0s autopkgtest [17:48:47]: starting date and time: 2024-03-16 17:48:47+0000 0s autopkgtest [17:48:47]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:48:47]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3j56enit/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-cran-adegenet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-arm64-8.secgroup --name adt-noble-arm64-r-cran-adegenet-20240316-174847-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 163s autopkgtest [17:51:30]: testbed dpkg architecture: arm64 164s autopkgtest [17:51:31]: testbed apt version: 2.7.12 164s autopkgtest [17:51:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 165s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 166s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 167s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 167s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 167s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 167s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 167s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 167s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 167s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 167s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 167s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 167s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 167s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 178s Fetched 9060 kB in 5s (1671 kB/s) 179s Reading package lists... 186s Reading package lists... 186s Building dependency tree... 187s Reading state information... 189s Calculating upgrade... 191s The following packages will be REMOVED: 191s libglib2.0-0 libssl3 191s The following NEW packages will be installed: 191s libglib2.0-0t64 libssl3t64 xdg-user-dirs 191s The following packages have been kept back: 191s curl 191s The following packages will be upgraded: 191s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 191s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 191s Need to get 4592 kB of archives. 191s After this operation, 211 kB of additional disk space will be used. 191s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 191s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 192s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 192s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 192s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 192s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 192s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 192s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 194s Fetched 4592 kB in 1s (4886 kB/s) 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 194s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 194s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 195s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 195s udisks2 depends on libglib2.0-0 (>= 2.77.0). 195s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 195s python3-gi depends on libglib2.0-0 (>= 2.77.0). 195s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 195s netplan.io depends on libglib2.0-0 (>= 2.70.0). 195s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 195s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 195s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 195s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 195s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 195s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 195s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 195s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 195s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 195s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 195s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 195s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 195s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 195s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 195s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 195s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 195s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 195s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 195s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 195s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 195s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 195s fwupd depends on libglib2.0-0 (>= 2.79.0). 195s bolt depends on libglib2.0-0 (>= 2.56.0). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 195s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 195s Selecting previously unselected package libglib2.0-0t64:arm64. 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 196s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 196s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 196s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 196s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 196s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 196s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 197s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 197s wget depends on libssl3 (>= 3.0.0). 197s u-boot-tools depends on libssl3 (>= 3.0.0). 197s tnftp depends on libssl3 (>= 3.0.0). 197s tcpdump depends on libssl3 (>= 3.0.0). 197s systemd-resolved depends on libssl3 (>= 3.0.0). 197s systemd depends on libssl3 (>= 3.0.0). 197s sudo depends on libssl3 (>= 3.0.0). 197s sbsigntool depends on libssl3 (>= 3.0.0). 197s rsync depends on libssl3 (>= 3.0.0). 197s python3-cryptography depends on libssl3 (>= 3.0.0). 197s openssh-server depends on libssl3 (>= 3.0.10). 197s openssh-client depends on libssl3 (>= 3.0.10). 197s mtd-utils depends on libssl3 (>= 3.0.0). 197s mokutil depends on libssl3 (>= 3.0.0). 197s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 197s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 197s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 197s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 197s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 197s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 197s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 197s libnvme1 depends on libssl3 (>= 3.0.0). 197s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 197s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 197s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 197s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 197s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 197s kmod depends on libssl3 (>= 3.0.0). 197s dhcpcd-base depends on libssl3 (>= 3.0.0). 197s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 197s 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 197s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 197s Selecting previously unselected package libssl3t64:arm64. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 198s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 198s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 198s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 198s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 198s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 198s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 199s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 199s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 199s Selecting previously unselected package xdg-user-dirs. 199s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 199s Unpacking xdg-user-dirs (0.18-1) ... 199s Setting up xdg-user-dirs (0.18-1) ... 199s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 199s Setting up libtirpc-common (1.3.4+ds-1.1) ... 199s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 199s No schema files found: doing nothing. 199s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 199s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 199s Setting up openssl (3.0.13-0ubuntu1) ... 199s Setting up readline-common (8.2-3.1) ... 199s Processing triggers for man-db (2.12.0-3) ... 205s Processing triggers for install-info (7.1-3) ... 205s Processing triggers for libc-bin (2.39-0ubuntu2) ... 206s Reading package lists... 207s Building dependency tree... 207s Reading state information... 210s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 213s sh: Attempting to set up Debian/Ubuntu apt sources automatically 213s sh: Distribution appears to be Ubuntu 217s Reading package lists... 218s Building dependency tree... 218s Reading state information... 221s eatmydata is already the newest version (131-1). 221s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 224s dbus is already the newest version (1.14.10-4ubuntu1). 224s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 224s Reading package lists... 225s Building dependency tree... 225s Reading state information... 229s rng-tools-debian is already the newest version (2.4). 229s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 229s Reading package lists... 230s Building dependency tree... 230s Reading state information... 233s The following packages will be REMOVED: 233s cloud-init* python3-configobj* python3-debconf* 234s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 234s After this operation, 3252 kB disk space will be freed. 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 235s Removing cloud-init (24.1.1-0ubuntu1) ... 239s Removing python3-configobj (5.0.8-3) ... 239s Removing python3-debconf (1.5.86) ... 239s Processing triggers for man-db (2.12.0-3) ... 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75477 files and directories currently installed.) 241s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 244s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 244s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 244s invoke-rc.d: policy-rc.d denied execution of try-restart. 244s Reading package lists... 245s Building dependency tree... 245s Reading state information... 247s linux-generic is already the newest version (6.8.0-11.11+1). 247s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 248s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 248s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 248s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 259s Reading package lists... 259s Reading package lists... 260s Building dependency tree... 260s Reading state information... 261s Calculating upgrade... 263s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 266s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 266s autopkgtest [17:53:13]: rebooting testbed after setup commands that affected boot 446s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 471s autopkgtest [17:56:38]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 478s autopkgtest [17:56:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegenet 485s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegenet 2.1.10-1 (dsc) [2280 B] 485s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegenet 2.1.10-1 (tar) [1701 kB] 485s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-adegenet 2.1.10-1 (diff) [4872 B] 487s gpgv: Signature made Mon Jan 30 12:39:21 2023 UTC 487s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 487s gpgv: issuer "tille@debian.org" 487s gpgv: Can't check signature: No public key 487s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegenet_2.1.10-1.dsc: no acceptable signature found 488s autopkgtest [17:56:55]: testing package r-cran-adegenet version 2.1.10-1 488s autopkgtest [17:56:55]: build not needed 491s autopkgtest [17:56:58]: test run-unit-test: preparing testbed 494s Reading package lists... 495s Building dependency tree... 495s Reading state information... 