 319s Starting 2 pkgProblemResolver with broken count: 0 319s Done 319s The following additional packages will be installed: 319s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 319s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 319s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 319s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 319s libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 319s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 319s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 319s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 319s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 319s libstdc++-13-dev libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config 319s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 319s Suggested packages: 319s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 319s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 319s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 319s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 319s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 319s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 319s texlive-latex-recommended texlive-latex-extra texinfo 319s Recommended packages: 319s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 319s The following NEW packages will be installed: 319s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 319s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 319s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 319s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 319s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 319s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev 319s libgfortran-13-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 319s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 319s libncurses-dev libnsl-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 319s libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libstdc++-13-dev 319s libtirpc-dev libtsan2 libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest 319s pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 320s 0 upgraded, 62 newly installed, 0 to remove and 0 not upgraded. 320s Need to get 92.8 MB/92.8 MB of archives. 320s After this operation, 343 MB of additional disk space will be used. 320s Get:1 /tmp/autopkgtest.roglPs/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 320s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 320s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 320s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 320s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 320s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 320s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 320s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 320s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 320s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 320s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 320s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 320s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 320s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 320s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 320s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 320s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 320s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 321s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 321s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 321s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 321s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 321s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 321s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 321s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 321s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 321s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 321s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 321s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 322s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 322s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 322s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 322s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 322s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 322s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 322s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 322s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 322s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 322s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 322s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 322s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 322s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 322s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 322s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 322s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 322s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 322s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 322s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 322s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 322s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 322s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 322s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 322s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 322s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 322s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 322s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 322s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 322s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 322s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 322s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 322s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 322s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 323s Fetched 92.8 MB in 3s (32.2 MB/s) 324s Selecting previously unselected package libc-dev-bin. 324s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 100754 files and directories currently installed.) 324s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 324s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 324s Selecting previously unselected package linux-libc-dev:arm64. 324s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_arm64.deb ... 324s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 324s Selecting previously unselected package libcrypt-dev:arm64. 324s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 324s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 325s Selecting previously unselected package libtirpc-dev:arm64. 325s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 325s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 325s Selecting previously unselected package libnsl-dev:arm64. 325s Preparing to unpack .../04-libnsl-dev_1.3.0-3_arm64.deb ... 325s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 325s Selecting previously unselected package rpcsvc-proto. 325s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 325s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 325s Selecting previously unselected package libc6-dev:arm64. 325s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_arm64.deb ... 325s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 325s Selecting previously unselected package libisl23:arm64. 325s Preparing to unpack .../07-libisl23_0.26-3_arm64.deb ... 325s Unpacking libisl23:arm64 (0.26-3) ... 325s Selecting previously unselected package libmpc3:arm64. 325s Preparing to unpack .../08-libmpc3_1.3.1-1_arm64.deb ... 325s Unpacking libmpc3:arm64 (1.3.1-1) ... 325s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 325s Preparing to unpack .../09-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 325s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 326s Selecting previously unselected package cpp-13. 326s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 326s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 326s Selecting previously unselected package cpp-aarch64-linux-gnu. 326s Preparing to unpack .../11-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 326s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 326s Selecting previously unselected package cpp. 326s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 326s Unpacking cpp (4:13.2.0-7ubuntu1) ... 326s Selecting previously unselected package libcc1-0:arm64. 326s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libitm1:arm64. 326s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libatomic1:arm64. 326s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libasan8:arm64. 326s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package liblsan0:arm64. 326s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libtsan2:arm64. 326s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libubsan1:arm64. 326s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libhwasan0:arm64. 326s Preparing to unpack .../20-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 326s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 326s Selecting previously unselected package libgcc-13-dev:arm64. 326s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 326s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 327s Preparing to unpack .../22-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 327s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gcc-13. 327s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 327s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gcc-aarch64-linux-gnu. 327s Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 327s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 327s Selecting previously unselected package gcc. 327s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 327s Unpacking gcc (4:13.2.0-7ubuntu1) ... 327s Selecting previously unselected package libstdc++-13-dev:arm64. 327s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 327s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package g++-13-aarch64-linux-gnu. 327s Preparing to unpack .../27-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 327s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 328s Selecting previously unselected package g++-13. 