497s Starting pkgProblemResolver with broken count: 0 498s Starting 2 pkgProblemResolver with broken count: 0 498s Done 501s The following additional packages will be installed: 501s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 501s fonts-font-awesome fonts-glyphicons-halflings javascript-common libblas3 501s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 501s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 501s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 501s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 501s libjs-jquery-ui libjs-json libjs-microplugin.js libjs-popper.js 501s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblerc4 501s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 501s libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 501s libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 501s libxss1 libxt6 littler node-bootstrap-sass node-html5shiv node-normalize.css 501s r-base-core r-cran-ade4 r-cran-adegenet r-cran-ape r-cran-base64enc 501s r-cran-boot r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 501s r-cran-cluster r-cran-colorspace r-cran-commonmark r-cran-cpp11 501s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 501s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 501s r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue 501s r-cran-gtable r-cran-htmltools r-cran-httpuv r-cran-igraph r-cran-isoband 501s r-cran-jquerylib r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice 501s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 501s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 501s r-cran-permute r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 501s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 501s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 501s r-cran-rcpp r-cran-rcpparmadillo r-cran-rematch2 r-cran-reshape2 501s r-cran-rlang r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented 501s r-cran-seqinr r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi 501s r-cran-stringr r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 501s r-cran-vctrs r-cran-vegan r-cran-viridislite r-cran-waldo r-cran-withr 501s r-cran-xtable unzip x11-common xdg-utils zip 501s Suggested packages: 501s apache2 | lighttpd | httpd libjs-jquery-ui-docs tcl8.6 tk8.6 nodejs elpa-ess 501s r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-adegraphics 501s r-cran-adephylo r-cran-deldir r-cran-spdep r-cran-waveslim r-cran-progress 501s r-cran-foreach r-cran-doparallel r-cran-iterators r-cran-maps r-cran-interp 501s r-cran-gee r-cran-expm clustalw muscle phyml t-coffee r-cran-covr 501s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 501s r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-knitr r-cran-rmarkdown 501s r-cran-viridis r-cran-rstudioapi r-cran-magick r-cran-sf r-cran-getopt 501s r-cran-httr r-cran-bookdown r-cran-sessioninfo r-cran-bit64 r-cran-dbi 501s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 501s r-cran-units r-cran-vdiffr r-cran-roxygen2 r-cran-inline r-cran-bench 501s r-cran-blob r-cran-here r-cran-hms r-cran-purrr r-cran-tidyr r-cran-markdown 501s r-cran-plm r-cran-zoo 501s Recommended packages: 501s node-jquery r-recommended r-base-dev r-doc-html r-cran-phangorn r-cran-covr 501s r-cran-curl r-cran-knitr r-cran-rmarkdown r-cran-thematic r-cran-cliapp 501s r-cran-mockery r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami 501s r-cran-xml2 r-cran-bench r-cran-decor r-cran-lobstr r-cran-progress 501s r-cran-gh r-cran-spelling r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-purrr 501s r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-tidyr r-cran-unitizer 501s r-cran-rsvg r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps 501s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart 501s r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown 501s r-bioc-graph r-cran-rgl r-cran-httr r-cran-r.rsp r-cran-lintr 501s r-cran-tidyverse r-cran-lubridate r-cran-bitops r-cran-mathjaxr r-cran-mockr 501s r-cran-remotes r-cran-abind r-cran-doparallel r-cran-foreach 501s r-cran-iterators r-cran-itertools r-cran-codetools r-cran-webfakes 501s r-cran-future r-cran-pingr r-cran-usethis r-cran-bit64 r-cran-dichromat 501s r-cran-hms r-cran-yaml r-cran-dygraphs r-cran-gstat r-cran-deldir 501s r-cran-terra r-cran-raster r-cran-data.table r-cran-formattable 501s r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl 501s libx11-protocol-perl x11-utils x11-xserver-utils 501s The following NEW packages will be installed: 501s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 501s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 501s javascript-common libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 501s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 501s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 501s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 501s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js 501s libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker 501s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 501s libpaper-utils libpaper1 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 501s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 501s libxft2 libxrender1 libxss1 libxt6 littler node-bootstrap-sass 501s node-html5shiv node-normalize.css r-base-core r-cran-ade4 r-cran-adegenet 501s r-cran-ape r-cran-base64enc r-cran-boot r-cran-brio r-cran-bslib 501s r-cran-cachem r-cran-callr r-cran-cli r-cran-cluster r-cran-colorspace 501s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc r-cran-diffobj 501s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 501s r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics 501s r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-htmltools r-cran-httpuv 501s r-cran-igraph r-cran-isoband r-cran-jquerylib r-cran-jsonlite 501s r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 501s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv 501s r-cran-mime r-cran-munsell r-cran-nlme r-cran-permute r-cran-pillar 501s r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 501s r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx r-cran-promises 501s r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 501s r-cran-rcpparmadillo r-cran-rematch2 r-cran-reshape2 r-cran-rlang 501s r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr 501s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr 501s r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs 501s r-cran-vegan r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xtable 501s unzip x11-common xdg-utils zip 501s 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. 501s Need to get 121 MB/121 MB of archives. 501s After this operation, 238 MB of additional disk space will be used. 501s Get:1 /tmp/autopkgtest.ll11y5/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 502s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 502s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 502s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 502s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 502s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 503s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 503s Get:8 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 503s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 503s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 503s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 503s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 503s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 503s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 503s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 503s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 503s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 503s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 503s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 503s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 503s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 503s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 503s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 503s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 503s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 503s Get:26 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 503s Get:27 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 503s Get:28 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 503s Get:29 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 504s Get:30 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 504s Get:31 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 504s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 504s Get:33 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 504s Get:34 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 504s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 504s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 504s Get:37 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 504s Get:38 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 504s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 504s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 504s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 504s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 504s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 504s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 504s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 504s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 504s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 504s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 504s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 504s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 505s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 505s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 505s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 505s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 505s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 505s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 505s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 505s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 505s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 505s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 505s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 508s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 508s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 508s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 508s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 508s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 508s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 508s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pixmap all 0.4-12-1 [201 kB] 508s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 508s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 509s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 509s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 509s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 509s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ade4 arm64 1.7-22-1 [5324 kB] 510s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 510s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 510s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 510s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 510s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 510s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 510s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 510s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 510s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-igraph arm64 1.6.0-1 [4329 kB] 510s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 510s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 510s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ape arm64 5.7-1-1 [2879 kB] 511s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 511s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 511s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 511s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 511s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 511s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 511s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 511s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 511s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 511s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 511s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 511s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 511s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 511s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 511s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 511s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 511s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 511s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 511s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 511s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 512s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 512s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 512s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 513s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 513s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 513s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 513s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 513s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 513s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 513s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 513s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 513s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 513s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 513s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 513s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 514s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 514s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 514s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 514s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 514s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 514s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 514s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-segmented all 2.0-3-1 [1252 kB] 515s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-seqinr arm64 4.2-36-1 [4013 kB] 515s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB] 515s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 515s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 515s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 515s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 515s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 515s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 515s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 515s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-permute all 0.9-7-1 [228 kB] 515s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 515s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vegan arm64 2.6-4+dfsg-1 [3088 kB] 516s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-adegenet arm64 2.1.10-1 [2708 kB] 516s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 516s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 516s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 516s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 516s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 516s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 516s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 516s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 516s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 516s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 516s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 516s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 516s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 516s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 519s Preconfiguring packages ... 519s Fetched 121 MB in 15s (8174 kB/s) 520s Selecting previously unselected package fonts-dejavu-mono. 522s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75422 files and directories currently installed.) 522s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 522s Unpacking fonts-dejavu-mono (2.37-8) ... 522s Selecting previously unselected package fonts-dejavu-core. 522s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 523s Unpacking fonts-dejavu-core (2.37-8) ... 523s Selecting previously unselected package fontconfig-config. 523s Preparing to unpack .../002-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 526s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 526s Selecting previously unselected package libfontconfig1:arm64. 526s Preparing to unpack .../003-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 526s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 527s Selecting previously unselected package fontconfig. 527s Preparing to unpack .../004-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 527s Unpacking fontconfig (2.15.0-1ubuntu1) ... 527s Selecting previously unselected package fonts-font-awesome. 528s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 528s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 528s Selecting previously unselected package fonts-glyphicons-halflings. 528s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 528s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 528s Selecting previously unselected package javascript-common. 528s Preparing to unpack .../007-javascript-common_11+nmu1_all.deb ... 528s Unpacking javascript-common (11+nmu1) ... 529s Selecting previously unselected package libblas3:arm64. 529s Preparing to unpack .../008-libblas3_3.12.0-3_arm64.deb ... 529s Unpacking libblas3:arm64 (3.12.0-3) ... 529s Selecting previously unselected package libpixman-1-0:arm64. 529s Preparing to unpack .../009-libpixman-1-0_0.42.2-1_arm64.deb ... 529s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 529s Selecting previously unselected package libxcb-render0:arm64. 529s Preparing to unpack .../010-libxcb-render0_1.15-1_arm64.deb ... 529s Unpacking libxcb-render0:arm64 (1.15-1) ... 529s Selecting previously unselected package libxcb-shm0:arm64. 529s Preparing to unpack .../011-libxcb-shm0_1.15-1_arm64.deb ... 529s Unpacking libxcb-shm0:arm64 (1.15-1) ... 529s Selecting previously unselected package libxrender1:arm64. 529s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 529s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 529s Selecting previously unselected package libcairo2:arm64. 529s Preparing to unpack .../013-libcairo2_1.18.0-1_arm64.deb ... 529s Unpacking libcairo2:arm64 (1.18.0-1) ... 529s Selecting previously unselected package libdatrie1:arm64. 529s Preparing to unpack .../014-libdatrie1_0.2.13-3_arm64.deb ... 529s Unpacking libdatrie1:arm64 (0.2.13-3) ... 530s Selecting previously unselected package libdeflate0:arm64. 530s Preparing to unpack .../015-libdeflate0_1.19-1_arm64.deb ... 530s Unpacking libdeflate0:arm64 (1.19-1) ... 530s Selecting previously unselected package libgfortran5:arm64. 530s Preparing to unpack .../016-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 530s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 530s Selecting previously unselected package libgomp1:arm64. 531s Preparing to unpack .../017-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 531s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 531s Selecting previously unselected package libgraphite2-3:arm64. 531s Preparing to unpack .../018-libgraphite2-3_1.3.14-2_arm64.deb ... 531s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 531s Selecting previously unselected package libharfbuzz0b:arm64. 531s Preparing to unpack .../019-libharfbuzz0b_8.3.0-2_arm64.deb ... 531s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 531s Selecting previously unselected package x11-common. 531s Preparing to unpack .../020-x11-common_1%3a7.7+23ubuntu2_all.deb ... 531s Unpacking x11-common (1:7.7+23ubuntu2) ... 531s Selecting previously unselected package libice6:arm64. 531s Preparing to unpack .../021-libice6_2%3a1.0.10-1build2_arm64.deb ... 531s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 531s Selecting previously unselected package libjpeg-turbo8:arm64. 531s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 531s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 532s Selecting previously unselected package libjpeg8:arm64. 532s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_arm64.deb ... 532s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 532s Selecting previously unselected package libjs-bootstrap. 532s Preparing to unpack .../024-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 532s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 532s Selecting previously unselected package libjs-popper.js. 532s Preparing to unpack .../025-libjs-popper.js_1.16.1+ds-6_all.deb ... 532s Unpacking libjs-popper.js (1.16.1+ds-6) ... 532s Selecting previously unselected package libjs-bootstrap4. 532s Preparing to unpack .../026-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 532s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 533s Selecting previously unselected package libjs-d3. 533s Preparing to unpack .../027-libjs-d3_3.5.17-4_all.deb ... 533s Unpacking libjs-d3 (3.5.17-4) ... 533s Selecting previously unselected package libjs-es5-shim. 533s Preparing to unpack .../028-libjs-es5-shim_4.6.7-2_all.deb ... 533s Unpacking libjs-es5-shim (4.6.7-2) ... 533s Selecting previously unselected package libjs-highlight.js. 533s Preparing to unpack .../029-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 533s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 533s Selecting previously unselected package libjs-jquery. 533s Preparing to unpack .../030-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 533s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 533s Selecting previously unselected package libjs-jquery-datatables. 533s Preparing to unpack .../031-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 533s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 533s Selecting previously unselected package libjs-sifter.js. 534s Preparing to unpack .../032-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 534s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 534s Selecting previously unselected package libjs-microplugin.js. 534s Preparing to unpack .../033-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 534s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 534s Selecting previously unselected package libjs-jquery-selectize.js. 534s Preparing to unpack .../034-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 534s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 534s Selecting previously unselected package libjs-jquery-ui. 534s Preparing to unpack .../035-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 534s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 534s Selecting previously unselected package libjs-json. 534s Preparing to unpack .../036-libjs-json_0~20221030+~1.0.8-1_all.deb ... 534s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 534s Selecting previously unselected package liblapack3:arm64. 534s Preparing to unpack .../037-liblapack3_3.12.0-3_arm64.deb ... 534s Unpacking liblapack3:arm64 (3.12.0-3) ... 535s Selecting previously unselected package liblerc4:arm64. 535s Preparing to unpack .../038-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 535s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 535s Selecting previously unselected package libthai-data. 535s Preparing to unpack .../039-libthai-data_0.1.29-2_all.deb ... 535s Unpacking libthai-data (0.1.29-2) ... 535s Selecting previously unselected package libthai0:arm64. 535s Preparing to unpack .../040-libthai0_0.1.29-2_arm64.deb ... 535s Unpacking libthai0:arm64 (0.1.29-2) ... 535s Selecting previously unselected package libpango-1.0-0:arm64. 535s Preparing to unpack .../041-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 535s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 535s Selecting previously unselected package libpangoft2-1.0-0:arm64. 535s Preparing to unpack .../042-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 535s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 536s Selecting previously unselected package libpangocairo-1.0-0:arm64. 536s Preparing to unpack .../043-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 536s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 536s Selecting previously unselected package libpaper1:arm64. 536s Preparing to unpack .../044-libpaper1_1.1.29_arm64.deb ... 536s Unpacking libpaper1:arm64 (1.1.29) ... 536s Selecting previously unselected package libpaper-utils. 536s Preparing to unpack .../045-libpaper-utils_1.1.29_arm64.deb ... 536s Unpacking libpaper-utils (1.1.29) ... 536s Selecting previously unselected package libsharpyuv0:arm64. 536s Preparing to unpack .../046-libsharpyuv0_1.3.2-0.4_arm64.deb ... 536s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 536s Selecting previously unselected package libsm6:arm64. 536s Preparing to unpack .../047-libsm6_2%3a1.2.3-1build2_arm64.deb ... 536s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 536s Selecting previously unselected package libtcl8.6:arm64. 536s Preparing to unpack .../048-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 536s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 537s Selecting previously unselected package libjbig0:arm64. 537s Preparing to unpack .../049-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 537s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 537s Selecting previously unselected package libwebp7:arm64. 537s Preparing to unpack .../050-libwebp7_1.3.2-0.4_arm64.deb ... 537s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 537s Selecting previously unselected package libtiff6:arm64. 537s Preparing to unpack .../051-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 537s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 537s Selecting previously unselected package libxft2:arm64. 537s Preparing to unpack .../052-libxft2_2.3.6-1_arm64.deb ... 537s Unpacking libxft2:arm64 (2.3.6-1) ... 538s Selecting previously unselected package libxss1:arm64. 538s Preparing to unpack .../053-libxss1_1%3a1.2.3-1build2_arm64.deb ... 538s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 538s Selecting previously unselected package libtk8.6:arm64. 538s Preparing to unpack .../054-libtk8.6_8.6.13-2_arm64.deb ... 538s Unpacking libtk8.6:arm64 (8.6.13-2) ... 538s Selecting previously unselected package libxt6:arm64. 538s Preparing to unpack .../055-libxt6_1%3a1.2.1-1.1_arm64.deb ... 538s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 538s Selecting previously unselected package zip. 538s Preparing to unpack .../056-zip_3.0-13_arm64.deb ... 538s Unpacking zip (3.0-13) ... 538s Selecting previously unselected package unzip. 538s Preparing to unpack .../057-unzip_6.0-28ubuntu3_arm64.deb ... 538s Unpacking unzip (6.0-28ubuntu3) ... 538s Selecting previously unselected package xdg-utils. 539s Preparing to unpack .../058-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 539s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 539s Selecting previously unselected package r-base-core. 539s Preparing to unpack .../059-r-base-core_4.3.2-1build1_arm64.deb ... 539s Unpacking r-base-core (4.3.2-1build1) ... 541s Selecting previously unselected package r-cran-littler. 541s Preparing to unpack .../060-r-cran-littler_0.3.19-1_arm64.deb ... 541s Unpacking r-cran-littler (0.3.19-1) ... 542s Selecting previously unselected package littler. 542s Preparing to unpack .../061-littler_0.3.19-1_all.deb ... 542s Unpacking littler (0.3.19-1) ... 542s Selecting previously unselected package node-bootstrap-sass. 542s Preparing to unpack .../062-node-bootstrap-sass_3.4.3-2_all.deb ... 542s Unpacking node-bootstrap-sass (3.4.3-2) ... 543s Selecting previously unselected package node-html5shiv. 543s Preparing to unpack .../063-node-html5shiv_3.7.3+dfsg-5_all.deb ... 543s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 543s Selecting previously unselected package node-normalize.css. 543s Preparing to unpack .../064-node-normalize.css_8.0.1-5_all.deb ... 543s Unpacking node-normalize.css (8.0.1-5) ... 543s Selecting previously unselected package r-cran-mass. 543s Preparing to unpack .../065-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 543s Unpacking r-cran-mass (7.3-60.0.1-1) ... 544s Selecting previously unselected package r-cran-pixmap. 544s Preparing to unpack .../066-r-cran-pixmap_0.4-12-1_all.deb ... 544s Unpacking r-cran-pixmap (0.4-12-1) ... 544s Selecting previously unselected package r-cran-lattice. 544s Preparing to unpack .../067-r-cran-lattice_0.22-5-1_arm64.deb ... 544s Unpacking r-cran-lattice (0.22-5-1) ... 544s Selecting previously unselected package r-cran-sp. 544s Preparing to unpack .../068-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 544s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 544s Selecting previously unselected package r-cran-pkgkitten. 