328s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_arm64.deb ... 328s Unpacking g++-13 (13.2.0-17ubuntu2) ... 328s Selecting previously unselected package g++-aarch64-linux-gnu. 328s Preparing to unpack .../29-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 328s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 328s Selecting previously unselected package g++. 328s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 328s Unpacking g++ (4:13.2.0-7ubuntu1) ... 328s Selecting previously unselected package build-essential. 328s Preparing to unpack .../31-build-essential_12.10ubuntu1_arm64.deb ... 328s Unpacking build-essential (12.10ubuntu1) ... 328s Selecting previously unselected package dctrl-tools. 328s Preparing to unpack .../32-dctrl-tools_2.24-3build2_arm64.deb ... 328s Unpacking dctrl-tools (2.24-3build2) ... 328s Selecting previously unselected package libgfortran-13-dev:arm64. 328s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 328s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 328s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 328s Preparing to unpack .../34-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 328s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 328s Selecting previously unselected package gfortran-13. 328s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 328s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 328s Selecting previously unselected package gfortran-aarch64-linux-gnu. 328s Preparing to unpack .../36-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 328s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 328s Selecting previously unselected package gfortran. 328s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 328s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 328s Selecting previously unselected package icu-devtools. 328s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_arm64.deb ... 328s Unpacking icu-devtools (74.2-1ubuntu1) ... 328s Selecting previously unselected package libblas-dev:arm64. 328s Preparing to unpack .../39-libblas-dev_3.12.0-3_arm64.deb ... 328s Unpacking libblas-dev:arm64 (3.12.0-3) ... 328s Selecting previously unselected package libbz2-dev:arm64. 328s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 328s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 328s Selecting previously unselected package libicu-dev:arm64. 328s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_arm64.deb ... 328s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 329s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 329s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 329s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 329s Selecting previously unselected package libjpeg8-dev:arm64. 329s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 329s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 329s Selecting previously unselected package libjpeg-dev:arm64. 329s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 329s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 329s Selecting previously unselected package liblapack-dev:arm64. 329s Preparing to unpack .../45-liblapack-dev_3.12.0-3_arm64.deb ... 329s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 329s Selecting previously unselected package libncurses-dev:arm64. 329s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 329s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 329s Selecting previously unselected package libpcre2-16-0:arm64. 329s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 329s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 329s Selecting previously unselected package libpcre2-32-0:arm64. 329s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 329s Unpacking 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Unpacking r-base-dev (4.3.3-2build1) ... 330s Selecting previously unselected package pkg-r-autopkgtest. 330s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 330s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 330s Selecting previously unselected package autopkgtest-satdep. 330s Preparing to unpack .../61-2-autopkgtest-satdep.deb ... 330s Unpacking autopkgtest-satdep (0) ... 330s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 330s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 330s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 330s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 330s Setting up libpkgconf3:arm64 (1.8.1-2) ... 330s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 330s Setting up libmpc3:arm64 (1.3.1-1) ... 330s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 330s Setting up icu-devtools (74.2-1ubuntu1) ... 330s Setting up pkgconf-bin (1.8.1-2) ... 330s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 330s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 330s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 330s Setting up libnsl-dev:arm64 (1.3.0-3) ... 330s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 330s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 330s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 330s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 330s Setting up libisl23:arm64 (0.26-3) ... 330s Setting up libc-dev-bin (2.39-0ubuntu2) ... 330s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 330s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 330s Setting up libblas-dev:arm64 (3.12.0-3) ... 330s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 330s Setting up dctrl-tools (2.24-3build2) ... 330s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 330s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 330s Setting up pkgconf:arm64 (1.8.1-2) ... 330s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 330s Setting up liblapack-dev:arm64 (3.12.0-3) ... 330s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 330s Setting up pkg-config:arm64 (1.8.1-2) ... 330s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 330s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 330s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 330s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 330s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 330s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 330s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 330s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 330s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 330s Setting up cpp-13 (13.2.0-17ubuntu2) ... 330s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 330s Setting up libreadline-dev:arm64 (8.2-3.1) ... 330s Setting up gcc-13 (13.2.0-17ubuntu2) ... 330s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 330s Setting up cpp (4:13.2.0-7ubuntu1) ... 330s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 330s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 330s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 330s Setting up g++-13 (13.2.0-17ubuntu2) ... 330s Setting up libpng-dev:arm64 (1.6.43-3) ... 330s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 330s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 330s Setting up gcc (4:13.2.0-7ubuntu1) ... 330s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 330s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 330s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 330s Setting up gfortran (4:13.2.0-7ubuntu1) ... 330s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 330s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 330s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 330s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 330s Setting up g++ (4:13.2.0-7ubuntu1) ... 330s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 330s Setting up build-essential (12.10ubuntu1) ... 330s Setting up r-base-dev (4.3.3-2build1) ... 330s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 330s Setting up autopkgtest-satdep (0) ... 330s Processing triggers for man-db (2.12.0-3) ... 331s Processing triggers for install-info (7.1-3) ... 331s Processing triggers for libc-bin (2.39-0ubuntu2) ... 336s (Reading database ... 104313 files and directories currently installed.) 336s Removing autopkgtest-satdep (0) ... 337s autopkgtest [17:54:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 337s autopkgtest [17:54:33]: test pkg-r-autopkgtest: [----------------------- 337s Test: Try to load the R library adegraphics 338s 338s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 338s Copyright (C) 2024 The R Foundation for Statistical Computing 338s Platform: aarch64-unknown-linux-gnu (64-bit) 338s 338s R is free software and comes with ABSOLUTELY NO WARRANTY. 338s You are welcome to redistribute it under certain conditions. 338s Type 'license()' or 'licence()' for distribution details. 338s 338s R is a collaborative project with many contributors. 338s Type 'contributors()' for more information and 338s 'citation()' on how to cite R or R packages in publications. 338s 338s Type 'demo()' for some demos, 'help()' for on-line help, or 338s 'help.start()' for an HTML browser interface to help. 338s Type 'q()' to quit R. 338s 338s > library('adegraphics') 338s Registered S3 methods overwritten by 'adegraphics': 338s method from 338s biplot.dudi ade4 338s kplot.foucart ade4 338s kplot.mcoa ade4 338s kplot.mfa ade4 338s kplot.pta ade4 338s kplot.sepan ade4 338s kplot.statis ade4 338s scatter.coa ade4 338s scatter.dudi ade4 338s scatter.nipals ade4 338s scatter.pco ade4 338s score.acm ade4 338s score.mix ade4 338s score.pca ade4 338s screeplot.dudi ade4 339s > 339s > 339s Other tests are currently unsupported! 339s They will be progressively added. 339s autopkgtest [17:54:35]: test pkg-r-autopkgtest: -----------------------] 339s pkg-r-autopkgtest PASS 339s autopkgtest [17:54:35]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 340s autopkgtest [17:54:36]: @@@@@@@@@@@@@@@@@@@@ summary 340s run-unit-test PASS 340s pkg-r-autopkgtest PASS 351s Creating nova instance adt-noble-arm64-r-cran-adegraphics-20240316-174856-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...