544s Preparing to unpack .../069-r-cran-pkgkitten_0.2.3-1_all.deb ... 544s Unpacking r-cran-pkgkitten (0.2.3-1) ... 544s Selecting previously unselected package r-cran-rcpp. 544s Preparing to unpack .../070-r-cran-rcpp_1.0.12-1_arm64.deb ... 544s Unpacking r-cran-rcpp (1.0.12-1) ... 545s Selecting previously unselected package r-cran-rcpparmadillo. 545s Preparing to unpack .../071-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 545s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 546s Selecting previously unselected package r-cran-ade4. 546s Preparing to unpack .../072-r-cran-ade4_1.7-22-1_arm64.deb ... 546s Unpacking r-cran-ade4 (1.7-22-1) ... 547s Selecting previously unselected package r-cran-cli. 547s Preparing to unpack .../073-r-cran-cli_3.6.2-1_arm64.deb ... 547s Unpacking r-cran-cli (3.6.2-1) ... 548s Selecting previously unselected package r-cran-glue. 548s Preparing to unpack .../074-r-cran-glue_1.7.0-1_arm64.deb ... 548s Unpacking r-cran-glue (1.7.0-1) ... 548s Selecting previously unselected package r-cran-rlang. 548s Preparing to unpack .../075-r-cran-rlang_1.1.3-1_arm64.deb ... 548s Unpacking r-cran-rlang (1.1.3-1) ... 548s Selecting previously unselected package r-cran-lifecycle. 548s Preparing to unpack .../076-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 548s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 548s Selecting previously unselected package r-cran-magrittr. 548s Preparing to unpack .../077-r-cran-magrittr_2.0.3-1_arm64.deb ... 548s Unpacking r-cran-magrittr (2.0.3-1) ... 549s Selecting previously unselected package r-cran-matrix. 549s Preparing to unpack .../078-r-cran-matrix_1.6-5-1_arm64.deb ... 549s Unpacking r-cran-matrix (1.6-5-1) ... 550s Selecting previously unselected package r-cran-pkgconfig. 551s Preparing to unpack .../079-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 551s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 551s Selecting previously unselected package r-cran-cpp11. 551s Preparing to unpack .../080-r-cran-cpp11_0.4.7-1_all.deb ... 551s Unpacking r-cran-cpp11 (0.4.7-1) ... 552s Selecting previously unselected package r-cran-igraph. 552s Preparing to unpack .../081-r-cran-igraph_1.6.0-1_arm64.deb ... 552s Unpacking r-cran-igraph (1.6.0-1) ... 553s Selecting previously unselected package r-cran-nlme. 553s Preparing to unpack .../082-r-cran-nlme_3.1.164-1_arm64.deb ... 553s Unpacking r-cran-nlme (3.1.164-1) ... 554s Selecting previously unselected package r-cran-digest. 554s Preparing to unpack .../083-r-cran-digest_0.6.34-1_arm64.deb ... 554s Unpacking r-cran-digest (0.6.34-1) ... 554s Selecting previously unselected package r-cran-ape. 554s Preparing to unpack .../084-r-cran-ape_5.7-1-1_arm64.deb ... 554s Unpacking r-cran-ape (5.7-1-1) ... 555s Selecting previously unselected package r-cran-later. 555s Preparing to unpack .../085-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 555s Unpacking r-cran-later (1.3.2+dfsg-1) ... 556s Selecting previously unselected package r-cran-fastmap. 556s Preparing to unpack .../086-r-cran-fastmap_1.1.1-1_arm64.deb ... 556s Unpacking r-cran-fastmap (1.1.1-1) ... 556s Selecting previously unselected package r-cran-r6. 556s Preparing to unpack .../087-r-cran-r6_2.5.1-1_all.deb ... 556s Unpacking r-cran-r6 (2.5.1-1) ... 556s Selecting previously unselected package r-cran-promises. 557s Preparing to unpack .../088-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 557s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 557s Selecting previously unselected package r-cran-httpuv. 557s Preparing to unpack .../089-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 557s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 557s Selecting previously unselected package r-cran-mime. 557s Preparing to unpack .../090-r-cran-mime_0.12-1_arm64.deb ... 557s Unpacking r-cran-mime (0.12-1) ... 557s Selecting previously unselected package r-cran-jsonlite. 557s Preparing to unpack .../091-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 557s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 558s Selecting previously unselected package r-cran-xtable. 558s Preparing to unpack .../092-r-cran-xtable_1%3a1.8-4-2_all.deb ... 558s Unpacking r-cran-xtable (1:1.8-4-2) ... 559s Selecting previously unselected package r-cran-base64enc. 559s Preparing to unpack .../093-r-cran-base64enc_0.1-3-3_arm64.deb ... 559s Unpacking r-cran-base64enc (0.1-3-3) ... 559s Selecting previously unselected package r-cran-ellipsis. 559s Preparing to unpack .../094-r-cran-ellipsis_0.3.2-2_arm64.deb ... 559s Unpacking r-cran-ellipsis (0.3.2-2) ... 559s Selecting previously unselected package r-cran-htmltools. 560s Preparing to unpack .../095-r-cran-htmltools_0.5.7-1_arm64.deb ... 560s Unpacking r-cran-htmltools (0.5.7-1) ... 560s Selecting previously unselected package r-cran-fontawesome. 560s Preparing to unpack .../096-r-cran-fontawesome_0.5.2-1_all.deb ... 560s Unpacking r-cran-fontawesome (0.5.2-1) ... 561s Selecting previously unselected package r-cran-sourcetools. 561s Preparing to unpack .../097-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 561s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 561s Selecting previously unselected package r-cran-crayon. 561s Preparing to unpack .../098-r-cran-crayon_1.5.2-1_all.deb ... 561s Unpacking r-cran-crayon (1.5.2-1) ... 561s Selecting previously unselected package r-cran-withr. 561s Preparing to unpack .../099-r-cran-withr_2.5.0-1_all.deb ... 561s Unpacking r-cran-withr (2.5.0-1) ... 561s Selecting previously unselected package r-cran-commonmark. 561s Preparing to unpack .../100-r-cran-commonmark_1.9.1-1_arm64.deb ... 561s Unpacking r-cran-commonmark (1.9.1-1) ... 561s Selecting previously unselected package r-cran-cachem. 562s Preparing to unpack .../101-r-cran-cachem_1.0.8-1_arm64.deb ... 562s Unpacking r-cran-cachem (1.0.8-1) ... 562s Selecting previously unselected package r-cran-jquerylib. 562s Preparing to unpack .../102-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 562s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 563s Selecting previously unselected package r-cran-memoise. 563s Preparing to unpack .../103-r-cran-memoise_2.0.1-1_all.deb ... 563s Unpacking r-cran-memoise (2.0.1-1) ... 563s Selecting previously unselected package r-cran-fs. 564s Preparing to unpack .../104-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 564s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 564s Selecting previously unselected package r-cran-rappdirs. 564s Preparing to unpack .../105-r-cran-rappdirs_0.3.3-1_arm64.deb ... 564s Unpacking r-cran-rappdirs (0.3.3-1) ... 565s Selecting previously unselected package r-cran-sass. 565s Preparing to unpack .../106-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 565s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 565s Selecting previously unselected package r-cran-bslib. 565s Preparing to unpack .../107-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 565s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 568s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 568s Preparing to unpack .../108-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 568s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 568s Selecting previously unselected package r-cran-shiny. 568s Preparing to unpack .../109-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 568s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 569s Selecting previously unselected package r-cran-gtable. 569s Preparing to unpack .../110-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 569s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 569s Selecting previously unselected package r-cran-isoband. 569s Preparing to unpack .../111-r-cran-isoband_0.2.7-1_arm64.deb ... 569s Unpacking r-cran-isoband (0.2.7-1) ... 570s Selecting previously unselected package r-cran-mgcv. 570s Preparing to unpack .../112-r-cran-mgcv_1.9-1-1_arm64.deb ... 570s Unpacking r-cran-mgcv (1.9-1-1) ... 570s Selecting previously unselected package r-cran-farver. 570s Preparing to unpack .../113-r-cran-farver_2.1.1-1_arm64.deb ... 570s Unpacking r-cran-farver (2.1.1-1) ... 571s Selecting previously unselected package r-cran-labeling. 571s Preparing to unpack .../114-r-cran-labeling_0.4.3-1_all.deb ... 571s Unpacking r-cran-labeling (0.4.3-1) ... 571s Selecting previously unselected package r-cran-colorspace. 571s Preparing to unpack .../115-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 571s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 572s Selecting previously unselected package r-cran-munsell. 572s Preparing to unpack .../116-r-cran-munsell_0.5.0-2build1_all.deb ... 572s Unpacking r-cran-munsell (0.5.0-2build1) ... 572s Selecting previously unselected package r-cran-rcolorbrewer. 572s Preparing to unpack .../117-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 572s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 573s Selecting previously unselected package r-cran-viridislite. 573s Preparing to unpack .../118-r-cran-viridislite_0.4.2-2_all.deb ... 573s Unpacking r-cran-viridislite (0.4.2-2) ... 574s Selecting previously unselected package r-cran-scales. 574s Preparing to unpack .../119-r-cran-scales_1.3.0-1_all.deb ... 574s Unpacking r-cran-scales (1.3.0-1) ... 575s Selecting previously unselected package r-cran-fansi. 575s Preparing to unpack .../120-r-cran-fansi_1.0.5-1_arm64.deb ... 575s Unpacking r-cran-fansi (1.0.5-1) ... 575s Selecting previously unselected package r-cran-utf8. 576s Preparing to unpack .../121-r-cran-utf8_1.2.4-1_arm64.deb ... 576s Unpacking r-cran-utf8 (1.2.4-1) ... 576s Selecting previously unselected package r-cran-vctrs. 576s Preparing to unpack .../122-r-cran-vctrs_0.6.5-1_arm64.deb ... 576s Unpacking r-cran-vctrs (0.6.5-1) ... 577s Selecting previously unselected package r-cran-pillar. 577s Preparing to unpack .../123-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 577s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 577s Selecting previously unselected package r-cran-tibble. 577s Preparing to unpack .../124-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 577s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 577s Selecting previously unselected package r-cran-ggplot2. 578s Preparing to unpack .../125-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 578s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 578s Selecting previously unselected package r-cran-segmented. 579s Preparing to unpack .../126-r-cran-segmented_2.0-3-1_all.deb ... 579s Unpacking r-cran-segmented (2.0-3-1) ... 579s Selecting previously unselected package r-cran-seqinr. 579s Preparing to unpack .../127-r-cran-seqinr_4.2-36-1_arm64.deb ... 579s Unpacking r-cran-seqinr (4.2-36-1) ... 580s Selecting previously unselected package r-cran-boot. 580s Preparing to unpack .../128-r-cran-boot_1.3-30-1_all.deb ... 580s Unpacking r-cran-boot (1.3-30-1) ... 580s Selecting previously unselected package r-cran-plyr. 580s Preparing to unpack .../129-r-cran-plyr_1.8.9-1_arm64.deb ... 580s Unpacking r-cran-plyr (1.8.9-1) ... 581s Selecting previously unselected package r-cran-stringi. 581s Preparing to unpack .../130-r-cran-stringi_1.8.3-1_arm64.deb ... 581s Unpacking r-cran-stringi (1.8.3-1) ... 581s Selecting previously unselected package r-cran-stringr. 581s Preparing to unpack .../131-r-cran-stringr_1.5.1-1_all.deb ... 581s Unpacking r-cran-stringr (1.5.1-1) ... 582s Selecting previously unselected package r-cran-reshape2. 582s Preparing to unpack .../132-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 582s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 582s Selecting previously unselected package r-cran-generics. 582s Preparing to unpack .../133-r-cran-generics_0.1.3-1_all.deb ... 582s Unpacking r-cran-generics (0.1.3-1) ... 582s Selecting previously unselected package r-cran-tidyselect. 582s Preparing to unpack .../134-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 582s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 583s Selecting previously unselected package r-cran-dplyr. 583s Preparing to unpack .../135-r-cran-dplyr_1.1.4-1_arm64.deb ... 583s Unpacking r-cran-dplyr (1.1.4-1) ... 584s Selecting previously unselected package r-cran-permute. 584s Preparing to unpack .../136-r-cran-permute_0.9-7-1_all.deb ... 584s Unpacking r-cran-permute (0.9-7-1) ... 584s Selecting previously unselected package r-cran-cluster. 584s Preparing to unpack .../137-r-cran-cluster_2.1.6-1_arm64.deb ... 585s Unpacking r-cran-cluster (2.1.6-1) ... 585s Selecting previously unselected package r-cran-vegan. 585s Preparing to unpack .../138-r-cran-vegan_2.6-4+dfsg-1_arm64.deb ... 585s Unpacking r-cran-vegan (2.6-4+dfsg-1) ... 585s Selecting previously unselected package r-cran-adegenet. 586s Preparing to unpack .../139-r-cran-adegenet_2.1.10-1_arm64.deb ... 586s Unpacking r-cran-adegenet (2.1.10-1) ... 586s Selecting previously unselected package r-cran-brio. 586s Preparing to unpack .../140-r-cran-brio_1.1.4-1_arm64.deb ... 586s Unpacking r-cran-brio (1.1.4-1) ... 586s Selecting previously unselected package r-cran-ps. 586s Preparing to unpack .../141-r-cran-ps_1.7.6-1_arm64.deb ... 586s Unpacking r-cran-ps (1.7.6-1) ... 587s Selecting previously unselected package r-cran-processx. 587s Preparing to unpack .../142-r-cran-processx_3.8.3-1_arm64.deb ... 587s Unpacking r-cran-processx (3.8.3-1) ... 587s Selecting previously unselected package r-cran-callr. 587s Preparing to unpack .../143-r-cran-callr_3.7.3-2_all.deb ... 587s Unpacking r-cran-callr (3.7.3-2) ... 588s Selecting previously unselected package r-cran-desc. 588s Preparing to unpack .../144-r-cran-desc_1.4.3-1_all.deb ... 588s Unpacking r-cran-desc (1.4.3-1) ... 589s Selecting previously unselected package r-cran-diffobj. 589s Preparing to unpack .../145-r-cran-diffobj_0.3.5-1_arm64.deb ... 589s Unpacking r-cran-diffobj (0.3.5-1) ... 590s Selecting previously unselected package r-cran-evaluate. 590s Preparing to unpack .../146-r-cran-evaluate_0.23-1_all.deb ... 590s Unpacking r-cran-evaluate (0.23-1) ... 591s Selecting previously unselected package r-cran-pkgbuild. 591s Preparing to unpack .../147-r-cran-pkgbuild_1.4.3-1_all.deb ... 591s Unpacking r-cran-pkgbuild (1.4.3-1) ... 591s Selecting previously unselected package r-cran-rprojroot. 591s Preparing to unpack .../148-r-cran-rprojroot_2.0.4-1_all.deb ... 592s Unpacking r-cran-rprojroot (2.0.4-1) ... 592s Selecting previously unselected package r-cran-pkgload. 592s Preparing to unpack .../149-r-cran-pkgload_1.3.4-1_all.deb ... 592s Unpacking r-cran-pkgload (1.3.4-1) ... 593s Selecting previously unselected package r-cran-praise. 593s Preparing to unpack .../150-r-cran-praise_1.0.0-4build1_all.deb ... 593s Unpacking r-cran-praise (1.0.0-4build1) ... 594s Selecting previously unselected package r-cran-rematch2. 594s Preparing to unpack .../151-r-cran-rematch2_2.1.2-2build1_all.deb ... 594s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 594s Selecting previously unselected package r-cran-waldo. 594s Preparing to unpack .../152-r-cran-waldo_0.5.2-1build1_all.deb ... 594s Unpacking r-cran-waldo (0.5.2-1build1) ... 594s Selecting previously unselected package r-cran-testthat. 594s Preparing to unpack .../153-r-cran-testthat_3.2.1-1_arm64.deb ... 594s Unpacking r-cran-testthat (3.2.1-1) ... 595s Selecting previously unselected package autopkgtest-satdep. 595s Preparing to unpack .../154-1-autopkgtest-satdep.deb ... 595s Unpacking autopkgtest-satdep (0) ... 596s Setting up libjs-json (0~20221030+~1.0.8-1) ... 596s Setting up javascript-common (11+nmu1) ... 596s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 596s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 596s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 596s Setting up libpaper1:arm64 (1.1.29) ... 598s 598s Creating config file /etc/papersize with new version 598s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 598s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 598s Setting up libdatrie1:arm64 (0.2.13-3) ... 598s Setting up libjs-popper.js (1.16.1+ds-6) ... 598s Setting up libxcb-render0:arm64 (1.15-1) ... 598s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 598s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 598s Setting up unzip (6.0-28ubuntu3) ... 598s Setting up x11-common (1:7.7+23ubuntu2) ... 602s Setting up node-html5shiv (3.7.3+dfsg-5) ... 602s Setting up libdeflate0:arm64 (1.19-1) ... 602s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 602s Setting up libxcb-shm0:arm64 (1.15-1) ... 602s Setting up libpaper-utils (1.1.29) ... 602s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 602s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 602s Setting up libjs-es5-shim (4.6.7-2) ... 602s Setting up zip (3.0-13) ... 602s Setting up libblas3:arm64 (3.12.0-3) ... 602s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 602s Setting up libjs-d3 (3.5.17-4) ... 602s Setting up fonts-dejavu-mono (2.37-8) ... 602s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 602s Setting up fonts-dejavu-core (2.37-8) ... 603s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 603s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 603s Setting up libwebp7:arm64 (1.3.2-0.4) ... 603s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 603s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 603s Setting up libthai-data (0.1.29-2) ... 603s Setting up node-bootstrap-sass (3.4.3-2) ... 603s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 603s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 603s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 603s Setting up node-normalize.css (8.0.1-5) ... 603s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 603s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 603s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 603s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 603s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 603s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 603s Setting up libice6:arm64 (2:1.0.10-1build2) ... 603s Setting up liblapack3:arm64 (3.12.0-3) ... 603s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 603s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 605s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 606s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 606s Setting up libthai0:arm64 (0.1.29-2) ... 606s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 606s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 606s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 606s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 606s Setting up fontconfig (2.15.0-1ubuntu1) ... 608s Regenerating fonts cache... done. 608s Setting up libxft2:arm64 (2.3.6-1) ... 608s Setting up libtk8.6:arm64 (8.6.13-2) ... 608s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 608s Setting up libcairo2:arm64 (1.18.0-1) ... 608s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 608s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 608s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 608s Setting up r-base-core (4.3.2-1build1) ... 610s 610s Creating config file /etc/R/Renviron with new version 610s Setting up r-cran-crayon (1.5.2-1) ... 610s Setting up r-cran-labeling (0.4.3-1) ... 610s Setting up r-cran-sourcetools (0.1.7-1-1) ... 610s Setting up r-cran-lattice (0.22-5-1) ... 610s Setting up r-cran-ps (1.7.6-1) ... 610s Setting up r-cran-nlme (3.1.164-1) ... 610s Setting up r-cran-farver (2.1.1-1) ... 610s Setting up r-cran-viridislite (0.4.2-2) ... 610s Setting up r-cran-pixmap (0.4-12-1) ... 610s Setting up r-cran-cluster (2.1.6-1) ... 610s Setting up r-cran-commonmark (1.9.1-1) ... 610s Setting up r-cran-r6 (2.5.1-1) ... 610s Setting up r-cran-pkgkitten (0.2.3-1) ... 611s Setting up r-cran-magrittr (2.0.3-1) ... 611s Setting up r-cran-rappdirs (0.3.3-1) ... 611s Setting up r-cran-littler (0.3.19-1) ... 611s Setting up r-cran-permute (0.9-7-1) ... 611s Setting up r-cran-fs (1.6.3+dfsg-1) ... 611s Setting up r-cran-rcpp (1.0.12-1) ... 611s Setting up r-cran-brio (1.1.4-1) ... 611s Setting up r-cran-boot (1.3-30-1) ... 611s Setting up r-cran-diffobj (0.3.5-1) ... 611s Setting up r-cran-rlang (1.1.3-1) ... 611s Setting up littler (0.3.19-1) ... 611s Setting up r-cran-withr (2.5.0-1) ... 611s Setting up r-cran-processx (3.8.3-1) ... 611s Setting up r-cran-mime (0.12-1) ... 611s Setting up r-cran-praise (1.0.0-4build1) ... 611s Setting up r-cran-generics (0.1.3-1) ... 611s Setting up r-cran-base64enc (0.1-3-3) ... 611s Setting up r-cran-digest (0.6.34-1) ... 611s Setting up r-cran-ape (5.7-1-1) ... 611s Setting up r-cran-evaluate (0.23-1) ... 611s Setting up r-cran-fansi (1.0.5-1) ... 611s Setting up r-cran-mass (7.3-60.0.1-1) ... 611s Setting up r-cran-glue (1.7.0-1) ... 611s Setting up r-cran-xtable (1:1.8-4-2) ... 611s Setting up r-cran-cli (3.6.2-1) ... 611s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 611s Setting up r-cran-rprojroot (2.0.4-1) ... 611s Setting up r-cran-fastmap (1.1.1-1) ... 611s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 611s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 611s Setting up r-cran-sp (1:2.1-2+dfsg-1) ... 611s Setting up r-cran-utf8 (1.2.4-1) ... 611s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 611s Setting up r-cran-stringi (1.8.3-1) ... 611s Setting up r-cran-cpp11 (0.4.7-1) ... 611s Setting up r-cran-segmented (2.0-3-1) ... 611s Setting up r-cran-plyr (1.8.9-1) ... 611s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 611s Setting up r-cran-isoband (0.2.7-1) ... 611s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 611s Setting up r-cran-later (1.3.2+dfsg-1) ... 611s Setting up r-cran-matrix (1.6-5-1) ... 611s Setting up r-cran-mgcv (1.9-1-1) ... 611s Setting up r-cran-cachem (1.0.8-1) ... 611s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 611s Setting up r-cran-vctrs (0.6.5-1) ... 611s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 611s Setting up r-cran-ellipsis (0.3.2-2) ... 611s Setting up r-cran-stringr (1.5.1-1) ... 611s Setting up r-cran-callr (3.7.3-2) ... 611s Setting up r-cran-desc (1.4.3-1) ... 611s Setting up r-cran-munsell (0.5.0-2build1) ... 611s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 611s Setting up r-cran-igraph (1.6.0-1) ... 611s Setting up r-cran-ade4 (1.7-22-1) ... 611s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 611s Setting up r-cran-reshape2 (1.4.4-2build1) ... 611s Setting up r-cran-scales (1.3.0-1) ... 611s Setting up r-cran-memoise (2.0.1-1) ... 611s Setting up r-cran-promises (1.2.1+dfsg-1) ... 611s Setting up r-cran-vegan (2.6-4+dfsg-1) ... 611s Setting up r-cran-htmltools (0.5.7-1) ... 611s Setting up r-cran-pkgbuild (1.4.3-1) ... 611s Setting up r-cran-sass (0.4.8+dfsg-1) ... 611s Setting up r-cran-dplyr (1.1.4-1) ... 611s Setting up r-cran-pkgload (1.3.4-1) ... 611s Setting up r-cran-seqinr (4.2-36-1) ... 611s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 611s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 611s Setting up r-cran-rematch2 (2.1.2-2build1) ... 611s Setting up r-cran-fontawesome (0.5.2-1) ... 611s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 611s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 611s Setting up r-cran-waldo (0.5.2-1build1) ... 611s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 611s Setting up r-cran-testthat (3.2.1-1) ... 611s Setting up r-cran-adegenet (2.1.10-1) ... 611s Setting up autopkgtest-satdep (0) ... 611s Processing triggers for man-db (2.12.0-3) ... 617s Processing triggers for install-info (7.1-3) ... 618s Processing triggers for libc-bin (2.39-0ubuntu2) ... 671s (Reading database ... 89242 files and directories currently installed.) 671s Removing autopkgtest-satdep (0) ... 673s autopkgtest [18:00:00]: test run-unit-test: [----------------------- 675s 675s R version 4.3.2 (2023-10-31) -- "Eye Holes" 675s Copyright (C) 2023 The R Foundation for Statistical Computing 675s Platform: aarch64-unknown-linux-gnu (64-bit) 675s 675s R is free software and comes with ABSOLUTELY NO WARRANTY. 675s You are welcome to redistribute it under certain conditions. 675s Type 'license()' or 'licence()' for distribution details. 675s 675s R is a collaborative project with many contributors. 675s Type 'contributors()' for more information and 675s 'citation()' on how to cite R or R packages in publications. 675s 675s Type 'demo()' for some demos, 'help()' for on-line help, or 675s 'help.start()' for an HTML browser interface to help. 675s Type 'q()' to quit R. 675s 676s > library(testthat) 677s > suppressPackageStartupMessages(library(adegenet)) 695s > test_check("adegenet") 697s 697s Converting data from a genind to a genpop object... 697s 697s ...done. 697s 706s [ FAIL 0 | WARN 0 | SKIP 39 | PASS 13 ] 706s 706s == Skipped tests (39) ========================================================== 712s * On CRAN (39): 'test-findclust.R:4:3', 'test-prop.R:13:3', 712s 'test-seppop.R:6:3', 'test-seppop.R:14:3', 'test-seppop.R:23:3', 712s 'test-seppop.R:33:3', 'test-seppop.R:56:3', 'test-seppop.R:65:3', 712s 'test-seppop.R:75:3', 'test_compoplot.R:6:3', 'test_compoplot.R:11:3', 712s 'test_compoplot.R:16:3', 'test_compoplot.R:21:3', 'test_compoplot.R:26:3', 712s 'test_constructors.R:4:3', 'test_constructors.R:11:3', 'test_genlight.R:5:3', 712s 'test_genlight.R:18:3', 'test_genlight.R:35:3', 'test_genlight.R:42:3', 712s 'test_genlight.R:68:3', 'test_genlight.R:79:3', 'test_genlight.R:90:3', 712s 'test_genlight.R:96:3', 'test_genlight.R:104:3', 'test_hierarchy.R:4:3', 712s 'test_hierarchy.R:27:3', 'test_hierarchy.R:38:3', 'test_repool.R:7:3', 712s 'test_snapclust.R:5:5', 'test_snapclust.R:31:5', 'test_snapclust.R:65:3', 712s 'test_snapclust.R:78:3', 'test_snapclust.R:88:3', 'test_subset.R:6:3', 712s 'test_subset.R:14:3', 'test_summary.R:4:3', 'test_xval.R:15:3', 712s 'test_xval.R:26:3' 712s 712s [ FAIL 0 | WARN 0 | SKIP 39 | PASS 13 ] 712s > 713s autopkgtest [18:00:40]: test run-unit-test: -----------------------] 714s autopkgtest [18:00:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 714s run-unit-test PASS 715s autopkgtest [18:00:42]: test pkg-r-autopkgtest: preparing testbed 719s Reading package lists... 721s Building dependency tree... 721s Reading state information... 723s Starting pkgProblemResolver with broken count: 0 723s Starting 2 pkgProblemResolver with broken count: 0 723s Done 726s The following additional packages will be installed: 726s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 726s dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 726s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gdal-data gdal-plugins 726s gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 726s gfortran-aarch64-linux-gnu icu-devtools libaec0 libarmadillo12 libarpack2 726s libasan8 libatomic1 libblas-dev libblosc1 libbz2-dev libc-dev-bin libc6-dev 726s libcc1-0 libcfitsio10 libcrypt-dev libdav1d7 libde265-0 libfreexl1 libfyba0 726s libgcc-13-dev libgdal34 libgeos-c1v5 libgeos3.12.1 libgeotiff5 726s libgfortran-13-dev libgif7 libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 726s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhwasan0 libicu-dev 726s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libkmlbase1 726s libkmldom1 libkmlengine1 liblapack-dev liblcms2-2 liblsan0 libltdl7 726s liblzma-dev libminizip1 libmpc3 libmysqlclient21 libncurses-dev libnetcdf19 726s libnsl-dev libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpcre2-16-0 726s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 726s libpoppler134 libpq5 libproj25 libqhull-r8.0 libreadline-dev librttopo1 726s libsnappy1v5 libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtirpc-dev 726s libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1 726s libxerces-c3.2 linux-libc-dev mysql-common pkg-config pkg-r-autopkgtest 726s pkgconf pkgconf-bin proj-data r-base-dev r-cran-class r-cran-classint 726s r-cran-dbi r-cran-deldir r-cran-e1071 r-cran-interp r-cran-kernsmooth 726s r-cran-maps r-cran-proxy r-cran-rcppeigen r-cran-s2 r-cran-sf r-cran-spdata 726s r-cran-spdep r-cran-units r-cran-wk rpcsvc-proto unixodbc-common zlib1g-dev 726s Suggested packages: 726s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 726s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 726s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 726s liblapack-doc glibc-doc geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc 726s libhdf4-alt-dev hdf4-tools libheif-plugin-ffmpegdec libheif-plugin-jpegdec 726s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 726s libheif-plugin-rav1e libheif-plugin-svtenc icu-doc liblcms2-utils 726s liblzma-doc ncurses-doc odbc-postgresql tdsodbc ogdi-bin proj-bin 726s readline-doc libstdc++-13-doc texlive-base texlive-latex-base 726s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 726s texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo 726s r-cran-rmysql r-cran-polyclip r-cran-gridextra r-cran-scatterplot3d 726s r-cran-mapproj r-cran-mapdata r-cran-foreign r-cran-spatialreg 726s Recommended packages: 726s bzip2-doc manpages manpages-dev libc-devtools proj-bin libheif-plugin-aomenc 726s libheif-plugin-x265 libpng-tools poppler-data r-cran-knitr r-cran-rmarkdown 726s r-cran-tinytest r-cran-cba r-cran-bit64 r-cran-blob r-cran-covr 726s r-cran-lwgeom r-cran-pbapply r-cran-raster r-cran-rpostgresql r-cran-rsqlite 726s r-cran-spatstat r-cran-spatstat.geom r-cran-spatstat.random 726s r-cran-spatstat.linnet r-cran-spatstat.utils r-cran-stars r-cran-terra 726s r-cran-tidyr r-cran-spatialreg r-cran-dbscan r-cran-foreign r-cran-rspectra 726s r-cran-spam r-cran-xml2 r-cran-vdiffr r-cran-readr 727s The following NEW packages will be installed: 727s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 727s cpp-aarch64-linux-gnu dctrl-tools g++ g++-13 g++-13-aarch64-linux-gnu 727s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 727s gcc-aarch64-linux-gnu gdal-data gdal-plugins gfortran gfortran-13 727s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 727s libaec0 libarmadillo12 libarpack2 libasan8 libatomic1 libblas-dev libblosc1 727s libbz2-dev libc-dev-bin libc6-dev libcc1-0 libcfitsio10 libcrypt-dev 727s libdav1d7 libde265-0 libfreexl1 libfyba0 libgcc-13-dev libgdal34 727s libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran-13-dev libgif7 727s libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 libheif-plugin-dav1d 727s libheif-plugin-libde265 libheif1 libhwasan0 libicu-dev libisl23 libitm1 727s libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libkmlbase1 libkmldom1 727s libkmlengine1 liblapack-dev liblcms2-2 liblsan0 libltdl7 liblzma-dev 727s libminizip1 libmpc3 libmysqlclient21 libncurses-dev libnetcdf19 libnsl-dev 727s libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpcre2-16-0 libpcre2-32-0 727s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libpoppler134 libpq5 727s libproj25 libqhull-r8.0 libreadline-dev librttopo1 libsnappy1v5 727s libspatialite8 libstdc++-13-dev libsuperlu6 libsz2 libtirpc-dev libtsan2 727s libubsan1 libudunits2-0 libudunits2-data liburiparser1 libxerces-c3.2 727s linux-libc-dev mysql-common pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 727s proj-data r-base-dev r-cran-class r-cran-classint r-cran-dbi r-cran-deldir 727s r-cran-e1071 r-cran-interp r-cran-kernsmooth r-cran-maps r-cran-proxy 727s r-cran-rcppeigen r-cran-s2 r-cran-sf r-cran-spdata r-cran-spdep r-cran-units 727s r-cran-wk rpcsvc-proto unixodbc-common zlib1g-dev 727s 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. 727s Need to get 142 MB/142 MB of archives. 727s After this operation, 484 MB of additional disk space will be used. 727s Get:1 /tmp/autopkgtest.ll11y5/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B] 727s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 727s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 728s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 728s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 728s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 728s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 728s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 729s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 729s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 729s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 730s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 730s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 730s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 730s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 730s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 730s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 730s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 731s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 731s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 731s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 732s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 732s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 732s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 736s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 736s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 736s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 736s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 737s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 739s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 739s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 739s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 739s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 739s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 739s Get:35 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-data all 3.8.4+dfsg-1 [261 kB] 739s Get:36 http://ftpmaster.internal/ubuntu noble/universe arm64 gdal-plugins arm64 3.8.4+dfsg-1 [24.5 kB] 739s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 740s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 741s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 741s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 741s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 741s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 741s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 741s Get:44 http://ftpmaster.internal/ubuntu noble/universe arm64 libarpack2 arm64 3.9.1-1 [90.2 kB] 741s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1 [166 kB] 741s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 libarmadillo12 arm64 1:12.6.7+dfsg-1 [134 kB] 741s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 741s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 741s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 741s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 741s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libcfitsio10 arm64 4.3.1-1 [519 kB] 741s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libdav1d7 arm64 1.4.0-1 [297 kB] 741s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libde265-0 arm64 1.0.15-1 [167 kB] 741s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 libfyba0 arm64 4.1.1-8 [119 kB] 741s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libminizip1 arm64 1:1.3.dfsg-3ubuntu1 [22.3 kB] 741s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libfreexl1 arm64 2.0.0-1 [41.1 kB] 742s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos3.12.1 arm64 3.12.1-1 [825 kB] 742s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeos-c1v5 arm64 3.12.1-1 [88.8 kB] 742s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 proj-data all 9.3.1-1 [7867 kB] 743s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libproj25 arm64 9.3.1-1 [1261 kB] 743s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libgeotiff5 arm64 1.7.1-5 [59.8 kB] 743s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libgif7 arm64 5.2.1-2.5 [34.2 kB] 743s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf4-0-alt arm64 4.2.16-3 [267 kB] 743s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 743s Get:65 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 743s Get:66 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-dav1d arm64 1.17.6-1ubuntu1 [10.9 kB] 743s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif-plugin-libde265 arm64 1.17.6-1ubuntu1 [9062 B] 743s Get:68 http://ftpmaster.internal/ubuntu noble/universe arm64 libheif1 arm64 1.17.6-1ubuntu1 [311 kB] 743s Get:69 http://ftpmaster.internal/ubuntu noble/universe arm64 liburiparser1 arm64 0.9.7+dfsg-2 [34.0 kB] 743s Get:70 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlbase1 arm64 1.3.0-10 [45.7 kB] 743s Get:71 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmldom1 arm64 1.3.0-10 [140 kB] 743s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 libkmlengine1 arm64 1.3.0-10 [64.9 kB] 743s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 mysql-common all 5.8+1.1.0 [6626 B] 743s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libmysqlclient21 arm64 8.0.36-1 [1271 kB] 744s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 744s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libnetcdf19 arm64 1:4.9.2-3ubuntu1 [470 kB] 744s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libltdl7 arm64 2.4.7-7 [40.3 kB] 744s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libodbc2 arm64 2.3.12-1 [144 kB] 744s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 unixodbc-common all 2.3.12-1 [8524 B] 744s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libodbcinst2 arm64 2.3.12-1 [29.3 kB] 744s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libogdi4.1 arm64 4.1.1+ds-1 [204 kB] 744s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] 745s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] 745s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpoppler134 arm64 24.02.0-1ubuntu2 [1072 kB] 745s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpq5 arm64 16.2-1 [136 kB] 745s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libqhull-r8.0 arm64 2020.2-6 [188 kB] 745s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 librttopo1 arm64 1.1.0-3 [184 kB] 745s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libspatialite8 arm64 5.1.0-1 [1938 kB] 745s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libxerces-c3.2 arm64 3.2.4+debian-1.1 [1065 kB] 745s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libgdal34 arm64 3.8.4+dfsg-1 [7887 kB] 746s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 748s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 748s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 748s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 748s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 749s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 749s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 749s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 750s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 750s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 750s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 750s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 750s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 750s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 751s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-data all 2.2.28-7 [19.3 kB] 751s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libudunits2-0 arm64 2.2.28-7 [52.5 kB] 751s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 751s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 751s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 751s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 751s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 751s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 751s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-class arm64 7.3-22-2 [88.2 kB] 751s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 751s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 751s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 751s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 751s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 752s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 752s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 752s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 753s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 753s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 754s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-s2 arm64 1.1.6-1 [1947 kB] 754s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 754s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sf arm64 1.0-15+dfsg-1 [2989 kB] 755s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spdata all 2.3.0-1 [3734 kB] 755s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-spdep arm64 1.3-1+dfsg-1 [2134 kB] 762s Fetched 142 MB in 29s (4959 kB/s) 762s Selecting previously unselected package libc-dev-bin. 762s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89242 files and directories currently installed.) 762s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 762s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 762s Selecting previously unselected package linux-libc-dev:arm64. 762s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 762s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 764s Selecting previously unselected package libcrypt-dev:arm64. 765s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 765s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 765s Selecting previously unselected package libtirpc-dev:arm64. 765s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 765s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 765s Selecting previously unselected package libnsl-dev:arm64. 765s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 765s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 766s Selecting previously unselected package rpcsvc-proto. 766s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 766s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 766s Selecting previously unselected package libc6-dev:arm64. 766s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 767s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 768s Selecting previously unselected package libisl23:arm64. 768s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 768s Unpacking libisl23:arm64 (0.26-3) ... 769s Selecting previously unselected package libmpc3:arm64. 769s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 769s Unpacking libmpc3:arm64 (1.3.1-1) ... 769s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 769s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 769s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 771s Selecting previously unselected package cpp-13. 771s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 771s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 771s Selecting previously unselected package cpp-aarch64-linux-gnu. 771s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 772s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 772s Selecting previously unselected package cpp. 772s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 772s Unpacking cpp (4:13.2.0-7ubuntu1) ... 772s Selecting previously unselected package libcc1-0:arm64. 772s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 772s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 772s Selecting previously unselected package libitm1:arm64. 772s Preparing to unpack .../014-libitm1_14-20240303-1ubuntu1_arm64.deb ... 772s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 773s Selecting previously unselected package libatomic1:arm64. 773s Preparing to unpack .../015-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 773s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 773s Selecting previously unselected package libasan8:arm64. 774s Preparing to unpack .../016-libasan8_14-20240303-1ubuntu1_arm64.deb ... 774s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 775s Selecting previously unselected package liblsan0:arm64. 775s Preparing to unpack .../017-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 775s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 775s Selecting previously unselected package libtsan2:arm64. 775s Preparing to unpack .../018-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 775s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 776s Selecting previously unselected package libubsan1:arm64. 776s Preparing to unpack .../019-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 776s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 777s Selecting previously unselected package libhwasan0:arm64. 777s Preparing to unpack .../020-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 777s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 777s Selecting previously unselected package libgcc-13-dev:arm64. 778s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 778s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 778s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 779s Preparing to unpack .../022-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 779s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 782s Selecting previously unselected package gcc-13. 782s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 782s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 783s Selecting previously unselected package gcc-aarch64-linux-gnu. 783s Preparing to unpack .../024-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 783s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 784s Selecting previously unselected package gcc. 784s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 784s Unpacking gcc (4:13.2.0-7ubuntu1) ... 784s Selecting previously unselected package libstdc++-13-dev:arm64. 784s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 784s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 788s Selecting previously unselected package g++-13-aarch64-linux-gnu. 788s Preparing to unpack .../027-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 788s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 792s Selecting previously unselected package g++-13. 792s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_arm64.deb ... 792s Unpacking g++-13 (13.2.0-17ubuntu2) ... 792s Selecting previously unselected package g++-aarch64-linux-gnu. 792s Preparing to unpack .../029-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 792s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 792s Selecting previously unselected package g++. 792s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 792s Unpacking g++ (4:13.2.0-7ubuntu1) ... 792s Selecting previously unselected package build-essential. 793s Preparing to unpack .../031-build-essential_12.10ubuntu1_arm64.deb ... 793s Unpacking build-essential (12.10ubuntu1) ... 793s Selecting previously unselected package dctrl-tools. 793s Preparing to unpack .../032-dctrl-tools_2.24-3build2_arm64.deb ... 793s Unpacking dctrl-tools (2.24-3build2) ... 793s Selecting previously unselected package gdal-data. 793s Preparing to unpack .../033-gdal-data_3.8.4+dfsg-1_all.deb ... 793s Unpacking gdal-data (3.8.4+dfsg-1) ... 794s Selecting previously unselected package gdal-plugins:arm64. 794s Preparing to unpack .../034-gdal-plugins_3.8.4+dfsg-1_arm64.deb ... 794s Unpacking gdal-plugins:arm64 (3.8.4+dfsg-1) ... 795s Selecting previously unselected package libgfortran-13-dev:arm64. 795s Preparing to unpack .../035-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 795s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 795s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 795s Preparing to unpack .../036-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 795s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 801s Selecting previously unselected package gfortran-13. 801s Preparing to unpack .../037-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 801s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 801s Selecting previously unselected package gfortran-aarch64-linux-gnu. 801s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 801s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 801s Selecting previously unselected package gfortran. 802s Preparing to unpack .../039-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 802s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 802s Selecting previously unselected package icu-devtools. 802s Preparing to unpack .../040-icu-devtools_74.2-1ubuntu1_arm64.deb ... 802s Unpacking icu-devtools (74.2-1ubuntu1) ... 803s Selecting previously unselected package libaec0:arm64. 803s Preparing to unpack .../041-libaec0_1.1.2-1_arm64.deb ... 803s Unpacking libaec0:arm64 (1.1.2-1) ... 803s Selecting previously unselected package libarpack2:arm64. 803s Preparing to unpack .../042-libarpack2_3.9.1-1_arm64.deb ... 803s Unpacking libarpack2:arm64 (3.9.1-1) ... 803s Selecting previously unselected package libsuperlu6:arm64. 804s Preparing to unpack .../043-libsuperlu6_6.0.1+dfsg1-1_arm64.deb ... 804s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1) ... 804s Selecting previously unselected package libarmadillo12. 804s Preparing to unpack .../044-libarmadillo12_1%3a12.6.7+dfsg-1_arm64.deb ... 804s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 804s Selecting previously unselected package libblas-dev:arm64. 804s Preparing to unpack .../045-libblas-dev_3.12.0-3_arm64.deb ... 804s Unpacking libblas-dev:arm64 (3.12.0-3) ... 805s Selecting previously unselected package libsnappy1v5:arm64. 805s Preparing to unpack .../046-libsnappy1v5_1.1.10-1_arm64.deb ... 805s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 805s Selecting previously unselected package libblosc1:arm64. 805s Preparing to unpack .../047-libblosc1_1.21.5+ds-1_arm64.deb ... 805s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 805s Selecting previously unselected package libbz2-dev:arm64. 805s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 805s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 806s Selecting previously unselected package libcfitsio10:arm64. 806s Preparing to unpack .../049-libcfitsio10_4.3.1-1_arm64.deb ... 806s Unpacking libcfitsio10:arm64 (4.3.1-1) ... 806s Selecting previously unselected package libdav1d7:arm64. 806s Preparing to unpack .../050-libdav1d7_1.4.0-1_arm64.deb ... 807s Unpacking libdav1d7:arm64 (1.4.0-1) ... 807s Selecting previously unselected package libde265-0:arm64. 807s Preparing to unpack .../051-libde265-0_1.0.15-1_arm64.deb ... 807s Unpacking libde265-0:arm64 (1.0.15-1) ... 807s Selecting previously unselected package libfyba0:arm64. 808s Preparing to unpack .../052-libfyba0_4.1.1-8_arm64.deb ... 808s Unpacking libfyba0:arm64 (4.1.1-8) ... 808s Selecting previously unselected package libminizip1:arm64. 808s Preparing to unpack .../053-libminizip1_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 808s Unpacking libminizip1:arm64 (1:1.3.dfsg-3ubuntu1) ... 808s Selecting previously unselected package libfreexl1:arm64. 809s Preparing to unpack .../054-libfreexl1_2.0.0-1_arm64.deb ... 809s Unpacking libfreexl1:arm64 (2.0.0-1) ... 809s Selecting previously unselected package libgeos3.12.1:arm64. 809s Preparing to unpack .../055-libgeos3.12.1_3.12.1-1_arm64.deb ... 809s Unpacking libgeos3.12.1:arm64 (3.12.1-1) ... 810s Selecting previously unselected package libgeos-c1v5:arm64. 810s Preparing to unpack .../056-libgeos-c1v5_3.12.1-1_arm64.deb ... 810s Unpacking libgeos-c1v5:arm64 (3.12.1-1) ... 810s Selecting previously unselected package proj-data. 810s Preparing to unpack .../057-proj-data_9.3.1-1_all.deb ... 810s Unpacking proj-data (9.3.1-1) ... 813s Selecting previously unselected package libproj25:arm64. 813s Preparing to unpack .../058-libproj25_9.3.1-1_arm64.deb ... 813s Unpacking libproj25:arm64 (9.3.1-1) ... 814s Selecting previously unselected package libgeotiff5:arm64. 814s Preparing to unpack .../059-libgeotiff5_1.7.1-5_arm64.deb ... 814s Unpacking libgeotiff5:arm64 (1.7.1-5) ... 814s Selecting previously unselected package libgif7:arm64. 814s Preparing to unpack .../060-libgif7_5.2.1-2.5_arm64.deb ... 814s Unpacking libgif7:arm64 (5.2.1-2.5) ... 815s Selecting previously unselected package libhdf4-0-alt. 815s Preparing to unpack .../061-libhdf4-0-alt_4.2.16-3_arm64.deb ... 815s Unpacking libhdf4-0-alt (4.2.16-3) ... 815s Selecting previously unselected package libsz2:arm64. 815s Preparing to unpack .../062-libsz2_1.1.2-1_arm64.deb ... 815s Unpacking libsz2:arm64 (1.1.2-1) ... 816s Selecting previously unselected package libhdf5-103-1:arm64. 816s Preparing to unpack .../063-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 816s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 817s Selecting previously unselected package libheif-plugin-dav1d:arm64. 817s Preparing to unpack .../064-libheif-plugin-dav1d_1.17.6-1ubuntu1_arm64.deb ... 817s Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 817s Selecting previously unselected package libheif-plugin-libde265:arm64. 817s Preparing to unpack .../065-libheif-plugin-libde265_1.17.6-1ubuntu1_arm64.deb ... 817s Unpacking libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 817s Selecting previously unselected package libheif1:arm64. 818s Preparing to unpack .../066-libheif1_1.17.6-1ubuntu1_arm64.deb ... 818s Unpacking libheif1:arm64 (1.17.6-1ubuntu1) ... 818s Selecting previously unselected package liburiparser1:arm64. 818s Preparing to unpack .../067-liburiparser1_0.9.7+dfsg-2_arm64.deb ... 818s Unpacking liburiparser1:arm64 (0.9.7+dfsg-2) ... 818s Selecting previously unselected package libkmlbase1:arm64. 818s Preparing to unpack .../068-libkmlbase1_1.3.0-10_arm64.deb ... 818s Unpacking libkmlbase1:arm64 (1.3.0-10) ... 819s Selecting previously unselected package libkmldom1:arm64. 819s Preparing to unpack .../069-libkmldom1_1.3.0-10_arm64.deb ... 819s Unpacking libkmldom1:arm64 (1.3.0-10) ... 819s Selecting previously unselected package libkmlengine1:arm64. 820s Preparing to unpack .../070-libkmlengine1_1.3.0-10_arm64.deb ... 820s Unpacking libkmlengine1:arm64 (1.3.0-10) ... 820s Selecting previously unselected package mysql-common. 820s Preparing to unpack .../071-mysql-common_5.8+1.1.0_all.deb ... 820s Unpacking mysql-common (5.8+1.1.0) ... 821s Selecting previously unselected package libmysqlclient21:arm64. 821s Preparing to unpack .../072-libmysqlclient21_8.0.36-1_arm64.deb ... 821s Unpacking libmysqlclient21:arm64 (8.0.36-1) ... 822s Selecting previously unselected package libhdf5-hl-100:arm64. 822s Preparing to unpack .../073-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 822s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 822s Selecting previously unselected package libnetcdf19:arm64. 822s Preparing to unpack .../074-libnetcdf19_1%3a4.9.2-3ubuntu1_arm64.deb ... 822s Unpacking libnetcdf19:arm64 (1:4.9.2-3ubuntu1) ... 823s Selecting previously unselected package libltdl7:arm64. 823s Preparing to unpack .../075-libltdl7_2.4.7-7_arm64.deb ... 823s Unpacking libltdl7:arm64 (2.4.7-7) ... 823s Selecting previously unselected package libodbc2:arm64. 824s Preparing to unpack .../076-libodbc2_2.3.12-1_arm64.deb ... 824s Unpacking libodbc2:arm64 (2.3.12-1) ... 824s Selecting previously unselected package unixodbc-common. 824s Preparing to unpack .../077-unixodbc-common_2.3.12-1_all.deb ... 824s Unpacking unixodbc-common (2.3.12-1) ... 825s Selecting previously unselected package libodbcinst2:arm64. 825s Preparing to unpack .../078-libodbcinst2_2.3.12-1_arm64.deb ... 825s Unpacking libodbcinst2:arm64 (2.3.12-1) ... 825s Selecting previously unselected package libogdi4.1. 825s Preparing to unpack .../079-libogdi4.1_4.1.1+ds-1_arm64.deb ... 825s Unpacking libogdi4.1 (4.1.1+ds-1) ... 826s Selecting previously unselected package libopenjp2-7:arm64. 826s Preparing to unpack .../080-libopenjp2-7_2.5.0-2_arm64.deb ... 826s Unpacking libopenjp2-7:arm64 (2.5.0-2) ... 827s Selecting previously unselected package liblcms2-2:arm64. 827s Preparing to unpack .../081-liblcms2-2_2.14-2_arm64.deb ... 827s Unpacking liblcms2-2:arm64 (2.14-2) ... 827s Selecting previously unselected package libpoppler134:arm64. 828s Preparing to unpack .../082-libpoppler134_24.02.0-1ubuntu2_arm64.deb ... 828s Unpacking libpoppler134:arm64 (24.02.0-1ubuntu2) ... 829s Selecting previously unselected package libpq5:arm64. 829s Preparing to unpack .../083-libpq5_16.2-1_arm64.deb ... 829s Unpacking libpq5:arm64 (16.2-1) ... 829s Selecting previously unselected package libqhull-r8.0:arm64. 829s Preparing to unpack .../084-libqhull-r8.0_2020.2-6_arm64.deb ... 829s Unpacking libqhull-r8.0:arm64 (2020.2-6) ... 830s Selecting previously unselected package librttopo1:arm64. 830s Preparing to unpack .../085-librttopo1_1.1.0-3_arm64.deb ... 830s Unpacking librttopo1:arm64 (1.1.0-3) ... 830s Selecting previously unselected package libspatialite8:arm64. 831s Preparing to unpack .../086-libspatialite8_5.1.0-1_arm64.deb ... 831s Unpacking libspatialite8:arm64 (5.1.0-1) ... 832s Selecting previously unselected package libxerces-c3.2:arm64. 832s Preparing to unpack .../087-libxerces-c3.2_3.2.4+debian-1.1_arm64.deb ... 832s Unpacking libxerces-c3.2:arm64 (3.2.4+debian-1.1) ... 833s Selecting previously unselected package libgdal34:arm64. 833s Preparing to unpack .../088-libgdal34_3.8.4+dfsg-1_arm64.deb ... 833s Unpacking libgdal34:arm64 (3.8.4+dfsg-1) ... 835s Selecting previously unselected package libicu-dev:arm64. 835s Preparing to unpack .../089-libicu-dev_74.2-1ubuntu1_arm64.deb ... 836s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 841s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 841s Preparing to unpack .../090-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 841s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 841s Selecting previously unselected package libjpeg8-dev:arm64. 842s Preparing to unpack .../091-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 842s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 842s Selecting previously unselected package libjpeg-dev:arm64. 842s Preparing to unpack .../092-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 842s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 842s Selecting previously unselected package liblapack-dev:arm64. 843s Preparing to unpack .../093-liblapack-dev_3.12.0-3_arm64.deb ... 843s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 845s Selecting previously unselected package libncurses-dev:arm64. 845s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 845s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 845s Selecting previously unselected package libpcre2-16-0:arm64. 846s Preparing to unpack .../095-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 846s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 846s Selecting previously unselected package libpcre2-32-0:arm64. 846s Preparing to unpack .../096-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 846s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 846s Selecting previously unselected package libpcre2-posix3:arm64. 846s Preparing to unpack .../097-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 846s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 847s Selecting previously unselected package libpcre2-dev:arm64. 847s Preparing to unpack .../098-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 847s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 848s Selecting previously unselected package libpkgconf3:arm64. 848s Preparing to unpack .../099-libpkgconf3_1.8.1-2_arm64.deb ... 848s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 848s Selecting previously unselected package zlib1g-dev:arm64. 848s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 848s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 849s Selecting previously unselected package libpng-dev:arm64. 849s Preparing to unpack .../101-libpng-dev_1.6.43-1_arm64.deb ... 849s Unpacking libpng-dev:arm64 (1.6.43-1) ... 849s Selecting previously unselected package libreadline-dev:arm64. 849s Preparing to unpack .../102-libreadline-dev_8.2-3_arm64.deb ... 849s Unpacking libreadline-dev:arm64 (8.2-3) ... 850s Selecting previously unselected package libudunits2-data. 850s Preparing to unpack .../103-libudunits2-data_2.2.28-7_all.deb ... 850s Unpacking libudunits2-data (2.2.28-7) ... 850s Selecting previously unselected package libudunits2-0. 850s Preparing to unpack .../104-libudunits2-0_2.2.28-7_arm64.deb ... 850s Unpacking libudunits2-0 (2.2.28-7) ... 850s Selecting previously unselected package pkgconf-bin. 850s Preparing to unpack .../105-pkgconf-bin_1.8.1-2_arm64.deb ... 850s Unpacking pkgconf-bin (1.8.1-2) ... 851s Selecting previously unselected package pkgconf:arm64. 851s Preparing to unpack .../106-pkgconf_1.8.1-2_arm64.deb ... 851s Unpacking pkgconf:arm64 (1.8.1-2) ... 851s Selecting previously unselected package pkg-config:arm64. 851s Preparing to unpack .../107-pkg-config_1.8.1-2_arm64.deb ... 851s Unpacking pkg-config:arm64 (1.8.1-2) ... 851s Selecting previously unselected package liblzma-dev:arm64. 851s Preparing to unpack .../108-liblzma-dev_5.4.5-0.3_arm64.deb ... 851s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 852s Selecting previously unselected package r-base-dev. 852s Preparing to unpack .../109-r-base-dev_4.3.2-1build1_all.deb ... 852s Unpacking r-base-dev (4.3.2-1build1) ... 852s Selecting previously unselected package pkg-r-autopkgtest. 852s Preparing to unpack .../110-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 852s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 852s Selecting previously unselected package r-cran-class. 852s Preparing to unpack .../111-r-cran-class_7.3-22-2_arm64.deb ... 852s Unpacking r-cran-class (7.3-22-2) ... 853s Selecting previously unselected package r-cran-proxy. 853s Preparing to unpack .../112-r-cran-proxy_0.4-27-1_arm64.deb ... 853s Unpacking r-cran-proxy (0.4-27-1) ... 853s Selecting previously unselected package r-cran-e1071. 854s Preparing to unpack .../113-r-cran-e1071_1.7-14-1_arm64.deb ... 854s Unpacking r-cran-e1071 (1.7-14-1) ... 854s Selecting previously unselected package r-cran-kernsmooth. 854s Preparing to unpack .../114-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 854s Unpacking r-cran-kernsmooth (2.23-22-1) ... 854s Selecting previously unselected package r-cran-classint. 855s Preparing to unpack .../115-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 855s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 855s Selecting previously unselected package r-cran-dbi. 855s Preparing to unpack .../116-r-cran-dbi_1.2.2-1_all.deb ... 855s Unpacking r-cran-dbi (1.2.2-1) ... 855s Selecting previously unselected package r-cran-deldir. 856s Preparing to unpack .../117-r-cran-deldir_2.0-4-1_arm64.deb ... 856s Unpacking r-cran-deldir (2.0-4-1) ... 856s Selecting previously unselected package r-cran-rcppeigen. 856s Preparing to unpack .../118-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 856s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 859s Selecting previously unselected package r-cran-interp. 859s Preparing to unpack .../119-r-cran-interp_1.1-6-1_arm64.deb ... 859s Unpacking r-cran-interp (1.1-6-1) ... 860s Selecting previously unselected package r-cran-maps. 860s Preparing to unpack .../120-r-cran-maps_3.4.2-1_arm64.deb ... 860s Unpacking r-cran-maps (3.4.2-1) ... 861s Selecting previously unselected package r-cran-wk. 862s Preparing to unpack .../121-r-cran-wk_0.9.1-1_arm64.deb ... 862s Unpacking r-cran-wk (0.9.1-1) ... 862s Selecting previously unselected package r-cran-s2. 862s Preparing to unpack .../122-r-cran-s2_1.1.6-1_arm64.deb ... 862s Unpacking r-cran-s2 (1.1.6-1) ... 864s Selecting previously unselected package r-cran-units. 864s Preparing to unpack .../123-r-cran-units_0.8-5+dfsg-1_arm64.deb ... 864s Unpacking r-cran-units (0.8-5+dfsg-1) ... 864s Selecting previously unselected package r-cran-sf. 864s Preparing to unpack .../124-r-cran-sf_1.0-15+dfsg-1_arm64.deb ... 864s Unpacking r-cran-sf (1.0-15+dfsg-1) ... 865s Selecting previously unselected package r-cran-spdata. 866s Preparing to unpack .../125-r-cran-spdata_2.3.0-1_all.deb ... 866s Unpacking r-cran-spdata (2.3.0-1) ... 866s Selecting previously unselected package r-cran-spdep. 866s Preparing to unpack .../126-r-cran-spdep_1.3-1+dfsg-1_arm64.deb ... 866s Unpacking r-cran-spdep (1.3-1+dfsg-1) ... 867s Selecting previously unselected package autopkgtest-satdep. 867s Preparing to unpack .../127-2-autopkgtest-satdep.deb ... 867s Unpacking autopkgtest-satdep (0) ... 868s Setting up liblcms2-2:arm64 (2.14-2) ... 868s Setting up mysql-common (5.8+1.1.0) ... 869s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode 869s Setting up libmysqlclient21:arm64 (8.0.36-1) ... 869s Setting up r-cran-maps (3.4.2-1) ... 869s Setting up libxerces-c3.2:arm64 (3.2.4+debian-1.1) ... 869s Setting up proj-data (9.3.1-1) ... 869s Setting up r-cran-class (7.3-22-2) ... 869s Setting up libproj25:arm64 (9.3.1-1) ... 869s Setting up libogdi4.1 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using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 872s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 872s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 872s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 872s Setting up g++ (4:13.2.0-7ubuntu1) ... 872s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 872s Setting up build-essential (12.10ubuntu1) ... 872s Setting up r-base-dev (4.3.2-1build1) ... 872s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 872s Setting up libheif-plugin-dav1d:arm64 (1.17.6-1ubuntu1) ... 872s Setting up libheif1:arm64 (1.17.6-1ubuntu1) ... 872s Setting up libgdal34:arm64 (3.8.4+dfsg-1) ... 872s Setting up libheif-plugin-libde265:arm64 (1.17.6-1ubuntu1) ... 872s Setting up r-cran-sf (1.0-15+dfsg-1) ... 872s Setting up r-cran-spdep (1.3-1+dfsg-1) ... 872s Setting up autopkgtest-satdep (0) ... 872s Processing triggers for libc-bin (2.39-0ubuntu2) ... 873s Processing triggers for man-db (2.12.0-3) ... 880s Processing triggers for install-info (7.1-3) ... 908s (Reading database ... 95041 files and directories currently installed.) 908s Removing autopkgtest-satdep (0) ... 912s autopkgtest [18:03:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 912s autopkgtest [18:03:59]: test pkg-r-autopkgtest: [----------------------- 912s Test: Try to load the R library adegenet 913s 913s R version 4.3.2 (2023-10-31) -- "Eye Holes" 913s Copyright (C) 2023 The R Foundation for Statistical Computing 913s Platform: aarch64-unknown-linux-gnu (64-bit) 913s 913s R is free software and comes with ABSOLUTELY NO WARRANTY. 913s You are welcome to redistribute it under certain conditions. 913s Type 'license()' or 'licence()' for distribution details. 913s 913s R is a collaborative project with many contributors. 913s Type 'contributors()' for more information and 913s 'citation()' on how to cite R or R packages in publications. 913s 913s Type 'demo()' for some demos, 'help()' for on-line help, or 913s 'help.start()' for an HTML browser interface to help. 913s Type 'q()' to quit R. 913s 915s > library('adegenet') 915s Loading required package: ade4 942s 942s /// adegenet 2.1.10 is loaded //////////// 942s 942s > overview: '?adegenet' 942s > tutorials/doc/questions: 'adegenetWeb()' 942s > bug reports/feature requests: adegenetIssues() 942s 942s 942s > 942s > 943s Other tests are currently unsupported! 943s They will be progressively added. 943s autopkgtest [18:04:30]: test pkg-r-autopkgtest: -----------------------] 944s autopkgtest [18:04:31]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 944s pkg-r-autopkgtest PASS 945s autopkgtest [18:04:32]: @@@@@@@@@@@@@@@@@@@@ summary 945s run-unit-test PASS 945s pkg-r-autopkgtest PASS 970s Creating nova instance adt-noble-arm64-r-cran-adegenet-20240316-174847-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...